Query 047393
Match_columns 373
No_of_seqs 374 out of 3087
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.3E-72 2.9E-77 563.7 39.8 363 3-366 282-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.1E-66 4.5E-71 530.5 39.4 359 3-364 447-857 (857)
3 PLN03081 pentatricopeptide (PP 100.0 4.4E-50 9.5E-55 401.5 22.9 350 3-368 181-546 (697)
4 PLN03218 maturation of RBCL 1; 100.0 5.1E-50 1.1E-54 406.0 23.4 286 3-299 429-724 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 3.7E-50 8E-55 410.9 21.6 298 3-303 245-598 (857)
6 PLN03218 maturation of RBCL 1; 100.0 6.6E-48 1.4E-52 390.7 27.2 319 8-355 469-795 (1060)
7 PRK11788 tetratricopeptide rep 99.8 5.7E-18 1.2E-22 159.0 26.3 235 10-249 68-315 (389)
8 PRK11788 tetratricopeptide rep 99.8 3E-17 6.5E-22 154.1 26.1 234 12-249 108-353 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 6E-16 1.3E-20 159.7 30.3 235 9-249 565-803 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 7.5E-16 1.6E-20 159.0 27.1 338 9-368 531-890 (899)
11 KOG4422 Uncharacterized conser 99.6 1.3E-12 2.9E-17 116.2 24.3 233 9-245 205-462 (625)
12 PRK15174 Vi polysaccharide exp 99.6 1.8E-12 3.8E-17 128.9 28.0 230 13-249 112-351 (656)
13 PRK15174 Vi polysaccharide exp 99.6 1.9E-12 4.2E-17 128.6 28.1 234 9-249 142-385 (656)
14 TIGR00990 3a0801s09 mitochondr 99.5 5.6E-12 1.2E-16 125.2 28.2 231 10-247 330-573 (615)
15 PF13041 PPR_2: PPR repeat fam 99.5 2.1E-14 4.6E-19 92.4 6.8 50 9-58 1-50 (50)
16 PRK09782 bacteriophage N4 rece 99.5 1.1E-11 2.3E-16 126.8 27.1 230 10-249 476-710 (987)
17 PF13041 PPR_2: PPR repeat fam 99.5 1.2E-13 2.7E-18 88.8 6.6 50 110-159 1-50 (50)
18 TIGR00990 3a0801s09 mitochondr 99.5 3.5E-11 7.6E-16 119.5 26.3 222 24-249 307-541 (615)
19 KOG4626 O-linked N-acetylgluco 99.4 2.5E-11 5.5E-16 112.7 20.7 227 14-249 255-489 (966)
20 PF14432 DYW_deaminase: DYW fa 99.4 4.4E-13 9.5E-18 101.7 7.5 55 296-356 61-116 (116)
21 KOG4626 O-linked N-acetylgluco 99.4 9.7E-12 2.1E-16 115.4 17.4 231 12-249 219-455 (966)
22 PF13429 TPR_15: Tetratricopep 99.4 1.3E-12 2.9E-17 116.9 9.8 229 16-249 13-247 (280)
23 PF13429 TPR_15: Tetratricopep 99.4 1.4E-12 3.1E-17 116.6 9.8 227 10-244 43-276 (280)
24 TIGR02521 type_IV_pilW type IV 99.4 4.3E-10 9.3E-15 96.9 23.4 198 46-246 31-233 (234)
25 PRK09782 bacteriophage N4 rece 99.4 6.1E-10 1.3E-14 114.1 27.6 235 9-249 507-744 (987)
26 PRK10747 putative protoheme IX 99.4 1.7E-09 3.6E-14 101.6 28.4 215 21-244 128-389 (398)
27 KOG4422 Uncharacterized conser 99.3 3E-10 6.4E-15 101.5 21.2 228 11-244 116-384 (625)
28 TIGR02521 type_IV_pilW type IV 99.3 8.2E-10 1.8E-14 95.2 23.8 195 10-209 30-229 (234)
29 PRK11447 cellulose synthase su 99.3 1.5E-09 3.2E-14 115.2 29.6 224 14-247 464-702 (1157)
30 TIGR00540 hemY_coli hemY prote 99.3 2.9E-09 6.2E-14 100.5 27.2 223 18-244 160-398 (409)
31 PRK11447 cellulose synthase su 99.3 1.2E-09 2.7E-14 115.8 27.2 231 10-249 384-670 (1157)
32 PRK10747 putative protoheme IX 99.3 3.5E-09 7.6E-14 99.4 25.6 229 13-249 84-361 (398)
33 PRK10049 pgaA outer membrane p 99.2 4.1E-09 8.9E-14 107.1 25.5 219 28-249 213-460 (765)
34 PRK12370 invasion protein regu 99.2 1E-08 2.3E-13 100.4 27.4 227 9-244 254-501 (553)
35 KOG1126 DNA-binding cell divis 99.2 5.8E-10 1.3E-14 104.8 17.0 223 15-249 357-590 (638)
36 KOG1840 Kinesin light chain [C 99.2 4.1E-09 8.9E-14 99.5 21.8 232 13-244 201-478 (508)
37 COG2956 Predicted N-acetylgluc 99.2 2.7E-08 5.9E-13 86.2 24.8 225 14-247 39-280 (389)
38 PRK10049 pgaA outer membrane p 99.2 2.8E-08 6E-13 101.1 29.3 126 123-249 248-392 (765)
39 KOG4318 Bicoid mRNA stability 99.2 6.6E-10 1.4E-14 107.2 15.6 244 32-300 11-277 (1088)
40 KOG1126 DNA-binding cell divis 99.2 8E-10 1.7E-14 103.8 15.7 215 26-249 334-556 (638)
41 COG3071 HemY Uncharacterized e 99.1 7.5E-08 1.6E-12 85.8 25.5 227 11-244 118-389 (400)
42 PRK11189 lipoprotein NlpI; Pro 99.1 4.8E-08 1.1E-12 87.9 24.0 217 25-249 40-269 (296)
43 TIGR00540 hemY_coli hemY prote 99.1 5.1E-08 1.1E-12 92.0 25.1 225 19-249 126-370 (409)
44 PF04733 Coatomer_E: Coatomer 99.1 8.8E-09 1.9E-13 91.8 17.7 228 11-249 35-269 (290)
45 PRK12370 invasion protein regu 99.1 2.7E-08 5.9E-13 97.5 22.6 209 25-245 318-535 (553)
46 KOG1155 Anaphase-promoting com 99.1 1.2E-07 2.5E-12 86.0 23.4 221 20-246 236-462 (559)
47 KOG2003 TPR repeat-containing 99.0 4.1E-08 8.8E-13 88.6 19.8 186 60-249 504-693 (840)
48 COG2956 Predicted N-acetylgluc 99.0 1.2E-07 2.7E-12 82.2 21.2 230 14-249 72-315 (389)
49 KOG1129 TPR repeat-containing 99.0 2.7E-08 5.9E-13 86.3 16.7 230 15-249 227-462 (478)
50 PRK14574 hmsH outer membrane p 99.0 4.3E-07 9.4E-12 91.7 27.9 91 156-247 301-398 (822)
51 PF12854 PPR_1: PPR repeat 99.0 7.5E-10 1.6E-14 64.3 4.0 34 75-108 1-34 (34)
52 PRK14574 hmsH outer membrane p 98.9 5.7E-07 1.2E-11 90.8 25.5 221 27-249 267-517 (822)
53 KOG4318 Bicoid mRNA stability 98.9 1.1E-08 2.3E-13 99.1 12.1 183 8-198 22-286 (1088)
54 KOG1155 Anaphase-promoting com 98.9 4.1E-07 8.8E-12 82.6 20.1 216 21-244 272-494 (559)
55 PF12854 PPR_1: PPR repeat 98.8 5.3E-09 1.2E-13 60.7 4.4 31 178-208 2-32 (34)
56 PRK11189 lipoprotein NlpI; Pro 98.8 1.3E-06 2.9E-11 78.6 22.2 203 11-221 64-275 (296)
57 PF12569 NARP1: NMDA receptor- 98.8 8.9E-07 1.9E-11 84.7 21.4 227 19-251 12-264 (517)
58 COG3071 HemY Uncharacterized e 98.8 4.1E-06 8.8E-11 74.9 22.9 231 16-249 87-361 (400)
59 KOG0547 Translocase of outer m 98.8 1.2E-06 2.6E-11 80.1 18.8 216 21-244 336-565 (606)
60 COG3063 PilF Tfp pilus assembl 98.8 7.5E-06 1.6E-10 68.1 21.7 198 48-249 37-240 (250)
61 KOG1840 Kinesin light chain [C 98.7 2.5E-06 5.3E-11 81.0 21.4 198 47-244 200-437 (508)
62 KOG1173 Anaphase-promoting com 98.7 1.1E-05 2.3E-10 75.3 23.2 238 10-249 243-522 (611)
63 KOG1129 TPR repeat-containing 98.7 6.2E-07 1.3E-11 78.0 13.3 199 46-249 223-428 (478)
64 COG3063 PilF Tfp pilus assembl 98.7 1.2E-05 2.7E-10 66.9 20.3 203 12-220 36-244 (250)
65 KOG0495 HAT repeat protein [RN 98.6 2.1E-05 4.5E-10 74.6 23.4 231 10-249 617-850 (913)
66 KOG1174 Anaphase-promoting com 98.6 2.7E-05 5.8E-10 70.1 22.7 233 8-249 229-504 (564)
67 KOG2002 TPR-containing nuclear 98.6 4.4E-06 9.6E-11 82.3 19.4 235 9-249 450-749 (1018)
68 PF12569 NARP1: NMDA receptor- 98.6 5.7E-05 1.2E-09 72.5 26.6 221 13-244 40-333 (517)
69 KOG3081 Vesicle coat complex C 98.6 3.8E-05 8.2E-10 65.3 21.9 175 68-249 95-275 (299)
70 TIGR03302 OM_YfiO outer membra 98.6 4.4E-06 9.5E-11 72.6 17.3 60 188-247 171-234 (235)
71 PLN02789 farnesyltranstransfer 98.6 4.9E-05 1.1E-09 68.8 24.3 229 13-247 39-304 (320)
72 KOG2076 RNA polymerase III tra 98.6 2.3E-05 4.9E-10 76.9 23.2 68 182-249 413-482 (895)
73 TIGR00756 PPR pentatricopeptid 98.6 9.2E-08 2E-12 56.0 4.2 35 12-46 1-35 (35)
74 KOG0495 HAT repeat protein [RN 98.5 9.6E-05 2.1E-09 70.3 25.1 189 56-249 594-786 (913)
75 KOG1070 rRNA processing protei 98.5 3.8E-05 8.2E-10 78.5 22.7 224 12-242 1459-1697(1710)
76 TIGR03302 OM_YfiO outer membra 98.5 2.4E-05 5.1E-10 68.0 18.7 180 8-208 30-228 (235)
77 PF13812 PPR_3: Pentatricopept 98.5 3.1E-07 6.6E-12 53.4 4.5 34 11-44 1-34 (34)
78 PRK10370 formate-dependent nit 98.4 2.7E-05 5.8E-10 65.6 17.5 148 88-247 23-175 (198)
79 TIGR00756 PPR pentatricopeptid 98.4 3.5E-07 7.7E-12 53.4 4.4 34 113-146 1-34 (35)
80 PRK15359 type III secretion sy 98.4 1E-05 2.2E-10 64.5 13.4 98 150-249 27-125 (144)
81 KOG2076 RNA polymerase III tra 98.4 0.0002 4.4E-09 70.4 24.3 228 19-249 147-447 (895)
82 PF04733 Coatomer_E: Coatomer 98.4 6.6E-06 1.4E-10 73.4 13.2 198 8-215 63-268 (290)
83 KOG2003 TPR repeat-containing 98.4 4.2E-05 9E-10 69.6 18.1 203 23-231 502-709 (840)
84 cd05804 StaR_like StaR_like; a 98.4 0.00021 4.5E-09 66.2 23.9 90 119-209 121-212 (355)
85 KOG1173 Anaphase-promoting com 98.4 8.1E-05 1.8E-09 69.6 19.7 210 10-226 311-532 (611)
86 KOG1915 Cell cycle control pro 98.4 0.00038 8.1E-09 64.0 23.4 237 8-249 171-470 (677)
87 KOG2002 TPR-containing nuclear 98.4 0.00019 4E-09 71.3 22.8 237 9-249 268-529 (1018)
88 cd05804 StaR_like StaR_like; a 98.3 0.00047 1E-08 63.8 25.0 94 152-247 119-217 (355)
89 PF13812 PPR_3: Pentatricopept 98.3 9.8E-07 2.1E-11 51.2 4.4 33 113-145 2-34 (34)
90 KOG0547 Translocase of outer m 98.3 3E-05 6.4E-10 71.3 15.5 186 59-249 339-536 (606)
91 PRK15359 type III secretion sy 98.3 1.7E-05 3.7E-10 63.3 12.4 102 112-216 24-125 (144)
92 KOG1070 rRNA processing protei 98.3 0.00014 3.1E-09 74.5 20.6 200 43-246 1454-1664(1710)
93 KOG1125 TPR repeat-containing 98.3 1.9E-05 4.1E-10 73.9 13.4 191 56-249 295-497 (579)
94 TIGR02552 LcrH_SycD type III s 98.3 3E-05 6.5E-10 61.0 12.9 101 147-249 17-118 (135)
95 PF01535 PPR: PPR repeat; Int 98.2 1.2E-06 2.6E-11 49.6 3.4 31 12-42 1-31 (31)
96 KOG1128 Uncharacterized conser 98.2 4.7E-05 1E-09 73.2 15.3 211 16-244 403-615 (777)
97 PRK14720 transcript cleavage f 98.2 0.00021 4.6E-09 72.2 20.3 217 9-249 29-256 (906)
98 KOG1125 TPR repeat-containing 98.2 5.1E-05 1.1E-09 71.1 14.2 219 21-247 295-529 (579)
99 PRK10370 formate-dependent nit 98.2 0.00048 1E-08 58.0 18.9 153 18-186 23-181 (198)
100 COG4783 Putative Zn-dependent 98.1 0.0012 2.6E-08 61.1 22.0 161 79-244 272-436 (484)
101 PF01535 PPR: PPR repeat; Int 98.1 3.1E-06 6.7E-11 47.9 3.3 31 113-143 1-31 (31)
102 PRK15179 Vi polysaccharide bio 98.1 0.001 2.2E-08 66.5 22.7 128 46-175 86-216 (694)
103 KOG3060 Uncharacterized conser 98.1 0.00098 2.1E-08 56.6 19.0 186 61-249 27-224 (289)
104 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00017 3.6E-09 66.8 15.7 121 117-243 174-295 (395)
105 PF08579 RPM2: Mitochondrial r 98.1 5E-05 1.1E-09 56.1 9.7 80 14-93 28-116 (120)
106 COG5010 TadD Flp pilus assembl 98.1 0.00099 2.2E-08 56.8 18.9 153 52-208 72-227 (257)
107 PLN02789 farnesyltranstransfer 98.1 0.0011 2.3E-08 60.2 20.4 190 56-249 47-254 (320)
108 KOG1915 Cell cycle control pro 98.1 0.0024 5.3E-08 58.9 21.8 232 10-244 321-584 (677)
109 PRK15179 Vi polysaccharide bio 98.0 0.00082 1.8E-08 67.1 20.5 130 78-211 83-216 (694)
110 PF05843 Suf: Suppressor of fo 98.0 0.0003 6.5E-09 62.8 15.3 134 113-249 2-140 (280)
111 KOG3060 Uncharacterized conser 98.0 0.0048 1E-07 52.5 21.1 191 24-219 25-228 (289)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.8E-09 66.0 14.6 125 85-214 173-298 (395)
113 COG5010 TadD Flp pilus assembl 98.0 0.00059 1.3E-08 58.1 15.6 156 15-173 70-228 (257)
114 TIGR02552 LcrH_SycD type III s 98.0 0.00026 5.6E-09 55.6 12.7 100 115-217 20-119 (135)
115 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00022 4.7E-09 54.4 11.9 99 151-249 6-109 (119)
116 cd00189 TPR Tetratricopeptide 97.9 0.00016 3.4E-09 51.8 10.6 94 152-247 5-99 (100)
117 COG4783 Putative Zn-dependent 97.9 0.0023 5.1E-08 59.2 19.8 114 91-208 316-433 (484)
118 KOG1156 N-terminal acetyltrans 97.9 0.0023 5.1E-08 61.1 19.8 238 7-249 4-252 (700)
119 PRK04841 transcriptional regul 97.9 0.0028 6E-08 66.4 22.7 233 12-246 492-761 (903)
120 PF09976 TPR_21: Tetratricopep 97.9 0.0013 2.9E-08 52.3 15.9 125 114-242 14-144 (145)
121 PF09976 TPR_21: Tetratricopep 97.9 0.00077 1.7E-08 53.8 14.4 123 12-137 13-143 (145)
122 KOG2376 Signal recognition par 97.9 0.0023 5E-08 60.5 18.9 216 17-249 18-257 (652)
123 KOG0624 dsRNA-activated protei 97.9 0.0091 2E-07 53.1 21.2 222 20-249 115-374 (504)
124 KOG4162 Predicted calmodulin-b 97.9 0.014 3E-07 57.1 24.1 130 116-249 654-787 (799)
125 KOG3616 Selective LIM binding 97.8 0.00075 1.6E-08 65.2 15.3 131 21-171 742-874 (1636)
126 KOG2047 mRNA splicing factor [ 97.8 0.032 7E-07 53.6 25.3 163 83-247 389-581 (835)
127 PF06239 ECSIT: Evolutionarily 97.8 0.00014 3.1E-09 60.4 8.8 89 8-96 44-153 (228)
128 PF08579 RPM2: Mitochondrial r 97.8 0.00047 1E-08 51.0 10.5 82 113-195 26-116 (120)
129 cd00189 TPR Tetratricopeptide 97.8 0.00042 9.1E-09 49.6 10.6 97 115-214 3-99 (100)
130 PF06239 ECSIT: Evolutionarily 97.8 0.00026 5.7E-09 58.8 10.2 96 102-198 35-153 (228)
131 KOG1128 Uncharacterized conser 97.8 0.0012 2.6E-08 63.8 15.7 186 12-210 425-614 (777)
132 PRK14720 transcript cleavage f 97.8 0.0061 1.3E-07 62.0 21.5 199 20-251 74-312 (906)
133 PF10037 MRP-S27: Mitochondria 97.7 0.00046 1E-08 64.3 12.2 118 78-196 63-186 (429)
134 KOG3785 Uncharacterized conser 97.7 0.013 2.8E-07 52.3 20.2 95 152-249 398-494 (557)
135 KOG3081 Vesicle coat complex C 97.7 0.0036 7.8E-08 53.6 15.9 166 34-208 96-267 (299)
136 PRK04841 transcriptional regul 97.7 0.013 2.8E-07 61.4 24.0 226 19-244 460-719 (903)
137 KOG1174 Anaphase-promoting com 97.7 0.0054 1.2E-07 55.7 17.4 202 44-249 192-401 (564)
138 PF10037 MRP-S27: Mitochondria 97.7 0.00091 2E-08 62.4 13.0 120 41-160 61-186 (429)
139 KOG4340 Uncharacterized conser 97.6 0.0089 1.9E-07 52.1 17.4 160 14-179 13-209 (459)
140 PF14938 SNAP: Soluble NSF att 97.6 0.0052 1.1E-07 55.0 17.1 205 13-246 37-267 (282)
141 KOG3616 Selective LIM binding 97.6 0.0032 6.9E-08 61.1 16.0 104 124-239 744-847 (1636)
142 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0015 3.2E-08 49.7 11.7 102 114-215 4-108 (119)
143 PLN03088 SGT1, suppressor of 97.6 0.00075 1.6E-08 62.4 11.5 101 119-223 9-110 (356)
144 PF13432 TPR_16: Tetratricopep 97.6 0.00025 5.5E-09 47.8 6.3 61 189-249 3-64 (65)
145 KOG1156 N-terminal acetyltrans 97.6 0.034 7.4E-07 53.5 21.9 224 21-248 51-286 (700)
146 KOG0985 Vesicle coat protein c 97.6 0.022 4.8E-07 57.4 21.3 88 111-207 1103-1190(1666)
147 KOG2047 mRNA splicing factor [ 97.6 0.0051 1.1E-07 58.9 16.4 174 52-228 108-293 (835)
148 PF13414 TPR_11: TPR repeat; P 97.6 0.00017 3.7E-09 49.3 5.1 66 182-247 2-69 (69)
149 PRK10153 DNA-binding transcrip 97.6 0.0056 1.2E-07 59.3 17.0 138 110-249 335-486 (517)
150 PF12895 Apc3: Anaphase-promot 97.5 0.00039 8.4E-09 49.7 7.0 81 160-241 2-83 (84)
151 PRK02603 photosystem I assembl 97.5 0.0026 5.6E-08 52.3 12.6 128 13-162 37-166 (172)
152 PRK02603 photosystem I assembl 97.5 0.0046 9.9E-08 50.8 14.0 86 112-200 35-123 (172)
153 KOG2053 Mitochondrial inherita 97.5 0.037 8E-07 55.1 21.6 224 21-249 19-259 (932)
154 PLN03088 SGT1, suppressor of 97.5 0.0027 5.9E-08 58.7 13.3 95 88-186 9-106 (356)
155 PRK10866 outer membrane biogen 97.4 0.07 1.5E-06 46.5 21.9 168 54-242 40-238 (243)
156 KOG0553 TPR repeat-containing 97.4 0.0022 4.8E-08 55.9 11.1 94 122-219 91-185 (304)
157 PF05843 Suf: Suppressor of fo 97.4 0.0036 7.7E-08 55.9 12.6 93 13-107 3-96 (280)
158 CHL00033 ycf3 photosystem I as 97.4 0.0048 1E-07 50.5 12.4 89 49-137 38-138 (168)
159 PF14938 SNAP: Soluble NSF att 97.3 0.028 6.1E-07 50.3 17.8 118 115-247 97-227 (282)
160 PF12895 Apc3: Anaphase-promot 97.3 0.00043 9.3E-09 49.5 5.0 80 24-105 2-82 (84)
161 KOG1914 mRNA cleavage and poly 97.3 0.027 5.9E-07 53.1 17.4 121 84-208 369-497 (656)
162 KOG3617 WD40 and TPR repeat-co 97.3 0.019 4.1E-07 56.7 17.0 211 9-243 755-994 (1416)
163 CHL00033 ycf3 photosystem I as 97.3 0.0054 1.2E-07 50.2 11.9 62 113-174 36-99 (168)
164 KOG3785 Uncharacterized conser 97.3 0.0024 5.2E-08 56.8 9.8 194 19-221 293-499 (557)
165 KOG2796 Uncharacterized conser 97.3 0.016 3.6E-07 49.6 14.4 166 84-250 139-320 (366)
166 KOG0548 Molecular co-chaperone 97.3 0.034 7.3E-07 52.3 17.7 224 14-249 227-459 (539)
167 KOG0985 Vesicle coat protein c 97.2 0.089 1.9E-06 53.4 21.0 196 11-228 1104-1325(1666)
168 KOG2376 Signal recognition par 97.2 0.034 7.5E-07 52.9 17.5 176 52-243 18-202 (652)
169 KOG1914 mRNA cleavage and poly 97.2 0.043 9.3E-07 51.8 17.9 182 63-247 310-503 (656)
170 PRK15363 pathogenicity island 97.2 0.015 3.3E-07 46.2 13.1 91 152-245 40-132 (157)
171 KOG4340 Uncharacterized conser 97.2 0.026 5.7E-07 49.3 15.3 84 121-208 250-335 (459)
172 PF14559 TPR_19: Tetratricopep 97.2 0.0018 3.9E-08 44.0 6.8 61 159-221 3-63 (68)
173 PF12688 TPR_5: Tetratrico pep 97.2 0.019 4.2E-07 43.8 12.8 108 118-227 7-117 (120)
174 KOG2053 Mitochondrial inherita 97.2 0.12 2.7E-06 51.6 21.1 199 13-216 43-259 (932)
175 KOG0553 TPR repeat-containing 97.1 0.0078 1.7E-07 52.5 10.9 105 130-249 76-182 (304)
176 PRK10803 tol-pal system protei 97.1 0.012 2.6E-07 51.8 12.3 103 147-249 143-250 (263)
177 PF12921 ATP13: Mitochondrial 97.1 0.01 2.2E-07 45.8 10.4 54 142-195 47-100 (126)
178 PF13371 TPR_9: Tetratricopept 97.1 0.0019 4E-08 44.6 5.9 59 191-249 3-62 (73)
179 KOG1127 TPR repeat-containing 97.1 0.023 5E-07 57.2 15.0 176 62-244 474-658 (1238)
180 PF04840 Vps16_C: Vps16, C-ter 97.0 0.19 4.1E-06 45.6 19.9 100 119-237 184-283 (319)
181 PRK15363 pathogenicity island 97.0 0.043 9.3E-07 43.7 13.7 89 117-208 40-128 (157)
182 KOG1127 TPR repeat-containing 97.0 0.012 2.7E-07 59.0 12.7 152 96-251 473-632 (1238)
183 PF13525 YfiO: Outer membrane 97.0 0.17 3.8E-06 42.7 19.6 182 12-202 6-197 (203)
184 PRK10153 DNA-binding transcrip 97.0 0.057 1.2E-06 52.4 16.9 73 146-221 419-491 (517)
185 PF14559 TPR_19: Tetratricopep 96.9 0.005 1.1E-07 41.7 7.0 63 123-189 2-64 (68)
186 KOG3941 Intermediate in Toll s 96.9 0.0093 2E-07 51.6 9.7 95 3-97 57-174 (406)
187 PF12688 TPR_5: Tetratrico pep 96.8 0.033 7E-07 42.6 11.2 57 19-75 9-67 (120)
188 PRK10803 tol-pal system protei 96.8 0.02 4.4E-07 50.4 11.4 103 113-217 144-251 (263)
189 KOG1538 Uncharacterized conser 96.8 0.17 3.6E-06 49.0 17.6 209 13-244 600-845 (1081)
190 KOG2796 Uncharacterized conser 96.7 0.035 7.7E-07 47.7 11.7 58 50-107 181-238 (366)
191 COG4700 Uncharacterized protei 96.7 0.13 2.9E-06 41.9 13.9 128 110-237 87-214 (251)
192 PF13281 DUF4071: Domain of un 96.6 0.35 7.5E-06 44.5 18.3 162 85-249 145-338 (374)
193 KOG4162 Predicted calmodulin-b 96.6 0.38 8.3E-06 47.5 18.9 199 9-211 321-541 (799)
194 PF03704 BTAD: Bacterial trans 96.6 0.022 4.7E-07 45.3 9.3 72 114-186 64-139 (146)
195 KOG0548 Molecular co-chaperone 96.5 0.76 1.7E-05 43.6 20.8 81 8-91 33-114 (539)
196 PF13414 TPR_11: TPR repeat; P 96.5 0.0075 1.6E-07 41.0 5.5 62 112-174 3-65 (69)
197 PF13432 TPR_16: Tetratricopep 96.5 0.016 3.6E-07 38.7 7.1 55 120-175 5-59 (65)
198 PF12921 ATP13: Mitochondrial 96.5 0.041 9E-07 42.4 10.0 80 10-89 1-96 (126)
199 KOG3617 WD40 and TPR repeat-co 96.5 0.22 4.8E-06 49.6 16.6 160 22-209 811-993 (1416)
200 KOG3941 Intermediate in Toll s 96.4 0.032 7E-07 48.4 9.6 100 100-200 53-175 (406)
201 KOG0624 dsRNA-activated protei 96.4 0.69 1.5E-05 41.6 25.1 192 52-249 44-256 (504)
202 PRK10866 outer membrane biogen 96.4 0.35 7.6E-06 42.1 16.3 145 87-249 38-208 (243)
203 PF13512 TPR_18: Tetratricopep 96.4 0.052 1.1E-06 42.5 9.7 93 159-251 22-135 (142)
204 PF04840 Vps16_C: Vps16, C-ter 96.3 0.19 4.2E-06 45.6 14.7 125 83-228 179-303 (319)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.082 1.8E-06 48.9 11.3 135 112-249 397-535 (660)
206 COG0457 NrfG FOG: TPR repeat [ 96.2 0.62 1.3E-05 38.7 23.5 222 24-247 36-267 (291)
207 COG4700 Uncharacterized protei 96.1 0.59 1.3E-05 38.3 16.9 125 77-206 85-216 (251)
208 PF13424 TPR_12: Tetratricopep 96.1 0.024 5.2E-07 39.5 6.3 60 185-244 7-74 (78)
209 COG4235 Cytochrome c biogenesi 96.1 0.24 5.2E-06 43.6 13.4 102 144-247 153-258 (287)
210 COG3898 Uncharacterized membra 96.0 1.3 2.8E-05 40.6 21.5 212 23-244 132-391 (531)
211 PF03704 BTAD: Bacterial trans 95.9 0.055 1.2E-06 43.0 8.5 71 13-84 64-139 (146)
212 PF13371 TPR_9: Tetratricopept 95.9 0.041 9E-07 37.7 6.7 53 121-174 4-56 (73)
213 KOG2041 WD40 repeat protein [G 95.9 0.61 1.3E-05 45.7 16.1 26 183-208 852-877 (1189)
214 smart00299 CLH Clathrin heavy 95.8 0.5 1.1E-05 37.1 13.5 85 49-137 10-94 (140)
215 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.048 1E-06 50.9 8.0 96 144-244 72-173 (453)
216 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.24 5.2E-06 46.3 11.8 65 9-75 73-141 (453)
217 smart00299 CLH Clathrin heavy 95.5 0.92 2E-05 35.6 14.6 45 14-59 10-54 (140)
218 PF13424 TPR_12: Tetratricopep 95.5 0.053 1.1E-06 37.8 5.9 62 12-73 6-73 (78)
219 PRK15331 chaperone protein Sic 95.4 1 2.2E-05 36.2 13.6 86 157-244 47-133 (165)
220 COG5107 RNA14 Pre-mRNA 3'-end 95.3 0.54 1.2E-05 43.7 12.8 141 81-226 397-545 (660)
221 PF13428 TPR_14: Tetratricopep 95.1 0.043 9.2E-07 33.5 4.0 32 218-249 3-34 (44)
222 KOG0543 FKBP-type peptidyl-pro 95.0 0.27 5.9E-06 45.0 10.3 67 183-249 257-324 (397)
223 COG4235 Cytochrome c biogenesi 94.7 0.69 1.5E-05 40.8 11.7 111 111-225 155-269 (287)
224 PF13170 DUF4003: Protein of u 94.7 1 2.2E-05 40.5 13.0 125 62-189 78-223 (297)
225 KOG1538 Uncharacterized conser 94.5 1 2.2E-05 43.9 12.9 94 9-107 554-658 (1081)
226 KOG1920 IkappaB kinase complex 94.4 3.9 8.4E-05 42.9 17.6 103 122-243 949-1053(1265)
227 PF07719 TPR_2: Tetratricopept 94.3 0.12 2.7E-06 29.1 4.4 33 217-249 2-34 (34)
228 COG1729 Uncharacterized protei 94.3 0.55 1.2E-05 40.9 10.1 99 149-248 144-247 (262)
229 PF09205 DUF1955: Domain of un 94.2 2 4.3E-05 33.2 13.3 139 22-179 13-151 (161)
230 PF07079 DUF1347: Protein of u 94.2 5 0.00011 37.7 18.4 222 22-249 17-331 (549)
231 COG1729 Uncharacterized protei 94.2 1.2 2.5E-05 38.9 11.8 103 114-217 144-249 (262)
232 PF04053 Coatomer_WDAD: Coatom 94.1 2.8 6.1E-05 40.0 15.4 155 21-208 271-427 (443)
233 PF00515 TPR_1: Tetratricopept 94.1 0.14 3.1E-06 28.9 4.4 32 217-248 2-33 (34)
234 KOG1130 Predicted G-alpha GTPa 94.1 0.22 4.8E-06 45.6 7.4 129 116-244 199-343 (639)
235 PF13525 YfiO: Outer membrane 93.9 3.4 7.5E-05 34.8 16.3 169 54-236 13-198 (203)
236 PF10300 DUF3808: Protein of u 93.8 6.9 0.00015 37.8 17.6 174 29-208 175-372 (468)
237 PF13428 TPR_14: Tetratricopep 93.8 0.15 3.2E-06 31.1 4.1 29 186-214 4-32 (44)
238 PF13170 DUF4003: Protein of u 93.6 1.9 4.2E-05 38.7 12.7 48 28-75 79-132 (297)
239 KOG0550 Molecular chaperone (D 93.6 2.9 6.3E-05 38.7 13.5 24 17-40 55-78 (486)
240 PF04053 Coatomer_WDAD: Coatom 93.6 2.1 4.5E-05 40.9 13.4 132 13-173 297-428 (443)
241 KOG2041 WD40 repeat protein [G 93.5 5.6 0.00012 39.4 15.9 175 43-240 689-876 (1189)
242 KOG0543 FKBP-type peptidyl-pro 93.5 1.3 2.8E-05 40.8 11.2 124 120-245 216-355 (397)
243 PF10300 DUF3808: Protein of u 92.9 4.7 0.0001 38.9 15.0 156 87-244 194-375 (468)
244 COG3629 DnrI DNA-binding trans 92.7 1.5 3.2E-05 38.8 10.2 79 113-192 154-236 (280)
245 PF13281 DUF4071: Domain of un 92.6 8.5 0.00019 35.6 19.3 166 48-215 143-337 (374)
246 PRK15331 chaperone protein Sic 92.6 1.3 2.8E-05 35.7 8.9 82 58-140 49-133 (165)
247 PF04184 ST7: ST7 protein; In 92.6 9.8 0.00021 36.3 17.2 58 116-173 263-321 (539)
248 COG0457 NrfG FOG: TPR repeat [ 92.5 5.2 0.00011 32.9 23.5 185 60-248 37-234 (291)
249 COG3898 Uncharacterized membra 92.2 9.6 0.00021 35.2 18.9 183 59-249 133-328 (531)
250 PF08631 SPO22: Meiosis protei 92.1 8.2 0.00018 34.3 21.9 134 12-147 37-192 (278)
251 COG3118 Thioredoxin domain-con 91.9 8.6 0.00019 34.1 18.2 139 55-197 143-286 (304)
252 PF09205 DUF1955: Domain of un 91.9 4.9 0.00011 31.1 13.4 119 124-245 14-149 (161)
253 KOG2280 Vacuolar assembly/sort 91.7 4.3 9.4E-05 40.4 12.8 105 87-207 690-794 (829)
254 KOG4555 TPR repeat-containing 91.5 2.8 6E-05 32.4 9.0 85 57-142 54-145 (175)
255 PF13176 TPR_7: Tetratricopept 91.4 0.34 7.4E-06 28.0 3.4 27 218-244 1-27 (36)
256 PF13181 TPR_8: Tetratricopept 91.4 0.39 8.5E-06 27.0 3.6 31 218-248 3-33 (34)
257 PF13431 TPR_17: Tetratricopep 91.4 0.15 3.2E-06 29.2 1.7 27 210-236 6-33 (34)
258 PF13176 TPR_7: Tetratricopept 91.3 0.54 1.2E-05 27.1 4.2 26 13-38 1-26 (36)
259 KOG4570 Uncharacterized conser 91.3 2.1 4.5E-05 38.1 9.3 98 75-176 58-164 (418)
260 COG4105 ComL DNA uptake lipopr 91.3 9.1 0.0002 33.2 15.9 61 189-249 173-237 (254)
261 PF07035 Mic1: Colon cancer-as 91.0 7.3 0.00016 31.6 12.3 100 31-138 14-115 (167)
262 KOG2114 Vacuolar assembly/sort 91.0 8.8 0.00019 38.8 14.2 109 56-173 407-516 (933)
263 PF10602 RPN7: 26S proteasome 90.9 7.9 0.00017 31.8 12.5 59 115-173 39-99 (177)
264 PF00637 Clathrin: Region in C 90.8 0.14 3E-06 40.4 1.7 83 52-137 13-95 (143)
265 PF04184 ST7: ST7 protein; In 90.7 5 0.00011 38.2 11.8 97 152-249 264-379 (539)
266 KOG2280 Vacuolar assembly/sort 90.7 20 0.00043 36.0 16.3 92 144-244 681-772 (829)
267 COG3629 DnrI DNA-binding trans 90.6 1.2 2.6E-05 39.3 7.4 61 184-244 154-215 (280)
268 COG3947 Response regulator con 90.4 12 0.00027 33.1 13.8 145 98-244 150-341 (361)
269 KOG4555 TPR repeat-containing 90.3 7.1 0.00015 30.2 10.7 51 90-140 52-105 (175)
270 PF10602 RPN7: 26S proteasome 90.1 4 8.8E-05 33.6 9.8 58 14-71 39-98 (177)
271 KOG2610 Uncharacterized conser 89.9 8.1 0.00017 34.9 11.8 110 25-135 117-232 (491)
272 KOG1920 IkappaB kinase complex 89.8 15 0.00032 38.9 15.0 78 119-208 972-1051(1265)
273 PF00515 TPR_1: Tetratricopept 89.4 0.4 8.8E-06 27.0 2.5 30 185-214 3-32 (34)
274 PF07079 DUF1347: Protein of u 89.1 4.1 8.8E-05 38.3 9.7 141 56-198 16-182 (549)
275 COG3118 Thioredoxin domain-con 88.9 16 0.00035 32.4 14.3 119 89-211 142-264 (304)
276 KOG2610 Uncharacterized conser 88.7 9.5 0.00021 34.5 11.4 146 94-243 116-274 (491)
277 PF09613 HrpB1_HrpK: Bacterial 88.3 12 0.00026 30.1 11.7 47 124-174 22-71 (160)
278 PF00637 Clathrin: Region in C 88.2 0.41 8.8E-06 37.7 2.6 86 16-108 12-97 (143)
279 COG4649 Uncharacterized protei 88.2 7.6 0.00016 31.7 9.5 120 123-244 69-195 (221)
280 KOG2396 HAT (Half-A-TPR) repea 88.0 26 0.00055 33.6 15.4 227 9-248 313-563 (568)
281 TIGR02508 type_III_yscG type I 88.0 8.6 0.00019 28.1 9.8 88 61-152 20-107 (115)
282 KOG0550 Molecular chaperone (D 87.6 14 0.00031 34.4 12.0 52 122-173 259-313 (486)
283 cd00923 Cyt_c_Oxidase_Va Cytoc 87.4 4.4 9.5E-05 29.4 7.0 60 130-191 25-84 (103)
284 COG4105 ComL DNA uptake lipopr 87.4 19 0.00041 31.3 21.0 57 152-208 172-229 (254)
285 PF13929 mRNA_stabil: mRNA sta 87.2 16 0.00035 32.4 11.8 83 111-193 201-288 (292)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 87.1 4.5 9.8E-05 29.3 6.9 60 28-89 24-84 (103)
287 PF13762 MNE1: Mitochondrial s 86.8 10 0.00022 30.0 9.4 76 85-160 43-128 (145)
288 PF13374 TPR_10: Tetratricopep 86.6 1.8 3.8E-05 25.4 4.3 29 11-39 2-30 (42)
289 PF02284 COX5A: Cytochrome c o 86.5 6.1 0.00013 29.0 7.4 60 130-191 28-87 (108)
290 PF13431 TPR_17: Tetratricopep 86.4 0.96 2.1E-05 25.7 2.8 24 78-101 10-33 (34)
291 PF13174 TPR_6: Tetratricopept 86.3 1.3 2.8E-05 24.4 3.3 29 221-249 5-33 (33)
292 PF13929 mRNA_stabil: mRNA sta 85.9 12 0.00027 33.1 10.5 114 127-240 143-262 (292)
293 PRK11906 transcriptional regul 85.7 33 0.00072 32.6 14.3 134 113-249 252-405 (458)
294 PRK11906 transcriptional regul 85.6 34 0.00074 32.6 14.8 141 96-241 273-432 (458)
295 KOG1941 Acetylcholine receptor 85.5 30 0.00064 31.8 12.8 223 22-244 17-274 (518)
296 TIGR02561 HrpB1_HrpK type III 85.2 12 0.00026 29.6 9.1 19 123-141 55-73 (153)
297 PF07035 Mic1: Colon cancer-as 85.2 19 0.00041 29.3 14.0 124 8-141 26-149 (167)
298 PF11207 DUF2989: Protein of u 85.2 9.9 0.00022 31.8 9.1 75 56-132 117-198 (203)
299 KOG1586 Protein required for f 85.0 24 0.00052 30.3 13.8 156 56-244 24-182 (288)
300 PF07719 TPR_2: Tetratricopept 84.8 1.1 2.3E-05 25.1 2.5 26 186-211 4-29 (34)
301 KOG4570 Uncharacterized conser 84.7 3.4 7.3E-05 36.9 6.5 98 9-108 62-162 (418)
302 KOG2297 Predicted translation 84.7 29 0.00063 31.1 12.4 69 160-236 268-341 (412)
303 smart00028 TPR Tetratricopepti 84.4 2.1 4.7E-05 22.5 3.7 31 218-248 3-33 (34)
304 PF14669 Asp_Glu_race_2: Putat 84.3 22 0.00049 29.5 15.0 93 105-208 100-206 (233)
305 PF13374 TPR_10: Tetratricopep 84.1 2.6 5.6E-05 24.6 4.2 27 113-139 3-29 (42)
306 PF02284 COX5A: Cytochrome c o 83.7 6.6 0.00014 28.8 6.5 60 29-89 28-87 (108)
307 PF08631 SPO22: Meiosis protei 83.4 32 0.00069 30.6 24.4 218 22-243 4-273 (278)
308 KOG0276 Vesicle coat complex C 82.6 33 0.00072 33.7 12.4 149 23-208 598-746 (794)
309 KOG4648 Uncharacterized conser 82.5 4 8.6E-05 36.9 6.1 86 119-215 104-197 (536)
310 KOG2396 HAT (Half-A-TPR) repea 81.8 25 0.00054 33.7 11.2 92 130-223 89-181 (568)
311 COG1747 Uncharacterized N-term 81.7 52 0.0011 31.8 20.4 202 44-251 64-294 (711)
312 PRK09687 putative lyase; Provi 81.6 38 0.00083 30.2 23.2 226 7-251 33-269 (280)
313 PF13512 TPR_18: Tetratricopep 81.2 25 0.00053 27.7 12.7 80 13-93 12-94 (142)
314 PRK09687 putative lyase; Provi 81.2 40 0.00086 30.1 25.6 186 44-243 35-232 (280)
315 PF14853 Fis1_TPR_C: Fis1 C-te 80.3 13 0.00027 23.7 6.3 29 221-249 6-34 (53)
316 KOG4648 Uncharacterized conser 79.8 9.2 0.0002 34.7 7.4 77 89-173 105-184 (536)
317 KOG1585 Protein required for f 79.5 41 0.00089 29.2 12.8 203 12-240 32-251 (308)
318 PF02259 FAT: FAT domain; Int 79.3 50 0.0011 30.1 16.0 64 181-244 144-212 (352)
319 PF08424 NRDE-2: NRDE-2, neces 78.9 11 0.00023 34.5 7.9 29 319-347 160-188 (321)
320 PRK13342 recombination factor 78.4 62 0.0013 30.7 15.5 47 114-160 229-278 (413)
321 PHA02875 ankyrin repeat protei 78.0 27 0.00059 32.9 10.9 172 18-208 6-190 (413)
322 PF07163 Pex26: Pex26 protein; 77.8 29 0.00064 30.6 9.6 88 118-208 89-183 (309)
323 KOG4234 TPR repeat-containing 77.7 24 0.00053 29.6 8.7 91 157-249 105-201 (271)
324 PF13762 MNE1: Mitochondrial s 77.6 33 0.00072 27.1 9.4 83 12-94 40-128 (145)
325 PF11207 DUF2989: Protein of u 77.4 30 0.00065 29.0 9.3 22 214-235 176-197 (203)
326 PF09477 Type_III_YscG: Bacter 77.4 27 0.00059 26.0 9.4 88 59-150 19-106 (116)
327 PF10366 Vps39_1: Vacuolar sor 77.3 23 0.0005 26.4 8.0 27 114-140 41-67 (108)
328 COG4649 Uncharacterized protei 77.3 39 0.00084 27.7 12.8 117 92-209 69-193 (221)
329 COG4455 ImpE Protein of avirul 77.0 16 0.00035 31.0 7.6 78 114-192 3-81 (273)
330 KOG1258 mRNA processing protei 77.0 78 0.0017 31.1 16.5 166 79-249 295-474 (577)
331 PF07163 Pex26: Pex26 protein; 75.7 34 0.00074 30.2 9.5 84 52-135 89-181 (309)
332 PF07721 TPR_4: Tetratricopept 75.6 5.4 0.00012 20.9 3.1 18 87-104 7-24 (26)
333 PF11846 DUF3366: Domain of un 75.5 6.9 0.00015 32.6 5.4 37 211-247 139-175 (193)
334 KOG1941 Acetylcholine receptor 75.2 53 0.0011 30.3 10.8 200 12-211 44-274 (518)
335 PF11846 DUF3366: Domain of un 74.6 14 0.0003 30.8 7.0 56 159-214 120-175 (193)
336 COG4455 ImpE Protein of avirul 74.3 11 0.00024 32.0 6.0 75 149-225 3-81 (273)
337 KOG1550 Extracellular protein 73.7 86 0.0019 31.1 13.2 17 23-39 261-277 (552)
338 cd08819 CARD_MDA5_2 Caspase ac 73.0 27 0.00058 24.9 6.8 38 93-131 48-85 (88)
339 PF10579 Rapsyn_N: Rapsyn N-te 72.7 12 0.00027 26.0 5.0 45 160-204 19-64 (80)
340 PF13181 TPR_8: Tetratricopept 72.4 11 0.00025 20.7 4.3 27 13-39 3-29 (34)
341 PRK15180 Vi polysaccharide bio 72.1 40 0.00087 32.2 9.6 123 123-249 300-424 (831)
342 KOG1585 Protein required for f 71.0 71 0.0015 27.8 14.8 192 28-244 10-218 (308)
343 TIGR02561 HrpB1_HrpK type III 70.7 52 0.0011 26.2 11.0 64 58-125 22-89 (153)
344 KOG1258 mRNA processing protei 70.0 81 0.0018 31.0 11.4 129 82-211 46-179 (577)
345 PF02259 FAT: FAT domain; Int 69.7 88 0.0019 28.4 16.9 64 112-175 146-212 (352)
346 TIGR02508 type_III_yscG type I 68.3 30 0.00065 25.4 6.3 47 121-173 48-94 (115)
347 TIGR03504 FimV_Cterm FimV C-te 67.7 13 0.00027 22.7 3.8 23 118-140 5-27 (44)
348 PF11848 DUF3368: Domain of un 67.5 24 0.00051 21.9 5.1 31 23-53 14-44 (48)
349 PF10579 Rapsyn_N: Rapsyn N-te 66.4 17 0.00036 25.4 4.5 46 195-240 18-67 (80)
350 KOG4077 Cytochrome c oxidase, 64.6 48 0.001 25.5 7.0 56 133-190 70-125 (149)
351 cd00280 TRFH Telomeric Repeat 64.4 45 0.00098 27.5 7.4 60 163-223 85-150 (200)
352 KOG2908 26S proteasome regulat 63.9 58 0.0013 29.7 8.6 83 83-165 77-175 (380)
353 KOG4234 TPR repeat-containing 63.7 56 0.0012 27.5 7.9 86 56-141 105-197 (271)
354 TIGR03504 FimV_Cterm FimV C-te 63.0 19 0.00041 21.9 3.9 24 17-40 5-28 (44)
355 PF09613 HrpB1_HrpK: Bacterial 62.9 80 0.0017 25.4 12.9 18 91-108 54-71 (160)
356 COG4785 NlpI Lipoprotein NlpI, 62.7 19 0.00041 30.6 5.1 59 193-251 75-135 (297)
357 KOG1130 Predicted G-alpha GTPa 61.9 18 0.00039 33.7 5.3 52 20-71 26-80 (639)
358 KOG4077 Cytochrome c oxidase, 61.7 47 0.001 25.6 6.5 43 66-108 69-111 (149)
359 PF11838 ERAP1_C: ERAP1-like C 61.6 1.2E+02 0.0027 27.2 13.8 81 163-244 146-229 (324)
360 PRK10564 maltose regulon perip 60.2 21 0.00047 31.8 5.3 44 42-85 252-296 (303)
361 PF11768 DUF3312: Protein of u 60.1 1.6E+02 0.0034 28.9 11.3 23 86-108 413-435 (545)
362 KOG4279 Serine/threonine prote 59.5 1.9E+02 0.0042 29.6 11.9 173 65-251 182-402 (1226)
363 COG1747 Uncharacterized N-term 59.2 1.8E+02 0.0039 28.3 18.8 164 78-249 63-238 (711)
364 KOG4507 Uncharacterized conser 58.6 63 0.0014 31.8 8.3 87 160-249 620-709 (886)
365 PF06552 TOM20_plant: Plant sp 58.0 40 0.00086 27.8 6.1 51 199-249 51-113 (186)
366 PRK15180 Vi polysaccharide bio 57.5 95 0.0021 29.8 9.2 113 59-174 302-418 (831)
367 PF11848 DUF3368: Domain of un 57.5 43 0.00094 20.7 5.1 31 124-154 14-44 (48)
368 KOG1586 Protein required for f 56.7 1.3E+02 0.0029 26.0 14.8 17 22-38 25-41 (288)
369 cd08819 CARD_MDA5_2 Caspase ac 56.3 71 0.0015 22.8 7.2 68 29-102 20-87 (88)
370 COG2976 Uncharacterized protei 56.1 1.2E+02 0.0026 25.4 14.5 126 114-247 56-190 (207)
371 PF14689 SPOB_a: Sensor_kinase 55.1 21 0.00045 23.5 3.5 25 15-39 27-51 (62)
372 PF11663 Toxin_YhaV: Toxin wit 54.9 15 0.00033 28.5 3.1 29 25-55 109-137 (140)
373 KOG0292 Vesicle coat complex C 54.9 30 0.00064 35.6 5.8 78 152-246 625-702 (1202)
374 PF10345 Cohesin_load: Cohesin 54.4 2.4E+02 0.0052 28.3 15.5 166 7-173 55-251 (608)
375 PF14689 SPOB_a: Sensor_kinase 54.3 36 0.00079 22.4 4.5 24 151-174 27-50 (62)
376 PF13934 ELYS: Nuclear pore co 53.8 1.4E+02 0.0031 25.5 13.4 107 114-230 78-186 (226)
377 COG2976 Uncharacterized protei 53.5 1.3E+02 0.0029 25.1 14.6 86 89-176 97-188 (207)
378 smart00638 LPD_N Lipoprotein N 53.5 2.4E+02 0.0052 28.0 19.2 193 8-208 307-521 (574)
379 PF04097 Nic96: Nup93/Nic96; 53.3 2.5E+02 0.0055 28.3 13.4 218 19-249 266-537 (613)
380 COG5159 RPN6 26S proteasome re 52.9 1.7E+02 0.0037 26.2 15.2 195 17-211 9-234 (421)
381 PF06552 TOM20_plant: Plant sp 52.7 72 0.0016 26.3 6.8 60 179-244 64-135 (186)
382 KOG1550 Extracellular protein 51.3 2.6E+02 0.0056 27.8 15.0 145 27-176 228-393 (552)
383 PF08311 Mad3_BUB1_I: Mad3/BUB 50.7 1.1E+02 0.0024 23.4 8.2 56 49-106 68-124 (126)
384 COG0735 Fur Fe2+/Zn2+ uptake r 50.1 79 0.0017 25.0 6.7 63 32-95 7-69 (145)
385 PRK10564 maltose regulon perip 50.0 35 0.00076 30.5 5.0 39 115-153 260-298 (303)
386 cd08326 CARD_CASP9 Caspase act 49.9 69 0.0015 22.6 5.6 38 94-131 43-80 (84)
387 COG5159 RPN6 26S proteasome re 49.9 1.9E+02 0.0042 25.9 9.6 125 119-243 10-152 (421)
388 COG2909 MalT ATP-dependent tra 49.5 3.3E+02 0.0071 28.5 18.4 224 18-244 367-646 (894)
389 KOG4567 GTPase-activating prot 48.7 1.8E+02 0.0038 26.4 8.9 71 132-208 263-343 (370)
390 PRK10941 hypothetical protein; 48.7 97 0.0021 27.4 7.6 64 186-249 184-248 (269)
391 KOG2066 Vacuolar assembly/sort 48.6 3.2E+02 0.007 28.1 15.9 67 153-232 640-706 (846)
392 PF02847 MA3: MA3 domain; Int 48.5 54 0.0012 24.3 5.3 63 15-79 6-70 (113)
393 KOG0276 Vesicle coat complex C 47.6 3E+02 0.0066 27.5 11.3 135 82-244 615-749 (794)
394 PF11663 Toxin_YhaV: Toxin wit 47.4 13 0.00027 28.9 1.6 33 122-156 105-137 (140)
395 COG4976 Predicted methyltransf 46.6 47 0.001 28.6 5.0 57 193-249 5-62 (287)
396 KOG4507 Uncharacterized conser 46.2 69 0.0015 31.6 6.6 127 99-227 591-721 (886)
397 PF10475 DUF2450: Protein of u 45.8 1.9E+02 0.004 25.9 9.2 107 118-236 104-217 (291)
398 PF04034 DUF367: Domain of unk 45.7 1.4E+02 0.003 23.0 7.8 58 183-241 66-124 (127)
399 PF09670 Cas_Cas02710: CRISPR- 45.3 2.6E+02 0.0057 26.1 12.8 56 120-176 139-198 (379)
400 PF11768 DUF3312: Protein of u 44.9 2.4E+02 0.0052 27.7 10.0 27 14-40 411-437 (545)
401 smart00804 TAP_C C-terminal do 44.7 21 0.00045 23.7 2.2 23 25-47 39-62 (63)
402 PF08967 DUF1884: Domain of un 44.7 35 0.00077 23.8 3.3 27 274-300 10-36 (85)
403 PF10475 DUF2450: Protein of u 44.4 2.1E+02 0.0044 25.7 9.3 108 52-168 104-218 (291)
404 PF12069 DUF3549: Protein of u 44.3 2.6E+02 0.0056 25.7 12.5 89 85-176 170-259 (340)
405 PF04190 DUF410: Protein of un 44.3 2.2E+02 0.0048 25.0 12.2 155 22-195 1-169 (260)
406 PF11817 Foie-gras_1: Foie gra 43.9 1.1E+02 0.0025 26.5 7.4 56 187-242 182-244 (247)
407 PF09454 Vps23_core: Vps23 cor 43.7 42 0.00092 22.4 3.5 52 6-58 3-54 (65)
408 PF07720 TPR_3: Tetratricopept 43.6 64 0.0014 18.5 4.4 29 219-247 4-34 (36)
409 PF09670 Cas_Cas02710: CRISPR- 43.6 2.8E+02 0.0061 26.0 12.1 55 20-75 140-198 (379)
410 PRK13800 putative oxidoreducta 43.6 4.3E+02 0.0093 28.1 20.1 18 44-61 633-650 (897)
411 KOG2908 26S proteasome regulat 43.5 2.2E+02 0.0047 26.2 8.8 82 18-99 82-175 (380)
412 PF04090 RNA_pol_I_TF: RNA pol 43.4 1.8E+02 0.0038 24.5 7.9 116 112-244 41-167 (199)
413 KOG3364 Membrane protein invol 43.0 1.1E+02 0.0023 24.1 6.0 70 180-249 29-104 (149)
414 PF10255 Paf67: RNA polymerase 42.8 1.3E+02 0.0028 28.4 7.8 57 83-139 124-191 (404)
415 COG3947 Response regulator con 42.6 2.6E+02 0.0056 25.2 15.2 58 149-208 281-338 (361)
416 PF10366 Vps39_1: Vacuolar sor 42.5 59 0.0013 24.2 4.6 26 49-74 42-67 (108)
417 PF12926 MOZART2: Mitotic-spin 42.1 1.3E+02 0.0027 21.5 6.9 41 32-72 29-69 (88)
418 PF14853 Fis1_TPR_C: Fis1 C-te 42.0 90 0.0019 19.8 4.9 34 17-52 7-40 (53)
419 KOG3824 Huntingtin interacting 41.9 47 0.001 29.9 4.5 15 159-173 128-142 (472)
420 PF04910 Tcf25: Transcriptiona 41.5 3E+02 0.0064 25.6 12.5 64 111-174 99-166 (360)
421 COG4003 Uncharacterized protei 40.5 40 0.00087 23.5 3.0 21 56-76 41-61 (98)
422 PF02184 HAT: HAT (Half-A-TPR) 40.5 19 0.00041 20.2 1.2 22 199-220 3-24 (32)
423 KOG1464 COP9 signalosome, subu 40.4 2.7E+02 0.0058 24.8 15.2 198 7-204 22-252 (440)
424 KOG2114 Vacuolar assembly/sort 40.3 4.5E+02 0.0098 27.4 16.1 171 17-211 340-517 (933)
425 KOG3807 Predicted membrane pro 39.6 77 0.0017 28.9 5.5 49 159-207 287-335 (556)
426 KOG2062 26S proteasome regulat 39.4 3.6E+02 0.0078 27.7 10.3 125 121-251 510-640 (929)
427 PRK11639 zinc uptake transcrip 39.0 1.4E+02 0.0031 24.2 6.7 61 138-200 17-77 (169)
428 cd07153 Fur_like Ferric uptake 38.7 74 0.0016 23.7 4.8 44 17-60 6-49 (116)
429 KOG2066 Vacuolar assembly/sort 38.5 4.6E+02 0.01 27.0 11.4 24 187-211 509-532 (846)
430 cd08332 CARD_CASP2 Caspase act 37.4 1.4E+02 0.0031 21.3 5.8 35 95-129 48-82 (90)
431 cd07153 Fur_like Ferric uptake 37.2 97 0.0021 23.0 5.2 40 122-161 10-49 (116)
432 COG2178 Predicted RNA-binding 37.1 2.5E+02 0.0054 23.5 7.7 50 89-138 37-95 (204)
433 PF11817 Foie-gras_1: Foie gra 37.1 1.3E+02 0.0029 26.1 6.8 59 150-208 181-243 (247)
434 KOG2297 Predicted translation 37.0 3.2E+02 0.007 24.8 10.4 70 123-203 266-341 (412)
435 KOG0403 Neoplastic transformat 36.3 1.4E+02 0.0031 28.5 6.8 74 116-197 513-588 (645)
436 KOG0687 26S proteasome regulat 35.8 3.5E+02 0.0076 24.8 10.2 94 147-244 104-209 (393)
437 PF11123 DNA_Packaging_2: DNA 35.6 90 0.002 21.4 4.0 30 63-93 14-43 (82)
438 PRK11619 lytic murein transgly 35.2 5E+02 0.011 26.4 21.4 115 126-244 255-374 (644)
439 PF14669 Asp_Glu_race_2: Putat 35.1 1E+02 0.0022 25.8 5.1 163 9-173 6-207 (233)
440 PHA02875 ankyrin repeat protei 34.9 2.8E+02 0.006 26.0 9.1 139 57-208 10-157 (413)
441 KOG2659 LisH motif-containing 34.9 3E+02 0.0064 23.7 8.3 22 87-108 70-91 (228)
442 PF09477 Type_III_YscG: Bacter 34.8 1.9E+02 0.0042 21.6 8.5 81 127-216 21-101 (116)
443 PF09454 Vps23_core: Vps23 cor 34.5 71 0.0015 21.3 3.5 52 42-94 4-55 (65)
444 PRK09462 fur ferric uptake reg 34.4 2.2E+02 0.0048 22.4 7.1 61 36-97 7-68 (148)
445 COG0735 Fur Fe2+/Zn2+ uptake r 34.2 2.3E+02 0.005 22.3 7.3 65 134-200 8-72 (145)
446 cd00280 TRFH Telomeric Repeat 33.6 2.8E+02 0.006 23.1 7.3 40 87-126 117-157 (200)
447 PRK11639 zinc uptake transcrip 32.6 2.3E+02 0.0049 23.0 6.9 60 37-97 17-76 (169)
448 PF01475 FUR: Ferric uptake re 32.6 86 0.0019 23.6 4.3 45 117-161 12-56 (120)
449 KOG0686 COP9 signalosome, subu 32.5 4.4E+02 0.0095 25.0 14.6 26 14-39 153-178 (466)
450 TIGR02710 CRISPR-associated pr 32.4 4.3E+02 0.0093 24.8 10.3 52 20-71 139-196 (380)
451 KOG4279 Serine/threonine prote 32.3 73 0.0016 32.4 4.5 101 113-216 202-320 (1226)
452 COG2178 Predicted RNA-binding 31.9 2.4E+02 0.0052 23.6 6.8 18 123-140 132-149 (204)
453 PF04097 Nic96: Nup93/Nic96; 31.1 5.7E+02 0.012 25.8 12.5 189 11-211 112-354 (613)
454 PHA03100 ankyrin repeat protei 31.0 4.8E+02 0.01 24.9 11.8 144 17-171 38-197 (480)
455 KOG3364 Membrane protein invol 30.8 2.7E+02 0.0058 21.9 7.9 70 144-215 29-103 (149)
456 PF02847 MA3: MA3 domain; Int 30.7 1.1E+02 0.0023 22.6 4.5 26 85-110 6-31 (113)
457 PF02607 B12-binding_2: B12 bi 30.6 61 0.0013 22.1 2.9 34 23-56 13-46 (79)
458 smart00544 MA3 Domain in DAP-5 30.3 2.2E+02 0.0048 20.9 9.0 26 85-110 6-31 (113)
459 PF01475 FUR: Ferric uptake re 30.2 81 0.0018 23.7 3.8 32 17-48 13-44 (120)
460 PF12926 MOZART2: Mitotic-spin 30.0 2.1E+02 0.0045 20.4 7.9 62 45-108 9-70 (88)
461 KOG0376 Serine-threonine phosp 30.0 69 0.0015 30.6 3.8 106 119-229 11-118 (476)
462 PRK10941 hypothetical protein; 30.0 3.9E+02 0.0085 23.6 10.3 74 151-227 185-262 (269)
463 PF03745 DUF309: Domain of unk 29.9 1.7E+02 0.0036 19.3 5.3 46 124-169 11-61 (62)
464 PF12796 Ank_2: Ankyrin repeat 29.5 1.3E+02 0.0028 20.8 4.5 14 92-105 34-47 (89)
465 smart00544 MA3 Domain in DAP-5 29.4 2.3E+02 0.005 20.8 8.8 61 14-76 5-67 (113)
466 PF03943 TAP_C: TAP C-terminal 29.0 18 0.00038 22.8 -0.1 23 25-47 27-50 (51)
467 PF13934 ELYS: Nuclear pore co 28.9 3.7E+02 0.0081 23.0 13.0 106 84-197 79-186 (226)
468 COG5108 RPO41 Mitochondrial DN 28.8 2.8E+02 0.0061 28.1 7.7 75 117-195 33-115 (1117)
469 KOG4567 GTPase-activating prot 28.7 4.5E+02 0.0098 23.9 10.1 71 66-137 263-343 (370)
470 cd04448 DEP_PIKfyve DEP (Dishe 28.5 74 0.0016 22.3 3.0 32 327-359 45-76 (81)
471 PRK02287 hypothetical protein; 28.4 3.3E+02 0.0072 22.2 7.9 60 183-243 107-167 (171)
472 COG5187 RPN7 26S proteasome re 28.1 4.5E+02 0.0098 23.7 10.7 28 183-210 115-142 (412)
473 KOG3636 Uncharacterized conser 28.0 5.2E+02 0.011 24.8 8.9 82 41-123 178-271 (669)
474 KOG2582 COP9 signalosome, subu 27.8 5E+02 0.011 24.2 9.7 18 56-73 193-210 (422)
475 PF10155 DUF2363: Uncharacteri 27.2 2.9E+02 0.0063 21.2 9.8 94 14-107 21-124 (126)
476 PLN03192 Voltage-dependent pot 27.2 3.6E+02 0.0078 28.3 9.0 137 58-208 534-677 (823)
477 PF04762 IKI3: IKI3 family; I 27.1 8E+02 0.017 26.3 14.0 205 51-289 699-928 (928)
478 PRK13341 recombination factor 27.1 7.2E+02 0.016 25.7 15.9 107 41-161 192-307 (725)
479 PF09868 DUF2095: Uncharacteri 26.7 2E+02 0.0043 21.7 4.9 37 52-89 67-103 (128)
480 PF12862 Apc5: Anaphase-promot 25.8 2.5E+02 0.0054 20.0 8.1 21 155-175 49-69 (94)
481 PF07064 RIC1: RIC1; InterPro 25.7 4.6E+02 0.01 23.0 13.8 62 188-249 184-253 (258)
482 KOG1498 26S proteasome regulat 25.3 5.8E+02 0.013 24.1 15.4 171 18-192 20-257 (439)
483 PF09986 DUF2225: Uncharacteri 25.2 3.7E+02 0.0079 22.8 7.2 23 222-244 171-193 (214)
484 KOG2063 Vacuolar assembly/sort 25.0 5.1E+02 0.011 27.4 9.2 113 115-228 507-638 (877)
485 COG4003 Uncharacterized protei 24.7 2E+02 0.0043 20.2 4.3 35 7-41 26-61 (98)
486 cd08780 Death_TRADD Death Doma 24.7 2.7E+02 0.0058 20.0 5.9 52 152-206 37-88 (90)
487 KOG4642 Chaperone-dependent E3 24.4 3E+02 0.0066 24.0 6.3 86 156-244 19-106 (284)
488 KOG0686 COP9 signalosome, subu 24.0 6.3E+02 0.014 24.0 12.9 158 81-244 150-332 (466)
489 TIGR03184 DNA_S_dndE DNA sulfu 23.9 2.2E+02 0.0047 21.1 4.8 36 126-161 61-98 (105)
490 cd04449 DEP_DEPDC5-like DEP (D 23.8 91 0.002 21.9 2.8 33 326-359 46-78 (83)
491 PRK14700 recombination factor 23.7 5.5E+02 0.012 23.2 14.7 123 27-162 41-176 (300)
492 cd08318 Death_NMPP84 Death dom 23.3 1.8E+02 0.0039 20.5 4.2 40 163-205 46-85 (86)
493 smart00386 HAT HAT (Half-A-TPR 23.3 1.3E+02 0.0027 15.6 4.1 15 162-176 2-16 (33)
494 PF01726 LexA_DNA_bind: LexA D 23.1 63 0.0014 21.5 1.7 56 272-350 6-61 (65)
495 PRK13800 putative oxidoreducta 22.5 9.6E+02 0.021 25.6 21.6 111 8-126 632-742 (897)
496 PF03622 IBV_3B: IBV 3B protei 22.5 32 0.0007 22.2 0.2 31 333-370 22-52 (64)
497 PF08311 Mad3_BUB1_I: Mad3/BUB 22.4 3.6E+02 0.0077 20.6 9.2 43 130-172 81-124 (126)
498 COG5210 GTPase-activating prot 21.6 5.2E+02 0.011 25.2 8.5 81 27-109 319-405 (496)
499 PF10255 Paf67: RNA polymerase 21.5 7E+02 0.015 23.6 8.9 60 149-208 124-189 (404)
500 cd04440 DEP_2_P-Rex DEP (Dishe 21.2 1.3E+02 0.0029 21.7 3.1 33 326-359 53-85 (93)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-72 Score=563.75 Aligned_cols=363 Identities=29% Similarity=0.522 Sum_probs=353.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 3 f~~m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|++||..
T Consensus 282 f~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
+||+||++|+++|++++|.++|++|.+||.++||+||.+|+++|+.++|.++|++|.+.|+.||..||+++|++|++.|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
+++|.++|+.|.+.+|+.|+..+|+++|++|++.|++++|.+++++ ++..|+..+|++|+.+|+.+|+++.|..+++++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~-~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR-APFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999988789999999999999999999999999999999 888999999999999999999999999999999
Q ss_pred hccCCCC---cc-------------------------------c-hhheecceEEEEecCC---cchHHHHHHHHHHHHH
Q 047393 243 LELDPGM---YV-------------------------------G-CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEEN 284 (373)
Q Consensus 243 ~~~~P~~---y~-------------------------------~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 284 (373)
.+++|++ |+ | +|++.+..+|.|+.++ |...+.++.+.++..+
T Consensus 521 ~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 600 (697)
T PLN03081 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600 (697)
T ss_pred hCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHH
Confidence 9999976 44 5 8999999999999987 7788889999999999
Q ss_pred HHHCCCccCCch---------------hhhHHHHHHhhhccCCCCCcEEEEeeccccCChhHHHHHHHhHhCceEEEecC
Q 047393 285 MKELGFVLNRSL---------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDP 349 (373)
Q Consensus 285 m~~~g~~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 349 (373)
|++.|+.||... +|+|++|+|+++++++++.|++++|||++|+|||+++|++|++.+|+|++||.
T Consensus 601 ~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 680 (697)
T PLN03081 601 ISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDA 680 (697)
T ss_pred HHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecC
Confidence 999999999764 89999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCccCCCCCc
Q 047393 350 GSFHHFKDGKCSCKDAY 366 (373)
Q Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (373)
++||||++|.|+|++||
T Consensus 681 ~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 681 SRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CccccCCCCcccccccC
Confidence 99999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-66 Score=530.46 Aligned_cols=359 Identities=31% Similarity=0.540 Sum_probs=348.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 3 f~~m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
|++|++||+++||++|.+|++.|++++|+++|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 7889999999999999999999999999999999986 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
++|+||++|+++|++++|.++|+++ ++|.++||+||.+|+++|+.++|.++|++|.+.|+.||..||+++|.+|++.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
+++|.++|++|.+.+|+.|+..+|++++++|++.|++++|.+++++ |+.+||..+|++|+.+|..+|+.+.|+.+.+++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999987789999999999999999999999999999999 888999999999999999999999999999999
Q ss_pred hccCCCC---cc-------------------------------c-hhheecceEEEEecCC---cchHHHHHHHHHHHHH
Q 047393 243 LELDPGM---YV-------------------------------G-CWIEIQNKIYEFVSNE---ELTSEVSDKLAEIEEN 284 (373)
Q Consensus 243 ~~~~P~~---y~-------------------------------~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 284 (373)
.+++|++ |+ | +|++.+.++|.|..++ |...+++..+.++..+
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 9999988 44 6 9999999999999988 8889999999999999
Q ss_pred HHHCCCccCCch--------------hhhHHHHHHhhhccCCCCCcEEEEeeccccCChhHHHHHHHhHhCceEEEecCC
Q 047393 285 MKELGFVLNRSL--------------YQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350 (373)
Q Consensus 285 m~~~g~~p~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 350 (373)
|++.|+.||+.. +|+|++|+||++++++++.|++++||+++|+|||++.|++|++.+|+|++||.+
T Consensus 764 ~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 843 (857)
T PLN03077 764 MKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTE 843 (857)
T ss_pred HHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCC
Confidence 999999999653 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccCCCC
Q 047393 351 SFHHFKDGKCSCKD 364 (373)
Q Consensus 351 ~~~~~~~~~~~~~~ 364 (373)
+||||++|.|+|+|
T Consensus 844 rfh~f~~g~csc~d 857 (857)
T PLN03077 844 QFHHFKDGECSCGD 857 (857)
T ss_pred cceeCCCCcccCCC
Confidence 99999999999996
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-50 Score=401.55 Aligned_cols=350 Identities=16% Similarity=0.225 Sum_probs=300.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 3 f~~m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
+++|.++++.|.+. |+.||..+|++||++|+++|++++|.++|++ |. +||..+||+||.+|+++|+.++|.++|++|
T Consensus 341 ~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 341 LEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDR-MP-RKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred hHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999765 9999999999999999999999999999999 66 689999999999999999999999999999
Q ss_pred hc--cCCCCccchhheecceEEEEecCCcchHHHHHHHHHHHHHHHH-CCCccCCchhhhHHH--------HHHhhhccC
Q 047393 243 LE--LDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKE-LGFVLNRSLYQTKMK--------AVALGLISF 311 (373)
Q Consensus 243 ~~--~~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~-~g~~p~~~~~~~~~~--------~~~~~~~~~ 311 (373)
.+ +.||. .+|..++......+..+++.++++.|.+ .|+.|+..+|....- .-|..++..
T Consensus 418 ~~~g~~Pd~----------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 418 IAEGVAPNH----------VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHhCCCCCH----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 97 55554 3333333334455567888999999976 699999998765322 223344433
Q ss_pred CCCCc-----EEEEeeccccCChhHHHHHHHhHhCceEEEecCCccccccCCccCCCCCccc
Q 047393 312 PHGMP-----TRVIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAYGS 368 (373)
Q Consensus 312 ~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (373)
.+..| ..++...+..|+.+.+...+.++.+ +-+.+...|....+..|.+|. |+.
T Consensus 488 ~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~-~~~ 546 (697)
T PLN03081 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR-QAE 546 (697)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC-HHH
Confidence 33322 1244555666667766666666653 334445667777777777776 543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-50 Score=406.05 Aligned_cols=286 Identities=17% Similarity=0.195 Sum_probs=250.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 3 f~~m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
|..|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 429 f~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTP----EKNSLSWTFIISARVNHGHPSEALDLFKDKQW--RYTSMNPTTFRSALKA 156 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~ 156 (373)
+|++||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.. .|+.||..||+++|.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 99999999999999999999999986 58999999999999999999999999999976 6789999999999999
Q ss_pred HHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 047393 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP--GKLCPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 157 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~ 234 (373)
|++.|++++|.++|++|.+. |+.|+..+|+++|.+|++.|++++|.++|++|.. +.||..+|+++|.+|++.|++++
T Consensus 589 y~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999655 9999999999999999999999999999999554 67999999999999999999999
Q ss_pred HHHHHHHHhc--cCCCCccchhheecceEEEEecCCcchHHHHHHHHHHHHHHHHCCCccCCchhhh
Q 047393 235 AKYALDKLLE--LDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQT 299 (373)
Q Consensus 235 A~~~~~~m~~--~~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ 299 (373)
|.+++++|.+ ..|+. .+|+.++..++..+..+.+.+++++|++.|+.||..+|+.
T Consensus 668 A~~l~~eM~k~G~~pd~----------~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~ 724 (1060)
T PLN03218 668 AFEILQDARKQGIKLGT----------VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724 (1060)
T ss_pred HHHHHHHHHHcCCCCCH----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999987 33443 3333333334445556777777777777777777777654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-50 Score=410.89 Aligned_cols=298 Identities=18% Similarity=0.241 Sum_probs=271.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 3 f~~m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
+||+||.+|+++|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
++.|.++++.|.+. |+.|+..+||+||++|+++|++++|.++|++ |. +||..+|+++|.+|++.|+.++|..+|++|
T Consensus 405 ~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~-m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 405 LDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHN-IP-EKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999665 9999999999999999999999999999999 76 689999999999999999999999999999
Q ss_pred hc-cCCCC--ccc--------h---------------hh------------------------------eecceEEEEec
Q 047393 243 LE-LDPGM--YVG--------C---------------WI------------------------------EIQNKIYEFVS 266 (373)
Q Consensus 243 ~~-~~P~~--y~~--------~---------------~~------------------------------~~~~~~~~~~~ 266 (373)
.+ ..|+. |.. + .+ ..+...|+.++
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 86 67777 320 0 00 12222333344
Q ss_pred CCcchHHHHHHHHHHHHHHHHCCCccCCchhhhHHHH
Q 047393 267 NEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKA 303 (373)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~ 303 (373)
.++...+..+.+.+++++|.+.|+.||..||.+...+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 4445555678899999999999999999998764433
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-48 Score=390.71 Aligned_cols=319 Identities=14% Similarity=0.178 Sum_probs=291.2
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
.||.++||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+||+|
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCHHHHHHHHccCC------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 88 ININSRCGKIDDADLAFKSTP------EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
|.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 999999999999999999995 57999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047393 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP--GKLCPLIWRTLLLSSRVHGDMKLAKYAL 239 (373)
Q Consensus 162 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 239 (373)
++++|.++|++|.+. |+.||..+|+++|++|++.|++++|.++|++|.+ ..||..+|++||.+|++.|++++|.++|
T Consensus 629 ~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 629 DWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999665 9999999999999999999999999999999655 6799999999999999999999999999
Q ss_pred HHHhccCCCCccchhheecceEEEEecCCcchHHHHHHHHHHHHHHHHCCCccCCchhhhHHHHHHhhhccCCCCCcEEE
Q 047393 240 DKLLELDPGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRV 319 (373)
Q Consensus 240 ~~m~~~~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (373)
++|.+.+ +.++..+|+.++..++..+..+++.+++++|++.|+.||..+|.+ +
T Consensus 708 ~eM~~~g--------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s-------------------L 760 (1060)
T PLN03218 708 EDIKSIK--------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI-------------------L 760 (1060)
T ss_pred HHHHHcC--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH-------------------H
Confidence 9998732 223334455555556667778999999999999999999999975 4
Q ss_pred EeeccccCChhHHHHHHHhHhCceEEEecCCccccc
Q 047393 320 IKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHF 355 (373)
Q Consensus 320 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 355 (373)
+..++..|+.+.|..++.+|...|+. ++...|+..
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsL 795 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCI 795 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence 45667789999999999999998876 444445444
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=5.7e-18 Score=158.96 Aligned_cols=235 Identities=12% Similarity=0.021 Sum_probs=160.1
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID---SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC 86 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 86 (373)
+..+|..+...+.+.|++++|.++++.+...+..++ ...+..+...+.+.|++++|..+|+.+.+.. +++..+++.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 445677777777777777777777777766432221 2346666777777777777777777776543 345667777
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCC--------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 87 LININSRCGKIDDADLAFKSTPEKN--------SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~d--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 7777777777777777777665321 1234556666777777777777777776653 233556666777777
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPS--EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 236 (373)
+.|++++|.++++++.+. .|+ ..+++.++.+|.+.|+.++|.+.++++....|+...+..+...+.+.|++++|.
T Consensus 226 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 777777777777777543 232 345677777777777777777777776556676666677777777777777777
Q ss_pred HHHHHHhccCCCC
Q 047393 237 YALDKLLELDPGM 249 (373)
Q Consensus 237 ~~~~~m~~~~P~~ 249 (373)
.+++++.+..|+.
T Consensus 303 ~~l~~~l~~~P~~ 315 (389)
T PRK11788 303 ALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHhCcCH
Confidence 7777777766655
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=3e-17 Score=154.06 Aligned_cols=234 Identities=13% Similarity=0.068 Sum_probs=197.8
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc----hhHHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH----PAVGNCL 87 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~l 87 (373)
..|+.+...|.+.|++++|+++|+++.+. -+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 56889999999999999999999999875 234677899999999999999999999999988653332 2245677
Q ss_pred HHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047393 88 ININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 164 (373)
...+.+.|++++|...|+++.+ | +..++..+...+.+.|++++|.++|+++.+.+......+++.+..+|.+.|+++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 8889999999999999998763 3 466788899999999999999999999987643333567889999999999999
Q ss_pred HHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH
Q 047393 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV---HGDMKLAKYALDK 241 (373)
Q Consensus 165 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~ 241 (373)
+|...++++.+. .|+...+..+...+.+.|++++|..++++++...|+..+++.++..+.. .|+.+++..++++
T Consensus 267 ~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 267 EGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 999999999654 5777777899999999999999999999988888999999999988775 5588999999998
Q ss_pred Hhc--cCCCC
Q 047393 242 LLE--LDPGM 249 (373)
Q Consensus 242 m~~--~~P~~ 249 (373)
+.+ +.|+.
T Consensus 344 ~~~~~~~~~p 353 (389)
T PRK11788 344 LVGEQLKRKP 353 (389)
T ss_pred HHHHHHhCCC
Confidence 886 44444
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=6e-16 Score=159.73 Aligned_cols=235 Identities=11% Similarity=-0.024 Sum_probs=189.2
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.+...+..+...|...|++++|.++++++.+. .+.+..+|..+..++.+.|++++|...++.+.+.. +.+...+..+.
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 45667888888888999999999999888764 34566788888888888899999999998887764 45677788888
Q ss_pred HHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
.+|.+.|++++|...|+++.+ .+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 888888999999988887653 357788888888888888888888888887775 5566777788888888888888
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
|...|+.+... .|+..++..+..++.+.|+.++|.+.+++++...| ++..++.+...|...|+.++|...|+++.+
T Consensus 722 A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888888654 46557777788888888888888888888666444 567888888888888888888888888888
Q ss_pred cCCCC
Q 047393 245 LDPGM 249 (373)
Q Consensus 245 ~~P~~ 249 (373)
..|++
T Consensus 799 ~~p~~ 803 (899)
T TIGR02917 799 KAPDN 803 (899)
T ss_pred hCCCC
Confidence 88876
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=7.5e-16 Score=159.02 Aligned_cols=338 Identities=10% Similarity=-0.004 Sum_probs=257.4
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.+..+++.+...+.+.|++++|...|+++...+ +.+...+..+...+.+.|++++|.++++.+.+.. +.+..+|..+.
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 467889999999999999999999999998753 3456678889999999999999999999998754 56788999999
Q ss_pred HHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
..|.+.|++++|.+.|+++.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998753 367788999999999999999999999998763 4568899999999999999999
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
|.++++.+.+. .+++...+..+...+.+.|++++|.+.|++++...|+..++..+..++.+.|++++|.+.++.+.+.
T Consensus 688 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 688 AKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999664 2567788888999999999999999999998888888888999999999999999999999999998
Q ss_pred CCCC---ccc-hhheecceEEEEecCCcchHHHHHHHHHHHHHHHHCCCccCCch-hhh-----------HHHHHHhhhc
Q 047393 246 DPGM---YVG-CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSL-YQT-----------KMKAVALGLI 309 (373)
Q Consensus 246 ~P~~---y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~-~~~-----------~~~~~~~~~~ 309 (373)
.|++ +.. +.+. ...+.++.+...++.+.+.. |+... +.. +.+......+
T Consensus 766 ~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 830 (899)
T TIGR02917 766 HPNDAVLRTALAELY-------------LAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKDPRALEYAEKAL 830 (899)
T ss_pred CCCCHHHHHHHHHHH-------------HHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 8888 221 1111 11122455555555555442 33222 111 1111122222
Q ss_pred cCCCCCcEE---EEeeccccCChhHHHHHHHhHhCceEEEecCCccccccCCccCCCCCccc
Q 047393 310 SFPHGMPTR---VIKSVGMCGYSHSACRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAYGS 368 (373)
Q Consensus 310 ~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (373)
...+..+.. +-..+...|+.++|..++.++.+.+- .++..+.+.....|..|+++++
T Consensus 831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP--EAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCCHHHH
Confidence 222222211 11234567889999999999987553 2566666666666666665543
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.3e-12 Score=116.20 Aligned_cols=233 Identities=16% Similarity=0.181 Sum_probs=191.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.+-.||.+||.|+|+-...+.|.+++++-.....+.+..+||.+|.+-. +....+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 3557899999999999999999999999998888999999999998754 333488999999999999999999999
Q ss_pred HHhHhcCCHHHHH----HHHccCC----CCChhHHHHHHHHHHhCCChHH-HHHHHHHHHHc----CCC----CCHHHHH
Q 047393 89 NINSRCGKIDDAD----LAFKSTP----EKNSLSWTFIISARVNHGHPSE-ALDLFKDKQWR----YTS----MNPTTFR 151 (373)
Q Consensus 89 ~~~~~~g~~~~A~----~~~~~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~----p~~~t~~ 151 (373)
.+.++.|+++.|. +++.+|+ +|...+|..+|..+++.+++.+ |..++.+++.. -++ -|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999988764 4556665 6899999999999999998855 45555555432 222 2567788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcC---CCCC---HhHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHH
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYH---IEPS---EEHYSIMVEALGRAGMFEEVLEFIKGIVP--GKLCPLIWRTLL 223 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g---~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~li 223 (373)
+.++.|.+..+.+.|.++..-.....+ +.|+ ...|..+..+.|....++.-...++.|++ ..|+..+-.-++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 899999999999999999887743212 2343 24556788899999999999999999777 668889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc
Q 047393 224 LSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
++....|.++-.-+++..++..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHh
Confidence 9999999999999999988874
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.58 E-value=1.8e-12 Score=128.94 Aligned_cols=230 Identities=14% Similarity=0.019 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
.|..+...+.+.|++++|.+.|++.... .|+ ...+..+..++...|+.++|...+..+..... .+...+..+ ..+
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l 187 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSF 187 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHH
Confidence 3444444444555555555555554432 232 23344444445555555555555554433321 112222222 124
Q ss_pred HhcCCHHHHHHHHccCCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH--
Q 047393 92 SRCGKIDDADLAFKSTPEK----NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE-- 165 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-- 165 (373)
.+.|++++|...++.+.+. +...+..+..++.+.|++++|+..+++..+.. +.+...+..+...+...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhH
Confidence 4455555555555443321 12222333444555555555555555555442 2234445555555555665553
Q ss_pred --HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 166 --AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 166 --a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
|...+++..+.. +.+...+..+...+.+.|++++|...+++++...|+ +..+..+..++.+.|++++|...++.+
T Consensus 267 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 267 LQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555554321 223455556666666666666666666665554453 345555556666666666666666666
Q ss_pred hccCCCC
Q 047393 243 LELDPGM 249 (373)
Q Consensus 243 ~~~~P~~ 249 (373)
.+..|+.
T Consensus 345 l~~~P~~ 351 (656)
T PRK15174 345 AREKGVT 351 (656)
T ss_pred HHhCccc
Confidence 6655554
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.58 E-value=1.9e-12 Score=128.64 Aligned_cols=234 Identities=13% Similarity=0.007 Sum_probs=191.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
.+...|..+...+...|++++|.+.++++.... |+. ..+..+ ..+.+.|++++|...++.+.+..-.++...+..+
T Consensus 142 ~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l 218 (656)
T PRK15174 142 GNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLA 218 (656)
T ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 356788899999999999999999999887643 333 233333 3477889999999999998776533445555666
Q ss_pred HHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047393 88 ININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSE----ALDLFKDKQWRYTSMNPTTFRSALKAYALM 160 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 160 (373)
...+.+.|++++|...|++..+ .+...+..+...+...|++++ |...|++..+.. +.+...+..+...+.+.
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 7889999999999999998763 367788889999999999986 899999988763 34567889999999999
Q ss_pred CCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHH
Q 047393 161 GLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLI-WRTLLLSSRVHGDMKLAKYA 238 (373)
Q Consensus 161 g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~ 238 (373)
|++++|...+++..+. .| +...+..+..+|.+.|++++|...|++++...|+... +..+..++...|+.++|...
T Consensus 298 g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 298 GQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999998764 44 4567778889999999999999999997777786544 44456788999999999999
Q ss_pred HHHHhccCCCC
Q 047393 239 LDKLLELDPGM 249 (373)
Q Consensus 239 ~~~m~~~~P~~ 249 (373)
|++..+..|+.
T Consensus 375 l~~al~~~P~~ 385 (656)
T PRK15174 375 FEHYIQARASH 385 (656)
T ss_pred HHHHHHhChhh
Confidence 99999988886
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.55 E-value=5.6e-12 Score=125.20 Aligned_cols=231 Identities=12% Similarity=-0.013 Sum_probs=166.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
+...|+.+...+...|++++|+..|++..+. .|+ ..+|..+...+...|++++|...++..++.. +.+..+|..+.
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg 406 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRA 406 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4456777777778888888888888887763 454 4467777777788888888888888887654 44567788888
Q ss_pred HHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
..|...|++++|...|++..+ | +...|..+...+.+.|++++|+..|++..+.. +-+...++.+...+...|++++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHH
Confidence 888888888888888877653 3 45667777778888888888888888877652 3346777778888888888888
Q ss_pred HHHHHHHhHHHcCCCCCH-h-------HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 047393 166 AYRLFLSMEEVYHIEPSE-E-------HYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 236 (373)
|...|++..+. .|+. . .++.....+...|++++|.+++++++...|+ ...+..+...+.+.|++++|.
T Consensus 486 A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 486 AIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 88888877542 3321 1 1122222334468888888888887666664 456778888888888888888
Q ss_pred HHHHHHhccCC
Q 047393 237 YALDKLLELDP 247 (373)
Q Consensus 237 ~~~~~m~~~~P 247 (373)
..|++..++.+
T Consensus 563 ~~~e~A~~l~~ 573 (615)
T TIGR00990 563 KLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHhc
Confidence 88888877543
No 15
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=2.1e-14 Score=92.39 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN 58 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 58 (373)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999885
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=1.1e-11 Score=126.81 Aligned_cols=230 Identities=13% Similarity=0.040 Sum_probs=189.2
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+...|..+..++.. ++.++|+..|.+.... .|+......+..++.+.|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56778888877776 8999999988887764 477665555566667899999999999987554 455556677788
Q ss_pred HhHhcCCHHHHHHHHccCCCCChhHHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPEKNSLSWT---FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~d~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
.+.+.|++++|...|++..+.++..++ .+.....+.|++++|...+++..+. .|+...+..+...+.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 899999999999999877654332233 3333444569999999999999876 57788999999999999999999
Q ss_pred HHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 167 YRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
...+++.... .| +...++.+...+...|+.++|.+.+++++...| ++..+..+..++...|++++|...+++..+
T Consensus 629 ~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998654 45 667888888899999999999999999888778 578999999999999999999999999999
Q ss_pred cCCCC
Q 047393 245 LDPGM 249 (373)
Q Consensus 245 ~~P~~ 249 (373)
.+|+.
T Consensus 706 l~P~~ 710 (987)
T PRK09782 706 DIDNQ 710 (987)
T ss_pred cCCCC
Confidence 99987
No 17
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=1.2e-13 Score=88.83 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=40.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047393 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159 (373)
Q Consensus 110 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 159 (373)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=3.5e-11 Score=119.54 Aligned_cols=222 Identities=11% Similarity=-0.042 Sum_probs=181.1
Q ss_pred cCCHhHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047393 24 AKDYEMVHELLERIQLCC-GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 24 ~g~~~~A~~l~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
.+++++|++.|++..+.+ ..| +...++.+...+...|++++|...++..++.. +.+...|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 368999999999998765 345 34567788888889999999999999998753 334668888999999999999999
Q ss_pred HHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcC
Q 047393 102 LAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178 (373)
Q Consensus 102 ~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g 178 (373)
..|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99987653 367889999999999999999999999998764 345677888888999999999999999998654
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-L-------IWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 179 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+.+...++.+...+...|++++|.+.|++++...|+. . .++.....+...|++++|..++++..+++|+.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 24467889999999999999999999999988766632 1 12222233344699999999999999998877
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.43 E-value=2.5e-11 Score=112.72 Aligned_cols=227 Identities=13% Similarity=0.064 Sum_probs=157.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHh
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISH-PAVGNCLININ 91 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~ 91 (373)
|-.|-..|...+.+++|+..|.+... ..|+. ..+..+...|-..|+++.|...|++.++. .|+ ...|+.|..++
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanAL 330 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANAL 330 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHH
Confidence 44444455555555555555544443 33432 34445555555666677777777666553 344 56777777777
Q ss_pred HhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 047393 92 SRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 167 (373)
-..|++.+|++.+.+... | -..+.+.|.+.|...|++++|..+|....+- .|. ...++.|...|-+.|++++|.
T Consensus 331 kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 331 KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHH
Confidence 777777777777766542 2 3556677777777778888887777776653 343 456777888888888888888
Q ss_pred HHHHHhHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 168 RLFLSMEEVYHIEPSE-EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
..|++.. .+.|+. ..|+.+-..|-..|+.+.|.+.+.+++.+.|.. ..++.|...|...|++.+|+.-|+....+
T Consensus 409 ~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 409 MCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 8888775 457754 677888888888888888888888877777753 57788888888888888888888888888
Q ss_pred CCCC
Q 047393 246 DPGM 249 (373)
Q Consensus 246 ~P~~ 249 (373)
+||-
T Consensus 486 kPDf 489 (966)
T KOG4626|consen 486 KPDF 489 (966)
T ss_pred CCCC
Confidence 8876
No 20
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.43 E-value=4.4e-13 Score=101.70 Aligned_cols=55 Identities=45% Similarity=0.846 Sum_probs=52.4
Q ss_pred hhhhHHHHHHhhhccCCCCCcEEEEeec-cccCChhHHHHHHHhHhCceEEEecCCcccccc
Q 047393 296 LYQTKMKAVALGLISFPHGMPTRVIKSV-GMCGYSHSACRFMSTIIERELVVKDPGSFHHFK 356 (373)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 356 (373)
.+|+|++|+|+++++. ++++|+ ++|+||++++++++++.+|.|++||+++||||+
T Consensus 61 ~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 61 CYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred hccHHHHHHHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 3799999999999987 899999 999999999999999999999999999999996
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.42 E-value=9.7e-12 Score=115.40 Aligned_cols=231 Identities=15% Similarity=0.115 Sum_probs=190.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
+.|+.|-..+-.+|+...|++.|.+... +.|+- ..|-.|-+.|...+.+++|...|.+..... +-..+++..+...
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~i 295 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACI 295 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEE
Confidence 5688888888888998899988888876 55653 467778888888888888888888776542 2336677778888
Q ss_pred hHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047393 91 NSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 167 (373)
|-..|.+|-|+..+++..+ | -...|+.|..++-..|++.+|.+.+.+.+... +--..+.+.|-+.|...|.+++|.
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHH
Confidence 8899999999999988764 3 36789999999999999999999999887752 334578889999999999999999
Q ss_pred HHHHHhHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 168 RLFLSMEEVYHIEPS-EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
.+|....+ +.|. ....+.|...|-..|++++|..-++++++++|+. ..|+.+...|...|+++.|.+.+.+.+.+
T Consensus 375 ~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 375 RLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 99987754 3554 4678889999999999999999999988999975 68999999999999999999999999998
Q ss_pred CCCC
Q 047393 246 DPGM 249 (373)
Q Consensus 246 ~P~~ 249 (373)
.|.-
T Consensus 452 nPt~ 455 (966)
T KOG4626|consen 452 NPTF 455 (966)
T ss_pred CcHH
Confidence 8865
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=1.3e-12 Score=116.89 Aligned_cols=229 Identities=17% Similarity=0.131 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047393 16 LLLKACIKAKDYEMVHELLERIQLCCGFIDSYS-ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94 (373)
Q Consensus 16 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 94 (373)
.+...+.+.|++++|++++++.....-+|+... |..+...+...++.+.|.+.++.+.+.+- -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 456777889999999999966554432454444 44455556678899999999999987763 356677777777 688
Q ss_pred CCHHHHHHHHccCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 95 GKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 95 g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
+++++|.+++...- .++...+..++..+.+.++++++.+++++..+.. .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998887663 3466777888888999999999999999876543 35577788888888999999999999999
Q ss_pred HhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 172 SMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP-GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 172 ~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+..+. .| |....+.++..+...|+.+++.+++..... ...|+..|..+..++...|+.++|...+++.....|++
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 98765 56 577888899999999999987777776333 23466788889999999999999999999999988887
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=1.4e-12 Score=116.65 Aligned_cols=227 Identities=15% Similarity=0.131 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
|..-|..+.......+++++|.+.++++...+.. +...+..++.. ...+++++|.+++....+. .++...+...+.
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~ 118 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHH
Confidence 4444554555556789999999999999876432 45566667666 6889999999999877554 356777888899
Q ss_pred HhHhcCCHHHHHHHHccCC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 047393 90 INSRCGKIDDADLAFKSTP-----EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLV 163 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 163 (373)
.+.+.++++++.+++++.. +.+...|..+...+.+.|++++|++.+++..+. .| |....+.++..+...|+.
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCh
Confidence 9999999999999998754 347788899999999999999999999999887 45 577888999999999999
Q ss_pred HHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
+++..+++...+.. +.|...+..+..+|...|+.++|+.+|++..+..| |+.....+..++...|+.++|.++.+++
T Consensus 197 ~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 197 DEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999986652 56777888999999999999999999999776566 7888889999999999999999998877
Q ss_pred hc
Q 047393 243 LE 244 (373)
Q Consensus 243 ~~ 244 (373)
.+
T Consensus 275 ~~ 276 (280)
T PF13429_consen 275 LR 276 (280)
T ss_dssp --
T ss_pred cc
Confidence 64
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=4.3e-10 Score=96.92 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHH
Q 047393 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISAR 122 (373)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~ 122 (373)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556667777777888888888888776653 34466777777788888888888888876542 3456677777788
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 201 (373)
...|++++|.+.+++..+....| ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHH
Confidence 88888888888888877643222 34456667777888888888888888876541 3345677788888888899998
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 047393 202 VLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246 (373)
Q Consensus 202 A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 246 (373)
|.+.++++....| ++..+..+...+...|+.++|..+.+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 8888888555433 56677777788888888888888877776543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=6.1e-10 Score=114.08 Aligned_cols=235 Identities=8% Similarity=-0.051 Sum_probs=187.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++..++.. +.+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 55333333344446899999999999998653 4555566677788889999999999999998765 33334444444
Q ss_pred HHhHhcCCHHHHHHHHccCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 89 NINSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
....+.|++++|...|++.. .|+...|..+...+.+.|++++|+..+++..+.. +-+...++.+-.++...|+.++|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45556699999999999887 4678889999999999999999999999998874 34566777888899999999999
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
...+++..+.. +-+...+..+..++...|++++|...|++++...|+. .+.-.......+..+++.|.+-+++...+
T Consensus 663 i~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 663 REMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999987642 3467888999999999999999999999988888865 45556666677778899999999998888
Q ss_pred CCCC
Q 047393 246 DPGM 249 (373)
Q Consensus 246 ~P~~ 249 (373)
+|+.
T Consensus 741 ~~~~ 744 (987)
T PRK09782 741 SFDS 744 (987)
T ss_pred Cccc
Confidence 8876
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=1.7e-09 Score=101.59 Aligned_cols=215 Identities=10% Similarity=-0.053 Sum_probs=147.5
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047393 21 CIKAKDYEMVHELLERIQLCCGFIDSYSIC--DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 98 (373)
..+.|+++.|.+.|.++.+ ..|+..... .....+...|+.+.|...++.+.+.. +-+..+...+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 3677778888887777765 345543322 23456667777778877777776665 445667777777777777777
Q ss_pred HHHHHHccCCCC---------------------------------------------ChhHHHHHHHHHHhCCChHHHHH
Q 047393 99 DADLAFKSTPEK---------------------------------------------NSLSWTFIISARVNHGHPSEALD 133 (373)
Q Consensus 99 ~A~~~~~~m~~~---------------------------------------------d~~~~~~li~~~~~~g~~~~A~~ 133 (373)
+|.+++..+.+. ++.....+..++...|+.++|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777666555421 33344455666777788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCC
Q 047393 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK 213 (373)
Q Consensus 134 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 213 (373)
++++..+. .||... .++.+....++.+++.+..+...+++ +-|.....++...+.+.|++++|.+.|++++...
T Consensus 285 ~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 285 IILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88777664 444421 12333445578888888888776552 3355567777788888888888888888877777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 214 LCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 214 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
|+..++..+...+.+.|+.++|.+.+++...
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888888888888888888888887755
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=3e-10 Score=101.49 Aligned_cols=228 Identities=17% Similarity=0.120 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHc--CCCchHHH-HHHHHHHHHcC-----------
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCL--NPILLNVG-TQAQAYMTKRG----------- 76 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~m~~~g----------- 76 (373)
+++=|.|+. ....|.+..+.-+|+.|.+.|+..+...-..|+..-+ ...++--| .+.|-.|.+.|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 455666666 5678999999999999999998888776666655332 22222111 22233332222
Q ss_pred --------CCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047393 77 --------LISHPAVGNCLININSRCGKIDDADLAFKSTPE----KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144 (373)
Q Consensus 77 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 144 (373)
.+.+..+|.++|.++||....+.|.+++++-.. -+..+||.+|.+-.- ....+++.+|.+..++
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 355678999999999999999999999987763 378899999876432 2226889999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHH----HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHhhCC--------
Q 047393 145 MNPTTFRSALKAYALMGLVGE----AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE-VLEFIKGIVP-------- 211 (373)
Q Consensus 145 p~~~t~~~ll~~~~~~g~~~~----a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~-------- 211 (373)
||..|||+++++.++.|+++. |.+++.+|+ +.|+.|...+|..+|..+++.++..+ |..++.+.+.
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999998765 567888894 45999999999999999999887754 4444444221
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 212 -GKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 212 -~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+.| |...|...+..|.+..+.+.|.++-.....
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 334 557888889999999999999998877765
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=8.2e-10 Score=95.16 Aligned_cols=195 Identities=12% Similarity=0.016 Sum_probs=162.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35678888999999999999999999988743 2346678888889999999999999999998765 456678888899
Q ss_pred HhHhcCCHHHHHHHHccCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047393 90 INSRCGKIDDADLAFKSTPE-----KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 164 (373)
.|...|++++|.+.|++... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999988753 134567778889999999999999999988763 335678888889999999999
Q ss_pred HHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 047393 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209 (373)
Q Consensus 165 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (373)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998654 2446677778888899999999999988773
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.33 E-value=1.5e-09 Score=115.24 Aligned_cols=224 Identities=10% Similarity=-0.033 Sum_probs=180.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININS 92 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 92 (373)
+..+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455667788899999999999999874 46 45667788889999999999999999998654 345555555666678
Q ss_pred hcCCHHHHHHHHccCCCC----Ch---------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047393 93 RCGKIDDADLAFKSTPEK----NS---------LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~----d~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 159 (373)
+.|+.++|...++.+... +. ..+..+...+...|+.++|.++++. .+++...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 899999999999988642 11 1123456678899999999998872 35566777888899999
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYA 238 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 238 (373)
.|+.++|...|+...+.. +.+...+..+...|...|+.++|.+.++.++...| ++..+..+..++...|++++|.++
T Consensus 616 ~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999997642 44678889999999999999999999999666666 456777788889999999999999
Q ss_pred HHHHhccCC
Q 047393 239 LDKLLELDP 247 (373)
Q Consensus 239 ~~~m~~~~P 247 (373)
++.+.+..|
T Consensus 694 ~~~al~~~~ 702 (1157)
T PRK11447 694 FNRLIPQAK 702 (1157)
T ss_pred HHHHhhhCc
Confidence 999988554
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=2.9e-09 Score=100.46 Aligned_cols=223 Identities=10% Similarity=-0.026 Sum_probs=136.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh-----
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ----- 91 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----- 91 (373)
...+...|+++.|++.++++.+.. | +......+...+.+.|++++|.+++..+.+.+..+.......-..++
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666542 3 33455555666666666666666666666655332221111111111
Q ss_pred --HhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCH
Q 047393 92 --SRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT---FRSALKAYALMGLV 163 (373)
Q Consensus 92 --~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~ 163 (373)
......+...+.++..++ .+...+..+...+...|+.++|.+++++..+.. ||... ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 111122333334444432 266677777888888888888888888887763 44332 11122222345777
Q ss_pred HHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH--hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047393 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK--GIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (373)
+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+ .+....|+...+..+...+.+.|+.++|.+++++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776653222221455677888888899999999988 4456778888888888888899999999888888
Q ss_pred Hhc
Q 047393 242 LLE 244 (373)
Q Consensus 242 m~~ 244 (373)
...
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 654
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.31 E-value=1.2e-09 Score=115.81 Aligned_cols=231 Identities=12% Similarity=-0.009 Sum_probs=139.1
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHH--------------------------------
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-SYSICDILNSC-------------------------------- 56 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~-------------------------------- 56 (373)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 4556666777777888888888888777763 233 22333333222
Q ss_pred ----------cCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHH
Q 047393 57 ----------LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARV 123 (373)
Q Consensus 57 ----------~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~ 123 (373)
...|++++|.+.+++.++.. +-+...+..+...|.+.|++++|...|++..+ | +...+..+...+.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 23344555555555544432 22334444445555555555555555554321 2 2333333333344
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNP---------TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~---------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 194 (373)
..|++++|...++.+......++. ..+......+...|+.++|..+++. .+++...+..+...+.
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHH
Confidence 455555555555443322111111 1122334456666777777776651 1456667778889999
Q ss_pred hcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 195 RAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.|+.++|.+.|++++...| ++..+..+...+...|+.++|.+.++.+.+..|++
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 99999999999999887777 57889999999999999999999999998888876
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.27 E-value=3.5e-09 Score=99.44 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=149.7
Q ss_pred HHHHHHHHHH--HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHH--HHH
Q 047393 13 PWNLLLKACI--KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN--CLI 88 (373)
Q Consensus 13 ~~n~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li 88 (373)
.+..+..|.. ..|++++|.+.+....+..-.| ...|.....+..+.|+.+.|...+.++.+. .|+...+- ...
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a 160 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence 3444445544 3699999998887765532112 223444455557899999999999999764 45554333 346
Q ss_pred HHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHH--------
Q 047393 89 NINSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP-------TTF-------- 150 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~-------- 150 (373)
..+...|+++.|...+++..+ | +......+...|.+.|++++|.+++..+.+.+..++. .+|
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999998874 3 6778889999999999999999999999876544222 122
Q ss_pred --------------------------HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047393 151 --------------------------RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204 (373)
Q Consensus 151 --------------------------~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 204 (373)
..+..++...|+.++|..++++..+. +|+... .++.+....++.+++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHH
Confidence 23344455566666666666655432 344321 12233334466666666
Q ss_pred HHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 205 FIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 205 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..++..+..| |+..+..+...|.+.|++++|.+.|+...+..|+.
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 6666444455 34556666666777777777777777777666644
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.24 E-value=4.1e-09 Score=107.10 Aligned_cols=219 Identities=7% Similarity=-0.101 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHhc-CCCCCHH-HHH----HHHHHHcCCCchHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcCCHHHH
Q 047393 28 EMVHELLERIQLC-CGFIDSY-SIC----DILNSCLNPILLNVGTQAQAYMTKRGLI-SHPAVGNCLININSRCGKIDDA 100 (373)
Q Consensus 28 ~~A~~l~~~m~~~-g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A 100 (373)
++|++.++.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.+-+ |+. .-..+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 7788889888864 2334322 111 1133455679999999999999887632 332 222256789999999999
Q ss_pred HHHHccCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHc
Q 047393 101 DLAFKSTPEKN-------SLSWTFIISARVNHGHPSEALDLFKDKQWRY-----------TSMNP---TTFRSALKAYAL 159 (373)
Q Consensus 101 ~~~~~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~~~~~ 159 (373)
+..|+++.+.+ ...+..+..++.+.|++++|.++++.+.+.. -.|+. ..+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999875422 2345667778899999999999999998752 12332 345667778889
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSSRVHGDMKLAKYA 238 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 238 (373)
.|++++|..+++++... .+-+...+..+...+...|++++|++.+++++...|+ ...+..+...+...|++++|..+
T Consensus 372 ~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999764 2557788899999999999999999999998888885 67777788889999999999999
Q ss_pred HHHHhccCCCC
Q 047393 239 LDKLLELDPGM 249 (373)
Q Consensus 239 ~~~m~~~~P~~ 249 (373)
++++++..|++
T Consensus 450 ~~~ll~~~Pd~ 460 (765)
T PRK10049 450 TDDVVAREPQD 460 (765)
T ss_pred HHHHHHhCCCC
Confidence 99999999988
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1e-08 Score=100.38 Aligned_cols=227 Identities=15% Similarity=0.009 Sum_probs=161.8
Q ss_pred CChhHHHHHHHHHHH-----cCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHc---------CCCchHHHHHHHHHHH
Q 047393 9 DVEIPWNLLLKACIK-----AKDYEMVHELLERIQLCCGFIDS-YSICDILNSCL---------NPILLNVGTQAQAYMT 73 (373)
Q Consensus 9 p~~~~~n~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~m~ 73 (373)
.+...|...+.+-.. .+.+++|.++|++..+ ..|+. ..|..+..++. ..+++++|...+++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455566666666432 1346789999998887 45654 34544443332 3345789999999988
Q ss_pred HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HH
Q 047393 74 KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP-TT 149 (373)
Q Consensus 74 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 149 (373)
+.. +-+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|...+++..+.. |+. ..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 765 45677888888888999999999999988653 4 46678888889999999999999999988764 432 23
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHH
Q 047393 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSR 227 (373)
Q Consensus 150 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~ 227 (373)
+..++..+...|++++|...+++..+.. +| +...+..+..++...|+.++|...+.++.+..|+. ..++.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 3344445666889999999998886541 35 44556777888889999999999999855555543 44555555667
Q ss_pred HcCCHHHHHHHHHHHhc
Q 047393 228 VHGDMKLAKYALDKLLE 244 (373)
Q Consensus 228 ~~g~~~~A~~~~~~m~~ 244 (373)
..| ++|...++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 487 QNS--ERALPTIREFLE 501 (553)
T ss_pred ccH--HHHHHHHHHHHH
Confidence 666 477777777665
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=5.8e-10 Score=104.75 Aligned_cols=223 Identities=15% Similarity=0.067 Sum_probs=157.3
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHcCCCchHHHHHHHH-HHHHcCCCCchhHHHHHHHHh
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQLCC-GF-IDSYSICDILNSCLNPILLNVGTQAQA-YMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~~g-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~-~m~~~g~~~~~~~~~~li~~~ 91 (373)
..+-.+|...+++++|.++|+...+.. .. -+...|++.+=.+-+ +-++..+. .+.+.. +-.+.+|-++.++|
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~-~~sPesWca~GNcf 431 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTD-PNSPESWCALGNCF 431 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhhC-CCCcHHHHHhcchh
Confidence 456778889999999999999998742 11 255677777654432 11222222 222222 44577888888888
Q ss_pred HhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHccCCHHH
Q 047393 92 SRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS---ALKAYALMGLVGE 165 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll~~~~~~g~~~~ 165 (373)
.-.++.+.|++.|++..+- .+.+|+.+..-+.....+|.|...|+..+ ..|...|++ +--.|.+.++++.
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhH
Confidence 8888888888888877643 56777777777778888888888887765 345554444 4456778888888
Q ss_pred HHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 166 AYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
|+-.|+...+ +.| +.+....+...+-+.|+.++|+++|+++...+| |+..---....+...++.++|...++++.
T Consensus 508 Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk 584 (638)
T KOG1126|consen 508 AEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELK 584 (638)
T ss_pred HHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 8888887753 445 556667777778888888888888888776665 55555555666777788888888888888
Q ss_pred ccCCCC
Q 047393 244 ELDPGM 249 (373)
Q Consensus 244 ~~~P~~ 249 (373)
++-|++
T Consensus 585 ~~vP~e 590 (638)
T KOG1126|consen 585 ELVPQE 590 (638)
T ss_pred HhCcch
Confidence 888887
No 36
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=4.1e-09 Score=99.51 Aligned_cols=232 Identities=13% Similarity=0.041 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhc-----C-CCCCHHH-HHHHHHHHcCCCchHHHHHHHHHHHHc-----C-CCC
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLC-----C-GFIDSYS-ICDILNSCLNPILLNVGTQAQAYMTKR-----G-LIS 79 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~~ 79 (373)
+...+...|...|+++.|..++++..+. | ..|...+ .+.+...|...+++.+|..+|+.+... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444899999999999999999988764 2 2355544 344677888999999999999998653 2 122
Q ss_pred c-hhHHHHHHHHhHhcCCHHHHHHHHccCC----------CCCh-hHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC
Q 047393 80 H-PAVGNCLININSRCGKIDDADLAFKSTP----------EKNS-LSWTFIISARVNHGHPSEALDLFKDKQWR---YTS 144 (373)
Q Consensus 80 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~ 144 (373)
. ..+++.|-.+|.+.|++++|...+++.. .+.+ .-++.++..++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2 3467778889999999999888776543 1233 34677888899999999999999876432 223
Q ss_pred CC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHHc----C-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC---
Q 047393 145 MN----PTTFRSALKAYALMGLVGEAYRLFLSMEEVY----H-IEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP--- 211 (373)
Q Consensus 145 p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 211 (373)
++ ..+++.+-..|-+.|++++|..+|++..... | ..+ ....++.|-..|.+.++..+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3589999999999999999999999887543 1 122 246778888999999999999999987543
Q ss_pred -C---CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 212 -G---KLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 212 -~---~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
. .|++ .+|..|...|.+.|+++.|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 3443 6899999999999999999999988874
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.7e-08 Score=86.16 Aligned_cols=225 Identities=9% Similarity=-0.033 Sum_probs=176.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCch------hHHHH
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP------AVGNC 86 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~ 86 (373)
|-.=++. .-+.+.++|.++|-+|.+. .| +..+-.+|-+.+.+.|..+.|..+++.+.++ ||. ..--.
T Consensus 39 Yv~GlNf-LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~q 112 (389)
T COG2956 39 YVKGLNF-LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQ 112 (389)
T ss_pred HHhHHHH-HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHH
Confidence 4333443 3357789999999999973 34 3345667888999999999999999998764 443 23345
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHc
Q 047393 87 LININSRCGKIDDADLAFKSTPEKN---SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP----TTFRSALKAYAL 159 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~ 159 (373)
|..=|...|-+|.|+.+|..+.+.+ ...-.-|+..|....+|++|+++-+++.+.+-.+.. ..|.-+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 6667899999999999999988632 456677899999999999999999999887655543 466777777778
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPS-EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~ 236 (373)
..+++.|..++....+. .|+ +..--.+-+.+...|+++.|.+.++.+.+..|+. .+...|..+|...|+.+++.
T Consensus 193 ~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999988665 443 3444456688889999999999999966666653 67889999999999999999
Q ss_pred HHHHHHhccCC
Q 047393 237 YALDKLLELDP 247 (373)
Q Consensus 237 ~~~~~m~~~~P 247 (373)
.++..+.+..|
T Consensus 270 ~fL~~~~~~~~ 280 (389)
T COG2956 270 NFLRRAMETNT 280 (389)
T ss_pred HHHHHHHHccC
Confidence 99999988543
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.20 E-value=2.8e-08 Score=101.08 Aligned_cols=126 Identities=11% Similarity=0.011 Sum_probs=65.0
Q ss_pred HhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC--CHhHHHHHHHHHHhcCCH
Q 047393 123 VNHGHPSEALDLFKDKQWRYTS-MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP--SEEHYSIMVEALGRAGMF 199 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~ 199 (373)
...|++++|+..|+++.+.+-. |+. .-..+..+|...|++++|..+|+++.+.....+ .......+..++.+.|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 3445666666666666555421 221 111134456666666666666666543211110 122344445556666666
Q ss_pred HHHHHHHHhhCCCCC-------------C---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 200 EEVLEFIKGIVPGKL-------------C---PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 200 ~~A~~~~~~~~~~~p-------------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
++|.++++++....| + ...+..+...+...|+.++|..+++++....|++
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 666666666433322 1 1233445555666666666666666666666655
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.18 E-value=6.6e-10 Score=107.18 Aligned_cols=244 Identities=13% Similarity=0.097 Sum_probs=159.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC
Q 047393 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN 111 (373)
Q Consensus 32 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d 111 (373)
.++..+...|+.|+.+||..+|.-||..|+++.|- +|..|.-...+.+..+++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888888999999999999999999988888 8888887777888888999988888888877665 677
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHH-HH-------HcCCCCCHHHH--------------HHHHHHHHccCCHHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKD-KQ-------WRYTSMNPTTF--------------RSALKAYALMGLVGEAYRL 169 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~--------------~~ll~~~~~~g~~~~a~~~ 169 (373)
+.||+.|..+|.++|+..- ++..++ |. ..|+.--..-+ .+++.-....|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988654 222222 22 12221111111 1222223344555555555
Q ss_pred HHHhHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 170 FLSMEEVYHIEPSEEHYSIMVEALGR-AGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 170 ~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
+..+.......|... ++.-... ...+++-..+... ..-.|++.+|..++++-...|+.+.|..++.+|.+..
T Consensus 162 l~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-- 234 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-- 234 (1088)
T ss_pred HhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC--
Confidence 544421111111111 1222222 2334444444444 3336999999999999999999999999999999843
Q ss_pred CccchhheecceEEEEecCCcchHHHHHHHHHHHHHHHHCCCccCCchhhhH
Q 047393 249 MYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTK 300 (373)
Q Consensus 249 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~ 300 (373)
+......|-.+..+ .+....++.+++.|.+.|+.|+..|+.--
T Consensus 235 ------fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 235 ------FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred ------CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 33333333222222 23346688999999999999999996543
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=8e-10 Score=103.84 Aligned_cols=215 Identities=10% Similarity=0.015 Sum_probs=168.8
Q ss_pred CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--CCCchhHHHHHHHHhHhcCCHH-HHHH
Q 047393 26 DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG--LISHPAVGNCLININSRCGKID-DADL 102 (373)
Q Consensus 26 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~-~A~~ 102 (373)
+..+|+..|.+.... +.-+......+..+|-..++.++|+++|+.+.+.. ..-+..+|.+.+--+-+.=.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999985553 33344677788899999999999999999996642 1235678887775443321111 1233
Q ss_pred HHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC
Q 047393 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181 (373)
Q Consensus 103 ~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p 181 (373)
+.+.. ...+.||.++.+.|.-.++.+.|++.|++..+. .| ...+|+.+-.=+.....+|.|...|+... ..
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 33322 346789999999999999999999999998875 45 67899888888889999999999998764 44
Q ss_pred CHhHHH---HHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 182 SEEHYS---IMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 182 ~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
|+..|| -+.-.|.|.++++.|+-.|++++++.| +.+....+...+-+.|+.++|.++++++..++|.+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 555565 456789999999999999999888888 56777778888999999999999999999999988
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.15 E-value=7.5e-08 Score=85.77 Aligned_cols=227 Identities=11% Similarity=-0.019 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
+..|-.-..+--+.|+.+.|-.++.+.-+..-.++...+.+........|+.+.|..-..++.+.+ +.++.+......+
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~ 196 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRA 196 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 444555555666677777777777777664334455556666666677777777777777776665 4556677777777
Q ss_pred hHhcCCHHHHHHHHccCCCC---------------------------------------------ChhHHHHHHHHHHhC
Q 047393 91 NSRCGKIDDADLAFKSTPEK---------------------------------------------NSLSWTFIISARVNH 125 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~---------------------------------------------d~~~~~~li~~~~~~ 125 (373)
|.+.|++.+...++..+.+. ++..-.+++.-+.+.
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 77777777777777655421 223334556667788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047393 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEF 205 (373)
Q Consensus 126 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 205 (373)
|+.++|.++.++..+.+..|... .+-.+.+.++.+.-.+..+...+.++-.| ..+.+|-..|.+.+.+.+|.+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888888887776622 23345567777777777777766655444 6788899999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 206 IKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 206 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
|+.+++..|+..+|+.+.+++.+.|+.++|.++.++...
T Consensus 351 leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 351 LEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999899999999999999999999999999999998764
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=4.8e-08 Score=87.93 Aligned_cols=217 Identities=15% Similarity=-0.090 Sum_probs=156.2
Q ss_pred CCHhHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047393 25 KDYEMVHELLERIQLCC-GFID--SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
+..+.++.-+.++.... ..|+ ...|..+...+.+.|+.++|...|++.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44577888888887543 3333 2457777778899999999999999998865 456889999999999999999999
Q ss_pred HHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcC
Q 047393 102 LAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178 (373)
Q Consensus 102 ~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g 178 (373)
+.|++..+ | +..+|..+...+...|++++|.+.|++..+. .|+..........+...++.++|...+++....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 99998753 4 5678888899999999999999999998876 454332222222344578899999999776443
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHH--HHHHHhhCCC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 179 IEPSEEHYSIMVEALGRAGMFEEV--LEFIKGIVPG----KL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 179 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~~~~~----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..|+...+ .+.. ...|+..++ .+.+.+..+. .| ....|..+...+.+.|+.++|...|++..+.+|.+
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 24443222 2332 334554433 3333321221 12 23689999999999999999999999999988744
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.12 E-value=5.1e-08 Score=92.02 Aligned_cols=225 Identities=11% Similarity=-0.047 Sum_probs=111.1
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFIDSY--SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 96 (373)
....+.|+++.|.+.+.+..+. .|+.. .-......+...|+.+.|...++.+.+.. +-+..+...+...|.+.|+
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 3344455555555555555432 13321 22223444455555555555555555543 3344455555555555566
Q ss_pred HHHHHHHHccCCCC---ChhHHHH----HHHHHHhCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccCCHHHH
Q 047393 97 IDDADLAFKSTPEK---NSLSWTF----IISARVNHGHPSEALDLFKDKQWRYT---SMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 97 ~~~A~~~~~~m~~~---d~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
+++|.+.+..+.+. +...+.. ...+....+..+++.+.+..+.+... +.+...+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 65555555554421 2221210 00111111222222223333332211 12555566666667777777777
Q ss_pred HHHHHHhHHHcCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHH
Q 047393 167 YRLFLSMEEVYHIEPSEEH---YSIMVEALGRAGMFEEVLEFIKGIVPGKLC-P--LIWRTLLLSSRVHGDMKLAKYALD 240 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~ 240 (373)
.+++++..+. .||... .....-.....++.+.+.+.+++..+..|+ + ....++...+.+.|++++|.+.|+
T Consensus 283 ~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 283 QEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7777777554 333321 111112222346666777777665555553 3 455566777777777777777777
Q ss_pred --HHhccCCCC
Q 047393 241 --KLLELDPGM 249 (373)
Q Consensus 241 --~m~~~~P~~ 249 (373)
...+..|+.
T Consensus 360 ~a~a~~~~p~~ 370 (409)
T TIGR00540 360 NVAACKEQLDA 370 (409)
T ss_pred HhHHhhcCCCH
Confidence 354555543
No 44
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=8.8e-09 Score=91.76 Aligned_cols=228 Identities=13% Similarity=0.071 Sum_probs=159.9
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC-CchhHHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI-SHPAVGNCLIN 89 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~ 89 (373)
.....-+.+++...|+++.++ .+..... .|.......+...+....+-+.+..-++........ .+..+.-....
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344566778888899877654 3444433 677766666666555545555555544444333323 23333333445
Q ss_pred HhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 047393 90 INSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL----MGLVGE 165 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~ 165 (373)
.|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHH
Confidence 678899999999998876 45667777889999999999999999999875 334 444445444433 347999
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDM-KLAKYALDKLL 243 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 243 (373)
|..+|+++.. .+.+++.+.|.+..+....|++++|.+++.+++...| ++.+...++......|+. +.+.+.+.++.
T Consensus 186 A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999954 4578899999999999999999999999999888666 567777888888888877 77889999999
Q ss_pred ccCCCC
Q 047393 244 ELDPGM 249 (373)
Q Consensus 244 ~~~P~~ 249 (373)
...|++
T Consensus 264 ~~~p~h 269 (290)
T PF04733_consen 264 QSNPNH 269 (290)
T ss_dssp HHTTTS
T ss_pred HhCCCC
Confidence 888877
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=2.7e-08 Score=97.47 Aligned_cols=209 Identities=11% Similarity=-0.047 Sum_probs=152.8
Q ss_pred CCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047393 25 KDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 103 (373)
+++++|.+.+++..+. .| +...+..+...+...|++++|...+++.++.+ +.+...+..+...|...|++++|...
T Consensus 318 ~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 318 NAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4588999999999874 45 55677778788889999999999999998876 45577888899999999999999999
Q ss_pred HccCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC
Q 047393 104 FKSTPE--KN-SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179 (373)
Q Consensus 104 ~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~ 179 (373)
+++..+ |+ ...+..++..+...|++++|...+++..+.. .| +...+..+..++...|+.++|...++++...
T Consensus 395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--- 470 (553)
T PRK12370 395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--- 470 (553)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---
Confidence 998764 43 2333444555677899999999999987664 34 4455677778888999999999999987543
Q ss_pred CCC-HhHHHHHHHHHHhcCCHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 180 EPS-EEHYSIMVEALGRAGMFEEVLEFIKGIVP---GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 180 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
.|+ ....+.+...|+..| ++|...++.+.+ ..|....+..+ .+.-.|+.+.+... +++.+-
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhcc
Confidence 444 444556666777777 477776666333 33433344333 44456776666655 777663
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.2e-07 Score=86.04 Aligned_cols=221 Identities=11% Similarity=-0.003 Sum_probs=146.1
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHhHhcCCH
Q 047393 20 ACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGL--ISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 20 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~ 97 (373)
++-...+.+++++=.......|+.-+...-+....+.-...++++|..+|+++.+... --|..+|..++ |.+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 3334445566666666666666544444444444444566677777777777766521 01455665554 3333221
Q ss_pred H---HHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 98 D---DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 98 ~---~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
. -|..++ .+.+--+.|...+.+-|.-.++.++|...|++..+.+ +-....|+.+-+-|....+...|.+-|+...
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1 122221 1222235566667777777788888888888887764 3345677777778888888888888888876
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 047393 175 EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246 (373)
Q Consensus 175 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 246 (373)
+. .+-|-..|-.|..+|.-.+...=|+-+|+++...+| |...|.+|.++|.+.++.++|++.|.......
T Consensus 392 di--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 392 DI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred hc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 43 244778888888888888888888888888777777 67888888888888888888888888887643
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=4.1e-08 Score=88.63 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=136.2
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 047393 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFK 136 (373)
Q Consensus 60 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 136 (373)
|+++.|.+.|.+.+...-......||+ .-.+-..|++++|++.|-++. ..++.+.--+.+.|-...++..|++++-
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 566677777766665443333333332 223556677777777775543 3455555566677777777778877775
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 137 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
+.... ++.|.....-+...|-+.|+-..|.+.+-.--+ -++-+..+...|...|....-+++|..+|+++--+.|+.
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 54332 455677888888999999999999888765522 235578888889999999999999999999955589999
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCC
Q 047393 217 LIWRTLLLSS-RVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 217 ~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+-|..|+..| .+.|++.+|.++|+.+.+.-|.+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 9999999876 56999999999999999988877
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.2e-07 Score=82.18 Aligned_cols=230 Identities=12% Similarity=0.016 Sum_probs=176.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
--+|-+-|-+.|..++|+++-+.+.++ ||. ...-.|..-|...|-++.|+.+|..+.+.| ..-...-.-|
T Consensus 72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqL 147 (389)
T COG2956 72 HLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQL 147 (389)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHH
Confidence 346777888999999999999888864 442 234456677888999999999999998765 3445677789
Q ss_pred HHHhHhcCCHHHHHHHHccCCCCCh--------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047393 88 ININSRCGKIDDADLAFKSTPEKNS--------LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~d~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 159 (373)
+..|-...+|++|+++-+++.+-+. ..|.-|...+....+.+.|..++.+..+.+ +-.+..-..+-+....
T Consensus 148 l~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 148 LNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELA 226 (389)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHh
Confidence 9999999999999999887765433 345555566666788999999999988764 2233344455567888
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 239 (373)
.|+++.|.+.|+.+.++ +..--..+...|..+|...|+.++...++.++|...+++..-..+-.--....-.+.|...+
T Consensus 227 ~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 227 KGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred ccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHH
Confidence 99999999999999776 33334567788999999999999999999998887777777777766666666667777777
Q ss_pred HHHhccCCCC
Q 047393 240 DKLLELDPGM 249 (373)
Q Consensus 240 ~~m~~~~P~~ 249 (373)
.+-+...|+.
T Consensus 306 ~~Ql~r~Pt~ 315 (389)
T COG2956 306 TRQLRRKPTM 315 (389)
T ss_pred HHHHhhCCcH
Confidence 7766666643
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.7e-08 Score=86.27 Aligned_cols=230 Identities=11% Similarity=-0.005 Sum_probs=188.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 94 (373)
+.+-.+|.+.|.+.+|...|+.-... .|-+.||..|-++|.+..++..|+.++.+-++. ++-|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66788999999999999999887764 567778888999999999999999999887664 234444445667778888
Q ss_pred CCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 95 GKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 95 g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
++.++|.++++...+. ++.+-.++..+|.-.++++-|+..++++.+.|+. +...|+.+--+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999987643 5666667778888899999999999999999964 67778888778888999999999998
Q ss_pred HhHHHcCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 172 SMEEVYHIEPSE--EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 172 ~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
+.... --.|+. .+|-.+-......|++..|.+-|+-++...|+ ...+|.|.-.-.+.|++++|..++....++.|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88543 334543 56777777777889999999999987765664 478898888888999999999999999998887
Q ss_pred C
Q 047393 249 M 249 (373)
Q Consensus 249 ~ 249 (373)
.
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 6
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.01 E-value=4.3e-07 Score=91.67 Aligned_cols=91 Identities=12% Similarity=-0.020 Sum_probs=67.1
Q ss_pred HHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-------CCHHHHHHHHHHHHH
Q 047393 156 AYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK-------LCPLIWRTLLLSSRV 228 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~li~~~~~ 228 (373)
++...|+..++.+.|+.+... +.+.-..+-..+.++|...+++++|..++..+.... ++......|..++..
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 355667777788888887443 544344466788899999999999999999854422 133345778889999
Q ss_pred cCCHHHHHHHHHHHhccCC
Q 047393 229 HGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~P 247 (373)
.+++++|..+++.+.+..|
T Consensus 380 ~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred cccHHHHHHHHHHHHhcCC
Confidence 9999999999999988555
No 51
>PF12854 PPR_1: PPR repeat
Probab=98.97 E-value=7.5e-10 Score=64.29 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=28.1
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 75 RGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 75 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.94 E-value=5.7e-07 Score=90.79 Aligned_cols=221 Identities=7% Similarity=-0.077 Sum_probs=173.6
Q ss_pred HhHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH
Q 047393 27 YEMVHELLERIQLC-CGFIDS-YSI----CDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100 (373)
Q Consensus 27 ~~~A~~l~~~m~~~-g~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 100 (373)
.+.|+.-++.+... +-.|.. ..| .-.+-++...++..++.+.|+.+...|.+....+-.++.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 34566666665542 222432 222 234557788899999999999999988765667888999999999999999
Q ss_pred HHHHccCCCC---------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHH
Q 047393 101 DLAFKSTPEK---------NSLSWTFIISARVNHGHPSEALDLFKDKQWRYT-----------SMN--P-TTFRSALKAY 157 (373)
Q Consensus 101 ~~~~~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~--~-~t~~~ll~~~ 157 (373)
+.+|+++..+ +......|.-+|...+++++|..+++++.+.-. .|| - ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 9999987532 233457889999999999999999999987311 122 2 2344567778
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 236 (373)
...|++.+|++.++.+... -+-|......+.+.+...|++.+|++.++.+....| +..+......++...|++.+|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 8999999999999999654 244889999999999999999999999988555777 4567778888899999999999
Q ss_pred HHHHHHhccCCCC
Q 047393 237 YALDKLLELDPGM 249 (373)
Q Consensus 237 ~~~~~m~~~~P~~ 249 (373)
.+.+.+.+..|++
T Consensus 505 ~~~~~l~~~~Pe~ 517 (822)
T PRK14574 505 LLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHhhCCCc
Confidence 9999999988876
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.93 E-value=1.1e-08 Score=99.09 Aligned_cols=183 Identities=12% Similarity=0.065 Sum_probs=109.5
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHHcCCCchH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG------------------------FIDSYSICDILNSCLNPILLN 63 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~------------------------~p~~~~~~~ll~~~~~~~~~~ 63 (373)
.||.+||.++|..||..|+.+.|- +|.-|.-..+ .|.+.||..|..+|.+.||+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccchH
Confidence 699999999999999999999988 7776654322 345667777777777777654
Q ss_pred H---HHHHHHHHH----HcCC-----------------CCchhHHHHHHHHhHhcCCHHHHHHHHccCC-----------
Q 047393 64 V---GTQAQAYMT----KRGL-----------------ISHPAVGNCLININSRCGKIDDADLAFKSTP----------- 108 (373)
Q Consensus 64 ~---a~~~~~~m~----~~g~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------- 108 (373)
. +.+.+.... ..|+ -||.. .++....-.|.++.+++++..++
T Consensus 101 ~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 101 LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 3 222222211 1121 12211 12222222333444444432222
Q ss_pred -----------------------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 109 -----------------------EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 109 -----------------------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
.++..+|.+++..-...|+.+.|..++.+|.+.|++-+..-|-.++-+ .++...
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 135566666666666677777777777777777777666666666655 666666
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM 198 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 198 (373)
++.+++.|.. .|+.|+..|+...+..+.++|.
T Consensus 255 ~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 255 FEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 6667766644 3777777777666655555444
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.1e-07 Score=82.57 Aligned_cols=216 Identities=15% Similarity=0.102 Sum_probs=173.4
Q ss_pred HHHcCCHhHHHHHHHHHHhcC-CC-CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047393 21 CIKAKDYEMVHELLERIQLCC-GF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 98 (373)
.-...++++|+.+|+++.++. .+ -|..+|+.++-.--.... ...+.+-.-.=-+-.+.|+-++.+-|+-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 346789999999999999863 12 256788888754332222 222222211111234567888888899999999
Q ss_pred HHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 99 DADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 99 ~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
+|...|++..+ .....|+.+..-|....+...|++-+++..+-. +.|-..|-.+-++|.-.+++.-|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~- 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL- 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH-
Confidence 99999998764 356889999999999999999999999998874 6688999999999999999999999999884
Q ss_pred HcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 176 VYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP-GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 176 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.++| |...|.+|.+.|.+.+++++|.+-|.+++. -+.+...+..|.+.+-+.++.++|.+.|++-++
T Consensus 426 --~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 426 --ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred --hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3466 889999999999999999999999999776 233458999999999999999999999998776
No 55
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=5.3e-09 Score=60.69 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=19.3
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 178 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
|+.||..|||+||++||+.|++++|.++|++
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 5566666666666666666666666666665
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=1.3e-06 Score=78.58 Aligned_cols=203 Identities=8% Similarity=-0.096 Sum_probs=144.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
...|..+-..|...|++++|...|++..+. .| +...|+.+...+...|++++|...|+..++.. +-+..+|..+..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 355777788889999999999999999874 45 56789999999999999999999999998754 334678888889
Q ss_pred HhHhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 167 (373)
++...|++++|.+.|+...+ |+..............+++++|.+.|.+..... .|+...+ .+.. ...|+...+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~- 215 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE- 215 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-
Confidence 99999999999999988763 332212222223456788999999997765432 3332222 2222 234555444
Q ss_pred HHHHHhHHHcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHH
Q 047393 168 RLFLSMEEVYHIEP-----SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRT 221 (373)
Q Consensus 168 ~~~~~m~~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 221 (373)
+.++.+.+.....| ....|..+...+.+.|+.++|...|++++...| |.+-+..
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35555533211112 235788899999999999999999999887665 5544444
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.82 E-value=8.9e-07 Score=84.73 Aligned_cols=227 Identities=15% Similarity=0.066 Sum_probs=139.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc---
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC--- 94 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 94 (373)
..+...|++++|++.++.-.. .-+|.. ........+.+.|+.++|..++..+++.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 446789999999999977544 345654 46667778899999999999999999988 45666667777766332
Q ss_pred --CCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047393 95 --GKIDDADLAFKSTPE--KNSLSWTFIISARVNHGHPS-EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169 (373)
Q Consensus 95 --g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 169 (373)
.+.+...++++++.+ |...+..-+.-.+.....+. .+...+..+..+|+++ +|+.+-..|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 256777788877653 22222211211122111222 3344555566666543 444444445544444444455
Q ss_pred HHHhHHHc---C----------CCCCHhHH--HHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 047393 170 FLSMEEVY---H----------IEPSEEHY--SIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSSRVHGDMK 233 (373)
Q Consensus 170 ~~~m~~~~---g----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 233 (373)
+....... + -+|+...| .-+...|-..|+.++|++++++++...|+ +..|..-.+.+...|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 44443221 0 12333233 44455666777777777777777776675 457777777777777777
Q ss_pred HHHHHHHHHhccCCCC-cc
Q 047393 234 LAKYALDKLLELDPGM-YV 251 (373)
Q Consensus 234 ~A~~~~~~m~~~~P~~-y~ 251 (373)
+|.+.++...++++.+ |+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyi 264 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYI 264 (517)
T ss_pred HHHHHHHHHHhCChhhHHH
Confidence 7777777777777666 54
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.79 E-value=4.1e-06 Score=74.91 Aligned_cols=231 Identities=14% Similarity=0.011 Sum_probs=181.8
Q ss_pred HHHHHHHH--cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047393 16 LLLKACIK--AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSR 93 (373)
Q Consensus 16 ~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 93 (373)
.+..+..+ .|+|.+|+++..+-.+.+-.| ...|..-..+--+.|+.+.+-.++.+.-+..-.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34455543 699999999999877765433 334666777888999999999999999876446777888888888999
Q ss_pred cCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCH
Q 047393 94 CGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP-------TTFRSALKAYALMGLV 163 (373)
Q Consensus 94 ~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~ 163 (373)
.|+.+.|..-.++.. ..+...-.....+|.+.|++.+...++.+|.+.|.--|+ .+|+.+++-....+..
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999988777554 458889999999999999999999999999999876554 4888888887777777
Q ss_pred HHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC-------------------------------C
Q 047393 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP-------------------------------G 212 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------------------~ 212 (373)
+.-...|+....+ .+-++..-.+++.-+.++|+.++|.++..+.++ .
T Consensus 246 ~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 246 EGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred hHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 7777777777543 355666677788888888888888887766532 1
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 213 KL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 213 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.| ++..+.+|...|.+.+.+.+|...|+...+..|+.
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 12 45778888899999999999999999888877654
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.2e-06 Score=80.11 Aligned_cols=216 Identities=10% Similarity=0.016 Sum_probs=165.4
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047393 21 CIKAKDYEMVHELLERIQLCCGFIDSYS-ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDD 99 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 99 (373)
+.-.|+...|.+-|+..+... |.... |--+...|....+.++..+.|+...+.. +-|..+|..-..++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344688889999999888743 33222 6777778899999999999999987765 4566677766677777789999
Q ss_pred HHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHH
Q 047393 100 ADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 100 A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 176 (373)
|..=|++...- ++..|--+-.+.-+.+++++++..|++.+++ ++--...|+.....+...++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999877643 5566666666777888999999999998876 455577888889999999999999999998753
Q ss_pred cCCCCC-------H--hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 177 YHIEPS-------E--EHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 177 ~g~~p~-------~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+.|+ . .+--+++..- -.+++..|.+++++++++.| ....|.+|...-.+.|+.++|.++|++...
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2443 1 1112222222 34899999999999888887 457899999999999999999999998765
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=7.5e-06 Score=68.15 Aligned_cols=198 Identities=13% Similarity=0.018 Sum_probs=156.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHh
Q 047393 48 SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVN 124 (373)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~ 124 (373)
+...|.-.|.+.|+...|..-++..+++. +.+..+|..+...|.+.|+.+.|.+-|+... ..+..+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 45567778889999999999999998876 4557788999999999999999999998654 3356677777777899
Q ss_pred CCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHH
Q 047393 125 HGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 125 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 202 (373)
.|++++|...|++....-.-| -..||..+--+..+.|+.+.|...|++..+. .| ...+.-.+.....+.|+...|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999987753322 3467877777778899999999999988654 44 446667788888899999999
Q ss_pred HHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 203 LEFIKGIVP-GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 203 ~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..++++.-. ..++..+.-..|+.-.+.|+.+.+.+.=.++.+.-|..
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999988332 44677777777888888999998888877777766654
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.75 E-value=2.5e-06 Score=80.98 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=151.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHc-----CC-CCchh-HHHHHHHHhHhcCCHHHHHHHHccCCC-------C--
Q 047393 47 YSICDILNSCLNPILLNVGTQAQAYMTKR-----GL-ISHPA-VGNCLININSRCGKIDDADLAFKSTPE-------K-- 110 (373)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-------~-- 110 (373)
.+...+...|...|+++.|..++++.++. |. .|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666889999999999999999988665 21 23433 334577789999999999999987652 1
Q ss_pred --ChhHHHHHHHHHHhCCChHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHHcC--C
Q 047393 111 --NSLSWTFIISARVNHGHPSEALDLFKDKQW---R--YT-SMNP-TTFRSALKAYALMGLVGEAYRLFLSMEEVYH--I 179 (373)
Q Consensus 111 --d~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~--g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g--~ 179 (373)
-..+++.|..+|.+.|++++|...+++..+ . |. .|.. ..++.+...|+..+++++|..+++...+.+- .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 356788888899999999999888877543 1 22 2233 2456777788999999999999998765443 2
Q ss_pred CCC----HhHHHHHHHHHHhcCCHHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 180 EPS----EEHYSIMVEALGRAGMFEEVLEFIKGIVP--------GKLC-PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 180 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.++ ..+++.|-..|...|++++|++++++++. ..+. -..++.|..+|.+.++.++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 222 36899999999999999999999998764 1222 35778889999999999999999998765
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.1e-05 Score=75.28 Aligned_cols=238 Identities=11% Similarity=-0.017 Sum_probs=156.2
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
|+..--.-..-+...+++.+..++++...+. .++....+..=|.++...|+-.+-..+=..|++.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 3444444555667788999999999988764 34455555566667777777666666666666543 556788988888
Q ss_pred HhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-------------------------
Q 047393 90 INSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWR------------------------- 141 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------------------- 141 (373)
-|.-.|+.++|.+.|.+-.. | =...|-.+..+|+-.|..++|+..+...-+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 88888999999999976543 2 2345666666666666666665555443221
Q ss_pred -------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcC-CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 142 -------YTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH-IEP----SEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 142 -------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
++-| |+...+-+--..-+.+.+.+|..+|+.....-. +.+ -..+++.|..+|.+.++.++|...+++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 1222 333344333333345667777777766542100 011 223567777888888888888888888
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 209 IVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 209 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
++...| +..++.++.-.|...|+++.|.+.|.+.+.+.|++
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 776555 67788888888888888888888888888888776
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=6.2e-07 Score=78.03 Aligned_cols=199 Identities=15% Similarity=0.075 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CChhHH-HHHHHHH
Q 047393 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--KNSLSW-TFIISAR 122 (373)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~-~~li~~~ 122 (373)
-.--+.+-++|.+.|.+.+|.+.++.-++. .|-+.||-.|-.+|-+..+.+.|+.+|.+..+ |-.+|| ..+...+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 334467888999999999999999988776 46778888899999999999999999998874 544555 4466778
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 202 (373)
-..++.++|.++++...+.. +-+......+...|.-.++++.|..+|+++.+- |+ -++..|+.+.-+|.-.+++|-+
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhh
Confidence 88899999999999988763 445666777777888899999999999999665 65 4667888888888889999999
Q ss_pred HHHHHhhCC--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 203 LEFIKGIVP--GKLC--PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 203 ~~~~~~~~~--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.-|++++. ..|+ ...|..+-......|++..|.+.|+....-+|++
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 999998765 3354 3689999999999999999999999998877766
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.66 E-value=1.2e-05 Score=66.87 Aligned_cols=203 Identities=10% Similarity=-0.052 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
.+.--+--+|.+.|++..|..-+++..+. .|+ ..++..+...|.+.|+.+.|.+-|+...+.. +-+..+.|.....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 34566778899999999999999999984 564 4578999999999999999999999998765 4567888999999
Q ss_pred hHhcCCHHHHHHHHccCC-CC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 91 NSRCGKIDDADLAFKSTP-EK----NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~-~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
+|..|++++|...|++.. .| -..||..+.-+..+.|+.+.|.+.|++-.+.. +-...+...+.+...+.|+...
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 999999999999998765 45 35688888888889999999999999988763 3345677888888899999999
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (373)
|..+++..... ..++..+.-..|..--+.|+-+.|.++=...-+..|...-|.
T Consensus 192 Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 192 ARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999998654 348888877788888888998888776555222455544443
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.63 E-value=2.1e-05 Score=74.64 Aligned_cols=231 Identities=12% Similarity=0.034 Sum_probs=144.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+...|-+-+.--..+.++++|..+|.+... ..|+...|.--++.---.+..++|.+++++.++.- +.-...|-.+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhH
Confidence 334455555555555666666666655554 23444444444444444455666666666555431 222334555555
Q ss_pred HhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
.+-+.++++.|.+.|..-.+ | .+-.|-.|...=-+.|.+..|..++++..-.+ +-|...|...|+.-.+.|+.+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 56666666666666655443 3 34456666666667778888888888877665 45778888888888888888888
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 246 (373)
..+..+..++ ++.+...|.--|.+..+.++-.++..-+.+ .+.|++..-.+...+....++++|.+.|.+...++
T Consensus 773 ~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkk---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 773 ELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKK---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHh---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888877664 455666676666666666665555444444 23456666666677777777888888888887777
Q ss_pred CCC
Q 047393 247 PGM 249 (373)
Q Consensus 247 P~~ 249 (373)
|+.
T Consensus 848 ~d~ 850 (913)
T KOG0495|consen 848 PDN 850 (913)
T ss_pred Ccc
Confidence 766
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.7e-05 Score=70.10 Aligned_cols=233 Identities=12% Similarity=-0.017 Sum_probs=155.7
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHcCCCchHHHHHHHHHHHHcC-------
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY----SICDILNSCLNPILLNVGTQAQAYMTKRG------- 76 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g------- 76 (373)
+-|+.....+...+...|+.++|...|++.+. +.|+.. .|..| +.+.|+.++...+...+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 34677788888999999999999999988765 344432 23333 344555555444444432111
Q ss_pred -----------------------CCCchhHHHHH---HHHhHhcCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCC
Q 047393 77 -----------------------LISHPAVGNCL---ININSRCGKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGH 127 (373)
Q Consensus 77 -----------------------~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~ 127 (373)
+..|.....++ ...+...|+.++|.-.|+... .| +..+|..|+.+|...|+
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence 11222222222 234556677778777777544 33 77888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHhHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHH
Q 047393 128 PSEALDLFKDKQWRYTSMNPTTFRSAL-KAYA-LMGLVGEAYRLFLSMEEVYHIEPS-EEHYSIMVEALGRAGMFEEVLE 204 (373)
Q Consensus 128 ~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 204 (373)
..+|.-+-+...+. ++.+..+.+.+- ..|. ..-.-++|.++++.-. .+.|+ ....+.+.+.+...|+.+++..
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 88887766554433 233444444331 2222 2233467777777654 34564 4566777788888999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 205 FIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 205 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
++++.+...||....+.|.+.+...+.+++|.+.|....+++|++
T Consensus 460 LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 999988888999999999999999999999999999999988754
No 67
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.62 E-value=4.4e-06 Score=82.26 Aligned_cols=235 Identities=14% Similarity=0.040 Sum_probs=159.4
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc---CCCCCHH-------HHHHHHHHHcCCCchHHHHHHHHHHHHcCCC
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLC---CGFIDSY-------SICDILNSCLNPILLNVGTQAQAYMTKRGLI 78 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 78 (373)
+-....|.+..-+...|++++|...|...... ...+|.. -|| +....-..++.+.|.+.|..+.+..
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh-- 526 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH-- 526 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC--
Confidence 66677888888888899999999999887764 1223331 233 3334445567777777777766542
Q ss_pred Cch-hHHHHHHHHhHhcCCHHHHHHHHccCC---------------------------------------CCChhHHHHH
Q 047393 79 SHP-AVGNCLININSRCGKIDDADLAFKSTP---------------------------------------EKNSLSWTFI 118 (373)
Q Consensus 79 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~---------------------------------------~~d~~~~~~l 118 (373)
|+. ..|--+..+--..+.+.+|...++... .+|+.+--+|
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 322 222222212222234444444443221 1233333333
Q ss_pred HHHHHh------------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHH
Q 047393 119 ISARVN------------HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186 (373)
Q Consensus 119 i~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 186 (373)
.+.|.+ .+..++|+++|.+.++.. +-|...-|.+--.++..|++.+|..+|.+.++.. .-+..+|
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~ 683 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVW 683 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCcee
Confidence 333322 234678888888877664 4466777777778889999999999999997652 3355678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVP---GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
-.+...|..+|++..|.++|+..++ -..++...+.|.+++.+.|++.+|.+.+.......|.+
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 8899999999999999999998776 23478899999999999999999999999999998888
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.62 E-value=5.7e-05 Score=72.53 Aligned_cols=221 Identities=14% Similarity=0.064 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHc-C-----CCchHHHHHHHHHHH-------------
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCL-N-----PILLNVGTQAQAYMT------------- 73 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~-~-----~~~~~~a~~~~~~m~------------- 73 (373)
........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. - ..+.+...++++++.
T Consensus 40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~ 117 (517)
T PF12569_consen 40 VLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP 117 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhh
Confidence 34555677889999999999999999865 66666544444333 1 123555556666543
Q ss_pred ---------------------HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC------------------CCChh-
Q 047393 74 ---------------------KRGLISHPAVGNCLININSRCGKIDDADLAFKSTP------------------EKNSL- 113 (373)
Q Consensus 74 ---------------------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------~~d~~- 113 (373)
+.|+| .+|+.|-..|....+.+-..+++.... .|...
T Consensus 118 L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l 194 (517)
T PF12569_consen 118 LDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL 194 (517)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence 33432 245555555554444444444443321 12232
Q ss_pred -HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHH
Q 047393 114 -SWTFIISARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMV 190 (373)
Q Consensus 114 -~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li 190 (373)
++.-+...|-..|++++|++.+++.++. .|+ ...|..-.+.+-+.|++++|...++..++ +.+ |...-+-..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~a 269 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHH
Confidence 3455677788999999999999998886 566 56788888999999999999999999843 344 666666778
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCC---C--CH----HHH--HHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGK---L--CP----LIW--RTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~---p--~~----~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
..+.|+|++++|.+++.. +... | |. ..| .-...+|.+.|++..|.+.|..+.+
T Consensus 270 Ky~LRa~~~e~A~~~~~~-Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASL-FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHCCCHHHHHHHHHh-hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 889999999999999988 5411 2 11 233 3345688999999999998887775
No 69
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=3.8e-05 Score=65.35 Aligned_cols=175 Identities=14% Similarity=0.068 Sum_probs=127.7
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 047393 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147 (373)
Q Consensus 68 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 147 (373)
+.+.+.......+......-...|++.|++++|++.......-+....+. ..+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 34444433333443334444556899999999999998854444444443 3456777899999999999875 367
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHH
Q 047393 148 TTFRSALKAYAL----MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTL 222 (373)
Q Consensus 148 ~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l 222 (373)
.|.+-|..++.+ .+.+..|.-+|++|.+ ..+|+..+-+-...++...|++++|..+++.++...+ ++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 788877777664 4578999999999954 4689999999999999999999999999999877444 66666666
Q ss_pred HHHHHHcC-CHHHHHHHHHHHhccCCCC
Q 047393 223 LLSSRVHG-DMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 223 i~~~~~~g-~~~~A~~~~~~m~~~~P~~ 249 (373)
+-.-...| +.+--.+...++....|..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 65555555 5555667888888888776
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=4.4e-06 Score=72.64 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 188 IMVEALGRAGMFEEVLEFIKGIVPGKLC----PLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
.+...|.+.|+.++|...+++++...|+ ...+..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556788899999999999997765443 47889999999999999999999988876555
No 71
>PLN02789 farnesyltranstransferase
Probab=98.60 E-value=4.9e-05 Score=68.81 Aligned_cols=229 Identities=10% Similarity=-0.054 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
+++.+-..+...++.++|+.+.+++++ +.|+.. +|+.--.++...+ .+++++..++.+.+.. +.+..+|+.---.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 455666667778899999999999987 456554 4665555566666 6899999999998775 4556677765555
Q ss_pred hHhcCC--HHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CC
Q 047393 91 NSRCGK--IDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM---GL 162 (373)
Q Consensus 91 ~~~~g~--~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---g~ 162 (373)
+.+.|+ .+++..+++++.+ .|..+|+-..-.+.+.|+++++++.++++++.+. -|...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 556665 3677888877763 4778888888888899999999999999998863 3556666655555444 22
Q ss_pred ----HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc----CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC---
Q 047393 163 ----VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA----GMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHG--- 230 (373)
Q Consensus 163 ----~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g--- 230 (373)
.+....+...+... .+-|...|+.+...+... ++..+|.+++.+.....| ++.....|++.|+...
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 272 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT 272 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence 24566776566543 134678888888888773 445678888888666555 5678888888887632
Q ss_pred ---------------CHHHHHHHHHHHhccCC
Q 047393 231 ---------------DMKLAKYALDKLLELDP 247 (373)
Q Consensus 231 ---------------~~~~A~~~~~~m~~~~P 247 (373)
..++|.++++.+.+.+|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 24678888888866665
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.59 E-value=2.3e-05 Score=76.86 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=58.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
++..|.-+.++|...|++.+|..+|..+....+ +...|..+..+|...|..++|.+.|+.++...|++
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 566778888999999999999999998444222 56789999999999999999999999999999988
No 73
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.58 E-value=9.2e-08 Score=56.01 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS 46 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 46 (373)
++||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 74
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.54 E-value=9.6e-05 Score=70.30 Aligned_cols=189 Identities=10% Similarity=0.039 Sum_probs=97.1
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCChhHHHHHHHHHHhCCChHHHHH
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALD 133 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~ 133 (373)
.-..|++..|..++.+..+.. +-+...|-+-+..-.++.+++.|..+|.+.. .++...|.--+..-.-.++.++|.+
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 334455555555555554433 2234455555555555555555555554433 2344444444444444455555555
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC
Q 047393 134 LFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG 212 (373)
Q Consensus 134 l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 212 (373)
++++..+. -|+ ...|..+-..+-+.++++.|...|..=.+ .++-.+..|-.|...=-+.|.+-+|..++++..-.
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 55555443 333 23444444455555555555555544322 12334455555555555566666666666653223
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 213 KL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 213 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.| +...|-..|+.=.+.|+.+.|..++.+.++--|++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 34 45566666666666666666666666666655554
No 75
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=3.8e-05 Score=78.49 Aligned_cols=224 Identities=15% Similarity=0.127 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-----SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC 86 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 86 (373)
..|-..|.-..+.++.++|.+++++.... +.+. ...|.++++.-...|.-+...++|+++.+.. -...+|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 55666777777777777777777776643 2111 1234444444444455566667777665532 22456667
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HH-HHHHHHHHHHcc
Q 047393 87 LININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--PT-TFRSALKAYALM 160 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~-t~~~ll~~~~~~ 160 (373)
|...|.+.++.++|-++|+.|.+. ....|...+..+.++++.+.|..++.+..+. -|- .+ ...-.+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 777777777777777777777643 4566777777777777777777777766554 233 21 222233334456
Q ss_pred CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 047393 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC----PLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 161 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 236 (373)
|+.+.+..+|+.....+ +--...|+.+|++-.+.|..+.+..+|++++..... -..|..-+.-=.++|+-+.++
T Consensus 1614 GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 77777777777665543 334556777777777777777777777775542221 134444444444555554444
Q ss_pred HHHHHH
Q 047393 237 YALDKL 242 (373)
Q Consensus 237 ~~~~~m 242 (373)
.+-.++
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 444333
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=2.4e-05 Score=68.04 Aligned_cols=180 Identities=15% Similarity=0.013 Sum_probs=111.5
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh-
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS----YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA- 82 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~- 82 (373)
......+..+...+...|++++|...|++.... .|+. .++..+..++.+.|++++|...++.+.+..- .+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCch
Confidence 345566777777888888888888888887763 2332 3556677778888888888888888876531 1222
Q ss_pred --HHHHHHHHhHhc--------CCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 047393 83 --VGNCLININSRC--------GKIDDADLAFKSTPE--KN-SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT 149 (373)
Q Consensus 83 --~~~~li~~~~~~--------g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 149 (373)
++..+..++.+. |+.++|.+.|+++.. |+ ...+.++..... .... . ...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~ 168 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR-------L-------AGK 168 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH-------H-------HHH
Confidence 344444445443 567777777766643 22 122221111100 0000 0 001
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 150 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
...+...+.+.|++++|...++...+.+.-.| ....+..+..++.+.|+.++|..+++.
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12345567788888888888888876643223 356777888888888888888888877
No 77
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.47 E-value=3.1e-07 Score=53.43 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI 44 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 44 (373)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3688999999999999999999999999888877
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=2.7e-05 Score=65.64 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=109.0
Q ss_pred HHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047393 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 167 (373)
+.+|...|+++.+..-.+.+..+. . .+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777777776654443322221 0 1122566677777777766654 567888888989999999999999
Q ss_pred HHHHHhHHHcCCCC-CHhHHHHHHHHH-HhcCC--HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 168 RLFLSMEEVYHIEP-SEEHYSIMVEAL-GRAGM--FEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 168 ~~~~~m~~~~g~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
..|++..+- .| +...+..+..++ ...|+ .++|.++++++++..| ++..+..+...+...|++++|...|+++
T Consensus 94 ~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988643 44 667777777764 67777 5899999999888777 5678888888999999999999999999
Q ss_pred hccCC
Q 047393 243 LELDP 247 (373)
Q Consensus 243 ~~~~P 247 (373)
.+..|
T Consensus 171 L~l~~ 175 (198)
T PRK10370 171 LDLNS 175 (198)
T ss_pred HhhCC
Confidence 98665
No 79
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.44 E-value=3.5e-07 Score=53.43 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 146 (373)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888886
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=1e-05 Score=64.52 Aligned_cols=98 Identities=11% Similarity=-0.063 Sum_probs=73.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH
Q 047393 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRV 228 (373)
Q Consensus 150 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~ 228 (373)
+.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++++...| ++..+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 445566667788888888888877543 133667777788888888888888888888777666 56777888888888
Q ss_pred cCCHHHHHHHHHHHhccCCCC
Q 047393 229 HGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.|+.++|...|+..++..|++
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCC
Confidence 888888888888888877765
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.40 E-value=0.0002 Score=70.44 Aligned_cols=228 Identities=12% Similarity=-0.006 Sum_probs=158.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 98 (373)
+.+...|++++|.+++.+.++.. +.+...|-+|...|-+.|+.+.+....-..- +-.+.|...|-.+-+...+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHH
Confidence 33344499999999999998752 3466789999999999999998876654432 223556788999999999999999
Q ss_pred HHHHHHccCCCCChhHH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCCHHHHHHHH
Q 047393 99 DADLAFKSTPEKNSLSW---TFIISARVNHGHPSEALDLFKDKQWRYTSMNP-----TTFRSALKAYALMGLVGEAYRLF 170 (373)
Q Consensus 99 ~A~~~~~~m~~~d~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~ 170 (373)
.|.-.|.+..+.++.-| ---+..|-+.|+...|.+.|.++.+... |.. .+--.++..+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999988775433333 3345678888999999999988887632 222 23334455666667667777777
Q ss_pred HHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhh-----------------------------------------
Q 047393 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI----------------------------------------- 209 (373)
Q Consensus 171 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----------------------------------------- 209 (373)
+......+-.-+...++.++..|.+...++.|......+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 776654444445556666666666666666655543321
Q ss_pred ---------------------CC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 210 ---------------------VP-GKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 210 ---------------------~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.. ..| ++..|.-+..+|...|++.+|..++..+....+..
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 00 011 33567778888999999999999999998866655
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.39 E-value=6.6e-06 Score=73.42 Aligned_cols=198 Identities=12% Similarity=0.003 Sum_probs=131.6
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC 86 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 86 (373)
.|.......+...+...++-+.++.-+++....+..+ +..........+...|++++|.+++.. + .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~----~--~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK----G--GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT----T--TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc----c--CcccHHHH
Confidence 4666655544443333344555655555544333332 333333344567788999999988854 2 45677777
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCC--ChhH---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 87 LININSRCGKIDDADLAFKSTPEK--NSLS---WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~--d~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
.+..|.+.++++.|.+.++.|.+- |... ..+.+..+.-.+.+.+|..+|+++.+. ..++..+.+.+..++...|
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999853 3322 233344343345799999999998665 6789999999999999999
Q ss_pred CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHhhCC-CCCC
Q 047393 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF-EEVLEFIKGIVP-GKLC 215 (373)
Q Consensus 162 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~-~~p~ 215 (373)
++++|..++++.... -+-+..+...+|....-.|+. +.+.+++.. ++ ..|+
T Consensus 216 ~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q-L~~~~p~ 268 (290)
T PF04733_consen 216 HYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQ-LKQSNPN 268 (290)
T ss_dssp -HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH-CHHHTTT
T ss_pred CHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHH-HHHhCCC
Confidence 999999999987543 133566777788877778887 677888888 55 4454
No 83
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=4.2e-05 Score=69.63 Aligned_cols=203 Identities=13% Similarity=0.036 Sum_probs=154.8
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 047393 23 KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 102 (373)
.+|++++|.+.|++.....-.-....||.=+ .+-..|++++|+..|-.+... +.-+..+.--+.+.|-...+...|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3688999999999988653222223343322 345678999999988776332 12456666777888888889999999
Q ss_pred HHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC
Q 047393 103 AFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179 (373)
Q Consensus 103 ~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~ 179 (373)
++-+.. ..|+...+-|...|-+.|+-..|.+..-+-..- ++-|..|...+...|....-++++..+|+... -+
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---li 655 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LI 655 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hc
Confidence 987654 458899999999999999999998876543322 45677888889999999999999999999873 46
Q ss_pred CCCHhHHHHHHHHHH-hcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 047393 180 EPSEEHYSIMVEALG-RAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGD 231 (373)
Q Consensus 180 ~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 231 (373)
.|+..-|..+|..|. |.|++.+|++++...-+.-| |......|++.+...|.
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999998886554 68999999999998333334 77888888888887774
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.39 E-value=0.00021 Score=66.15 Aligned_cols=90 Identities=9% Similarity=0.034 Sum_probs=42.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH--hHHHHHHHHHHhc
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE--EHYSIMVEALGRA 196 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~ 196 (373)
...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|..+++.........|+. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334455555555555555555442 2233444445555555555555555555543321111221 1233444555555
Q ss_pred CCHHHHHHHHHhh
Q 047393 197 GMFEEVLEFIKGI 209 (373)
Q Consensus 197 g~~~~A~~~~~~~ 209 (373)
|+.++|..+++++
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555553
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.1e-05 Score=69.59 Aligned_cols=210 Identities=11% Similarity=0.004 Sum_probs=159.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CCCCchhHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKR--GLISHPAVGNC 86 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ 86 (373)
..++|-++---|.-.|+..+|.+.|.+... +.|. ...|.....+++-.+..++|...+...-+. |.. -+..|.
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYl- 386 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYL- 386 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHH-
Confidence 457788888888888888888888887654 3333 235777778888888888888888776443 211 122222
Q ss_pred HHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHH
Q 047393 87 LININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWR----Y--TSMNPTTFRSALKAY 157 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g--~~p~~~t~~~ll~~~ 157 (373)
.--|.+.+.++.|.+.|.+.. ..|+...+-+.-.....+.+.+|..+|+..+.. + ......+++.+-.+|
T Consensus 387 -gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 387 -GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred -HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 233778888999999987655 347888888877777788899999999887621 1 112556789999999
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~ 226 (373)
.+.+..++|...++..... .+-+..++.++.-.|...|+++.|.+.|.+++.+.|+..+-..++.-+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999998653 355889999999999999999999999999888999887777777643
No 86
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=0.00038 Score=64.03 Aligned_cols=237 Identities=11% Similarity=0.072 Sum_probs=162.8
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CC-CCchhHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR-GL-ISHPAVGN 85 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~-~~~~~~~~ 85 (373)
+|+...|++.|+.=.+-..++.|..++++..- +.|++.+|.-...-=-+.|.+..|.++|+..++. |- .-+...++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 68888999999888888889999999888875 5688888888777777788888888888876543 10 01112222
Q ss_pred HHHHHhHhcCCHHHHHHHHc----cCC----------------------------------------CC---ChhHHHHH
Q 047393 86 CLININSRCGKIDDADLAFK----STP----------------------------------------EK---NSLSWTFI 118 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~----~m~----------------------------------------~~---d~~~~~~l 118 (373)
+....=.++..++.|.-+|+ .++ .. |-.+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 22222233334444444432 111 11 44556666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHH---HHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHH
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNP-------TTFRS---ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~---ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 188 (373)
+..-...|+.+...++|++.... ++|-. ..|.- .+..-....+++.+.++|+...+ =++-...|+.-
T Consensus 329 lrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaK 405 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAK 405 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHH
Confidence 66667778999999999988765 45522 12221 22222356788888899988864 24445667766
Q ss_pred HHHHHH----hcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 189 MVEALG----RAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 189 li~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+--+|+ ++.++..|.+++..++...|-..+|...|..=.+.++++....++++-++..|.+
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 655554 5788888999998888878888888888888888889999999999998888888
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.35 E-value=0.00019 Score=71.25 Aligned_cols=237 Identities=14% Similarity=0.050 Sum_probs=152.3
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-C-CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCch--hHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCG-F-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP--AVG 84 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~ 84 (373)
-|.+..|.|-+-|.-.|++..++.+...+..... . .-..+|-.+.+++-..|++++|...|.+..+.. ++- ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 5778888888889999999999998888776431 1 123457778888889999999999997766543 443 344
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047393 85 NCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHG----HPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 157 (373)
-.|..+|.+.|+++.|...|+.+.+ | +..|...|...|...+ ..+.|..++.+..+.- +-|...|..+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 5677889999999999998887763 3 4566666666666654 3455555555554432 33555666665554
Q ss_pred HccCCHHHHHHHHHHhH---HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC-----CCCH------HHHHHHH
Q 047393 158 ALMGLVGEAYRLFLSME---EVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG-----KLCP------LIWRTLL 223 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~---~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~p~~------~~~~~li 223 (373)
-. +++..++.+|.... ...+-.+.+...|.+.......|.+.+|...|..+... .++. .+-..+.
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43 34444455554432 11233456667777777777777777777777765431 1222 1222334
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 224 LSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..+-..++.+.|.+.|..+.+..|.-
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 44445567777777777777766644
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.34 E-value=0.00047 Score=63.79 Aligned_cols=94 Identities=16% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC---CH--HHHHHHHHHH
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL---CP--LIWRTLLLSS 226 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~~--~~~~~li~~~ 226 (373)
.+...+...|++++|...+++..+. -+.+...+..+...|...|++++|..++++.++..| +. ..|..+...+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344455566666666666655432 122344455555556666666666666665444222 11 2344455555
Q ss_pred HHcCCHHHHHHHHHHHhccCC
Q 047393 227 RVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~P 247 (373)
...|+.++|..++++.....|
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHCCCHHHHHHHHHHHhcccc
Confidence 666666666666666554333
No 89
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=9.8e-07 Score=51.24 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 145 (373)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
No 90
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=3e-05 Score=71.25 Aligned_cols=186 Identities=15% Similarity=0.078 Sum_probs=144.8
Q ss_pred CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
.|+.-.|.+-|+..++....++ ..|--+..+|....+-++..+.|+... ..|+.+|.--...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 4778888888888887653332 237677778999999999999998765 336677777777777788899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
++.+... +-+...|..+..+.-+.+.++++...|++.+++ ++.-+..|+-....+...+++++|.+.|+.++...|+
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988763 335667778878888899999999999999775 4667788999999999999999999999998886665
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 216 ---------PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 216 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+..--.++-.-. .+++..|.+++++..+++|..
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKC 536 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchH
Confidence 122222222222 389999999999999999976
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=1.7e-05 Score=63.26 Aligned_cols=102 Identities=10% Similarity=-0.120 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
+..+..+...+...|++++|...|+...... +.+..+|..+..++...|++++|...|+..... -+.+...+..+..
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~ 100 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 3334445566667777777777777766553 335666677777777777777777777777542 2335666777777
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
++.+.|+.++|...|++++...|+.
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7777777777777777766666643
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00014 Score=74.49 Aligned_cols=200 Identities=12% Similarity=0.084 Sum_probs=163.6
Q ss_pred CCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCC---CchhHHHHHHHHhHhcCCHHHHHHHHccCCCC-C-hhHH
Q 047393 43 FIDS-YSICDILNSCLNPILLNVGTQAQAYMTKR-GLI---SHPAVGNCLININSRCGKIDDADLAFKSTPEK-N-SLSW 115 (373)
Q Consensus 43 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-d-~~~~ 115 (373)
.||. ..|-.-|....+.++++.|+++.++.+.. ++. --...|.++++.-.--|.-+...++|++..+- | ...|
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence 3654 46888888888999999999999998654 221 12457888888777778888889999988753 3 4678
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC---HhHHHHHHHH
Q 047393 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS---EEHYSIMVEA 192 (373)
Q Consensus 116 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~ 192 (373)
..|...|.+.++.++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+. .|. +....-.+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 89999999999999999999999876 3467789999999999999999999999988654 454 4455556677
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 047393 193 LGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 246 (373)
-.+.|+.+.+..+|+..+...| -...|+..|+.=.++|+.+.+..+|++++.+.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 7789999999999999666566 56899999999999999999999999999843
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.9e-05 Score=73.87 Aligned_cols=191 Identities=16% Similarity=0.110 Sum_probs=149.3
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHH
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEAL 132 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 132 (373)
+.+.|++.+|.-.|+..++.. +-+...|--|.......++-..|+..+++..+- |....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457788999999999988776 567889999998999999888898888877643 5667777778899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047393 133 DLFKDKQWRYTS--------MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLE 204 (373)
Q Consensus 133 ~l~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 204 (373)
..++.-+....+ ++..+=+. ..+.....+....++|-++....+..+|..+...|--.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887654210 01110000 12223334556667777776766766788888888888999999999999
Q ss_pred HHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 205 FIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 205 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
-|+.++..+| |..+||.|...++...+.++|...|.+.+++.|.-
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 9999999888 67899999999999999999999999999999854
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=3e-05 Score=60.98 Aligned_cols=101 Identities=14% Similarity=0.001 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLS 225 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 225 (373)
......+...+...|+.++|...++..... .+.+...+..+...+.+.|++++|...+++++...| ++..+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 344556666777788888888888887553 244667777888888888888888888888666555 46777777788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 226 SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+...|+.++|...++...+.+|++
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHhcccc
Confidence 888888888888888888877755
No 95
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.25 E-value=1.2e-06 Score=49.63 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCG 42 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 42 (373)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5788888888888888888888888888764
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=4.7e-05 Score=73.17 Aligned_cols=211 Identities=14% Similarity=0.045 Sum_probs=161.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047393 16 LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG 95 (373)
Q Consensus 16 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 95 (373)
.+...+...|-...|+.+|++... +..++.+|+..|+-..|..+..+-.+ -+||...|-.+.+......
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 345566778888888888887643 55677788888888888888887776 3788889999998888888
Q ss_pred CHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 96 KIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 96 ~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
-+++|.++++....+ +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-..-.+..+.++++.|.+.|.....
T Consensus 472 ~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 889999988776543 22222222334788899988888765543 34567787777778889999999999987753
Q ss_pred HcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 176 VYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 176 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
..| +...||.+-.+|.+.|+..+|...+.++++..- +...|...+....+.|.+++|.+.+.++..
T Consensus 548 ---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 ---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred ---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 355 568899999999999999999999999877433 456777778888899999999999998876
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00021 Score=72.19 Aligned_cols=217 Identities=14% Similarity=0.028 Sum_probs=118.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYS-ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
.+...|-.|+..+...+++++|.++.+...+ ..|+... |-.+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~--------------- 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NL--------------- 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------
Confidence 3556667777777777777777777765544 2344332 22222234444444444333 21
Q ss_pred HHHhHhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 88 ININSRCGKIDDADLAFKSTPE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
++......++.-...+...|.. .+..++..+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 1112222222111111122211 123456677778888888888888888888776 45677888888888888 8888
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHH---HHh--cCCHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEA---LGR--AGMFEEVLEFIKGIVP---GKLCPLIWRTLLLSSRVHGDMKLAKY 237 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~---~~~--~g~~~~A~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~ 237 (373)
|.+++......+ .+..-|+.+... ++. ..+.+.-.++.+++.. ...-+.++..+-..|...++++++..
T Consensus 168 A~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 168 AITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 888887775541 111122222211 111 1222222233333111 12233556666677777788888888
Q ss_pred HHHHHhccCCCC
Q 047393 238 ALDKLLELDPGM 249 (373)
Q Consensus 238 ~~~~m~~~~P~~ 249 (373)
+++.+++.+|++
T Consensus 245 iLK~iL~~~~~n 256 (906)
T PRK14720 245 ILKKILEHDNKN 256 (906)
T ss_pred HHHHHHhcCCcc
Confidence 888888888877
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=5.1e-05 Score=71.10 Aligned_cols=219 Identities=14% Similarity=-0.008 Sum_probs=165.8
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047393 21 CIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDD 99 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 99 (373)
+.+.|++-+|.-.|+..... .| +...|.-|-..-...++=..|...+.+.++.. +-|..+.-+|.-.|...|.=.+
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 57889999999999988875 35 55678888888888888888888888887754 4467788888889999999999
Q ss_pred HHHHHccCCC--C----------ChhHHHHHHHHHHhCCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 100 ADLAFKSTPE--K----------NSLSWTFIISARVNHGHPSEALDLFKDK-QWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 100 A~~~~~~m~~--~----------d~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
|.+.|+.-.. | +..+-+. ..+..........++|-++ .+.+.++|......|--.|--.|.+++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999875421 1 1000000 1122222234455555555 4455446666666666667789999999
Q ss_pred HHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 167 YRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+.|+..... .| |..+||.|-..++...+.++|..-|.+++.++|+- ..+..|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998754 56 77999999999999999999999999999999974 5778888899999999999999988887
Q ss_pred cCC
Q 047393 245 LDP 247 (373)
Q Consensus 245 ~~P 247 (373)
+.+
T Consensus 527 mq~ 529 (579)
T KOG1125|consen 527 MQR 529 (579)
T ss_pred hhh
Confidence 654
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00048 Score=58.03 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=104.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 97 (373)
+..|...|++..+..-.+.+.. |. ..+...++.+++...++..++.. +.|...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567888888876443322211 11 01223566677777777776665 56788888888888888888
Q ss_pred HHHHHHHccCCC---CChhHHHHHHHH-HHhCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 98 DDADLAFKSTPE---KNSLSWTFIISA-RVNHGH--PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 98 ~~A~~~~~~m~~---~d~~~~~~li~~-~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
++|...|++..+ .+...+..+..+ +...|+ .++|.+++++..+.+ +-+..++..+...+.+.|++++|...|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888886653 366777777775 356676 488888888888764 3356677777778888888888888888
Q ss_pred HhHHHcCCCCCHhHH
Q 047393 172 SMEEVYHIEPSEEHY 186 (373)
Q Consensus 172 ~m~~~~g~~p~~~~~ 186 (373)
.+.+. .+|+..-+
T Consensus 169 ~aL~l--~~~~~~r~ 181 (198)
T PRK10370 169 KVLDL--NSPRVNRT 181 (198)
T ss_pred HHHhh--CCCCccHH
Confidence 88653 35555433
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=0.0012 Score=61.08 Aligned_cols=161 Identities=13% Similarity=0.004 Sum_probs=109.8
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 047393 79 SHPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT-TFRSALKA 156 (373)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~ 156 (373)
|+...+...+.+......-..+-..+.+-.+ .....+....-.+...|++++|+..++.+... .||.. ........
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4455555555544333222222222222222 23333444444556678899999999998776 45544 44455677
Q ss_pred HHccCCHHHHHHHHHHhHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 047393 157 YALMGLVGEAYRLFLSMEEVYHIEPS-EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 157 ~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 234 (373)
+.+.++..+|.+.++.+... .|+ ....-.+-.+|.+.|++.+|..++++.....| |+..|..|..+|...|+..+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 88899999999999988654 565 56666788899999999999999988555455 78899999999999999888
Q ss_pred HHHHHHHHhc
Q 047393 235 AKYALDKLLE 244 (373)
Q Consensus 235 A~~~~~~m~~ 244 (373)
+.....+...
T Consensus 427 a~~A~AE~~~ 436 (484)
T COG4783 427 ALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHH
Confidence 8887777665
No 101
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.13 E-value=3.1e-06 Score=47.89 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYT 143 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 143 (373)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777766653
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.001 Score=66.47 Aligned_cols=128 Identities=7% Similarity=-0.073 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHH
Q 047393 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISAR 122 (373)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~ 122 (373)
+..+-.|..+..+.|..++|..+++...+.. +-+......+...+.+.+++++|...+++... | +....+.+..++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4444445555555555555555555554432 22233444455555555555555555555442 2 233444444555
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
.+.|++++|.++|++....+ +-+..++..+-.++-..|+.++|...|+....
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555421 22345555555555555555555555555543
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00098 Score=56.58 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=116.2
Q ss_pred chHHHHHHHHHHHH---cC-CCCchh-HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHH---HHHHHhCCChHHHH
Q 047393 61 LLNVGTQAQAYMTK---RG-LISHPA-VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI---ISARVNHGHPSEAL 132 (373)
Q Consensus 61 ~~~~a~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~l---i~~~~~~g~~~~A~ 132 (373)
+.++..++..+++. .| ..++.. .|.-++-+..-.|+.+.|..+++.+...-+.++... ..-+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 34455555554432 23 445543 344445555566777777777766543212222211 11244567788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC
Q 047393 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG 212 (373)
Q Consensus 133 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 212 (373)
++++...+.. +.|.+++--=+...--.|.--+|++-+....+. +..|...|.-+-+.|...|++++|.--+++++-+
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8888887775 456666665555555566666777776666554 3678888888888888888888888888886666
Q ss_pred CC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCC
Q 047393 213 KL-CPLIWRTLLLSSRVHG---DMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 213 ~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~P~~ 249 (373)
.| ++..+..+...+...| +.+.|.+.|.+..++.|.+
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 77 5566666666655444 5667788888888877744
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.00017 Score=66.81 Aligned_cols=121 Identities=21% Similarity=0.125 Sum_probs=72.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc
Q 047393 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196 (373)
Q Consensus 117 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 196 (373)
+|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +-+........+.+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 34445555666666666666666553 443 2235555555566666666666665431 23445555555566666
Q ss_pred CCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 197 GMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 197 g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
++.+.|+++.+++....|+. .+|..|..+|...|+++.|.-.+.-+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777666666643 477777777777777777776666544
No 105
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=5e-05 Score=56.09 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHcCCCCchhHH
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCG-FIDSYSICDILNSCLNPI--------LLNVGTQAQAYMTKRGLISHPAVG 84 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~~~ 84 (373)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++...+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 35567777888999999999999999999 899999999999887642 355678999999999999999999
Q ss_pred HHHHHHhHh
Q 047393 85 NCLININSR 93 (373)
Q Consensus 85 ~~li~~~~~ 93 (373)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00099 Score=56.81 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=83.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCCh
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHP 128 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~ 128 (373)
+-.++...|+-+....+...... .-+.|....+.++....+.|++..|...|++... +|..+|+.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 33444444444444444433221 1133444555566666666666666666665542 3566666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 129 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
++|..-|.+..+.. .-+...+|.+.-.+.-.|+.+.|..++...... -.-|..+-..+.......|++++|..+...
T Consensus 151 ~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 151 DEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666655541 223344555555555566666666666655332 122555555666666666666666666554
No 107
>PLN02789 farnesyltranstransferase
Probab=98.07 E-value=0.0011 Score=60.19 Aligned_cols=190 Identities=10% Similarity=-0.017 Sum_probs=134.8
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhCCCh--H
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPE---KNSLSWTFIISARVNHGHP--S 129 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~--~ 129 (373)
+...+..++|..+...+++.. +-+..+|+.--.++.+.| ++++++..++++.+ .+..+|+-....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 344567888999999888764 344556776666666667 67999999988763 3556677555555566653 6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc---CCH----HHH
Q 047393 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA---GMF----EEV 202 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~----~~A 202 (373)
++++.++++.+.. +-|..+|+...-++.+.|+++++++.++++.+.. +-|...|+.....+.+. |.. +++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHH
Confidence 7888888888764 4477889888888888999999999999997752 34566676665555444 222 467
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCC
Q 047393 203 LEFIKGIVPGKL-CPLIWRTLLLSSRVH----GDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 203 ~~~~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~P~~ 249 (373)
.++..+++...| |...|+-+...+... ++..+|.+++.+....+|+.
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 777767677777 567888888888773 34466888888877766544
No 108
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.0024 Score=58.90 Aligned_cols=232 Identities=11% Similarity=-0.013 Sum_probs=162.4
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHH---cCCCchHHHHHHHHHHHHcCCCC
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-------SICDILNSC---LNPILLNVGTQAQAYMTKRGLIS 79 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~m~~~g~~~ 79 (373)
|--+|-..++.-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++.+.++|+..++ =++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 4456666677677778888888999888753 666321 121111122 245778888888888877 3455
Q ss_pred chhHHHHHHHHhH----hcCCHHHHHHHHccCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047393 80 HPAVGNCLININS----RCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153 (373)
Q Consensus 80 ~~~~~~~li~~~~----~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 153 (373)
...||.-+=-+|+ ++.++..|.+++.... .|..-+|...|..=.+.+.++....++++.++-+ +-|..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 5667766655554 5678888888887654 5777788888888888888888888888888765 4467778777
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-----H
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR-----V 228 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~-----~ 228 (373)
...-...|+.+.|..+|+-...+..+......|-+.|+-=...|.+++|..++++.+...+...+|-++..--. +
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 77777788899999998888665333334566777777777888899999988887765666667777665433 3
Q ss_pred cC-----------CHHHHHHHHHHHhc
Q 047393 229 HG-----------DMKLAKYALDKLLE 244 (373)
Q Consensus 229 ~g-----------~~~~A~~~~~~m~~ 244 (373)
.+ .+..|..+|++...
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHH
Confidence 33 45677777777654
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.04 E-value=0.00082 Score=67.12 Aligned_cols=130 Identities=8% Similarity=0.033 Sum_probs=79.2
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 047393 78 ISHPAVGNCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSA 153 (373)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 153 (373)
+.+...+-.|.....+.|.+++|+.+++...+ | +...+..+...+.+.+++++|+...++.... .|+ ......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 44566666666666666777777776666552 3 3445555666666667777776666666655 333 3344455
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
..++.+.|+.++|..+|++.... .+-+..++..+-.++-..|+.++|...|++++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566667777777777666542 122355666666666666777777776666554
No 110
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.0003 Score=62.76 Aligned_cols=134 Identities=12% Similarity=0.107 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
.+|-.++....+.+..+.|..+|.+..+.+ .-+...|...... +...++.+.|..+|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 478888888888888999999999998653 2233444443333 233677888999999998875 667788999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKLCP----LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+.+.|+.+.|..+|++++..-|.. ..|...++-=.+.|+.+.+.++.+++.+.-|+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999988755544 499999999999999999999999999866654
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0048 Score=52.52 Aligned_cols=191 Identities=11% Similarity=0.042 Sum_probs=143.2
Q ss_pred cCCHhHHHHHHHHHHh---cC-CCCCHHH-HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047393 24 AKDYEMVHELLERIQL---CC-GFIDSYS-ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98 (373)
Q Consensus 24 ~g~~~~A~~l~~~m~~---~g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 98 (373)
..+.++.++++.++.. .| ..|+..+ |-.++-+....|+.+.|...++.+...- +-+..+-..=.-.+--.|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4578999999998875 35 6677765 6667777788899999999999987653 222222221122244568999
Q ss_pred HHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 99 DADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 99 ~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
+|.++++.+.+. |.++|---+...-..|+-.+|++-+.+..+. +..|...|.-+...|...|+++.|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999998853 6777877777777888888999988888776 677999999999999999999999999999964
Q ss_pred HcCCCC-CHhHHHHHHHHHHhc---CCHHHHHHHHHhhCCCCC-CHHHH
Q 047393 176 VYHIEP-SEEHYSIMVEALGRA---GMFEEVLEFIKGIVPGKL-CPLIW 219 (373)
Q Consensus 176 ~~g~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~p-~~~~~ 219 (373)
. .| +...+..+.+.+--. .+..-|.++|.+++++.| +...+
T Consensus 183 ~---~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 183 I---QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred c---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 3 55 555555666655544 356679999999888666 44433
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.00022 Score=66.00 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=105.1
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047393 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 164 (373)
.+|+..+...++++.|.++|+++.+.++.....++..+...++-.+|.+++++..+.. +-+......-...+.+.++.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 3455666677999999999999998877777888999999999999999999988652 446666666777789999999
Q ss_pred HHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 165 EAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 165 ~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
.|..+.+++.+. .| +..+|..|..+|.+.|++++|+..++. ++..|
T Consensus 252 lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs-~Pm~~ 298 (395)
T PF09295_consen 252 LALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNS-CPMLT 298 (395)
T ss_pred HHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhc-CcCCC
Confidence 999999999654 56 557999999999999999999999999 77443
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00059 Score=58.14 Aligned_cols=156 Identities=12% Similarity=-0.000 Sum_probs=122.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 94 (373)
.-.-..+...|+-+.++.+..+.... -.-|............+.|++.+|...+.+..... ++|..+|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33455566667777776666554431 22344556668888999999999999999997655 78999999999999999
Q ss_pred CCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 95 GKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 95 g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
|++++|..-|.+.. ..+....|.|.-.+.-.|+.+.|..++......+ .-|...-..+.......|++++|.++-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999987665 3477888999999999999999999999988775 3366666777778889999999998775
Q ss_pred Hh
Q 047393 172 SM 173 (373)
Q Consensus 172 ~m 173 (373)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00026 Score=55.58 Aligned_cols=100 Identities=15% Similarity=0.009 Sum_probs=54.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHH
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 194 (373)
...+...+...|++++|.+.|+...+.+ +.+...+..+...+.+.|++++|...+++..+. .+.+...+..+...|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 3444455555566666666665555543 334455555555555666666666666655332 1334455555555666
Q ss_pred hcCCHHHHHHHHHhhCCCCCCHH
Q 047393 195 RAGMFEEVLEFIKGIVPGKLCPL 217 (373)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~ 217 (373)
..|+.++|.+.|+++++..|+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 97 ALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HcCCHHHHHHHHHHHHHhccccc
Confidence 66666666666666555445443
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00022 Score=54.40 Aligned_cols=99 Identities=19% Similarity=0.152 Sum_probs=48.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHH
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC----PLIWRTLLLS 225 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~li~~ 225 (373)
......+.+.|++++|...++.+.+.+.-.| ....+..+...+.+.|++++|.+.|+.+....|+ +..+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3334444455555555555555543311101 1223334555555555555555555553333332 2345555555
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 226 SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+...|+.++|...++++.+..|++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCC
Confidence 555666666666666665555543
No 116
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00016 Score=51.83 Aligned_cols=94 Identities=24% Similarity=0.223 Sum_probs=50.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHG 230 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g 230 (373)
.+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++.+...| +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 33444445555666666555553321 22234455555555556666666666665444333 2345555566666666
Q ss_pred CHHHHHHHHHHHhccCC
Q 047393 231 DMKLAKYALDKLLELDP 247 (373)
Q Consensus 231 ~~~~A~~~~~~m~~~~P 247 (373)
+.+.|...+....+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666655544
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.0023 Score=59.23 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=57.1
Q ss_pred hHhcCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 047393 91 NSRCGKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 166 (373)
+.+.|++++|+..++.+. .| |+..+......+.+.|+..+|.+.++++... .|+ .....++-+++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 334455555555555543 23 3333444444555555555555555555543 343 33333444555555555555
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
..+++.... ..+-|+..|..|..+|...|+..+|..-..+
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 555555432 2234555555555555555555555555444
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.92 E-value=0.0023 Score=61.09 Aligned_cols=238 Identities=14% Similarity=0.029 Sum_probs=134.4
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH
Q 047393 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC 86 (373)
Q Consensus 7 ~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 86 (373)
|..-...|-.++.+|- .+++...+.+.+.+.+. .+--..|....--.+...|+-++|......-.+.. ..+.+.|..
T Consensus 4 ~~KE~~lF~~~lk~yE-~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv 80 (700)
T KOG1156|consen 4 SPKENALFRRALKCYE-TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHV 80 (700)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHH
Confidence 3344455667777554 67788888888877762 22223344443344566788999988887776644 345677887
Q ss_pred HHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047393 87 LININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 163 (373)
+.-.+....++++|.+.|.... +.|...|.-+--.-.+.|+++...+......+.. +-....|..+..++--.|+.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 7777777888999999998654 2344555444444455555555555555554441 22334555555555556666
Q ss_pred HHHHHHHHHhHHHcCCCCCHhHHHHHH------HHHHhcCCHHHHHHHHHhhCC-CCCCH-HHHHHHHHHHHHcCCHHHH
Q 047393 164 GEAYRLFLSMEEVYHIEPSEEHYSIMV------EALGRAGMFEEVLEFIKGIVP-GKLCP-LIWRTLLLSSRVHGDMKLA 235 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~-~~p~~-~~~~~li~~~~~~g~~~~A 235 (373)
..|..+.++..+...-.|+...|.... ....+.|..++|.+-+.+ .+ ..-|- ..-.+-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-~e~~i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-NEKQIVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh-hhhHHHHHHHHhhhHHHHHHHHhhHHhH
Confidence 666666666644322234444443222 223345555555555554 22 01111 1222333444556666666
Q ss_pred HHHHHHHhccCCCC
Q 047393 236 KYALDKLLELDPGM 249 (373)
Q Consensus 236 ~~~~~~m~~~~P~~ 249 (373)
..++..++...||+
T Consensus 239 ~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 239 VKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHHHHhhCchh
Confidence 66666666666666
No 119
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.90 E-value=0.0028 Score=66.43 Aligned_cols=233 Identities=10% Similarity=0.047 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--C-CC--CHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCC--C-
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC--G-FI--DSYSICDILNSCLNPILLNVGTQAQAYMTK----RGLI--S- 79 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g--~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~--~- 79 (373)
...+.+...+...|++++|...+++..... . .+ ...++..+...+...|++++|...+++... .|.. +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 345666677788999999999998876521 1 11 123455566677889999999998887654 2321 1
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCC------C--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHH
Q 047393 80 HPAVGNCLININSRCGKIDDADLAFKSTPE------K--NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS-MNPTTF 150 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 150 (373)
....+..+...+...|++++|...+++... + ...++..+...+...|++++|.+.+++.....-. .....+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 223445556667778999999988876532 1 1334455666788899999999998887542111 111111
Q ss_pred -----HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCC
Q 047393 151 -----RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE----EHYSIMVEALGRAGMFEEVLEFIKGIVPG------KLC 215 (373)
Q Consensus 151 -----~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~ 215 (373)
...+..+...|+.+.|..++...... . .... .....+..++...|+.++|...+++++.. .++
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11224445689999999998776321 1 1111 11345667788899999999999886541 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 047393 216 -PLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246 (373)
Q Consensus 216 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 246 (373)
..+...+..++.+.|+.++|...+.+..+..
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2466677788899999999999999998843
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.0013 Score=52.34 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH--hHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMN---PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE--EHYSI 188 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~ 188 (373)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+..... .-.|+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 444555555 3677777777777777653 222 123333445667778888888888877654 212221 23334
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 189 MVEALGRAGMFEEVLEFIKGIVP-GKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
|...+...|++++|+..++. .. ....+..+......+.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56667777888888888876 43 2224456666677778888888888877654
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00077 Score=53.76 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCch--hHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS----YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP--AVGN 85 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~ 85 (373)
..|..++..+ ..++...+.+.++.+.... |+. .....+...+...|++++|...|+........|+. ...-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3466666666 3777787877777777642 222 23333456677778888888888888776522322 2333
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHH
Q 047393 86 CLININSRCGKIDDADLAFKSTPEK--NSLSWTFIISARVNHGHPSEALDLFKD 137 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~ 137 (373)
.|...+...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4566677778888888877665433 344555666677777777777777764
No 122
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0023 Score=60.51 Aligned_cols=216 Identities=15% Similarity=0.099 Sum_probs=138.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH--HHHHh--H
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC--LININ--S 92 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~--~ 92 (373)
=++-+.+.|++++|.+..+++...+ +-|...+..-+-++.+.+.+++|+.+.+. .+. ..+++. +=.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHH
Confidence 4566788899999999999998754 33445566667778888999999855433 221 122222 23455 4
Q ss_pred hcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
+.+..|+|+..++.....|..+-..-...+.+.|++++|+++|+.+.+.+..-- ..--..++.+-. .-.+. +.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~- 164 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL- 164 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH-
Confidence 679999999999966665655666667778899999999999999987753221 111122222111 11111 22
Q ss_pred HhHHHcCCCCCHhHHHHH---HHHHHhcCCHHHHHHHHHhhCC--------CCCC---H-----HHHHHHHHHHHHcCCH
Q 047393 172 SMEEVYHIEPSEEHYSIM---VEALGRAGMFEEVLEFIKGIVP--------GKLC---P-----LIWRTLLLSSRVHGDM 232 (373)
Q Consensus 172 ~m~~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~--------~~p~---~-----~~~~~li~~~~~~g~~ 232 (373)
+.....| ..+|..+ ...+...|++.+|+++++.+++ -..+ + ..--.|...+-..|+.
T Consensus 165 ---q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 ---QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred ---HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 2223344 2244433 3455678999999999998632 0111 1 2333455567789999
Q ss_pred HHHHHHHHHHhccCCCC
Q 047393 233 KLAKYALDKLLELDPGM 249 (373)
Q Consensus 233 ~~A~~~~~~m~~~~P~~ 249 (373)
++|..++..+++.+|-+
T Consensus 241 ~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999866544
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.86 E-value=0.0091 Score=53.05 Aligned_cols=222 Identities=10% Similarity=-0.031 Sum_probs=161.8
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCH----H------------HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH
Q 047393 20 ACIKAKDYEMVHELLERIQLCCGFIDS----Y------------SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV 83 (373)
Q Consensus 20 ~~~~~g~~~~A~~l~~~m~~~g~~p~~----~------------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 83 (373)
.+.+.|.+++|..=|+...+.. |+. . .....+..+.-.|+...|......+++.- +.|...
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 4678999999999999988753 321 1 12223445566789999999999988764 578888
Q ss_pred HHHHHHHhHhcCCHHHHHHHHcc---CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH------
Q 047393 84 GNCLININSRCGKIDDADLAFKS---TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL------ 154 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~---m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll------ 154 (373)
|..-..+|...|++..|+.=++. +...++.++.-+-..+..-|+.+.++...++.++. .||...+-..-
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 88889999999999999765544 44557777777778888899999999888888765 57754321111
Q ss_pred -------HHHHccCCHHHHHHHHHHhHHHcCCCCC--Hh---HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHH
Q 047393 155 -------KAYALMGLVGEAYRLFLSMEEVYHIEPS--EE---HYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRT 221 (373)
Q Consensus 155 -------~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 221 (373)
......++|.++..-.+...+. .|. .. .+..+-.++...|++.+|.+...+++.+.|+ +.++--
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHH
Confidence 1233456777777766666443 444 22 2334445666679999999999998887885 778877
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 222 LLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
=..+|.-...++.|+.=|+...+.+|++
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 7889988899999999999999988877
No 124
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.85 E-value=0.014 Score=57.13 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHH
Q 047393 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALG 194 (373)
Q Consensus 116 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 194 (373)
......+.+.+..++|...+.+..+. .+-....|...-..+...|.+++|.+.|.... -+.| ++...+++..++.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHH
Confidence 34445566666666666655555443 12334444444455566777777777777653 3455 4567777888888
Q ss_pred hcCCHHHHHH--HHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 195 RAGMFEEVLE--FIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 195 ~~g~~~~A~~--~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.|+..-|.. ++..+++.+| ++..|..+...+.+.|+.+.|.+.|.-..++++.+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 8887766666 7777677776 56788888888888888888888888877766544
No 125
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.84 E-value=0.00075 Score=65.22 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=77.3
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH
Q 047393 21 CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 100 (373)
-..+.+|.+|+.+++.++.+.. -.--|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+|++|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 3445667777777776665432 2223566667777777777777777432 2355567777777777777
Q ss_pred HHHHccCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 101 DLAFKSTPEK--NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 101 ~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
.++-.+...| ..+.|-+-..-+-++|++.+|.+++-... .|+. .|..|-+.|..+...++.+
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 7777666544 34455555555666777777766654332 2221 2444555555555554443
No 126
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.81 E-value=0.032 Score=53.64 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=94.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------CC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKN-------SLSWTFIISARVNHGHPSEALDLFKDKQWRY-----------TS 144 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~ 144 (373)
.|-.+.+.|-..|+++.|..+|++..+-+ ..+|......=.++.+++.|+.+++...... .+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 45566777888888888888888776432 3456666666667778888888777654221 11
Q ss_pred C------CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC--CCCH
Q 047393 145 M------NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG--KLCP 216 (373)
Q Consensus 145 p------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~ 216 (373)
+ +...|...++.--..|-++....+|+.+..- .+. ++...-.....+-.+.-++++++++++-+.+ .|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 1223333444444445666666666666432 221 1111112222334456677788888775552 3444
Q ss_pred -HHHHHHHHHHHH-c--CCHHHHHHHHHHHhccCC
Q 047393 217 -LIWRTLLLSSRV-H--GDMKLAKYALDKLLELDP 247 (373)
Q Consensus 217 -~~~~~li~~~~~-~--g~~~~A~~~~~~m~~~~P 247 (373)
..|+..+.-+.+ - ...+.|..+|++.++.-|
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 467776655432 2 267888888888887555
No 127
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.80 E-value=0.00014 Score=60.42 Aligned_cols=89 Identities=11% Similarity=0.062 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHHc-----CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCC----------------CchHHHH
Q 047393 8 SDVEIPWNLLLKACIKA-----KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP----------------ILLNVGT 66 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 66 (373)
.+|-.+|..+|..|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 56777888888888754 56666666677888888888888888888877553 2345678
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047393 67 QAQAYMTKRGLISHPAVGNCLININSRCGK 96 (373)
Q Consensus 67 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 96 (373)
+++++|...|+.||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888888876654
No 128
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.00047 Score=51.02 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhHHHcCCCCCH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYALMG--------LVGEAYRLFLSMEEVYHIEPSE 183 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~g~~p~~ 183 (373)
.|....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+-++.. ++-+.+.+|+.|... +++|+.
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~ 104 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPND 104 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcH
Confidence 3445567777778999999999999999999 999999999999877653 234567888888765 899999
Q ss_pred hHHHHHHHHHHh
Q 047393 184 EHYSIMVEALGR 195 (373)
Q Consensus 184 ~~~~~li~~~~~ 195 (373)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00042 Score=49.55 Aligned_cols=97 Identities=19% Similarity=0.124 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHH
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALG 194 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 194 (373)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++..... .+.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 4455666677777777777777776552 233456666677777777788888777776443 1334456667777777
Q ss_pred hcCCHHHHHHHHHhhCCCCC
Q 047393 195 RAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p 214 (373)
..|+.++|...+.+..+..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 77888888777777444333
No 130
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.79 E-value=0.00026 Score=58.84 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=68.0
Q ss_pred HHHccC--CCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------------
Q 047393 102 LAFKST--PEKNSLSWTFIISARVNH-----GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM-------------- 160 (373)
Q Consensus 102 ~~~~~m--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-------------- 160 (373)
..|+.. ..+|..+|..++..|.+. |..+=...-++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 345666666666666543 55666666677777778888888888888775432
Q ss_pred --CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047393 161 --GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM 198 (373)
Q Consensus 161 --g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 198 (373)
.+.+-|.+++++| +.+|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2456788999999 667999999999999999877665
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.78 E-value=0.0012 Score=63.81 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
..|.-+|-+|...|+-.+|.++..+-.+ -+||+..|..+.+......-++.|.++.+..-.. .-..+....
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~ 495 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLI 495 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccc
Confidence 4588899999999999999998887776 4789999999998888877788888888765322 222222233
Q ss_pred HhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 047393 92 SRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 167 (373)
.+.++++++.+.|+.-. .--..+|-.+-.+..+.++++.|.+-|...... .|| ...||++-.+|.+.|+-.+|.
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 44788999999987543 235678888888888999999999999887764 555 568999999999999999999
Q ss_pred HHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 047393 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (373)
..+++..+- + .-+...|...+....+.|.+++|.+.+.++.
T Consensus 574 ~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 574 RKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 999998553 4 4566678888888889999999999988854
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=0.0061 Score=61.98 Aligned_cols=199 Identities=10% Similarity=-0.011 Sum_probs=100.6
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCH-------------------HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc
Q 047393 20 ACIKAKDYEMVHELLERIQLCCGFIDS-------------------YSICDILNSCLNPILLNVGTQAQAYMTKRGLISH 80 (373)
Q Consensus 20 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 80 (373)
.+.+.++..++..+ .+... ...+. ..+-.+..+|-+.|+.++|..+++++++.. +-|
T Consensus 74 l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n 149 (906)
T PRK14720 74 LSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDN 149 (906)
T ss_pred HHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-ccc
Confidence 56677777776666 33322 22232 344455555666666666766776666665 455
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 160 (373)
+.+.|.+...|+.. ++++|.+++.+. +..|...+++.++.++|.++.... |+
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~--~~-------------- 201 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHYN--SD-------------- 201 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhcC--cc--------------
Confidence 66666666666666 666666655543 222444555555666555555431 22
Q ss_pred CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH------------
Q 047393 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSR------------ 227 (373)
Q Consensus 161 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~------------ 227 (373)
+.+.-.++.+.+....|..--+.++--+...|-..++++++..++..+++..| |.....-++.+|.
T Consensus 202 -d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 202 -DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred -cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHH
Confidence 11122222222222112222223333344444555555555555555444333 2233333343332
Q ss_pred -------Hc-CCHHHHHHHHHHHhccCCCCcc
Q 047393 228 -------VH-GDMKLAKYALDKLLELDPGMYV 251 (373)
Q Consensus 228 -------~~-g~~~~A~~~~~~m~~~~P~~y~ 251 (373)
.. ..+..|..-|+.....+|.+|+
T Consensus 281 l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 281 LKMSDIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred HHHhccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 11 2345666667777777777755
No 133
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00046 Score=64.28 Aligned_cols=118 Identities=9% Similarity=0.019 Sum_probs=71.9
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047393 78 ISHPAVGNCLININSRCGKIDDADLAFKSTPE-K-----NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151 (373)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 151 (373)
+.+......+++......+++++..++.+... | -..|..++|..|.+.|..++++++++.=..-|+-||..|+|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555555666666666666666666655542 1 23344567777777777777777776666677777777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 196 (373)
.+|+.+.+.|++..|.++...|..+ +...+..|+.--+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 7777777777777777776666544 4444444544444444433
No 134
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.013 Score=52.32 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=70.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHH-HHHHHHHhcCCHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHc
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS-IMVEALGRAGMFEEVLEFIKGIVPGKLCPL-IWRTLLLSSRVH 229 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~ 229 (373)
.+..+++..|+..+|+++|-++. .-.+ .|..+|. .|..+|.++++++.|.+++-+ +....+.. ....+.+-|.+.
T Consensus 398 N~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk-~~t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLK-TNTPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHh-cCCchhHHHHHHHHHHHHHHH
Confidence 45567778899999999998773 2122 3455665 456888999999999999988 66222333 444555688899
Q ss_pred CCHHHHHHHHHHHhccCCCC
Q 047393 230 GDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 230 g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.+--|.+.|+++...+|+.
T Consensus 475 ~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHhhhHHHccCCCc
Confidence 99999999999999999877
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0036 Score=53.63 Aligned_cols=166 Identities=12% Similarity=0.038 Sum_probs=113.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC-Ch
Q 047393 34 LERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK-NS 112 (373)
Q Consensus 34 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-d~ 112 (373)
.+.+......-+......-...|+..+++++|.+.... | -+....-.=+..+.|..+++-|.+.++.|.+- +.
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----G--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 33344433333433333344568899999999988765 2 22333333344567778899999999999975 34
Q ss_pred hHHHHHHHHH----HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHH
Q 047393 113 LSWTFIISAR----VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188 (373)
Q Consensus 113 ~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 188 (373)
.|.+-|..++ .-.+...+|.-+|++|-++ .+|+..+.+....++...|++++|..++++...+. .-++.+...
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHH
Confidence 5555455554 4456789999999999765 68999999999999999999999999999997653 345555555
Q ss_pred HHHHHHhcCCHHH-HHHHHHh
Q 047393 189 MVEALGRAGMFEE-VLEFIKG 208 (373)
Q Consensus 189 li~~~~~~g~~~~-A~~~~~~ 208 (373)
+|-.-.-.|...+ ..+.+..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHH
Confidence 5555555555433 3445555
No 136
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.70 E-value=0.013 Score=61.43 Aligned_cols=226 Identities=12% Similarity=-0.019 Sum_probs=147.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHcCCCchHHHHHHHHHHHHcCC---CCc--hhHHHHHHH
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFIDS----YSICDILNSCLNPILLNVGTQAQAYMTKRGL---ISH--PAVGNCLIN 89 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~~~~~~li~ 89 (373)
..+...|++++|...+++....--..+. ...+.+...+...|++++|...+++.....- .+. ..+...+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3456789999999999987763111121 2345555667789999999999988764311 111 234556667
Q ss_pred HhHhcCCHHHHHHHHccCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPE-------K----NSLSWTFIISARVNHGHPSEALDLFKDKQWR--YTSMN--PTTFRSAL 154 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll 154 (373)
.+...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ..++..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 78889999999998875431 1 1233445556677789999999999887543 11222 33444556
Q ss_pred HHHHccCCHHHHHHHHHHhHHHcCCCCCHhHH-----HHHHHHHHhcCCHHHHHHHHHhhCCCCC-CH----HHHHHHHH
Q 047393 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY-----SIMVEALGRAGMFEEVLEFIKGIVPGKL-CP----LIWRTLLL 224 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~----~~~~~li~ 224 (373)
..+...|+.++|...+++......-......+ ...+..+...|+.+.|.+++.......+ .. ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67788999999999998874421111111111 1123445568999999999877333111 11 12456677
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q 047393 225 SSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~ 244 (373)
++...|+.++|...+++...
T Consensus 700 ~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 78899999999999998876
No 137
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0054 Score=55.74 Aligned_cols=202 Identities=11% Similarity=-0.052 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHcC--CCchHHHHHHHHHHH-HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHH---HH
Q 047393 44 IDSYSICDILNSCLN--PILLNVGTQAQAYMT-KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW---TF 117 (373)
Q Consensus 44 p~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~---~~ 117 (373)
|...+....+.++++ .++...|.+.+-.+. ..-++-|+.....+.+.+...|+.++|+..|++...-|+.+- ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333344444444432 344444444444442 334566788889999999999999999999997765443332 22
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhc
Q 047393 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRA 196 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~ 196 (373)
..-.+.+.|+.++...+...+.... .-...-|..-....-...+++.|+.+-+..++. .| +...+-.=...+...
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~---~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS---EPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc---CcccchHHHhccHHHHhc
Confidence 2334567888888888777775431 112222222233334567777777777665432 33 223332223566778
Q ss_pred CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 197 GMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 197 g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
|+.++|.--|+.+....| +..+|..|+.+|...|+..+|.-.-......-|++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 888888888888666676 67889999999999999888887777766644443
No 138
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.00091 Score=62.36 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=99.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC----CCChhH
Q 047393 41 CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR--GLISHPAVGNCLININSRCGKIDDADLAFKSTP----EKNSLS 114 (373)
Q Consensus 41 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~ 114 (373)
+.+.+......+++.+....+++++..++-..... ....-..|..++|..|.+.|..++++++++.=. =||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45567778888999999989999999998888665 222334566799999999999999999997644 379999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 160 (373)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998888788888888777777665
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0089 Score=52.11 Aligned_cols=160 Identities=11% Similarity=-0.006 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH-HHHh
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL-ININ 91 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~ 91 (373)
|++++..+.+..+++.|++++..-.++ .| +....+.|..+|-...++..|-..++++-.. .|...-|..- ...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 455555566666667776666555443 23 4445555555666666666666666655332 1222211100 1112
Q ss_pred HhcCCHHHH----------------------------------HHHHccCC-CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 047393 92 SRCGKIDDA----------------------------------DLAFKSTP-EKNSLSWTFIISARVNHGHPSEALDLFK 136 (373)
Q Consensus 92 ~~~g~~~~A----------------------------------~~~~~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~ 136 (373)
.+.+.+.+| ..+.++.+ +.+..+-+.......+.|++++|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 223333333 33333333 2233333333334457788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC
Q 047393 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179 (373)
Q Consensus 137 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~ 179 (373)
...+-+--.....|+..+.-| +.|+.+.|.++..++.++ |+
T Consensus 169 aAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieR-G~ 209 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIER-GI 209 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHh-hh
Confidence 876654344556777666554 467788888888887665 44
No 140
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.0052 Score=54.95 Aligned_cols=205 Identities=15% Similarity=0.089 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHH---HHcCCCCc--hhHHHHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM---TKRGLISH--PAVGNCL 87 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m---~~~g~~~~--~~~~~~l 87 (373)
.|+.....|-..|++++|.+.|.+... .+.+.++...|-..+..+ .+.+ .|+ +..|...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~---------------~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAAD---------------CYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHH---------------HHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHH---------------HHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH
Confidence 456666666666666666666665543 222222222222222221 0111 111 2334445
Q ss_pred HHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhC-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcc
Q 047393 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH-GHPSEALDLFKDKQWR----YTSMN--PTTFRSALKAYALM 160 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~~~~~~ 160 (373)
+..|.+.|++..|-+++ ..+...|... |++++|++.|++..+. | .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 55666666666665533 3455666666 7888888888776432 2 111 24556677778888
Q ss_pred CCHHHHHHHHHHhHHHcCCC-----CCHh-HHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHH
Q 047393 161 GLVGEAYRLFLSMEEVYHIE-----PSEE-HYSIMVEALGRAGMFEEVLEFIKGIVPGKLC------PLIWRTLLLSSRV 228 (373)
Q Consensus 161 g~~~~a~~~~~~m~~~~g~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~li~~~~~ 228 (373)
|++++|.++|++.... ... .+.. .+-..+-.+...|+...|.+.|++.....|. ......||.++-.
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 8999999999887543 111 1222 2333444556678888888888885544441 2566677777743
Q ss_pred --cCCHHHHHHHHHHHhccC
Q 047393 229 --HGDMKLAKYALDKLLELD 246 (373)
Q Consensus 229 --~g~~~~A~~~~~~m~~~~ 246 (373)
...++.+..-|+.+.+++
T Consensus 248 ~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---
T ss_pred CCHHHHHHHHHHHcccCccH
Confidence 335666666666666655
No 141
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.63 E-value=0.0032 Score=61.08 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=57.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 203 (373)
....|.+|+.+++.++..+ .-..-|..+.+-|+..|+++.|+++|.+. + .++-.|++|.++|++++|.
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----~------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----D------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----c------hhHHHHHHHhccccHHHHH
Confidence 3445666666666555542 22334555566666667777776666543 1 2344566677777777776
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047393 204 EFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239 (373)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 239 (373)
++-++.+.-......|-+-..-+-.+|++.+|+++|
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 666663332223345555555555566655555543
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.0015 Score=49.67 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYT--SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMV 190 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li 190 (373)
++..+...+.+.|++++|.+.|+.+.+..- ......+..+...+.+.|+++.|...|+.+...+.-.| ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666777777777777777765421 11134555566677777777777777777655421111 134556666
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.++.+.|+.++|.+.+++++...|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 6777777777777777775554443
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00075 Score=62.39 Aligned_cols=101 Identities=13% Similarity=0.020 Sum_probs=68.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcC
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAG 197 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g 197 (373)
.......|++++|++.|++..+.. +-+...|..+..+|.+.|++++|...+++..+. .| +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhC
Confidence 344556777888888887777653 335566777777777778888887777777543 33 5566777777777777
Q ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047393 198 MFEEVLEFIKGIVPGKLCPLIWRTLL 223 (373)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~li 223 (373)
++++|...|++++...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 87777777777666666544433333
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.00025 Score=47.80 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 189 MVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+...+.+.|++++|.+.|+++++..| ++..|..+..++...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34567788999999999998777777 56788888888999999999999999998888864
No 145
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.58 E-value=0.034 Score=53.47 Aligned_cols=224 Identities=13% Similarity=-0.012 Sum_probs=157.3
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH
Q 047393 21 CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 100 (373)
+...|+-++|.+..+.-.+.. .-+.+.|.++.-.+....+.++|.+.|....+.+ +-|...+.-|--.=++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 345678889988777666532 3356778877777778889999999999998876 55677777666666677777776
Q ss_pred HHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHccCCHHHHHHHH
Q 047393 101 DLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTFRSAL------KAYALMGLVGEAYRLF 170 (373)
Q Consensus 101 ~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll------~~~~~~g~~~~a~~~~ 170 (373)
...-....+ .....|..+..++--.|+...|..++++..+.. -.|+...|.-.. ....++|.+++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 665554443 356789999999999999999999999987764 356666554332 2345788899998888
Q ss_pred HHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHHcCCHHHHH-HHHHHHhccCCC
Q 047393 171 LSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL-LSSRVHGDMKLAK-YALDKLLELDPG 248 (373)
Q Consensus 171 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~~P~ 248 (373)
..-... +.-....-..-.+.+.+.+++++|..++...+...||..-|+-.+ .++.+-.+.-++. .+|....+.-|.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 776332 233333444566788899999999999999777788876666555 4554333333444 667766664443
No 146
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.022 Score=57.42 Aligned_cols=88 Identities=17% Similarity=0.323 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 190 (373)
....|+.+..+-.+.|...+|++-|-+. -|...|..+++...+.|.+++-.+++...+++ .-.|.+. +.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3567999999999999999998877542 37889999999999999999999999988665 5566554 5799
Q ss_pred HHHHhcCCHHHHHHHHH
Q 047393 191 EALGRAGMFEEVLEFIK 207 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~ 207 (373)
-+|++.+++.+-++++.
T Consensus 1174 ~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHHHHhchHHHHHHHhc
Confidence 99999999998877664
No 147
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.58 E-value=0.0051 Score=58.90 Aligned_cols=174 Identities=7% Similarity=-0.011 Sum_probs=119.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHH
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKR-GLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSE 130 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~ 130 (373)
-+..+.+.+++......|+..+.. -+.....+|...+......|-++-+..++++..+-++..-+-.|..+++.+++++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHH
Confidence 334445667777777777776543 2233345777777777778888888999988887777777888888899999999
Q ss_pred HHHHHHHHHHc------CCCCCHHHHHHHHHHHHccCCHHHHH---HHHHHhHHHcCCCCCH--hHHHHHHHHHHhcCCH
Q 047393 131 ALDLFKDKQWR------YTSMNPTTFRSALKAYALMGLVGEAY---RLFLSMEEVYHIEPSE--EHYSIMVEALGRAGMF 199 (373)
Q Consensus 131 A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~---~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~ 199 (373)
|-+.+...... .-+.+...|.-+.+..++.-+.-... .+++.+. +.-+|. ..|++|.+-|.+.|.+
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---RRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---ccCcHHHHHHHHHHHHHHHHhhhh
Confidence 98888776532 22456677777777666655443333 3333332 234554 6788999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 047393 200 EEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228 (373)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 228 (373)
++|..+|++.|...-.+.-|..+.++|+.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 99999998877634445555555555543
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00017 Score=49.29 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=54.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 047393 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHG-DMKLAKYALDKLLELDP 247 (373)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~P 247 (373)
+..+|..+...+...|++++|+..|++++...| ++..|..+..++...| ++++|.+.+++.++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345677788888888999999999888887667 4678888888888888 68999999988888776
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0056 Score=59.32 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=99.7
Q ss_pred CChhHHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHhHH
Q 047393 110 KNSLSWTFIISARVNHG-----HPSEALDLFKDKQWRYTSMNP-TTFRSALKAYALM--------GLVGEAYRLFLSMEE 175 (373)
Q Consensus 110 ~d~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~--------g~~~~a~~~~~~m~~ 175 (373)
.|...|...+.+..... ....|.++|++..+. .|+- ..|..+..++... +++..+.+..+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 47788999888765432 266899999999886 5653 4444433333221 123334444443322
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 176 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
....+.+...|.++.-.....|++++|...+++++...|+...|..+...+...|+.++|...+++...++|..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 11123455778877777777899999999999998889999999999999999999999999999999999876
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=0.00039 Score=49.70 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDMKLAKYA 238 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 238 (373)
.|+++.|..+++.+.+.....|+...+-.+..+|.+.|++++|.+++++ .+..|.. .....+..++.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3555666666666554421111233333455666666666666666655 4333322 3333444555666666666665
Q ss_pred HHH
Q 047393 239 LDK 241 (373)
Q Consensus 239 ~~~ 241 (373)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 553
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.0026 Score=52.33 Aligned_cols=128 Identities=11% Similarity=-0.026 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFID--SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
.|..+...+...|++++|.+.|++..+....+. ...+..+...+.+.|++++|...+....+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555555666666666665554322221 2345555555555566666666555555432 2233344444444
Q ss_pred hHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
|...|+...+..-++.. ...+++|.+.+++.... .|+ .|..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 55444433332211110 01145666666666553 233 36666666655554
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0046 Score=50.83 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSI 188 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~ 188 (373)
...|..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34455555556666666666666666554332221 245555556666666666666666665432 23 3344444
Q ss_pred HHHHHHhcCCHH
Q 047393 189 MVEALGRAGMFE 200 (373)
Q Consensus 189 li~~~~~~g~~~ 200 (373)
+...+...|+..
T Consensus 112 lg~~~~~~g~~~ 123 (172)
T PRK02603 112 IAVIYHKRGEKA 123 (172)
T ss_pred HHHHHHHcCChH
Confidence 555555555533
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.49 E-value=0.037 Score=55.14 Aligned_cols=224 Identities=12% Similarity=0.020 Sum_probs=151.0
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH--cCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047393 21 CIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSC--LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 98 (373)
....+++.+|++...++.+. .|+.. |..++.++ .|.|..++|..+++.....+.. |..|...+-.+|.+.|+++
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 45678899999999888764 35543 44455554 5889999999888887665543 7889999999999999999
Q ss_pred HHHHHHccCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------CHHHH
Q 047393 99 DADLAFKSTPE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG----------LVGEA 166 (373)
Q Consensus 99 ~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----------~~~~a 166 (373)
+|..++++..+ |+..-...+..+|.+.+.+.+-.+.--+|.+ ..+-+...|-++++...+.- -+.-|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999998875 4544555566778887776654333333333 23445666667776655432 13356
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP-G--KLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
.+.++.+.++.|---+..-.......+-..|+.++|.+++..-.. . .-+...-+.-++-+...+++.+-.++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 677777766543111222223334455667889999999843122 1 2244555667777888889999888888888
Q ss_pred ccCCCC
Q 047393 244 ELDPGM 249 (373)
Q Consensus 244 ~~~P~~ 249 (373)
..+||+
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 888776
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0027 Score=58.72 Aligned_cols=95 Identities=9% Similarity=-0.033 Sum_probs=73.6
Q ss_pred HHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047393 88 ININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 164 (373)
...+.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3456677899999999987763 356778888888899999999999999888763 345677888888888999999
Q ss_pred HHHHHHHHhHHHcCCCCCHhHH
Q 047393 165 EAYRLFLSMEEVYHIEPSEEHY 186 (373)
Q Consensus 165 ~a~~~~~~m~~~~g~~p~~~~~ 186 (373)
+|...|++..+. .|+....
T Consensus 88 eA~~~~~~al~l---~P~~~~~ 106 (356)
T PLN03088 88 TAKAALEKGASL---APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHh---CCCCHHH
Confidence 999999888653 5554333
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.07 Score=46.47 Aligned_cols=168 Identities=10% Similarity=0.018 Sum_probs=81.9
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCCchhHH---HHHHHHhHhcCCHHHHHHHHccCCC--C--ChhHHHHHHHHHHh--
Q 047393 54 NSCLNPILLNVGTQAQAYMTKRGLISHPAVG---NCLININSRCGKIDDADLAFKSTPE--K--NSLSWTFIISARVN-- 124 (373)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~--~--d~~~~~~li~~~~~-- 124 (373)
..+.+.|++++|.+.|+.+...-.. +.... -.+..+|.+.+++++|...|++..+ | ..+.|-..+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 3345567777887777777664321 12222 2345667777788887777776652 2 12233333333221
Q ss_pred CC---------------C---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHH
Q 047393 125 HG---------------H---PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186 (373)
Q Consensus 125 ~g---------------~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 186 (373)
.+ + ..+|++.|+++.+. |=.+.-..+|...+..+.... -. .-
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~l----a~-~e 178 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRL----AK-YE 178 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHH----HH-HH
Confidence 11 1 12344444444433 223333344444333332210 00 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVPGKL----CPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
-.+...|.+.|.+..|..=|+.++..-| .......++.+|...|..++|......+
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1344556666666666555555443233 2345556666666666666666655443
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.0022 Score=55.85 Aligned_cols=94 Identities=19% Similarity=0.160 Sum_probs=45.8
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHH
Q 047393 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 122 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~ 200 (373)
..+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|..+.|.+=.+.... +.| -..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence 334455555555555555431 23444444555555555555555544443321 233 2345555555555555555
Q ss_pred HHHHHHHhhCCCCCCHHHH
Q 047393 201 EVLEFIKGIVPGKLCPLIW 219 (373)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~ 219 (373)
+|.+.|.+++.+.|+-.+|
T Consensus 167 ~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHhhhccCCCcHHH
Confidence 5555555555555544433
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0036 Score=55.88 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCC-GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
+|-.++...-+.+..+.|..+|.+..+.+ +..+.....+++. +.-.++.+.|.++|+...+. ++.+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555554321 1122222222221 11123444455555554433 233444444444444
Q ss_pred HhcCCHHHHHHHHccC
Q 047393 92 SRCGKIDDADLAFKST 107 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m 107 (373)
.+.|+.+.|..+|++.
T Consensus 81 ~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 81 IKLNDINNARALFERA 96 (280)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHH
Confidence 4445555544444443
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.37 E-value=0.0048 Score=50.50 Aligned_cols=89 Identities=10% Similarity=-0.107 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCC--chhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 047393 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLIS--HPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARV 123 (373)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~ 123 (373)
+..+...+...|++++|...+.........+ ...++..+...|.+.|++++|...+++... ....++..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 4444444444555555555555554332111 123445555555555555555555554331 12233333333333
Q ss_pred -------hCCChHHHHHHHHH
Q 047393 124 -------NHGHPSEALDLFKD 137 (373)
Q Consensus 124 -------~~g~~~~A~~l~~~ 137 (373)
..|++++|...+++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHH
Confidence 55666655444443
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.028 Score=50.25 Aligned_cols=118 Identities=23% Similarity=0.297 Sum_probs=76.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhHHHcCCCCC----HhHHHHH
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM-GLVGEAYRLFLSMEEVYHIEPS----EEHYSIM 189 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~g~~p~----~~~~~~l 189 (373)
|.-.+..|...|++..|-.++..+ ...|-.. |+++.|.+.|++..+-+.-... ..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 334556677777777766655554 4456666 8999999999887654322222 3456677
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCC-------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 190 VEALGRAGMFEEVLEFIKGIVPG-------KLCPL-IWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~~-------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
...+.+.|++++|.++|++.... +.+.. .|-..+-++...|+...|.+.+++..+.+|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88999999999999999985321 11222 333444466778999999999999998776
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.33 E-value=0.00043 Score=49.46 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=32.6
Q ss_pred cCCHhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 047393 24 AKDYEMVHELLERIQLCCG-FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102 (373)
Q Consensus 24 ~g~~~~A~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 102 (373)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455555555555554321 11222233344455555555555555544 11111 112222233444455555555554
Q ss_pred HHc
Q 047393 103 AFK 105 (373)
Q Consensus 103 ~~~ 105 (373)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.31 E-value=0.027 Score=53.05 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 047393 84 GNCLININSRCGKIDDADLAFKSTPE-----KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT-TFRSALKAY 157 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~ 157 (373)
|-.+++.-.|..-+..|..+|.+..+ .++..+++++.-||. ++.+-|..+|+-=.+. -+|.. --...++.+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHH
Confidence 33344444444444455555544432 134444444444442 3344444444432222 11222 222334444
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPS--EEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
...++-..|..+|++.... +++|| ...|..+|+-=..-|++..+.++-++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4444445555555554433 33332 24455555544445555555544444
No 162
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.019 Score=56.68 Aligned_cols=211 Identities=10% Similarity=0.056 Sum_probs=127.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-C--------CCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLC-C--------GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLIS 79 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 79 (373)
.+-+.|..|.+.|++..+++-|.-.+-.|... | -.|+ .+=..+.-.....|.+++|+.+|.+-++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 35577999999999988888777666666432 1 1232 11111222234668889999888876653
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHH----------HcC------
Q 047393 80 HPAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHGHPSEALDLFKDKQ----------WRY------ 142 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~----------~~g------ 142 (373)
..|=..|-..|.+++|.++-+.=.. .=-.||.--..-+-..++.+.|++.|++-. ...
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3344567778888888887653221 112455555555555666666666665421 110
Q ss_pred ---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHH
Q 047393 143 ---TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219 (373)
Q Consensus 143 ---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 219 (373)
-.-|...|.---...-..|+.+.|+.+|... ++ |-+++...|-.|+.++|-++-++ .-|....
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAc 970 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-KD---------YFSMVRIKCIQGKTDKAARIAEE----SGDKAAC 970 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-hh---------hhhheeeEeeccCchHHHHHHHh----cccHHHH
Confidence 0113333333333344578888888888776 32 44566666667777777777766 4466666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 220 RTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 220 ~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
..|.+-|-..|++.+|..+|-+..
T Consensus 971 YhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 971 YHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666777777777777777766554
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0054 Score=50.17 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSM--NPTTFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
..|..+...+...|++++|+..|++.......| ...++..+-..+.+.|+.++|...++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555666666666666654432111 12355555555666666666666665554
No 164
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0024 Score=56.82 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=127.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH-Hc----CCCchHHHHHHHHHHHHcCCCCchhH-HHHHHHHhH
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNS-CL----NPILLNVGTQAQAYMTKRGLISHPAV-GNCLININS 92 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~-~~----~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~ 92 (373)
--|.+.+++.+|..+.+++.- ..|-.+..-.+..+ ++ ....+.-|.+.|+..-.++...|+.- -.++...+.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred eeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 336789999999888666532 23333333333322 22 22345667788877766666655432 234555556
Q ss_pred hcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHH
Q 047393 93 RCGKIDDADLAFKSTPE----KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS-ALKAYALMGLVGEAY 167 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~ 167 (373)
-.-++|+.+-.++.+.. .|...|| +..+++..|++.+|+++|-+.....++ |..+|.+ +.++|.+.+.++.|+
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence 66678888887777663 3444444 788999999999999999776544333 5667765 556788999999999
Q ss_pred HHHHHhHHHcCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHH
Q 047393 168 RLFLSMEEVYHIEPSEEHYSIMV-EALGRAGMFEEVLEFIKGIVP-GKLCPLIWRT 221 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~ 221 (373)
+++-.+ .-+.+..+.-.+| .-|-+++.+--|-+-|+. ++ ..|++.-|..
T Consensus 449 ~~~lk~----~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~-lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 449 DMMLKT----NTPSERFSLLQLIANDCYKANEFYYAAKAFDE-LEILDPTPENWEG 499 (557)
T ss_pred HHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHccCCCccccCC
Confidence 888665 2234444444444 566688888888888887 54 7888887754
No 165
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.016 Score=49.63 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=117.9
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCCCC--C--------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047393 84 GNCLININSRCGKIDDADLAFKSTPEK--N--------SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~--d--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 153 (373)
+++|+..+.-...+++-...|+.-..| . ....++++..+.-.|.+.-....+++..+...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 344444444444444444444433322 2 233456666677778888888999999988767788888899
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH-----HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV-----EALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSR 227 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 227 (373)
.+.-.+.|+.+.|..+|+...+..| ..|..+.+.++ ..|.-.+++.+|...|++.+..+| |+..-|.-.-++.
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 9999999999999999998866533 44444554444 345557889999999998555444 6666676666677
Q ss_pred HcCCHHHHHHHHHHHhccCCCCc
Q 047393 228 VHGDMKLAKYALDKLLELDPGMY 250 (373)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~P~~y 250 (373)
-.|+...|.+.++.|.+..|..+
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccc
Confidence 79999999999999999988763
No 166
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.034 Score=52.31 Aligned_cols=224 Identities=16% Similarity=0.022 Sum_probs=141.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH-------
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC------- 86 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~------- 86 (373)
.-.+.++.-+..+++.|++-+....+.. -+..-++..-.++...|...+....-...++.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4455666667777888888887777643 23333455555667777777766666665555532 1222222
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHH
Q 047393 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT-TFRSALKAYALMGLVGE 165 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~ 165 (373)
+..+|.+.++++.|...|.+...+-.. =....+....+++....+...-. .|... -.-.--+.+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHH
Confidence 223555667777777777664321000 00111222233333333332222 23221 11112455678899999
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
|...|.++++.. +-|...|..-.-+|.+.|.+..|+.=.+..++..|+ ...|..=..++.-..++++|.+.|.+..+
T Consensus 377 Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997762 557899999999999999999999988877776665 35666666777778899999999999999
Q ss_pred cCCCC
Q 047393 245 LDPGM 249 (373)
Q Consensus 245 ~~P~~ 249 (373)
.+|++
T Consensus 455 ~dp~~ 459 (539)
T KOG0548|consen 455 LDPSN 459 (539)
T ss_pred cCchh
Confidence 99887
No 167
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.089 Score=53.37 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
...|+.+..+-.+.|.+.+|.+-|-+. -|+..|..++..+.+.|.+++-.+.+....+..-+|.+. +.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 457999999999999999998876443 367789999999999999999999888777776666544 578999
Q ss_pred hHhcCCHHHHHHHHccCCC-----------------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 047393 91 NSRCGKIDDADLAFKSTPE-----------------------KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~-----------------------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 147 (373)
|++.+++.+-++++..-.. .++..|.-|...+...|.+..|.+.-++ .-+.
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ 1249 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARK------ANST 1249 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------ccch
Confidence 9999999987776532110 1455567777777777888777654433 2367
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 047393 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVYHI--EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLL 224 (373)
Q Consensus 148 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~ 224 (373)
.||-.+-.+|...+.+.-| +| .|+ .....-..-++..|-..|-+++-..+++..+..+. ....|+-|.-
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----Qi---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QI---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAI 1321 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----Hh---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 7888888888777665544 22 233 23344455677777778888877777776544222 3344444444
Q ss_pred HHHH
Q 047393 225 SSRV 228 (373)
Q Consensus 225 ~~~~ 228 (373)
.|.+
T Consensus 1322 LYsk 1325 (1666)
T KOG0985|consen 1322 LYSK 1325 (1666)
T ss_pred HHHh
Confidence 4443
No 168
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.034 Score=52.89 Aligned_cols=176 Identities=14% Similarity=0.036 Sum_probs=116.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHH--HHHHHH--hCCC
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTF--IISARV--NHGH 127 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~--li~~~~--~~g~ 127 (373)
=++-+...+++++|.+....++..+ +-+...+.+=+-++.+.+++++|+++.+.-...+ +++. +=.+|| +.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc
Confidence 3455678899999999999998876 5667778888888999999999998776544221 2222 244554 7899
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCC-CCHhHHHHHHHHHHhcCCHHHHHHH
Q 047393 128 PSEALDLFKDKQWRYTSMNP-TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE-PSEEHYSIMVEALGRAGMFEEVLEF 205 (373)
Q Consensus 128 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~ 205 (373)
.++|+..++ |..++. .+...-...+-+.|++++|.++|+.+.+. +.+ -+...-..++.+- ....+. +
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~----a~l~~~-~ 163 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVA----AALQVQ-L 163 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHH----HhhhHH-H
Confidence 999999887 344433 35555567788999999999999999553 221 1223333333221 111222 4
Q ss_pred HHhhCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHh
Q 047393 206 IKGIVPGKLCPLIWRTLL---LSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 206 ~~~~~~~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~m~ 243 (373)
.+. .+..| ..+|..+. -.+...|++.+|+++++...
T Consensus 164 ~q~-v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 164 LQS-VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HHh-ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 555 55455 23444443 34567899999999999983
No 169
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.24 E-value=0.043 Score=51.78 Aligned_cols=182 Identities=11% Similarity=0.045 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHh---HhcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 63 NVGTQAQAYMTKRGLISHPAVGNCLININ---SRCGKIDDADLAFKSTPE----KNSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 63 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
+++.++++..+..-...+..+|.++.+.= .+..+.+.....+++... .-..+|-.+++.-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555554433233444444433211 011123334444444432 23467888888888888899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC--
Q 047393 136 KDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG-- 212 (373)
Q Consensus 136 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 212 (373)
.+..+.+..+ +...+++++..+| +++.+-|.++|+-=.+.+| -++......++-+...++-..|..+|++.++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 7788889998888 5788999999998767653 34455668889999999999999999997663
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 213 KLC--PLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 213 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
.|+ ...|..+|.-=..-|+...+.++-+++...-|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 333 47999999999999999999999998887544
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.23 E-value=0.015 Score=46.24 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=65.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVH 229 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 229 (373)
.+-..+...|++++|..+|+.+..- .| +..-|-.|--++-..|++++|...|..+....| |+..+-.+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3344456678888888888877532 44 445566677777778888888888887666666 567777778888888
Q ss_pred CCHHHHHHHHHHHhcc
Q 047393 230 GDMKLAKYALDKLLEL 245 (373)
Q Consensus 230 g~~~~A~~~~~~m~~~ 245 (373)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888877763
No 171
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.026 Score=49.31 Aligned_cols=84 Identities=11% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCC
Q 047393 121 ARVNHGHPSEALDLFKDKQWR-YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGM 198 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~ 198 (373)
.+.+.|+++.|.+-+-.|--+ ....|++|...+.-. --.+++.+...-++-+... .| -..||..++-.||++.-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~---nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ---NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc---CCCChHHHHHHHHHHhhhHH
Confidence 344555555555555555211 123344444433211 1123333333333333222 22 23455555666666666
Q ss_pred HHHHHHHHHh
Q 047393 199 FEEVLEFIKG 208 (373)
Q Consensus 199 ~~~A~~~~~~ 208 (373)
++-|-.++.+
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 6666665555
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.0018 Score=43.96 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (373)
+.|++++|..+|+.+.... +-+...+..+..+|.+.|++++|.++++++....|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3456666666666654431 224555555666666666666666666664344555444433
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.019 Score=43.83 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=75.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHH
Q 047393 118 IISARVNHGHPSEALDLFKDKQWRYTSMN--PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALG 194 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~ 194 (373)
+..++-..|+.++|+.+|++....|.... ...+..+-+.+...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567788999999999999999887655 34667778888999999999999999876531111 2223333445777
Q ss_pred hcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047393 195 RAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227 (373)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~ 227 (373)
..|+.++|.+.+-..+. ++...|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la--~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA--ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 88999999998876332 34445555555554
No 174
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.17 E-value=0.12 Score=51.57 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=131.3
Q ss_pred HHHHHHHHH--HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 13 PWNLLLKAC--IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 13 ~~n~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
.|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..+|++..+. -|+......+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFma 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHH
Confidence 455566665 4789999999888877665443 7889999999999999999999999998765 4777777778888
Q ss_pred hHhcCCHHH----HHHHHccCCCCChhHHHHHHHHHHhC-CCh---------HHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 047393 91 NSRCGKIDD----ADLAFKSTPEKNSLSWTFIISARVNH-GHP---------SEALDLFKDKQWRY-TSMNPTTFRSALK 155 (373)
Q Consensus 91 ~~~~g~~~~----A~~~~~~m~~~d~~~~~~li~~~~~~-g~~---------~~A~~l~~~m~~~g-~~p~~~t~~~ll~ 155 (373)
|.|.+.+.+ |.++++..++.--..|++ ++.+.+. ... --|...++.+.+.+ -.-+..-.-.-+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 999887654 677788766555555543 3333221 111 23455556655543 1112222222233
Q ss_pred HHHccCCHHHHHHHHH-HhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 156 AYALMGLVGEAYRLFL-SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~-~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
.....|.+++|..++. ...+. -..-+...-+--++.+...+++.+..++-.+++...+|.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 4456888999999994 33232 122244455566788888899988888777755545553
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.09 E-value=0.0078 Score=52.54 Aligned_cols=105 Identities=20% Similarity=0.140 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
+...+-++++..| +-..+.+++++|...|.+.++ +.| |.+.|..=..+|.+.|..+.|.+=.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4555566676665 345678999999999999864 455 667777778999999999999999999
Q ss_pred hCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 209 IVPGKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 209 ~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
++.+.|.. .+|..|-.+|...|++++|.+.|++.++++|++
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 88888864 699999999999999999999999999999999
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.07 E-value=0.012 Score=51.78 Aligned_cols=103 Identities=13% Similarity=0.077 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHH
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC----PLIWRT 221 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ 221 (373)
...|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.++...|+ +..+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34566666555667899999999998877642111 1245667788888899999999999886654453 456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 222 LLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+...+...|+.++|...|+.+++..|+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 6777888999999999999999877765
No 177
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.07 E-value=0.01 Score=45.83 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh
Q 047393 142 YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195 (373)
Q Consensus 142 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 195 (373)
...|+..+..+++.+|+..|++..|.++.+...+.++++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356778888888888888888888888888887888877777777777764443
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0019 Score=44.58 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..|.+.+++++|.+++++++...| ++..|......+.+.|++++|...++...+..|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 456677777777777777666666 45566667777777777777777777777776654
No 179
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.05 E-value=0.023 Score=57.20 Aligned_cols=176 Identities=13% Similarity=0.029 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 047393 62 LNVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKD 137 (373)
Q Consensus 62 ~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~ 137 (373)
...|...|-+..+ +.|+ ...|..|...|+...+...|.+.|+..-+ .|..++......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4444444444433 3344 45788889999988889999999986654 4678889999999999999999988322
Q ss_pred HHHcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 138 KQWRYTSMNPTTFRS--ALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 138 m~~~g~~p~~~t~~~--ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
.-+. -+.-...++. .--.|.+.++...|..-|+...+ +.| |...|..+.++|.++|++..|.++|.++...+|
T Consensus 552 ~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 552 AAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred Hhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 2211 1111222222 23346778899999999987754 355 788999999999999999999999999555666
Q ss_pred CHHHHHHHH--HHHHHcCCHHHHHHHHHHHhc
Q 047393 215 CPLIWRTLL--LSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 215 ~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+.. |...- ...+..|.+++|...+..++.
T Consensus 628 ~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LSK-YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 542 22222 234668888999888887765
No 180
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.19 Score=45.58 Aligned_cols=100 Identities=23% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM 198 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 198 (373)
|.-+...|+...|.++-.+.. .||..-|-..+.+++..++|++-.++-.. .-.+.-|..+++++.+.|+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCCC
Confidence 444444555555544443332 34555555555555555555544443211 1122344455555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047393 199 FEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237 (373)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 237 (373)
..+|..++.+ ++ +..-+..|.+.|++.+|.+
T Consensus 253 ~~eA~~yI~k-~~-------~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 253 KKEASKYIPK-IP-------DEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HHHHHHHHHh-CC-------hHHHHHHHHHCCCHHHHHH
Confidence 5555555555 32 1233444445555555444
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.043 Score=43.73 Aligned_cols=89 Identities=9% Similarity=-0.086 Sum_probs=39.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc
Q 047393 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196 (373)
Q Consensus 117 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 196 (373)
.+..-+...|++++|..+|+-...-. +-+..-|..|--.+-..|++++|...|.....- . +-|+..+-.+-.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHHHHHHHc
Confidence 33334444555555555555444331 112223333333444445555555555544221 1 12344444455555555
Q ss_pred CCHHHHHHHHHh
Q 047393 197 GMFEEVLEFIKG 208 (373)
Q Consensus 197 g~~~~A~~~~~~ 208 (373)
|+.+.|.+-|+.
T Consensus 117 G~~~~A~~aF~~ 128 (157)
T PRK15363 117 DNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHH
Confidence 555555555554
No 182
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.00 E-value=0.012 Score=59.02 Aligned_cols=152 Identities=13% Similarity=0.024 Sum_probs=117.3
Q ss_pred CHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 047393 96 KIDDADLAFKSTPEKN---SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172 (373)
Q Consensus 96 ~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 172 (373)
+...|+..|=+-.+.| ...|..|...|+..-+...|...|++..+.. ..|........+.|+...+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3666666664433332 5689999999998888889999999887653 33566777888999999999999998444
Q ss_pred hHHHcCCCC-CHhH--HHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 173 MEEVYHIEP-SEEH--YSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 173 m~~~~g~~p-~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.-+. .| -... |...--.|.+.++...|..-|+.+++..| |...|..+..+|...|++..|.++|.++..++|.
T Consensus 552 ~~qk---a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 552 AAQK---APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred Hhhh---chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 3222 22 2222 22344456788999999999999898888 7789999999999999999999999999999999
Q ss_pred C-cc
Q 047393 249 M-YV 251 (373)
Q Consensus 249 ~-y~ 251 (373)
+ |.
T Consensus 629 s~y~ 632 (1238)
T KOG1127|consen 629 SKYG 632 (1238)
T ss_pred hHHH
Confidence 9 54
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.00 E-value=0.17 Score=42.71 Aligned_cols=182 Identities=15% Similarity=0.009 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCG-FI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
...-.....+.+.|++.+|.+.|+++...-. .| -....-.+..++-+.|+.+.|...+++.++.-......-+-..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3344455567789999999999999887521 11 223455677788888999999999998876532111122222222
Q ss_pred HhHhcCCHHHHHHHHccCCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 90 INSRCGKIDDADLAFKSTPEKN-------SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
+.+......... ...+| ...+..+|.-|=.+....+|...+..+.+. =...-..+...|.+.|.
T Consensus 86 g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 86 GLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccc
Confidence 222211111111 11122 234555666666666666665555444322 01111224555777777
Q ss_pred HHHHHHHHHHhHHHcCCCCC-HhHHHHHHHHHHhcCCHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPS-EEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A 202 (373)
+..|...++.+.+.+.-.+. ....-.++.+|-+.|..+.|
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777766422221 13334566666666666643
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.96 E-value=0.057 Score=52.43 Aligned_cols=73 Identities=12% Similarity=0.005 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 047393 146 NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221 (373)
Q Consensus 146 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (373)
+...|..+.-.....|++++|...+++...- .|+...|..+...+...|+.++|.+.+++++...|...+|..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 4456665544455568888888888877543 567777777788888888888888888877777776555443
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.93 E-value=0.005 Score=41.69 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=46.6
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHH
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 189 (373)
.+.|++++|+++|+++.+.. +-+......+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 46788889999998887763 336777778888889999999999999888655 5664444443
No 186
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.91 E-value=0.0093 Score=51.61 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=76.6
Q ss_pred CCCCC--CCChhHHHHHHHHHHHc-----CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC---------------
Q 047393 3 LCSLI--SDVEIPWNLLLKACIKA-----KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI--------------- 60 (373)
Q Consensus 3 f~~m~--~p~~~~~n~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--------------- 60 (373)
|...+ ++|-.+|-+.+..|... +.++=....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 57 F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP 136 (406)
T KOG3941|consen 57 FEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP 136 (406)
T ss_pred hhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc
Confidence 44444 68888999998888654 556666666788999999999999999999876653
Q ss_pred -chHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047393 61 -LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 61 -~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 97 (373)
+-+-+..++++|..+|+.||..+-..|++++.+.+..
T Consensus 137 ~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 137 QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3355789999999999999999999999999887753
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.81 E-value=0.033 Score=42.60 Aligned_cols=57 Identities=9% Similarity=-0.173 Sum_probs=33.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFID--SYSICDILNSCLNPILLNVGTQAQAYMTKR 75 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 75 (373)
.++-..|+.++|+.+|++....|+..+ ...+-.+.+++...|++++|..+++.....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445556666666666666666655433 223445555666666666666666665543
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.80 E-value=0.02 Score=50.35 Aligned_cols=103 Identities=10% Similarity=0.017 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP----TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYS 187 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~ 187 (373)
..|..-+..+.+.|++++|...|+.+.+. -|+. ..+-.+..+|...|++++|...|+.+.+.+.-.| ....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 44666666667789999999999999887 3443 5677788888999999999999999987643222 234444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCHH
Q 047393 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPL 217 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (373)
.+...+...|+.++|..+|++.++..|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 556677789999999999998666667543
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.78 E-value=0.17 Score=48.97 Aligned_cols=209 Identities=14% Similarity=0.083 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCC--HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 13 PWNLLLKACIKAKD--YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 13 ~~n~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
-+++.=.+|.+-.+ +-+-..-+++|+++|-.|+.... ...|+-.|.+.+|.++|.+ .|.. |-.+.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEm 667 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEM 667 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHH
Confidence 35555667766555 33344445678888887887643 3445667888888888754 4432 223444
Q ss_pred hHhcCCHHHHHHHHccCCC-------CChhHH-------HHHHHHHHhCCChHHHHHHHHH------HHHcCC---CCCH
Q 047393 91 NSRCGKIDDADLAFKSTPE-------KNSLSW-------TFIISARVNHGHPSEALDLFKD------KQWRYT---SMNP 147 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~-------~d~~~~-------~~li~~~~~~g~~~~A~~l~~~------m~~~g~---~p~~ 147 (373)
|....-+|.|.+++..-.. +.-..| .+-...+...|+.++|.++.-+ +.+-+. ..+.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 4444555555555543220 000111 1222334445555555544311 111111 2244
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCCH----------
Q 047393 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP-GKLCP---------- 216 (373)
Q Consensus 148 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~---------- 216 (373)
.+...+...+-+...+..|-++|..| .+ ..++++.....+++++|+.+-++ .+ ..||+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~-gD---------~ksiVqlHve~~~W~eAFalAe~-hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKM-GD---------LKSLVQLHVETQRWDEAFALAEK-HPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHh-cc---------HHHHhhheeecccchHhHhhhhh-CccccccccchHHHHhhh
Confidence 56666666667778888888899887 22 23577888889999999999998 54 44554
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 217 -LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 217 -~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.-|.-.-++|.+.|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 2344556788899999999999998875
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.035 Score=47.67 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 047393 50 CDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107 (373)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 107 (373)
+.++..+.-.+.+.-...++...++..-+.++..-..|...-.+.|+.+.|...|++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444445555555554444444555555555555555555555555533
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.66 E-value=0.13 Score=41.93 Aligned_cols=128 Identities=10% Similarity=0.010 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHH
Q 047393 110 KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189 (373)
Q Consensus 110 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 189 (373)
|++..--.|..+..+.|+..+|...|++....-..-|......+.++....+++..|...++.+-+...-.-++.+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444556677777778888888877777665555567777777777777778877877777764431100122333455
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047393 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237 (373)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 237 (373)
...|...|+.++|+.-|+-++...|++..---...-+.+.|+..+|..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 667777777777777777766666665433333344455665555543
No 192
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.35 Score=44.54 Aligned_cols=162 Identities=17% Similarity=0.030 Sum_probs=106.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCC---C----hhHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047393 85 NCLININSRCGKIDDADLAFKSTPEK---N----SLSWTFIISARVN---HGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~---d----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 154 (373)
..++-.|....+++...++.+.+... + ...-.-..-++-+ .|+.++|++++..+....-.++..||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688999999999999998854 1 1112223445556 899999999999977666678888888777
Q ss_pred HHHHc---------cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH----HHHHHH---HhhC------CC
Q 047393 155 KAYAL---------MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE----EVLEFI---KGIV------PG 212 (373)
Q Consensus 155 ~~~~~---------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~~~------~~ 212 (373)
+.|-. ...+++|...|.+. +.+.||..+--.+...+.-.|... +..++- ...+ ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 22467788777744 345565543333333344444322 222222 1101 12
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 213 KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 213 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..+--.+.+++.++.-.|+.++|.+..+.|....|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2355677888999999999999999999999977654
No 193
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.58 E-value=0.38 Score=47.49 Aligned_cols=199 Identities=10% Similarity=-0.006 Sum_probs=109.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-chhHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLIS-HPAVGNCL 87 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~l 87 (373)
-|...|..+--++...|+++.+.+.|++.... ..-....|..+-..+...|.-..|..+++.-....-.| +...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 46666777777777777777777777776542 22244556666666666666666666666543222112 23333222
Q ss_pred HHHhH-hcCCHHHHHHHHccCC--------CCChhHHHHHHHHHHhC-----------CChHHHHHHHHHHHHcC-CCCC
Q 047393 88 ININS-RCGKIDDADLAFKSTP--------EKNSLSWTFIISARVNH-----------GHPSEALDLFKDKQWRY-TSMN 146 (373)
Q Consensus 88 i~~~~-~~g~~~~A~~~~~~m~--------~~d~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g-~~p~ 146 (373)
-..|. +.+..++++..-.+.. ......|-.+.-+|... ....++++.+++..+.+ -.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 22232 2244444433322221 11344444444444321 11345666666665543 3455
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
...|.++-. +..++++.|.+..++..+- +-.-+...|.-|.-.+...+++.+|+.+.+.++.
T Consensus 480 ~if~lalq~--A~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 480 VIFYLALQY--AEQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHH--HHHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 555544443 3556777777777777543 3345666777777777777777777777776654
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.022 Score=45.30 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH----HHcCCCCCHhHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME----EVYHIEPSEEHY 186 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~~g~~p~~~~~ 186 (373)
+...++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.++|+.+. ++.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456666677777888877777777663 4567777788888888888888877777653 345777776543
No 195
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.76 Score=43.58 Aligned_cols=81 Identities=9% Similarity=-0.116 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC 86 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 86 (373)
.+|-+.|+.=..+|+..|++++|++=-.+-.+ +.|+- -.|+-.-.++.-.|++++|..-|.+=++.. +.|...++.
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~g 109 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTG 109 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHh
Confidence 45778888888899999999988875444443 66764 368888888888889999988887755543 334455555
Q ss_pred HHHHh
Q 047393 87 LININ 91 (373)
Q Consensus 87 li~~~ 91 (373)
|..++
T Consensus 110 l~~a~ 114 (539)
T KOG0548|consen 110 LAQAY 114 (539)
T ss_pred HHHhh
Confidence 55554
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.52 E-value=0.0075 Score=40.97 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG-LVGEAYRLFLSME 174 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~ 174 (373)
+.+|..+...+...|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|.+.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4556666666666666666666666666553 224455556666666666 5666666666554
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.52 E-value=0.016 Score=38.74 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 120 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
..+.+.|++++|.+.|++..+.. +-+...+..+-.++...|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555443 11334444445555555555555555555543
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.50 E-value=0.041 Score=42.44 Aligned_cols=80 Identities=9% Similarity=-0.052 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHH-H
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLC---------------CGFIDSYSICDILNSCLNPILLNVGTQAQAYM-T 73 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m-~ 73 (373)
|..++.++|-++++.|+.+....+++..-.- .+.|+..+..+++.+++..+++..|.++.+.. .
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567888999999999998888887654211 12344444555555555555555555555444 2
Q ss_pred HcCCCCchhHHHHHHH
Q 047393 74 KRGLISHPAVGNCLIN 89 (373)
Q Consensus 74 ~~g~~~~~~~~~~li~ 89 (373)
..+++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 2344444444444443
No 199
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.47 E-value=0.22 Score=49.61 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=103.4
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047393 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
...|.+++|+.+|++-++. -.|=+.|...|.+++|.++-+.=-+..+ ..||..-..-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 4678888999998888763 2233456677899999887665322221 234444444455567788888
Q ss_pred HHHccCCCC-----------------------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 102 LAFKSTPEK-----------------------NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 102 ~~~~~m~~~-----------------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
+.|++-..+ |...|.=....+-..|+.+.|+.+|...+ -|-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEe
Confidence 887754322 33334434444455677777777766543 3556666677
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (373)
-.|+.++|-++-++- -|....-.|...|-..|++.+|..+|.++
T Consensus 950 ~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 788888887776543 35566667788888888888888888764
No 200
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.42 E-value=0.032 Score=48.39 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHHHHccCC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----------
Q 047393 100 ADLAFKSTP--EKNSLSWTFIISARVNH-----GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG----------- 161 (373)
Q Consensus 100 A~~~~~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 161 (373)
.++.|.... ++|..+|-+.+..|... +..+-...-++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666665 67888888888888654 556666777888999999999999999998865432
Q ss_pred -----CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 162 -----LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 162 -----~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
+-+-+.+++++| +.+|+.||..+-..|+.++++.|-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 334578999999 66799999999999999999987643
No 201
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.39 E-value=0.69 Score=41.56 Aligned_cols=192 Identities=13% Similarity=-0.026 Sum_probs=113.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH---HHHhHhcCCHHHHHHHHccCCCCChhHHHHH---HHHHHhC
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL---ININSRCGKIDDADLAFKSTPEKNSLSWTFI---ISARVNH 125 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~l---i~~~~~~ 125 (373)
+-+.+...|++..|+.-|...++- |+..|.++ ...|.-.|+-..|+.=|++..+-.+..+.+- ...+.+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 344444445555555555544432 22222222 2334444444444444444332111111111 1234455
Q ss_pred CChHHHHHHHHHHHHcCCCC------------CH--HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 126 GHPSEALDLFKDKQWRYTSM------------NP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 126 g~~~~A~~l~~~m~~~g~~p------------~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
|.+++|..=|+..++....- -. ......+..+...|+...|+.....+.+. .+.|...|..=..
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAK 197 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHH
Confidence 66666666666555442110 00 11122334456689999999999988764 2558888888889
Q ss_pred HHHhcCCHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGK-LCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+|...|.+..|..=+..+-+.. -+..+..-+-..+...|+.+.+....++-++++|++
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 9999999999988777643433 355677777788889999999999999999999987
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.39 E-value=0.35 Score=42.12 Aligned_cols=145 Identities=10% Similarity=0.028 Sum_probs=79.9
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC--CC-hhHH---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 047393 87 LININSRCGKIDDADLAFKSTPE--KN-SLSW---TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL- 159 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~--~d-~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~- 159 (373)
....+.+.|++++|.+.|+++.. |+ ...- -.+..++.+.+++++|...+++..+....-...-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445668899999999988864 32 2222 34566778899999999999998876322222333333333321
Q ss_pred -c---------------CC---HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 047393 160 -M---------------GL---VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220 (373)
Q Consensus 160 -~---------------g~---~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (373)
. .+ ...|...|+.+.+.+ |+. .-..+|..-+.. ++..--..- -
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~-l~~~la~~e-~ 179 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVF-LKDRLAKYE-L 179 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHH-HHHHHHHHH-H
Confidence 1 11 234556666665553 332 222333332222 110000011 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 221 TLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+.+-|.+.|.+.-|..-++.+++.-|+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t 208 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDT 208 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCC
Confidence 33455777788888888888888766666
No 203
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.35 E-value=0.052 Score=42.47 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=47.4
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcC-----
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP--LIWRTLLLSSRVHG----- 230 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~li~~~~~~g----- 230 (373)
+.|++++|.+.|+.+..++...| ....--.++.+|.+.|++++|...+++.++..|+. +-|...+.|+..-.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~ 101 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGS 101 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhH
Confidence 45555555555555544433322 22334445555555556555555555544433321 22222233322111
Q ss_pred ------------CHHHHHHHHHHHhccCCCC-cc
Q 047393 231 ------------DMKLAKYALDKLLELDPGM-YV 251 (373)
Q Consensus 231 ------------~~~~A~~~~~~m~~~~P~~-y~ 251 (373)
....|..-|+.+++.-|++ |.
T Consensus 102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 2557777788888877877 54
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.31 E-value=0.19 Score=45.57 Aligned_cols=125 Identities=16% Similarity=0.065 Sum_probs=98.1
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
+.+..|.-+...|+...|.++-.+..-||..-|-..|.+++..++|++-.++-.. +-+++-|-.++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4445566677889999999999999999999999999999999999987665432 2244889999999999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 228 (373)
..+|..+...+ + +..-+..|.++|++.+|.+.--+ ..|......+..-+-.
T Consensus 253 ~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~----~kd~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 253 KKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFK----EKDIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHH----cCCHHHHHHHHHHCCC
Confidence 99999999874 1 23467889999999999998766 3366655555554433
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.17 E-value=0.082 Score=48.91 Aligned_cols=135 Identities=14% Similarity=0.075 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRY-TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 190 (373)
..+|.+.|++-.+..-.+.|..+|-+..+.| +.++...++++|..++ .|+...|..+|+.-...+ +-+....+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHH
Confidence 4568888998888888999999999999998 7889999999999887 578889999998765542 33344445778
Q ss_pred HHHHhcCCHHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 191 EALGRAGMFEEVLEFIKGIVP-GKLC--PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.-+.+.++-+.|..+|+..++ +..+ -..|..+|.-=..-|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 888899999999999997554 2223 4689999999899999999999888888877766
No 206
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.16 E-value=0.62 Score=38.74 Aligned_cols=222 Identities=18% Similarity=0.041 Sum_probs=159.3
Q ss_pred cCCHhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHhHhcCCHHHHH
Q 047393 24 AKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKR-GLISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 24 ~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
.+.+..+...+......... .....+......+...+.+..+...+...... ........+......+...++++.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654322 13566777778888889999988888887653 33455667777778888888899999
Q ss_pred HHHccCCC--CC-hhHHHHHHH-HHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 102 LAFKSTPE--KN-SLSWTFIIS-ARVNHGHPSEALDLFKDKQWRYT--SMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 102 ~~~~~m~~--~d-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
+.+..... ++ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 99887764 22 223333333 78899999999999999855221 12344455555557788999999999999865
Q ss_pred HcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 176 VYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 176 ~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
. ... ....+..+-..+...+..+.|...+.......|+ ...+..+...+...+..+.+...+.+.....|
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4 233 3677888888999999999999999997776665 45555566666677789999999999888665
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.14 E-value=0.59 Score=38.31 Aligned_cols=125 Identities=14% Similarity=0.051 Sum_probs=93.2
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCCHHH
Q 047393 77 LISHPAVGNCLININSRCGKIDDADLAFKSTPE----KNSLSWTFIISARVNHGHPSEALDLFKDKQWRY---TSMNPTT 149 (373)
Q Consensus 77 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t 149 (373)
..|++..--.|..++.+.|+..+|...|.+-.. .|....-.+.++....+++..|...++++.+.+ -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 357777777788888899999999998887653 477777788888888899999999888887653 2333 4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047393 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 150 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 206 (373)
...+.+.+.-.|....|+.-|+....- -|+.....-.-..+.+.|+.++|..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 445667777889999899999888543 577666666667778888777665433
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.11 E-value=0.024 Score=39.53 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCC----CC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 185 HYSIMVEALGRAGMFEEVLEFIKGIVP----GK---LC-PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+++.+...|.+.|++++|+..|++++. .. |+ ..+++.+...+...|++++|.+.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555555555555554432 11 11 24555666666666666666666665543
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.24 Score=43.57 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHhhCCCCCC-HHHH
Q 047393 144 SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA---GMFEEVLEFIKGIVPGKLC-PLIW 219 (373)
Q Consensus 144 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~p~-~~~~ 219 (373)
+-|...|-.|-.+|...|+.+.|..-|....+-. .++...+..+..++... ....++.++|++++..+|+ +.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 5578899999999999999999999999886543 34556666666666543 3466899999998888884 5566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 220 RTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 220 ~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
.-|..++...|++.+|...|+.|.+..|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 6666789999999999999999999655
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.96 E-value=1.3 Score=40.63 Aligned_cols=212 Identities=13% Similarity=0.068 Sum_probs=108.7
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH
Q 047393 23 KAKDYEMVHELLERIQLCCGFIDSY--SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 100 (373)
-.|+++.|.+-|+-|... |... -...|.-.-.+.|+-+.|.+.-+..-... +.=...+.+.+...|..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 357777888778777752 2221 12233333456677777766666654332 22356788899999999999999
Q ss_pred HHHHccCC-----CCChhH--HHHH-------------------------------------HHHHHhCCChHHHHHHHH
Q 047393 101 DLAFKSTP-----EKNSLS--WTFI-------------------------------------ISARVNHGHPSEALDLFK 136 (373)
Q Consensus 101 ~~~~~~m~-----~~d~~~--~~~l-------------------------------------i~~~~~~g~~~~A~~l~~ 136 (373)
+++.+.-. ++|+.- -..| ..++.+.|+..++-.+++
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 99987433 222111 1111 223444555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 137 DKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS-EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 137 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.+-+.. |...... +..+.+.|+. +..-++...+--.++|| ...--.+..+-...|++..|..--+.+....|.
T Consensus 288 ~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 288 TAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 554442 2222111 1112233332 22222222111122332 233344445555556665555544443345666
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHhc
Q 047393 216 PLIWRTLLLSS-RVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 216 ~~~~~~li~~~-~~~g~~~~A~~~~~~m~~ 244 (373)
...|-.|.+.- ...|+-.++...+.+...
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 66666666554 344777777777666665
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.95 E-value=0.055 Score=42.97 Aligned_cols=71 Identities=17% Similarity=0.102 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHH-----HcCCCCchhHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT-----KRGLISHPAVG 84 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~g~~~~~~~~ 84 (373)
+...++..+...|++++|.++.+.+.... +-|...|..+|.++...|+..+|.+.|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455566667888888888888877642 2366678888888888888888888887763 34777776553
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.91 E-value=0.041 Score=37.67 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
.|.+.+++++|.++++.+...+ +.+...+...-..+.+.|++++|...++...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444455555555555544442 2233344444444444555555555555443
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.87 E-value=0.61 Score=45.73 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
....-.+.+++.+.|.-++|.+-|-+
T Consensus 852 s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 852 SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 33444445555555555555554444
No 214
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.83 E-value=0.5 Score=37.12 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCCh
Q 047393 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128 (373)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~ 128 (373)
...++..+.+.+.......+++.+.+.+ ..+...+|.++..|++.+ .++..+.++. ..+.......+..|.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3456677777778888888888887776 367778888888887753 2333344432 12223333344455555555
Q ss_pred HHHHHHHHH
Q 047393 129 SEALDLFKD 137 (373)
Q Consensus 129 ~~A~~l~~~ 137 (373)
+++.-++.+
T Consensus 86 ~~~~~l~~k 94 (140)
T smart00299 86 EEAVELYKK 94 (140)
T ss_pred HHHHHHHHh
Confidence 555444443
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.048 Score=50.90 Aligned_cols=96 Identities=11% Similarity=-0.010 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHH
Q 047393 144 SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE----EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219 (373)
Q Consensus 144 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 219 (373)
+.+...++.+-.+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|.+.++++++..+ ..|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn--~~f 146 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN--LKF 146 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--hhH
Confidence 345678999999999999999999999987654 6764 3588999999999999999999999887421 122
Q ss_pred HHHHH--HHHHcCCHHHHHHHHHHHhc
Q 047393 220 RTLLL--SSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 220 ~~li~--~~~~~g~~~~A~~~~~~m~~ 244 (373)
..+.. .+....+.++..++++...+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk 173 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARK 173 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHH
Confidence 22211 11223334466677776665
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.51 E-value=0.24 Score=46.35 Aligned_cols=65 Identities=3% Similarity=-0.257 Sum_probs=57.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS----YSICDILNSCLNPILLNVGTQAQAYMTKR 75 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 75 (373)
.+...|+.+-.+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|...+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999887 45764 35899999999999999999999998875
No 217
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.50 E-value=0.92 Score=35.58 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCC
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP 59 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 59 (373)
-..+|..+...+........++.+...+ ..+....+.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555555666666655555544 23444555555555543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.45 E-value=0.053 Score=37.75 Aligned_cols=62 Identities=8% Similarity=-0.073 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC--GF---ID-SYSICDILNSCLNPILLNVGTQAQAYMT 73 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g--~~---p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 73 (373)
.+|+.+-..|...|++++|++.|++..+.. .. |+ ..++..+..++...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567888888888899999988888876421 11 22 3456666677777777777777776654
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=95.45 E-value=1 Score=36.24 Aligned_cols=86 Identities=8% Similarity=-0.126 Sum_probs=61.4
Q ss_pred HHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHH
Q 047393 157 YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK-LCPLIWRTLLLSSRVHGDMKLA 235 (373)
Q Consensus 157 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A 235 (373)
+-..|++++|..+|+-+..- + .-+..-+..|..++-..+++++|...|..+.... -|+..+--+..++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 34678999999999887542 1 2255556677777777889999999887643322 2444455567788888999999
Q ss_pred HHHHHHHhc
Q 047393 236 KYALDKLLE 244 (373)
Q Consensus 236 ~~~~~~m~~ 244 (373)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 998888776
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.25 E-value=0.54 Score=43.75 Aligned_cols=141 Identities=15% Similarity=0.084 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCC-----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTP-----EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF-RSAL 154 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll 154 (373)
..+|-..++.-.|..-++.|..+|-+.. .+++..++++|.-++ .|+..-|..+|+-=... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455555555555555666666665443 235556666665554 34455566666543222 2343333 3445
Q ss_pred HHHHccCCHHHHHHHHHHhHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047393 155 KAYALMGLVGEAYRLFLSMEEVYHIEPS--EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS 226 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~ 226 (373)
..+...++-+.|..+|+....+ +.-+ ...|..+|+-=..-|++..|..+=+++....|...+-.....-|
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHH
Confidence 5555666666666666644332 1222 35666666666666777666666555333455544444444433
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.13 E-value=0.043 Score=33.54 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 218 IWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+|..+..+|...|++++|.++++++++.+|++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45666677777777777777777777777665
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.27 Score=45.03 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..+++.+.-+|.+.+++.+|.+.-++.+..+| |+-..-.=..+|...|+++.|...|+++++++|++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 45667777888888999999998888777665 55555566888888899999999999999988876
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.69 Score=40.78 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHhHHHcCCCC-CHhHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA---LMGLVGEAYRLFLSMEEVYHIEP-SEEHY 186 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~g~~~~a~~~~~~m~~~~g~~p-~~~~~ 186 (373)
|...|-.|...|...|+++.|..-|....+.- .+|...+..+..++. ...+-.++..+++++.+. .| |+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccHHHH
Confidence 78899999999999999999999999987752 345555554444433 334567899999998654 45 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~ 225 (373)
.-|-..+...|++.+|...++.|+..-|....+..+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 677788899999999999999988866666666666643
No 224
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.66 E-value=1 Score=40.47 Aligned_cols=125 Identities=8% Similarity=0.043 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh--cC----CHHHHHHHHccCCC-------CChhHHHHHHHHHHhCCC-
Q 047393 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSR--CG----KIDDADLAFKSTPE-------KNSLSWTFIISARVNHGH- 127 (373)
Q Consensus 62 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~-------~d~~~~~~li~~~~~~g~- 127 (373)
+++...+++.|.+.|+..+..+|-+....... .. ....|.++|+.|++ ++-.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666666666666665555442222222 11 24456666666653 244555555544 2222
Q ss_pred ---hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHhHHHcCCCCCHhHHHHH
Q 047393 128 ---PSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGL--VGEAYRLFLSMEEVYHIEPSEEHYSIM 189 (373)
Q Consensus 128 ---~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~g~~p~~~~~~~l 189 (373)
.+.+..+|+.+.+.|+..+. .....++..+..... +..+..+++.+.+. |+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHH
Confidence 24455666666666665432 233333333222222 33566777777444 777766665544
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.48 E-value=1 Score=43.90 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHH---------HHHHHhcCCCCCHHHHHHHHHHHcCCCch--HHHHHHHHHHHHcCC
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHEL---------LERIQLCCGFIDSYSICDILNSCLNPILL--NVGTQAQAYMTKRGL 77 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l---------~~~m~~~g~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~ 77 (373)
|..+.+.+=+..|...|.+++|.++ |+.+... ..+.-.+++.=++|.+..+. -+...-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 3445566666778888998888764 2222221 12344455666677666553 344455667788887
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 047393 78 ISHPAVGNCLININSRCGKIDDADLAFKST 107 (373)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 107 (373)
.|+.... ...++=.|++.+|-++|.+-
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 7775532 33455567888888888654
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.45 E-value=3.9 Score=42.86 Aligned_cols=103 Identities=17% Similarity=0.040 Sum_probs=58.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH--hHHHHHHHHHHhcCCH
Q 047393 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE--EHYSIMVEALGRAGMF 199 (373)
Q Consensus 122 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~ 199 (373)
+.....+++|.-.|+..-+ .--.+.+|...|+|.+|..+..++.. .-|. .+-..|+.-+...++.
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccc
Confidence 3445566666555544311 11245666677777777777766621 1122 2225666777777888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 200 EEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
-+|-++..+... .| .-.+..|++...+++|.++.....
T Consensus 1016 ~eAa~il~e~~s-d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS-DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hhHHHHHHHHhc-CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888887777332 22 233445566667888877665544
No 227
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.35 E-value=0.12 Score=29.09 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 217 LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..|..+...+...|++++|.+.+++..+++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888899999999999999999988864
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.34 E-value=0.55 Score=40.87 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=44.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC----CHHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL----CPLIWRTLL 223 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li 223 (373)
.|+..+..+ +.|++..|..-|....+.+.-.+ ....+--|...+...|+.++|..+|..+.+..| -+...-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 444444332 34445555555555544321000 111222345555555555555555554333222 224444445
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 224 LSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.+..+.|+.++|...|+++.+.-|+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 5555555555555555555554443
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.21 E-value=2 Score=33.18 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=72.2
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047393 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
.-.|.+++..++..+.... .+..-+|-++.-....-+.+-..+.++.. |--.|.. .+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCch----------hhcchHHHH
Confidence 4457777777777776653 23334555444433333333333333333 2222322 223333333
Q ss_pred HHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC
Q 047393 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179 (373)
Q Consensus 102 ~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~ 179 (373)
..+-.+. .+....+.-+....+.|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++.+..+. |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3332221 12223455667778888888888888887653 3677888888888999999998888888888665 54
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.20 E-value=5 Score=37.71 Aligned_cols=222 Identities=15% Similarity=0.050 Sum_probs=118.5
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHhHhc
Q 047393 22 IKAKDYEMVHELLERIQLCCGFIDS------YSICDILNSCLNPILLNVGTQAQAYMTKR-GLISHPAVGNCLININSRC 94 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~ 94 (373)
-+.+++.+|.++|.+..+. ...+. ..-+.+++|+-. .+++.....+....+. |-.+-...+.+|. ..+.
T Consensus 17 qkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHh
Confidence 3667888888888887654 22222 223456666654 3455555555555332 3222222222222 3466
Q ss_pred CCHHHHHHHHccCCC-------C-----------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCHHHHHH
Q 047393 95 GKIDDADLAFKSTPE-------K-----------NSLSWTFIISARVNHGHPSEALDLFKDKQWRY----TSMNPTTFRS 152 (373)
Q Consensus 95 g~~~~A~~~~~~m~~-------~-----------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ 152 (373)
+++++|.+.|..-.+ + |..-=+..+.++...|++.++..++++|...= +.-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 778887777643221 1 11222455667778888888888887776543 3367777776
Q ss_pred HHHHHHccCC--------HHHHHHHHH----------------------------HhH---------------------H
Q 047393 153 ALKAYALMGL--------VGEAYRLFL----------------------------SME---------------------E 175 (373)
Q Consensus 153 ll~~~~~~g~--------~~~a~~~~~----------------------------~m~---------------------~ 175 (373)
++-.++++=- .+-+..+|+ .+. +
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 4444333211 111111111 110 1
Q ss_pred HcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHhhCC--C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 176 VYHIEPSE-EHYSIMVEALGRAGMFEEVLEFIKGIVP--G----KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 176 ~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.+-+.|+- -+...|+..+.+ +.+++..+-+.... + +.-..++..++....+.++..+|.+.+..+.-++|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 11122321 112223333332 44444444443111 1 113468899999999999999999999999989998
Q ss_pred C
Q 047393 249 M 249 (373)
Q Consensus 249 ~ 249 (373)
.
T Consensus 331 ~ 331 (549)
T PF07079_consen 331 I 331 (549)
T ss_pred c
Confidence 7
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=1.2 Score=38.86 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH-hHHHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYT--SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE-EHYSIMV 190 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li 190 (373)
.|+.-+..+ +.|++.+|..-|....+... .-....+-.|-.++...|+++.|..+|..+.+.++-.|.. ...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 477777655 56779999999999988731 1123456668889999999999999999998887655543 6777788
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCCHH
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGKLCPL 217 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (373)
....+.|+.++|..+|+...+..|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 889999999999999999666677654
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.13 E-value=2.8 Score=39.96 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=94.8
Q ss_pred HHHcCCHhHHHHHHH--HHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHH
Q 047393 21 CIKAKDYEMVHELLE--RIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKID 98 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 98 (373)
..-.++++++.++.+ ++.. .+ +..-.+.++.-+-+.|..+.|+++-.+-. .-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 445788888777664 1211 12 23446777777888888888877654321 1234456788899
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcC
Q 047393 99 DADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH 178 (373)
Q Consensus 99 ~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g 178 (373)
.|.++-++.. +...|..|.....+.|+++-|.+.|++... |..++-.|.-.|+.+.-.++-+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 9988877765 666888898888889999988888876542 445555666678877766666665332 2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 179 IEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 179 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
-+|....++.-.|+.++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 245555556666777777777776
No 233
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.08 E-value=0.14 Score=28.92 Aligned_cols=32 Identities=28% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 217 LIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.+|..+...+...|++++|...|++.++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888899999999999998888875
No 234
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.08 E-value=0.22 Score=45.65 Aligned_cols=129 Identities=9% Similarity=-0.066 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHH---HcC-CCCCHhHH
Q 047393 116 TFIISARVNHGHPSEALDLFKDK----QWRYTS-MNPTTFRSALKAYALMGLVGEAYRLFLSMEE---VYH-IEPSEEHY 186 (373)
Q Consensus 116 ~~li~~~~~~g~~~~A~~l~~~m----~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~---~~g-~~p~~~~~ 186 (373)
..|-+.|.-.|+++.|+..-+.- ++-|-+ .....+..+-+++.-.|+++.|.+.|+.... +.| -......+
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc 278 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC 278 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33444444456677776543321 222321 2345677777888888888888888876421 111 12344566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVPGK-------LCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
-+|...|--...+++|..++.+=+.+. -....+.+|..++...|..++|..+.+.-.+
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 677777877788888888888855521 2347899999999999999999998888886
No 235
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.90 E-value=3.4 Score=34.78 Aligned_cols=169 Identities=11% Similarity=0.040 Sum_probs=93.3
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C--ChhHHHHHHHHHHhCCC
Q 047393 54 NSCLNPILLNVGTQAQAYMTKRGLI--SHPAVGNCLININSRCGKIDDADLAFKSTPE--K--NSLSWTFIISARVNHGH 127 (373)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~--d~~~~~~li~~~~~~g~ 127 (373)
..+.+.|++.+|.+.|+.+...... --....-.++.++.+.|++++|...|++..+ | ....+-..+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3445678889999999888765311 1233445567788888888888888877652 2 12222222222221111
Q ss_pred hHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 128 PSEALDLFKDKQWRYTSMN-------PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 128 ~~~A~~l~~~m~~~g~~p~-------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
..... ....| ..+|..++.-|=.+.-..+|...+..+.+.. - ..--.+...|.+.|.+.
T Consensus 93 ~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a-~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 93 IPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----A-EHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----H-HHHHHHHHHHHCTT-HH
T ss_pred Cccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHcccHH
Confidence 10000 00011 1234445555555666666666655553321 1 11123567888999999
Q ss_pred HHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHH
Q 047393 201 EVLEFIKGIVPGKLCP----LIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 201 ~A~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~ 236 (373)
.|..-++.+++.-|+. ...-.++.++.+.|..+.|.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999888877655654 56688889999999887554
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.77 E-value=6.9 Score=37.78 Aligned_cols=174 Identities=13% Similarity=0.021 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CCCc-----hhHHHHHHHHhHh----cCCHH
Q 047393 29 MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG-LISH-----PAVGNCLININSR----CGKID 98 (373)
Q Consensus 29 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~-----~~~~~~li~~~~~----~g~~~ 98 (373)
-..-+|+-+.+- ++| .+..++...+=.|+-+.+.+.+.+..+.+ +.-. ..+|+..+..++- ....+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 344556666653 333 34566677777788888888887765432 2111 2234444444333 45678
Q ss_pred HHHHHHccCCC--CChhHHHHHH-HHHHhCCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 047393 99 DADLAFKSTPE--KNSLSWTFII-SARVNHGHPSEALDLFKDKQWRY--T-SMNPTTFRSALKAYALMGLVGEAYRLFLS 172 (373)
Q Consensus 99 ~A~~~~~~m~~--~d~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 172 (373)
.|.++++.+.+ |+..-|...- ..+...|++++|++.|++..... . ......+--+.-.+.-.+++++|.+.|..
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 88888888875 6766665443 34566788888888888754321 1 11233444455556778888888888888
Q ss_pred hHHHcCCCCCHhHHHHHH-HHHHhcCCH-------HHHHHHHHh
Q 047393 173 MEEVYHIEPSEEHYSIMV-EALGRAGMF-------EEVLEFIKG 208 (373)
Q Consensus 173 m~~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~ 208 (373)
+.+.... +..+|.-+. .++...|+. ++|.++|.+
T Consensus 331 L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 331 LLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 8765433 333443332 233446666 888888887
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.75 E-value=0.15 Score=31.11 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
+..+...|.+.|++++|.++|+++++..|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34444555555555555555555444444
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.63 E-value=1.9 Score=38.66 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC--CC----chHHHHHHHHHHHHc
Q 047393 28 EMVHELLERIQLCCGFIDSYSICDILNSCLN--PI----LLNVGTQAQAYMTKR 75 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~ 75 (373)
++.+++++.|.+.|++-+.++|.+..-.... .. ....|..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555554443222222 11 234455555555444
No 239
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=2.9 Score=38.66 Aligned_cols=24 Identities=17% Similarity=-0.122 Sum_probs=16.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhc
Q 047393 17 LLKACIKAKDYEMVHELLERIQLC 40 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~ 40 (373)
.-..+.+..++..|+..+....+.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~ 78 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDM 78 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHh
Confidence 344566667778888888877774
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.55 E-value=2.1 Score=40.87 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININS 92 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 92 (373)
-.+.+++-+-+.|..+.|+++-+.- .+ -.....+.|+++.|.++-.+ ..+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~---------~~---rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP---------DH---RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H---------HH---HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh---------HH---HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 3788899999999999999874332 21 22334577899999876543 357889999999999
Q ss_pred hcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 047393 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLS 172 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 172 (373)
+.|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++..+++.+
T Consensus 359 ~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999875 56777778888999888777777666665 256666666777888888877765
Q ss_pred h
Q 047393 173 M 173 (373)
Q Consensus 173 m 173 (373)
.
T Consensus 428 ~ 428 (443)
T PF04053_consen 428 T 428 (443)
T ss_dssp T
T ss_pred c
Confidence 4
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.48 E-value=5.6 Score=39.40 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCC--------CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChh
Q 047393 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKR-GLI--------SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL 113 (373)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~ 113 (373)
.|-+..|..+.......-.++.|+..|-+.... |++ .+...-.+=|.+| -|++++|++++-+|..+|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh
Confidence 466777777776655555666666655443221 221 1111222223333 38899999999888877743
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSM----NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM 189 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 189 (373)
|..+.+.|+|-...++++. .|-.. -...|+.+-..+.....|++|.++|..-.. -...
T Consensus 767 -----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~~ 828 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TENQ 828 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHhH
Confidence 5666777888777766543 11111 135788888888888888888888865411 1235
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047393 190 VEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALD 240 (373)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 240 (373)
+++|.+...+++-+.+-.. ++ -+....-.|...+.+.|.-++|.+.+-
T Consensus 829 ~ecly~le~f~~LE~la~~-Lp--e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-LP--EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-cC--cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 6677776777766666665 43 133344556666667777777666553
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=1.3 Score=40.76 Aligned_cols=124 Identities=10% Similarity=-0.045 Sum_probs=84.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhH
Q 047393 120 SARVNHGHPSEALDLFKDKQWR-----YTSM---------NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH 185 (373)
Q Consensus 120 ~~~~~~g~~~~A~~l~~~m~~~-----g~~p---------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 185 (373)
+.|.+.|++..|...|++.... +..+ -..+++.+.-+|.+.+++..|.+.-...... -++|+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhH
Confidence 4566777777777776664321 1111 2346777888889999999999888887543 1446655
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCCH-HHHHHHHHHHhcc
Q 047393 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSS-RVHGDM-KLAKYALDKLLEL 245 (373)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~-~~A~~~~~~m~~~ 245 (373)
.-.=-.++...|+++.|...|+++++..|+...-+.=+..| -+.... +...++|..|...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556788889999999999999888889665444444444 444443 4447789988873
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.92 E-value=4.7 Score=38.91 Aligned_cols=156 Identities=17% Similarity=0.089 Sum_probs=100.8
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCC-C---------hhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 047393 87 LININSRCGKIDDADLAFKSTPEK-N---------SLSWTFIISARVN----HGHPSEALDLFKDKQWRYTSMNPTTFRS 152 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~-d---------~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 152 (373)
++...+=.|+-+.+++.+.+-.+. + ...|+..+..++- ....+.|.++++.+.+. -|+...|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 334444557888888887655432 1 2456666666554 35677899999999887 688777765
Q ss_pred HH-HHHHccCCHHHHHHHHHHhHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHH-H
Q 047393 153 AL-KAYALMGLVGEAYRLFLSMEEVYHIEP--SEEHYSIMVEALGRAGMFEEVLEFIKGIVPG-KLCPLIWRTLLLSS-R 227 (373)
Q Consensus 153 ll-~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~-~ 227 (373)
.- +.+...|++++|.+.|+.......--| ....+--+.-.+.-.+++++|.+.|.++.+. .....+|.-+..+| .
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 43 456678999999999997542101111 2223334445567789999999999995552 33455555555444 4
Q ss_pred HcCCH-------HHHHHHHHHHhc
Q 047393 228 VHGDM-------KLAKYALDKLLE 244 (373)
Q Consensus 228 ~~g~~-------~~A~~~~~~m~~ 244 (373)
..|+. ++|.++|+++..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 57777 778888887765
No 244
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.67 E-value=1.5 Score=38.76 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH----HcCCCCCHhHHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE----VYHIEPSEEHYSI 188 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~~~~ 188 (373)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566667777777777777777776663 45777777777777777777777777776643 3466666665555
Q ss_pred HHHH
Q 047393 189 MVEA 192 (373)
Q Consensus 189 li~~ 192 (373)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.62 E-value=8.5 Score=35.64 Aligned_cols=166 Identities=10% Similarity=-0.057 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHcC---CCCchhHHHHHHHHhHh---cCCHHHHHHHHccCC----CCChhHHHH
Q 047393 48 SICDILNSCLNPILLNVGTQAQAYMTKRG---LISHPAVGNCLININSR---CGKIDDADLAFKSTP----EKNSLSWTF 117 (373)
Q Consensus 48 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~----~~d~~~~~~ 117 (373)
+...++-+|....+++...++.+.+...- +.-...+-....-++-| .|+.++|.+++..+. .++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345555666666666666666665431 11112222223334444 566666666655522 234455555
Q ss_pred HHHHHHh---------CCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccC-CHHHHHHHH---HHhHHHcCC-C
Q 047393 118 IISARVN---------HGHPSEALDLFKDKQWRYTSMNPT---TFRSALKAYALMG-LVGEAYRLF---LSMEEVYHI-E 180 (373)
Q Consensus 118 li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g-~~~~a~~~~---~~m~~~~g~-~ 180 (373)
+...|-. ....++|++.|.+--+. .||.. -+.+++....... .-.+..++- ..+..+.|. .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 4444321 11256666666655443 24432 2233333322211 111222222 111111132 2
Q ss_pred --CCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 181 --PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 181 --p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.|-..+.++..+..-.|+.++|.+..++|.+..|.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 24455567888888899999999999997765543
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=92.62 E-value=1.3 Score=35.66 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc---CCCCChhHHHHHHHHHHhCCChHHHHHH
Q 047393 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKS---TPEKNSLSWTFIISARVNHGHPSEALDL 134 (373)
Q Consensus 58 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~d~~~~~~li~~~~~~g~~~~A~~l 134 (373)
..|++++|..+|..+...+ .-|..-|..|..++-..+++++|...|.. +...|...+--...+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 4455555555555554333 22333444455555555555555555532 1122333333344445555555555555
Q ss_pred HHHHHH
Q 047393 135 FKDKQW 140 (373)
Q Consensus 135 ~~~m~~ 140 (373)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 544443
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.60 E-value=9.8 Score=36.31 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 116 TFIISARVNHGHPSEALDLFKDKQWRYTS-MNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 116 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
..+..+..+.|+.++|.+.|++|.+..-. -+......|+.++...+...++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555666778888888888887654311 12345667777777788888887777765
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.53 E-value=5.2 Score=32.93 Aligned_cols=185 Identities=18% Similarity=0.047 Sum_probs=135.9
Q ss_pred CchHHHHHHHHHHHHcCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC-----CCChhHHHHHHHHHHhCCChHHHHH
Q 047393 60 ILLNVGTQAQAYMTKRGLI-SHPAVGNCLININSRCGKIDDADLAFKSTP-----EKNSLSWTFIISARVNHGHPSEALD 133 (373)
Q Consensus 60 ~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~ 133 (373)
+....+...+......... .....+......+...+.+..+...+.... ......+..+...+...+...++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555566666665544322 135777888888999999999988887654 3356677777788888888999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHhHHHcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 134 LFKDKQWRYTSMNPTTFRSALK-AYALMGLVGEAYRLFLSMEEVYHIEP----SEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 134 l~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
.+.........+. ........ .+...|+.+.|...++.... ..| ....+......+...++.++|...+.+
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9998887544431 22222222 78899999999999999844 233 334444555557788999999999999
Q ss_pred hCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 209 IVPGKLC--PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 209 ~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
++...++ ...+..+...+...++.+.|...+.......|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 7775555 678888889999999999999999999997764
No 249
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.17 E-value=9.6 Score=35.21 Aligned_cols=183 Identities=17% Similarity=0.054 Sum_probs=94.5
Q ss_pred CCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHH
Q 047393 59 PILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALD 133 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~ 133 (373)
.|+.+.|.+-|+.|.. .|.... ...|.-.--+.|..+.|...-++.-. | -.-.+.+.+...|..|+|+.|++
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 4666666666666653 122211 11222222344555555554443321 1 23456667777777788888877
Q ss_pred HHHHHHHcC-CCCCHH--HHHHHHHHHHcc---CCHHHHHHHHHHhHHHcCCCCCHhHHH-HHHHHHHhcCCHHHHHHHH
Q 047393 134 LFKDKQWRY-TSMNPT--TFRSALKAYALM---GLVGEAYRLFLSMEEVYHIEPSEEHYS-IMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 134 l~~~m~~~g-~~p~~~--t~~~ll~~~~~~---g~~~~a~~~~~~m~~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~ 206 (373)
+++.-++.. +.++.. .-..|+.+-... -+...|...-.+. ..+.||..--. .-..++.+.|++.++-.++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 777665443 344443 223344432221 2333444433333 24566653322 2346777788888888888
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccCCCC
Q 047393 207 KGIVPGKLCPLIWRTLLLSSRVHGDMKLA-KYALDKLLELDPGM 249 (373)
Q Consensus 207 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~P~~ 249 (373)
+.+.+..|.+..+...+. .+.|+.... .+-.+.+.++.|++
T Consensus 287 E~aWK~ePHP~ia~lY~~--ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 287 ETAWKAEPHPDIALLYVR--ARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HHHHhcCCChHHHHHHHH--hcCCCcHHHHHHHHHHHHhcCccc
Confidence 887777777776654433 345543222 12233444567776
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.14 E-value=8.2 Score=34.34 Aligned_cols=134 Identities=12% Similarity=-0.027 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhc--------CCCCCH-----HHHHHHHHHHcCCCch---HHHHHHHHHHHHc
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLC--------CGFIDS-----YSICDILNSCLNPILL---NVGTQAQAYMTKR 75 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~ 75 (373)
+.||.-...+.+..+++.|...+++..+. ...|+. .++..++.++...+.. ++|..+++.+...
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE 116 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 34565555554443666666655554332 122332 2344455555555443 3344455555332
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHH---HhCCChHHHHHHHHHHHHcCCCCCH
Q 047393 76 GLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISAR---VNHGHPSEALDLFKDKQWRYTSMNP 147 (373)
Q Consensus 76 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 147 (373)
. +-...++-.=+..+.+.++.+++.+++.+|... ....+..++..+ .. .....|...++.+....+.|..
T Consensus 117 ~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 117 Y-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred C-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 2 222334434445555566666666666666532 233444444433 22 2233455555555444444433
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=8.6 Score=34.10 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=77.9
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC----hhHHHHHHHHHHhCCChHH
Q 047393 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKN----SLSWTFIISARVNHGHPSE 130 (373)
Q Consensus 55 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d----~~~~~~li~~~~~~g~~~~ 130 (373)
.....++..+|..+|....... +-+...--.+..+|...|+.+.|..++..++... ......-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456678888888887776653 2334555667778888888888888888877421 1111222333444443333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcC
Q 047393 131 ALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAG 197 (373)
Q Consensus 131 A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 197 (373)
..++-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|++.+.-.|
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333332 24 5555556666677777777777666555444222223344445555444444
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.87 E-value=4.9 Score=31.15 Aligned_cols=119 Identities=10% Similarity=0.113 Sum_probs=71.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCC----------------CCHhHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIE----------------PSEEHYS 187 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~----------------p~~~~~~ 187 (373)
-.|..++..++..+..... +..-||.+|.-...+-+-+-..++++.+-+-+.+. .+.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD 90 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVD 90 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHH
Confidence 3566666666666665542 44455555554444444455555554442222111 2334456
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 188 IMVEALGRAGMFEEVLEFIKGIVP-GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
..++.+...|+-+.-.++....++ -++++...-.+..||.+.|+..++.+++.++-+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 667788888988888888888663 5788999999999999999999999999988763
No 253
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=4.3 Score=40.38 Aligned_cols=105 Identities=16% Similarity=0.136 Sum_probs=58.1
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 87 LININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
-+.-+...|+..+|.++-.+.+-||...|-.-+.+++..++|++-+++-+.+. .+.-|.-+..+|.+.|+.++|
T Consensus 690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHH
Confidence 33344555666666666666666666666666666666666665444333222 134455556666666666666
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (373)
.+++-+. . |.+ -...+|.+.|++.+|.++--
T Consensus 764 ~KYiprv-~--~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 764 KKYIPRV-G--GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhhhcc-C--ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 6666544 1 111 24455666666666655443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.50 E-value=2.8 Score=32.37 Aligned_cols=85 Identities=9% Similarity=-0.139 Sum_probs=38.2
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC----CChh---HHHHHHHHHHhCCChH
Q 047393 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE----KNSL---SWTFIISARVNHGHPS 129 (373)
Q Consensus 57 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~d~~---~~~~li~~~~~~g~~~ 129 (373)
+..|+++.|.+.|.+.+..- +.+...||.-..++.-.|+.++|++=+++..+ .... +|---...|...|+.+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 34455555555555444321 23344555555555555555555444433321 0111 1111122345556666
Q ss_pred HHHHHHHHHHHcC
Q 047393 130 EALDLFKDKQWRY 142 (373)
Q Consensus 130 ~A~~l~~~m~~~g 142 (373)
.|..=|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6666666655554
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.40 E-value=0.34 Score=27.98 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 218 IWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+|+.|...|.+.|++++|.+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777788888888888888887543
No 256
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.37 E-value=0.39 Score=27.01 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 218 IWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
+|..+...|...|+.++|...|++..+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888888888888888888887764
No 257
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.37 E-value=0.15 Score=29.19 Aligned_cols=27 Identities=15% Similarity=-0.011 Sum_probs=15.6
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 047393 210 VPGKL-CPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 210 ~~~~p-~~~~~~~li~~~~~~g~~~~A~ 236 (373)
++..| ++..|+.+...|...|++++|.
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444 4556666666666666666654
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.32 E-value=0.54 Score=27.12 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQ 38 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~ 38 (373)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887744
No 259
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=2.1 Score=38.15 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=74.0
Q ss_pred cCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-C--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 047393 75 RGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-K--------NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145 (373)
Q Consensus 75 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 145 (373)
.|.+....+-..++..-....++++++..+-++.. | ..++| +..+ -.-++++++.++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHH-HccChHHHHHHHhCcchhcccc
Confidence 45566667777777777777889999888766652 2 22333 2222 3346788998888888999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHH
Q 047393 146 NPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 146 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 176 (373)
|.++++.+|+.+.+.+++.+|.++...|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777654
No 260
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.30 E-value=9.1 Score=33.21 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 189 MVEALGRAGMFEEVLEFIKGIVPGKLC----PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+..-|.+.|.+-.|..-+++|++.-|+ ....-.|..+|...|..++|.+.-+-+..-.|++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 446777888888888888886663333 2466677788888999999888877777666665
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.04 E-value=7.3 Score=31.62 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC--CHHHHHHHHccCC
Q 047393 31 HELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG--KIDDADLAFKSTP 108 (373)
Q Consensus 31 ~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~ 108 (373)
.+.++.+.+.|++|+...+..++..+.+.|+...-. .++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344555556677777777777777777777654433 3335555555443333332222211 1233444444442
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 047393 109 EKNSLSWTFIISARVNHGHPSEALDLFKDK 138 (373)
Q Consensus 109 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 138 (373)
..+..++..+...|++-+|++..+..
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 24455566666777777777666553
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.00 E-value=8.8 Score=38.85 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=60.5
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChh-HHHHHHHHHHhCCChHHHHHH
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSL-SWTFIISARVNHGHPSEALDL 134 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~-~~~~li~~~~~~g~~~~A~~l 134 (373)
+.....+.+-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 3333344444455555556664 44555566777888887777777766665522111 133455566666666666554
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 135 FKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 135 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
-.... -.......++. ..|++++|.++++.+
T Consensus 486 A~k~~-----~he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFK-----KHEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 43322 13333444433 467788888777665
No 263
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.93 E-value=7.9 Score=31.83 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
+..+..-|++.|+.++|.+.|.++.+.-..|.. ..+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444444444444444444444443222222 23334444444455555555444444
No 264
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.81 E-value=0.14 Score=40.44 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=56.4
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHH
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 131 (373)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566777788888888888888776666788888888888888877777777774332 3334556666666666666
Q ss_pred HHHHHH
Q 047393 132 LDLFKD 137 (373)
Q Consensus 132 ~~l~~~ 137 (373)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 655543
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.75 E-value=5 Score=38.20 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=68.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC-C-CCC--HHHHHHHHHHHH
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP-G-KLC--PLIWRTLLLSSR 227 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-~p~--~~~~~~li~~~~ 227 (373)
.+..++-+.|+.++|.+.+++|.+.+.......+...|++++...+..+++..++.+ -. + -|. ..+|+..+--..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k-YdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK-YDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH-hccccCCchHHHHHHHHHHHHH
Confidence 345556678999999999999987643223456778999999999999999999988 54 1 232 357777664444
Q ss_pred HcCC---------------HHHHHHHHHHHhccCCCC
Q 047393 228 VHGD---------------MKLAKYALDKLLELDPGM 249 (373)
Q Consensus 228 ~~g~---------------~~~A~~~~~~m~~~~P~~ 249 (373)
..++ -..|.+.+.+..+.+|-.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 3333 123556777777877766
No 266
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.70 E-value=20 Score=36.01 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047393 144 SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223 (373)
Q Consensus 144 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li 223 (373)
....-|.+--+.-+...|+..+|.++-++. + -||...|--=+.+++..+++++-+++-.. .+ .|.-|.-.+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F-k----ipdKr~~wLk~~aLa~~~kweeLekfAks-kk---sPIGy~PFV 751 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF-K----IPDKRLWWLKLTALADIKKWEELEKFAKS-KK---SPIGYLPFV 751 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc-C----CcchhhHHHHHHHHHhhhhHHHHHHHHhc-cC---CCCCchhHH
Confidence 344445555555666677777777776655 2 46777777777778888888777776666 32 356677777
Q ss_pred HHHHHcCCHHHHHHHHHHHhc
Q 047393 224 LSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+|.+.|+.++|.+.+-+.-.
T Consensus 752 e~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC
Confidence 788888888888777655543
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.58 E-value=1.2 Score=39.32 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.++..++..+..+|+.+.+.+.+++.+...| +...|..++.+|.+.|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4677788999999999999999999777777 789999999999999999999999998876
No 268
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.35 E-value=12 Score=33.10 Aligned_cols=145 Identities=16% Similarity=0.064 Sum_probs=95.1
Q ss_pred HHHHHHHccCCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHH-------HH-------------------cCCCCCHHH
Q 047393 98 DDADLAFKSTPEK--NSLSWTFIISARVNHGHPSEALDLFKDK-------QW-------------------RYTSMNPTT 149 (373)
Q Consensus 98 ~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m-------~~-------------------~g~~p~~~t 149 (373)
.+|+++|.-+.+. ..++-+.+|..+....+..+|...+... +. .++.-|..-
T Consensus 150 ~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e 229 (361)
T COG3947 150 RKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQE 229 (361)
T ss_pred hHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHH
Confidence 4677777665532 3555666777777777777776655443 11 134446666
Q ss_pred HHHHHHHHHc-cCCHHHHHHHHHHhHHHcCCCCC-------------HhHH----HHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 150 FRSALKAYAL-MGLVGEAYRLFLSMEEVYHIEPS-------------EEHY----SIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 150 ~~~ll~~~~~-~g~~~~a~~~~~~m~~~~g~~p~-------------~~~~----~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
|-..+..... ...++++.++...... +.-|+ ..+| +..-..|..+|.+.+|.++.++.+.
T Consensus 230 ~es~~rqi~~inltide~kelv~~ykg--dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 230 YESLARQIEAINLTIDELKELVGQYKG--DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHhhhhhccccCHHHHHHHHHHhcC--CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 6666655433 3456777777766632 33332 1233 4445678889999999999999777
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 212 GKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 212 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
..| +...|-.+++.+...|+--.|.+-++++.+
T Consensus 308 ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 308 LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 666 677888889999999997777777777654
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.26 E-value=7.1 Score=30.20 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=27.7
Q ss_pred HhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047393 90 INSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 140 (373)
+++..|+++.|++.|.+.. ......||.-..++.-.|+.++|++=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455566666666655433 23455556555566556666666555555443
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.06 E-value=4 Score=33.56 Aligned_cols=58 Identities=10% Similarity=-0.069 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHcCCCchHHHHHHHHH
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDS--YSICDILNSCLNPILLNVGTQAQAY 71 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~ 71 (373)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+.-.+++..+.....+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444445555555555555555555443333322 2233444444444454444444443
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.90 E-value=8.1 Score=34.94 Aligned_cols=110 Identities=10% Similarity=-0.065 Sum_probs=45.3
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc---CCCCchhHHHHHHHHhHhcCCHHHHH
Q 047393 25 KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR---GLISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
|++.+|-..++++.+. .+-|...+.-.=.+|.-.|+...-...++.++-. +++....+.....-++..+|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 3344444444444432 2233334444444444444444444444444321 22222222222333344455555555
Q ss_pred HHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 102 LAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 102 ~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
+.-++..+ .|.-+-.+....+-.+|+..++.+..
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 55544332 23333344444444455555554443
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.81 E-value=15 Score=38.88 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=48.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTT--FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 196 (373)
+.+|..+|+|.+|+.+-.++.. .-|... --.|..-+...++.-+|-++..+... .|. -.+..||+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~~-----~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----DPE-----EAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CHH-----HHHHHHhhH
Confidence 4455555666666555554431 112222 24567777788888888887776633 222 346678888
Q ss_pred CCHHHHHHHHHh
Q 047393 197 GMFEEVLEFIKG 208 (373)
Q Consensus 197 g~~~~A~~~~~~ 208 (373)
..+++|.++-..
T Consensus 1040 ~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1040 KEWEEALRVASK 1051 (1265)
T ss_pred hHHHHHHHHHHh
Confidence 889999888776
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.36 E-value=0.4 Score=27.00 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
+|..+...|...|++++|+..|++++++.|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344455555555555555555555444333
No 274
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.15 E-value=4.1 Score=38.27 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=90.1
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCc------hhHHHHHHHHhHhcCCHHHHHHHHccCCCC-ChhHHHHHHHHH--HhCC
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISH------PAVGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFIISAR--VNHG 126 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-d~~~~~~li~~~--~~~g 126 (373)
+.+.+++.+|.++|.+..+.. ..+ ....+-++++|... +++.....+.+..+. ....|-.+..+. -+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 356788999999999885542 122 23446677887654 455555555444421 234455555443 4678
Q ss_pred ChHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHc---CCCCCHhHHHHH
Q 047393 127 HPSEALDLFKDKQWR--YTSM------------NPTTFRSALKAYALMGLVGEAYRLFLSMEEVY---HIEPSEEHYSIM 189 (373)
Q Consensus 127 ~~~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~~~~l 189 (373)
.+.+|.+.+..-.+. +-.| |-.-=+..++.+...|++.++..++.++..+. .+..+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888888766554 3222 11222456677888999999999999886542 123688899988
Q ss_pred HHHHHhcCC
Q 047393 190 VEALGRAGM 198 (373)
Q Consensus 190 i~~~~~~g~ 198 (373)
+-++++.--
T Consensus 174 vlmlsrSYf 182 (549)
T PF07079_consen 174 VLMLSRSYF 182 (549)
T ss_pred HHHHhHHHH
Confidence 888877533
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.88 E-value=16 Score=32.41 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=68.7
Q ss_pred HHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
......|++.+|..+|+.... .+...--.++.+|...|+.+.|..++..+-..--.........-|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777788777766542 23445556777788888888888888776443211122222222333444444444
Q ss_pred HHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 166 AYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
...+-++... .| |...-..+...+...|+.++|.+.+-.+++
T Consensus 222 ~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444422 34 566666677777777888877776665454
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=9.5 Score=34.50 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=93.3
Q ss_pred cCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHH--HHHHHHHHccCCHHHH
Q 047393 94 CGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP--TTF--RSALKAYALMGLVGEA 166 (373)
Q Consensus 94 ~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~--~~ll~~~~~~g~~~~a 166 (373)
.|++.+|-..++++.+ .|..+++--=.+|.-.|+.+.-...+++..-. ..||. .+| .....++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4666666666666653 37777877778888888888888888887644 12232 233 3334445568888888
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC------PLIWRTLLLSSRVHGDMKLAKYALD 240 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~ 240 (373)
++.-++..+-. +-|.-.-.++...+--.|++.++.+++.+ -+-..+ ...|--..-.+...+.++.|.++|+
T Consensus 195 Ek~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~-ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 195 EKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYK-TEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHh-cccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 88777654321 23555556666777778899999998887 441111 1223333334455678999999998
Q ss_pred HHh
Q 047393 241 KLL 243 (373)
Q Consensus 241 ~m~ 243 (373)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 744
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.33 E-value=12 Score=30.11 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=24.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPT---TFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
+.++.+++..++..+.-. +|... ++-..+ +.+.|++++|.++|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHh
Confidence 445566666666655443 33332 222222 345566666666666663
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.22 E-value=0.41 Score=37.73 Aligned_cols=86 Identities=10% Similarity=-0.057 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047393 16 LLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG 95 (373)
Q Consensus 16 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 95 (373)
.+|+.+.+.+.+....+.++.+...+..-+....+.++..|++.+..+...++++. .+..-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35677788889999999999998776666788889999999999877777777651 12233345666667777
Q ss_pred CHHHHHHHHccCC
Q 047393 96 KIDDADLAFKSTP 108 (373)
Q Consensus 96 ~~~~A~~~~~~m~ 108 (373)
.+++|.-++.++.
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 7777777666654
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.20 E-value=7.6 Score=31.66 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=56.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHh-HHHHHH--HHHHhcCC
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSMNPT-TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE-HYSIMV--EALGRAGM 198 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li--~~~~~~g~ 198 (373)
.+.|..++|+.-|..+.+.|..-=.+ .-.-+.......|+...|...|+++-... -.|-.. -...|= -.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhcccc
Confidence 34455555655565555554321111 11111223345566666666666664331 112111 111111 22345666
Q ss_pred HHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 199 FEEVLEFIKGIVPGKLCP---LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+++...-.+- +....++ ..-..|--+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvep-La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEP-LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhh-ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666655 4322222 2233444455567777777777777665
No 280
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.01 E-value=26 Score=33.61 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=131.1
Q ss_pred CChhHHHHHHHHHHHcC------CHhHHHHHHHHHHhc-CCCCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc
Q 047393 9 DVEIPWNLLLKACIKAK------DYEMVHELLERIQLC-CGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISH 80 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g------~~~~A~~l~~~m~~~-g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 80 (373)
|+...|+..|..|...- .+.....+|+..... +..|+. .-|..+...++..+...++. ..+...++.-+
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a---~~l~~e~f~~s 389 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA---VKLTTELFRDS 389 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH---HHhhHHHhcch
Confidence 55667777777765432 455666677766654 355543 45777777676665543332 22223344556
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHc----cC----CCCChhHHHHHHHHHHhCCC-hHH-HHHHHHHHHHcCCCCCHHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFK----ST----PEKNSLSWTFIISARVNHGH-PSE-ALDLFKDKQWRYTSMNPTTF 150 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~----~m----~~~d~~~~~~li~~~~~~g~-~~~-A~~l~~~m~~~g~~p~~~t~ 150 (373)
...|-.=+....++.. ++.-+|. .. ..+-...|++.. .|+ +.. .+.++-.....-..|+..|+
T Consensus 390 ~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl 462 (568)
T KOG2396|consen 390 GKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTL 462 (568)
T ss_pred HHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeeh
Confidence 6666554444443211 2222222 22 223445555554 122 221 22233333333346677666
Q ss_pred H-HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHH---HhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHH
Q 047393 151 R-SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL---GRAGMFEEVLEFIKGIVP-GKLCPLIWRTLLLS 225 (373)
Q Consensus 151 ~-~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~ 225 (373)
. .++..+-+.|-..+|...+..+.. --+|+...|--+|..= ..+| +.-+.++++.|.. ...|+..|--.+.-
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKE 539 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHh
Confidence 4 667777788888888888888843 2355777777777532 3344 7778888888655 55678888887777
Q ss_pred HHHcCCHHHHHHHHHHHhc-cCCC
Q 047393 226 SRVHGDMKLAKYALDKLLE-LDPG 248 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~-~~P~ 248 (373)
=..+|..+.+-.++-++.+ ++|.
T Consensus 540 e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred hccCCCcccccHHHHHHHHhhChh
Confidence 7788888888887776655 5553
No 281
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.01 E-value=8.6 Score=28.15 Aligned_cols=88 Identities=11% Similarity=-0.026 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047393 61 LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 61 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 140 (373)
..++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356777777776554422 22233333456778899999999999998899999877754 456777777777777877
Q ss_pred cCCCCCHHHHHH
Q 047393 141 RYTSMNPTTFRS 152 (373)
Q Consensus 141 ~g~~p~~~t~~~ 152 (373)
+| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 282
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=14 Score=34.39 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=29.2
Q ss_pred HHhCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 122 RVNHGHPSEALDLFKDKQWR---YTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 122 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
..+.|++.+|.+.+.+.+.. +..|+...|........+.|++++|+.--++.
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 34556666666666665542 33445555555555556666666665555444
No 283
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.39 E-value=4.4 Score=29.40 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
++.+-++.+....+.|+.....+.++||.+.+++..|.++++..+.+. ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 444455555556678888888888888888888888888888775442 334456665554
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.36 E-value=19 Score=31.34 Aligned_cols=57 Identities=21% Similarity=0.134 Sum_probs=38.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
.+.+.|.+.|.+..|..-+++|.+.+.-.+ .....-.+..+|-..|..++|...-.-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 344568888999999999998877642222 123444566788888888887776554
No 285
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.23 E-value=16 Score=32.41 Aligned_cols=83 Identities=8% Similarity=0.029 Sum_probs=39.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh----HHHcCCCCCHhH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWR-YTSMNPTTFRSALKAYALMGLVGEAYRLFLSM----EEVYHIEPSEEH 185 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m----~~~~g~~p~~~~ 185 (373)
+..+--.+|..+++.++|.+-.++++..... +..-|..-|..+|..-...|+..-..++..+= .+++++..+...
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L 280 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDEL 280 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHH
Confidence 3344444555555555555555554443332 33334455555555555555555544444431 133455545444
Q ss_pred HHHHHHHH
Q 047393 186 YSIMVEAL 193 (373)
Q Consensus 186 ~~~li~~~ 193 (373)
-..+-..+
T Consensus 281 ~~~L~~LF 288 (292)
T PF13929_consen 281 RSQLSELF 288 (292)
T ss_pred HHHHHHHH
Confidence 44444433
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.05 E-value=4.5 Score=29.32 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCCCchhHHHHHHH
Q 047393 28 EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMT-KRGLISHPAVGNCLIN 89 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~li~ 89 (373)
-++.+-++.+....+.|++....+.++||.|.+++..|.++++-.+ +.| .+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3455556666666778888888888888888888888888888775 333 24446665553
No 287
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.75 E-value=10 Score=29.98 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=45.5
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCC---------CCChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047393 85 NCLININSRCGKIDDADLAFKSTP---------EKNSLSWTFIISARVNHGH-PSEALDLFKDKQWRYTSMNPTTFRSAL 154 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~---------~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 154 (373)
|+++.-....+.+.....+++.+. ..|..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455554444455555554444442 1255667777777755544 223566777777767777777777777
Q ss_pred HHHHcc
Q 047393 155 KAYALM 160 (373)
Q Consensus 155 ~~~~~~ 160 (373)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776554
No 288
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.63 E-value=1.8 Score=25.37 Aligned_cols=29 Identities=31% Similarity=0.205 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQL 39 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 39 (373)
..+++.|...|...|++++|++++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888877654
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.55 E-value=6.1 Score=29.00 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
+...-++.+....+.|+.....+.+.||.+.+++..|.++++.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3444455555566788888888888888888888888888888865533 33336766664
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.38 E-value=0.96 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=14.5
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHH
Q 047393 78 ISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
|-|..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334556666666666666666654
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.34 E-value=1.3 Score=24.45 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 221 TLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+..++.+.|+.++|.+.|+++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45566777888888888888888877753
No 292
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.95 E-value=12 Score=33.09 Aligned_cols=114 Identities=14% Similarity=0.216 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc-c-CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 047393 127 HPSEALDLFKDKQW-RYTSMNPTTFRSALKAYAL-M-GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203 (373)
Q Consensus 127 ~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~-~-g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 203 (373)
...+|+.+|+...- ..+--|..+...+++.... . .....-.++.+-+...+|-.++..+...+|+.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35677777763322 2345577777777776554 2 2334444555555566667888889999999999999999999
Q ss_pred HHHHhhCCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047393 204 EFIKGIVPG-KL--CPLIWRTLLLSSRVHGDMKLAKYALD 240 (373)
Q Consensus 204 ~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~ 240 (373)
++++.-.+. .| |...|..+|+.-...|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 999885542 23 78999999999999999877666554
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=85.72 E-value=33 Score=32.62 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=83.0
Q ss_pred hHH--HHHHHHHHhCC-----ChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHc---------cCCHHHHHHHHHHhH
Q 047393 113 LSW--TFIISARVNHG-----HPSEALDLFKDKQW-RYTSMNP-TTFRSALKAYAL---------MGLVGEAYRLFLSME 174 (373)
Q Consensus 113 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~m~ 174 (373)
..| ...+.+....- ..+.|+.+|.+... ..+.|+- ..|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55565554421 23567778888762 2345543 333333222211 223445555555554
Q ss_pred HHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 175 EVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 175 ~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+ +.| |...-..+..++.-.|+.+.|..+|+++....||. .+|....-.+.-.|+.++|.+.+++..+++|..
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 3 333 66666666666677788999999999977788864 455555555666899999999999988888744
No 294
>PRK11906 transcriptional regulator; Provisional
Probab=85.55 E-value=34 Score=32.56 Aligned_cols=141 Identities=11% Similarity=-0.028 Sum_probs=86.1
Q ss_pred CHHHHHHHHccCC---CCC---hhHHHHHHHHHHh---------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047393 96 KIDDADLAFKSTP---EKN---SLSWTFIISARVN---------HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160 (373)
Q Consensus 96 ~~~~A~~~~~~m~---~~d---~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 160 (373)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++..+.+ +-|......+-.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3566777787665 333 4444444333321 223345666666666654 45677777777777777
Q ss_pred CCHHHHHHHHHHhHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHHcCCHHHHH
Q 047393 161 GLVGEAYRLFLSMEEVYHIEPSE-EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL---IWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 161 g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~ 236 (373)
|+.+.|..+|++.. .+.||. .+|...-....-+|+.++|.+.++++++..|... .....++.|+. ...+.|.
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 88999999999874 346654 4444444445568999999999998888777442 22222334443 3556677
Q ss_pred HHHHH
Q 047393 237 YALDK 241 (373)
Q Consensus 237 ~~~~~ 241 (373)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 66643
No 295
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.50 E-value=30 Score=31.84 Aligned_cols=223 Identities=11% Similarity=-0.024 Sum_probs=115.7
Q ss_pred HHcCCHhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CCCCc---hhHHHHHHHHhHhc
Q 047393 22 IKAKDYEMVHELLERIQLCC--GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR--GLISH---PAVGNCLININSRC 94 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~ 94 (373)
.+..+.++|+..|.+-...- ..---.+|..+..+.++.|..++++..--.-++. ..... ...|-.|-.++-+-
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776655420 0111134555666667766666554322111110 00111 22333444444444
Q ss_pred CCHHHHHHHHccC---C---CC-C-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccC
Q 047393 95 GKIDDADLAFKST---P---EK-N-SLSWTFIISARVNHGHPSEALDLFKDKQWRY-----TSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 95 g~~~~A~~~~~~m---~---~~-d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~g 161 (373)
.++.+++.+=..- + .. + -...-++-.++.-.+.++++++.|+...+-- -......|..+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444332211 1 10 1 1222335556666677888888887764421 1123457777777788888
Q ss_pred CHHHHHHHHHHhH---HHcCCCCCHhHHH-----HHHHHHHhcCCHHHHHHHHHhhCC---CCCC----HHHHHHHHHHH
Q 047393 162 LVGEAYRLFLSME---EVYHIEPSEEHYS-----IMVEALGRAGMFEEVLEFIKGIVP---GKLC----PLIWRTLLLSS 226 (373)
Q Consensus 162 ~~~~a~~~~~~m~---~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~---~~p~----~~~~~~li~~~ 226 (373)
+.++|.-+..... +.+++.-=..-|. .|.-++...|++.+|.+.-+++++ ..-| ....-.+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 8887765544332 2223221111222 233456667888888888777665 1123 24555667778
Q ss_pred HHcCCHHHHHHHHHHHhc
Q 047393 227 RVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~ 244 (373)
...|+.|.|..-|+....
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 888888888777776544
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.25 E-value=12 Score=29.65 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=8.6
Q ss_pred HhCCChHHHHHHHHHHHHc
Q 047393 123 VNHGHPSEALDLFKDKQWR 141 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~ 141 (373)
...|+|++|..+|++..+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3344444444444444433
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.20 E-value=19 Score=29.28 Aligned_cols=124 Identities=16% Similarity=0.057 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
.|+...|..+|..+.+.|++... .++...++-||.......+-.+.. ....+.++=-+|.++= ...+..+
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL----~~~~~~i 95 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL----GTAYEEI 95 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh----hhhHHHH
Confidence 36667999999999999987665 456667777777766655544443 3344555555554430 1256678
Q ss_pred HHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047393 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 141 (373)
+..+...|++-+|.+..+....-+...-..++.+-.+.++..-=..+|+-..++
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999998876555556666777777777766555555555443
No 298
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.16 E-value=9.9 Score=31.78 Aligned_cols=75 Identities=5% Similarity=-0.129 Sum_probs=51.6
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhCCCh
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP-------EKNSLSWTFIISARVNHGHP 128 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~d~~~~~~li~~~~~~g~~ 128 (373)
..+.|+ ++|.+.|-.+...+.--++...-+|...|.+ .+.++|..++-+.. +.|+..+.+|++.|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455555 5677777777777766666677777766664 45677766665432 34778888888888888888
Q ss_pred HHHH
Q 047393 129 SEAL 132 (373)
Q Consensus 129 ~~A~ 132 (373)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.97 E-value=24 Score=30.35 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=74.4
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
++-.+.+++|-+++.+.-.. + .=...|+.-..+|++. |.-..+.-.+.|..+-..-..-+.+.+++++|.+.+
T Consensus 24 fgg~~k~eeAadl~~~Aan~-y-klaK~w~~AG~aflka-----A~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL 96 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANM-Y-KLAKNWSAAGDAFLKA-----ADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCL 96 (288)
T ss_pred cCCCcchHHHHHHHHHHHHH-H-HHHHhHHHHHHHHHHH-----HHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHH
Confidence 34445778888777664210 0 0011233333333321 111111112334433333333344555777777766
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
+.. |..|...|++..|-+...++-+-+ ..+..-+..-|..|- .|-++|.. -+ .+
T Consensus 97 ~~a---------------ieIyt~~Grf~~aAk~~~~iaEiy--Esdl~d~ekaI~~YE------~Aae~yk~-ee--s~ 150 (288)
T KOG1586|consen 97 EKA---------------IEIYTDMGRFTMAAKHHIEIAEIY--ESDLQDFEKAIAHYE------QAAEYYKG-EE--SV 150 (288)
T ss_pred HHH---------------HHHHHhhhHHHHHHhhhhhHHHHH--hhhHHHHHHHHHHHH------HHHHHHcc-hh--hh
Confidence 543 456677777777776666654432 334344444444433 34444433 11 11
Q ss_pred HHHHHHHHH---HHHHcCCHHHHHHHHHHHhc
Q 047393 216 PLIWRTLLL---SSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 216 ~~~~~~li~---~~~~~g~~~~A~~~~~~m~~ 244 (373)
...--++++ --+..+++.+|+++|+++..
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222 22456788888888888876
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.77 E-value=1.1 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 186 YSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
+..+-..+.+.|++++|.+.|++++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444455555555555555555433
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=3.4 Score=36.88 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=58.0
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCC---GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN 85 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 85 (373)
..+++-..++..-.+..+++.+...+-+++... ..|+.. -.++++.|.+ -+++++..++..=+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence 344444555554455666777777666665421 122222 1223333332 25567777777777778888888888
Q ss_pred HHHHHhHhcCCHHHHHHHHccCC
Q 047393 86 CLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
.+|+.+.+.+++.+|.++.-.|.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 88888888888777776665544
No 302
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=84.68 E-value=29 Score=31.06 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPSE----EHYSIMVEALGRAGMFEEVLEFIKG-IVPGKLCPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~ 234 (373)
...+++.....++-.++.++ |+. ..|.+++++--- .+-.++... ++ ....+|.-|+.+++..|+.+.
T Consensus 268 e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveW----nKkeelva~qal---rhlK~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEW----NKKEELVAEQAL---RHLKQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhh----chHHHHHHHHHH---HHHHhhhHHHHHHhcCChHHH
Confidence 33444444444433344343 444 355565554433 332222221 11 134578999999999999875
Q ss_pred HH
Q 047393 235 AK 236 (373)
Q Consensus 235 A~ 236 (373)
..
T Consensus 340 ~L 341 (412)
T KOG2297|consen 340 EL 341 (412)
T ss_pred HH
Confidence 44
No 303
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.39 E-value=2.1 Score=22.49 Aligned_cols=31 Identities=32% Similarity=0.221 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 218 IWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.|..+...+...|+++.|...++..+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666677777777777777777666553
No 304
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=84.33 E-value=22 Score=29.46 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=52.6
Q ss_pred ccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC-----
Q 047393 105 KSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI----- 179 (373)
Q Consensus 105 ~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~----- 179 (373)
++-+++-.+.|.....+-++.-+.+++-+.+ =...=.+++..|-+.-++.++.++++.|.+ ..+
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~----------LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~L 168 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTL----------LGRIGISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSL 168 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhc
Confidence 3333444555665665555554444433322 112334566677788888888888887733 222
Q ss_pred ---------CCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 180 ---------EPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 180 ---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
.+--...|.....+.+.|.+|.|..++++
T Consensus 169 KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 169 KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 23334556666666666666666666665
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.12 E-value=2.6 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQ 139 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 139 (373)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555666666655555543
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.71 E-value=6.6 Score=28.79 Aligned_cols=60 Identities=7% Similarity=-0.019 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 29 MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 29 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+..+-++.+....+.|++....+.+++|.|.+++..|.++++-.+.. +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44555566666678888888888889999999999998888887443 2233336766654
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.44 E-value=32 Score=30.55 Aligned_cols=218 Identities=11% Similarity=-0.012 Sum_probs=121.2
Q ss_pred HHcCCHhHHHHHHHHHHhcC--CCCCHH------HHHHHHHHHcCCCchHHHHHHHHHHHHc--------CCCCc-----
Q 047393 22 IKAKDYEMVHELLERIQLCC--GFIDSY------SICDILNSCLNPILLNVGTQAQAYMTKR--------GLISH----- 80 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~g--~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------g~~~~----- 80 (373)
.+.|+++.|..++.+....- ..|+.. .|+.-...+.+..+++.|..++++..+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999999987642 334432 2333333333333888887777765433 22233
Q ss_pred hhHHHHHHHHhHhcCCHH---HHHHHHccCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047393 81 PAVGNCLININSRCGKID---DADLAFKSTPE--KN-SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 154 (373)
..+...++.+|...+..+ +|.++++.+.. |+ +..+-.-+..+.+.++.+++.+.+.+|...- .-....+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 346677888888877755 45555555532 33 5566566777777899999999999998762 21333444444
Q ss_pred H---HHHccCCHHHHHHHHHHhHHHcCCCCCHh-HHH-HHHHH-HH--hc------CCHHHHHHHHHhh---CCCCCCHH
Q 047393 155 K---AYALMGLVGEAYRLFLSMEEVYHIEPSEE-HYS-IMVEA-LG--RA------GMFEEVLEFIKGI---VPGKLCPL 217 (373)
Q Consensus 155 ~---~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~-~li~~-~~--~~------g~~~~A~~~~~~~---~~~~p~~~ 217 (373)
. -+..... ..|...+..+... .+.|... ... .++.. +. +. ++++...++++.. .....+..
T Consensus 163 ~~i~~l~~~~~-~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhhCc-HHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 4 3344444 3444555444333 3344332 111 12211 11 11 1244555555531 11122332
Q ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 218 --------IWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 218 --------~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
.|+. ...+.+.++++.|.+.|+-..
T Consensus 241 ~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 3443 345667889999999988543
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.58 E-value=33 Score=33.71 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=79.6
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 047393 23 KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 102 (373)
-.|+++.|..++-... ...-+.+..-+.+.|-.++|+++- ..||. -| ....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHH
Confidence 3566666655433222 223344445555555555554332 12221 11 22345677777776
Q ss_pred HHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC
Q 047393 103 AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS 182 (373)
Q Consensus 103 ~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 182 (373)
+..+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+.-.|+-+....+=+...++ |. -|
T Consensus 659 la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~-g~-~N 725 (794)
T KOG0276|consen 659 LAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ-GK-NN 725 (794)
T ss_pred HHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh-cc-cc
Confidence 65443 3556677777777777777777777765432 344555555666655444444444333 32 22
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
.-.-+|...|+++++.+++.+
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHh
Confidence 223345566777777777766
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.48 E-value=4 Score=36.89 Aligned_cols=86 Identities=16% Similarity=0.037 Sum_probs=54.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc-
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA- 196 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~- 196 (373)
.+.|.+.|.+++|++.|.+-... .| |.+++..-..+|.+...+..|+.=...... .-...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 45678888888888888765543 56 788888888888888887766544443321 112334455543
Q ss_pred ------CCHHHHHHHHHhhCCCCCC
Q 047393 197 ------GMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 197 ------g~~~~A~~~~~~~~~~~p~ 215 (373)
|+..+|.+=++.+++++|+
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 5555565555555556676
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.81 E-value=25 Score=33.68 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 047393 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (373)
....+|+....+ ..-|...|..-+..|-+.+.+.+...+|.+|...++-.||..+|.+.-. |-..-+++.|..+|.+.
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHH
Confidence 344555555443 3448888999998888888899999999999988888888777765443 33344489999999887
Q ss_pred CCCCCC-HHHHHHHH
Q 047393 210 VPGKLC-PLIWRTLL 223 (373)
Q Consensus 210 ~~~~p~-~~~~~~li 223 (373)
++..|+ +..|-...
T Consensus 167 LR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYF 181 (568)
T ss_pred hhcCCCChHHHHHHH
Confidence 887775 44444433
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.73 E-value=52 Score=31.79 Aligned_cols=202 Identities=10% Similarity=0.060 Sum_probs=115.5
Q ss_pred CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHH
Q 047393 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIIS 120 (373)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~ 120 (373)
.|.....+++..+++...+.-++.+-.+|...| -+...|-.++..|..+ .-+.-..+++++.+ .|++--..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355566677777777777777777777777665 4566677777777776 44555666665443 23444444444
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh
Q 047393 121 ARVNHGHPSEALDLFKDKQWRYTS-----MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 195 (373)
-|-+ ++.+.+...|.+...+=++ .-...|.-+... -..+.+....+...+....|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 6666666667666544211 011234444332 1345666666666666665555555666666666777
Q ss_pred cCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHhccCCCCcc
Q 047393 196 AGMFEEVLEFIKGIVP-GKLCPLIWRTLLLSSRV--------------------HGDMKLAKYALDKLLELDPGMYV 251 (373)
Q Consensus 196 ~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~~~~--------------------~g~~~~A~~~~~~m~~~~P~~y~ 251 (373)
..++++|.+++...++ -..|.-.-..++.-+.. -.++.++..=|+.....+..+|+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFV 294 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFV 294 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceE
Confidence 7777777777776444 12233333334443332 33566666667776666655533
No 312
>PRK09687 putative lyase; Provisional
Probab=81.60 E-value=38 Score=30.16 Aligned_cols=226 Identities=12% Similarity=-0.091 Sum_probs=152.5
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCCCchh
Q 047393 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL----NVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 7 ~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~~~~~ 82 (373)
..+|....-..+.++...|. .++...+..+.. .+|...-...+.++++.|+. .++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 35778788888888988886 445555555554 35666666777778888763 5677777766433 46666
Q ss_pred HHHHHHHHhHhcCC-----HHHHHHHHcc-CCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047393 83 VGNCLININSRCGK-----IDDADLAFKS-TPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156 (373)
Q Consensus 83 ~~~~li~~~~~~g~-----~~~A~~~~~~-m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 156 (373)
+-...+.++...+. ...+...+.. +..++..+-...+.++++.|+ .+|...+-.+.+. +|...-...+.+
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 66666666665542 2334444433 345577777778888888886 5677777777753 566666777777
Q ss_pred HHccC-CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047393 157 YALMG-LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLA 235 (373)
Q Consensus 157 ~~~~g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 235 (373)
+++.+ ....+...+..+.. .++..+....+.++++.|.. .|...+-+.+. .+++ ....+.++...|.. +|
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TL 253 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hH
Confidence 77653 23355666655543 56778888899999999985 56666655466 4443 45678999999995 68
Q ss_pred HHHHHHHhccCCCCcc
Q 047393 236 KYALDKLLELDPGMYV 251 (373)
Q Consensus 236 ~~~~~~m~~~~P~~y~ 251 (373)
...+..+.+..||.++
T Consensus 254 ~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 254 LPVLDTLLYKFDDNEI 269 (280)
T ss_pred HHHHHHHHhhCCChhH
Confidence 9999999887776633
No 313
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.20 E-value=25 Score=27.70 Aligned_cols=80 Identities=9% Similarity=-0.081 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFI---DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
.+..-.....+.|++++|.+.|+.+..+ .+. ....-..++.++-+.+++++|...+++.++..-.--..-|-..+.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3333444456788888888888888764 222 234455677788888888888888888877653222334444444
Q ss_pred HhHh
Q 047393 90 INSR 93 (373)
Q Consensus 90 ~~~~ 93 (373)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 4443
No 314
>PRK09687 putative lyase; Provisional
Probab=81.16 E-value=40 Score=30.06 Aligned_cols=186 Identities=11% Similarity=0.016 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC----HHHHHHHHccC--CCCChhHHHH
Q 047393 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK----IDDADLAFKST--PEKNSLSWTF 117 (373)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m--~~~d~~~~~~ 117 (373)
+|.......+.++...|..+ +...+..+.+ .+|...-...+.++++.|+ .+++...+..+ ..++...-..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHH
Confidence 56666666667776666533 3333333333 3455555556666666665 24566666655 4566666666
Q ss_pred HHHHHHhCCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH
Q 047393 118 IISARVNHGHP-----SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 118 li~~~~~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 192 (373)
.+.+++..+.. .++.+.+..... .++..+=...+.++++.|+. .+...+-.+.+ .+|..+-...+.+
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~----d~~~~VR~~A~~a 182 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK----DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc----CCCHHHHHHHHHH
Confidence 66666655421 233333333332 33555556677777777764 44444444433 3455555666666
Q ss_pred HHhcC-CHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 193 LGRAG-MFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 193 ~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
+++.+ ....+...+..++. .++..+-...+.++.+.|+. .|...+-...
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L 232 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ-DKNEEIRIEAIIGLALRKDK-RVLSVLIKEL 232 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHccCCh-hHHHHHHHHH
Confidence 66653 23456666655454 66666667777777777764 3444433333
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.29 E-value=13 Score=23.74 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 221 TLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
-+.-++.+.|++++|.+..+.+.+++|++
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 45668899999999999999999999866
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.83 E-value=9.2 Score=34.66 Aligned_cols=77 Identities=14% Similarity=0.019 Sum_probs=49.9
Q ss_pred HHhHhcCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
+-|.+.|++++|+..|..-. .| |.++|..-..+|.+..++..|..=-...... | ...+.+|++.+....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQARE 176 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHHHH
Confidence 45788899999999997655 34 8888888888999888888776544433322 1 123455665554444
Q ss_pred HHHHHHHh
Q 047393 166 AYRLFLSM 173 (373)
Q Consensus 166 a~~~~~~m 173 (373)
++....+.
T Consensus 177 ~Lg~~~EA 184 (536)
T KOG4648|consen 177 SLGNNMEA 184 (536)
T ss_pred HHhhHHHH
Confidence 44444444
No 317
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.52 E-value=41 Score=29.22 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
..|---..+|-.+.++++|..-+.+..+. ..-+...|.. ....++|--+.++|.+. +--+..|+--..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34666677888899999999887776631 1222222211 12344455555555432 12234566666777
Q ss_pred HhcCCHHHHHHHHccCC------CCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047393 92 SRCGKIDDADLAFKSTP------EKN--SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~------~~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 163 (373)
..+|.++.|-..+++.- .|| ...|.--+......++...|.+++.+. -+.+.+...+
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~---------------sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC---------------SRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh---------------hhHhhhhHHh
Confidence 77777666555544321 222 234444445555555555555555443 2334444444
Q ss_pred HHHHHHHHHhH---HHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHH
Q 047393 164 GEAYRLFLSME---EVYHIEPSE-EHYSIMVEALGRAGMFEEVLEFIKGIVP----GKL-CPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 164 ~~a~~~~~~m~---~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~ 234 (373)
++|-..+..-. ....--|+. ..|-+.|-.+.-..++..|.+.++.--. ..| +..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 44443333211 000112232 4455666667777778888888876222 222 456777777776 4567777
Q ss_pred HHHHHH
Q 047393 235 AKYALD 240 (373)
Q Consensus 235 A~~~~~ 240 (373)
+.+++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 766543
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.35 E-value=50 Score=30.08 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=48.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 181 PSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK-----LCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 181 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
....+|..+...+.+.|+++.|...+.++.... ..+...-.-.+.+...|+.++|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999998855422 1445555567777888999999998888776
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.89 E-value=11 Score=34.46 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=18.7
Q ss_pred EEeeccccCChhHHHHHHHhHhCceEEEe
Q 047393 319 VIKSVGMCGYSHSACRFMSTIIERELVVK 347 (373)
Q Consensus 319 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 347 (373)
+..-++.+|..+.|+..+.-+++-.+..|
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 33455667777777777777777655433
No 320
>PRK13342 recombination factor protein RarA; Reviewed
Probab=78.40 E-value=62 Score=30.66 Aligned_cols=47 Identities=17% Similarity=-0.055 Sum_probs=29.7
Q ss_pred HHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047393 114 SWTFIISARVN---HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160 (373)
Q Consensus 114 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 160 (373)
.+..+++++.+ .++++.|+.++..|.+.|..|....-..++.++-..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34445555544 477888888888888888777655555554444333
No 321
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.05 E-value=27 Score=32.88 Aligned_cols=172 Identities=9% Similarity=-0.093 Sum_probs=86.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh--HHHHHHHHhHh
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYS--ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSR 93 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~ 93 (373)
+..-++.|+.+-+.. +.+.|..|+... ..+.+..+++.|+.+ +.+.+.+.|..|+.. ...+.+...++
T Consensus 6 L~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 334456677655444 445676665432 233445555667765 444555667666533 12345666777
Q ss_pred cCCHHHHHHHHccCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHH
Q 047393 94 CGKIDDADLAFKSTPEKN----SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALMGLVGEAY 167 (373)
Q Consensus 94 ~g~~~~A~~~~~~m~~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~ 167 (373)
.|+.+.+..+++.....+ ..-+ +.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.+.
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 888888888887544221 1112 223333445554 345555566666543221 23344445677776655
Q ss_pred HHHHHhHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 168 RLFLSMEEVYHIEPSE---EHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
.+++. |..++. .-. +.+...+..|+.+-+.-+++.
T Consensus 153 ~Ll~~-----g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 153 LLIDH-----KACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred HHHhc-----CCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 55432 333221 111 223334455666655555543
No 322
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.77 E-value=29 Score=30.64 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=60.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh
Q 047393 118 IISARVNHGHPSEALDLFKDKQWR--YTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 195 (373)
=|.+++..|+|.+++...-+-.+. .++|. ..-.-|-.|++.|.+..+.++-....+. .-.-+...|.++++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHH
Confidence 478899999999988766554433 23443 3444455578999999888888877553 112233457777777665
Q ss_pred -----cCCHHHHHHHHHh
Q 047393 196 -----AGMFEEVLEFIKG 208 (373)
Q Consensus 196 -----~g~~~~A~~~~~~ 208 (373)
.|.+++|+++...
T Consensus 166 ~VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHHhccccHHHHHHHHhc
Confidence 6999999998855
No 323
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.75 E-value=24 Score=29.59 Aligned_cols=91 Identities=18% Similarity=0.026 Sum_probs=63.6
Q ss_pred HHccCCHHHHHHHHHHhHHHcCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcC
Q 047393 157 YALMGLVGEAYRLFLSMEEVYHIEPSE-----EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHG 230 (373)
Q Consensus 157 ~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g 230 (373)
+.+.|++++|..-|...... +++.. ..|..=..++.+.+.++.|.+-..+++.+.|.. .....=..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45678888888888887654 33322 233333456777888888888888877766632 23333345777888
Q ss_pred CHHHHHHHHHHHhccCCCC
Q 047393 231 DMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 231 ~~~~A~~~~~~m~~~~P~~ 249 (373)
.+++|..=|+.+.+.+|..
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 9999999999999988855
No 324
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.56 E-value=33 Score=27.09 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcC---C--CCCHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCCCchhHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCC---G--FIDSYSICDILNSCLNPIL-LNVGTQAQAYMTKRGLISHPAVGN 85 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g---~--~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~ 85 (373)
...|.++.-.+..+++...+.+++.+..-. + ..+..+|.+++++.++... --.+..+|+.|++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346777777777788887777777764311 1 2355678888888877666 555678888888878888888888
Q ss_pred HHHHHhHhc
Q 047393 86 CLININSRC 94 (373)
Q Consensus 86 ~li~~~~~~ 94 (373)
.+|.+..+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888876654
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.45 E-value=30 Score=28.99 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH
Q 047393 214 LCPLIWRTLLLSSRVHGDMKLA 235 (373)
Q Consensus 214 p~~~~~~~li~~~~~~g~~~~A 235 (373)
+|+..+.+|...+.+.|+.+.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3445555555555555555444
No 326
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.35 E-value=27 Score=25.95 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=56.3
Q ss_pred CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 047393 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK 138 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 138 (373)
....++|..+.+.+...+- -...+--+-+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3457888888888877663 233333344556788899999966556666788888876653 5778888888888877
Q ss_pred HHcCCCCCHHHH
Q 047393 139 QWRYTSMNPTTF 150 (373)
Q Consensus 139 ~~~g~~p~~~t~ 150 (373)
..+| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 3444444
No 327
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.33 E-value=23 Score=26.41 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 140 (373)
-|..|+.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777665
No 328
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.26 E-value=39 Score=27.72 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=53.9
Q ss_pred HhcCCHHHHHHHHccCCCCChhHHHHHHH-----HHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHHccCCH
Q 047393 92 SRCGKIDDADLAFKSTPEKNSLSWTFIIS-----ARVNHGHPSEALDLFKDKQWRYTSMNPT-TFRSAL--KAYALMGLV 163 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~d~~~~~~li~-----~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll--~~~~~~g~~ 163 (373)
.+.++.++|+.-|..+.+.+.-.|-.|.. ...+.|+...|..-|++.-...-.|-.. -..-|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44455555555555555554444443322 2344555555666665554443333222 111111 123345555
Q ss_pred HHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 047393 164 GEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (373)
+......+.+... +-+.-...-.+|--+-.+.|++.+|.+.|...
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 5555555554221 22222333344555555566666666666553
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.03 E-value=16 Score=31.04 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHH-cCCCCCHhHHHHHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV-YHIEPSEEHYSIMVEA 192 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~g~~p~~~~~~~li~~ 192 (373)
|.+..++.+.+.+...+|+...++-.+.+ +.|..+-..++..+|-.|++++|..-++-.-+- -...+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44566788889999999999888877663 446667778899999999999998777765221 0123445677766653
No 330
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.00 E-value=78 Score=31.08 Aligned_cols=166 Identities=15% Similarity=0.107 Sum_probs=110.5
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 047393 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYT--SMNPTTFRSA 153 (373)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~l 153 (373)
++..+|+.-++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|..++..-.+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35678888888889999999999999988755 223444444444455888888877766655433 3333444443
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHH---HHHHhhCCCCCCHHHHHHHHHH----
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSE-EHYSIMVEALGRAGMFEEVL---EFIKGIVPGKLCPLIWRTLLLS---- 225 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~li~~---- 225 (373)
+. -..|+++.|..+++.+.++ + |+. ..-..=+....+.|..+.+. +++....+-.-+..+...+.--
T Consensus 375 f~--e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FE--ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HH--HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 33 3478999999999999765 3 543 33334456667888888888 6665533322233333333322
Q ss_pred -HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 226 -SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 226 -~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.-.++.+.|..++.++.+..|+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 334678999999999999988877
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.73 E-value=34 Score=30.23 Aligned_cols=84 Identities=11% Similarity=-0.096 Sum_probs=49.3
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC----CCChhHHHHHHHHHHh---
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP----EKNSLSWTFIISARVN--- 124 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~--- 124 (373)
=|.+++..+++.++....-+--+.--+.-..+....|-.|.|.++...+.++-..-. ..+...|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 456777777777776655443221111123444555666778877777766654332 2245557766665544
Q ss_pred --CCChHHHHHHH
Q 047393 125 --HGHPSEALDLF 135 (373)
Q Consensus 125 --~g~~~~A~~l~ 135 (373)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 58888887766
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.65 E-value=5.4 Score=20.89 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=8.1
Q ss_pred HHHHhHhcCCHHHHHHHH
Q 047393 87 LININSRCGKIDDADLAF 104 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~ 104 (373)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
No 333
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.49 E-value=6.9 Score=32.60 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 211 PGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 211 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
+..|++.+|..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467777777777777777777777777777666555
No 334
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.23 E-value=53 Score=30.30 Aligned_cols=200 Identities=11% Similarity=-0.042 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHH-HHHHhc-CCCCC---HHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCCCc---hh
Q 047393 12 IPWNLLLKACIKAKDYEMVHELL-ERIQLC-CGFID---SYSICDILNSCLNPILLNVGTQAQAYMTKR-GLISH---PA 82 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~-~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~---~~ 82 (373)
.+|-.+..+.+..|.+++++..- .+|.-. ...-. -..|..+.+++-+.-++.+++++-..-... |..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34555666677777777665531 112110 01111 123444444444444444444444332211 22221 12
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCC-------CC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCCHHH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTP-------EK--NSLSWTFIISARVNHGHPSEALDLFKDKQW----RYTSMNPTT 149 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t 149 (373)
..-++-.++.-.+.++.+++-|+... .+ ....|-.|-..|.+..+.++|.-...+..+ -++.--..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 33345566666777888888886543 12 345677888888888888888665555432 232222223
Q ss_pred HH-----HHHHHHHccCCHHHHHHHHHHhHHH---cCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 150 FR-----SALKAYALMGLVGEAYRLFLSMEEV---YHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 150 ~~-----~ll~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
|. .+.-++...|.+..|.+.-++..+- +|-.| -.....++.+.|...|+.+.|+.-|+.+|.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 32 2334567778888887777765332 23222 234445777888899999999998888765
No 335
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.63 E-value=14 Score=30.76 Aligned_cols=56 Identities=16% Similarity=-0.014 Sum_probs=29.5
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
...+.+......+...+.....|+..+|..++.++...|+.++|.++.+++...-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444443333333456666666666666666666666666666333444
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.25 E-value=11 Score=31.98 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=55.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC----CHHHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL----CPLIWRTLLL 224 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~ 224 (373)
|.+.-++.+.+.+.+++|+...++-.+.. +.|..+-..+++.||-.|++++|..-++-.-...| ...+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 44556777888899999999888776651 34667777899999999999999887776433444 4567777775
Q ss_pred H
Q 047393 225 S 225 (373)
Q Consensus 225 ~ 225 (373)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.69 E-value=86 Score=31.08 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=9.6
Q ss_pred HcCCHhHHHHHHHHHHh
Q 047393 23 KAKDYEMVHELLERIQL 39 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~ 39 (373)
...+.+.|+..|+.+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44556666666655544
No 338
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.97 E-value=27 Score=24.86 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHH
Q 047393 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 131 (373)
..|+.+.|.++++.++ +....|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455566666666665 5555666666666655554444
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.72 E-value=12 Score=25.99 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPSE-EHYSIMVEALGRAGMFEEVLE 204 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~ 204 (373)
..+.+.|...|....++..-+|+. .+...++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332111211 233444444444444444443
No 340
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.44 E-value=11 Score=20.66 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQL 39 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~ 39 (373)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567777788888888888888887765
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.14 E-value=40 Score=32.20 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=86.1
Q ss_pred HhCCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 047393 123 VNHGHPSEAL-DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201 (373)
Q Consensus 123 ~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 201 (373)
...|+...|- +++..+....-.|+.+...+.|. ...|+++.+.+.+....+ -+.....+-.+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456665554 45555555555677776666654 578999999999988743 345566778889999999999999
Q ss_pred HHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 202 VLEFIKGIVPGK-LCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 202 A~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
|+.+-+.|+.-+ -++.............|-++++...|+++..+.|..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 999988865511 233333333444456788999999999999877654
No 342
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.01 E-value=71 Score=27.84 Aligned_cols=192 Identities=12% Similarity=-0.029 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHhcCCCCCHH----HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047393 28 EMVHELLERIQLCCGFIDSY----SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 103 (373)
.++.+...+-... .+||-. .|.....+|....+++.|...+....+ +.+-|...|.+ ...++.|.-+
T Consensus 10 ~ea~e~~a~t~~~-wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamL 80 (308)
T KOG1585|consen 10 SEADEMTALTLTR-WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAML 80 (308)
T ss_pred HHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHH
Confidence 3444443332222 566643 466666778888899998887766543 22333333322 1234555555
Q ss_pred HccCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC--
Q 047393 104 FKSTPEKN--SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI-- 179 (373)
Q Consensus 104 ~~~m~~~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~-- 179 (373)
.++|.+-+ +..|+--...|..+|.++-|-.-+++.-+. ...-++++|.++|++.......
T Consensus 81 ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 81 AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccc
Confidence 55555432 334566778888999888877777665332 2344556666666654322110
Q ss_pred --CCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 180 --EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP------GKLCP-LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 180 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.--...+...-..+.+..++++|-..|.+-.. ..|+. ..|-..|-.+....++..|.+.++.--+
T Consensus 145 r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 145 RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 11223444555667777888887777765121 12332 3455556666667788888888877554
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.68 E-value=52 Score=26.16 Aligned_cols=64 Identities=6% Similarity=-0.086 Sum_probs=39.3
Q ss_pred CCCchHHHHHHHHHHHHcCCCCc---hhHHHHHHHHhHhcCCHHHHHHHHccCCCCC-hhHHHHHHHHHHhC
Q 047393 58 NPILLNVGTQAQAYMTKRGLISH---PAVGNCLININSRCGKIDDADLAFKSTPEKN-SLSWTFIISARVNH 125 (373)
Q Consensus 58 ~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d-~~~~~~li~~~~~~ 125 (373)
..++++++..+++.|.-. .|+ ..++-..+ +.+.|++++|..+|+++.+.. ...|..-+.++|-.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 367777777777777432 333 33443333 567788888888888887654 33555555555443
No 344
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=69.97 E-value=81 Score=30.97 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=70.7
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCC--CChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTPE--KNSL-SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
..|+.||.---+....+.+..+++.+.. |-.. -|.....-=.+.|..+.+.++|++-.+. ++.+...|...+.-++
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLK 124 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh
Confidence 3445555444444444555555655553 2222 2233333334566677777777766543 4455555555444333
Q ss_pred -ccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 159 -LMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 159 -~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
..|+.+...+.|+....-.|..- ....|...|.--..+++......++++.++
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 35666667777776655444332 445666666666667777777777777444
No 345
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=69.66 E-value=88 Score=28.41 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM---NPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
..+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555666666666666555555432111 122222223333445555556555555543
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.31 E-value=30 Score=25.44 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=27.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 121 ARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
++...|++++|..+.+.+ +.||...|.++... +.|..+.+..-+.+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 455666666666655544 36666666555443 556555555555555
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.73 E-value=13 Score=22.67 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=12.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 047393 118 IISARVNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~ 140 (373)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 348
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.52 E-value=24 Score=21.87 Aligned_cols=31 Identities=29% Similarity=0.215 Sum_probs=14.7
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 047393 23 KAKDYEMVHELLERIQLCCGFIDSYSICDIL 53 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll 53 (373)
+.|-..++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444445555555555555444444444433
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.43 E-value=17 Score=25.37 Aligned_cols=46 Identities=7% Similarity=-0.088 Sum_probs=36.1
Q ss_pred hcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 047393 195 RAGMFEEVLEFIKGIVPGKLCP----LIWRTLLLSSRVHGDMKLAKYALD 240 (373)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~ 240 (373)
...+.++|+..+.++++..+++ .++..|+.+++.-|+++++.++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999998877733333 688899999999999998887643
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.57 E-value=48 Score=25.54 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH
Q 047393 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190 (373)
Q Consensus 133 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 190 (373)
+-+..+..-.+.|+....-..+++|.+.+++..|.++|+-++.+ +.+....|-.++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 33444455567788888888888888888888888888877443 344444555544
No 351
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.44 E-value=45 Score=27.52 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHHHcCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSE------EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li 223 (373)
++-|..+|+.+.+....+-+. ..--..+-.|.+.|.+++|.+++++.+. .|+......-+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL 150 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKL 150 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHH
Confidence 455666666665543211000 1112334566777777777777777555 55544433333
No 352
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.93 E-value=58 Score=29.65 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=56.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCC-------CCChhHH--HHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTP-------EKNSLSW--TFIISARVNHGHPSEALDLFKDKQW-----RYTSMNPT 148 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ 148 (373)
....++...-+.++.++|.+.++++. +||.+.| +.+...+...|+..++.+++++..+ .|++|+..
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 33445566667778899998888775 4677666 4456677788999999999988877 68888654
Q ss_pred -HHHHHHHH-HHccCCHHH
Q 047393 149 -TFRSALKA-YALMGLVGE 165 (373)
Q Consensus 149 -t~~~ll~~-~~~~g~~~~ 165 (373)
.|..+-+- |-..|++..
T Consensus 157 ~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hhHHHHHHHHHHHHHhHHH
Confidence 34444333 444566544
No 353
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.73 E-value=56 Score=27.53 Aligned_cols=86 Identities=10% Similarity=-0.116 Sum_probs=45.4
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCc----hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHH---HHHHHhCCCh
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISH----PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI---ISARVNHGHP 128 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~l---i~~~~~~g~~ 128 (373)
+...|++++|.+-|...+..-.+.. ...|..-..++.+.+.++.|++--....+-++.--.+| ..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 3455666666666666655421111 12233333455666666666654444443333222222 2356666777
Q ss_pred HHHHHHHHHHHHc
Q 047393 129 SEALDLFKDKQWR 141 (373)
Q Consensus 129 ~~A~~l~~~m~~~ 141 (373)
++|++=|+++.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777765
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.99 E-value=19 Score=21.91 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=15.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhc
Q 047393 17 LLKACIKAKDYEMVHELLERIQLC 40 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~ 40 (373)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666776666666643
No 355
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=62.85 E-value=80 Score=25.45 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=9.1
Q ss_pred hHhcCCHHHHHHHHccCC
Q 047393 91 NSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~ 108 (373)
+.+.|++.+|..+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 344455555555555544
No 356
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=62.66 E-value=19 Score=30.62 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-cc
Q 047393 193 LGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-YV 251 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~-y~ 251 (373)
|-..|-.+-|.-=|...+.+.| -+..||-|.--+...|+++.|.+.|+...+++|.. |.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya 135 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 135 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH
No 357
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=61.87 E-value=18 Score=33.72 Aligned_cols=52 Identities=8% Similarity=-0.130 Sum_probs=35.7
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCC---CCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 047393 20 ACIKAKDYEMVHELLERIQLCCGF---IDSYSICDILNSCLNPILLNVGTQAQAY 71 (373)
Q Consensus 20 ~~~~~g~~~~A~~l~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 71 (373)
-+++.|+......+|+...+.|-. .=...|+.|-++|.-.+++++|.+++..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 367888888888888888876632 1123466666666667778888777654
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.69 E-value=47 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 66 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
.+-++......+.|++.+-.+-+.++.|.+++..|.++|+.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444455555666666666666666666666666665554
No 359
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=61.63 E-value=1.2e+02 Score=27.20 Aligned_cols=81 Identities=26% Similarity=0.077 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhHHHcCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHI---EPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 239 (373)
.+.|.+.|+.......- ..++.....++....+.|..+.-..+++. ....+++..-..++.+++-..+.+...+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~-~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWEL-YKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHH-HHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHH-HhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 34555566655432011 23444445555555566665544444444 333455666666666666666666666666
Q ss_pred HHHhc
Q 047393 240 DKLLE 244 (373)
Q Consensus 240 ~~m~~ 244 (373)
+.+..
T Consensus 225 ~~~l~ 229 (324)
T PF11838_consen 225 DLLLS 229 (324)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 66655
No 360
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.16 E-value=21 Score=31.81 Aligned_cols=44 Identities=9% Similarity=-0.051 Sum_probs=30.3
Q ss_pred CCCCHHH-HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHH
Q 047393 42 GFIDSYS-ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN 85 (373)
Q Consensus 42 ~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 85 (373)
+.||..+ |+..|....+.||+++|++++++..+.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4455554 6677777778888888888888887777655444443
No 361
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.08 E-value=1.6e+02 Score=28.90 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=16.8
Q ss_pred HHHHHhHhcCCHHHHHHHHccCC
Q 047393 86 CLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667777777777777777775
No 362
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.53 E-value=1.9e+02 Score=29.57 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCCCch---hHHHHHHHHhHhcCCHHHHHHHHccCCC-CC---h-------hHHHHHHHHHHhCCChHH
Q 047393 65 GTQAQAYMTKRGLISHP---AVGNCLININSRCGKIDDADLAFKSTPE-KN---S-------LSWTFIISARVNHGHPSE 130 (373)
Q Consensus 65 a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~-~d---~-------~~~~~li~~~~~~g~~~~ 130 (373)
-...+.+|.++--.|++ .+...++-.|....+++...++.+.++. || + ..|.--++---+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 34556666555334443 3445556667777778877777766653 22 1 123333343445577777
Q ss_pred HHHHHHHHHHc--CCCCCHHH-----HHHH--HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhH---HHHHHH-------
Q 047393 131 ALDLFKDKQWR--YTSMNPTT-----FRSA--LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH---YSIMVE------- 191 (373)
Q Consensus 131 A~~l~~~m~~~--g~~p~~~t-----~~~l--l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---~~~li~------- 191 (373)
|++..-.|.+. .+.||... |--+ -+.|...+..+.|.+.|++.- .+.|+... +..|+.
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 87776666543 35676543 3222 233556667778888887653 44665432 222222
Q ss_pred --------------HHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-cc
Q 047393 192 --------------ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM-YV 251 (373)
Q Consensus 192 --------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~-y~ 251 (373)
.+++.|.+++-.++++ +. ..+.+-.-.+++.+|.+.-+.|.++.|-. |.
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWd--------V~---~y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWD--------VA---TYFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHh--------HH---HhhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 2233333333332222 22 23455566789999999999999987766 54
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.18 E-value=1.8e+02 Score=28.35 Aligned_cols=164 Identities=12% Similarity=0.027 Sum_probs=111.0
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047393 78 ISHPAVGNCLININSRCGKIDDADLAFKSTPE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155 (373)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 155 (373)
+.|....-+++..++..-+..-.+.+-.+|.. .+...|..++..|..+ ..++-..+|+++.+.. -|.....--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 45556667788888887777777777777763 4677888999999988 5677788898887763 35555554444
Q ss_pred HHHccCCHHHHHHHHHHhHHHcCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHhhCC----CCCCHHHHHHHHHH
Q 047393 156 AYALMGLVGEAYRLFLSMEEVYHIEPS------EEHYSIMVEALGRAGMFEEVLEFIKGIVP----GKLCPLIWRTLLLS 225 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~~m~~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~li~~ 225 (373)
-+...++.+.+..+|..+..+ +-|. ...|.-++..- ..+.+..+.+..+ +. ...-.+.+.-+-.-
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~k-iqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKK-IQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHH-HHHhhccchHHHHHHHHHHH
Confidence 444558888888888887654 2331 13444444321 3455666666655 43 23345667777778
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 226 SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
|....++.+|.+++..+.+.+..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchh
Confidence 888999999999999888755433
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.56 E-value=63 Score=31.82 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPS--EEHYSIMVEALGRAGMFEEVLEFIKGIVP-GKLCPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~ 236 (373)
.|+...|...+.... ...|- .+....|...+.+.|...+|..++...+. ....+.++.++.+++.-..+++.|.
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 455555555554442 22331 12222334444455555555555554443 2223455555566666666666666
Q ss_pred HHHHHHhccCCCC
Q 047393 237 YALDKLLELDPGM 249 (373)
Q Consensus 237 ~~~~~m~~~~P~~ 249 (373)
+.|++...++|+.
T Consensus 697 ~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 697 EAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHhcCCCC
Confidence 6666666655555
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=58.04 E-value=40 Score=27.76 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcC----C-------HHHHHHHHHHHhccCCCC
Q 047393 199 FEEVLEFIKGIVPGKLCP-LIWRTLLLSSRVHG----D-------MKLAKYALDKLLELDPGM 249 (373)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~P~~ 249 (373)
+++|..-|++++.+.|+- .++..+..++...+ + +++|...|++....+|++
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334555555555577764 56666666665433 3 455555666666678876
No 366
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.55 E-value=95 Score=29.83 Aligned_cols=113 Identities=11% Similarity=-0.039 Sum_probs=62.3
Q ss_pred CCchHHH-HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHH
Q 047393 59 PILLNVG-TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDL 134 (373)
Q Consensus 59 ~~~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l 134 (373)
.|++..| .+++..+...--.|+.....+.| +...|+++.+...+..... ....+-.+++....+.|++++|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 3554444 34444444333344444333333 4556777777777655442 3556667777777777788888777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 135 FKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 135 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
-..|....+...++. ....-.--..|-++++...|+++.
T Consensus 380 a~~~l~~eie~~ei~-~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 380 AEMMLSNEIEDEEVL-TVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHhccccCChhhe-eeecccHHHHhHHHHHHHHHHHHh
Confidence 777766554432222 111112234566677777776653
No 367
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.54 E-value=43 Score=20.67 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=16.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 154 (373)
+.|-..++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3445555555555555555555555555444
No 368
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.75 E-value=1.3e+02 Score=26.05 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=11.6
Q ss_pred HHcCCHhHHHHHHHHHH
Q 047393 22 IKAKDYEMVHELLERIQ 38 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~ 38 (373)
.-.+.+++|.++|.+..
T Consensus 25 gg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAA 41 (288)
T ss_pred CCCcchHHHHHHHHHHH
Confidence 34457888888887653
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.30 E-value=71 Score=22.77 Aligned_cols=68 Identities=4% Similarity=-0.166 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 047393 29 MVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102 (373)
Q Consensus 29 ~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 102 (373)
.+.++++.+.+.|+ .+..-...+-.+-...|+.+.|.+++..+. +| ...|...+.++...|+-+-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhhc
Confidence 45677888888875 233334444443346788999999999987 54 4578889999999888776654
No 370
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.11 E-value=1.2e+02 Score=25.39 Aligned_cols=126 Identities=13% Similarity=0.025 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHH----
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR--SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS---- 187 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~---- 187 (373)
.|..++.+.. .+.+ +.....+.+...+-...-.++. .+...+...|++++|..-++..... +-| ..+.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~ 129 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAA 129 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHH
Confidence 4444555443 3333 4444455555542111122222 2345577788888888888766422 222 2222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 188 -IMVEALGRAGMFEEVLEFIKGIVPGKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 188 -~li~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
.|.......|..|+|+.+++. .. .+ .......-.+.+...|+-++|..-|+...+..+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t-~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDT-IK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhc-cc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 344566778999999999988 44 23 223334445678889999999999998887543
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.15 E-value=21 Score=23.52 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHh
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQL 39 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~ 39 (373)
-.+|.+|.+.|++++|.+..+++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4578899999999999998888765
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.93 E-value=15 Score=28.45 Aligned_cols=29 Identities=7% Similarity=-0.059 Sum_probs=16.3
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 047393 25 KDYEMVHELLERIQLCCGFIDSYSICDILNS 55 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~ 55 (373)
|.-..|-.+|.+|.+.|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3444566666666666666653 3444443
No 373
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.86 E-value=30 Score=35.61 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=60.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGD 231 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 231 (373)
++|..+.+.|-++-|+.+.+.=..++ .....+|+++.|++.-.+ +. +..+|..|.....+.|+
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akk-ld---d~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKK-LD---DKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHh-cC---cHHHHHHHHHHHHHhcc
Confidence 45666677888888877765543332 234568999999998887 44 78899999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 047393 232 MKLAKYALDKLLELD 246 (373)
Q Consensus 232 ~~~A~~~~~~m~~~~ 246 (373)
.+-|+..|++....+
T Consensus 688 ~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKNFE 702 (1202)
T ss_pred hHHHHHHHHHhhhhh
Confidence 999999999887754
No 374
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.38 E-value=2.4e+02 Score=28.33 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=95.4
Q ss_pred CCCChhHHHHHHHHHH-HcCCHhHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHcCCCchHHHHHHHHHHHHc----C
Q 047393 7 ISDVEIPWNLLLKACI-KAKDYEMVHELLERIQLCCGFIDSY-----SICDILNSCLNPILLNVGTQAQAYMTKR----G 76 (373)
Q Consensus 7 ~~p~~~~~n~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g 76 (373)
|+....++-.+...+. ...++++|...+.+.....-+++-. .-..++..+.+.+... |...++..++. +
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 3445566666677666 6678999999888765432222221 1223455566655544 88887776543 2
Q ss_pred CCCchhHHHHH-HHHhHhcCCHHHHHHHHccCCC-----CC--hhHHHHHHHHH--HhCCChHHHHHHHHHHHHcCC---
Q 047393 77 LISHPAVGNCL-ININSRCGKIDDADLAFKSTPE-----KN--SLSWTFIISAR--VNHGHPSEALDLFKDKQWRYT--- 143 (373)
Q Consensus 77 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~-----~d--~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~--- 143 (373)
..+-...|.-+ +..+...++...|.+.++.+.. .| +..+-.++.+. .+.+.++++.+.++++.....
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 22223344444 3333344788888888876642 23 33344444443 345667778888877743222
Q ss_pred ------CCCHHHHHHHHHHHH--ccCCHHHHHHHHHHh
Q 047393 144 ------SMNPTTFRSALKAYA--LMGLVGEAYRLFLSM 173 (373)
Q Consensus 144 ------~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~m 173 (373)
.|-..+|..+++.++ ..|+++.+...++++
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667777766554 567777776665555
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.30 E-value=36 Score=22.36 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=13.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhH
Q 047393 151 RSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
-.+|.++...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345556666666666666655553
No 376
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.76 E-value=1.4e+02 Score=25.54 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHHHHHHH--hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 114 SWTFIISARV--NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 114 ~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
.|..++.+|. .++++++|.+.+-+ -.+.|+-. .-++.++...|+.+.|..+++.+. ....+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 3555666654 45667777776622 11222221 146677777888888888888762 11122333333444
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g 230 (373)
. ..++.+.+|..+-+. ....-....+..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~-~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRS-YPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHh
Confidence 4 667888889888887 331112347777777776544
No 377
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.55 E-value=1.3e+02 Score=25.14 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=45.4
Q ss_pred HHhHhcCCHHHHHHHHccCC-CCChhHHHH-----HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 89 NINSRCGKIDDADLAFKSTP-EKNSLSWTF-----IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~-~~d~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
..+..+|++++|+..++... .+.-..+.. |.......|.+++|+.+++.....+.. ......--+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 44566677777776666443 332223333 233455667777777766655433211 1111222345666677
Q ss_pred HHHHHHHHHHhHHH
Q 047393 163 VGEAYRLFLSMEEV 176 (373)
Q Consensus 163 ~~~a~~~~~~m~~~ 176 (373)
-++|..-|+.....
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 77777777766544
No 378
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=53.47 E-value=2.4e+02 Score=28.02 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=107.1
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
.+....|+.|+..+. .=+.+.-.++++++.. .+ ...+..++++....|......-+.+.+....+ ++...-..+
T Consensus 307 ~~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~-~~~ea~~~~ 380 (574)
T smart00638 307 EPAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI-TPLEAAQLL 380 (574)
T ss_pred cchHHHHHHHHHHHH-hCCHHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 455667888888655 4456778888888764 12 56788899999999987766666666655554 333333333
Q ss_pred HHHhH--hcCCHHHHHHHHccCCC----CC-------hhHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCC-CCCH
Q 047393 88 ININS--RCGKIDDADLAFKSTPE----KN-------SLSWTFIISARVNHGHP------SEALDLFKDKQWRYT-SMNP 147 (373)
Q Consensus 88 i~~~~--~~g~~~~A~~~~~~m~~----~d-------~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~-~p~~ 147 (373)
..+.. +.-..+-...+|+-+.. +. ..+|.+++..+|..... ++....+.+..+... .-|.
T Consensus 381 ~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 381 AVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc
Confidence 33222 22233333333332221 12 45677778766665542 344444443332211 2244
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHh
Q 047393 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA--GMFEEVLEFIKG 208 (373)
Q Consensus 148 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~ 208 (373)
.--...|.+.+..|.......+-..+ .. ....+...-...+.++.+. ...+++..++-.
T Consensus 461 ~~~~~~LkaLGN~g~~~~i~~l~~~l-~~-~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~ 521 (574)
T smart00638 461 EEIQLYLKALGNAGHPSSIKVLEPYL-EG-AEPLSTFIRLAAILALRNLAKRDPRKVQEVLLP 521 (574)
T ss_pred hheeeHHHhhhccCChhHHHHHHHhc-CC-CCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 44566788888888876655444444 31 2234555556666666643 345555554433
No 379
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.30 E-value=2.5e+02 Score=28.26 Aligned_cols=218 Identities=14% Similarity=-0.006 Sum_probs=98.2
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHhHhc---
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG-LISHPAVGNCLININSRC--- 94 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~--- 94 (373)
..+.-.|+++.|.+.+-+ ..+...|.+.+...+.-+.-.+-..... ..+.... -.|....+..||..|++.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445668999999998766 2334567777777776654332222211 2222111 012225677888888764
Q ss_pred CCHHHHHHHHccCCC---CC-hhH-HHHHHHHHHhCCChHHHHHHHHHHHHcC---------------CC-CCHHHHH--
Q 047393 95 GKIDDADLAFKSTPE---KN-SLS-WTFIISARVNHGHPSEALDLFKDKQWRY---------------TS-MNPTTFR-- 151 (373)
Q Consensus 95 g~~~~A~~~~~~m~~---~d-~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------~~-p~~~t~~-- 151 (373)
.+..+|.+.|--+.. ++ ... +.++-......++++ .++..+...| +. ++.....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~ 417 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREII 417 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeeccccccCCCCcHHHHHHHH
Confidence 678888887765542 21 111 222222222222221 1221111111 22 2222222
Q ss_pred -HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH-HHHhcCC-----------HHHHHHHHHhhCCCCC----
Q 047393 152 -SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE-ALGRAGM-----------FEEVLEFIKGIVPGKL---- 214 (373)
Q Consensus 152 -~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~-~~~~~g~-----------~~~A~~~~~~~~~~~p---- 214 (373)
.+..-+...|++++|..+|.-. +++ ..-....|.++. +...... ...|.++.+. ....+
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La-~~~--d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~-y~~~~~~~~ 493 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLA-EEY--DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER-YKSNPHISS 493 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHT-T-H--HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH-HTTSHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-hhH--HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH-HHhCcchHh
Confidence 2334466789999999999877 322 111233333332 2222222 3456666555 32111
Q ss_pred -----CHHHHHHHHHH-----HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 215 -----CPLIWRTLLLS-----SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 215 -----~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+..|+..|++. +...|+++.|.+.++++. +-|.+
T Consensus 494 ~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~-liP~~ 537 (613)
T PF04097_consen 494 KVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD-LIPLD 537 (613)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT--S-S-
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCC
Confidence 23566666654 367899999998888775 44543
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.91 E-value=1.7e+02 Score=26.18 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=108.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHcCCCchHHHHHHHHH----HHHcCCCCchhHHH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSY-------SICDILNSCLNPILLNVGTQAQAY----MTKRGLISHPAVGN 85 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~----m~~~g~~~~~~~~~ 85 (373)
+.+..++.+++++|...+.+....|+..|.. +...+...|.+.|+...-.+.... |..-.-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4566788999999999999999999877654 444567778877776544433332 22222223344566
Q ss_pred HHHHHhHhc-CCHHHHHHHHccCCC---C------ChhHHHHHHHHHHhCCChHHHHHHHHHH----HHcCCCCCHHHHH
Q 047393 86 CLININSRC-GKIDDADLAFKSTPE---K------NSLSWTFIISARVNHGHPSEALDLFKDK----QWRYTSMNPTTFR 151 (373)
Q Consensus 86 ~li~~~~~~-g~~~~A~~~~~~m~~---~------d~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~ 151 (373)
+|+..+-.. ..++.-.++.....+ + ....=.-+|..+.+.|.+.+|+.+...+ ++-.-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 667666433 345555555544332 1 1122245788899999999998876554 4444466655443
Q ss_pred HHH-HHHHccCCHHHHHHHHHHhHH---HcCCCCCHhHHHHHHHHH--HhcCCHHHHHHHHHhhCC
Q 047393 152 SAL-KAYALMGLVGEAYRLFLSMEE---VYHIEPSEEHYSIMVEAL--GRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 152 ~ll-~~~~~~g~~~~a~~~~~~m~~---~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~ 211 (373)
.+= .+|-...++.++..-+...+. .-=++|-...---|+.+- |...++..|..+|-++.+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 331 233344444444433333321 112455444433444433 233455566666655444
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.65 E-value=72 Score=26.28 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=33.3
Q ss_pred CCCCH-hHHHHHHHHHHhcC----C-------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 179 IEPSE-EHYSIMVEALGRAG----M-------FEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 179 ~~p~~-~~~~~li~~~~~~g----~-------~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+.|+. .++.++-.+|...+ + +++|.+.|+++...+|+..+|+.-+.... +|-++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 46654 55555555555432 2 44555566654557899999998887763 35556666554
No 382
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.31 E-value=2.6e+02 Score=27.76 Aligned_cols=145 Identities=7% Similarity=-0.063 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHHhcCCCCCHHHHHHHH--HH-HcCCCchHHHHHHHHHHHH-------cCCCCchhHHHHHHHHhHhcC-
Q 047393 27 YEMVHELLERIQLCCGFIDSYSICDIL--NS-CLNPILLNVGTQAQAYMTK-------RGLISHPAVGNCLININSRCG- 95 (373)
Q Consensus 27 ~~~A~~l~~~m~~~g~~p~~~~~~~ll--~~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 95 (373)
...|.+.++...+.|.. .......++ .+ .+...+++.|..+++.+.+ .| +....+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45677777777766532 111111222 22 4566788999999988866 45 3335555666666543
Q ss_pred ----CHHHHHHHHccCCC---CChhHHHHHHHHHHh-CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--ccCCHHH
Q 047393 96 ----KIDDADLAFKSTPE---KNSLSWTFIISARVN-HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA--LMGLVGE 165 (373)
Q Consensus 96 ----~~~~A~~~~~~m~~---~d~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~ 165 (373)
+.+.|..++....+ |+....-..+.-... ..+...|.++|...-+.|.. +..-+..++.... -..+...
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 55667777765432 333222222211111 23567888888888777732 2222222222222 2346777
Q ss_pred HHHHHHHhHHH
Q 047393 166 AYRLFLSMEEV 176 (373)
Q Consensus 166 a~~~~~~m~~~ 176 (373)
|..++.+..+.
T Consensus 383 A~~~~k~aA~~ 393 (552)
T KOG1550|consen 383 AFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHc
Confidence 77777777554
No 383
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.69 E-value=1.1e+02 Score=23.40 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHcc
Q 047393 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKS 106 (373)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 106 (373)
|..+--.|++.-+ .+.++|..|...|+-.. ...|..-...+.+.|++++|.++|+.
T Consensus 68 ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 68 YLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3334334444333 77788888877776554 44566677777777888888877753
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.08 E-value=79 Score=24.96 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047393 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG 95 (373)
Q Consensus 32 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 95 (373)
++.+.+.+.|++++.. -..++..+.+.++.-.|.++|+++.+.+...+..|--.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455667788877654 34466667777777889999999988876665554434455555555
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.99 E-value=35 Score=30.51 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 153 (373)
|+.-|..-.+.|+.++|+.++++.++.|+.--..||...
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 456677777777777777777777777665444454433
No 386
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.91 E-value=69 Score=22.64 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHH
Q 047393 94 CGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 94 ~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 131 (373)
..+.+.|.++++.++.++..+|.++.+++...|...-|
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34456666666666666666666666666665554433
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=1.9e+02 Score=25.88 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=66.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHccCCHHHHHHHHHHhH---HHcCCCCCHhHHHH
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPT-------TFRSALKAYALMGLVGEAYRLFLSME---EVYHIEPSEEHYSI 188 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~m~---~~~g~~p~~~~~~~ 188 (373)
.+-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+...... ..+.-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344556677777777777777777766544 44455666666666554443333221 22111223344445
Q ss_pred HHHHHHh-cCCHHHHHHHHHhhCCC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 189 MVEALGR-AGMFEEVLEFIKGIVPG--KL-----CPLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 189 li~~~~~-~g~~~~A~~~~~~~~~~--~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
||+.+-. ...++...++....+++ +- -...=..++..+.+.|.+.+|..+...+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5555443 23444444444443220 00 11223456777788888888877655544
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.51 E-value=3.3e+02 Score=28.46 Aligned_cols=224 Identities=15% Similarity=0.056 Sum_probs=120.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhc----C----------CCCCHHHHH----HHHHHH--cCCCchHHHHHHHHHHHHcCC
Q 047393 18 LKACIKAKDYEMVHELLERIQLC----C----------GFIDSYSIC----DILNSC--LNPILLNVGTQAQAYMTKRGL 77 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~~~~~----~ll~~~--~~~~~~~~a~~~~~~m~~~g~ 77 (373)
|.--..+|+++.|..++++.-.+ + --|+....+ .++.+. ....++.+|..+..++...--
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~ 446 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK 446 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence 33345678888887777765111 0 113222111 223332 345778888888888754422
Q ss_pred CCch-------hHHHHHHHH-hHhcCCHHHHHHHHccCC--------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 047393 78 ISHP-------AVGNCLINI-NSRCGKIDDADLAFKSTP--------EKNSLSWTFIISARVNHGHPSEALDLFKDKQWR 141 (373)
Q Consensus 78 ~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~--------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 141 (373)
.|+. ..+++|-.. ....|++++|.++-+... ...++.+.++..+..-.|++++|..+.++..+.
T Consensus 447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 2221 244444322 234578888887765433 236778888888888899999998888776654
Q ss_pred CCCCCHHHH---HHHH--HHHHccCCH--HHHHHHHHHhHHHcCC-C----CCHhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 047393 142 YTSMNPTTF---RSAL--KAYALMGLV--GEAYRLFLSMEEVYHI-E----PSEEHYSIMVEALGRAGMFEEVLEFIKGI 209 (373)
Q Consensus 142 g~~p~~~t~---~~ll--~~~~~~g~~--~~a~~~~~~m~~~~g~-~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (373)
.-.-+...+ ..+. ..+-..|.. .+....+......+.. . +-..++..+..++.+ ++.+..-....
T Consensus 527 a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~ 603 (894)
T COG2909 527 ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLG 603 (894)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhc
Confidence 222233322 2222 224455632 2333333333222111 1 123444555555555 33333322221
Q ss_pred CC----CCCCH--HH--HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 210 VP----GKLCP--LI--WRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 210 ~~----~~p~~--~~--~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
++ ..|.+ .. +..|.......|+.++|...++++..
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 21 23332 22 23677888899999999999998876
No 389
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.73 E-value=1.8e+02 Score=26.38 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh----------cCCHHH
Q 047393 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR----------AGMFEE 201 (373)
Q Consensus 132 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----------~g~~~~ 201 (373)
.++++.|.+.++.|.-.+|.-+.-.+++.=.+.....+|+.+..+ ..-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777888888888888877777777777788888888877532 2224445544443 377777
Q ss_pred HHHHHHh
Q 047393 202 VLEFIKG 208 (373)
Q Consensus 202 A~~~~~~ 208 (373)
..++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 7777776
No 390
>PRK10941 hypothetical protein; Provisional
Probab=48.69 E-value=97 Score=27.44 Aligned_cols=64 Identities=17% Similarity=0.016 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+.+-.+|.+.++++.|+.+.+.++...| ++.-+.--.-.|.+.|.+..|..=++.-++..|+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 34556677788888888888888766666 34555555556778888888888777777765543
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.64 E-value=3.2e+02 Score=28.10 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=36.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047393 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDM 232 (373)
Q Consensus 153 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 232 (373)
.+..|.+.|-+++-.-++..| | .++.+|.-.--+.+++++|.++..+ .-|...|..||.-+...-.+
T Consensus 640 A~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKe----q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 640 ALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKE----QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHh----cCCHHHHHHHHHHhhcCcHH
Confidence 344444444444444444444 2 1233333333344556666666655 56889999999877654433
No 392
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.53 E-value=54 Score=24.28 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCCC
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI--LLNVGTQAQAYMTKRGLIS 79 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~ 79 (373)
..+|..|...|+.++|.+-+.++... .--......++..+...+ .-+.+..++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 45677888889999999988876432 111223344444444432 2344556666666665443
No 393
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.63 E-value=3e+02 Score=27.49 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=83.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
..-+.+.+.+.+.|-.++|+++- +|..-- .....+.|+++.|.++..+. -+..-|..|-++....|
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s-----~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS-----TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC-----CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcc
Confidence 35667777788888888877642 221111 12234678888887776553 36778888888888888
Q ss_pred CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047393 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 162 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (373)
++..|.+.|... +. |..|+-.+...|+-+....+-...-+... .|...-+|...|+++++.+++..
T Consensus 681 ~l~lA~EC~~~a-~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 681 ELPLASECFLRA-RD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cchhHHHHHHhh-cc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc----cchHHHHHHHcCCHHHHHHHHHh
Confidence 888888888766 22 45566666666765533333332111122 23444566678888888877765
Q ss_pred Hhc
Q 047393 242 LLE 244 (373)
Q Consensus 242 m~~ 244 (373)
-.+
T Consensus 747 t~r 749 (794)
T KOG0276|consen 747 TQR 749 (794)
T ss_pred cCc
Confidence 433
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.40 E-value=13 Score=28.89 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047393 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156 (373)
Q Consensus 122 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 156 (373)
....|.-.+|..+|++|+++|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 44556677899999999999999874 5566554
No 395
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.59 E-value=47 Score=28.56 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 193 LGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..+.|+.+.|.+++.+++...| ....|-.+-..--+.|+.+.|.+.|++..+++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456667777777777666555 45677777777777777777777777777777766
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.18 E-value=69 Score=31.56 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=85.0
Q ss_pred HHHHHHccCCCCChhHHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 99 DADLAFKSTPEKNSLSWTFI---ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 99 ~A~~~~~~m~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
-|-.+|..|..|+.-.|-+| .-.....|+...|...+.........-..+....+.+...+.|..-.|..++.+...
T Consensus 591 ~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 591 IGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 34455555655554444322 111234678888888777665543222344556667777788888888888877654
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 047393 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSR 227 (373)
Q Consensus 176 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 227 (373)
-. ...+.++-++..+|.-..+++.|++-|+.+|+..| ++..-+.|...-|
T Consensus 671 ~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 671 IN--SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 32 45566777888999999999999999999898666 5677777766544
No 397
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.85 E-value=1.9e+02 Score=25.94 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=50.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcC
Q 047393 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAG 197 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 197 (373)
++..+.+.++..+..+.+..+. ....-...+......|++..|.+++.+..+.. . +..-|+++=+.- .
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL--E-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--H-hcccchHHHHHh---H
Confidence 3444444455544444444443 12223344555556677777777776664321 0 111111111111 1
Q ss_pred CHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047393 198 MFEEVLEFIKGIV-------PGKLCPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 198 ~~~~A~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~ 236 (373)
++.+-....++++ ...-|+..|..++.||.-.|+...+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 1222222222211 12457788888888888888765544
No 398
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=45.65 E-value=1.4e+02 Score=23.01 Aligned_cols=58 Identities=14% Similarity=-0.038 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR-TLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~ 241 (373)
..+..++..++.-.|..++|.++++. .+..++-...| -++..|.+..+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~-FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSK-FKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44556777777778888888888888 77655554443 567788887777766665544
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.29 E-value=2.6e+02 Score=26.14 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=41.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHhHHH
Q 047393 120 SARVNHGHPSEALDLFKDKQWRYTSMNPT--TFRSALKAYA--LMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 120 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 176 (373)
..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 666554 4455555554 366788999999887543
No 400
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.86 E-value=2.4e+02 Score=27.68 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLC 40 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~ 40 (373)
..-++.-|.+.+++++|..++..|.-.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~ 437 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWN 437 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcc
Confidence 445777899999999999988888643
No 401
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=44.73 E-value=21 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=17.9
Q ss_pred CCHhHHHHHHHHHHhcC-CCCCHH
Q 047393 25 KDYEMVHELLERIQLCC-GFIDSY 47 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~g-~~p~~~ 47 (373)
-+++.|+..|.++...| ++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 47899999999999866 555544
No 402
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=44.69 E-value=35 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHCCCccCCchhhhH
Q 047393 274 VSDKLAEIEENMKELGFVLNRSLYQTK 300 (373)
Q Consensus 274 ~~~~~~~l~~~m~~~g~~p~~~~~~~~ 300 (373)
..+.+++..++++..|+.||......+
T Consensus 10 il~~ie~~inELk~dG~ePDivL~G~e 36 (85)
T PF08967_consen 10 ILELIEEKINELKEDGFEPDIVLVGPE 36 (85)
T ss_dssp HHHHHHHHHHHHHHTT----EEEE-HH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcHH
Confidence 456677888899999999999875443
No 403
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.43 E-value=2.1e+02 Score=25.66 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=55.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC--ChhHHHHHHHHHHhCCChH
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEK--NSLSWTFIISARVNHGHPS 129 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--d~~~~~~li~~~~~~g~~~ 129 (373)
++....+..++....+.+..+. ....-...+..+...|++..|+++..+..+- ...-|+++=. -..+++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~---L~~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRH---LSSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHH---HhHHHH
Confidence 4444444455555555555543 2333445566667788888888877655421 1011111100 011223
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCCHHHHHH
Q 047393 130 EALDLFKDKQWRY-----TSMNPTTFRSALKAYALMGLVGEAYR 168 (373)
Q Consensus 130 ~A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~ 168 (373)
+-....+++.+.. ...|+..|..++.||.-.|+...+.+
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 3333333332211 14688888888888888887766553
No 404
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=44.35 E-value=2.6e+02 Score=25.73 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=55.3
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047393 85 NCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA-LDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 163 (373)
..+.+.++|.++.+.+..+-+.+..--.....+|..++-...-.+.. ..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 34667788888777776666666654444455555555444433333 3344444433 8888888999988887776
Q ss_pred HHHHHHHHHhHHH
Q 047393 164 GEAYRLFLSMEEV 176 (373)
Q Consensus 164 ~~a~~~~~~m~~~ 176 (373)
......+..+...
T Consensus 247 ~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 247 DLVAILIDALLQS 259 (340)
T ss_pred hHHHHHHHHHhcC
Confidence 6666656555443
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.33 E-value=2.2e+02 Score=24.99 Aligned_cols=155 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCCchhHHHHHHHHhHhcCCH
Q 047393 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR----GLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~ 97 (373)
++++++++|++++..-... +.+.++...|-++-..+++. +.++|...-..++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHccCC---------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047393 98 D-DADLAFKSTP---------EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 98 ~-~A~~~~~~m~---------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 167 (373)
+ +-.++.+++. ..|+.....+...|.+.|++.+|..-| -.|-.|+...+..++......|...++-
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf----l~~~~~~~~~~~~ll~~~~~~~~~~e~d 141 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF----LLGTDPSAFAYVMLLEEWSTKGYPSEAD 141 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH----HTS-HHHHHHHHHHHHHHHHHTSS--HH
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH----HhcCChhHHHHHHHHHHHHHhcCCcchh
Q ss_pred HHHHHhHHHcCCCCCHhHHHHHHHHHHh
Q 047393 168 RLFLSMEEVYHIEPSEEHYSIMVEALGR 195 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~~~~~~li~~~~~ 195 (373)
-+..+..-.+=.--+...-+.++..|.+
T Consensus 142 lfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 142 LFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.93 E-value=1.1e+02 Score=26.49 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVP-------GKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
--+..-|.+.|++++|.++|+.+.. ..+...+...+..++.+.|+.+....+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677778888888888877432 1123456667777778888888777665444
No 407
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.68 E-value=42 Score=22.39 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=33.1
Q ss_pred CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC
Q 047393 6 LISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN 58 (373)
Q Consensus 6 m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 58 (373)
+-.|+...++.++..++...-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 3 ~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 3 IVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp TEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3346666777777777777777777777777777664 355555555555544
No 408
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=43.63 E-value=64 Score=18.55 Aligned_cols=29 Identities=21% Similarity=0.025 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHhccCC
Q 047393 219 WRTLLLSSRVHGDMKLAKYA--LDKLLELDP 247 (373)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~--~~~m~~~~P 247 (373)
|-.+...+-..|+.++|.++ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 44555666778888888888 446655554
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.62 E-value=2.8e+02 Score=25.97 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=37.0
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHc--CCCchHHHHHHHHHHHHc
Q 047393 20 ACIKAKDYEMVHELLERIQLCCGFIDSY--SICDILNSCL--NPILLNVGTQAQAYMTKR 75 (373)
Q Consensus 20 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~m~~~ 75 (373)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345788899999999998876 555554 3444444443 345677888888876554
No 410
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.61 E-value=4.3e+02 Score=28.11 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHcCCCc
Q 047393 44 IDSYSICDILNSCLNPIL 61 (373)
Q Consensus 44 p~~~~~~~ll~~~~~~~~ 61 (373)
+|..+-...+..+.+.+.
T Consensus 633 ~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP 650 (897)
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 555555555555555554
No 411
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.47 E-value=2.2e+02 Score=26.17 Aligned_cols=82 Identities=17% Similarity=0.014 Sum_probs=46.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhc---CCCCCHHHHHH--HHHHHcCCCchHHHHHHHHHHHH-----cCCCCchh-HHHH
Q 047393 18 LKACIKAKDYEMVHELLERIQLC---CGFIDSYSICD--ILNSCLNPILLNVGTQAQAYMTK-----RGLISHPA-VGNC 86 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~-~~~~ 86 (373)
+...-+.++.++|++.++++.+. --.||.+.|.. ...++...|++.++++++.+..+ .|++|++. .|..
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 34444556777777777777653 12355555443 33444566777777777777766 56666544 3444
Q ss_pred HHHHhHh-cCCHHH
Q 047393 87 LININSR-CGKIDD 99 (373)
Q Consensus 87 li~~~~~-~g~~~~ 99 (373)
+-.-|.| .|++..
T Consensus 162 lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 162 LSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHhHHH
Confidence 4443433 344443
No 412
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.39 E-value=1.8e+02 Score=24.50 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH-hHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE-EHYSIMV 190 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li 190 (373)
...-+.++..+...|+++.|.+.|.-+.... ..|..+ .+.-+.+++.+- +-.+.. .-++.|+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~------------~W~iG~eIL~~~----~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS------------LWGIGAEILMRR----GEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh------------cchHHHHHHHcC----CCcchHHHHHHHHH
Confidence 3456778888899999999999998887653 333321 233344444332 112222 4445555
Q ss_pred HHHHhcCCHHHHHH------HHHhhCC-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 191 EALGRAGMFEEVLE------FIKGIVP-GKLC---PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 191 ~~~~~~g~~~~A~~------~~~~~~~-~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
..|.......+... +|+.--+ ..|. ...|..++..-.+....+++.++.++|-+
T Consensus 104 ~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~E 167 (199)
T PF04090_consen 104 SFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDE 167 (199)
T ss_pred HHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 55554333332222 1211000 1221 13455666555455566677788877777
No 413
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.99 E-value=1.1e+02 Score=24.08 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 180 EPSEEHYSIMVEALGRAGM---FEEVLEFIKGIVP-GKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 180 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.++..+--.+.-++.+..+ ..+...++++..+ ..| ......-|.-++.+.|+++++.+..+.+++.+|++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3444444444445555433 3345556666443 223 22344445567788888888888888888887755
No 414
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.80 E-value=1.3e+02 Score=28.39 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=45.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCC-----------CChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPE-----------KNSLSWTFIISARVNHGHPSEALDLFKDKQ 139 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 139 (373)
+.-.|+..++-.|++..|+++++.+.- -.+.+|.-+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999887651 145677778888899999999999998764
No 415
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.63 E-value=2.6e+02 Score=25.23 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
+++.+.++|..+|.+.+|.++.+....-. +.+...+-.++..+...|+--.|.+-+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 33444556666777777777776664321 33556666667777776664444443333
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.53 E-value=59 Score=24.23 Aligned_cols=26 Identities=4% Similarity=-0.027 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHH
Q 047393 49 ICDILNSCLNPILLNVGTQAQAYMTK 74 (373)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 74 (373)
|..|+..|...|..++|.+++.....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777755
No 417
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.07 E-value=1.3e+02 Score=21.49 Aligned_cols=41 Identities=24% Similarity=0.022 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 047393 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYM 72 (373)
Q Consensus 32 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 72 (373)
++|+-....|+..|...|..++..+.-.-.++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444455445554444444443333334444444443
No 418
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.02 E-value=90 Score=19.81 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=23.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDI 52 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 52 (373)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 45567888999999998888887 46765544433
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.91 E-value=47 Score=29.86 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=8.4
Q ss_pred ccCCHHHHHHHHHHh
Q 047393 159 LMGLVGEAYRLFLSM 173 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m 173 (373)
+.|+.++|..+|+..
T Consensus 128 ~~Gk~ekA~~lfeHA 142 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHA 142 (472)
T ss_pred hccchHHHHHHHHHH
Confidence 455555555555554
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=41.50 E-value=3e+02 Score=25.62 Aligned_cols=64 Identities=16% Similarity=-0.065 Sum_probs=44.6
Q ss_pred ChhHHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHhH
Q 047393 111 NSLSWTFI---ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA-LMGLVGEAYRLFLSME 174 (373)
Q Consensus 111 d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~m~ 174 (373)
|...|-++ |..+.+.|.+.-|+++-+-+......-|.......|+.|+ ++++++--.++.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 44555554 5567888999999998888887754446666667777765 5677776777777653
No 421
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.49 E-value=40 Score=23.52 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=11.7
Q ss_pred HcCCCchHHHHHHHHHHHHcC
Q 047393 56 CLNPILLNVGTQAQAYMTKRG 76 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g 76 (373)
+.+..-.++|+++++.|.++|
T Consensus 41 L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 41 LRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 344445556666666665555
No 422
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.48 E-value=19 Score=20.21 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHH
Q 047393 199 FEEVLEFIKGIVPGKLCPLIWR 220 (373)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~ 220 (373)
++.|..+|++.+...|++.+|-
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHH
Confidence 4455555555444455555554
No 423
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.37 E-value=2.7e+02 Score=24.78 Aligned_cols=198 Identities=10% Similarity=0.031 Sum_probs=115.3
Q ss_pred CCCChhHHHHHHHHH-HHcCCHhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHcCCCchHHHHHHHHHHHH---cCCCC
Q 047393 7 ISDVEIPWNLLLKAC-IKAKDYEMVHELLERIQLCCGFIDSY---SICDILNSCLNPILLNVGTQAQAYMTK---RGLIS 79 (373)
Q Consensus 7 ~~p~~~~~n~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~ 79 (373)
.+||+-.=|..-.+- .+...+++|+.-|++..+....-... ..-.++....+.+++++....|.+|+. +.+..
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 467776655433322 23457899999999988743222222 345678888999999999988888743 33333
Q ss_pred c--hhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CChh----HHHHHHHHHHhCCChHHHHHHHHHHHHc-----CC
Q 047393 80 H--PAVGNCLININSRCGKIDDADLAFKSTPE-----KNSL----SWTFIISARVNHGHPSEALDLFKDKQWR-----YT 143 (373)
Q Consensus 80 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~ 143 (373)
| ....|++++.-+-+.+.+--.++++.-.+ .+.. |-+-|...|...|.+.+...+++++.+. |-
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 2 44677888877777776666555543221 1221 2234556666666677777777776543 10
Q ss_pred ------CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH----HHHHhcCCHHHHHH
Q 047393 144 ------SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV----EALGRAGMFEEVLE 204 (373)
Q Consensus 144 ------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~ 204 (373)
..-...|..=|..|....+-..-..+|++......--|.+.....+= .+..+.|++++|..
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 01123566667777777776666777776543323345544433322 22334567766554
No 424
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.28 E-value=4.5e+02 Score=27.40 Aligned_cols=171 Identities=16% Similarity=0.104 Sum_probs=90.2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH----HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNS----CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININS 92 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 92 (373)
-|..+.+...+.-|+.+ .+..+. |..+...++.. +.+.|++++|...|-+-+.. ++|. .+|.-|.
T Consensus 340 kL~iL~kK~ly~~Ai~L---Ak~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINL---AKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred HHHHHHHhhhHHHHHHH---HHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 34555555566666554 233333 33333334333 34667888887777654422 1222 1222233
Q ss_pred hcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047393 93 RCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 169 (373)
...++.+--..++.+.+. +...-+.|+.+|.+.++.++-.+..+... .|.. ..-.-..+..|.+.+-.++|..+
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 333333333333333321 33444678888888888887766655443 2211 11234456666667777777665
Q ss_pred HHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 170 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
=... +. +...... .+-..|++++|++++.. ++
T Consensus 486 A~k~----~~--he~vl~i---lle~~~ny~eAl~yi~s-lp 517 (933)
T KOG2114|consen 486 ATKF----KK--HEWVLDI---LLEDLHNYEEALRYISS-LP 517 (933)
T ss_pred HHHh----cc--CHHHHHH---HHHHhcCHHHHHHHHhc-CC
Confidence 5433 21 2333333 34457889999999999 76
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.60 E-value=77 Score=28.86 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=23.2
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (373)
+.|+..+|.+.++.+.++..+..-...-..||+++....-+.+...++.
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666654442211111223345555555554444444443
No 426
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.39 E-value=3.6e+02 Score=27.68 Aligned_cols=125 Identities=17% Similarity=0.027 Sum_probs=79.2
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047393 121 ARVNHGHPSEALDLFKDKQWRYTSMNP--TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM 198 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 198 (373)
++..-|+-++|..+.++|.... .|-. .-.-++.-+|+..|+-....+++.-... ....|+.-+..+.-++.-..+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC
Confidence 3455677778888888887654 2221 1223455678888888877777776544 234466666666667777788
Q ss_pred HHHHHHHHHhhCC--CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 047393 199 FEEVLEFIKGIVP--GKLCPL--IWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYV 251 (373)
Q Consensus 199 ~~~A~~~~~~~~~--~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~y~ 251 (373)
.+....+.+- +. ..|.+. +--+|--+|+..|+ .+|..+++.|.+ +|.+|+
T Consensus 587 p~~~~s~V~l-Lses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fV 640 (929)
T KOG2062|consen 587 PEQLPSTVSL-LSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFV 640 (929)
T ss_pred hhhchHHHHH-HhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHH
Confidence 8877777766 33 334443 22333345555665 578999999988 777766
No 427
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.96 E-value=1.4e+02 Score=24.20 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=40.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 138 KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 138 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
+.+.|++++..=. .++..+...+..-.|.++++.+.+. +..++..|.-.-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 4556766655433 3344444445566788888888655 66667777777788888888864
No 428
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.73 E-value=74 Score=23.66 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=23.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI 60 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 60 (373)
++..+...+..-.|.++++++.+.+..++..|.-..++.+.+.|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 44444555555566666666666555555555444444444444
No 429
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.52 E-value=4.6e+02 Score=27.04 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
..|...|...+++.+|++++-+ .+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylk-lk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLK-LQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHh-cc
Confidence 3488889999999999999988 54
No 430
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.44 E-value=1.4e+02 Score=21.26 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=21.7
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChH
Q 047393 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPS 129 (373)
Q Consensus 95 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~ 129 (373)
...+.+.++++.++.++..+|..+..++...|...
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEH 82 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHH
Confidence 44566666666666666666666666665544433
No 431
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.24 E-value=97 Score=23.01 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=17.6
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 122 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
+...+..-.|.++++.+.+.+..++..|.--.|+.+...|
T Consensus 10 l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 10 LLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333333444455555544444444444444444444443
No 432
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=37.15 E-value=2.5e+02 Score=23.52 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=26.5
Q ss_pred HHhHhcCCHHHHHHHHccCCC------CChhHHHHHHH-HHHhCCC--hHHHHHHHHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE------KNSLSWTFIIS-ARVNHGH--PSEALDLFKDK 138 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~------~d~~~~~~li~-~~~~~g~--~~~A~~l~~~m 138 (373)
-.....|++++|.+-++++.+ .-...|..+.. +++.++. +.+|.-++.-.
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l 95 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSIL 95 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 334455667777776665542 23345555554 5665554 34554444433
No 433
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.12 E-value=1.3e+02 Score=26.05 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=39.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHHcC----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 150 FRSALKAYALMGLVGEAYRLFLSMEEVYH----IEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 150 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
...+..-|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.++...+--+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33455668888999999999988854432 233455556667777778888877766544
No 434
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.98 E-value=3.2e+02 Score=24.77 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=38.7
Q ss_pred HhCCChHHHHHHHHH-HHHcCCCCCH----HHHHHHHHHHHccCC-HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc
Q 047393 123 VNHGHPSEALDLFKD-KQWRYTSMNP----TTFRSALKAYALMGL-VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~-m~~~g~~p~~----~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 196 (373)
.+...+++.....++ |++.+ -|+. ..|..++++---..+ -..|.+.++. ..+|.-|+.++|..
T Consensus 266 s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh----------lK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH----------LKQYAPLLAAFCSQ 334 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH----------HHhhhHHHHHHhcC
Confidence 334445555554443 45444 4554 467777766332221 1123333433 34688899999999
Q ss_pred CCHHHHH
Q 047393 197 GMFEEVL 203 (373)
Q Consensus 197 g~~~~A~ 203 (373)
|+.+-.+
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 9988544
No 435
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.29 E-value=1.4e+02 Score=28.46 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHH
Q 047393 116 TFIISARVNHGHPSEALDLFKDKQWRYTSM--NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193 (373)
Q Consensus 116 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 193 (373)
..|+.-|...|+..+|...++++ |++. -.+.+-+++-+.-+.|+-...+.++++.-. ....|-+.|-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~-----sglIT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK-----SGLITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----cCceeHHHhhhhh
Confidence 45777888888888888776654 3322 356778888888888887777777766643 3455667777777
Q ss_pred HhcC
Q 047393 194 GRAG 197 (373)
Q Consensus 194 ~~~g 197 (373)
.|..
T Consensus 585 ~RV~ 588 (645)
T KOG0403|consen 585 ERVY 588 (645)
T ss_pred hhhh
Confidence 7643
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.78 E-value=3.5e+02 Score=24.80 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHH---cCCCCCHhHHHHHHH-HHHh----cCCHHHHHHHHHhhCCCCCC---
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEV---YHIEPSEEHYSIMVE-ALGR----AGMFEEVLEFIKGIVPGKLC--- 215 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~g~~p~~~~~~~li~-~~~~----~g~~~~A~~~~~~~~~~~p~--- 215 (373)
...+......||+.|+.+.|.+.+....++ .|.+.|+..+.+=+. .|.. ...+++|..++++ .-..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~--GgDWeRrN 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE--GGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--CCChhhhh
Confidence 345666777899999999999888875443 256667665543222 2222 2344555555554 32222
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 216 -PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 216 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
..+|..+- |....++.+|..+|-+...
T Consensus 182 RlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 182 RLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 24666554 3345688888888877765
No 437
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=35.56 E-value=90 Score=21.38 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHh
Q 047393 63 NVGTQAQAYMTKRGLISHPAVGNCLININSR 93 (373)
Q Consensus 63 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 93 (373)
+.|..++..+.... +.++..||++...+.|
T Consensus 14 EmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 14 EMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 44444444443222 3445555555554443
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=35.21 E-value=5e+02 Score=26.42 Aligned_cols=115 Identities=10% Similarity=-0.110 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 047393 126 GHPSEALDLFKDKQWRY-TSMNPT--TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 126 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 202 (373)
.+.+.|..++....... ..+... ....+.......+...+|...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 34566777776653332 222222 2233333333332244555555543221 22444445555555688999999
Q ss_pred HHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 203 LEFIKGIVP--GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 203 ~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
...+.. |. ..-...-..=+.+++...|+.++|...|+.+..
T Consensus 332 ~~~i~~-L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLAR-LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHh-cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999988 55 222334444566777778999999999999855
No 439
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.11 E-value=1e+02 Score=25.77 Aligned_cols=163 Identities=10% Similarity=-0.010 Sum_probs=94.1
Q ss_pred CChhHHHHHHHHHHHc----CCHhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-
Q 047393 9 DVEIPWNLLLKACIKA----KDYEMVHELLERIQLCCGFIDSY----SICDILNSCLNPILLNVGTQAQAYMTKRGLIS- 79 (373)
Q Consensus 9 p~~~~~n~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~- 79 (373)
.|...+|.++.-+.+. ++.+-++++=.+....+..++-. ....-+..|-+.|++..--.+|-... .|.+.
T Consensus 6 l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~-~gce~~ 84 (233)
T PF14669_consen 6 LDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK-MGCEKF 84 (233)
T ss_pred CCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH-hhcCCH
Confidence 4566677777776654 44555555555555555555433 33444557778888887777776553 23321
Q ss_pred -chhHHH-HHHHHhHhcC--CH-----HHHHHHHccCCCCChh-------HHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047393 80 -HPAVGN-CLININSRCG--KI-----DDADLAFKSTPEKNSL-------SWTFIISARVNHGHPSEALDLFKDKQWRYT 143 (373)
Q Consensus 80 -~~~~~~-~li~~~~~~g--~~-----~~A~~~~~~m~~~d~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 143 (373)
+...+. .+..++.+.- +. +-|+.+-++-+. |.+ .=-+++-.|-+.-+|.+...+++.|.+..+
T Consensus 85 ~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~-~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i 163 (233)
T PF14669_consen 85 ADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQN-DEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQI 163 (233)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCcc-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112221 2222222221 10 123333332221 111 123456678888889999999999876422
Q ss_pred --------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 144 --------------SMNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 144 --------------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
.+--...|.....+.++|.+|.|..++++-
T Consensus 164 ~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 164 HFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 334467788888999999999999999853
No 440
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.90 E-value=2.8e+02 Score=26.01 Aligned_cols=139 Identities=10% Similarity=0.032 Sum_probs=76.3
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhHhcCCHHHHHHHHccCCCCChh--HHHHHHHHHHhCCChHHHH
Q 047393 57 LNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDADLAFKSTPEKNSL--SWTFIISARVNHGHPSEAL 132 (373)
Q Consensus 57 ~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~d~~--~~~~li~~~~~~g~~~~A~ 132 (373)
++.|+.+.+ +.+.+.|..|+... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 445666544 44456787777543 345666777889988877777655433321 1123345556778877655
Q ss_pred HHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHH
Q 047393 133 DLFKDKQWRYTSMNPT---TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH--YSIMVEALGRAGMFEEVLEFIK 207 (373)
Q Consensus 133 ~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 207 (373)
.+++ .|...+.. .-.+.+...+..|+.+-+..+++ . |..|+... -.+.+...+..|+.+-+..+++
T Consensus 86 ~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~----~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 86 ELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA----R-GADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh----C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 5553 33222111 11233444556778765555443 2 55554321 1234555567888877766666
Q ss_pred h
Q 047393 208 G 208 (373)
Q Consensus 208 ~ 208 (373)
.
T Consensus 157 ~ 157 (413)
T PHA02875 157 H 157 (413)
T ss_pred c
Confidence 5
No 441
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.86 E-value=3e+02 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=11.7
Q ss_pred HHHHhHhcCCHHHHHHHHccCC
Q 047393 87 LININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~ 108 (373)
-|....+.|++++|.+....+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444455566666655555443
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.84 E-value=1.9e+02 Score=21.60 Aligned_cols=81 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047393 127 HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 127 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 206 (373)
..++|..+.+.+...+. ....+-..-+..+.+.|++++| +..-. ....||...|-+|- -.+.|..+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~---~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQ---CHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHT---TS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcc---cCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 45677777777776653 2233333444556778888888 22222 23467777775543 45788888888888
Q ss_pred HhhCCCCCCH
Q 047393 207 KGIVPGKLCP 216 (373)
Q Consensus 207 ~~~~~~~p~~ 216 (373)
.+ +...-++
T Consensus 93 ~r-la~~g~~ 101 (116)
T PF09477_consen 93 TR-LASSGSP 101 (116)
T ss_dssp HH-HCT-SSH
T ss_pred HH-HHhCCCH
Confidence 87 5433333
No 443
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.51 E-value=71 Score=21.31 Aligned_cols=52 Identities=6% Similarity=-0.167 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047393 42 GFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94 (373)
Q Consensus 42 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 94 (373)
+.|+...++.++..+++-.-++.+...+.+..+.|. .+..+|---+..++|.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 346667788888888888888899999999888884 5667776666666653
No 444
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.41 E-value=2.2e+02 Score=22.37 Aligned_cols=61 Identities=11% Similarity=-0.038 Sum_probs=37.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047393 36 RIQLCCGFIDSYSICDILNSCLNP-ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 36 ~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 97 (373)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|----++.+.+.|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3556677766543 2344444433 45667888888888887666666554555666666543
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.18 E-value=2.3e+02 Score=22.29 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 134 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
+...+.+.|++++..= ..++..+.+.++.-.|.++|+.+.+. +...+..|.-.-++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCEE
Confidence 4445566666554432 23445555565557788888888654 55555666666677778777654
No 446
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.56 E-value=2.8e+02 Score=23.11 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHHHhHhcCCHHHHHHHHccCC-CCChhHHHHHHHHHHhCC
Q 047393 87 LININSRCGKIDDADLAFKSTP-EKNSLSWTFIISARVNHG 126 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~~g 126 (373)
.+..|.+.|.+++|.+++++.. .++......-+....+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 4556888888888888887765 345444444444444443
No 447
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.60 E-value=2.3e+02 Score=23.03 Aligned_cols=60 Identities=5% Similarity=-0.098 Sum_probs=37.7
Q ss_pred HHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047393 37 IQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 37 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 97 (373)
+...|++++..-. .++..+....+.-.|.++++.+.+.+...+..|----|+.+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4556777665433 34444444455667888888888887666666554555666666643
No 448
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.57 E-value=86 Score=23.57 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=23.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 117 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
.++..+...+.+-.|.++++.+.+.+...+..|.---|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344445555445556666666666555555555544455544444
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.52 E-value=4.4e+02 Score=24.97 Aligned_cols=26 Identities=8% Similarity=-0.025 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHh
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQL 39 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~ 39 (373)
+.-+-+-|..+|+++.|++.|.+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~Rd 178 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARD 178 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhh
Confidence 44555556666666666666666443
No 450
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.43 E-value=4.3e+02 Score=24.81 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=28.0
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC------CCchHHHHHHHHH
Q 047393 20 ACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN------PILLNVGTQAQAY 71 (373)
Q Consensus 20 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~ 71 (373)
.+.+.+++..|.++|+++.+..+.|+...+-..+..+++ .-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 445667777777777777766555544433333322222 2344555555543
No 451
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.25 E-value=73 Score=32.38 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHccCCHHHHHHHHHHhHHHcC-CCC
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT----------TFRSALKAYALMGLVGEAYRLFLSMEEVYH-IEP 181 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g-~~p 181 (373)
.+-..++-+|....+++...++.+.++.- ||.. .|...++--.+-|+-++|+...-.+.+..| +.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 44556777888888999999999988764 4432 344555555667888999888777665534 567
Q ss_pred CHhH-----HHHH--HHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 182 SEEH-----YSIM--VEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 182 ~~~~-----~~~l--i~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
|... |--+ -..|-..+..+.|.+.|+++++..|..
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 7532 2211 123444567778999999988878865
No 452
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.86 E-value=2.4e+02 Score=23.60 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=12.7
Q ss_pred HhCCChHHHHHHHHHHHH
Q 047393 123 VNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~ 140 (373)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356777888777777764
No 453
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.09 E-value=5.7e+02 Score=25.82 Aligned_cols=189 Identities=13% Similarity=0.160 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCc-------hHHHHHHHHHHHHcCCCCchh-
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-------LNVGTQAQAYMTKRGLISHPA- 82 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~~~~~- 82 (373)
.-.|- +|--|.++|++++|.++.++..+ ........|...+..+....+ -+....-|++..+.....|+.
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 34454 66678999999999999866554 355666778888898877532 234555566555544322432
Q ss_pred --HHHHHHHHhHhcCCHHH--------HHHHH-------ccCCCC-----ChhHHH---------------------HHH
Q 047393 83 --VGNCLININSRCGKIDD--------ADLAF-------KSTPEK-----NSLSWT---------------------FII 119 (373)
Q Consensus 83 --~~~~li~~~~~~g~~~~--------A~~~~-------~~m~~~-----d~~~~~---------------------~li 119 (373)
+|..+ +++.-.+. .++.+ ++-... +..++. ...
T Consensus 190 ~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf 265 (613)
T PF04097_consen 190 RAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYF 265 (613)
T ss_dssp HHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HH
T ss_pred HHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHH
Confidence 44433 22221000 11110 000000 011111 122
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh---c
Q 047393 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR---A 196 (373)
Q Consensus 120 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~---~ 196 (373)
..+.-.|+++.|.+.+-+ ..+...|.+.+...+..|.-.+-.+... ..+.....-.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344556778888777665 2233445566655555543322222111 2221110111222557788888887 4
Q ss_pred CCHHHHHHHHHhhCC
Q 047393 197 GMFEEVLEFIKGIVP 211 (373)
Q Consensus 197 g~~~~A~~~~~~~~~ 211 (373)
.+..+|.++|-- +.
T Consensus 341 td~~~Al~Y~~l-i~ 354 (613)
T PF04097_consen 341 TDPREALQYLYL-IC 354 (613)
T ss_dssp T-HHHHHHHHHG-GG
T ss_pred cCHHHHHHHHHH-HH
Confidence 678889998876 55
No 454
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.01 E-value=4.8e+02 Score=24.94 Aligned_cols=144 Identities=10% Similarity=-0.003 Sum_probs=68.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH--HHHHHHH-----HcCCCchHHHHHHHHHHHHcCCCCchhH--HHHH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYS--ICDILNS-----CLNPILLNVGTQAQAYMTKRGLISHPAV--GNCL 87 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~l 87 (373)
.+...++.|+.+- ++.+.+.|..|+... ..+.+.. .+..+.. ++.+.+.+.|..++... ..+.
T Consensus 38 ~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCch
Confidence 3444555666544 344455666665432 1223333 3444443 34444556665554321 1233
Q ss_pred HHHhH--hcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcc
Q 047393 88 ININS--RCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF--RSALKAYALM 160 (373)
Q Consensus 88 i~~~~--~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~ 160 (373)
+...+ +.|+.+-+..+++.-... +...++ .+...+..|. .-.++++.+.+.|..++...- .+.+...+..
T Consensus 110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGEN-LLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK 186 (480)
T ss_pred hhHHHhcccChHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh
Confidence 44444 777777777777654433 222233 3334444552 112345555566665543322 2344555666
Q ss_pred CCHHHHHHHHH
Q 047393 161 GLVGEAYRLFL 171 (373)
Q Consensus 161 g~~~~a~~~~~ 171 (373)
|+.+-+..+++
T Consensus 187 ~~~~iv~~Ll~ 197 (480)
T PHA03100 187 GNIDVIKFLLD 197 (480)
T ss_pred CCHHHHHHHHH
Confidence 66665554443
No 455
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.77 E-value=2.7e+02 Score=21.94 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHhHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 144 SMNPTTFRSALKAYALMG---LVGEAYRLFLSMEEVYHIEP--SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 144 ~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.++..+--.+.-++.++. ++.++..+++.+.+. . .| .....--|.-++.|.++++++.++.+..++.+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 455555555555555554 456777888887652 2 23 2223334556788899999999988886665554
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.70 E-value=1.1e+02 Score=22.64 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=17.8
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCC
Q 047393 85 NCLININSRCGKIDDADLAFKSTPEK 110 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (373)
..++.-|...|+.++|...++++..|
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 34566677778888888888887655
No 457
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.56 E-value=61 Score=22.12 Aligned_cols=34 Identities=18% Similarity=-0.066 Sum_probs=19.6
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 047393 23 KAKDYEMVHELLERIQLCCGFIDSYSICDILNSC 56 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 56 (373)
..|+.+.+.+++++..+.|..|.......+..++
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3566666777777766666666555544444444
No 458
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.34 E-value=2.2e+02 Score=20.89 Aligned_cols=26 Identities=15% Similarity=0.049 Sum_probs=18.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCC
Q 047393 85 NCLININSRCGKIDDADLAFKSTPEK 110 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (373)
..++.-|...+++++|...+.++..|
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~ 31 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLP 31 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCC
Confidence 34566677778888888888877655
No 459
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.16 E-value=81 Score=23.71 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYS 48 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 48 (373)
++..+...+..-.|.++++.|.+.+...+..|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~T 44 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLAT 44 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHH
Confidence 44444444445555555555555554444443
No 460
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.01 E-value=2.1e+02 Score=20.42 Aligned_cols=62 Identities=11% Similarity=-0.099 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
....|..-++.-.... .+++ ++|+.....|+..|..+|..+++.+.-+-..+...++++.|-
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445555444332222 2333 889999999999999999999999888888888899998875
No 461
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=30.00 E-value=69 Score=30.59 Aligned_cols=106 Identities=14% Similarity=0.008 Sum_probs=65.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH-hHHHHHHHHHHhc
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR-SALKAYALMGLVGEAYRLFLSMEEVYHIEPSE-EHYSIMVEALGRA 196 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~ 196 (373)
.+.+.+.+.++.|..++.+..+. .||...|- .--.++.+.+++..|..=.....+. .|+. ..|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 34455677888888888888775 56655443 3347788888888877655555443 3431 2221112333445
Q ss_pred CCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 047393 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH 229 (373)
Q Consensus 197 g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~ 229 (373)
++..+|+..|+....+.|+..-...++.-|-+.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 667777777777445778777777777666443
No 462
>PRK10941 hypothetical protein; Provisional
Probab=29.99 E-value=3.9e+02 Score=23.64 Aligned_cols=74 Identities=11% Similarity=-0.066 Sum_probs=41.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC---CCCCHHHHHHHHHHH
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP---GKLCPLIWRTLLLSS 226 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~li~~~ 226 (373)
+.+-.+|.+.++++.|..+.+.+..- .| ++.-+---.-.|.+.|.+..|..=++..++ ..|+.......+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l---~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF---DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34556677777777777777777542 44 333344344456677777777664444222 344445555555544
Q ss_pred H
Q 047393 227 R 227 (373)
Q Consensus 227 ~ 227 (373)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 463
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.86 E-value=1.7e+02 Score=19.27 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=20.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HccCCHHHHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY-----ALMGLVGEAYRL 169 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~~ 169 (373)
..|++=+|-++++++=..--.|....+-.+|... .+.|+...|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4556666666666553321122333444444332 234555555443
No 464
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.47 E-value=1.3e+02 Score=20.77 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHHc
Q 047393 92 SRCGKIDDADLAFK 105 (373)
Q Consensus 92 ~~~g~~~~A~~~~~ 105 (373)
+..|+.+-+..+++
T Consensus 34 ~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 34 AENGNLEIVKLLLE 47 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 33444444333333
No 465
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.44 E-value=2.3e+02 Score=20.80 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcC
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI--LLNVGTQAQAYMTKRG 76 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g 76 (373)
...++..|...+++++|.+-+.++..... -......++..+...+ .-+....++..+.+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 34577889999999999999888764321 2233444445444432 3444556666665554
No 466
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=28.96 E-value=18 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.4
Q ss_pred CCHhHHHHHHHHHHhcC-CCCCHH
Q 047393 25 KDYEMVHELLERIQLCC-GFIDSY 47 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~g-~~p~~~ 47 (373)
-+++.|+..|.++...| ++|+.+
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCHHHHHHHHHHHHHcCCCChHhc
Confidence 47889999999998776 666543
No 467
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.91 E-value=3.7e+02 Score=23.01 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=63.9
Q ss_pred HHHHHHHh--HhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 84 GNCLININ--SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 84 ~~~li~~~--~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
|..++.++ ...+++++|.+.+-.-.-. ..-..-++.++...|+.+.|+.+++.+.-..- +......++.+ ...+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcC
Confidence 44455554 4457788888877443211 11122478888889999999999887543221 22333333444 4568
Q ss_pred CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcC
Q 047393 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAG 197 (373)
Q Consensus 162 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 197 (373)
.+.+|+.+-+..... -....+..++..+....
T Consensus 155 ~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred CHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHh
Confidence 999999888766332 11456667777666444
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.83 E-value=2.8e+02 Score=28.08 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=53.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHH------HHHHHHHHhHHHcCCCCCHhHHHH
Q 047393 117 FIISARVNHGHPSEALDLFKDKQWR--YTSMNPTTFRSALKAYALMGLVG------EAYRLFLSMEEVYHIEPSEEHYSI 188 (373)
Q Consensus 117 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~------~a~~~~~~m~~~~g~~p~~~~~~~ 188 (373)
+|..+|..+|++..+.++++.+... |-+--...||..|+...+.|.++ .|.+++++. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 7899999999999999999998754 22333457888888888998754 344444444 34567788887
Q ss_pred HHHHHHh
Q 047393 189 MVEALGR 195 (373)
Q Consensus 189 li~~~~~ 195 (373)
|+.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7765443
No 469
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.67 E-value=4.5e+02 Score=23.90 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHh----------CCChHHHHHHH
Q 047393 66 TQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVN----------HGHPSEALDLF 135 (373)
Q Consensus 66 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~----------~g~~~~A~~l~ 135 (373)
.++++.|.+.++.|.-.++.-+.-.+.+.=.+.+.+.+++.+.... .-|..|+..||. .|++..-++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4678888888888888888888888888888888888888876321 114444444432 57777776666
Q ss_pred HH
Q 047393 136 KD 137 (373)
Q Consensus 136 ~~ 137 (373)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 43
No 470
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=28.52 E-value=74 Score=22.28 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=25.4
Q ss_pred CChhHHHHHHHhHhCceEEEecCCccccccCCc
Q 047393 327 GYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359 (373)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (373)
.+..+|..+-..+++.|++.+-... |+|+|+.
T Consensus 45 ~~R~eAv~~gq~Ll~~g~i~hV~~~-~~F~D~~ 76 (81)
T cd04448 45 ATRVQAIAIGQALLDAGWIECVSDD-DLFRDEY 76 (81)
T ss_pred CCHHHHHHHHHHHHHCCCEEecCCC-CccccCc
Confidence 4557899999999999998775554 7898864
No 471
>PRK02287 hypothetical protein; Provisional
Probab=28.38 E-value=3.3e+02 Score=22.25 Aligned_cols=60 Identities=15% Similarity=-0.023 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW-RTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
..+..++..++.-.|..++|.++++. .+..++-... .-+++.|.+..+.++..++-++..
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~-F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSK-FKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhh-CCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34556667777777777777777777 6644443333 346677777777776666555443
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=4.5e+02 Score=23.71 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (373)
...+-.+.+-|++.++.+.+.+++++.|
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3445555566666666666666555433
No 473
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=28.04 E-value=5.2e+02 Score=24.77 Aligned_cols=82 Identities=9% Similarity=-0.014 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH--------hHhcCCHHHHHHHHccCCC---
Q 047393 41 CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI--------NSRCGKIDDADLAFKSTPE--- 109 (373)
Q Consensus 41 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~--- 109 (373)
.+.||.++.|-+.+.++..-..+-...+++.-.+.+ .|-.+.+-+||-. -.++..-++|.++++.|+.
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 467777776655555444445555566666666655 4544444443321 1344566778888887763
Q ss_pred -CChhHHHHHHHHHH
Q 047393 110 -KNSLSWTFIISARV 123 (373)
Q Consensus 110 -~d~~~~~~li~~~~ 123 (373)
.|+.-+-+|...|+
T Consensus 257 ~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYS 271 (669)
T ss_pred cccchhHHHHHHHHh
Confidence 25555555555544
No 474
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.80 E-value=5e+02 Score=24.19 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=11.3
Q ss_pred HcCCCchHHHHHHHHHHH
Q 047393 56 CLNPILLNVGTQAQAYMT 73 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~ 73 (373)
|...++++.|+.+++..+
T Consensus 193 ciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICV 210 (422)
T ss_pred eeccccHHHHHHHHHHHH
Confidence 344566777777776654
No 475
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=27.25 E-value=2.9e+02 Score=21.24 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH---HHHHHHHcC-------CCchHHHHHHHHHHHHcCCCCchhH
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSI---CDILNSCLN-------PILLNVGTQAQAYMTKRGLISHPAV 83 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~---~~ll~~~~~-------~~~~~~a~~~~~~m~~~g~~~~~~~ 83 (373)
+...++.+.+..---.++++.+++....-.|..+.- +.-++.|-. .+.+.-.-.++..+++.++.-....
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 455555666666666666666666655444443321 112233321 1223333444555555665444444
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccC
Q 047393 84 GNCLININSRCGKIDDADLAFKST 107 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m 107 (373)
+.-+=..+.+..+..||-.+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 444444555555666666666543
No 476
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=27.24 E-value=3.6e+02 Score=28.30 Aligned_cols=137 Identities=13% Similarity=0.010 Sum_probs=58.2
Q ss_pred CCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHH
Q 047393 58 NPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEAL 132 (373)
Q Consensus 58 ~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~ 132 (373)
..|+.+ +.+.+++.|..||... ..+.++..+..|+.+-+.-+++.-..+ |..-.+.|..+ +..|+.+-+.
T Consensus 534 ~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A-~~~g~~~iv~ 608 (823)
T PLN03192 534 STGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA-ISAKHHKIFR 608 (823)
T ss_pred HcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHH-HHhCCHHHHH
Confidence 445543 3344445666665433 234445555666666555555543322 22222223222 2333333222
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHh
Q 047393 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY--SIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 133 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 208 (373)
-++ +.+...+..+-...+...+..|+.+-+..+++. |..++.... .+-+..-++.|+.+-+.-+++.
T Consensus 609 ~L~----~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-----Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 677 (823)
T PLN03192 609 ILY----HFASISDPHAAGDLLCTAAKRNDLTAMKELLKQ-----GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN 677 (823)
T ss_pred HHH----hcCcccCcccCchHHHHHHHhCCHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence 222 222222222223345555666666655555431 444332111 1222333455666655555543
No 477
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.08 E-value=8e+02 Score=26.29 Aligned_cols=205 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCCCc-------hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 047393 51 DILNSCLNPILLNVGTQAQAYMTKRGLISH-------PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123 (373)
Q Consensus 51 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~ 123 (373)
..++.+...+++.+| |..|+++.+..| ....+.+=...-+.++.+---.++.++.+.|+.. ++-..+.
T Consensus 699 ~~ir~~Ld~~~Y~~A---f~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~~~ 773 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEA---FELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKDTY 773 (928)
T ss_pred HHHHHHHhhccHHHH---HHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--ccccccc
Q ss_pred ----------------hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHhHHHcCCCCCHhH
Q 047393 124 ----------------NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG--LVGEAYRLFLSMEEVYHIEPSEEH 185 (373)
Q Consensus 124 ----------------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~m~~~~g~~p~~~~ 185 (373)
..++.....+.+.+..+. ..-...-...+|.+|.+.+ ++++|+.+..++++.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~--------- 843 (928)
T PF04762_consen 774 PPSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE--------- 843 (928)
T ss_pred ccccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCccchhheecceEEEEe
Q 047393 186 YSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGMYVGCWIEIQNKIYEFV 265 (373)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~y~~~~~~~~~~~~~~~ 265 (373)
+...|.+.++-+.=..+-...|+.-+..| +++.|.-+.++-.+ +|..|. ..++.-..+-...
T Consensus 844 ------------~~~~ae~alkyl~fLvDvn~Ly~~ALG~Y----Dl~Lal~VAq~SQk-DPKEYL-PfL~~L~~l~~~~ 905 (928)
T PF04762_consen 844 ------------DPESAEEALKYLCFLVDVNKLYDVALGTY----DLELALMVAQQSQK-DPKEYL-PFLQELQKLPPLY 905 (928)
T ss_pred ------------ChHHHHHHHhHheeeccHHHHHHHHhhhc----CHHHHHHHHHHhcc-ChHHHH-HHHHHHHhCChhh
Q ss_pred cCCcchHHHHHHHHHHHHHHHHCC
Q 047393 266 SNEELTSEVSDKLAEIEENMKELG 289 (373)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~m~~~g 289 (373)
.+ +....+.++-+.+++.+.+.|
T Consensus 906 rr-y~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 906 RR-YKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred ee-eeHhhhhCCHHHHHHHHHhhC
No 478
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.08 E-value=7.2e+02 Score=25.74 Aligned_cols=107 Identities=8% Similarity=-0.069 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHhHhcCCHHHHHHHHccC----CCCChhH
Q 047393 41 CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLI--SHPAVGNCLININSRCGKIDDADLAFKST----PEKNSLS 114 (373)
Q Consensus 41 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~d~~~ 114 (373)
++..+......++..+ .|+..++..+++.+...... .+... =..+.+.+.+.+. .+.....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 3455566666665543 67888888887776432100 00000 0112233333221 0111122
Q ss_pred H---HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 115 W---TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 115 ~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
| ++++.+ .+.++++.|+..+.+|.+.|..|....-..++.+.-..|
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 3 233332 346889999999999999998887666666665554444
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.67 E-value=2e+02 Score=21.68 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+++-+.+....++|+++++.|.++| ..+....+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3344455566777777777777776 444444444433
No 480
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.77 E-value=2.5e+02 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=11.9
Q ss_pred HHHHccCCHHHHHHHHHHhHH
Q 047393 155 KAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~~ 175 (373)
......|++++|...+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334455666666666665543
No 481
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=25.72 E-value=4.6e+02 Score=23.04 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh--CC-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 188 IMVEALGRAGMFEEVLEFIKGI--VP-GKL-----CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~--~~-~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.|+.-+.+.|+++.|-.++--+ .+ ... +...-..++......++++.+.++.+-+..++|..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 4666777778888776654321 22 111 23445566777788999999999999999888754
No 482
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.33 E-value=5.8e+02 Score=24.05 Aligned_cols=171 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHH-HHcC---------------
Q 047393 18 LKACIKAKDYEMVHELLERIQL-----CCGFIDSYSICDILNSCLNPILLNVGTQAQAYM-TKRG--------------- 76 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m-~~~g--------------- 76 (373)
+..++ .++.+.|++-+-...+ .....+...+..+++.|...++|+.--+....+ +++|
T Consensus 20 ~~~la-~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~ 98 (439)
T KOG1498|consen 20 ANNLA-QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMT 98 (439)
T ss_pred hhhhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred ---CCCchhHHHHHHHHhH-------------------------hcCCHHHHHHHHccCCCCChhHHHHH----------
Q 047393 77 ---LISHPAVGNCLININS-------------------------RCGKIDDADLAFKSTPEKNSLSWTFI---------- 118 (373)
Q Consensus 77 ---~~~~~~~~~~li~~~~-------------------------~~g~~~~A~~~~~~m~~~d~~~~~~l---------- 118 (373)
-.||..+--.+|..+- .+|++++|..++.+.+ +.||.++
T Consensus 99 y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 99 YIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ---VETYGSMEKSEKVAFIL 175 (439)
T ss_pred hccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhHHHHHHHHHH
Q ss_pred --HHHHHhCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH
Q 047393 119 --ISARVNHGHPSEALDLFKDKQWRYTSMNPT------TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190 (373)
Q Consensus 119 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 190 (373)
+..|...+++-.|--+-+++...=+.-+.. -|+.++....+.+.+=.+-+.|+.......+.-|+.-|...+
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL 255 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVL 255 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhh
Q ss_pred HH
Q 047393 191 EA 192 (373)
Q Consensus 191 ~~ 192 (373)
..
T Consensus 256 ~~ 257 (439)
T KOG1498|consen 256 RS 257 (439)
T ss_pred hh
No 483
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.23 E-value=3.7e+02 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=15.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc
Q 047393 222 LLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 222 li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+.....+.|+.++|.+.|.+++.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHc
Confidence 33445667777777777777765
No 484
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.95 E-value=5.1e+02 Score=27.35 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHccCCH--HHHHHHHHHhHHHcCCCCCHhHHHH-
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQW---RYTSMNPTTFRSALKAYALMGLV--GEAYRLFLSMEEVYHIEPSEEHYSI- 188 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~~m~~~~g~~p~~~~~~~- 188 (373)
|..|+..|...|+.++|+++|.+... ..-.--..-+--++....+.+.. +-.+++-+-..++ .-.-....++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTSE 585 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cchhheeeeecc
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHH
Q 047393 189 -----------MVEALGRAGMFEEVLEFIKGIVP--GKLCPLIWRTLLLSSRV 228 (373)
Q Consensus 189 -----------li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~li~~~~~ 228 (373)
-+-.|+.....+-+..+++.++. ..++....+.++.-|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
No 485
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.74 E-value=2e+02 Score=20.21 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=17.7
Q ss_pred CCCChhHHH-HHHHHHHHcCCHhHHHHHHHHHHhcC
Q 047393 7 ISDVEIPWN-LLLKACIKAKDYEMVHELLERIQLCC 41 (373)
Q Consensus 7 ~~p~~~~~n-~li~~~~~~g~~~~A~~l~~~m~~~g 41 (373)
|+-+..-|| ++++-+.++.--++|+++++-|.++|
T Consensus 26 ~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 26 PKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred ccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333333343 34444555555555666666555554
No 486
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=24.74 E-value=2.7e+02 Score=19.96 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=28.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 206 (373)
.+-.-|-+.|..+.+.+++.......|- ..|...|+.++..++.-.-|..++
T Consensus 37 ~I~~~y~r~gL~EqvyQ~L~~W~~~eg~---~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 37 NLAYEYDREGLYEQAYQLLRRFIQSEGK---KATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHccchHHHHHHh
Confidence 3333445555666666666665444232 255556666666666655555544
No 487
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=3e+02 Score=24.03 Aligned_cols=86 Identities=10% Similarity=-0.077 Sum_probs=62.0
Q ss_pred HHHccCCHHHHHHHHHHhHHHcCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHcCCHH
Q 047393 156 AYALMGLVGEAYRLFLSMEEVYHIEPSE-EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTL-LLSSRVHGDMK 233 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~ 233 (373)
-|-....++.|..-|.+.. -+.|++ ..|+.=+..+.+..+++.+.+=-.+++.+.||.+--..+ -.++.....++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3555667888888776664 347777 455666777788888888888777767778877544444 45566778899
Q ss_pred HHHHHHHHHhc
Q 047393 234 LAKYALDKLLE 244 (373)
Q Consensus 234 ~A~~~~~~m~~ 244 (373)
+|...+.+..+
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999888865
No 488
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.97 E-value=6.3e+02 Score=23.99 Aligned_cols=158 Identities=15% Similarity=0.053 Sum_probs=82.3
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---------CCCC
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPE------KNSLSWTFIISARVNHGHPSEALDLFKDKQWR---------YTSM 145 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p 145 (373)
...+.-+.+.|..+|+++.|++.|.+... .-+..|-.+|..-.-.|+|........+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 34567788889999999999999988552 12334545555555567777666666555443 1233
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcC-----CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC----CCCC
Q 047393 146 NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH-----IEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP----GKLC 215 (373)
Q Consensus 146 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g-----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p~ 215 (373)
-...+..+...+.+ ....|.+.|-....... +.| |+.+| ..+.+++--++-+--..+... .. .+-.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iY-ggLcALAtfdr~~Lk~~vi~n-~~Fk~flel~ 305 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIY-GGLCALATFDRQDLKLNVIKN-ESFKLFLELE 305 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHH-HhhHhhccCCHHHHHHHHHcc-hhhhhHHhcC
Confidence 33444444444333 55555555443322211 123 33444 334444444443333333222 11 1234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 216 PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+..+..+.+-| .+++....++++++..
T Consensus 306 Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 306 PQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred hHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 45555554444 3466666666666554
No 489
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=23.88 E-value=2.2e+02 Score=21.14 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHccC
Q 047393 126 GHPSEALDLFKDKQ--WRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 126 g~~~~A~~l~~~m~--~~g~~p~~~t~~~ll~~~~~~g 161 (373)
|.+++....+=+.. ..+..+|...+...+.++...|
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 55554443332222 4455666666666666655443
No 490
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=23.77 E-value=91 Score=21.86 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.9
Q ss_pred cCChhHHHHHHHhHhCceEEEecCCccccccCCc
Q 047393 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359 (373)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (373)
.....+|..+..+|++.|++..-.+ -|+|.++-
T Consensus 46 ~~~r~eAv~lgq~Ll~~g~I~hv~~-~~~F~d~~ 78 (83)
T cd04449 46 VDTREEAVELGQELMNEGLIEHVSG-RHPFLDGF 78 (83)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCC-CCCccCCC
Confidence 3456789999999999999866543 78888874
No 491
>PRK14700 recombination factor protein RarA; Provisional
Probab=23.69 E-value=5.5e+02 Score=23.19 Aligned_cols=123 Identities=13% Similarity=-0.112 Sum_probs=72.4
Q ss_pred HhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047393 27 YEMVHELLERIQLC-------CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDD 99 (373)
Q Consensus 27 ~~~A~~l~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 99 (373)
.++..+++++.... .+..+......++..+ .||...|+..++.+.......+.. .| ..+.
T Consensus 41 ~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a--~GDaR~aLN~LE~a~~~~~~~~~~----~i-------t~~~ 107 (300)
T PRK14700 41 LVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN--EGDCRKILNLLERMFLISTRGDEI----YL-------NKEL 107 (300)
T ss_pred HHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc--CCHHHHHHHHHHHHHhhccccCCC----cc-------CHHH
Confidence 34455555555431 2456667777776654 488999998888865311011100 00 1222
Q ss_pred HHHHHccC-C--CCChhHHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 100 ADLAFKST-P--EKNSLSWTFIISARV---NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 100 A~~~~~~m-~--~~d~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
..++..+- . .++-..+.-+|++|. +..+++.|+-.+-+|.+.|..|....=..++.++-.-|.
T Consensus 108 ~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 108 FDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred HHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 23332211 1 123334444677775 457899999999999999988888777777777766663
No 492
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.28 E-value=1.8e+02 Score=20.54 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEF 205 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 205 (373)
.+.+.+++....++.| ...|...|+.++.++|.-+-|..+
T Consensus 46 ~eq~~~mL~~W~~r~g---~~AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 46 KMQAKQLLVAWQDREG---SQATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred HHHHHHHHHHHHHhcC---ccccHHHHHHHHHHcCcHHHHHhh
Confidence 3445555555544422 234555666666666655555544
No 493
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.27 E-value=1.3e+02 Score=15.64 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHhHHH
Q 047393 162 LVGEAYRLFLSMEEV 176 (373)
Q Consensus 162 ~~~~a~~~~~~m~~~ 176 (373)
+.+.|..+|+.+...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555443
No 494
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=23.11 E-value=63 Score=21.50 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHCCCccCCchhhhHHHHHHhhhccCCCCCcEEEEeeccccCChhHHHHHHHhHhCceEEEecCC
Q 047393 272 SEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRVIKSVGMCGYSHSACRFMSTIIERELVVKDPG 350 (373)
Q Consensus 272 ~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 350 (373)
..+.+.+.-+.+.+.+.|+.|+..- ++-++++ .....+...+..+.++|.+.++++
T Consensus 6 ~rQ~~vL~~I~~~~~~~G~~Pt~rE-----Ia~~~g~------------------~S~~tv~~~L~~Le~kG~I~r~~~ 61 (65)
T PF01726_consen 6 ERQKEVLEFIREYIEENGYPPTVRE-----IAEALGL------------------KSTSTVQRHLKALERKGYIRRDPG 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSS---HHH-----HHHHHTS------------------SSHHHHHHHHHHHHHTTSEEEGCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHH-----HHHHhCC------------------CChHHHHHHHHHHHHCcCccCCCC
Confidence 3445667777888899999997542 1122222 245677888888989999887765
No 495
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.46 E-value=9.6e+02 Score=25.56 Aligned_cols=111 Identities=8% Similarity=-0.140 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
.+|...=-..+..+.+.+. .++...+.++.+ .+|...-...+.++.+.+........+..+++. +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 4555555555666666654 334444444443 234444444444444332211111222223222 444444444
Q ss_pred HHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCC
Q 047393 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHG 126 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g 126 (373)
+.++...+.- ....+...+..+|...-...+.++.+.+
T Consensus 705 ~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 705 LDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred HHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 4544433211 1122334444455444444444444433
No 496
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=22.46 E-value=32 Score=22.16 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHHHhHhCceEEEecCCccccccCCccCCCCCccccc
Q 047393 333 CRFMSTIIERELVVKDPGSFHHFKDGKCSCKDAYGSQS 370 (373)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (373)
+..++...+..+. .-|...--+-|+||+.+|
T Consensus 22 Lq~ISsvl~t~iF-------DPFE~cyyrgGsfwEieS 52 (64)
T PF03622_consen 22 LQHISSVLNTEIF-------DPFEVCYYRGGSFWEIES 52 (64)
T ss_pred HHHHHHHHhhhhc-------CCeeEEEEecCcEEEeec
Confidence 5666777765554 335555567899999887
No 497
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.44 E-value=3.6e+02 Score=20.59 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 047393 130 EALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFLS 172 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 172 (373)
++.++|..|...|+.-. ...|..-...+...|++++|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66677777777665443 34555556666666777777776653
No 498
>COG5210 GTPase-activating protein [General function prediction only]
Probab=21.63 E-value=5.2e+02 Score=25.18 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHcCCCch-HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH
Q 047393 27 YEMVHELLERIQLCCGFIDSY-----SICDILNSCLNPILL-NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA 100 (373)
Q Consensus 27 ~~~A~~l~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 100 (373)
-+.|...+..+.+...-|+.. ........+.. -+ +..-++++.+.+.|+.....++..++..+.+.-.++.|
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~--~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~ 396 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDD--LVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYA 396 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHH
Confidence 466777777776632223322 11211111111 11 23457888999999999999999999999999999999
Q ss_pred HHHHccCCC
Q 047393 101 DLAFKSTPE 109 (373)
Q Consensus 101 ~~~~~~m~~ 109 (373)
.++++.+--
T Consensus 397 lriwD~lf~ 405 (496)
T COG5210 397 LRIWDCLFL 405 (496)
T ss_pred HHHHHHHHH
Confidence 999987753
No 499
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.46 E-value=7e+02 Score=23.64 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=37.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHc-C----CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVY-H----IEP-SEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
+...+++.++-.|++..|.++++.+.-.. + +++ .+.++-.+.-+|.=.+++.+|.+.|..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777788888888888877652110 0 111 233444555566667777777777777
No 500
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.23 E-value=1.3e+02 Score=21.74 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=24.7
Q ss_pred cCChhHHHHHHHhHhCceEEEecCCccccccCCc
Q 047393 326 CGYSHSACRFMSTIIERELVVKDPGSFHHFKDGK 359 (373)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (373)
+...++|..+-..+++.|++-.-.. -|+|+|+-
T Consensus 53 ~~tR~eAv~~gq~Ll~~gii~HV~~-~h~F~D~~ 85 (93)
T cd04440 53 CRTREEAVILGVGLCNNGFMHHVLE-KSEFKDEP 85 (93)
T ss_pred CCCHHHHHHHHHHHHhCCCEEecCC-CcCcCCcC
Confidence 4456789999999999999855443 37788763
Done!