Query 047393
Match_columns 373
No_of_seqs 374 out of 3087
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 18:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.1E-33 3.7E-38 271.0 22.6 185 11-196 26-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.2E-32 4E-37 263.7 21.5 201 28-229 7-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 7.3E-25 2.5E-29 214.8 22.6 321 3-342 76-504 (597)
4 2xpi_A Anaphase-promoting comp 99.9 2.4E-23 8.2E-28 204.0 25.2 242 3-249 295-549 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.8 2.5E-18 8.4E-23 159.5 26.1 292 10-341 66-367 (388)
6 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-20 3.9E-25 187.1 8.9 149 80-230 126-286 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 1.4E-17 4.8E-22 154.4 29.2 234 10-249 100-372 (388)
8 3spa_A Mtrpol, DNA-directed RN 99.8 9E-21 3.1E-25 187.8 3.3 146 46-197 127-286 (1134)
9 2y4t_A DNAJ homolog subfamily 99.8 2.6E-17 8.8E-22 155.3 25.3 236 9-249 24-290 (450)
10 2y4t_A DNAJ homolog subfamily 99.8 4.6E-17 1.6E-21 153.6 26.9 189 56-249 153-362 (450)
11 3mkr_A Coatomer subunit epsilo 99.8 1.5E-16 5.3E-21 141.9 23.7 228 12-249 35-268 (291)
12 4eqf_A PEX5-related protein; a 99.8 4E-17 1.4E-21 149.9 20.2 238 8-249 62-314 (365)
13 3hym_B Cell division cycle pro 99.7 1.1E-15 3.7E-20 137.6 25.3 236 9-249 20-269 (330)
14 1fch_A Peroxisomal targeting s 99.7 4.8E-16 1.7E-20 142.5 22.4 235 10-248 63-317 (368)
15 3hym_B Cell division cycle pro 99.7 2E-15 6.8E-20 135.9 23.9 237 10-249 55-303 (330)
16 1b89_A Protein (clathrin heavy 99.7 3E-17 1E-21 151.4 10.7 215 3-249 26-240 (449)
17 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.4E-20 137.0 20.7 235 9-248 19-272 (327)
18 3ieg_A DNAJ homolog subfamily 99.7 1.7E-14 5.9E-19 131.1 27.1 189 55-248 129-338 (359)
19 3uq3_A Heat shock protein STI1 99.7 1.8E-15 6.1E-20 131.2 18.1 224 11-246 5-237 (258)
20 4eqf_A PEX5-related protein; a 99.7 2E-15 6.9E-20 138.5 18.4 227 9-241 97-352 (365)
21 3ieg_A DNAJ homolog subfamily 99.7 3E-14 1E-18 129.4 25.9 235 10-249 2-267 (359)
22 3cv0_A Peroxisome targeting si 99.7 6.6E-15 2.3E-19 132.3 20.4 231 9-244 53-314 (327)
23 2gw1_A Mitochondrial precursor 99.7 5.5E-15 1.9E-19 141.4 20.4 236 10-249 236-482 (514)
24 1fch_A Peroxisomal targeting s 99.6 6.2E-15 2.1E-19 135.0 18.8 231 9-244 96-358 (368)
25 2gw1_A Mitochondrial precursor 99.6 1.5E-14 5.2E-19 138.4 20.2 232 12-249 7-337 (514)
26 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.2E-14 1.8E-18 123.3 21.7 221 23-249 17-248 (275)
27 2ho1_A Type 4 fimbrial biogene 99.6 9.2E-14 3.2E-18 120.3 22.7 200 47-249 38-242 (252)
28 3fp2_A TPR repeat-containing p 99.6 5.2E-14 1.8E-18 135.6 23.1 234 12-249 244-495 (537)
29 3mkr_A Coatomer subunit epsilo 99.6 1.5E-14 5.2E-19 128.9 17.6 217 18-249 6-233 (291)
30 3u4t_A TPR repeat-containing p 99.6 4.7E-14 1.6E-18 123.6 19.6 232 13-249 5-254 (272)
31 2vq2_A PILW, putative fimbrial 99.6 1.8E-13 6.1E-18 115.9 22.3 205 10-249 7-215 (225)
32 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-13 6.3E-18 118.4 22.3 205 11-220 37-246 (252)
33 2vq2_A PILW, putative fimbrial 99.6 3E-13 1E-17 114.5 22.8 167 9-176 40-211 (225)
34 2q7f_A YRRB protein; TPR, prot 99.6 4.7E-14 1.6E-18 121.2 17.2 197 49-249 26-226 (243)
35 2pl2_A Hypothetical conserved 99.6 1.8E-13 6E-18 116.5 20.5 193 9-208 3-210 (217)
36 3fp2_A TPR repeat-containing p 99.6 2.3E-13 7.8E-18 131.0 23.7 232 12-249 26-377 (537)
37 2pl2_A Hypothetical conserved 99.6 7.2E-14 2.5E-18 118.9 17.8 197 43-244 2-213 (217)
38 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.4E-17 114.8 26.2 227 9-249 4-255 (273)
39 2q7f_A YRRB protein; TPR, prot 99.6 9.5E-14 3.2E-18 119.3 17.4 210 8-222 20-233 (243)
40 2h6f_A Protein farnesyltransfe 99.5 2.4E-12 8.1E-17 118.9 24.4 231 11-249 97-352 (382)
41 1b89_A Protein (clathrin heavy 99.5 1.2E-13 4.2E-18 127.4 12.9 207 8-240 58-267 (449)
42 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.2E-13 2.8E-17 115.6 16.6 221 10-239 42-269 (275)
43 2ond_A Cleavage stimulation fa 99.5 1.7E-11 5.7E-16 110.0 25.4 236 10-249 7-274 (308)
44 3vtx_A MAMA; tetratricopeptide 99.5 3.8E-12 1.3E-16 104.8 18.3 168 79-249 3-174 (184)
45 3nf1_A KLC 1, kinesin light ch 99.5 2.8E-13 9.6E-18 120.6 12.2 239 10-248 26-310 (311)
46 3uq3_A Heat shock protein STI1 99.4 2.7E-12 9.3E-17 110.9 16.4 191 46-249 5-206 (258)
47 3u4t_A TPR repeat-containing p 99.4 1.8E-11 6.1E-16 107.0 20.8 215 10-226 36-265 (272)
48 4abn_A Tetratricopeptide repea 99.4 8.2E-12 2.8E-16 119.0 18.6 209 27-241 84-317 (474)
49 3as5_A MAMA; tetratricopeptide 99.4 2.8E-11 9.6E-16 98.7 19.5 166 81-249 8-177 (186)
50 3vtx_A MAMA; tetratricopeptide 99.4 3.1E-11 1.1E-15 99.2 18.0 160 10-173 4-167 (184)
51 3sf4_A G-protein-signaling mod 99.3 1.7E-11 5.7E-16 113.3 15.3 236 8-245 6-296 (406)
52 1ouv_A Conserved hypothetical 99.3 6.2E-10 2.1E-14 97.5 23.5 192 45-247 5-217 (273)
53 2ond_A Cleavage stimulation fa 99.3 1.5E-10 5.2E-15 103.7 19.7 202 10-215 49-273 (308)
54 3ro2_A PINS homolog, G-protein 99.3 4E-11 1.4E-15 107.3 15.7 233 11-245 5-292 (338)
55 2h6f_A Protein farnesyltransfe 99.3 6.8E-11 2.3E-15 109.1 17.4 198 47-249 98-308 (382)
56 4a1s_A PINS, partner of inscut 99.3 2E-11 6.7E-16 113.5 13.8 232 12-245 49-332 (411)
57 4a1s_A PINS, partner of inscut 99.3 1.4E-11 4.8E-16 114.5 12.0 235 12-246 87-373 (411)
58 4abn_A Tetratricopeptide repea 99.3 6.7E-11 2.3E-15 112.7 16.5 183 62-249 84-291 (474)
59 3ro2_A PINS homolog, G-protein 99.3 2.4E-11 8.2E-16 108.8 11.9 237 11-247 43-334 (338)
60 4i17_A Hypothetical protein; T 99.3 2.5E-10 8.7E-15 97.2 17.7 195 44-249 5-213 (228)
61 3ulq_A Response regulator aspa 99.3 3.5E-10 1.2E-14 104.3 19.1 228 17-245 109-368 (383)
62 3as5_A MAMA; tetratricopeptide 99.2 4.5E-10 1.6E-14 91.4 17.5 163 11-176 8-173 (186)
63 1qqe_A Vesicular transport pro 99.2 3.1E-10 1.1E-14 100.8 17.1 207 26-247 32-271 (292)
64 4gyw_A UDP-N-acetylglucosamine 99.2 1E-10 3.6E-15 116.4 15.1 164 80-247 8-176 (723)
65 3sf4_A G-protein-signaling mod 99.2 8.3E-11 2.8E-15 108.6 12.6 235 11-245 47-336 (406)
66 2ooe_A Cleavage stimulation fa 99.2 1.1E-09 3.8E-14 105.6 20.3 233 12-248 231-495 (530)
67 2xm6_A Protein corresponding t 99.2 2.5E-08 8.4E-13 95.2 28.8 225 10-245 38-325 (490)
68 4g1t_A Interferon-induced prot 99.2 4.4E-09 1.5E-13 99.5 23.1 202 10-214 50-278 (472)
69 2fo7_A Synthetic consensus TPR 99.2 1.6E-09 5.4E-14 83.1 16.5 132 114-248 3-135 (136)
70 2xm6_A Protein corresponding t 99.2 3.4E-08 1.2E-12 94.2 29.3 203 28-244 24-251 (490)
71 1xi4_A Clathrin heavy chain; a 99.2 8.4E-09 2.9E-13 106.3 25.2 210 10-249 1104-1313(1630)
72 3edt_B KLC 2, kinesin light ch 99.2 2.1E-10 7.1E-15 100.2 11.8 224 22-245 12-281 (283)
73 4g1t_A Interferon-induced prot 99.1 3E-08 1E-12 93.7 26.9 235 10-248 93-366 (472)
74 3q15_A PSP28, response regulat 99.1 4.8E-09 1.6E-13 96.6 20.4 226 18-244 108-364 (378)
75 4gyw_A UDP-N-acetylglucosamine 99.1 1.6E-09 5.4E-14 107.9 17.9 162 10-175 8-173 (723)
76 1hz4_A MALT regulatory protein 99.1 3.1E-08 1.1E-12 90.7 25.5 231 15-245 18-282 (373)
77 3edt_B KLC 2, kinesin light ch 99.1 5.9E-10 2E-14 97.3 12.9 199 10-211 42-280 (283)
78 4i17_A Hypothetical protein; T 99.1 9.8E-09 3.4E-13 87.2 19.4 197 9-217 5-214 (228)
79 1qqe_A Vesicular transport pro 99.1 5.5E-09 1.9E-13 92.7 17.7 201 12-215 38-272 (292)
80 3mv2_B Coatomer subunit epsilo 99.1 3.8E-09 1.3E-13 93.4 15.6 177 65-249 85-286 (310)
81 3qky_A Outer membrane assembly 99.1 1.9E-08 6.6E-13 87.4 19.5 166 82-249 16-228 (261)
82 2fo7_A Synthetic consensus TPR 99.0 5.9E-09 2E-13 79.8 14.0 125 84-211 4-131 (136)
83 2ooe_A Cleavage stimulation fa 99.0 1.8E-08 6.2E-13 97.1 18.3 201 10-214 271-494 (530)
84 1hz4_A MALT regulatory protein 99.0 2E-08 6.9E-13 92.0 17.6 232 13-245 55-322 (373)
85 1xi4_A Clathrin heavy chain; a 99.0 1.4E-07 4.7E-12 97.4 24.6 213 9-247 1132-1347(1630)
86 3nf1_A KLC 1, kinesin light ch 99.0 5.7E-09 2E-13 92.4 12.7 164 82-245 28-224 (311)
87 2pzi_A Probable serine/threoni 98.9 3.3E-08 1.1E-12 98.3 18.5 170 57-231 402-583 (681)
88 3urz_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 82.8 16.1 177 50-248 8-189 (208)
89 3qou_A Protein YBBN; thioredox 98.9 1.2E-07 4E-12 83.9 19.3 158 49-208 120-280 (287)
90 3dra_A Protein farnesyltransfe 98.9 9.1E-07 3.1E-11 78.6 24.6 223 21-249 42-292 (306)
91 3qky_A Outer membrane assembly 98.9 7.8E-08 2.7E-12 83.5 17.5 99 8-108 12-124 (261)
92 3mv2_B Coatomer subunit epsilo 98.9 2.4E-08 8.2E-13 88.3 14.1 182 30-216 85-286 (310)
93 2vsy_A XCC0866; transferase, g 98.9 3.3E-08 1.1E-12 96.1 16.6 153 59-215 2-160 (568)
94 3urz_A Uncharacterized protein 98.9 8.9E-08 3E-12 80.3 17.0 186 13-223 6-197 (208)
95 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-07 4.4E-12 79.1 17.9 133 83-216 8-154 (213)
96 4e6h_A MRNA 3'-END-processing 98.9 2.4E-07 8.2E-12 91.3 22.0 233 12-249 303-574 (679)
97 2r5s_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 80.0 13.8 156 84-244 9-172 (176)
98 2ifu_A Gamma-SNAP; membrane fu 98.9 4.8E-08 1.6E-12 87.3 15.3 211 24-237 4-253 (307)
99 2yhc_A BAMD, UPF0169 lipoprote 98.9 7.6E-08 2.6E-12 81.8 15.6 183 47-249 5-217 (225)
100 4ga2_A E3 SUMO-protein ligase 98.9 2E-08 7E-13 79.7 11.1 140 87-230 3-148 (150)
101 3ulq_A Response regulator aspa 98.8 7.7E-08 2.6E-12 88.5 15.9 197 11-211 143-367 (383)
102 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.7E-08 2.6E-12 80.5 14.6 131 112-248 6-153 (213)
103 2pzi_A Probable serine/threoni 98.8 6.9E-08 2.4E-12 96.0 15.9 181 22-208 402-601 (681)
104 3qou_A Protein YBBN; thioredox 98.8 4.7E-08 1.6E-12 86.5 13.1 163 78-244 114-283 (287)
105 2ifu_A Gamma-SNAP; membrane fu 98.8 7E-08 2.4E-12 86.2 13.2 189 59-249 4-227 (307)
106 2r5s_A Uncharacterized protein 98.8 1.9E-07 6.3E-12 76.0 14.2 156 49-209 9-170 (176)
107 3e4b_A ALGK; tetratricopeptide 98.8 2.3E-06 7.8E-11 80.7 23.4 225 11-246 141-388 (452)
108 3q15_A PSP28, response regulat 98.7 2.8E-07 9.6E-12 84.7 16.5 196 11-210 141-363 (378)
109 3rjv_A Putative SEL1 repeat pr 98.7 3.7E-07 1.3E-11 76.8 15.6 157 81-244 18-196 (212)
110 2qfc_A PLCR protein; TPR, HTH, 98.7 4.9E-07 1.7E-11 79.9 16.9 164 81-244 75-265 (293)
111 2vsy_A XCC0866; transferase, g 98.7 1.7E-07 5.9E-12 91.1 14.8 149 24-176 2-157 (568)
112 2yhc_A BAMD, UPF0169 lipoprote 98.7 6.3E-07 2.2E-11 76.0 16.5 186 10-214 3-215 (225)
113 4ga2_A E3 SUMO-protein ligase 98.7 1.1E-08 3.7E-13 81.3 4.8 126 120-249 5-133 (150)
114 3u3w_A Transcriptional activat 98.7 3.4E-06 1.2E-10 74.5 20.4 202 34-244 34-265 (293)
115 4gco_A Protein STI-1; structur 98.7 3.9E-07 1.3E-11 69.9 12.3 99 149-249 15-114 (126)
116 3gyz_A Chaperone protein IPGC; 98.6 6E-07 2E-11 71.2 12.9 100 147-248 36-136 (151)
117 3rjv_A Putative SEL1 repeat pr 98.6 8.1E-06 2.8E-10 68.5 20.5 125 10-141 17-158 (212)
118 1a17_A Serine/threonine protei 98.6 1.4E-06 4.7E-11 69.3 15.0 130 112-244 13-145 (166)
119 1na0_A Designed protein CTPR3; 98.6 1.6E-06 5.4E-11 65.0 14.5 112 112-226 9-121 (125)
120 3q7a_A Farnesyltransferase alp 98.6 2.8E-05 9.6E-10 69.9 24.5 228 14-247 57-334 (349)
121 3e4b_A ALGK; tetratricopeptide 98.6 1.4E-06 4.7E-11 82.3 16.8 139 97-243 161-314 (452)
122 2e2e_A Formate-dependent nitri 98.6 4.7E-07 1.6E-11 73.4 11.9 124 123-249 21-148 (177)
123 2vgx_A Chaperone SYCD; alterna 98.6 2.2E-07 7.4E-12 73.5 9.4 101 147-249 21-122 (148)
124 3gw4_A Uncharacterized protein 98.6 3.3E-06 1.1E-10 69.5 17.0 96 113-208 67-172 (203)
125 3gyz_A Chaperone protein IPGC; 98.6 1E-06 3.5E-11 69.9 12.7 104 111-217 35-138 (151)
126 4gco_A Protein STI-1; structur 98.6 1.8E-06 6.1E-11 66.1 13.5 106 113-221 14-120 (126)
127 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.9E-11 71.8 13.8 153 92-244 3-175 (203)
128 3u3w_A Transcriptional activat 98.5 4.8E-06 1.7E-10 73.5 17.7 158 52-209 81-263 (293)
129 2vyi_A SGTA protein; chaperone 98.5 2E-06 6.9E-11 65.0 12.9 117 112-231 12-129 (131)
130 2xcb_A PCRH, regulatory protei 98.5 2.1E-06 7.1E-11 67.0 12.7 98 149-248 20-118 (142)
131 1na0_A Designed protein CTPR3; 98.5 2.6E-06 9E-11 63.8 12.9 95 11-107 9-103 (125)
132 2lni_A Stress-induced-phosphop 98.5 2.6E-06 8.8E-11 64.8 12.9 117 111-230 15-132 (133)
133 2qfc_A PLCR protein; TPR, HTH, 98.5 5.6E-06 1.9E-10 73.1 16.7 166 46-211 75-265 (293)
134 4f3v_A ESX-1 secretion system 98.5 2.9E-06 1E-10 73.9 14.2 187 23-215 18-240 (282)
135 1p5q_A FKBP52, FK506-binding p 98.5 2.4E-06 8.2E-11 77.3 14.3 147 96-244 128-293 (336)
136 1a17_A Serine/threonine protei 98.5 3.8E-06 1.3E-10 66.7 13.7 123 83-208 15-142 (166)
137 2c2l_A CHIP, carboxy terminus 98.5 9.3E-07 3.2E-11 77.8 10.9 189 46-244 4-198 (281)
138 4f3v_A ESX-1 secretion system 98.5 6.1E-07 2.1E-11 78.3 9.3 185 58-247 18-239 (282)
139 3dss_A Geranylgeranyl transfer 98.4 3.3E-05 1.1E-09 69.1 20.1 232 11-249 26-308 (331)
140 1elw_A TPR1-domain of HOP; HOP 98.4 5E-06 1.7E-10 61.5 12.1 99 113-214 5-103 (118)
141 3sz7_A HSC70 cochaperone (SGT) 98.4 2.7E-06 9.2E-11 68.0 10.9 101 147-249 11-112 (164)
142 2lni_A Stress-induced-phosphop 98.4 7.1E-06 2.4E-10 62.3 12.7 115 9-125 14-131 (133)
143 1elw_A TPR1-domain of HOP; HOP 98.4 2.1E-05 7.3E-10 58.0 15.0 100 148-249 5-105 (118)
144 2kck_A TPR repeat; tetratricop 98.4 2.7E-06 9.1E-11 62.5 9.8 98 149-248 8-109 (112)
145 2fbn_A 70 kDa peptidylprolyl i 98.4 1.1E-06 3.9E-11 72.7 8.5 156 87-244 10-185 (198)
146 2e2e_A Formate-dependent nitri 98.4 3.8E-06 1.3E-10 68.0 11.4 115 59-175 23-143 (177)
147 2vyi_A SGTA protein; chaperone 98.3 8.7E-06 3E-10 61.4 12.6 116 81-199 12-130 (131)
148 3upv_A Heat shock protein STI1 98.3 2.9E-06 9.9E-11 64.5 9.8 95 150-246 7-102 (126)
149 1elr_A TPR2A-domain of HOP; HO 98.3 5.1E-06 1.8E-10 62.8 11.2 112 113-225 5-121 (131)
150 1hxi_A PEX5, peroxisome target 98.3 3.4E-06 1.1E-10 64.0 10.0 94 153-248 23-117 (121)
151 4gcn_A Protein STI-1; structur 98.3 1E-05 3.6E-10 61.8 12.9 107 113-220 9-120 (127)
152 3q49_B STIP1 homology and U bo 98.3 4.6E-06 1.6E-10 64.1 10.4 102 145-248 7-109 (137)
153 2vgx_A Chaperone SYCD; alterna 98.3 4.9E-06 1.7E-10 65.5 10.5 93 82-175 22-117 (148)
154 3upv_A Heat shock protein STI1 98.3 1.9E-05 6.5E-10 59.8 13.3 98 113-213 5-102 (126)
155 2dba_A Smooth muscle cell asso 98.3 1E-05 3.4E-10 62.8 11.8 100 111-214 27-130 (148)
156 1p5q_A FKBP52, FK506-binding p 98.3 6.3E-06 2.2E-10 74.4 12.1 92 82-174 197-292 (336)
157 4e6h_A MRNA 3'-END-processing 98.3 2.9E-05 9.9E-10 76.6 17.3 210 10-223 342-581 (679)
158 4gcn_A Protein STI-1; structur 98.3 5.8E-06 2E-10 63.2 9.6 99 148-248 9-115 (127)
159 2kck_A TPR repeat; tetratricop 98.2 1.7E-05 5.8E-10 58.0 11.3 101 111-214 5-108 (112)
160 3q49_B STIP1 homology and U bo 98.2 1.7E-05 5.9E-10 60.8 11.6 98 111-211 8-105 (137)
161 2dba_A Smooth muscle cell asso 98.2 3.8E-05 1.3E-09 59.4 13.8 93 81-174 28-126 (148)
162 2if4_A ATFKBP42; FKBP-like, al 98.2 7.3E-06 2.5E-10 74.1 10.7 134 112-249 179-332 (338)
163 1elr_A TPR2A-domain of HOP; HO 98.2 1E-05 3.4E-10 61.1 9.9 99 147-247 4-110 (131)
164 2xev_A YBGF; tetratricopeptide 98.2 1.7E-05 6E-10 60.0 11.2 92 156-249 11-109 (129)
165 2xcb_A PCRH, regulatory protei 98.2 1.5E-05 5.1E-10 62.0 10.4 100 112-214 18-117 (142)
166 4b4t_Q 26S proteasome regulato 98.2 5.4E-05 1.8E-09 70.3 15.9 193 18-210 11-243 (434)
167 3ro3_A PINS homolog, G-protein 98.2 2.6E-05 9.1E-10 61.0 11.9 131 114-244 11-157 (164)
168 3sz7_A HSC70 cochaperone (SGT) 98.1 4.7E-05 1.6E-09 60.6 13.2 96 113-211 12-107 (164)
169 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.6E-09 68.3 17.1 191 54-244 12-244 (434)
170 2c2l_A CHIP, carboxy terminus 98.1 3.3E-05 1.1E-09 67.7 12.6 97 149-247 6-103 (281)
171 1hxi_A PEX5, peroxisome target 98.1 4E-05 1.4E-09 57.9 11.2 98 114-215 19-117 (121)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.8E-05 1.7E-09 71.7 14.2 132 111-244 267-414 (457)
173 3rkv_A Putative peptidylprolyl 98.1 1.9E-05 6.5E-10 62.8 9.7 66 183-248 63-129 (162)
174 1wao_1 Serine/threonine protei 98.1 5E-06 1.7E-10 78.9 6.7 116 122-240 16-134 (477)
175 1wao_1 Serine/threonine protei 98.0 4.1E-05 1.4E-09 72.6 12.9 152 90-244 15-196 (477)
176 2hr2_A Hypothetical protein; a 98.0 2E-05 6.9E-10 62.3 8.6 93 154-249 18-135 (159)
177 2fbn_A 70 kDa peptidylprolyl i 98.0 5.4E-05 1.9E-09 62.3 11.3 126 47-173 39-183 (198)
178 3dss_A Geranylgeranyl transfer 98.0 0.00055 1.9E-08 61.2 18.4 188 58-249 41-271 (331)
179 3dra_A Protein farnesyltransfe 98.0 0.00058 2E-08 60.5 18.3 210 10-223 66-300 (306)
180 2xev_A YBGF; tetratricopeptide 98.0 9.8E-05 3.3E-09 55.7 11.6 96 117-215 7-108 (129)
181 3k9i_A BH0479 protein; putativ 98.0 4.4E-06 1.5E-10 62.7 3.7 85 125-211 3-89 (117)
182 3ro3_A PINS homolog, G-protein 98.0 2.8E-05 9.4E-10 60.9 8.3 137 12-175 10-157 (164)
183 3rkv_A Putative peptidylprolyl 97.9 0.00013 4.5E-09 57.8 11.3 102 113-216 12-130 (162)
184 2uy1_A Cleavage stimulation fa 97.9 0.0022 7.4E-08 61.0 21.1 239 28-294 196-455 (493)
185 1ihg_A Cyclophilin 40; ppiase 97.8 9.7E-05 3.3E-09 67.6 11.1 122 113-237 224-362 (370)
186 3k9i_A BH0479 protein; putativ 97.8 2.3E-05 7.7E-10 58.7 4.9 81 95-176 4-90 (117)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00016 5.6E-09 68.0 11.7 92 12-106 269-376 (457)
188 1ihg_A Cyclophilin 40; ppiase 97.7 0.00024 8.3E-09 64.9 11.8 102 148-249 224-340 (370)
189 3n71_A Histone lysine methyltr 97.7 0.00016 5.4E-09 68.6 10.3 124 121-244 318-463 (490)
190 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00015 5.3E-09 65.3 9.5 142 12-174 180-326 (338)
191 3n71_A Histone lysine methyltr 97.6 0.00027 9.1E-09 67.0 10.5 95 82-176 352-464 (490)
192 2l6j_A TPR repeat-containing p 97.6 5.7E-05 2E-09 55.3 4.8 59 114-173 6-64 (111)
193 1dce_A Protein (RAB geranylger 97.6 0.0039 1.3E-07 60.3 18.5 150 97-249 45-225 (567)
194 2l6j_A TPR repeat-containing p 97.5 0.00013 4.5E-09 53.3 5.8 97 9-108 2-105 (111)
195 1zu2_A Mitochondrial import re 97.5 9.5E-05 3.2E-09 58.3 4.8 89 159-249 14-124 (158)
196 2hr2_A Hypothetical protein; a 97.5 0.001 3.5E-08 52.5 10.4 102 12-140 12-130 (159)
197 3q7a_A Farnesyltransferase alp 97.5 0.0082 2.8E-07 53.9 17.4 170 58-231 66-257 (349)
198 1klx_A Cysteine rich protein B 97.4 0.00094 3.2E-08 51.5 9.4 110 25-142 9-127 (138)
199 1dce_A Protein (RAB geranylger 97.4 0.0047 1.6E-07 59.7 15.7 168 63-234 46-244 (567)
200 2kat_A Uncharacterized protein 97.4 0.0005 1.7E-08 50.9 7.0 64 182-245 18-82 (115)
201 2kat_A Uncharacterized protein 97.3 0.0015 5.1E-08 48.2 9.2 79 130-211 3-81 (115)
202 1na3_A Designed protein CTPR2; 97.3 0.0026 8.8E-08 44.2 9.9 83 10-94 8-90 (91)
203 1na3_A Designed protein CTPR2; 97.2 0.0057 2E-07 42.4 11.3 60 114-174 11-70 (91)
204 3ma5_A Tetratricopeptide repea 97.2 0.0022 7.4E-08 46.2 8.8 62 112-174 7-68 (100)
205 3ma5_A Tetratricopeptide repea 97.2 0.00056 1.9E-08 49.4 5.3 64 182-245 6-70 (100)
206 3qwp_A SET and MYND domain-con 97.2 0.0059 2E-07 56.8 13.5 93 152-244 292-399 (429)
207 1klx_A Cysteine rich protein B 97.1 0.0099 3.4E-07 45.6 12.1 109 60-176 9-126 (138)
208 2uy1_A Cleavage stimulation fa 97.1 0.034 1.2E-06 52.6 17.9 183 11-210 213-411 (493)
209 3ly7_A Transcriptional activat 97.0 0.022 7.5E-07 51.3 15.0 138 110-249 192-343 (372)
210 1zu2_A Mitochondrial import re 97.0 0.0013 4.6E-08 51.7 6.0 97 124-224 14-132 (158)
211 3qww_A SET and MYND domain-con 97.0 0.004 1.4E-07 57.9 10.2 86 159-244 310-410 (433)
212 2kc7_A BFR218_protein; tetratr 96.8 0.0012 4E-08 47.2 4.4 53 121-174 9-62 (99)
213 3mkq_A Coatomer beta'-subunit; 96.7 0.12 4.2E-06 51.7 19.7 154 19-208 607-761 (814)
214 2kc7_A BFR218_protein; tetratr 96.7 0.0033 1.1E-07 44.7 5.9 59 154-214 7-66 (99)
215 3bee_A Putative YFRE protein; 96.6 0.009 3.1E-07 42.5 7.7 69 180-248 3-75 (93)
216 3qwp_A SET and MYND domain-con 96.6 0.012 4E-07 54.8 10.4 93 119-211 294-399 (429)
217 3ly7_A Transcriptional activat 96.4 0.11 3.9E-06 46.6 15.3 75 144-221 274-348 (372)
218 1pc2_A Mitochondria fission pr 96.3 0.045 1.5E-06 42.5 10.5 85 163-249 14-104 (152)
219 3qww_A SET and MYND domain-con 96.3 0.0095 3.3E-07 55.4 7.9 64 112-175 340-410 (433)
220 2v5f_A Prolyl 4-hydroxylase su 95.9 0.021 7E-07 41.4 6.4 66 184-249 6-79 (104)
221 3mkq_A Coatomer beta'-subunit; 95.7 0.13 4.3E-06 51.5 13.6 154 57-244 610-764 (814)
222 1pc2_A Mitochondria fission pr 95.3 0.16 5.6E-06 39.4 9.8 85 129-216 15-104 (152)
223 2v5f_A Prolyl 4-hydroxylase su 95.2 0.086 2.9E-06 38.0 7.6 59 115-173 8-72 (104)
224 1nzn_A CGI-135 protein, fissio 94.9 0.29 1E-05 36.5 9.9 87 161-249 15-107 (126)
225 3bee_A Putative YFRE protein; 94.5 0.22 7.7E-06 35.0 8.2 64 111-175 5-71 (93)
226 3u64_A Protein TP_0956; tetrat 93.8 0.14 4.8E-06 44.3 6.9 65 183-247 199-271 (301)
227 3mkq_B Coatomer subunit alpha; 93.7 1.5 5.1E-05 34.8 12.3 126 92-242 16-141 (177)
228 3mkq_B Coatomer subunit alpha; 93.7 2.1 7.2E-05 34.0 15.8 126 56-208 15-140 (177)
229 4h7y_A Dual specificity protei 92.2 2.2 7.5E-05 32.9 10.6 102 110-214 11-125 (161)
230 1wy6_A Hypothetical protein ST 91.8 3.3 0.00011 31.4 15.0 119 124-245 19-154 (172)
231 1wy6_A Hypothetical protein ST 91.8 3.3 0.00011 31.3 15.2 139 22-179 18-156 (172)
232 1nzn_A CGI-135 protein, fissio 91.3 0.54 1.9E-05 35.1 6.4 85 128-215 17-106 (126)
233 2ff4_A Probable regulatory pro 91.2 1.4 4.6E-05 40.1 10.3 67 118-185 177-247 (388)
234 3u64_A Protein TP_0956; tetrat 91.0 1.1 3.9E-05 38.7 8.9 78 28-107 180-266 (301)
235 2uwj_G Type III export protein 90.9 3.1 0.00011 29.4 9.5 89 59-152 19-107 (115)
236 2p58_C Putative type III secre 90.7 3.3 0.00011 29.3 9.7 89 59-152 20-108 (116)
237 4gns_B Protein CSD3, chitin bi 89.4 3.5 0.00012 40.8 12.1 47 195-241 349-396 (754)
238 4h7y_A Dual specificity protei 89.3 2 6.9E-05 33.1 8.0 102 146-249 12-127 (161)
239 1v54_E Cytochrome C oxidase po 88.7 2.1 7E-05 30.4 7.1 61 129-191 27-87 (109)
240 1v54_E Cytochrome C oxidase po 87.9 1.8 6.1E-05 30.7 6.4 63 26-89 25-87 (109)
241 4b4t_P 26S proteasome regulato 87.5 17 0.00059 33.4 19.5 186 25-210 30-245 (445)
242 2ff4_A Probable regulatory pro 87.5 3.2 0.00011 37.7 9.8 57 50-107 175-231 (388)
243 4b4t_P 26S proteasome regulato 86.8 19 0.00065 33.1 16.2 185 60-244 30-246 (445)
244 4fhn_B Nucleoporin NUP120; pro 86.6 16 0.00053 38.3 15.7 118 80-200 841-988 (1139)
245 3o48_A Mitochondria fission 1 86.1 5.5 0.00019 29.8 8.6 69 181-249 38-111 (134)
246 3ffl_A Anaphase-promoting comp 83.2 11 0.00038 29.4 9.5 122 75-211 12-149 (167)
247 2y69_E Cytochrome C oxidase su 82.7 7.9 0.00027 29.1 8.0 61 130-192 71-131 (152)
248 4gns_B Protein CSD3, chitin bi 80.3 41 0.0014 33.3 14.7 123 49-173 251-397 (754)
249 4fhn_B Nucleoporin NUP120; pro 80.0 23 0.00079 37.0 13.7 147 86-235 817-990 (1139)
250 1y8m_A FIS1; mitochondria, unk 79.2 19 0.00063 27.3 12.4 70 180-249 36-110 (144)
251 2y69_E Cytochrome C oxidase su 78.1 11 0.00038 28.3 7.5 44 65-108 72-115 (152)
252 3o48_A Mitochondria fission 1 78.0 18 0.00061 27.0 8.8 71 143-216 36-111 (134)
253 3ffl_A Anaphase-promoting comp 77.5 23 0.0008 27.6 9.8 67 7-73 16-90 (167)
254 2nsz_A Programmed cell death p 71.7 12 0.00041 27.8 6.6 65 83-147 9-78 (129)
255 2wpv_A GET4, UPF0363 protein Y 71.4 51 0.0017 28.6 18.5 79 57-135 64-157 (312)
256 1k1a_A B-cell lymphoma 3-encod 71.1 16 0.00056 29.6 8.2 85 18-107 13-102 (241)
257 3ltj_A Alpharep-4; protein eng 71.1 36 0.0012 26.7 17.7 141 79-230 57-197 (201)
258 1zbp_A Hypothetical protein VP 71.1 9.9 0.00034 32.3 6.5 124 120-249 5-133 (273)
259 1y8m_A FIS1; mitochondria, unk 70.6 32 0.0011 26.0 10.3 70 144-216 36-110 (144)
260 3ltm_A Alpha-REP4; protein eng 70.0 39 0.0013 26.8 17.2 173 44-231 31-203 (211)
261 4b4t_R RPN7, 26S proteasome re 69.4 61 0.0021 29.5 12.3 97 114-210 133-235 (429)
262 3lpz_A GET4 (YOR164C homolog); 68.7 61 0.0021 28.5 18.5 112 83-206 37-159 (336)
263 3lvg_A Clathrin heavy chain 1; 68.6 0.095 3.3E-06 48.7 -6.7 210 9-236 81-324 (624)
264 3kae_A CDC27, possible protein 66.2 46 0.0016 26.2 15.6 151 93-248 45-240 (242)
265 2ion_A PDCD4, programmed cell 64.7 11 0.00039 28.9 5.3 65 83-147 11-80 (152)
266 3lpz_A GET4 (YOR164C homolog); 62.8 80 0.0027 27.7 22.9 130 14-162 38-182 (336)
267 3txn_A 26S proteasome regulato 62.5 89 0.003 28.2 17.3 56 118-173 105-165 (394)
268 1wdy_A 2-5A-dependent ribonucl 62.3 31 0.0011 28.5 8.3 206 15-240 6-240 (285)
269 2d2s_A Exocyst complex compone 61.7 35 0.0012 28.3 8.1 24 16-39 23-46 (235)
270 4ady_A RPN2, 26S proteasome re 60.0 1.5E+02 0.0053 30.1 14.8 230 15-251 415-663 (963)
271 4b4t_R RPN7, 26S proteasome re 59.7 33 0.0011 31.3 8.5 115 62-178 110-239 (429)
272 3ltj_A Alpharep-4; protein eng 59.6 61 0.0021 25.3 18.1 154 79-244 26-179 (201)
273 3lvg_A Clathrin heavy chain 1; 58.5 0.014 4.8E-07 54.1 -14.0 114 83-208 56-169 (624)
274 1qsa_A Protein (soluble lytic 58.0 1.4E+02 0.0046 28.8 15.9 113 127-244 229-347 (618)
275 3aji_A 26S proteasome non-ATPa 56.0 35 0.0012 27.3 7.4 85 17-106 9-95 (231)
276 2nsz_A Programmed cell death p 55.6 34 0.0012 25.3 6.4 71 13-84 9-81 (129)
277 3esl_A Checkpoint serine/threo 55.5 52 0.0018 26.5 7.8 58 61-118 94-152 (202)
278 3bu8_A Telomeric repeat-bindin 55.2 62 0.0021 26.3 8.0 49 163-211 88-142 (235)
279 1k1a_A B-cell lymphoma 3-encod 54.8 22 0.00077 28.7 6.0 180 53-240 13-204 (241)
280 3jxi_A Vanilloid receptor-rela 53.9 16 0.00053 30.3 4.9 92 17-108 8-117 (260)
281 2d2s_A Exocyst complex compone 52.6 55 0.0019 27.1 7.8 86 119-208 25-116 (235)
282 3ltm_A Alpha-REP4; protein eng 51.2 88 0.003 24.6 17.8 155 78-244 30-184 (211)
283 1zbp_A Hypothetical protein VP 50.5 1.2E+02 0.0039 25.8 16.1 112 89-211 5-128 (273)
284 2ion_A PDCD4, programmed cell 50.5 42 0.0014 25.6 6.3 70 13-83 11-82 (152)
285 3eiq_C Programmed cell death p 50.4 1.4E+02 0.0046 26.5 11.2 58 149-208 219-278 (358)
286 4ady_A RPN2, 26S proteasome re 49.7 1.9E+02 0.0065 29.4 12.4 191 28-228 471-673 (963)
287 2p1h_A APAF-1, apoptotic prote 49.7 59 0.002 22.2 6.6 61 67-131 26-86 (94)
288 1ug3_A EIF4GI, eukaryotic prot 47.6 1.4E+02 0.0047 26.1 10.2 61 84-144 14-78 (339)
289 3eu9_A Huntingtin-interacting 46.7 22 0.00076 28.6 4.6 203 21-242 16-233 (240)
290 4a1g_A Mitotic checkpoint seri 45.8 94 0.0032 23.7 7.6 48 100-147 84-136 (152)
291 1oai_A Nuclear RNA export fact 43.8 16 0.00055 22.9 2.4 24 24-47 33-57 (59)
292 3ygs_P Procaspase 9; apoptosis 41.5 28 0.00096 24.2 3.7 37 95-131 51-87 (97)
293 2wpv_A GET4, UPF0363 protein Y 41.4 1.7E+02 0.006 25.2 20.5 113 83-206 35-157 (312)
294 3eiq_C Programmed cell death p 39.8 56 0.0019 29.0 6.3 26 13-38 56-81 (358)
295 2fe3_A Peroxide operon regulat 39.2 98 0.0034 23.1 6.9 63 136-200 11-73 (145)
296 2uwj_G Type III export protein 39.0 1E+02 0.0035 21.8 8.3 42 194-239 50-91 (115)
297 2zu6_B Programmed cell death p 38.7 55 0.0019 28.4 5.9 23 15-37 7-29 (307)
298 3hra_A Ankyrin repeat family p 38.1 61 0.0021 25.1 5.9 83 19-106 10-94 (201)
299 3twr_A Tankyrase-2; ankyrin re 38.0 74 0.0025 23.7 6.2 18 18-35 12-29 (165)
300 4b4t_S RPN3, 26S proteasome re 37.9 1.4E+02 0.0047 28.1 8.7 27 12-38 232-258 (523)
301 1wdy_A 2-5A-dependent ribonucl 35.8 61 0.0021 26.7 5.8 207 17-241 42-275 (285)
302 3kea_A K1L; tropism, ANK repea 35.6 63 0.0022 27.1 5.9 14 92-105 103-116 (285)
303 3txn_A 26S proteasome regulato 35.4 2.5E+02 0.0084 25.2 20.8 227 12-243 20-282 (394)
304 2r9g_A AAA ATPase, central reg 34.8 1.8E+02 0.006 23.4 9.0 44 117-161 16-62 (204)
305 3b7b_A Euchromatic histone-lys 34.6 48 0.0016 26.6 4.8 206 18-243 15-234 (237)
306 2dzn_A Probable 26S proteasome 33.8 1.1E+02 0.0036 24.2 6.8 85 18-107 6-95 (228)
307 2zu6_B Programmed cell death p 33.3 2.3E+02 0.008 24.3 12.1 24 116-139 170-193 (307)
308 1mzb_A Ferric uptake regulatio 32.5 1.2E+02 0.0039 22.4 6.2 60 36-96 8-68 (136)
309 3bqo_A Telomeric repeat-bindin 31.8 1.3E+02 0.0045 24.1 6.4 50 199-249 94-150 (211)
310 2fu4_A Ferric uptake regulatio 31.7 1.1E+02 0.0037 20.0 6.3 61 35-96 6-67 (83)
311 4a1g_A Mitotic checkpoint seri 31.4 1.2E+02 0.004 23.2 6.0 60 63-122 82-142 (152)
312 2fe3_A Peroxide operon regulat 31.2 1.2E+02 0.004 22.7 6.1 61 35-96 11-71 (145)
313 2xig_A Ferric uptake regulatio 30.8 1.7E+02 0.0058 21.9 7.3 63 136-200 16-78 (150)
314 3eu9_A Huntingtin-interacting 30.6 82 0.0028 25.0 5.7 174 17-208 45-232 (240)
315 3bge_A Predicted ATPase; struc 30.2 1.8E+02 0.0062 23.3 7.0 92 118-210 10-109 (201)
316 2wvi_A Mitotic checkpoint seri 29.9 1.3E+02 0.0044 23.3 6.1 59 64-122 78-137 (164)
317 2xig_A Ferric uptake regulatio 29.6 1.3E+02 0.0044 22.6 6.1 61 35-96 16-76 (150)
318 2w57_A Ferric uptake regulatio 29.6 1.4E+02 0.0046 22.5 6.3 62 35-97 6-68 (150)
319 3hra_A Ankyrin repeat family p 28.9 72 0.0025 24.6 4.9 121 18-146 43-172 (201)
320 3rjo_A Endoplasmic reticulum a 28.8 3.2E+02 0.011 24.5 12.0 150 49-208 200-369 (419)
321 3esl_A Checkpoint serine/threo 28.8 2.3E+02 0.0077 22.8 10.9 56 125-181 92-148 (202)
322 2p58_C Putative type III secre 28.5 1.6E+02 0.0054 20.9 8.9 72 128-208 23-94 (116)
323 2rfa_A Transient receptor pote 28.3 1.7E+02 0.0059 23.0 7.2 180 17-208 6-219 (232)
324 3v30_A DNA-binding protein rfx 27.8 1.6E+02 0.0055 21.9 6.7 86 18-108 6-93 (172)
325 2o03_A Probable zinc uptake re 27.7 90 0.0031 22.8 4.8 31 18-48 17-47 (131)
326 2b7e_A PRE-mRNA processing pro 26.9 47 0.0016 20.8 2.5 29 28-56 3-31 (59)
327 3t8k_A Uncharacterized protein 26.7 1.9E+02 0.0065 22.3 7.0 59 20-82 12-71 (186)
328 2l0z_A Glycoprotein G2; zinc-b 26.6 24 0.00083 20.0 1.0 14 355-368 19-32 (42)
329 1bd8_A P19INK4D CDK4/6 inhibit 26.5 60 0.002 23.9 3.8 82 17-105 5-89 (156)
330 1qsa_A Protein (soluble lytic 26.4 4.3E+02 0.015 25.3 24.6 83 124-210 264-346 (618)
331 4ets_A Ferric uptake regulatio 26.0 1.4E+02 0.0047 22.9 5.8 71 129-200 14-86 (162)
332 3ygs_P Procaspase 9; apoptosis 26.0 64 0.0022 22.4 3.5 39 197-237 51-89 (97)
333 2yru_A Steroid receptor RNA ac 25.8 69 0.0024 23.3 3.7 43 33-75 48-90 (118)
334 2yru_A Steroid receptor RNA ac 25.5 92 0.0032 22.6 4.3 42 134-175 48-89 (118)
335 2o03_A Probable zinc uptake re 25.3 1.2E+02 0.0043 22.0 5.2 47 153-200 16-62 (131)
336 1ug3_A EIF4GI, eukaryotic prot 25.3 3.1E+02 0.011 23.8 8.7 65 14-79 14-79 (339)
337 2qfz_A TBC1 domain family memb 25.2 2.6E+02 0.0089 24.3 8.2 43 67-109 230-272 (345)
338 3kea_A K1L; tropism, ANK repea 25.1 1.4E+02 0.005 24.8 6.4 47 57-107 39-85 (285)
339 2rfa_A Transient receptor pote 24.1 1.5E+02 0.0051 23.4 6.1 177 54-244 8-222 (232)
340 4ets_A Ferric uptake regulatio 23.0 1.7E+02 0.0057 22.4 5.7 69 27-96 13-84 (162)
341 3mwm_A ZUR, putative metal upt 22.7 1.1E+02 0.0037 22.7 4.4 48 152-200 18-65 (139)
342 2qx5_A Nucleoporin NIC96; mRNA 22.4 5.4E+02 0.018 24.9 13.7 208 18-243 301-565 (661)
343 4aez_C MAD3, mitotic spindle c 22.3 1.4E+02 0.0046 24.5 5.2 60 63-122 131-191 (223)
344 2hgo_A CASSIICOLIN; toxin, dis 22.3 35 0.0012 16.8 1.0 16 352-367 6-23 (27)
345 2rg8_A Programmed cell death p 22.2 1E+02 0.0036 23.7 4.4 27 13-39 12-38 (165)
346 4hbd_A KN motif and ankyrin re 22.2 1.8E+02 0.0062 24.1 6.4 106 93-208 159-272 (276)
347 3eyy_A Putative iron uptake re 22.1 1.2E+02 0.004 22.7 4.6 62 32-95 5-66 (145)
348 2ijq_A Hypothetical protein; s 22.1 2E+02 0.007 22.1 5.9 52 23-74 44-103 (161)
349 2r9g_A AAA ATPase, central reg 22.1 3.1E+02 0.01 22.0 9.5 63 14-77 14-84 (204)
350 3ljn_A Hypothetical protein; a 22.0 89 0.003 27.1 4.5 216 9-241 16-266 (364)
351 3no6_A Transcriptional activat 21.9 2.8E+02 0.0095 22.9 7.3 27 7-33 125-152 (248)
352 2etb_A Transient receptor pote 21.2 1E+02 0.0035 25.0 4.5 92 17-108 5-114 (256)
353 3mwm_A ZUR, putative metal upt 21.1 82 0.0028 23.4 3.5 47 51-97 18-64 (139)
354 4aez_C MAD3, mitotic spindle c 21.0 1.2E+02 0.0041 24.8 4.6 50 98-147 131-185 (223)
355 2ijq_A Hypothetical protein; s 20.9 2.9E+02 0.0099 21.2 8.2 53 124-176 44-104 (161)
356 2xdt_A Endoplasmic reticulum a 20.8 6.5E+02 0.022 25.3 12.9 86 49-140 683-778 (897)
357 3ibx_A TENA, HP1287, putative 20.8 2.3E+02 0.0079 22.8 6.5 26 7-32 109-134 (221)
358 1mzb_A Ferric uptake regulatio 20.3 1.5E+02 0.0051 21.8 4.8 62 137-200 8-70 (136)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-33 Score=270.97 Aligned_cols=185 Identities=12% Similarity=0.053 Sum_probs=176.3
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCc---------hHHHHHHHHHHHHcCCCCch
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL---------LNVGTQAQAYMTKRGLISHP 81 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~~~ 81 (373)
...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 456889999999999999999999999999999999999999999987654 78999999999999999999
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTP----EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 157 (373)
.|||+||.+|++.|++++|.++|++|. .||..|||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999997 5899999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA 196 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 196 (373)
++.|++++|.+++++|.+. |+.|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999655 9999999999999999874
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-32 Score=263.74 Aligned_cols=201 Identities=13% Similarity=0.069 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHhcCCCCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC---------H
Q 047393 28 EMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK---------I 97 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 97 (373)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456667788877776554 45889999999999999999999999999999999999999999988765 7
Q ss_pred HHHHHHHccCC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 98 DDADLAFKSTP----EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 98 ~~A~~~~~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
++|.++|++|. .||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999996 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHc
Q 047393 174 EEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP--GKLCPLIWRTLLLSSRVH 229 (373)
Q Consensus 174 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~li~~~~~~ 229 (373)
.+. |+.||..||++||.+|++.|+.++|.++|++|-. ..|+..||+.++..++..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 665 9999999999999999999999999999999433 789999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=7.3e-25 Score=214.81 Aligned_cols=321 Identities=8% Similarity=-0.060 Sum_probs=228.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 3 f~~m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
|+.+|.+++..|+.++..|.+.|++++|+++|++|.. ..||..++..++.+|.+.|++++|..+|+.+... +++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 151 (597)
T 2xpi_A 76 QNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSA 151 (597)
T ss_dssp ------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHH
T ss_pred cccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchh
Confidence 5667788999999999999999999999999999985 5688899999999999999999999999988543 68899
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCC-------------------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEK-------------------NSLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 143 (373)
+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999965433 488999999999999999999999999976532
Q ss_pred ----------------------------------------------------------------------CCCHHHHHHH
Q 047393 144 ----------------------------------------------------------------------SMNPTTFRSA 153 (373)
Q Consensus 144 ----------------------------------------------------------------------~p~~~t~~~l 153 (373)
+++..+++.+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 1566667777
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCH
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDM 232 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 232 (373)
+.+|.+.|++++|..+|+++.+. + +.+..+++.++.+|.+.|+.++|.+++++++...| ++.+|+.++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 77777777777777777777554 1 33556677777777777777777777776544334 567788888888888888
Q ss_pred HHHHHHHHHHhccCCCC---ccchhheecceEEEEecCCcchHHHHHHHHHHHHHHHHCCCccCCchhhhHH--------
Q 047393 233 KLAKYALDKLLELDPGM---YVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKM-------- 301 (373)
Q Consensus 233 ~~A~~~~~~m~~~~P~~---y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~-------- 301 (373)
++|.++|+++.+..|+. |.. +...+...+.++.+.++++.+.+.+ ..+..++....
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIG------------FAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC
Confidence 88888888888777765 111 0000222334566677777776543 12333322111
Q ss_pred ----HHHHhhhccCCCCCc---EEEEeeccccCChhHHHHHHHhHhCc
Q 047393 302 ----KAVALGLISFPHGMP---TRVIKSVGMCGYSHSACRFMSTIIER 342 (373)
Q Consensus 302 ----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~ 342 (373)
.......+...+..+ ..+...+...|+.++|..++.++.+.
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 111111222122222 22445667788888999998888764
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=2.4e-23 Score=204.02 Aligned_cols=242 Identities=11% Similarity=-0.045 Sum_probs=217.1
Q ss_pred CCCCCC--CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc
Q 047393 3 LCSLIS--DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH 80 (373)
Q Consensus 3 f~~m~~--p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 80 (373)
|+++.+ +|..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+++.++.++.+.|++++|.++++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 344444 899999999999999999999999999999764 3377889999999999999999999999998664 567
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 157 (373)
..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.+..+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8999999999999999999999999875 3468899999999999999999999999998774 45889999999999
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCC--HHHHHHHHHHHHHc
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG------KLC--PLIWRTLLLSSRVH 229 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~--~~~~~~li~~~~~~ 229 (373)
.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++++.. .|+ ..+|..+..+|.+.
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999997652 457899999999999999999999999996543 676 78999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCC
Q 047393 230 GDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 230 g~~~~A~~~~~~m~~~~P~~ 249 (373)
|++++|.+.++++.+.+|++
T Consensus 530 g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999988876
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=2.5e-18 Score=159.48 Aligned_cols=292 Identities=10% Similarity=0.042 Sum_probs=188.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
+..+|+.+...|.+.|++++|++.|+++.+. .|+ ..+|..+..++.+.|++++|.+.++.+.+.. +.+...+..+.
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 142 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4556777777777777777777777777653 343 3456667777777777777777777776653 23344556666
Q ss_pred HHhHhcCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
..|.+.|++++|.+.|+++. .| +..+|+.+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 66777777777777776654 22 45667777777777777777777777776653 2345666677777777777777
Q ss_pred HHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 166 AYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
|...+++..+. .| +..++..+...|.+.|++++|.+.|++++...| ++.+|..+...+.+.|++++|...++++.
T Consensus 222 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 222 AVAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776543 34 466777777777788888888888877666556 46677777777788888888888888877
Q ss_pred ccCCCC---ccc-hhheecceEEEEecCCcchHHHHHHHHHHHHHHHHCCCccCCchhhhHHHHHHhhhccCCCCCcEEE
Q 047393 244 ELDPGM---YVG-CWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNRSLYQTKMKAVALGLISFPHGMPTRV 319 (373)
Q Consensus 244 ~~~P~~---y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (373)
+..|++ +.. +.+ ....+.++.+...++.+.+ ..|+....+.. +
T Consensus 299 ~~~p~~~~~~~~l~~~-------------~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~------------------l 345 (388)
T 1w3b_A 299 RLCPTHADSLNNLANI-------------KREQGNIEEAVRLYRKALE--VFPEFAAAHSN------------------L 345 (388)
T ss_dssp HHCTTCHHHHHHHHHH-------------HHTTTCHHHHHHHHHHHTT--SCTTCHHHHHH------------------H
T ss_pred hhCcccHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHh--cCCCcHHHHHH------------------H
Confidence 777765 111 111 1111223445555555443 24543322211 1
Q ss_pred EeeccccCChhHHHHHHHhHhC
Q 047393 320 IKSVGMCGYSHSACRFMSTIIE 341 (373)
Q Consensus 320 ~~~~~~~~~~~~a~~~~~~~~~ 341 (373)
...+...|+.++|...+.++..
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 2234567899999999999886
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=187.13 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=124.5
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 047393 80 HPAVGNCLININSRCGKIDDADLAFKSTP-------EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 152 (373)
-..|||+||++||+.|++++|.++|++|. .||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45699999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC-HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCC----CCHHHHHHHHHHHH
Q 047393 153 ALKAYALMGL-VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK----LCPLIWRTLLLSSR 227 (373)
Q Consensus 153 ll~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~li~~~~ 227 (373)
+|+++|+.|+ .++|.++|++|.+. |+.||..+|++++.+..+.+-++...++... ++.. |.+.+...|.+.|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~-f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT-FSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC-CCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc-cCCCCCCcccccchHHHHHHHc
Confidence 9999999998 57899999999776 9999999999999988887666655555444 3311 11344445555665
Q ss_pred HcC
Q 047393 228 VHG 230 (373)
Q Consensus 228 ~~g 230 (373)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.82 E-value=1.4e-17 Score=154.36 Aligned_cols=234 Identities=13% Similarity=0.030 Sum_probs=140.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDS-YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
+..+|+.+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.|+.+.+.. +.+..+|+.+.
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 176 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLG 176 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456777777777777777777777777764 3443 345556666677777777777777776653 33456677777
Q ss_pred HHhHhcCCHHHHHHHHccCCC--C-----------------------------------ChhHHHHHHHHHHhCCChHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE--K-----------------------------------NSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~--~-----------------------------------d~~~~~~li~~~~~~g~~~~A 131 (373)
..|.+.|++++|...|+++.+ | +..+|..+...|.+.|++++|
T Consensus 177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777665431 1 344555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 132 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
.+.|+++.+.+ +.+..+|..+...+.+.|++++|...++++.+. .+.+..+++.+...+.+.|++++|.+.++++++
T Consensus 257 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 257 IDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555542 223445555555555666666666666655443 133455555566666666666666666665555
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 212 GKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 212 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..| +..+|..+...+.+.|++++|...++++.+.+|+.
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 444 34555555666666666666666666666555543
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=9e-21 Score=187.82 Aligned_cols=146 Identities=7% Similarity=0.048 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHH---HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC----CCChhHHHHH
Q 047393 46 SYSICDILNSCLNPILLNVGTQAQAYMT---KRGLISHPAVGNCLININSRCGKIDDADLAFKSTP----EKNSLSWTFI 118 (373)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~d~~~~~~l 118 (373)
..||+++|++||+.|++++|.++|.+|. +.|+.||++|||+||++||+.|++++|.++|++|. .||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998875 45889999999999999999999999999999996 5899999999
Q ss_pred HHHHHhCCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC------HhHHHHHHH
Q 047393 119 ISARVNHGHP-SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS------EEHYSIMVE 191 (373)
Q Consensus 119 i~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~------~~~~~~li~ 191 (373)
|.++|+.|+. ++|.++|++|.+.|+.||..||+++++++.+.+-+ +..+++.. ++.|+ ..+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv~P--~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKVKP--TFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGGCC--CCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHhCc--ccCCCCCCcccccchHHHHH
Confidence 9999999985 78999999999999999999999999877765443 34444422 33443 455566777
Q ss_pred HHHhcC
Q 047393 192 ALGRAG 197 (373)
Q Consensus 192 ~~~~~g 197 (373)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=2.6e-17 Score=155.32 Aligned_cols=236 Identities=10% Similarity=-0.012 Sum_probs=204.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.+...|..+...+.+.|++++|+++|+++.+. .+.+..++..+..++.+.|++++|...++.+.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35678999999999999999999999999875 23467889999999999999999999999998876 45688999999
Q ss_pred HHhHhcCCHHHHHHHHccCCC--C-Ch---hHHHHHHH------------HHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE--K-NS---LSWTFIIS------------ARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~--~-d~---~~~~~li~------------~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 150 (373)
.+|.+.|++++|.+.|+++.+ | +. .+|..++. .+.+.|++++|.+.|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999998864 3 33 56666644 4889999999999999998864 4578899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHH-------
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTL------- 222 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l------- 222 (373)
..+...|.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|.+.|++++...|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999997653 557899999999999999999999999997776664 4555555
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 223 -----LLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 223 -----i~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
...+...|++++|...++++.+..|++
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~ 290 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSI 290 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence 788999999999999999999988875
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=4.6e-17 Score=153.56 Aligned_cols=189 Identities=9% Similarity=-0.020 Sum_probs=104.2
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHH
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEAL 132 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 132 (373)
+.+.|++++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|.
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 333444444444444443332 2334444555555555555555555555443 124555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHhHHHcCCCCC-----HhHHHHHHHHHHh
Q 047393 133 DLFKDKQWRYTSMNPTTFRSA------------LKAYALMGLVGEAYRLFLSMEEVYHIEPS-----EEHYSIMVEALGR 195 (373)
Q Consensus 133 ~l~~~m~~~g~~p~~~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~ 195 (373)
+.|+++.+.. +.+...+..+ ...+.+.|++++|..+|+++.+. .|+ ..++..+...+.+
T Consensus 232 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 232 SEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHH
Confidence 6666665442 1222333322 45566666666666666666543 333 3355666666666
Q ss_pred cCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 196 AGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.|++++|.+.++++++..| +...|..+..+|...|++++|...++++.+++|++
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 6666666666666554444 45666666666666666666666666666666655
No 11
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.5e-16 Score=141.91 Aligned_cols=228 Identities=11% Similarity=0.003 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-chhHHHHHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLIS-HPAVGNCLINI 90 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~ 90 (373)
...-.+..+|...|++++|+..++. .-.|+..++..+...+...++.++|.+.++.+.+.+..| +...+..+...
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~ 110 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 3456678999999999999986654 235677889999999999999999999999999887545 56677777899
Q ss_pred hHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHH
Q 047393 91 NSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF---RSALKAYALMGLVGEAY 167 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~a~ 167 (373)
|.+.|++++|++.|++ ..+...+..++..+.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|.
T Consensus 111 ~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 111 YFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 9999999999999999 5678899999999999999999999999998874 554321 22334445669999999
Q ss_pred HHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcc
Q 047393 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKL-AKYALDKLLEL 245 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 245 (373)
.+|+++.+. .+.+...++.+..++.+.|++++|.+.|++++...| ++.++..++..+...|+.++ +.++++++.+.
T Consensus 187 ~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 187 YIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999776 366889999999999999999999999999888777 67899999999999998876 67899999999
Q ss_pred CCCC
Q 047393 246 DPGM 249 (373)
Q Consensus 246 ~P~~ 249 (373)
+|++
T Consensus 265 ~P~~ 268 (291)
T 3mkr_A 265 HRSH 268 (291)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9987
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=4e-17 Score=149.92 Aligned_cols=238 Identities=12% Similarity=-0.077 Sum_probs=198.8
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
..+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+++.+.. +.+..++..+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3466779999999999999999999999998853 3367789999999999999999999999998875 4568899999
Q ss_pred HHHhHhcCCHHHHHHHHccCCC--C-C----------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 047393 88 ININSRCGKIDDADLAFKSTPE--K-N----------SLSWTFIISARVNHGHPSEALDLFKDKQWRYTS-MNPTTFRSA 153 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~--~-d----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~l 153 (373)
...|.+.|++++|.+.|+++.+ | + ...+..+...+...|++++|.+.|+++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998763 2 1 233445688899999999999999999887422 268899999
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCH
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDM 232 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 232 (373)
...+.+.|++++|...+++..+.. +.+..+|..+..+|.+.|++++|.+.|++++...| +..+|..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999997652 44688999999999999999999999999877667 478999999999999999
Q ss_pred HHHHHHHHHHhccCCCC
Q 047393 233 KLAKYALDKLLELDPGM 249 (373)
Q Consensus 233 ~~A~~~~~~m~~~~P~~ 249 (373)
++|...++++.++.|+.
T Consensus 298 ~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCccc
Confidence 99999999999977654
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-15 Score=137.63 Aligned_cols=236 Identities=10% Similarity=-0.070 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.|...+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455566667777777788888888888777642 2234455556666777777888887777777654 34566777777
Q ss_pred HHhHhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047393 89 NINSRCG-KIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164 (373)
Q Consensus 89 ~~~~~~g-~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 164 (373)
..|...| ++++|.+.|++..+ .+..+|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 7777777 77777777776542 245667777777777777777777777776653 223455666777777777777
Q ss_pred HHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC----------CCCHHHHHHHHHHHHHcCCHHH
Q 047393 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG----------KLCPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 165 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~li~~~~~~g~~~~ 234 (373)
+|...+++..+. .+.+...+..+...+.+.|++++|...+++++.. .....+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 777777776543 2335566777777777777777777777765431 2234677777777777777777
Q ss_pred HHHHHHHHhccCCCC
Q 047393 235 AKYALDKLLELDPGM 249 (373)
Q Consensus 235 A~~~~~~m~~~~P~~ 249 (373)
|...+++..+..|+.
T Consensus 255 A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 255 ALDYHRQALVLIPQN 269 (330)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhhCccc
Confidence 777777777776666
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=4.8e-16 Score=142.47 Aligned_cols=235 Identities=11% Similarity=-0.098 Sum_probs=198.2
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...++.+.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56778899999999999999999999999853 3366788999999999999999999999998876 557889999999
Q ss_pred HhHhcCCHHHHHHHHccCCC--C-ChhHHHH---------------HHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPE--K-NSLSWTF---------------IISARVNHGHPSEALDLFKDKQWRYTS-MNPTTF 150 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 150 (373)
.|.+.|++++|.+.|+++.+ | +...+.. .+..+...|++++|.+.|+++.+.... ++..++
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999987652 2 2222221 233444889999999999999887422 158899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVH 229 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 229 (373)
..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.|++++...| +...|..+...+.+.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 999999999999999999999997652 44678999999999999999999999999777666 578999999999999
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047393 230 GDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 230 g~~~~A~~~~~~m~~~~P~ 248 (373)
|++++|...++++.++.|+
T Consensus 299 g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999986654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=2e-15 Score=135.88 Aligned_cols=237 Identities=10% Similarity=-0.042 Sum_probs=204.6
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
+..++..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|.+.++...+.. +.+...|..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 45667778889999999999999999998853 235678888889999999 9999999999998765 45678899999
Q ss_pred HHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
..|.+.|++++|.+.|++..+ .+..++..+...|...|++++|.+.+++..+.. +.+..++..+...+...|++++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 211 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKT 211 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHH
Confidence 999999999999999988752 356778889999999999999999999998764 4567899999999999999999
Q ss_pred HHHHHHHhHHHcC-------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 047393 166 AYRLFLSMEEVYH-------IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKY 237 (373)
Q Consensus 166 a~~~~~~m~~~~g-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 237 (373)
|...+++..+... .+....++..+...|.+.|++++|.+.+++++...| +...|..+...+...|++++|..
T Consensus 212 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 9999999876421 133467899999999999999999999999776555 57899999999999999999999
Q ss_pred HHHHHhccCCCC
Q 047393 238 ALDKLLELDPGM 249 (373)
Q Consensus 238 ~~~~m~~~~P~~ 249 (373)
.++++.+++|++
T Consensus 292 ~~~~al~~~p~~ 303 (330)
T 3hym_B 292 YFHTALGLRRDD 303 (330)
T ss_dssp HHHTTTTTCSCC
T ss_pred HHHHHHccCCCc
Confidence 999999998876
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3e-17 Score=151.42 Aligned_cols=215 Identities=11% Similarity=-0.004 Sum_probs=101.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 3 LCSLISDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 3 f~~m~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
|++++.| .+|+.+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++..++. .+++.
T Consensus 26 ae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~ 95 (449)
T 1b89_A 26 AERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cccch
Confidence 3455555 49999999999999999999999653 67889999999999999999999988777664 56688
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..+..++.+.|+
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 163 (449)
T ss_dssp -------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc
Confidence 999999999999999999988864 78889999999999999999999999977 489999999999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
+++|.+.++.+ .++.+|..++.+|...|+++.|...... +...|+ -...++..|.+.|++++|..+++..
T Consensus 164 yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad--~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 164 YQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD--ELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh--hHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999877 2789999999999999999999777666 444444 3557999999999999999999999
Q ss_pred hccCCCC
Q 047393 243 LELDPGM 249 (373)
Q Consensus 243 ~~~~P~~ 249 (373)
.+.+|..
T Consensus 234 L~le~ah 240 (449)
T 1b89_A 234 LGLERAH 240 (449)
T ss_dssp TTSTTCC
T ss_pred hCCcHHH
Confidence 9988777
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.3e-15 Score=136.96 Aligned_cols=235 Identities=9% Similarity=-0.094 Sum_probs=197.3
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.+...|..+...+...|++++|.++|+++.+.. +.+..++..+..++.+.|++++|.+.++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 356678888899999999999999999998753 2366788889999999999999999999998875 55788999999
Q ss_pred HHhHhcCCHHHHHHHHccCCC--C-ChhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE--K-NSLSWTFI--------------IS-ARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 150 (373)
..|.+.|++++|.+.|++..+ | +...+..+ .. .+...|++++|.+.++++.+.. +.+..++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 999999999999999987653 2 33333333 22 3777899999999999998874 4478899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVH 229 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 229 (373)
..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.|++++...| +..+|..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999997652 44678899999999999999999999999777556 578999999999999
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047393 230 GDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 230 g~~~~A~~~~~~m~~~~P~ 248 (373)
|++++|.+.++++.+..|+
T Consensus 254 g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCc
Confidence 9999999999999987765
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.69 E-value=1.7e-14 Score=131.05 Aligned_cols=189 Identities=9% Similarity=0.004 Sum_probs=83.7
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHH
Q 047393 55 SCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 55 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A 131 (373)
.+...|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+..+|..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3334444444444444443332 22334444444444444444444444443321 2344444444444555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHH------------HHHHHHHccCCHHHHHHHHHHhHHHcCCCCC-H----hHHHHHHHHHH
Q 047393 132 LDLFKDKQWRYTSMNPTTFR------------SALKAYALMGLVGEAYRLFLSMEEVYHIEPS-E----EHYSIMVEALG 194 (373)
Q Consensus 132 ~~l~~~m~~~g~~p~~~t~~------------~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~----~~~~~li~~~~ 194 (373)
.+.|++..+.. +.+..++. .+...+.+.|++++|...++++.+. .|+ . ..+..+...+.
T Consensus 208 ~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 208 LSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHH
Confidence 55554444431 11112111 1133344455555555555554333 122 1 11223444555
Q ss_pred hcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 195 RAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
+.|++++|.+.+++++...| ++.+|..+...+...|++++|...++++.+++|+
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 55555555555555444333 4445555555555555555555555555555443
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.8e-15 Score=131.22 Aligned_cols=224 Identities=10% Similarity=-0.007 Sum_probs=192.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--CCc----hhHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGL--ISH----PAVG 84 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~ 84 (373)
...|..+...+...|++++|++.|++..+.. .+...+..+..++...|++++|...++...+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578889999999999999999999999876 7888999999999999999999999999876531 112 5788
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 85 NCLININSRCGKIDDADLAFKSTPE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
..+...|.+.|++++|.+.|++..+ |+. ..+.+.|++++|...++++.... +.+...+..+...+...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988763 442 45667788999999999988763 3345678888999999999
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (373)
+++|...+++..+.. +.+..++..+...|.+.|++++|.+.|++++...| ++..|..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999997652 44678899999999999999999999999777666 578999999999999999999999999
Q ss_pred HhccC
Q 047393 242 LLELD 246 (373)
Q Consensus 242 m~~~~ 246 (373)
..++.
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99876
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=2e-15 Score=138.50 Aligned_cols=227 Identities=11% Similarity=-0.021 Sum_probs=187.7
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-h------
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH-P------ 81 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~------ 81 (373)
.+..+|+.+...|.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...++++.+.. |+ .
T Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 173 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK 173 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhh
Confidence 467889999999999999999999999998853 2357789999999999999999999999998754 32 2
Q ss_pred ----hHHHHHHHHhHhcCCHHHHHHHHccCCC--C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 047393 82 ----AVGNCLININSRCGKIDDADLAFKSTPE--K---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRS 152 (373)
Q Consensus 82 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 152 (373)
.++..+...|.+.|++++|.+.|+++.+ | +..+|..+...|...|++++|.+.|++..+.. +.+..++..
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 252 (365)
T 4eqf_A 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNR 252 (365)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 2334457889999999999999998762 3 67899999999999999999999999998874 456889999
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-------------HHHH
Q 047393 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-------------PLIW 219 (373)
Q Consensus 153 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~ 219 (373)
+..+|.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.|++++...|+ ...|
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 9999999999999999999997652 345888999999999999999999999997653333 5789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 047393 220 RTLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 220 ~~li~~~~~~g~~~~A~~~~~~ 241 (373)
..+..++...|+.+.+..+.++
T Consensus 331 ~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 331 AALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999998887765
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.67 E-value=3e-14 Score=129.44 Aligned_cols=235 Identities=9% Similarity=-0.044 Sum_probs=198.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
|+..|..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998753 2357788899999999999999999999998875 446788999999
Q ss_pred HhHhcCCHHHHHHHHccCCC--C----ChhHHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPE--K----NSLSWTFI------------ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR 151 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~--~----d~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 151 (373)
.|.+.|++++|...|++..+ | +...+..+ ...+...|++++|.+.++++.+.. +.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 99999999999999998754 3 33444444 578899999999999999998874 45788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHH----------
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWR---------- 220 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~---------- 220 (373)
.+...+...|++++|...++.+.+. .+.+..++..+...+...|++++|.+.|++++...|+ ...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999654 2457789999999999999999999999997775564 44443
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 221 --TLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 221 --~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+...+.+.|++++|...++++.+..|++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 267 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSV 267 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 23667899999999999999999988876
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=6.6e-15 Score=132.26 Aligned_cols=231 Identities=8% Similarity=-0.037 Sum_probs=193.2
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH-
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL- 87 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l- 87 (373)
.+..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.. +.+...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 130 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNL 130 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHh
Confidence 366788999999999999999999999998853 3367788899999999999999999999998764 2333333333
Q ss_pred -------------HH-HhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 047393 88 -------------IN-INSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTF 150 (373)
Q Consensus 88 -------------i~-~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 150 (373)
.. .+...|++++|.+.+++.. ..+..++..+...+...|++++|.+.++++.+.. +.+..++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 33 4888899999999998875 3367889999999999999999999999998874 4567899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-------------HH
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-------------PL 217 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~ 217 (373)
..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++++...|+ ..
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence 999999999999999999999987652 446788999999999999999999999997765555 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 218 IWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.|..+..++...|+.++|..++++..+
T Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999887655
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.5e-15 Score=141.45 Aligned_cols=236 Identities=11% Similarity=-0.041 Sum_probs=205.1
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+..+|..+...+...|++++|.+.|+++.+.. |+..++..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 45678899999999999999999999998864 457788999999999999999999999998765 456788999999
Q ss_pred HhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 90 INSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
.|.+.|++++|...|++.. ..+..+|..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998764 3467889999999999999999999999998763 34677889999999999999999
Q ss_pred HHHHHHhHHHcCCCCC----HhHHHHHHHHHHh---cCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 047393 167 YRLFLSMEEVYHIEPS----EEHYSIMVEALGR---AGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYA 238 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 238 (373)
...++++.+...-.++ ...+..+...+.+ .|++++|.+.|++++...| ++.+|..+...+.+.|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998765322232 3488999999999 9999999999999777556 678899999999999999999999
Q ss_pred HHHHhccCCCC
Q 047393 239 LDKLLELDPGM 249 (373)
Q Consensus 239 ~~~m~~~~P~~ 249 (373)
++++.++.|++
T Consensus 472 ~~~a~~~~~~~ 482 (514)
T 2gw1_A 472 FEESADLARTM 482 (514)
T ss_dssp HHHHHHHCSSH
T ss_pred HHHHHHhcccc
Confidence 99999988754
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=6.2e-15 Score=135.04 Aligned_cols=231 Identities=12% Similarity=-0.042 Sum_probs=193.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHH--
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNC-- 86 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-- 86 (373)
.+..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 173 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAE 173 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 467789999999999999999999999998853 3367789999999999999999999999998865 222333321
Q ss_pred -------------HHHHhHhcCCHHHHHHHHccCC--CC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 047393 87 -------------LININSRCGKIDDADLAFKSTP--EK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT 148 (373)
Q Consensus 87 -------------li~~~~~~g~~~~A~~~~~~m~--~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 148 (373)
.+..+.+.|++++|...|+++. .| +..+|..+...|.+.|++++|...|+++.+.. +.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 2334448999999999998875 23 57889999999999999999999999998873 44678
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC------------H
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC------------P 216 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------------~ 216 (373)
++..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++++...|+ .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 99999999999999999999999997652 446788999999999999999999999997664332 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 217 LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+|..+..++...|+.++|..++++..+
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 8999999999999999999998875443
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-14 Score=138.37 Aligned_cols=232 Identities=12% Similarity=-0.040 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
..|......+.+.|++++|++.|+++.... ||..++..+..++.+.|++++|.+.++.+++.. +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345555566666666666666666666643 566666666666666666666666666666554 34455666666666
Q ss_pred HhcCCHHHHHHHHccCCCC---C---------------------------------------------------------
Q 047393 92 SRCGKIDDADLAFKSTPEK---N--------------------------------------------------------- 111 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~---d--------------------------------------------------------- 111 (373)
.+.|++++|...|+++.+. +
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 6666666666666543210 0
Q ss_pred ----------------------hhHHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCC--------CCHHHHHHH
Q 047393 112 ----------------------SLSWTFIISARVN---HGHPSEALDLFKDKQW-----RYTS--------MNPTTFRSA 153 (373)
Q Consensus 112 ----------------------~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~--------p~~~t~~~l 153 (373)
...+......+.. .|++++|...|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112222222222 5666666666666655 2111 123455555
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCH
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDM 232 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 232 (373)
...+...|++++|...++++.+. .|+...+..+...|...|++++|.+.+++++...| +...|..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 56666666666666666666443 23355556666666666666666666666555444 445566666666666666
Q ss_pred HHHHHHHHHHhccCCCC
Q 047393 233 KLAKYALDKLLELDPGM 249 (373)
Q Consensus 233 ~~A~~~~~~m~~~~P~~ 249 (373)
++|...++++.+..|+.
T Consensus 321 ~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPEN 337 (514)
T ss_dssp THHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHhChhh
Confidence 66666666666655554
No 26
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=5.2e-14 Score=123.32 Aligned_cols=221 Identities=14% Similarity=-0.081 Sum_probs=184.6
Q ss_pred HcCCHhHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHH
Q 047393 23 KAKDYEMVHELLERIQLCCGF--I-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDD 99 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 99 (373)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457899999999999986321 2 45678889999999999999999999998875 4568899999999999999999
Q ss_pred HHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHH
Q 047393 100 ADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 100 A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 176 (373)
|.+.|++..+ .+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998763 36889999999999999999999999999886 455555555556667789999999999888665
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-----PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 177 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
. +++...+ .++..+...++.++|.+.+++++...|+ ..+|..+...+...|++++|...++++.+.+|++
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 2 4444444 4777788888999999999997775553 5789999999999999999999999999998866
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=9.2e-14 Score=120.34 Aligned_cols=200 Identities=11% Similarity=-0.057 Sum_probs=137.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHH
Q 047393 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARV 123 (373)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~ 123 (373)
..+..+...+...|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|.+.|++.. ..+...|..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 345555555566666666666666665543 3345566666666666666666666666543 235566677777777
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 202 (373)
..|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776633344 34566777777788888888888888776542 33567777888888888888888
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 203 LEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 203 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+.+++++...| +...+..+...+...|+.++|.+.++++.+..|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 888888666554 56677777788888888888888888888877765
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.62 E-value=5.2e-14 Score=135.59 Aligned_cols=234 Identities=9% Similarity=-0.043 Sum_probs=198.1
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
.+|..+...+...|++++|.+.|++..+. .|+..++..+...+...|++++|...++.+.+.. +.+..++..+...|
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH
Confidence 35777788899999999999999999985 5777889999999999999999999999998875 45688999999999
Q ss_pred HhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047393 92 SRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 168 (373)
.+.|++++|.+.|++.. ..+..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999998775 2367889999999999999999999999998874 4457788999999999999999999
Q ss_pred HHHHhHHHcCCCC----CHhHHHHHHHHHHhc----------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHH
Q 047393 169 LFLSMEEVYHIEP----SEEHYSIMVEALGRA----------GMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMK 233 (373)
Q Consensus 169 ~~~~m~~~~g~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 233 (373)
.++++.+...-.+ ....+......+.+. |++++|...|++++...| +...|..+...+...|+++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 9999865421111 222344555677777 999999999999777566 5789999999999999999
Q ss_pred HHHHHHHHHhccCCCC
Q 047393 234 LAKYALDKLLELDPGM 249 (373)
Q Consensus 234 ~A~~~~~~m~~~~P~~ 249 (373)
+|...|+++.++.|+.
T Consensus 480 ~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 480 EAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHhCCCc
Confidence 9999999999988755
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1.5e-14 Score=128.92 Aligned_cols=217 Identities=10% Similarity=0.047 Sum_probs=178.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDS--YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG 95 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 95 (373)
|+.....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+..++..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4556778999999998877654 34554 3556678899999999999876644 24678889999999999999
Q ss_pred CHHHHHHHHccCC----CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047393 96 KIDDADLAFKSTP----EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLF 170 (373)
Q Consensus 96 ~~~~A~~~~~~m~----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 170 (373)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 25 566677778999999999999999987 568889999999999999999999999
Q ss_pred HHhHHHcCCCCCHhHH---HHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 047393 171 LSMEEVYHIEPSEEHY---SIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246 (373)
Q Consensus 171 ~~m~~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 246 (373)
+.+.+. .|+.... ...+..+...|++++|..+|++++...| ++..|+.+..++.+.|++++|...++++.+.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999765 4654211 2233444556999999999999776455 78899999999999999999999999999999
Q ss_pred CCC
Q 047393 247 PGM 249 (373)
Q Consensus 247 P~~ 249 (373)
|++
T Consensus 231 p~~ 233 (291)
T 3mkr_A 231 SGH 233 (291)
T ss_dssp TTC
T ss_pred CCC
Confidence 987
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=4.7e-14 Score=123.56 Aligned_cols=232 Identities=13% Similarity=0.004 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc--hhHHHHHHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH--PAVGNCLIN 89 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~ 89 (373)
.+......+...|++++|++.|++..+. .| +...+..+..++...|++++|...++...+..-.|+ ...|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 4455677889999999999999999875 34 445788888999999999999999999988432222 234888999
Q ss_pred HhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 90 INSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
.|.+.|++++|.+.|++.. ..+..+|..+...|...|++++|.+.|++..+.. +.+..++..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998775 3467899999999999999999999999988762 44566777776244445699999
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHhhCCC---CCC------HHHHHHHHHHHHHcCCHHH
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM---FEEVLEFIKGIVPG---KLC------PLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~li~~~~~~g~~~~ 234 (373)
...++++.+.. +.+...+..+...+...|+ .++|...+++++.. .|+ ..+|..+...|...|++++
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999997652 3346777888888888888 77788888776542 244 2578889999999999999
Q ss_pred HHHHHHHHhccCCCC
Q 047393 235 AKYALDKLLELDPGM 249 (373)
Q Consensus 235 A~~~~~~m~~~~P~~ 249 (373)
|...++++.+++|++
T Consensus 240 A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 240 ADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCccH
Confidence 999999999999987
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1.8e-13 Score=115.91 Aligned_cols=205 Identities=10% Similarity=-0.078 Sum_probs=110.4
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~--- 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN--- 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH---
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH---
Confidence 44566666667777777777777777666532 2234555556666666666666666666665443 223444444
Q ss_pred HhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNH-GHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 167 (373)
+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.
T Consensus 82 ----------------------------l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 82 ----------------------------YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp ----------------------------HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 44444455 555555555555444222222 344455555555555555555
Q ss_pred HHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
..++++.+.. +.+...+..+...+.+.|++++|.+.+++++...| +...+..+...+...|+.+.|..+++.+.+.
T Consensus 134 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5555554331 22345555555555566666666666555444323 3445555555555666666666666665555
Q ss_pred CCCC
Q 047393 246 DPGM 249 (373)
Q Consensus 246 ~P~~ 249 (373)
.|++
T Consensus 212 ~p~~ 215 (225)
T 2vq2_A 212 FPYS 215 (225)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5543
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.8e-13 Score=118.42 Aligned_cols=205 Identities=6% Similarity=-0.080 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5778999999999999999999999998753 3367788889999999999999999999998875 4577889999999
Q ss_pred hHhcCCHHHHHHHHccCCC----C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 91 NSRCGKIDDADLAFKSTPE----K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~----~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
|.+.|++++|.+.|++..+ | +...|..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998765 3 46778889999999999999999999998874 4468889999999999999999
Q ss_pred HHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 047393 166 AYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (373)
|...++.+.+. .+.+...+..+...+.+.|+.++|.++++++....|+...+.
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999998653 345677888999999999999999999999766666544433
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=3e-13 Score=114.51 Aligned_cols=167 Identities=10% Similarity=-0.039 Sum_probs=127.4
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCCC-chhHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNP-ILLNVGTQAQAYMTKRGLIS-HPAVGNC 86 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~-~~~~~~~ 86 (373)
.+..+|..+...|...|++++|.+.|+++.+.. +.+..++..+...+... |++++|...++.+.+.+..| +...+..
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 457789999999999999999999999998753 33667888899999999 99999999999998733333 3567777
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047393 87 LININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 163 (373)
+...|.+.|++++|.+.|++..+ .+...+..+...+.+.|++++|.+.+++..+.....+...+..+...+...|+.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 88888888888888888876542 346677777777777788888877777776653214566666666677777777
Q ss_pred HHHHHHHHHhHHH
Q 047393 164 GEAYRLFLSMEEV 176 (373)
Q Consensus 164 ~~a~~~~~~m~~~ 176 (373)
+.|..+++.+.+.
T Consensus 199 ~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 199 QAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777543
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=4.7e-14 Score=121.21 Aligned_cols=197 Identities=13% Similarity=0.018 Sum_probs=109.7
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhC
Q 047393 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNH 125 (373)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~ 125 (373)
+..+...+.+.|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|++.. ..+..+|..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3333334444444444444444443322 2234444444444455555555555444432 12445556666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047393 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEF 205 (373)
Q Consensus 126 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 205 (373)
|++++|.+.++++.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+...+..+...+.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666553 3355666666667777777777777777765441 33556666777777777777777777
Q ss_pred HHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 206 IKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 206 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
|++++...| +..+|..+...+...|++++|...++++.+..|++
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 777555444 46677777777777777777777777777777665
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.8e-13 Score=116.50 Aligned_cols=193 Identities=16% Similarity=-0.022 Sum_probs=122.0
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
++...|..+...+.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|...+++.++.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45667888888888999999999999888764 34 55677888888888899999999998887765 4456777778
Q ss_pred HHHhHhc-----------CCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047393 88 ININSRC-----------GKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA 153 (373)
Q Consensus 88 i~~~~~~-----------g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 153 (373)
...|.+. |++++|...|++.. .| +...|..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 8888777 66666666665543 22 45556666666666666666666666665554 455566666
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
..++...|++++|...|++..+.. +.+...+..+...+.+.|+.++|.+.|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666666666654431 22445555555666666666666666555
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.59 E-value=2.3e-13 Score=131.04 Aligned_cols=232 Identities=9% Similarity=-0.041 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++.+.+.. +.+..++..+..+|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456666667777777777777777776642 2255666667777777777777777777776654 34566666677777
Q ss_pred HhcCCHHHHHHHHccC----------------------------------------------------------------
Q 047393 92 SRCGKIDDADLAFKST---------------------------------------------------------------- 107 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m---------------------------------------------------------------- 107 (373)
.+.|++++|.+.|+.+
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 7777777776655322
Q ss_pred ---------------------------------------------CC--CC--------hhHHHHHHHHHHhCCChHHHH
Q 047393 108 ---------------------------------------------PE--KN--------SLSWTFIISARVNHGHPSEAL 132 (373)
Q Consensus 108 ---------------------------------------------~~--~d--------~~~~~~li~~~~~~g~~~~A~ 132 (373)
.+ |+ ..+|..+...+...|++++|.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 11 11 123455556677778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC
Q 047393 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG 212 (373)
Q Consensus 133 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 212 (373)
+.|++..+. .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.|++++..
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 888888775 4557777778888888888888888888876542 345677788888888888888888888886665
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 213 KL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 213 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.| +...|..+...+...|++++|...++++.+..|++
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 55 45778888888888888888888888888877766
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=7.2e-14 Score=118.91 Aligned_cols=197 Identities=14% Similarity=-0.009 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CC-ChhHHHHHH
Q 047393 43 FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP--EK-NSLSWTFII 119 (373)
Q Consensus 43 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li 119 (373)
+++...+..+...+.+.|++++|...++..++.. +.+...+..+...+.+.|++++|...|++.. .| +...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4567788888899999999999999999998765 5568889999999999999999999999775 34 678899999
Q ss_pred HHHHhC-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHH
Q 047393 120 SARVNH-----------GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSI 188 (373)
Q Consensus 120 ~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 188 (373)
..+.+. |++++|...|++..+.. +-+...+..+-..+...|++++|...|++..+. . .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence 999999 99999999999998873 335788889999999999999999999999776 4 78888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 189 MVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
+..+|...|++++|...|++++...| ++..+..+...+...|++++|...+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999877677 678899999999999999999999887643
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1.3e-12 Score=114.84 Aligned_cols=227 Identities=10% Similarity=-0.088 Sum_probs=196.2
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCCchhHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN----PILLNVGTQAQAYMTKRGLISHPAVG 84 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~ 84 (373)
-+..++..+-..|...|++++|++.|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35678888899999999999999999999883 345677778888888 999999999999998876 67888
Q ss_pred HHHHHHhHh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047393 85 NCLININSR----CGKIDDADLAFKSTPE-KNSLSWTFIISARVN----HGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155 (373)
Q Consensus 85 ~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 155 (373)
..+...|.+ .+++++|.+.|++..+ .+..++..+...|.. .+++++|.+.|++..+.+ +...+..+-.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 889999999 9999999999987654 477889999999999 999999999999999876 6777888888
Q ss_pred HHHc----cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047393 156 AYAL----MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR----AGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSR 227 (373)
Q Consensus 156 ~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~ 227 (373)
.|.. .+++++|...|++..+. .+...+..+...|.. .++.++|.+.|+++++..| +..+..+...|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 8887 99999999999998654 256778888899999 9999999999999776544 778888889999
Q ss_pred H----cCCHHHHHHHHHHHhccCCCC
Q 047393 228 V----HGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 228 ~----~g~~~~A~~~~~~m~~~~P~~ 249 (373)
. .++.++|.+.+++..+.+|+.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 8 999999999999999987754
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=9.5e-14 Score=119.28 Aligned_cols=210 Identities=12% Similarity=-0.025 Sum_probs=160.8
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
..+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 3456778889999999999999999999998742 3367788889999999999999999999998775 4578889999
Q ss_pred HHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047393 88 ININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG 164 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 164 (373)
...|.+.|++++|.+.|++.. ..+...|..+...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999998765 3477889999999999999999999999998763 457888999999999999999
Q ss_pred HHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHH
Q 047393 165 EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTL 222 (373)
Q Consensus 165 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 222 (373)
+|...++++.+.. +.+..++..+...|.+.|+.++|.+.+++++...|+ ...+..+
T Consensus 177 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 9999999997652 446788999999999999999999999997776664 4444443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=2.4e-12 Score=118.93 Aligned_cols=231 Identities=10% Similarity=-0.040 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPIL-LNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
...|+.+-..+.+.|++++|++.|++.... .| +...|+.+..++...|+ +++|...+++.++.. +-+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 467888999999999999999999999984 46 45678889999999997 999999999999876 45788999999
Q ss_pred HHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHH
Q 047393 89 NINSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL-MGLVG 164 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~ 164 (373)
.+|.+.|++++|+..|++.. ..+..+|..+..++.+.|++++|++.|+++++.. +-+...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999876 3478899999999999999999999999999875 3478899999999988 66657
Q ss_pred HH-----HHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcC--CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC-----
Q 047393 165 EA-----YRLFLSMEEVYHIEP-SEEHYSIMVEALGRAG--MFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHG----- 230 (373)
Q Consensus 165 ~a-----~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g----- 230 (373)
+| ...+++..+. .| +...|+.+...+.+.| +.++|.+.+.++ +..| +...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 5788887664 45 6678888888899888 689999999995 6556 5688899999998874
Q ss_pred ----CHHHHHHHHHHH-hccCCCC
Q 047393 231 ----DMKLAKYALDKL-LELDPGM 249 (373)
Q Consensus 231 ----~~~~A~~~~~~m-~~~~P~~ 249 (373)
..++|.++++++ .+++|..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 358999999999 8888643
No 41
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.51 E-value=1.2e-13 Score=127.38 Aligned_cols=207 Identities=13% Similarity=0.039 Sum_probs=115.2
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
.+|..+|..++.++...|++++|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I 128 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 128 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence 478889999999999999999999977766653 4667889999999999999999998884 4788899999
Q ss_pred HHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047393 88 ININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 167 (373)
.+.|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .+..||..++.+|...|+++.|.
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp --------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999988 48999999999999999999999988 38899999999999999999995
Q ss_pred HHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 047393 168 RLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHG--DMKLAKYALD 240 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~ 240 (373)
.....+ ...+.....++..|.+.|++++|..+++..+..++ ....|+-|.-+|++-+ +..+..++|.
T Consensus 198 ~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 198 MCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 544432 23334455799999999999999999999888655 5788888888887653 4455555544
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=8.2e-13 Score=115.61 Aligned_cols=221 Identities=6% Similarity=-0.182 Sum_probs=175.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++..++.. +.+..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHH
Confidence 56789999999999999999999999998853 2367889999999999999999999999998875 456889999999
Q ss_pred HhHhcCCHHHHHHHHccCC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047393 90 INSRCGKIDDADLAFKSTP--EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 167 (373)
.|.+.|++++|.+.|+++. .|+.......+..+...|++++|...+++..... +++...+. ++..+...++.++|.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLM 197 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHH
Confidence 9999999999999999876 3544444555556677799999999998887763 34444444 677778888999999
Q ss_pred HHHHHhHHHcCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047393 168 RLFLSMEEVYHIEPS-----EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239 (373)
Q Consensus 168 ~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 239 (373)
..++...+ ..|+ ..++..+...|.+.|++++|...|++++...|+. +.....++...|++++|.+.+
T Consensus 198 ~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 198 ERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99987643 2332 5788899999999999999999999988877743 223355677788888887765
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=1.7e-11 Score=109.97 Aligned_cols=236 Identities=8% Similarity=-0.036 Sum_probs=185.4
Q ss_pred ChhHHHHHHHHHHHc----CCH----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHc-------CCCch-------HHHHH
Q 047393 10 VEIPWNLLLKACIKA----KDY----EMVHELLERIQLCCGFIDSYSICDILNSCL-------NPILL-------NVGTQ 67 (373)
Q Consensus 10 ~~~~~n~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~ 67 (373)
+...|...+.---+. ++. ++|..+|++..... +-+...|..+...+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345677777754443 233 68899999998742 235566777766664 35775 89999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-Chh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047393 68 AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--K-NSL-SWTFIISARVNHGHPSEALDLFKDKQWRYT 143 (373)
Q Consensus 68 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 143 (373)
+|++.++.--+-+...|..++..+.+.|++++|.++|++..+ | +.. .|..+...+.+.|++++|..+|++..+..
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 999998742234567899999999999999999999998764 3 343 89999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHH-HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC---CC--CHH
Q 047393 144 SMNPTTFRSALKAY-ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPG---KL--CPL 217 (373)
Q Consensus 144 ~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p--~~~ 217 (373)
+++...|....... ...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++++.. .| ...
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 34455555443332 23799999999999997763 446788999999999999999999999997763 44 467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 218 IWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 218 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.|..++....+.|+.+.|..+++++.+..|++
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 89999999999999999999999999988865
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=3.8e-12 Score=104.78 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=135.2
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047393 79 SHPAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK 155 (373)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 155 (373)
.+..+|..+...|.+.|++++|++.|++.. ..+..+|..+...|.+.|++++|...+....... +-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 356678888888888888888888888765 2367788888888888899999988888887763 345667777777
Q ss_pred HHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 047393 156 AYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 234 (373)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|.+.|+++++..| ++.+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888899999999998886542 34677888888899999999999999988777666 57788889999999999999
Q ss_pred HHHHHHHHhccCCCC
Q 047393 235 AKYALDKLLELDPGM 249 (373)
Q Consensus 235 A~~~~~~m~~~~P~~ 249 (373)
|.+.|++.++++|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999888754
No 45
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=120.64 Aligned_cols=239 Identities=12% Similarity=-0.025 Sum_probs=172.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc------C
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLC-------CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR------G 76 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g 76 (373)
+..+|..+...+...|++++|+++|+++.+. .......++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4577999999999999999999999998873 22224567888889999999999999999998764 2
Q ss_pred C-CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC----------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---
Q 047393 77 L-ISHPAVGNCLININSRCGKIDDADLAFKSTPE----------K-NSLSWTFIISARVNHGHPSEALDLFKDKQWR--- 141 (373)
Q Consensus 77 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 141 (373)
- +....++..+...|...|++++|.+.|++..+ + ...++..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 23466888999999999999999999986642 1 3567888899999999999999999998764
Q ss_pred ---CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHHc------CCCCCH-------hHHHHHHHHHHhcCCHHHHHH
Q 047393 142 ---YTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVY------HIEPSE-------EHYSIMVEALGRAGMFEEVLE 204 (373)
Q Consensus 142 ---g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~------g~~p~~-------~~~~~li~~~~~~g~~~~A~~ 204 (373)
+-.|+ ..++..+...+...|++++|...++++.+.. ...+.. ..+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 22332 4578888999999999999999999986531 112211 222233334444556666666
Q ss_pred HHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 205 FIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 205 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.+.......| ...+|..+...|.+.|++++|...+++..++.|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7776444344 4578999999999999999999999999886653
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.7e-12 Score=110.91 Aligned_cols=191 Identities=9% Similarity=-0.027 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C----C----hhHH
Q 047393 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--K----N----SLSW 115 (373)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----d----~~~~ 115 (373)
...+..+...+...|++++|...++...+.. .+..++..+...|.+.|++++|.+.|++..+ | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567778888999999999999999998887 7889999999999999999999999987763 1 1 5788
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh
Q 047393 116 TFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195 (373)
Q Consensus 116 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 195 (373)
..+...+...|++++|.+.|++..+. .|+. ..+.+.|++++|...++.+... .+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 99999999999999999999999886 4553 3466778999999999998653 23356788899999999
Q ss_pred cCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 196 AGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.|++++|.+.|++++...| ++.+|..+...+...|++++|...++++.+..|+.
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 9999999999999777555 68899999999999999999999999999988876
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=1.8e-11 Score=106.99 Aligned_cols=215 Identities=10% Similarity=-0.103 Sum_probs=170.4
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID--SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
+..+|..+...|...|++++|++.|++..+.+-.|+ ..+|..+...+...|++++|...++...+.. +.+..++..+
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 455888899999999999999999999988432222 2348889999999999999999999998865 4567899999
Q ss_pred HHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--
Q 047393 88 ININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL-- 162 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-- 162 (373)
...|.+.|++++|.+.|++..+ .+..+|..+...+...+++++|.+.|++..+.. +.+...+..+...+...|+
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~ 193 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDT 193 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcch
Confidence 9999999999999999998874 356777777734444569999999999998873 3347788888888888888
Q ss_pred -HHHHHHHHHHhHHHcCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 047393 163 -VGEAYRLFLSMEEVYHIEPSE------EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSS 226 (373)
Q Consensus 163 -~~~a~~~~~~m~~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~ 226 (373)
.++|...+++..+...-.|+. ..|..+...|.+.|++++|.+.|++++...|+ +..+..+-...
T Consensus 194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 888999998887654333542 57788899999999999999999998877774 55555544443
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=8.2e-12 Score=118.99 Aligned_cols=209 Identities=11% Similarity=-0.031 Sum_probs=166.6
Q ss_pred HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHc
Q 047393 27 YEMVHELLERIQLCCGFIDSYSICDILNSCLNPILL-NVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFK 105 (373)
Q Consensus 27 ~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 105 (373)
++++++.+++.... .+.+...+..+..++...|++ ++|.+.|++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666655442 223667788888888999999 99999999988765 4457888889999999999999999998
Q ss_pred cCC--CCChhHHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCHHHH
Q 047393 106 STP--EKNSLSWTFIISARVNH---------GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM--------GLVGEA 166 (373)
Q Consensus 106 ~m~--~~d~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~~a 166 (373)
+.. .|+..+|..+...|... |++++|.+.|++..+.. +-+...|..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 765 46677888888888888 99999999999988764 34577888888888888 889999
Q ss_pred HHHHHHhHHHcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047393 167 YRLFLSMEEVYHIEP----SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (373)
...|++..+. .| +...|..+..+|.+.|++++|.+.|++++...| +...+..+...+...|+.++|.+.+.+
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988664 44 678888889999999999999999998777666 466788888888888888888875543
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2.8e-11 Score=98.74 Aligned_cols=166 Identities=16% Similarity=0.052 Sum_probs=144.8
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 157 (373)
...+..+...+.+.|++++|.+.|+++.+ .+..++..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788889999999999999998874 367888999999999999999999999998773 45678889999999
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 236 (373)
...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++++...| ++..+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997652 45778888999999999999999999999776555 6789999999999999999999
Q ss_pred HHHHHHhccCCCC
Q 047393 237 YALDKLLELDPGM 249 (373)
Q Consensus 237 ~~~~~m~~~~P~~ 249 (373)
..++++.+..|++
T Consensus 165 ~~~~~~~~~~~~~ 177 (186)
T 3as5_A 165 PHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999877665
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=3.1e-11 Score=99.24 Aligned_cols=160 Identities=11% Similarity=-0.011 Sum_probs=87.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
+...|..+-..|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 4556777777777777777777777776653 34 34456666666666666666666666665543 23344455555
Q ss_pred HHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
..+...++++.|.+.+++.. ..+..++..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555554432 1234444455555555555555555555544432 2234444444445555555555
Q ss_pred HHHHHHHh
Q 047393 166 AYRLFLSM 173 (373)
Q Consensus 166 a~~~~~~m 173 (373)
|...|++.
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=1.7e-11 Score=113.33 Aligned_cols=236 Identities=14% Similarity=-0.006 Sum_probs=185.8
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCC
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-----SYSICDILNSCLNPILLNVGTQAQAYMTKR----GLI 78 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~ 78 (373)
++....+......+...|++++|...|++..+.+ |+ ...+..+...+...|++++|...+++..+. +-.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 4566777888889999999999999999998863 43 356788888999999999999999987543 222
Q ss_pred C-chhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhCCC--------------------h
Q 047393 79 S-HPAVGNCLININSRCGKIDDADLAFKSTPE-----KN----SLSWTFIISARVNHGH--------------------P 128 (373)
Q Consensus 79 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d----~~~~~~li~~~~~~g~--------------------~ 128 (373)
| ...++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2 255788888999999999999999887652 22 4578888999999999 9
Q ss_pred HHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC----HhHHHHHHHHHHhcCCH
Q 047393 129 SEALDLFKDKQWR----YTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS----EEHYSIMVEALGRAGMF 199 (373)
Q Consensus 129 ~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~ 199 (373)
++|.+.+++..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999998886542 2111 2357788888999999999999999988654221222 34788889999999999
Q ss_pred HHHHHHHHhhCCCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 200 EEVLEFIKGIVPGKL---C----PLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 200 ~~A~~~~~~~~~~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
++|...+++++...| + ..++..+...+...|++++|...+++..++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999998664221 2 468889999999999999999999998874
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.32 E-value=6.2e-10 Score=97.52 Aligned_cols=192 Identities=9% Similarity=-0.064 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHHHHHHccCCC-CChhHHHHHH
Q 047393 45 DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSR----CGKIDDADLAFKSTPE-KNSLSWTFII 119 (373)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li 119 (373)
+..++..+...+...|++++|.+.|+...+. -+...+..+...|.+ .+++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567777888888999999999999999883 356778888899999 9999999999987653 4788899999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 120 SARVN----HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL----MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 120 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
..|.. .+++++|.+.|++..+.+ +..++..+-..|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999998875 78889999999998 99999999999999664 3 5667788888
Q ss_pred HHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 047393 192 ALGR----AGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV----HGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 192 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~P 247 (373)
.|.. .++.++|.+.|+++... .++..+..+...|.. .+++++|...+++..+.+|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 8888 99999999999997663 467888889999999 9999999999999988654
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.5e-10 Score=103.69 Aligned_cols=202 Identities=12% Similarity=0.045 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHH-------HcCCH-------hHHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 047393 10 VEIPWNLLLKACI-------KAKDY-------EMVHELLERIQLCCGFID-SYSICDILNSCLNPILLNVGTQAQAYMTK 74 (373)
Q Consensus 10 ~~~~~n~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 74 (373)
+...|..+...+. +.|++ ++|..+|++..+. +.|+ ...|..+...+.+.|++++|..+|++.++
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5567877777765 35886 8999999999873 3464 45788999999999999999999999987
Q ss_pred cCCCCc-hh-HHHHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCHH
Q 047393 75 RGLISH-PA-VGNCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIISAR-VNHGHPSEALDLFKDKQWRYTSMNPT 148 (373)
Q Consensus 75 ~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~ 148 (373)
. .|+ .. +|..+...+.+.|++++|..+|++..+ | +...|....... ...|++++|..+|++..+.. +-+..
T Consensus 128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 204 (308)
T 2ond_A 128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 204 (308)
T ss_dssp S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 4 454 43 899999999999999999999998764 2 344454333332 23799999999999988763 34678
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP--SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.|..++..+.+.|++++|..+|++......++| ....|..++..+.+.|+.++|..++++++...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 899999999999999999999999976423465 4678899999999999999999999997765564
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=4e-11 Score=107.33 Aligned_cols=233 Identities=14% Similarity=-0.002 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCC-c
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-----SYSICDILNSCLNPILLNVGTQAQAYMTKR----GLIS-H 80 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~-~ 80 (373)
...+......+...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.++...+. +-.| .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3455666778889999999999999998853 43 356788888999999999999999886543 2222 2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhCCC--------------------hHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPE-----KN----SLSWTFIISARVNHGH--------------------PSEA 131 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A 131 (373)
..++..+...|...|++++|...|++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56788889999999999999999887542 22 4478888899999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC----HhHHHHHHHHHHhcCCHHHH
Q 047393 132 LDLFKDKQWR----YTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS----EEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 132 ~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A 202 (373)
.+.+++..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998886532 2111 2347778888899999999999999987643211122 34788888999999999999
Q ss_pred HHHHHhhCCCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 203 LEFIKGIVPGK---LC----PLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 203 ~~~~~~~~~~~---p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
.+.+++++... ++ ..++..+...+...|++++|...+++..+.
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999865422 12 568888899999999999999999998874
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.31 E-value=6.8e-11 Score=109.14 Aligned_cols=198 Identities=9% Similarity=-0.034 Sum_probs=171.5
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC-HHHHHHHHccCCC---CChhHHHHHHHHH
Q 047393 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK-IDDADLAFKSTPE---KNSLSWTFIISAR 122 (373)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~---~d~~~~~~li~~~ 122 (373)
..|..+..++.+.|++++|...++..++.. +-+..+|+.+..+|.+.|+ +++|+..|++..+ .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467778888889999999999999998875 4568899999999999997 9999999998763 4788999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh-cCCHHH
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR-AGMFEE 201 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~~ 201 (373)
...|++++|+..|+++.+.. +-+...|..+-.++.+.|++++|...++++.+.. +-+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999874 4478899999999999999999999999997752 3367899999999999 677677
Q ss_pred H-----HHHHHhhCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCC
Q 047393 202 V-----LEFIKGIVPGKL-CPLIWRTLLLSSRVHG--DMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 202 A-----~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~P~~ 249 (373)
| ++.|++++...| +...|+.+...+...| +.++|.+.+.++ +.+|+.
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC
Confidence 7 588888787777 5789999999998888 689999999988 888877
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.31 E-value=2e-11 Score=113.49 Aligned_cols=232 Identities=11% Similarity=-0.009 Sum_probs=181.8
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-H----HHHHHHHHHHcCCCchHHHHHHHHHHHHc----CC-CCch
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-S----YSICDILNSCLNPILLNVGTQAQAYMTKR----GL-ISHP 81 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~ 81 (373)
..+..+...+...|++++|++.|++..+. .|+ . ..+..+...+...|++++|...+++..+. +- +...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 44556677889999999999999999885 343 2 46788888899999999999999987653 21 2335
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCCC---------ChhHHHHHHHHHHhCCC-----------------hHHHHHHH
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTPEK---------NSLSWTFIISARVNHGH-----------------PSEALDLF 135 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------d~~~~~~li~~~~~~g~-----------------~~~A~~l~ 135 (373)
.++..+...|...|++++|...|++..+- ...++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999876421 35578888999999999 99999998
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHH
Q 047393 136 KDKQWR----YTSM-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS----EEHYSIMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 136 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 206 (373)
++..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 886542 2112 2347788888999999999999999988654211112 237888899999999999999999
Q ss_pred HhhCCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 207 KGIVPGKL-------CPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 207 ~~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
++++...| ...++..+...+...|++++|...+++..+.
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88665222 1478888999999999999999999998874
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=1.4e-11 Score=114.51 Aligned_cols=235 Identities=10% Similarity=-0.028 Sum_probs=184.2
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CC-CCch
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLC----CGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKR----GL-ISHP 81 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~ 81 (373)
.+|..+...|...|++++|++.|++..+. +-.| ...++..+...+...|++++|...+++..+. +- +...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 57889999999999999999999987653 2122 3456888888999999999999999987654 21 2235
Q ss_pred hHHHHHHHHhHhcCC-----------------HHHHHHHHccCCC-----C----ChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 82 AVGNCLININSRCGK-----------------IDDADLAFKSTPE-----K----NSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 82 ~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
.++..+...|...|+ +++|.+.+++..+ . ...+|..+...|...|++++|.+.+
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 578888999999999 9999988876532 1 2457888899999999999999999
Q ss_pred HHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC----CHhHHHHHHHHHHhcCCHHHHHHHH
Q 047393 136 KDKQWRYT-SMN----PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP----SEEHYSIMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 136 ~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~ 206 (373)
++..+... .++ ..++..+...|...|++++|...+++......-.. ...++..+...|...|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98865311 112 23788888999999999999999998765421111 2567888899999999999999999
Q ss_pred HhhCCCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 047393 207 KGIVPGKL---C----PLIWRTLLLSSRVHGDMKLAKYALDKLLELD 246 (373)
Q Consensus 207 ~~~~~~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 246 (373)
++++...+ + ..++..+...|...|++++|...+++..++.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 98665221 1 3588889999999999999999999998853
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=6.7e-11 Score=112.67 Aligned_cols=183 Identities=10% Similarity=-0.003 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH-HHHHHHHccCC--C-CChhHHHHHHHHHHhCCChHHHHHHHHH
Q 047393 62 LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI-DDADLAFKSTP--E-KNSLSWTFIISARVNHGHPSEALDLFKD 137 (373)
Q Consensus 62 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~ 137 (373)
++++.+.++...+.. +.+...+..+...|...|++ ++|++.|++.. . .+..+|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666776655433 45788899999999999999 99999998875 2 3688999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc--------CCHH
Q 047393 138 KQWRYTSMNPTTFRSALKAYALM---------GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA--------GMFE 200 (373)
Q Consensus 138 m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--------g~~~ 200 (373)
..+. .|+..++..+...+... |++++|...+++..+.. +-+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9886 57888999999999999 99999999999997652 34678899999999998 9999
Q ss_pred HHHHHHHhhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 201 EVLEFIKGIVPGKL----CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 201 ~A~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+|.+.|++++...| ++..|..+..+|...|++++|...|++..+++|+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999887677 78899999999999999999999999999999877
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.27 E-value=2.4e-11 Score=108.78 Aligned_cols=237 Identities=10% Similarity=-0.005 Sum_probs=182.0
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-CCc----
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLC----CGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISH---- 80 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~---- 80 (373)
..+|..+...|...|++++|.+.+++.... +-.| ...++..+...+...|++++|...+++..+..- .++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 467889999999999999999999987542 2222 245678888899999999999999998755311 011
Q ss_pred hhHHHHHHHHhHhcCC--------------------HHHHHHHHccCCC-----C----ChhHHHHHHHHHHhCCChHHH
Q 047393 81 PAVGNCLININSRCGK--------------------IDDADLAFKSTPE-----K----NSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~-----~----d~~~~~~li~~~~~~g~~~~A 131 (373)
..++..+...|...|+ +++|.+.+++..+ + ...++..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3478888899999999 9999988876532 1 245788888999999999999
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC----HhHHHHHHHHHHhcCCHHHH
Q 047393 132 LDLFKDKQWRYT-SMN----PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS----EEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 132 ~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A 202 (373)
.+.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 999998764310 112 337888888999999999999999987643211122 56778888999999999999
Q ss_pred HHHHHhhCCCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 203 LEFIKGIVPGKL---C----PLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 203 ~~~~~~~~~~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
.+.+++++...+ + ..++..+...+...|++++|...+++..++.+
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 999998655221 2 35788899999999999999999999988543
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=2.5e-10 Score=97.19 Aligned_cols=195 Identities=11% Similarity=0.010 Sum_probs=133.8
Q ss_pred CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHH
Q 047393 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--K-NSLSWTFIIS 120 (373)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~ 120 (373)
.|+..+......+.+.|++++|...|+..++..-+++...+..+..+|.+.|++++|.+.|++..+ | +..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355677777788888888888888888887776436666766688888888888888888876542 2 4667777888
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC---HhHHHHHH
Q 047393 121 ARVNHGHPSEALDLFKDKQWRYTSMNP-------TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS---EEHYSIMV 190 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li 190 (373)
.|...|++++|.+.+++..+.. +.+. ..|..+-..+...|++++|...|++..+ +.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 8888888888888888877653 2233 3466666777778888888888887743 3554 45666666
Q ss_pred HHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 191 EALGRAGMFEEVLEFIKGIVPG-KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..|...|+. +++++... ..+...|.... ....+.+++|...+++..+++|++
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC
Confidence 666554432 23332221 22344444333 233456799999999999998876
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=3.5e-10 Score=104.34 Aligned_cols=228 Identities=7% Similarity=-0.078 Sum_probs=177.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--C---C-CchhHHH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLC----CGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRG--L---I-SHPAVGN 85 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~---~-~~~~~~~ 85 (373)
....+...|++++|++.|++..+. +-.+ ...++..+...+...|++++|...+.+..+.- . . ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567899999999999998763 1112 23578888899999999999999999876531 1 1 1245788
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CC-CCCHHHHH
Q 047393 86 CLININSRCGKIDDADLAFKSTPE-----KN----SLSWTFIISARVNHGHPSEALDLFKDKQWR----YT-SMNPTTFR 151 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~ 151 (373)
.+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999986652 22 357888999999999999999999998762 33 33467888
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHc---CCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHhhCCCCCC-HHHHHHHHH
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVY---HIEPSEEHYSIMVEALGRAGM---FEEVLEFIKGIVPGKLC-PLIWRTLLL 224 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~li~ 224 (373)
.+...+.+.|++++|...+++..+.. +-+.....+..+...|...|+ .++|..++++ ....|+ ...+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-KMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 99999999999999999999876432 111223345677788888898 9999999999 553443 357788889
Q ss_pred HHHHcCCHHHHHHHHHHHhcc
Q 047393 225 SSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 225 ~~~~~g~~~~A~~~~~~m~~~ 245 (373)
.|...|++++|...+++..++
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998873
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=4.5e-10 Score=91.43 Aligned_cols=163 Identities=19% Similarity=0.040 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3557778888889999999999998887542 2356677888888888889999998888887764 4456677777777
Q ss_pred hHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047393 91 NSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY 167 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 167 (373)
|.+.|++++|.+.|++.. ..+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777788888877777654 2356666777777777777777777777776653 335566677777777777777777
Q ss_pred HHHHHhHHH
Q 047393 168 RLFLSMEEV 176 (373)
Q Consensus 168 ~~~~~m~~~ 176 (373)
..++...+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777766443
No 63
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=3.1e-10 Score=100.84 Aligned_cols=207 Identities=11% Similarity=-0.042 Sum_probs=149.8
Q ss_pred CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHhHhcCCHHHH
Q 047393 26 DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR----GLISH-PAVGNCLININSRCGKIDDA 100 (373)
Q Consensus 26 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A 100 (373)
++++|.+.|++. ...+...|++++|...|.+..+. |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 34566778899998888877543 32222 46888888999999999999
Q ss_pred HHHHccCCC-----CC----hhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHH
Q 047393 101 DLAFKSTPE-----KN----SLSWTFIISARVNH-GHPSEALDLFKDKQWRYTS-MN----PTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 101 ~~~~~~m~~-----~d----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~ 165 (373)
...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ ..+++.+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888876542 12 45788899999996 9999999999998654211 11 3578888999999999999
Q ss_pred HHHHHHHhHHHcCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHH------HHHHHHHHHH--HcCCH
Q 047393 166 AYRLFLSMEEVYHIEPSE-----EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL------IWRTLLLSSR--VHGDM 232 (373)
Q Consensus 166 a~~~~~~m~~~~g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~li~~~~--~~g~~ 232 (373)
|...|++..+...-.+.. ..+..+..++...|++++|...|++++.+.|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999986542111221 1567788889999999999999999887777532 3455566664 45679
Q ss_pred HHHHHHHHHHhccCC
Q 047393 233 KLAKYALDKLLELDP 247 (373)
Q Consensus 233 ~~A~~~~~~m~~~~P 247 (373)
++|...|+.+..++|
T Consensus 257 ~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHTTSSCCCH
T ss_pred HHHHHHhccCCccHH
Confidence 999999988877765
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=1e-10 Score=116.36 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=128.0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047393 80 HPAVGNCLININSRCGKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA 156 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 156 (373)
+..+++.|...|.+.|++++|++.|++.. .| +..+|+.+...|.+.|++++|++.|++..+.. +-+..+|..+-.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 35677777777777888888887777654 23 56778888888888888888888888877763 2346788888888
Q ss_pred HHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 047393 157 YALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 157 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 234 (373)
+.+.|++++|.+.|++..+. .| +...|+.+..+|.+.|++++|.+.|+++++..| +...|..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888887654 44 567888888888888888888888888777777 46788888888888898888
Q ss_pred HHHHHHHHhccCC
Q 047393 235 AKYALDKLLELDP 247 (373)
Q Consensus 235 A~~~~~~m~~~~P 247 (373)
|.+.++++.++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 8888888776443
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.21 E-value=8.3e-11 Score=108.61 Aligned_cols=235 Identities=10% Similarity=-0.026 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCC-c
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLC----CGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKR----GLIS-H 80 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~-~ 80 (373)
..+|..+...|...|++++|.+.|++.... +-.|. ..++..+...+...|++++|...++...+. +-.+ .
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 357888999999999999999999987542 22222 456778888999999999999999987653 1111 1
Q ss_pred hhHHHHHHHHhHhcCC--------------------HHHHHHHHccCCC-----C----ChhHHHHHHHHHHhCCChHHH
Q 047393 81 PAVGNCLININSRCGK--------------------IDDADLAFKSTPE-----K----NSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~-----~----d~~~~~~li~~~~~~g~~~~A 131 (373)
..++..+...|...|+ +++|.+.+++..+ + ...+|..+...|...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 4478888899999999 9999888875431 1 245788889999999999999
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC----HhHHHHHHHHHHhcCCHHHH
Q 047393 132 LDLFKDKQWRYT-SMN----PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS----EEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 132 ~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A 202 (373)
.+.+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 999998865310 122 247888889999999999999999987643211112 56788889999999999999
Q ss_pred HHHHHhhCCC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 203 LEFIKGIVPG---KLC----PLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 203 ~~~~~~~~~~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
.+.+++++.. .++ ..++..+...|...|++++|...+++..++
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999986552 122 568888999999999999999999998874
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=1.1e-09 Score=105.63 Aligned_cols=233 Identities=10% Similarity=-0.013 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHHc----CCH----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC-------CCchH-------HHHHHH
Q 047393 12 IPWNLLLKACIKA----KDY----EMVHELLERIQLCCGFIDSYSICDILNSCLN-------PILLN-------VGTQAQ 69 (373)
Q Consensus 12 ~~~n~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~ 69 (373)
..|...+...... ++. .+|..+|++.... .+-+...|......+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 5676666543332 222 4778889988874 22356677777777664 78887 899999
Q ss_pred HHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-Ch-hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 047393 70 AYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--K-NS-LSWTFIISARVNHGHPSEALDLFKDKQWRYTSM 145 (373)
Q Consensus 70 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 145 (373)
++.++.-.+.+...|..++..+.+.|++++|.++|++..+ | +. ..|..++..+.+.|++++|.++|++..+.. +.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~ 388 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RT 388 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 9987632345688999999999999999999999998753 4 33 489999999999999999999999998763 22
Q ss_pred CHHHHHHHHHH-HHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-C----HHHH
Q 047393 146 NPTTFRSALKA-YALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-C----PLIW 219 (373)
Q Consensus 146 ~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~----~~~~ 219 (373)
+...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++++...| + ...|
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 23333322222 346899999999999987763 34678999999999999999999999999765433 2 3589
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 220 RTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 220 ~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
...+......|+.+.+..+++++.+..|+
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999999999999999987663
No 67
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.19 E-value=2.5e-08 Score=95.19 Aligned_cols=225 Identities=12% Similarity=-0.095 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCCch
Q 047393 10 VEIPWNLLLKACIK----AKDYEMVHELLERIQLCCGFIDSYSICDILNSCLN----PILLNVGTQAQAYMTKRGLISHP 81 (373)
Q Consensus 10 ~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~ 81 (373)
|..++..+-..|.. .+++++|.+.|++..+.| +...+..|-..+.. .++.++|.+.|+...+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44445555555555 555555555555555432 23344444444444 455555555555554443 33
Q ss_pred hHHHHHHHHhHh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCC---------
Q 047393 82 AVGNCLININSR----CGKIDDADLAFKSTPE-KNSLSWTFIISARVN----HGHPSEALDLFKDKQWRYT--------- 143 (373)
Q Consensus 82 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~--------- 143 (373)
..+..|...|.. .+++++|.+.|++..+ .+..++..|...|.. .+++++|.+.|++..+.|.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444 4455555555544332 233344444444443 3444444444444444320
Q ss_pred ------------------------CCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh
Q 047393 144 ------------------------SMNPTTFRSALKAYAL----MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR 195 (373)
Q Consensus 144 ------------------------~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 195 (373)
..+..++..+...|.. .++.++|..+|+...+. .+...+..+-..|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHC
Confidence 0133334444444433 44555555555544321 123333444444444
Q ss_pred ----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcc
Q 047393 196 ----AGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVH-----GDMKLAKYALDKLLEL 245 (373)
Q Consensus 196 ----~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~ 245 (373)
.++.++|.+.|+++.+ .-++..+..+...|... ++.++|...+++..+.
T Consensus 268 g~~~~~d~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAE-QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 4555555555555433 23444444555555544 5555555555555543
No 68
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=4.4e-09 Score=99.47 Aligned_cols=202 Identities=12% Similarity=-0.046 Sum_probs=124.7
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-----C--CCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-----C
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLC-----C--GFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKR-----G 76 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g 76 (373)
....||.+-..+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...++...+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999887542 1 233 3467899999999999999999999887542 1
Q ss_pred -CC-CchhHHHHHHHHhHhc--CCHHHHHHHHccCC--CC-ChhHHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCC
Q 047393 77 -LI-SHPAVGNCLININSRC--GKIDDADLAFKSTP--EK-NSLSWTFIISA---RVNHGHPSEALDLFKDKQWRYTSMN 146 (373)
Q Consensus 77 -~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~--~~-d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~ 146 (373)
.. ....+++.+..++.+. +++++|.+.|++.. .| +...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 1245666555555554 46899999998764 23 34444444333 334566666777776665542 223
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 147 PTTFRSALKAYAL----MGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 147 ~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
..++..+...+.. .|+.++|.+++++..... +.+...+..+...|.+.|++++|.+.++++++..|
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 4444444333332 345556666666654431 33445556666666666666666666666544444
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=1.6e-09 Score=83.07 Aligned_cols=132 Identities=21% Similarity=0.239 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEAL 193 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 193 (373)
.|..+...+...|++++|..+++++.+.+ +.+..++..+...+...|++++|..+++++.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 56777888888899999999998887764 3467778888888888999999999999886542 44667788888889
Q ss_pred HhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 194 GRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
...|++++|.+.+++++...| +...+..+...+...|++++|...++++.+.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999988666444 5778888899999999999999999999887775
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.18 E-value=3.4e-08 Score=94.19 Aligned_cols=203 Identities=9% Similarity=-0.093 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHH
Q 047393 28 EMVHELLERIQLCCGFIDSYSICDILNSCLN----PILLNVGTQAQAYMTKRGLISHPAVGNCLININSR----CGKIDD 99 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 99 (373)
..+.+.+.+..+.| +...+..+-..+.. .+++++|...|+...+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34566666666543 66667777777766 899999999999998875 56778888888988 899999
Q ss_pred HHHHHccCCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHH
Q 047393 100 ADLAFKSTPE-KNSLSWTFIISARVN----HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL----MGLVGEAYRLF 170 (373)
Q Consensus 100 A~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~ 170 (373)
|.+.|++..+ .+...+..|...|.. .+++++|...|++..+.| +...+..+-..|.. .++.++|.+.|
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999987664 477888888888888 889999999999998876 56677777777766 67888888888
Q ss_pred HHhHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 047393 171 LSMEEVYHIEPSEEHYSIMVEALGR----AGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV----HGDMKLAKYALDKL 242 (373)
Q Consensus 171 ~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 242 (373)
++..+. .+...+..+...|.. .++.++|.+.|+++.. ..++..+..+...|.. .++.++|...|++.
T Consensus 175 ~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 175 SKAAEQ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHC----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 887543 255666666667766 6777777777776444 3345555555555554 55666666666665
Q ss_pred hc
Q 047393 243 LE 244 (373)
Q Consensus 243 ~~ 244 (373)
.+
T Consensus 250 ~~ 251 (490)
T 2xm6_A 250 AE 251 (490)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 71
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.16 E-value=8.4e-09 Score=106.27 Aligned_cols=210 Identities=11% Similarity=0.011 Sum_probs=157.4
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+..+|..+-.++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+...++.. ++....+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 4567888888888888888888888553 356677788888888888888888888776654 44334445888
Q ss_pred HhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRL 169 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 169 (373)
+|++.+++++..... ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.
T Consensus 1176 aYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 888888888655443 3456667777888888888888888888774 4788888888888888888888
Q ss_pred HHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 170 FLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 170 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+++. .+..+|..+-.+|...|++..|...... + ..++..+..++..|.+.|.+++|..+++..++++|.+
T Consensus 1244 arKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~-I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1244 ARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-I--VVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred HHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-h--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 8755 2456777777777777777777776654 3 2355566688888888888888888888888877766
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=2.1e-10 Score=100.17 Aligned_cols=224 Identities=12% Similarity=-0.055 Sum_probs=157.1
Q ss_pred HHcCCHhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc------CCCC-chhHHHHH
Q 047393 22 IKAKDYEMVHELLERIQLC-------CGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR------GLIS-HPAVGNCL 87 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~~~~~l 87 (373)
...|++++|+++|++..+. ..+....++..+...+...|++++|...+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 11223567888999999999999999999998765 2223 35688999
Q ss_pred HHHhHhcCCHHHHHHHHccCCC----------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCC-CHHH
Q 047393 88 ININSRCGKIDDADLAFKSTPE----------K-NSLSWTFIISARVNHGHPSEALDLFKDKQWR------YTSM-NPTT 149 (373)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t 149 (373)
...|...|++++|.+.|++..+ | ...+|..+...|...|++++|.+.+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999987642 1 3567888999999999999999999998765 2123 3567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHHc------CCCCC-HhHHHHHHHHHHhcC------CHHHHHHHHHhhCCCCC-C
Q 047393 150 FRSALKAYALMGLVGEAYRLFLSMEEVY------HIEPS-EEHYSIMVEALGRAG------MFEEVLEFIKGIVPGKL-C 215 (373)
Q Consensus 150 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~------g~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~~p-~ 215 (373)
+..+...|...|++++|..++++..+.. ...+. ...+..+...+...+ ...++...++......| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999999986531 11222 233333333333322 23444445555222223 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 216 PLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
..++..+...|...|++++|...+++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 468889999999999999999999998763
No 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=3e-08 Score=93.71 Aligned_cols=235 Identities=10% Similarity=-0.002 Sum_probs=130.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-----C-CCC-CHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCCCc
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLC-----C-GFI-DSYSICDILNSCL--NPILLNVGTQAQAYMTKRGLISH 80 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~~~ 80 (373)
..++|+.+...|...|++++|...+++..+. + ..+ ...++..+..++. ..+++++|.+.|++.++.. +-+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4678999999999999999999999887652 1 122 2345555444443 3467899999999987764 334
Q ss_pred hhHHHHHHHHh---HhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHH
Q 047393 81 PAVGNCLININ---SRCGKIDDADLAFKSTP---EKNSLSWTFIISARVN----HGHPSEALDLFKDKQWRYTSMNPTTF 150 (373)
Q Consensus 81 ~~~~~~li~~~---~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 150 (373)
...+..+..++ ...++.++|++.|++.. ..+..++..+...+.. .|++++|.+.+++..... +.+..++
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 55555554443 34455566666665432 2344455544444433 345666777776665543 3455566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc-------------------CCHHHHHHHHHhhCC
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA-------------------GMFEEVLEFIKGIVP 211 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~ 211 (373)
..+...|...|++++|...+++..+.. +-+..++..+...|... +..++|...|+++..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 666677777777777777777665431 22333444333333211 123344444444333
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 212 GKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 212 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
..| +..++..+...+...|++++|...|++.++++|+
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 233 2334445555555555555555555555554443
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=4.8e-09 Score=96.59 Aligned_cols=226 Identities=9% Similarity=-0.024 Sum_probs=174.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcC-CCCC----HHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-----CCC-chhHHHH
Q 047393 18 LKACIKAKDYEMVHELLERIQLCC-GFID----SYSICDILNSCLNPILLNVGTQAQAYMTKRG-----LIS-HPAVGNC 86 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~~-~~~~~~~ 86 (373)
-..+...|++++|++.|++..+.- -.+| ..++..+...+...|+++.|...+.+..+.. ..+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 344578999999999999987631 1123 3567888889999999999999999876531 111 2457888
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC-----C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 047393 87 LININSRCGKIDDADLAFKSTPE-----K----NSLSWTFIISARVNHGHPSEALDLFKDKQWR----YTSMNPTTFRSA 153 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~-----~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~l 153 (373)
+...|...|++++|.+.|++..+ + ...+++.+...|...|++++|.+.+++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 99999999999999999876542 1 2457888999999999999999999998761 223346788889
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCC--C-CHhHHHHHHHHHHhcCC---HHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIE--P-SEEHYSIMVEALGRAGM---FEEVLEFIKGIVPGKLC-PLIWRTLLLSS 226 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~li~~~ 226 (373)
...+.+.|++++|...+++..+...-. | ....+..+-..|...|+ +.+|..++++ ....|+ ...+..+...|
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHH
Confidence 999999999999999999987653221 1 23455666667777788 8999999998 553443 35677888999
Q ss_pred HHcCCHHHHHHHHHHHhc
Q 047393 227 RVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~ 244 (373)
...|++++|...|++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999998876
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=1.6e-09 Score=107.94 Aligned_cols=162 Identities=8% Similarity=-0.022 Sum_probs=129.8
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
+..+|+.+-..|.+.|++++|++.|++..+. .|+ ..++..+..++.+.|++++|.+.|++.++.. +-+...|+.+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3567888888999999999999999988874 454 5678888888888999999999998887764 34577888888
Q ss_pred HHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047393 89 NINSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE 165 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 165 (373)
.+|.+.|++++|++.|++.. ..+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+...+...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888764 2367788888888888888888888888887763 3356788888888888888888
Q ss_pred HHHHHHHhHH
Q 047393 166 AYRLFLSMEE 175 (373)
Q Consensus 166 a~~~~~~m~~ 175 (373)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777643
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=3.1e-08 Score=90.71 Aligned_cols=231 Identities=10% Similarity=-0.038 Sum_probs=166.2
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHcCCCchHHHHHHHHHHHHcCC---CCc--hhHHH
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSY----SICDILNSCLNPILLNVGTQAQAYMTKRGL---ISH--PAVGN 85 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~~~~~ 85 (373)
......+...|++++|.+.+++.....-..+.. +++.+...+...|++++|...+++..+..- .+. ..+++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455678999999999999987753222222 455666777888999999999998765311 111 23456
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCC----------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHHHH
Q 047393 86 CLININSRCGKIDDADLAFKSTPE----------K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS--M--NPTTF 150 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~ 150 (373)
.+...+...|++++|...+++..+ + ...++..+...+...|++++|...+++..+..-. + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 777889999999999998876541 2 2345667888899999999999999998764321 1 24577
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHH-----HHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHH
Q 047393 151 RSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYS-----IMVEALGRAGMFEEVLEFIKGIVPGKLC-----PLIWR 220 (373)
Q Consensus 151 ~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~ 220 (373)
..+...+...|++++|...+++......-......+. ..+..+...|+.++|...++++....|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888889999999999999998865422111111222 2334577899999999999996654332 33567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 221 TLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 221 ~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
.+...+...|++++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999999998763
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=5.9e-10 Score=97.25 Aligned_cols=199 Identities=12% Similarity=0.041 Sum_probs=141.9
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHc------C
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLC------CGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKR------G 76 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g 76 (373)
...+|+.+...|...|++++|++.|++..+. +-.| ...++..+...+...|++++|...+.+..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4577899999999999999999999998764 2233 3457888999999999999999999998765 1
Q ss_pred C-CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-------C----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---
Q 047393 77 L-ISHPAVGNCLININSRCGKIDDADLAFKSTPE-------K----NSLSWTFIISARVNHGHPSEALDLFKDKQWR--- 141 (373)
Q Consensus 77 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 141 (373)
- +....++..+...|...|++++|...|++..+ + ...++..+...|...|++++|.+.+++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 23467888999999999999999999986642 1 3567888999999999999999999998763
Q ss_pred ----CCCCCH-HHHHHHHHHHHccC------CHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 047393 142 ----YTSMNP-TTFRSALKAYALMG------LVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGI 209 (373)
Q Consensus 142 ----g~~p~~-~t~~~ll~~~~~~g------~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (373)
...+.. ..+..+...+...+ .+..+...++... ...| ...++..+...|.+.|++++|.++|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122222 23333333333222 2333333333221 1122 3467888999999999999999999986
Q ss_pred CC
Q 047393 210 VP 211 (373)
Q Consensus 210 ~~ 211 (373)
++
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=9.8e-09 Score=87.22 Aligned_cols=197 Identities=9% Similarity=-0.026 Sum_probs=151.9
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.|...|......+...|++++|++.|++..+..-.++...+..+..++...|++++|.+.++...+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999986543677777778899999999999999999998765 44678899999
Q ss_pred HHhHhcCCHHHHHHHHccCCC--C-Ch-------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPE--K-NS-------LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN---PTTFRSALK 155 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~--~-d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~ 155 (373)
..|.+.|++++|.+.|++..+ | +. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999987753 3 44 45888888899999999999999999876 465 456666766
Q ss_pred HHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHH
Q 047393 156 AYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPL 217 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (373)
.|...| ...++.+... + ..+...|.... ....+.+++|...|+++++..|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHH-----HHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 665443 4445555222 1 23344444433 2345678999999999877777543
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=5.5e-09 Score=92.74 Aligned_cols=201 Identities=8% Similarity=-0.066 Sum_probs=151.6
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCC-ch
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLC----CGFID-SYSICDILNSCLNPILLNVGTQAQAYMTKR----GLIS-HP 81 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~ 81 (373)
..|+.....|...|++++|.+.|++.... |-.++ ..+|+.+..++.+.|++++|...++..++. |-.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999987653 32222 467899999999999999999999987653 2111 14
Q ss_pred hHHHHHHHHhHhc-CCHHHHHHHHccCCC--C---C----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----
Q 047393 82 AVGNCLININSRC-GKIDDADLAFKSTPE--K---N----SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP---- 147 (373)
Q Consensus 82 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~--~---d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---- 147 (373)
.+++.+...|.+. |++++|...|++..+ | + ..+|+.+...+.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 999999999987652 1 1 356888999999999999999999999876433222
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCH------hHHHHHHHHHH--hcCCHHHHHHHHHhhCCCCCC
Q 047393 148 --TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSE------EHYSIMVEALG--RAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 148 --~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.+|..+..++...|++++|...|++..+ +.|+. ..+..++.++. ..+++++|...|+++....|.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2577788888999999999999998743 34532 23445566665 457899999999985555553
No 80
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=3.8e-09 Score=93.37 Aligned_cols=177 Identities=10% Similarity=0.071 Sum_probs=135.8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047393 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE-----KNSLSWTFIISARVNHGHPSEALDLFKDKQ 139 (373)
Q Consensus 65 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 139 (373)
|...+++..+.+ .++..+...+..++...|++++|++++.+... .+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666555 45666666888899999999999999988743 256677888999999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--ccC--CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 047393 140 WRYTSM-----NPTTFRSALKAYA--LMG--LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 140 ~~g~~p-----~~~t~~~ll~~~~--~~g--~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (373)
+. .| +..+...+..++. ..| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 56 3666667766633 234 899999999999654 4654444455558899999999999998744
Q ss_pred CC----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 211 PG----------KL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 211 ~~----------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+. .| ++.+...+|......|+ +|.++++++.+..|++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 42 24 56777566666666787 8999999999999988
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.9e-08 Score=87.37 Aligned_cols=166 Identities=13% Similarity=-0.010 Sum_probs=99.2
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCC--C-C---hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC-HHHHHHH
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTPE--K-N---SLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SMN-PTTFRSA 153 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~l 153 (373)
..+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|...|++..+... .|. ...+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3333444444555555555555554432 1 1 33444455555555555555555555554421 111 2334444
Q ss_pred HHHHHc--------cCCHHHHHHHHHHhHHHcCCCCCHhH-----------------HHHHHHHHHhcCCHHHHHHHHHh
Q 047393 154 LKAYAL--------MGLVGEAYRLFLSMEEVYHIEPSEEH-----------------YSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 154 l~~~~~--------~g~~~~a~~~~~~m~~~~g~~p~~~~-----------------~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
..++.. .|++++|...|++..+.+ +-+... +..+...|.+.|++++|...|++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444 555666666665554442 111122 24567888899999999999999
Q ss_pred hCCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCC
Q 047393 209 IVPGKLC----PLIWRTLLLSSRVH----------GDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 209 ~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~P~~ 249 (373)
++...|+ +..+..+..+|... |++++|...++++.+..|++
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 7665564 45777888888766 89999999999999988876
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=5.9e-09 Score=79.79 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=70.1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047393 84 GNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 160 (373)
|..+...|.+.|++++|.++|+++. ..+..+|..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 4444555555555555555555443 1244455555555666666666666666655543 33455555666666666
Q ss_pred CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 161 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
|++++|..+++++.+.. +.+...+..+...+.+.|+.++|.+.+++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666664431 23455556666666666666666666665433
No 83
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.99 E-value=1.8e-08 Score=97.13 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=157.4
Q ss_pred ChhHHHHHHHHHHH-------cCCHh-------HHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 047393 10 VEIPWNLLLKACIK-------AKDYE-------MVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTK 74 (373)
Q Consensus 10 ~~~~~n~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 74 (373)
+...|......+.+ .|+++ +|.++|++..+. +.| +...+..+...+.+.|++++|..+|+.+++
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 45677777777775 69987 899999998863 345 567788899999999999999999999988
Q ss_pred cCCCCc--hhHHHHHHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHH-HHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 047393 75 RGLISH--PAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIIS-ARVNHGHPSEALDLFKDKQWRYTSMNPT 148 (373)
Q Consensus 75 ~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 148 (373)
. .|+ ..+|...+..+.+.|++++|.++|++..+. +...|..... .+...|++++|..+|++..+.. +-+..
T Consensus 350 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~ 426 (530)
T 2ooe_A 350 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 426 (530)
T ss_dssp S--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred c--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHH
Confidence 5 454 358999999999999999999999877542 2223322221 2346899999999999988763 34678
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS--EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
.|..++..+.+.|+.++|..+|++........|+ ...|...+....+.|+.+.+..++.++++..|
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999765333443 45788888888889999999999998655344
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.98 E-value=2e-08 Score=91.96 Aligned_cols=232 Identities=11% Similarity=0.014 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCCH----HHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCC--C-c
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCG-FIDS----YSICDILNSCLNPILLNVGTQAQAYMTKR----GLI--S-H 80 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~ 80 (373)
+++.+...+...|++++|.+.+++.....- .++. .++..+...+...|++++|...+++..+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 567777888899999999999998765210 1122 33566777888999999999999987653 222 3 2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC--C------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPE--K------NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--PTTF 150 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~ 150 (373)
..++..+...|...|++++|...+++..+ + ...+|..+...+...|++++|...+++.....-.++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 45667788899999999999999976431 1 235677888889999999999999999865421211 1211
Q ss_pred H----HHHHHHHccCCHHHHHHHHHHhHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCC------CCH-
Q 047393 151 R----SALKAYALMGLVGEAYRLFLSMEEVYHIEP---SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK------LCP- 216 (373)
Q Consensus 151 ~----~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------p~~- 216 (373)
. ..+..+...|++++|...+++.... ...+ ....+..+...+...|+.++|...++++.... ++.
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 1 2334477899999999999987432 1111 12346677889999999999999998854411 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 217 LIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
..+..+..++...|+.++|...+++....
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36667778889999999999999998874
No 85
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.97 E-value=1.4e-07 Score=97.45 Aligned_cols=213 Identities=13% Similarity=0.048 Sum_probs=169.7
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.|...|..++.++.+.|++++|.+.|...++.. +++...+.+..+|++.+++++...+. + .++...|..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 567789999999999999999999998877643 44444445889999999988644442 2 45667777899
Q ss_pred HHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047393 89 NINSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 168 (373)
..|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. -+..+|..+-.+|...|++..|..
T Consensus 1203 d~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999985 59999999999999999999999876 377999999999999999999887
Q ss_pred HHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhcc
Q 047393 169 LFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHG--DMKLAKYALDKLLEL 245 (373)
Q Consensus 169 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 245 (373)
.... +..+...+..++..|.+.|.+++|..+++..+...| ....|+-|...|++.. +..++.+.|..-..+
T Consensus 1272 cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1272 CGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 6543 344666777999999999999999999999777665 4467777777776643 556666666655544
Q ss_pred CC
Q 047393 246 DP 247 (373)
Q Consensus 246 ~P 247 (373)
.|
T Consensus 1346 ~k 1347 (1630)
T 1xi4_A 1346 PK 1347 (1630)
T ss_pred ch
Confidence 33
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.96 E-value=5.7e-09 Score=92.43 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=101.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCC--------C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCC
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTPE--------K---NSLSWTFIISARVNHGHPSEALDLFKDKQWR------YTS 144 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 144 (373)
.++..+...|...|++++|...|++..+ . ...++..+...|...|++++|.+.+++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444555555555555555544332 1 2344555555666666666666666655432 111
Q ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHc-----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC-----
Q 047393 145 M-NPTTFRSALKAYALMGLVGEAYRLFLSMEEVY-----HIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPG----- 212 (373)
Q Consensus 145 p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 212 (373)
| ...++..+...+...|++++|..++++..+.. +-.| ....+..+...+...|++++|.++|++++..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 34566677777777777777777777765432 2222 3456677777788888888888888775542
Q ss_pred ---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 213 ---KL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 213 ---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
.| ...++..+...+...|++++|...++++.+.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23 2357778888888888888888888888763
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=3.3e-08 Score=98.30 Aligned_cols=170 Identities=8% Similarity=-0.084 Sum_probs=141.4
Q ss_pred cCCCchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhC
Q 047393 57 LNPILLNVGTQAQAYMT--------KRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNH 125 (373)
Q Consensus 57 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~ 125 (373)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999987 332 45677888899999999999999999998763 4778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047393 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEF 205 (373)
Q Consensus 126 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 205 (373)
|++++|.+.|++..+.. +-+...+..+-.++.+.|++++ ...|++..+.. +-+...|..+..+|.+.|+.++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998874 3356788899999999999999 99999987652 33678899999999999999999999
Q ss_pred HHhhCCCCCC-HHHHHHHHHHHHHcCC
Q 047393 206 IKGIVPGKLC-PLIWRTLLLSSRVHGD 231 (373)
Q Consensus 206 ~~~~~~~~p~-~~~~~~li~~~~~~g~ 231 (373)
|+++++..|+ ...|..+..++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9998888886 5678788888766555
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=3.6e-08 Score=82.77 Aligned_cols=177 Identities=10% Similarity=-0.037 Sum_probs=110.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCCh
Q 047393 50 CDILNSCLNPILLNVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHP 128 (373)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~ 128 (373)
......+.+.|++++|...|+..++.. |+ ...|... ...+. .......++.+...|.+.|++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCCH
Confidence 334445567777777777777776643 32 2222210 00000 000122233477778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC--HHHHHHHH
Q 047393 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM--FEEVLEFI 206 (373)
Q Consensus 129 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~ 206 (373)
++|+..|++..+.. +-+...+..+...+...|++++|...|++..+.. +-+...+..+...|...|. .+.+...+
T Consensus 71 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 71 DKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 88888888887763 3357778888888888888888888888886642 3356777777777765543 44566666
Q ss_pred HhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 207 KGIVPGKLCP--LIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 207 ~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.+.+ .|++ ..+..+..++...|++++|...|++.+++.|+
T Consensus 148 ~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 148 KKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp C-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6633 3443 33444555666778888888888888887774
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=1.2e-07 Score=83.94 Aligned_cols=158 Identities=8% Similarity=0.011 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CChhHHHH-HHHHHHhC
Q 047393 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--KNSLSWTF-IISARVNH 125 (373)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~-li~~~~~~ 125 (373)
+..+...+.+.|++++|...+++..+.. +-+...+..+...|.+.|++++|...|++... |+...... ....+.+.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 3344444444455555555555444432 22334444444445555555555555544432 22211111 11123333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047393 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEF 205 (373)
Q Consensus 126 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 205 (373)
++.++|...+++..+.. +.+...+..+...+...|++++|...|+++.+...-..+...+..+...|...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 44444444444444332 22334444444444444444444444444433310001133444444444444444444444
Q ss_pred HHh
Q 047393 206 IKG 208 (373)
Q Consensus 206 ~~~ 208 (373)
+++
T Consensus 278 ~r~ 280 (287)
T 3qou_A 278 YRR 280 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=9.1e-07 Score=78.64 Aligned_cols=223 Identities=11% Similarity=-0.053 Sum_probs=174.4
Q ss_pred HHHcCC-HhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHcCCC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHh----H
Q 047393 21 CIKAKD-YEMVHELLERIQLCCGFIDSY-SICDILNSCLNPI--LLNVGTQAQAYMTKRGLISHPAVGNCLININ----S 92 (373)
Q Consensus 21 ~~~~g~-~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~ 92 (373)
..+.|. .++|+++++++.. +.|+.. .|+.--.++...+ ++++++++++.++... +-+..+|+.--..+ .
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 42 LMKAEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 344555 4689999999998 457654 4777777777788 9999999999998875 45566676544444 4
Q ss_pred hc---CCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--
Q 047393 93 RC---GKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPS--EALDLFKDKQWRYTSMNPTTFRSALKAYALMGL-- 162 (373)
Q Consensus 93 ~~---g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-- 162 (373)
+. +++++++++++.+.+ .+..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.--....+.|.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 44 789999999998873 47778887777788889888 9999999999886 4477888877777777776
Q ss_pred ----HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHhhCCC----CCCHHHHHHHHHHHHHcCCHH
Q 047393 163 ----VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE-VLEFIKGIVPG----KLCPLIWRTLLLSSRVHGDMK 233 (373)
Q Consensus 163 ----~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~ 233 (373)
++++.+.++.+.... +-|...|+.+-..+.+.|+..+ +.++.++.... ..++..+..+...+.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 899999999987652 4578889888888888888544 55677774433 237789999999999999999
Q ss_pred HHHHHHHHHhc-cCCCC
Q 047393 234 LAKYALDKLLE-LDPGM 249 (373)
Q Consensus 234 ~A~~~~~~m~~-~~P~~ 249 (373)
+|.++++.+.+ .+|..
T Consensus 276 ~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhccChHH
Confidence 99999999996 78754
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=7.8e-08 Score=83.46 Aligned_cols=99 Identities=6% Similarity=-0.141 Sum_probs=73.4
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--CCch
Q 047393 8 SDVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFID----SYSICDILNSCLNPILLNVGTQAQAYMTKRGL--ISHP 81 (373)
Q Consensus 8 ~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~ 81 (373)
..+...+......+.+.|++++|++.|+++.+.. |+ ...+..+..++.+.|++++|...|+..++... +...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456667777788888999999999999888743 43 45677777888888999999999988877631 1224
Q ss_pred hHHHHHHHHhHh--------cCCHHHHHHHHccCC
Q 047393 82 AVGNCLININSR--------CGKIDDADLAFKSTP 108 (373)
Q Consensus 82 ~~~~~li~~~~~--------~g~~~~A~~~~~~m~ 108 (373)
..+..+..+|.+ .|++++|...|++..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l 124 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI 124 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 456667777777 788888888887665
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=2.4e-08 Score=88.26 Aligned_cols=182 Identities=8% Similarity=-0.045 Sum_probs=134.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-CCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 30 VHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGL-ISHPAVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 30 A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
|+..|++....+ .++..++..+..++...|++++|++++...+..|- .-+...+-.++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 56677777888899999999999999998876653 2367788888999999999999999999987
Q ss_pred C--C-----ChhHHHHHHHH--HHh--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHc
Q 047393 109 E--K-----NSLSWTFIISA--RVN--HGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177 (373)
Q Consensus 109 ~--~-----d~~~~~~li~~--~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 177 (373)
+ | +..+..-|..+ ... .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 4 23455555555 222 34899999999998765 4664454555668999999999999999875432
Q ss_pred C--------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 178 H--------IEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 178 g--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
. -+-|..+.-.+|......|+ +|.++++++....|+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 1 13356666566666666776 8899999855567753
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.3e-08 Score=96.15 Aligned_cols=153 Identities=8% Similarity=-0.046 Sum_probs=101.9
Q ss_pred CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
.|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367788888888876653 34567788888888888888888888876543 35677888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHhhCCC
Q 047393 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA---GMFEEVLEFIKGIVPG 212 (373)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 212 (373)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++++..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8877763 3456778888888888888888888888876542 33567777788888888 8888888888886665
Q ss_pred CCC
Q 047393 213 KLC 215 (373)
Q Consensus 213 ~p~ 215 (373)
.|+
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 553
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=8.9e-08 Score=80.34 Aligned_cols=186 Identities=11% Similarity=-0.063 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
.+-.....+...|++++|++.|++..+. .|+.. .+... ...+ . ........+.+...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~--~~~~--~---------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT--NVDK--N---------------SEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH--HSCT--T---------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh--hhcc--h---------------hhhhHHHHHHHHHHH
Confidence 3444556678999999999999999874 45433 22210 1111 0 011223345577788
Q ss_pred HhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHH
Q 047393 92 SRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL--VGEA 166 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a 166 (373)
.+.|++++|...|++.. ..+...|..+...+...|++++|...|++..+.. +-+..++..+-..|...|. .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 88899999998888765 2367888888999999999999999999988864 3456778777777765543 3444
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLL 223 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li 223 (373)
...++... ...|....+.....++...|++++|...|++++...|+......+.
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555442 2223333344445566678999999999999898889876544443
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=1.3e-07 Score=79.09 Aligned_cols=133 Identities=11% Similarity=-0.126 Sum_probs=106.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
.+..+...+.+.|++++|.+.|++...++..+|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566778888999999999998888888889999999999999999999999888764 4567788888889999999
Q ss_pred HHHHHHHHHHhHHHcCC-------------CC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 163 VGEAYRLFLSMEEVYHI-------------EP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~-------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
+++|...|+...+...- .| ....+..+..+|.+.|++++|.+.|++++...|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999988653211 11 12677778888888888888888888877777754
No 96
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.88 E-value=2.4e-07 Score=91.34 Aligned_cols=233 Identities=7% Similarity=0.004 Sum_probs=176.8
Q ss_pred hHHHHHHHHHHHcC-------CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHH-HHHHHHHHcCCCCchhH
Q 047393 12 IPWNLLLKACIKAK-------DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGT-QAQAYMTKRGLISHPAV 83 (373)
Q Consensus 12 ~~~n~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~~ 83 (373)
..|...+.---..+ ..+.+..+|++.... ++-+...|.....-+.+.|+.++|. ++|++.... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 56777766433332 134466778888765 3336667777777777778888896 999999864 4667777
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCCC-------------CC------------hhHHHHHHHHHHhCCChHHHHHHHHHH
Q 047393 84 GNCLININSRCGKIDDADLAFKSTPE-------------KN------------SLSWTFIISARVNHGHPSEALDLFKDK 138 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~-------------~d------------~~~~~~li~~~~~~g~~~~A~~l~~~m 138 (373)
|-..+...-+.|+++.|.++|+++.+ |+ ...|-..+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888999999999999999987753 31 235888888888899999999999999
Q ss_pred HHc-CCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC--
Q 047393 139 QWR-YTSMNPTTFRSALKAYALM-GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-- 214 (373)
Q Consensus 139 ~~~-g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-- 214 (373)
.+. + .+....|...+..--+. ++.+.|..+|+...+.+ +-+...+...++.....|+.+.|..+|++++...|
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 876 2 12233443333333333 55999999999998874 44666778889988899999999999999888555
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 215 --CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 215 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
....|...+.--.+.|+.+.+.++.+++.+..|++
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34789999999999999999999999999988886
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.87 E-value=4.1e-08 Score=79.99 Aligned_cols=156 Identities=12% Similarity=-0.011 Sum_probs=98.1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 047393 84 GNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKA-YAL 159 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~ 159 (373)
+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...+++..+.. |+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 33444556667777777777776653 245666667777777777777777777665542 333322221111 112
Q ss_pred cCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC---PLIWRTLLLSSRVHGDMKLA 235 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A 235 (373)
.+...+|...+++..+. .| +...+..+...+...|++++|...|++++...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223456667766554 34 4677777777888888888888888877766664 45777777888888888888
Q ss_pred HHHHHHHhc
Q 047393 236 KYALDKLLE 244 (373)
Q Consensus 236 ~~~~~~m~~ 244 (373)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776653
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=4.8e-08 Score=87.26 Aligned_cols=211 Identities=10% Similarity=-0.025 Sum_probs=131.5
Q ss_pred cCCHhHHHHHHHHHHhc------CCCCCH----HHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCCc-hhHHHHHH
Q 047393 24 AKDYEMVHELLERIQLC------CGFIDS----YSICDILNSCLNPILLNVGTQAQAYMTKR----GLISH-PAVGNCLI 88 (373)
Q Consensus 24 ~g~~~~A~~l~~~m~~~------g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li 88 (373)
.|++++|.+++++..+. ++.++. ..|......+...|++++|...|.+..+. |-.+. ..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888888776542 112332 24666666777778888888877776443 21111 34677777
Q ss_pred HHhHhcCCHHHHHHHHccCC-------CC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---C--CHHHHHHHH
Q 047393 89 NINSRCGKIDDADLAFKSTP-------EK--NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS---M--NPTTFRSAL 154 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~-------~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--~~~t~~~ll 154 (373)
..|.+.|++++|...|++.. .+ -..+++.+...|.. |++++|++.|++..+.... + ...+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77888888777777665432 11 13566677777777 8888888888776543110 0 135677777
Q ss_pred HHHHccCCHHHHHHHHHHhHHHc---CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH------HHHHHHHH
Q 047393 155 KAYALMGLVGEAYRLFLSMEEVY---HIEPS-EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP------LIWRTLLL 224 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~~~~---g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~li~ 224 (373)
..|.+.|++++|...|++..+.. +..+. ...+..+...+...|++++|...|++++ ..|+. .....++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 78888888888888888775432 11111 2255566666777788888888888877 56632 23444555
Q ss_pred HHHHcCCHHHHHH
Q 047393 225 SSRVHGDMKLAKY 237 (373)
Q Consensus 225 ~~~~~g~~~~A~~ 237 (373)
++ ..|+.+.+..
T Consensus 242 ~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 242 AY-DEQDEEQLLR 253 (307)
T ss_dssp HH-HTTCHHHHHH
T ss_pred HH-HhcCHHHHHH
Confidence 54 5666665555
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=7.6e-08 Score=81.75 Aligned_cols=183 Identities=10% Similarity=-0.036 Sum_probs=107.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-h---hHHHHH
Q 047393 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLI-S-HPAVGNCLININSRCGKIDDADLAFKSTPE--KN-S---LSWTFI 118 (373)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d-~---~~~~~l 118 (373)
..+..+...+.+.|++++|...|+.+++.... | ....+..+..+|.+.|++++|...|++..+ |+ . .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34444555666677777777777777664311 1 124556666777777777777777766542 22 1 133333
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC-HhHH-----------
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS-EEHY----------- 186 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~----------- 186 (373)
..++.+.|.. .++ .|..+-..+...|+.++|...|+++.+. .|+ ...+
T Consensus 85 g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHH
Confidence 3333331100 000 0011111222345555555555555433 222 1111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 187 ------SIMVEALGRAGMFEEVLEFIKGIVPGKLCP----LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 187 ------~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..+...|.+.|++++|...|+++++..|+. ..+..+..++.+.|+.++|.+.++.+....|++
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 245667889999999999999977766652 578889999999999999999999999887765
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=2e-08 Score=79.66 Aligned_cols=140 Identities=10% Similarity=0.057 Sum_probs=94.6
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047393 87 LININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLV 163 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 163 (373)
|..++...|++++|++.+...... +...+..+...|.+.|++++|++.|++..+.. +-+..+|..+-..|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556667777777777766543 34556667777888888888888888877663 33567777777888888888
Q ss_pred HHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHH-HHhhCCCCC-CHHHHHHHHHHHHHcC
Q 047393 164 GEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEF-IKGIVPGKL-CPLIWRTLLLSSRVHG 230 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~p-~~~~~~~li~~~~~~g 230 (373)
++|...|+...+. .| +...+..+...|.+.|+.++|.+. ++++++..| ++..|......+...|
T Consensus 82 ~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 8888888877654 44 566777777788888887765554 466566666 4566666555555555
No 101
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.84 E-value=7.7e-08 Score=88.52 Aligned_cols=197 Identities=8% Similarity=-0.078 Sum_probs=151.5
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--C---CC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCC-
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCC--G---FI-DSYSICDILNSCLNPILLNVGTQAQAYMTKR----GLIS- 79 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g--~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~- 79 (373)
..+|+.+...|...|++++|++.+++..+.- . .| ...+++.+..++...|++++|...++...+. +-.+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 4678999999999999999999999887631 1 11 1356888889999999999999999987653 2111
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCC--------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC
Q 047393 80 HPAVGNCLININSRCGKIDDADLAFKSTPE--------K-NSLSWTFIISARVNHGHPSEALDLFKDKQWR----YTSMN 146 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~ 146 (373)
...+++.+...|.+.|++++|.+.|++..+ | ...++..+...|.+.|++++|.+.+++..+. +-+..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 124788899999999999999999876543 2 3567888999999999999999999987653 21222
Q ss_pred HHHHHHHHHHHHccCC---HHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 147 PTTFRSALKAYALMGL---VGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
...+..+-..+...|+ +++|..+++.. +..| ....+..+...|.+.|++++|.+.|++++.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3345677778888998 77888888766 2233 345777889999999999999999988543
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=7.7e-08 Score=80.48 Aligned_cols=131 Identities=11% Similarity=-0.027 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
...+..+...+...|++++|.+.|++.. .|+...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 3456667788899999999999998773 6788999999999999999999999999997652 446788999999
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKLC-----------------PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
+|.+.|++++|.+.|++++...|+ ...|..+..++...|++++|...+++..+..|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999997664442 278889999999999999999999999998874
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=6.9e-08 Score=96.01 Aligned_cols=181 Identities=9% Similarity=-0.097 Sum_probs=148.1
Q ss_pred HHcCCHhHHHHHHHHHHh------cCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc
Q 047393 22 IKAKDYEMVHELLERIQL------CCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC 94 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~------~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 94 (373)
...|++++|++.|++..+ ....| +...+..+..++.+.|++++|...+++.++.. +.+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 778999999999999881 01334 45678888899999999999999999998865 45678999999999999
Q ss_pred CCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 95 GKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 95 g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
|++++|.+.|++.. .| +...|..+..++.+.|++++ ++.|++..+.. +-+...|..+..++.+.|++++|...|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999875 23 67889999999999999999 99999998874 4467889999999999999999999999
Q ss_pred HhHHHcCCCCC-HhHHHHHHHHHHhcCC--------HHHHHHHHHh
Q 047393 172 SMEEVYHIEPS-EEHYSIMVEALGRAGM--------FEEVLEFIKG 208 (373)
Q Consensus 172 ~m~~~~g~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~ 208 (373)
+..+ +.|+ ...+..+..++...|+ +++|.+.+..
T Consensus 559 ~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 559 EVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp TSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred hhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 8853 4665 5677777777766444 7777888877
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=4.7e-08 Score=86.49 Aligned_cols=163 Identities=9% Similarity=-0.048 Sum_probs=132.9
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 047393 78 ISHPAVGNCLININSRCGKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSA- 153 (373)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l- 153 (373)
+.+...+..+...+.+.|++++|...|++.. .| +...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 5566777888888999999999999999875 34 6788899999999999999999999998765 4555433322
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcC
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC---PLIWRTLLLSSRVHG 230 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~li~~~~~~g 230 (373)
...+.+.++.++|...+++..... +.+...+..+...|...|+.++|.+.|.+++...|+ ...+..+...+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333667788888899998887652 446788999999999999999999999998776674 578999999999999
Q ss_pred CHHHHHHHHHHHhc
Q 047393 231 DMKLAKYALDKLLE 244 (373)
Q Consensus 231 ~~~~A~~~~~~m~~ 244 (373)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998887654
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=7e-08 Score=86.20 Aligned_cols=189 Identities=13% Similarity=0.027 Sum_probs=139.7
Q ss_pred CCchHHHHHHHHHHHHc------CCCCc----hhHHHHHHHHhHhcCCHHHHHHHHccCCC-------C--ChhHHHHHH
Q 047393 59 PILLNVGTQAQAYMTKR------GLISH----PAVGNCLININSRCGKIDDADLAFKSTPE-------K--NSLSWTFII 119 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~------g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~--d~~~~~~li 119 (373)
.|++++|.+++++..+. +..++ ...|+.....|...|++++|.+.|.+..+ + -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677777777766442 11233 23567777889999999999988876542 1 145788899
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC----CHhHHHHHH
Q 047393 120 SARVNHGHPSEALDLFKDKQWRY--T-SMN--PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP----SEEHYSIMV 190 (373)
Q Consensus 120 ~~~~~~g~~~~A~~l~~~m~~~g--~-~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p----~~~~~~~li 190 (373)
..|.+.|++++|+..|++..+.- . .|. ..+++.+-..|.. |++++|...|++......-.. ...+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999875431 1 121 3577888888888 999999999998865421111 146788889
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGKL---C----PLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..|.+.|++++|.+.|++++...| + ...+..+...+...|++++|...|++.. ..|+.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 999999999999999998765222 1 2366777778888899999999999999 88754
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1.9e-07 Score=76.01 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CChhHHHHHHHH-HHhC
Q 047393 49 ICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE--KNSLSWTFIISA-RVNH 125 (373)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~-~~~~ 125 (373)
+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|++..+ |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3445556667777777777777765543 34566777788888888888888888887763 333322222111 2222
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC---HhHHHHHHHHHHhcCCHHHH
Q 047393 126 GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS---EEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 126 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A 202 (373)
+...+|...+++..+.. +-+...+..+...+...|++++|...|+++.+. .|+ ...+..+...+...|+.++|
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcH
Confidence 33445778888877763 335788888888899999999999999988654 443 55788888999999999999
Q ss_pred HHHHHhh
Q 047393 203 LEFIKGI 209 (373)
Q Consensus 203 ~~~~~~~ 209 (373)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888763
No 107
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.75 E-value=2.3e-06 Score=80.74 Aligned_cols=225 Identities=9% Similarity=-0.064 Sum_probs=140.2
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCCCCchhHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI---LLNVGTQAQAYMTKRGLISHPAVGNCL 87 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~l 87 (373)
...+..+...|...+.++++.+-...+.+.-...++..+..|...+.+.| +.++|.+.|+...+.| +++...+..|
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 34455555556666644444433222222111223336666666676777 7788888888877777 4555555556
Q ss_pred HHHhHhc----CCHHHHHHHHccCCCCChhHHHHHHHH-H--HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047393 88 ININSRC----GKIDDADLAFKSTPEKNSLSWTFIISA-R--VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM 160 (373)
Q Consensus 88 i~~~~~~----g~~~~A~~~~~~m~~~d~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 160 (373)
...|... +++++|.+.|++....+...+..|... | ...+++++|.+.|++..+.| +...+..+-..|. .
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 6666544 678888888877663356666666665 3 45778888888888877766 5666666666665 4
Q ss_pred C-----CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---
Q 047393 161 G-----LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGR----AGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRV--- 228 (373)
Q Consensus 161 g-----~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~--- 228 (373)
| ++++|..+|++.. +-+...+..|-..|.. ..+.++|.++|+++.. .-++.....|...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NGQNSADFAIAQLFSQGKG 369 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TTCTTHHHHHHHHHHSCTT
T ss_pred CCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hChHHHHHHHHHHHHhCCC
Confidence 4 7888888887663 3355566666666665 3377888888887555 3344455555555543
Q ss_pred -cCCHHHHHHHHHHHhccC
Q 047393 229 -HGDMKLAKYALDKLLELD 246 (373)
Q Consensus 229 -~g~~~~A~~~~~~m~~~~ 246 (373)
..+.++|...|+...+..
T Consensus 370 ~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 447788888887777644
No 108
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.75 E-value=2.8e-07 Score=84.65 Aligned_cols=196 Identities=10% Similarity=-0.037 Sum_probs=150.1
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--C---CC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCCC-
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCC--G---FI-DSYSICDILNSCLNPILLNVGTQAQAYMTKR----GLIS- 79 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g--~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~- 79 (373)
..+|+.+...|...|++++|++.+++..+.- . .+ ...+++.+..++...|++++|.+.++...+. +-++
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4578889999999999999999999877521 1 11 2456788889999999999999999987653 2111
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCC-----C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCH
Q 047393 80 HPAVGNCLININSRCGKIDDADLAFKSTPE-----K---NSLSWTFIISARVNHGHPSEALDLFKDKQWRY----TSMNP 147 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~ 147 (373)
...+++.+...|.+.|++++|.+.|++..+ . ...++..+...|.+.|++++|.+.+++..+.. -+...
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 235788899999999999999999987653 2 35677888899999999999999999987642 12223
Q ss_pred HHHHHHHHHHHccCC---HHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 047393 148 TTFRSALKAYALMGL---VGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 148 ~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (373)
..+..+-..+...|+ +++|..+++.. +..| ....+..+...|.+.|+.++|.+.|++++
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456666667777888 77888877764 2233 34566788899999999999999999854
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=3.7e-07 Score=76.77 Aligned_cols=157 Identities=9% Similarity=-0.066 Sum_probs=80.2
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFIISARVNHG----HPSEALDLFKDKQWRYTSMNPTTFRSALK 155 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 155 (373)
...+..|...|...+++++|.+.|++..+ .+..++..|...|.. + ++++|.++|++..+.| +...+..+-.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 33444444444444445555444444332 234444444444444 3 5555555555554443 4445555555
Q ss_pred HHHc----cCCHHHHHHHHHHhHHHcCCCCC---HhHHHHHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047393 156 AYAL----MGLVGEAYRLFLSMEEVYHIEPS---EEHYSIMVEALGR----AGMFEEVLEFIKGIVPGKLCPLIWRTLLL 224 (373)
Q Consensus 156 ~~~~----~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~li~ 224 (373)
.|.. .+++++|..+|++..+. .|+ ...+..|-..|.. .++.++|.+.|+++....+++..+..|..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGM 170 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5544 55666666666655322 221 4555555555655 55666666666664443234445555555
Q ss_pred HHHHc-C-----CHHHHHHHHHHHhc
Q 047393 225 SSRVH-G-----DMKLAKYALDKLLE 244 (373)
Q Consensus 225 ~~~~~-g-----~~~~A~~~~~~m~~ 244 (373)
.|... | +.++|...|++..+
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 55432 2 66666666666655
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=4.9e-07 Score=79.95 Aligned_cols=164 Identities=9% Similarity=-0.098 Sum_probs=123.4
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CC------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcC---CCCC--
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPE---KN------SLSWTFIISARVNHGHPSEALDLFKDKQWRY---TSMN-- 146 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~-- 146 (373)
...+...+..+...|++++|.+.+++..+ .. ...+..+...+...|++++|++.+++..+.. ..+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555677888999999999998864431 11 1234456667788899999999999887532 1222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC------
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS-----EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC------ 215 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~------ 215 (373)
..+|+.+...|...|++++|...+++..+.....|+ ..++..+...|.+.|++++|.+.+++++...++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458889999999999999999999988632111222 258888999999999999999999987652222
Q ss_pred -HHHHHHHHHHHHHcCCHHHH-HHHHHHHhc
Q 047393 216 -PLIWRTLLLSSRVHGDMKLA-KYALDKLLE 244 (373)
Q Consensus 216 -~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 244 (373)
..+|..+...|.+.|+.++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 57889999999999999999 777888765
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.72 E-value=1.7e-07 Score=91.06 Aligned_cols=149 Identities=10% Similarity=-0.065 Sum_probs=109.3
Q ss_pred cCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 047393 24 AKDYEMVHELLERIQLCCGFI-DSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADL 102 (373)
Q Consensus 24 ~g~~~~A~~l~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 102 (373)
.|++++|++.|++..+. .| +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999888764 44 46678888888889999999999999988764 4457788889999999999999999
Q ss_pred HHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHhHHH
Q 047393 103 AFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM---GLVGEAYRLFLSMEEV 176 (373)
Q Consensus 103 ~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~ 176 (373)
.|++.. ..+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|...+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998765 2367788889999999999999999999988764 34577888888888888 9999999999988765
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.71 E-value=6.3e-07 Score=75.97 Aligned_cols=186 Identities=12% Similarity=-0.038 Sum_probs=114.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCch---hHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCG-FID-SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHP---AVG 84 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~ 84 (373)
+...+..+...+.+.|++++|++.|+++.+... .|. ...+..+..++.+.|++++|...|+.+++... -+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHH
Confidence 344566677889999999999999999987532 121 34677788899999999999999999987642 122 234
Q ss_pred HHHHHHhHh------------------cCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 047393 85 NCLININSR------------------CGKIDDADLAFKSTPE--KN-SLSWTFIISARVNHGHPSEALDLFKDKQWRYT 143 (373)
Q Consensus 85 ~~li~~~~~------------------~g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 143 (373)
..+..+|.+ .|++++|...|+++.+ |+ ..++.+....- .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHH-----
Confidence 444444443 3455566665555443 21 12221111000 000000
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 144 SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 144 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
......+...+.+.|++++|...|+.+.+.+.-.| ....+..+..+|.+.|+.++|.+.++.+....|
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112345667778888888888888876631111 124577778888888888888888887433334
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=1.1e-08 Score=81.25 Aligned_cols=126 Identities=10% Similarity=-0.081 Sum_probs=103.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047393 120 SARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM 198 (373)
Q Consensus 120 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 198 (373)
..+...|++++|++.++..... .|+ ...+..+-..|.+.|++++|...|++..+.. +-+...|..+...|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 4455668889999988877543 232 4456678889999999999999999997652 3377899999999999999
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCC
Q 047393 199 FEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYA-LDKLLELDPGM 249 (373)
Q Consensus 199 ~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~P~~ 249 (373)
+++|...|+++++..| ++..|..+...|.+.|+.++|.+. +++..+++|++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 9999999999888778 578999999999999998876654 68999999876
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=3.4e-06 Score=74.46 Aligned_cols=202 Identities=11% Similarity=-0.038 Sum_probs=140.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH---HHHHHHHhHhcCCHHHHHHHHccCCCC
Q 047393 34 LERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV---GNCLININSRCGKIDDADLAFKSTPEK 110 (373)
Q Consensus 34 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (373)
+.++......|+..+...+...+.-.-+ .+.......+... +...+..+.+.|++++|.+++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 4444433356777777777766653221 1111111222332 333467789999999999999876531
Q ss_pred -----C----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHH
Q 047393 111 -----N----SLSWTFIISARVNHGHPSEALDLFKDKQWRYTS-MN----PTTFRSALKAYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 111 -----d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 176 (373)
+ ...+..+...+...|++++|++.|++..+.... ++ ..+++.+...|...|++++|..+|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 123445667777888999999999999874222 23 336899999999999999999999998642
Q ss_pred c----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC------CCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Q 047393 177 Y----HIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPG------KLC-PLIWRTLLLSSRVHG-DMKLAKYALDKLL 243 (373)
Q Consensus 177 ~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 243 (373)
. +..+ ...++..+...|.+.|++++|.+.+++++.. .+. ..+|..+..++.+.| +.++|...+++..
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 1122 2347888999999999999999999887641 122 578999999999999 5799999999887
Q ss_pred c
Q 047393 244 E 244 (373)
Q Consensus 244 ~ 244 (373)
.
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 6
No 115
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=3.9e-07 Score=69.87 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=65.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSR 227 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 227 (373)
.+...-..|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|+++++..| ++..|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44455556666777777777777665441 33556666677777777777777777777666555 4566777777777
Q ss_pred HcCCHHHHHHHHHHHhccCCCC
Q 047393 228 VHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
..|++++|.+.|++.++++|++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HCCCHHHHHHHHHHHHHHCcCC
Confidence 7777777777777777777655
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=6e-07 Score=71.21 Aligned_cols=100 Identities=8% Similarity=-0.152 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLS 225 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 225 (373)
...+..+-..+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++++...| ++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3466777778888999999999999887652 33678888888999999999999999998777777 56888888999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCC
Q 047393 226 SRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
|...|++++|...|++..++.|+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999887764
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=8.1e-06 Score=68.46 Aligned_cols=125 Identities=9% Similarity=0.007 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC----chHHHHHHHHHHHHcCCCCchhHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI----LLNVGTQAQAYMTKRGLISHPAVGN 85 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~~~~~~~~ 85 (373)
+..++..+-..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|.++|+...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444555555555555555555555555433 33344444444444 3 4555555555554433 233444
Q ss_pred HHHHHhHh----cCCHHHHHHHHccCCCC-C----hhHHHHHHHHHHh----CCChHHHHHHHHHHHHc
Q 047393 86 CLININSR----CGKIDDADLAFKSTPEK-N----SLSWTFIISARVN----HGHPSEALDLFKDKQWR 141 (373)
Q Consensus 86 ~li~~~~~----~g~~~~A~~~~~~m~~~-d----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 141 (373)
.|...|.. .+++++|.+.|++..+. + +.++..|...|.. .+++++|...|++..+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44444444 44555555555544432 1 3444455555544 44555555555554443
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.4e-06 Score=69.32 Aligned_cols=130 Identities=11% Similarity=-0.075 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 4567777788888899999999998887763 3467788888888889999999999999886652 446778888888
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHH--HHHHHHcCCHHHHHHHHHHHhc
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTL--LLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+...|++++|.+.|++++...| +...+..+ ...+...|++++|...++...+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999988776555 44555333 3447778999999998887765
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=1.6e-06 Score=65.02 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 3445555556666666666666666655542 2345555556666666666666666666654431 234455556666
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSS 226 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~ 226 (373)
.+...|++++|.+.|++++...| ++..+..+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 66666666666666665444334 333444443333
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.60 E-value=2.8e-05 Score=69.94 Aligned_cols=228 Identities=13% Similarity=-0.001 Sum_probs=165.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY-SICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
++.+-....+.+..++|+++++++... .|+.. +|+.--.++...+ .++++..+++.++... +-+..+|+.---.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344333344455667899999999984 46544 4777666666677 5999999999998876 56778888777777
Q ss_pred Hhc-C-CHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 92 SRC-G-KIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPS--------EALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 92 ~~~-g-~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
.+. + ++++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+..-..+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 889999999988864 5566665555555555555 8999999999875 448888988888888
Q ss_pred ccCC-------HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCH--------------------HHHHHHHHhhCC
Q 047393 159 LMGL-------VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF--------------------EEVLEFIKGIVP 211 (373)
Q Consensus 159 ~~g~-------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~ 211 (373)
+.+. ++++.+.+++..... +-|...|+-+-..+.+.|+. .+..++..++..
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 8776 788999998887652 44778888777777776654 345555555333
Q ss_pred C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCC
Q 047393 212 G-------KLCPLIWRTLLLSSRVHGDMKLAKYALDKLL-ELDP 247 (373)
Q Consensus 212 ~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~P 247 (373)
. .+.+..+..|...|...|+.++|.++++.+. +.+|
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 2 2577899999999999999999999999997 4665
No 121
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.60 E-value=1.4e-06 Score=82.27 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=65.3
Q ss_pred HHHHHHHHccCCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHH
Q 047393 97 IDDADLAFKSTPEKNSLSWTFIISARVNHG---HPSEALDLFKDKQWRYTSMNPTTFRSALKAYALM----GLVGEAYRL 169 (373)
Q Consensus 97 ~~~A~~~~~~m~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~ 169 (373)
.++|..+++.....+..++..|...|...| +.++|++.|++..+.| .++...+..+-..|... ++.++|..+
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 333444444444444445555555565566 5566666666655554 33334333344444332 455555555
Q ss_pred HHHhHHHcCCCCCHhHHHHHHHH-H--HhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 047393 170 FLSMEEVYHIEPSEEHYSIMVEA-L--GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG-----DMKLAKYALDK 241 (373)
Q Consensus 170 ~~~m~~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~ 241 (373)
|+... +-+...+..|-.. | ...|+.++|.+.|+++.. .-++..+..|...|. .| +.++|...|++
T Consensus 240 ~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 240 LEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 55542 1223333333333 2 234555555555555333 224444444444444 23 55555555554
Q ss_pred Hh
Q 047393 242 LL 243 (373)
Q Consensus 242 m~ 243 (373)
..
T Consensus 313 Aa 314 (452)
T 3e4b_A 313 AV 314 (452)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=4.7e-07 Score=73.41 Aligned_cols=124 Identities=11% Similarity=0.085 Sum_probs=95.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH-HHhcCCH--
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA-LGRAGMF-- 199 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~-- 199 (373)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+... +...|+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877663 4467788888888889999999999998886652 3466677777777 7788888
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 200 EEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 200 ~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
++|...|++++...| +...|..+...+...|++++|...++++.+..|++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999988776666 46788888889999999999999999999887754
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=2.2e-07 Score=73.47 Aligned_cols=101 Identities=11% Similarity=-0.054 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLS 225 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 225 (373)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++++...| ++..|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3455556666777777777777777775541 33566677777777777888888888777666555 45677777777
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 226 SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+...|++++|...|+...++.|++
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCC
Confidence 888888888888888877766543
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=3.3e-06 Score=69.55 Aligned_cols=96 Identities=6% Similarity=-0.107 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC----
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWR----YTSM--NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS---- 182 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---- 182 (373)
.++..+...+...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++......-..+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34444555555555555555555554332 1011 1234555556666667777776666665432111111
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
..++..+...+...|++++|.+.+++
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 22345566666667777777766666
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.57 E-value=1e-06 Score=69.87 Aligned_cols=104 Identities=11% Similarity=-0.129 Sum_probs=75.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 190 (373)
+...+..+...+.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|...|++..+.. +-+...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHH
Confidence 45566677777778888888888888877763 3456777777778888888888888888776542 23566777778
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCCHH
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGKLCPL 217 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (373)
.+|.+.|++++|.+.|++++...|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888887666666654
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=1.8e-06 Score=66.09 Aligned_cols=106 Identities=7% Similarity=-0.085 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 192 (373)
..|......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHH
Confidence 445566666777777777777777766653 3456677777777777777777777777765531 3345667777777
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCC-HHHHHH
Q 047393 193 LGRAGMFEEVLEFIKGIVPGKLC-PLIWRT 221 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 221 (373)
|...|++++|.+.|++++++.|+ ...+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 77777777777777776666663 334433
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.4e-06 Score=71.83 Aligned_cols=153 Identities=12% Similarity=-0.027 Sum_probs=110.9
Q ss_pred HhcCCHHHHHH---HHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCH
Q 047393 92 SRCGKIDDADL---AFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR----YTSM-NPTTFRSALKAYALMGLV 163 (373)
Q Consensus 92 ~~~g~~~~A~~---~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~ 163 (373)
...|++++|.+ .+..-......++..+...+...|++++|...+++..+. +..| ...++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777 554433335667778888888888888888888877552 2222 345777888889999999
Q ss_pred HHHHHHHHHhHHHcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCC---CCCH----HHHHHHHHHHHHcCC
Q 047393 164 GEAYRLFLSMEEVYHIEP-----SEEHYSIMVEALGRAGMFEEVLEFIKGIVPG---KLCP----LIWRTLLLSSRVHGD 231 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~----~~~~~li~~~~~~g~ 231 (373)
++|...+++..+...-.+ ....+..+...+...|++++|...+++++.. .++. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999998765421122 2356778888999999999999999886641 1222 456788889999999
Q ss_pred HHHHHHHHHHHhc
Q 047393 232 MKLAKYALDKLLE 244 (373)
Q Consensus 232 ~~~A~~~~~~m~~ 244 (373)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.54 E-value=4.8e-06 Score=73.48 Aligned_cols=158 Identities=11% Similarity=-0.072 Sum_probs=74.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcC-CCCc----hhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----hhHHHH
Q 047393 52 ILNSCLNPILLNVGTQAQAYMTKRG-LISH----PAVGNCLININSRCGKIDDADLAFKSTPE-----KN----SLSWTF 117 (373)
Q Consensus 52 ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d----~~~~~~ 117 (373)
.+..+...|++++|..+++...+.. ..|+ ...+..+...|...|++++|...|++..+ ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3334444455555555555444321 1111 11222344444444555555555543321 11 124555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHH---cCCCCC-HhHHH
Q 047393 118 IISARVNHGHPSEALDLFKDKQWR-----YTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEV---YHIEPS-EEHYS 187 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-~~~~~ 187 (373)
+...|...|++++|...|++..+. +..|. ..+|..+...|.+.|++++|...+++..+. .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555555566666665555555421 11111 125555666666666666666666654321 111222 34566
Q ss_pred HHHHHHHhcCC-HHHHHHHHHhh
Q 047393 188 IMVEALGRAGM-FEEVLEFIKGI 209 (373)
Q Consensus 188 ~li~~~~~~g~-~~~A~~~~~~~ 209 (373)
.+..+|.+.|+ .++|.+.++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 66666666663 46666655554
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=2e-06 Score=65.01 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHH
Confidence 4455666666667777777777777766552 3355666666677777777777777777765431 334566666677
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGD 231 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 231 (373)
.+.+.|++++|.+.|++++...| +...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 77777777777777776555444 45566666666665554
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.50 E-value=2.1e-06 Score=67.00 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=62.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSR 227 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 227 (373)
.+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++++...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34444555666677777777776665431 23556666666677777777777777776655445 4566666777777
Q ss_pred HcCCHHHHHHHHHHHhccCCC
Q 047393 228 VHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~P~ 248 (373)
..|++++|...|+...++.|+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777765553
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=2.6e-06 Score=63.77 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLINI 90 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 90 (373)
..+|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++.+.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777777777777777766542 2244555666666666666666666666665543 2344445555555
Q ss_pred hHhcCCHHHHHHHHccC
Q 047393 91 NSRCGKIDDADLAFKST 107 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m 107 (373)
|.+.|++++|...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555554443
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=2.6e-06 Score=64.83 Aligned_cols=117 Identities=9% Similarity=0.002 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 190 (373)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHH
Confidence 34556666666667777777777776666542 2355666666666667777777777777665431 23456666666
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHG 230 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g 230 (373)
..+.+.|++++|.+.|++++...| +...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 667777777777777766555444 2345555555554443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=5.6e-06 Score=73.05 Aligned_cols=166 Identities=11% Similarity=-0.087 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----
Q 047393 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH-----PAVGNCLININSRCGKIDDADLAFKSTPE-----KN---- 111 (373)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d---- 111 (373)
...+...+..+...|++++|.+.+....+..-..+ ...+..+...|...|++++|...|++..+ .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34566667777888888888888887766532211 12344566677888899999888765431 11
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhHHHc---CCCC-
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWR-YTSMN-----PTTFRSALKAYALMGLVGEAYRLFLSMEEVY---HIEP- 181 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---g~~p- 181 (373)
..+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|.+.|++++|...+++..+.. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 447888889999999999999999887621 01222 2588888889999999999999998875431 1111
Q ss_pred CHhHHHHHHHHHHhcCCHHHH-HHHHHhhCC
Q 047393 182 SEEHYSIMVEALGRAGMFEEV-LEFIKGIVP 211 (373)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 211 (373)
-..+|..+...|.+.|+.++| ...+++++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156788888999999999999 776776543
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=2.9e-06 Score=73.94 Aligned_cols=187 Identities=10% Similarity=-0.056 Sum_probs=106.0
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHH-------HHHcCCCchHHHHHHHHHHHHcCCCCch-------------
Q 047393 23 KAKDYEMVHELLERIQLCCGFID-SYSICDIL-------NSCLNPILLNVGTQAQAYMTKRGLISHP------------- 81 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~ll-------~~~~~~~~~~~a~~~~~~m~~~g~~~~~------------- 81 (373)
+.++...|.+.|.+..+. .|+ ...|+.++ ..+.+.++..++...+.. ..++.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~--~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSG--SVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHH--TTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHH--HhcCChhhhhhhhccCCcccc
Confidence 578888888888888874 453 34555552 222222222233222222 22322221
Q ss_pred ---------hHHHHHHHHhHhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HH
Q 047393 82 ---------AVGNCLININSRCGKIDDADLAFKSTPE--KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--PT 148 (373)
Q Consensus 82 ---------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ 148 (373)
..+-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1223355667777888888888877763 433355555566777777777777776443321 111 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS--EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.+..+-.++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++....|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 5566666777777777777777776421 22143 234445556666777777777777775555555
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=2.4e-06 Score=77.26 Aligned_cols=147 Identities=12% Similarity=-0.045 Sum_probs=117.3
Q ss_pred CHHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHH
Q 047393 96 KIDDADLAFKSTPE--K-NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--------------PTTFRSALKAYA 158 (373)
Q Consensus 96 ~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~ 158 (373)
++++|.+.|+...+ | +...|..+...|.+.|++++|...|++..+...... ..+|..+..+|.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444332 2 466788888999999999999999999887642221 488999999999
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHH-H
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLA-K 236 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A-~ 236 (373)
+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++++...| +...+..+...+...|+.++| .
T Consensus 208 ~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997652 44778899999999999999999999999887777 577888999999999999988 4
Q ss_pred HHHHHHhc
Q 047393 237 YALDKLLE 244 (373)
Q Consensus 237 ~~~~~m~~ 244 (373)
..++.|..
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 57777764
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=3.8e-06 Score=66.69 Aligned_cols=123 Identities=10% Similarity=-0.047 Sum_probs=69.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL 159 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 159 (373)
.+..+...+.+.|++++|...|++.. ..+..+|..+...+...|++++|.+.+++..+.. +.+..++..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 34444555555566666665555433 2245556666666666666666666666665542 3345566666666666
Q ss_pred cCCHHHHHHHHHHhHHHcCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHh
Q 047393 160 MGLVGEAYRLFLSMEEVYHIEPSEEHY--SIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 208 (373)
.|++++|...+++..+.. +.+...+ ......+.+.|++++|.+.+.+
T Consensus 94 ~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 677777777776665432 1233333 2233335556666666666654
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=9.3e-07 Score=77.81 Aligned_cols=189 Identities=13% Similarity=-0.006 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHHH
Q 047393 46 SYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISAR 122 (373)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~~ 122 (373)
...+..+...+.+.|++++|...|+..++.. +.+...|..+..+|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555555666666666666666665543 23566667777777777777777777766543 2566777777888
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 047393 123 VNHGHPSEALDLFKDKQWRYTSMNP-TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201 (373)
Q Consensus 123 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 201 (373)
...|++++|...|++..+.. |+. ..+...+....+ ...+.. +...... ..+.+......+.. + ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHHHH-H-HHHHHHH
Confidence 88888888888887776542 110 011111111111 111111 1222122 33445544444433 2 3689999
Q ss_pred HHHHHHhhCCCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHhc
Q 047393 202 VLEFIKGIVPGKLCPL-IWRTLLLSSRVH-GDMKLAKYALDKLLE 244 (373)
Q Consensus 202 A~~~~~~~~~~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~ 244 (373)
|.+.++++++..|+.. ....+-..+.+. +.+++|.++|+++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999998788778654 334444444444 678899999998876
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=6.1e-07 Score=78.26 Aligned_cols=185 Identities=10% Similarity=-0.075 Sum_probs=135.7
Q ss_pred CCCchHHHHHHHHHHHHcCCCCchhHHHHH-------HHHhHhcCCHHHHHHHHccCCC--C-------C----------
Q 047393 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCL-------ININSRCGKIDDADLAFKSTPE--K-------N---------- 111 (373)
Q Consensus 58 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~--~-------d---------- 111 (373)
+.++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5799999999999998875 4457788877 4555555555555544443332 1 1
Q ss_pred -----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC--Hh
Q 047393 112 -----SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS--EE 184 (373)
Q Consensus 112 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~ 184 (373)
...+-.+...+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 1123446677889999999999999987754 65545556666888999999999999866221 1 121 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCCC--CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 185 HYSIMVEALGRAGMFEEVLEFIKGIVPGK--LC--PLIWRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
.+..+-.++.+.|++++|+..|+++..-. |. +..+.....++.+.|+.++|..+|+++...+|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67778899999999999999999965422 43 34677778889999999999999999999876
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=3.3e-05 Score=69.11 Aligned_cols=232 Identities=13% Similarity=-0.037 Sum_probs=161.1
Q ss_pred hhHHHHHHHH---HHHcCCHh-HHHHHHHHHHhcCCCCCHHH-HHHHHHHHcCCCc----------hHHHHHHHHHHHHc
Q 047393 11 EIPWNLLLKA---CIKAKDYE-MVHELLERIQLCCGFIDSYS-ICDILNSCLNPIL----------LNVGTQAQAYMTKR 75 (373)
Q Consensus 11 ~~~~n~li~~---~~~~g~~~-~A~~l~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~m~~~ 75 (373)
+..|..+.+. ..+.|.+. +|+++++++.. +.|+..| |+.--..+...+. ++++..+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 3445555443 34567665 79999999987 4566543 5543222222222 67888999998876
Q ss_pred CCCCchhHHHHHHHHhHhcC--CHHHHHHHHccCCC---CChhHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHH
Q 047393 76 GLISHPAVGNCLININSRCG--KIDDADLAFKSTPE---KNSLSWTFIISARVNHGH-PSEALDLFKDKQWRYTSMNPTT 149 (373)
Q Consensus 76 g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t 149 (373)
. +-+..+|+.-.-.+.+.| .+++++.+++.+.+ .|..+|+--.-.+...|. ++++++.++++.+.. +-|...
T Consensus 104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SA 181 (331)
T 3dss_A 104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSS 181 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHH
Confidence 5 567888887777777777 48999999998874 477788777777778888 589999999999875 457777
Q ss_pred HHHHHHHHHcc--------------CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc-----------CCHHHHHH
Q 047393 150 FRSALKAYALM--------------GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA-----------GMFEEVLE 204 (373)
Q Consensus 150 ~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~ 204 (373)
|+.....+.+. +.++++.+.+....... +-|...|+-+--.+.+. +.++++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 77666555544 45788889888887652 34667776555555554 45788999
Q ss_pred HHHhhCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 205 FIKGIVPGKLCPLIWRTLLLS-----SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 205 ~~~~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.++++++..||. .|..+-.+ ....|..+++...++++.+++|..
T Consensus 260 ~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 260 SCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 998877778865 34432222 224677888999999999988633
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=5e-06 Score=61.55 Aligned_cols=99 Identities=17% Similarity=0.063 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 192 (373)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 345555555666666666666666655542 2244555555555555666666666665554431 2234455555555
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC
Q 047393 193 LGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p 214 (373)
+...|++++|.+.+++++...|
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHhhHHHHHHHHHHHHHcCC
Confidence 5555555555555555444444
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=2.7e-06 Score=68.05 Aligned_cols=101 Identities=19% Similarity=0.064 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLS 225 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 225 (373)
...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|.+.|++++|...|++++...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455666666777777777777777775542 23566777777777778888888888877666555 46777778888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC
Q 047393 226 SRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+...|++++|...|++.++++|++
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHccCHHHHHHHHHHHHHhCCCc
Confidence 888888888888888888776654
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.37 E-value=7.1e-06 Score=62.30 Aligned_cols=115 Identities=5% Similarity=-0.102 Sum_probs=82.6
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 456778888888999999999999999887642 2256678888888888889999998888887764 34566777777
Q ss_pred HHhHhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhC
Q 047393 89 NINSRCGKIDDADLAFKSTPE--K-NSLSWTFIISARVNH 125 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~ 125 (373)
.+|.+.|++++|.+.|++..+ | +...+..+...+.+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 777777777777777766542 2 334444444444433
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=2.1e-05 Score=58.00 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 047393 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSS 226 (373)
Q Consensus 148 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~ 226 (373)
..+..+...+...|++++|...++...... +.+...+..+...+.+.|++++|...+++++...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555566666677777777666665431 23555666666666666777777776666555444 355666666666
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC
Q 047393 227 RVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 227 ~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
...|++++|...+++..+..|++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC
Confidence 66677777777776666666655
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=2.7e-06 Score=62.51 Aligned_cols=98 Identities=13% Similarity=0.005 Sum_probs=54.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC---HHHHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC---PLIWRTLLLS 225 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~li~~ 225 (373)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++++...|+ ...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 33444444555555555555555554331 224445555555666666666666666655444443 5566666666
Q ss_pred HHHc-CCHHHHHHHHHHHhccCCC
Q 047393 226 SRVH-GDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 226 ~~~~-g~~~~A~~~~~~m~~~~P~ 248 (373)
+... |++++|.+.+++.....|+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 6666 6666666666666665543
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=1.1e-06 Score=72.69 Aligned_cols=156 Identities=9% Similarity=-0.055 Sum_probs=101.0
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CC---C-----------HH
Q 047393 87 LININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYT-SM---N-----------PT 148 (373)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p---~-----------~~ 148 (373)
.+......|.+++|.+.++.-.+. ....+..+...+.+.|++++|.+.|++..+..- .| . ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334444556666666666543321 455677778888889999999999998876421 11 1 26
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSR 227 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 227 (373)
.+..+..+|.+.|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++++...| +...+..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 78888888889999999999999886652 44677888888999999999999999998777666 5677777777777
Q ss_pred HcCCHHHHH-HHHHHHhc
Q 047393 228 VHGDMKLAK-YALDKLLE 244 (373)
Q Consensus 228 ~~g~~~~A~-~~~~~m~~ 244 (373)
..++.+++. ..+..+..
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777776666 45555544
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=3.8e-06 Score=67.98 Aligned_cols=115 Identities=9% Similarity=-0.015 Sum_probs=56.0
Q ss_pred CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CChhHHHHHHHH-HHhCCCh--HHHH
Q 047393 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE---KNSLSWTFIISA-RVNHGHP--SEAL 132 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~d~~~~~~li~~-~~~~g~~--~~A~ 132 (373)
.|++++|...++...+.. +.+...+..+...|...|++++|...|++..+ .+...|..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344445555555444432 23344555555555555555555555544331 234444445444 4455555 5565
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 133 DLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 133 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
..+++..+.. +.+...+..+...+...|++++|...|+...+
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555442 22344555555555555666666666655543
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.35 E-value=8.7e-06 Score=61.39 Aligned_cols=116 Identities=11% Similarity=-0.064 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 157 (373)
...+..+...+...|++++|...|++.. ..+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 4455566666666777777777666543 2355667777777777778888887777776653 33466777777778
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF 199 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 199 (373)
...|++++|...+++..+.. +.+...+..+..++.+.|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888775541 23556666666666666653
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.9e-06 Score=64.47 Aligned_cols=95 Identities=16% Similarity=0.026 Sum_probs=48.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH
Q 047393 150 FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRV 228 (373)
Q Consensus 150 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~ 228 (373)
+...-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++++...| ++..|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3334444445555555555555544331 22344555555555555555555555555444444 34455555555555
Q ss_pred cCCHHHHHHHHHHHhccC
Q 047393 229 HGDMKLAKYALDKLLELD 246 (373)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~ 246 (373)
.|++++|...+++..+++
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 555555555555555544
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=5.1e-06 Score=62.78 Aligned_cols=112 Identities=12% Similarity=0.066 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC-CCC----HhHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI-EPS----EEHYS 187 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~-~p~----~~~~~ 187 (373)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+...- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776653 345666777777777777777777777776544211 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047393 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLS 225 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~ 225 (373)
.+...+.+.|++++|.+.|++++...|++..+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777788888877777766655666555554443
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=3.4e-06 Score=63.99 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=59.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 047393 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGD 231 (373)
Q Consensus 153 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 231 (373)
+...+.+.|++++|...+++..+.. +.+...|..+..++.+.|+.++|...|++++...| ++..|..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445556677777777777665541 23556666666677777777777777777666555 45666677777777777
Q ss_pred HHHHHHHHHHHhccCCC
Q 047393 232 MKLAKYALDKLLELDPG 248 (373)
Q Consensus 232 ~~~A~~~~~~m~~~~P~ 248 (373)
+++|...+++.++.+|+
T Consensus 101 ~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 77777777777776664
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1e-05 Score=61.76 Aligned_cols=107 Identities=10% Similarity=-0.004 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcC-CCCC----HhHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYH-IEPS----EEHYS 187 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g-~~p~----~~~~~ 187 (373)
.++.-+...+.+.|++++|++.|++..+.. +-+..+|+.+-.+|.+.|++++|...++...+... ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 355566667777777777777777766653 33456666777777777777777777776654310 0111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 047393 188 IMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR 220 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (373)
.+..++...|++++|.+.|++++...|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 566666677777777777776655556655443
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=4.6e-06 Score=64.07 Aligned_cols=102 Identities=9% Similarity=-0.144 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHH
Q 047393 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLL 223 (373)
Q Consensus 145 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li 223 (373)
.+...+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++++...| ++..|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 345666666666777777777777777665441 33456666777777777777777777777655445 456777777
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 224 LSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
.++...|++++|...+++..+..|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777777775543
No 153
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.30 E-value=4.9e-06 Score=65.54 Aligned_cols=93 Identities=16% Similarity=0.041 Sum_probs=47.5
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
..+..+...+.+.|++++|...|++.. ..+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 344444455555555555555555432 1244455555555555555555555555554442 223444555555555
Q ss_pred ccCCHHHHHHHHHHhHH
Q 047393 159 LMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~ 175 (373)
..|++++|...|+...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.9e-05 Score=59.79 Aligned_cols=98 Identities=11% Similarity=-0.045 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 192 (373)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 455666677777777777777777776653 3456777777777777888888888887776541 3346677777777
Q ss_pred HHhcCCHHHHHHHHHhhCCCC
Q 047393 193 LGRAGMFEEVLEFIKGIVPGK 213 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~ 213 (373)
+...|++++|.+.|++++...
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 778888888888887766544
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1e-05 Score=62.79 Aligned_cols=100 Identities=10% Similarity=-0.067 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN----PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHY 186 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 186 (373)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...++...+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence 4455555666666666666666666665553 344 3455555555555666666666665554331 2234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
..+..+|...|++++|.+.|++++...|
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5555555555555555555555444334
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.28 E-value=6.3e-06 Score=74.45 Aligned_cols=92 Identities=12% Similarity=-0.069 Sum_probs=55.1
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
.+|..+..+|.+.|++++|...|++.. ..+..+|..+..+|...|++++|...|++..+.. +-+...+..+...+.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 455566666666666666666665543 2245566666666666667777766666666552 234556666666666
Q ss_pred ccCCHHHH-HHHHHHhH
Q 047393 159 LMGLVGEA-YRLFLSME 174 (373)
Q Consensus 159 ~~g~~~~a-~~~~~~m~ 174 (373)
+.|+.++| ..+|+.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666 33455443
No 157
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.27 E-value=2.9e-05 Score=76.55 Aligned_cols=210 Identities=9% Similarity=-0.077 Sum_probs=153.8
Q ss_pred ChhHHHHHHHHHHHcCCHhHHH-HHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC---------CC
Q 047393 10 VEIPWNLLLKACIKAKDYEMVH-ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGL---------IS 79 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~~ 79 (373)
+...|-..+.-+.+.|+.++|. ++|++.... ++.+...+...+...-+.|+++.|.++|+.+++... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3455666677777889999997 999998864 444555677777788889999999999999876420 13
Q ss_pred ------------chhHHHHHHHHhHhcCCHHHHHHHHccCCCC----ChhHHHHHHHHHHhC-CChHHHHHHHHHHHHcC
Q 047393 80 ------------HPAVGNCLININSRCGKIDDADLAFKSTPEK----NSLSWTFIISARVNH-GHPSEALDLFKDKQWRY 142 (373)
Q Consensus 80 ------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g 142 (373)
...+|...+....+.|.++.|.++|.+..+. ....|-..+..-.+. ++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 2346888888888899999999999877532 223333222222333 5599999999998876
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHH
Q 047393 143 TSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP---SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIW 219 (373)
Q Consensus 143 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 219 (373)
++-+...+...++.....|+.+.|..+|+..... .++ ....|...+..-.+.|..+.+.++.+++....|+....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~--~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK--ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT--SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 4446667778888888899999999999998653 221 34688888888889999999999999966556654333
Q ss_pred HHHH
Q 047393 220 RTLL 223 (373)
Q Consensus 220 ~~li 223 (373)
..++
T Consensus 578 ~~f~ 581 (679)
T 4e6h_A 578 EEFT 581 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.25 E-value=5.8e-06 Score=63.20 Aligned_cols=99 Identities=12% Similarity=-0.056 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC--------HHHH
Q 047393 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC--------PLIW 219 (373)
Q Consensus 148 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~ 219 (373)
.++..+-..+.+.|++++|...|++..+.. +-+...|+.+..+|.+.|++++|.+.+++++.+.|+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456677788999999999999999987652 346788999999999999999999999997764332 2478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 220 RTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 220 ~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
..+..++...|++++|.+.|++.++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 88888999999999999999999886654
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.22 E-value=1.7e-05 Score=58.04 Aligned_cols=101 Identities=16% Similarity=0.052 Sum_probs=66.2
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC--CHhHHHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP--SEEHYSI 188 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~ 188 (373)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 34555666666777777777777777766653 3355666667777777777777777777765431 22 4566677
Q ss_pred HHHHHHhc-CCHHHHHHHHHhhCCCCC
Q 047393 189 MVEALGRA-GMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 189 li~~~~~~-g~~~~A~~~~~~~~~~~p 214 (373)
+...+.+. |++++|.+.+++++...|
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 77777777 777777777777554444
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=1.7e-05 Score=60.77 Aligned_cols=98 Identities=9% Similarity=-0.038 Sum_probs=64.0
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMV 190 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 190 (373)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 45566666666777777777777777666553 3345666666667777777777777777665441 23456666677
Q ss_pred HHHHhcCCHHHHHHHHHhhCC
Q 047393 191 EALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~ 211 (373)
.+|...|++++|...|++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777766544
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.8e-05 Score=59.39 Aligned_cols=93 Identities=10% Similarity=-0.052 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047393 81 PAVGNCLININSRCGKIDDADLAFKSTPE--KN----SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154 (373)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 154 (373)
...+..+...+.+.|++++|.+.|++..+ |+ ...|..+...|...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 33444444445555555555555544321 22 3344444444555555555555555444431 22344444444
Q ss_pred HHHHccCCHHHHHHHHHHhH
Q 047393 155 KAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~ 174 (373)
.++...|++++|...|++..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555443
No 162
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=7.3e-06 Score=74.12 Aligned_cols=134 Identities=8% Similarity=-0.107 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPT------------------TFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------------------t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
...|..+...+.+.|++++|...|++..+. .|+.. .|..+..+|.+.|++++|...++..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566666777777888888777776654 34433 7788888899999999999999988
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCC
Q 047393 174 EEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC-PLIWRTLLLSS-RVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 174 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.+.. +.+...|..+..+|...|++++|.+.|++++...|+ ...+..+.... ...+..+++...|..|.+..|++
T Consensus 257 l~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 257 LTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 7652 346788888999999999999999999997777774 44555555442 34567778888888888877643
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=1e-05 Score=61.13 Aligned_cols=99 Identities=9% Similarity=-0.093 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC----C----HHH
Q 047393 147 PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL----C----PLI 218 (373)
Q Consensus 147 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p----~----~~~ 218 (373)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++++...| + ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3567778888899999999999999997652 44778888999999999999999999999766433 2 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 047393 219 WRTLLLSSRVHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 219 ~~~li~~~~~~g~~~~A~~~~~~m~~~~P 247 (373)
|..+...+...|++++|...++++.+..|
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998765
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=1.7e-05 Score=60.02 Aligned_cols=92 Identities=21% Similarity=0.130 Sum_probs=48.2
Q ss_pred HHHccCCHHHHHHHHHHhHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHH
Q 047393 156 AYALMGLVGEAYRLFLSMEEVYHIEPSE---EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC----PLIWRTLLLSSRV 228 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~li~~~~~ 228 (373)
.+...|++++|...|+...+.. +.+. ..+..+...+.+.|++++|...|++++...|+ +..+..+..++..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 3444555555555555554431 1111 24444555555556666666655554443332 3445555556666
Q ss_pred cCCHHHHHHHHHHHhccCCCC
Q 047393 229 HGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 229 ~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.|++++|...++++.+..|++
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTTS
T ss_pred cCCHHHHHHHHHHHHHHCCCC
Confidence 666666666666666655543
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.16 E-value=1.5e-05 Score=62.03 Aligned_cols=100 Identities=9% Similarity=-0.085 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
...+..+...+.+.|++++|...|++..... +.+...|..+-.++.+.|++++|...|+...... +.+...+..+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHH
Confidence 3444555566667777777777777766653 3355666666667777777777777777765441 234556666677
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCC
Q 047393 192 ALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
+|...|++++|.+.|++++...|
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777777776554333
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=5.4e-05 Score=70.26 Aligned_cols=193 Identities=7% Similarity=-0.032 Sum_probs=136.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCC-C---------------HHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CCCC
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFI-D---------------SYSICDILNSCLNPILLNVGTQAQAYMTKR--GLIS 79 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~ 79 (373)
...+.+.|++++|++.|.++.+..-.. + ...+..+...|...|++++|.+.+..+.+. .+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 356788999999999999998743211 1 123677888999999999999999887542 2211
Q ss_pred c---hhHHHHHHHHhHhcCCHHHHHHHHccCCC--------C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CC--
Q 047393 80 H---PAVGNCLININSRCGKIDDADLAFKSTPE--------K-NSLSWTFIISARVNHGHPSEALDLFKDKQWR--YT-- 143 (373)
Q Consensus 80 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-- 143 (373)
. ..+.+.+-..+...|+++.|.++++.... + -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12344445556677899999888865431 1 2457788899999999999999999887543 11
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHHc---CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 047393 144 SMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVY---HIEPS--EEHYSIMVEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 144 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (373)
.|. ..++..+...|...|++++|..+++...... +.+|. ...+..+...+...|++++|...|.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 222 4578888899999999999999998875432 11221 2456667777778899999988876654
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=2.6e-05 Score=60.97 Aligned_cols=131 Identities=10% Similarity=0.001 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC----Hh
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYT-SMN----PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS----EE 184 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~ 184 (373)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455555566666666666666665543210 011 135566666667777777777777765432111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhCCC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 185 HYSIMVEALGRAGMFEEVLEFIKGIVPG---KLC----PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+..+...+...|++++|.+.+++++.. ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666667777778888887777765431 111 35677777888888888888888888765
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=4.7e-05 Score=60.63 Aligned_cols=96 Identities=16% Similarity=0.004 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 192 (373)
..|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344444445555555555555555544432 2234445555555555555555555555554331 2234445555555
Q ss_pred HHhcCCHHHHHHHHHhhCC
Q 047393 193 LGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~ 211 (373)
|.+.|++++|.+.|++++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555443
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.00011 Score=68.27 Aligned_cols=191 Identities=8% Similarity=-0.115 Sum_probs=140.0
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCCc----------------hhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CCh
Q 047393 54 NSCLNPILLNVGTQAQAYMTKRGLISH----------------PAVGNCLININSRCGKIDDADLAFKSTPE-----KNS 112 (373)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~d~ 112 (373)
..+.+.|++++|.+.|..+++..-... ...+..|...|.+.|++++|.+.+....+ ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677999999999999987542211 12467789999999999999999987752 121
Q ss_pred ----hHHHHHHHHHHhCCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC--
Q 047393 113 ----LSWTFIISARVNHGHPSEALDLFKDKQW----RYTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-- 181 (373)
Q Consensus 113 ----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-- 181 (373)
.+.+.+-..+...|++++|.++++.... .+..+. ..++..+...+...|++++|..++++......-..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2333344445567899999999988753 333443 45778889999999999999999998865432221
Q ss_pred --CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC----C-CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 182 --SEEHYSIMVEALGRAGMFEEVLEFIKGIVP----G-KLC---PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 182 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
...++..++..|...|++++|..+++++.. . .|. ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 246788899999999999999999987543 1 221 24666777777889999999998888765
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.11 E-value=3.3e-05 Score=67.75 Aligned_cols=97 Identities=9% Similarity=-0.145 Sum_probs=43.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSR 227 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 227 (373)
.+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.+.+++++...| +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33334444444444444444444443321 11334444444444444555555555544444333 2344444444444
Q ss_pred HcCCHHHHHHHHHHHhccCC
Q 047393 228 VHGDMKLAKYALDKLLELDP 247 (373)
Q Consensus 228 ~~g~~~~A~~~~~~m~~~~P 247 (373)
..|++++|...+++..+++|
T Consensus 84 ~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 55555555555544444433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=4e-05 Score=57.93 Aligned_cols=98 Identities=10% Similarity=-0.077 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-CHhHHHHHHHH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-SEEHYSIMVEA 192 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 192 (373)
.+..+...+.+.|++++|...|++..+.. +.+...+..+-.++...|++++|...|++..+. .| +...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34556667777888888888888877763 336677777777788888888888888877654 34 56677777788
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCC
Q 047393 193 LGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
|.+.|+.++|...+++++...|+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 88888888888888876665554
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=4.8e-05 Score=71.71 Aligned_cols=132 Identities=8% Similarity=-0.082 Sum_probs=105.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHH
Q 047393 111 NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--------------PTTFRSALKAYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 176 (373)
....|..+...+.+.|++++|+..|++..+..-... ...|..+..+|.+.|++++|...+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355788888899999999999999999877531111 578889999999999999999999999765
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHhc
Q 047393 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAK-YALDKLLE 244 (373)
Q Consensus 177 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 244 (373)
. +.+...|..+..+|...|++++|...|++++++.| +...+..+..++.+.|+.++|. .++..|..
T Consensus 347 ~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 44678899999999999999999999999888888 4568888888899999888876 45666654
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.08 E-value=1.9e-05 Score=62.82 Aligned_cols=66 Identities=15% Similarity=0.033 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 183 EEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
...|..+..+|.+.|++++|...+++++...| ++..|..+..++...|++++|...|++..+++|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 35666677777777777777777777666555 4667777777777777777777777777776653
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=5e-06 Score=78.91 Aligned_cols=116 Identities=12% Similarity=-0.058 Sum_probs=54.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 047393 122 RVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE 201 (373)
Q Consensus 122 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 201 (373)
+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...+++..+. -+.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 334455555555555554442 223455555555555555555555555555332 12234455555555555555555
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 047393 202 VLEFIKGIVPGKL-CPLIWRTLLLS--SRVHGDMKLAKYALD 240 (373)
Q Consensus 202 A~~~~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 240 (373)
|.+.|+++++..| +...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555444333 22233333333 445555555555555
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=4.1e-05 Score=72.59 Aligned_cols=152 Identities=11% Similarity=-0.020 Sum_probs=85.4
Q ss_pred HhHhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 047393 90 INSRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 166 (373)
.|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+.. +-+..++..+..+|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445556666666555443 2245666667777777777777777777766653 33456677777777777777777
Q ss_pred HHHHHHhHHHcCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHH-----------hhCCCCC------------CHHHHHH
Q 047393 167 YRLFLSMEEVYHIEPSEEHYSIMVEA--LGRAGMFEEVLEFIK-----------GIVPGKL------------CPLIWRT 221 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~-----------~~~~~~p------------~~~~~~~ 221 (373)
...|++..+.. +.+...+..+..+ +.+.|++++|.+.++ +.+...| .......
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~ 171 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKE 171 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHH
Confidence 77777775542 1123344444444 666777777777777 4333222 2345666
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHhc
Q 047393 222 LLLSSRVHGDM--KLAKYALDKLLE 244 (373)
Q Consensus 222 li~~~~~~g~~--~~A~~~~~~m~~ 244 (373)
++..+.+.+.+ +.+..++.+..+
T Consensus 172 lie~l~~~~~l~e~~v~~L~~~a~e 196 (477)
T 1wao_1 172 LMQWYKDQKKLHRKCAYQILVQVKE 196 (477)
T ss_dssp HHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 67776665543 334445555443
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=2e-05 Score=62.31 Aligned_cols=93 Identities=17% Similarity=0.071 Sum_probs=67.3
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHhhCCC-------C
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPS-------------EEHYSIMVEALGRAGMFEEVLEFIKGIVPG-------K 213 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~ 213 (373)
-..+.+.|++++|...|+...+- .|+ ...|+.+..++.+.|++++|+..+++++.+ .
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34445556666666666555433 222 226777777777788887777777776665 8
Q ss_pred CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 214 LC-PLIW----RTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 214 p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
|+ ...| .....++...|++++|...|++.++++|++
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 86 4688 899999999999999999999999988755
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=5.4e-05 Score=62.35 Aligned_cols=126 Identities=11% Similarity=-0.094 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC-C--------------chhHHHHHHHHhHhcCCHHHHHHHHccCC---
Q 047393 47 YSICDILNSCLNPILLNVGTQAQAYMTKRGLI-S--------------HPAVGNCLININSRCGKIDDADLAFKSTP--- 108 (373)
Q Consensus 47 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~--- 108 (373)
..+..+...+.+.|++++|...|.+.++..-. | ...++..+..+|.+.|++++|...+++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34444455555555555555555555443210 0 02566667777777777777777776554
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHh
Q 047393 109 EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAY-RLFLSM 173 (373)
Q Consensus 109 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~-~~~~~m 173 (373)
..+..+|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++. ..+..+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356667777777777777888877777776653 234556666666666666666655 444444
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.00 E-value=0.00055 Score=61.18 Aligned_cols=188 Identities=11% Similarity=-0.029 Sum_probs=138.8
Q ss_pred CCCch-HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHccCCC---CChhHHHHHHHHHH
Q 047393 58 NPILL-NVGTQAQAYMTKRGLISHPAVGNCLININSRCGK----------IDDADLAFKSTPE---KNSLSWTFIISARV 123 (373)
Q Consensus 58 ~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~---~d~~~~~~li~~~~ 123 (373)
+.|.. ++|..+.+.++... +-+..+||.--..+...+. +++++.+++.+.. .+..+|+--.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44554 57899999998765 3445566653333332222 6788888887763 46778887777777
Q ss_pred hCCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc----
Q 047393 124 NHGH--PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL-VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA---- 196 (373)
Q Consensus 124 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---- 196 (373)
+.|+ +++++++++++.+.. +-|..+|+.---...+.|. ++++.+.++.+.+.. +-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcc
Confidence 7774 899999999999875 4578888887777778888 699999999998763 45777787766666554
Q ss_pred ----------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCC
Q 047393 197 ----------GMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVH-----------GDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 197 ----------g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.++++++.+.+++...| |...|+-+-..+.+. +.++++.+.++++.+.+|++
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 457899999999887777 677787555555444 45889999999999999988
No 179
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.99 E-value=0.00058 Score=60.47 Aligned_cols=210 Identities=11% Similarity=-0.021 Sum_probs=156.0
Q ss_pred ChhHHHHHHHHHHHcC--CHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHH----cCC---CchHHHHHHHHHHHHcCCCC
Q 047393 10 VEIPWNLLLKACIKAK--DYEMVHELLERIQLCCGFID-SYSICDILNSC----LNP---ILLNVGTQAQAYMTKRGLIS 79 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~-~~~~~~ll~~~----~~~---~~~~~a~~~~~~m~~~g~~~ 79 (373)
+...||.--..+...| +++++++.++.+...+ |. ..+|+.--..+ ... ++++++..+++.+.+.. +.
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pk 142 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PK 142 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CC
Confidence 4456888777788888 9999999999998853 43 33455433333 333 78999999999998876 66
Q ss_pred chhHHHHHHHHhHhcCCHH--HHHHHHccCCC---CChhHHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCCCCHH
Q 047393 80 HPAVGNCLININSRCGKID--DADLAFKSTPE---KNSLSWTFIISARVNHGH------PSEALDLFKDKQWRYTSMNPT 148 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~---~d~~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~ 148 (373)
|..+|+.-.-++.+.|.++ ++++.++++.+ .|..+|+--...+.+.|+ ++++++.++++.... +-|..
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~S 221 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPS 221 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHH
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCcc
Confidence 8888888877788888888 99999988874 467778776666677776 889999999988875 45788
Q ss_pred HHHHHHHHHHccCCHHH-HHHHHHHhHHHc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCC-HHHHHHHH
Q 047393 149 TFRSALKAYALMGLVGE-AYRLFLSMEEVY-HIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP-GKLC-PLIWRTLL 223 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~-a~~~~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~-~~~~~~li 223 (373)
.|+..-..+.+.|+... +..+..+..+.. .-+.+...+..+.+.|.+.|+.++|.++++.+.. ..|. ...|+-..
T Consensus 222 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 222 TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 89888888888887444 445665543220 1134678888999999999999999999999654 5663 45555443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.98 E-value=9.8e-05 Score=55.74 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=56.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC---HhHHHHHH
Q 047393 117 FIISARVNHGHPSEALDLFKDKQWRYTSMNP---TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPS---EEHYSIMV 190 (373)
Q Consensus 117 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li 190 (373)
.+...+...|++++|...|++..+... .+. ..+..+..++.+.|++++|...|+...+.. +.+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 344555666677777777766665421 112 355556666666777777777777665542 112 44555666
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 191 EALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
.++.+.|+.++|...|++++...|+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 6666777777777777665544453
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=4.4e-06 Score=62.74 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 047393 125 HGHPSEALDLFKDKQWRYT--SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 125 ~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 202 (373)
.|++++|+..|++..+.+. +-+...+..+...|...|++++|...+++..+.. +-+...+..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 3455555555555554321 1122344444445555555555555555554331 22334444444555555555555
Q ss_pred HHHHHhhCC
Q 047393 203 LEFIKGIVP 211 (373)
Q Consensus 203 ~~~~~~~~~ 211 (373)
.+.|++++.
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554333
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=2.8e-05 Score=60.87 Aligned_cols=137 Identities=11% Similarity=-0.059 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC-CchhHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGF-ID----SYSICDILNSCLNPILLNVGTQAQAYMTKRGLI-SHPAVGN 85 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~ 85 (373)
.+|+.+...+...|++++|++.+++..+..-. ++ ..++..+...+...|++++|...++...+..-. ++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 45677777777888888888888776642100 11 124455555555666666666665554332100 0000
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcc
Q 047393 86 CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWR----YTSM-NPTTFRSALKAYALM 160 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~ 160 (373)
....++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...
T Consensus 87 ------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 87 ------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142 (164)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence 01233444555555556666665555554322 1111 134556666677777
Q ss_pred CCHHHHHHHHHHhHH
Q 047393 161 GLVGEAYRLFLSMEE 175 (373)
Q Consensus 161 g~~~~a~~~~~~m~~ 175 (373)
|++++|...+++..+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 777777777776644
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=0.00013 Score=57.80 Aligned_cols=102 Identities=17% Similarity=0.046 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWR-------YT----------SMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~----------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
..+......+.+.|++++|+..|.+..+. .- +-+...|..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555556666666666666666665543 00 11235777888888889999999999888866
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 176 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
.. +.+...|..+..+|...|++++|...|++++...|+.
T Consensus 92 ~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 92 RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 42 3467788888888899999999999998877777754
No 184
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.86 E-value=0.0022 Score=60.96 Aligned_cols=239 Identities=10% Similarity=-0.036 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHH-HHHHcc
Q 047393 28 EMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDA-DLAFKS 106 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 106 (373)
+.+..+|+++... .+-+...|...+.-+.+.|+++.|..++++.++. +.+...+.. |+...+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 4567788888774 3345667777777778899999999999999887 444433332 2222111111 112221
Q ss_pred CC--C-------C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHh
Q 047393 107 TP--E-------K---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYAL-MGLVGEAYRLFLSM 173 (373)
Q Consensus 107 m~--~-------~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~a~~~~~~m 173 (373)
.. + + ....|-..+....+.+..+.|..+|++. +.. ..+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 0 1 2245667777777788899999999998 321 2344555432222222 34799999999999
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-c------C
Q 047393 174 EEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE-L------D 246 (373)
Q Consensus 174 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~------~ 246 (373)
.+.++- ++..+...++...+.|+.+.|..+|++ .. .....|...+.-=...|+.+.+..+++++.+ + +
T Consensus 347 l~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er-~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~ 421 (493)
T 2uy1_A 347 LLKHPD--STLLKEEFFLFLLRIGDEENARALFKR-LE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILP 421 (493)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH-SC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBC
T ss_pred HHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH-HH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCC
Confidence 876432 345567788888899999999999999 42 3678899999888889999999999998875 1 1
Q ss_pred CCCccchhheecceEEEEecCCcchHHHHHHHHHHHHHHHHCCCccCC
Q 047393 247 PGMYVGCWIEIQNKIYEFVSNEELTSEVSDKLAEIEENMKELGFVLNR 294 (373)
Q Consensus 247 P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~ 294 (373)
|......| ...++..+.+..+++.-.-..+.|..
T Consensus 422 ~~~~~~~~--------------~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 422 PLPPREHN--------------VQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp CCCCC--C--------------CCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred cccccccH--------------HHHHHHhhhHHHHHHHhhhhccccCC
Confidence 21100011 22234456677777776666666666
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=9.7e-05 Score=67.58 Aligned_cols=122 Identities=11% Similarity=-0.068 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHc--------------CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHc
Q 047393 113 LSWTFIISARVNHGHPSEALDLFKDKQWR--------------YTS-MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177 (373)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 177 (373)
..|..+...+.+.|++++|++.|++..+. ... -+..+|..+..+|.+.|++++|...+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 34677777888888888888888887651 011 23456777777777888888888888877543
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 047393 178 HIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKY 237 (373)
Q Consensus 178 g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 237 (373)
.| +...+..+..+|.+.|++++|.+.|+++++..| +...+..+...+...++.+++.+
T Consensus 303 --~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 --DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 566777777788888888888888887666566 45666666666666666665543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=2.3e-05 Score=58.71 Aligned_cols=81 Identities=10% Similarity=-0.018 Sum_probs=39.1
Q ss_pred CCHHHHHHHHccCCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 047393 95 GKIDDADLAFKSTPEK------NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYR 168 (373)
Q Consensus 95 g~~~~A~~~~~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 168 (373)
|++++|+..|++..+. +..+|..+...|...|++++|...|++..+.. +-+..++..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555443321 23444555555555555555555555555442 2234455555555555555555555
Q ss_pred HHHHhHHH
Q 047393 169 LFLSMEEV 176 (373)
Q Consensus 169 ~~~~m~~~ 176 (373)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=0.00016 Score=68.04 Aligned_cols=92 Identities=7% Similarity=-0.137 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID----------------SYSICDILNSCLNPILLNVGTQAQAYMTKR 75 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 75 (373)
..|+.+-..|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...++..++.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45666777777777777777777777653 222 233444444444444444444444444443
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 047393 76 GLISHPAVGNCLININSRCGKIDDADLAFKS 106 (373)
Q Consensus 76 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 106 (373)
. +.+...|..+..+|.+.|++++|...|++
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~ 376 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEK 376 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2 22333444444444444444444444443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.73 E-value=0.00024 Score=64.91 Aligned_cols=102 Identities=7% Similarity=-0.057 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHHc-------------CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCC
Q 047393 148 TTFRSALKAYALMGLVGEAYRLFLSMEEVY-------------HIEP-SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGK 213 (373)
Q Consensus 148 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-------------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 213 (373)
..+..+-..+.+.|++++|...|++..+.. ...| +...|..+..+|.+.|++++|.+.+++++...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677788899999999999999886511 0123 45788899999999999999999999988877
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 214 L-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 214 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
| +...|..+..+|...|++++|...|++..+++|++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 7 57899999999999999999999999999988765
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.71 E-value=0.00016 Score=68.56 Aligned_cols=124 Identities=12% Similarity=-0.011 Sum_probs=96.6
Q ss_pred HHHhCCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHH----cCC-CCC-HhHHH
Q 047393 121 ARVNHGHPSEALDLFKDKQWR---YTSMN----PTTFRSALKAYALMGLVGEAYRLFLSMEEV----YHI-EPS-EEHYS 187 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~g~-~p~-~~~~~ 187 (373)
.+...|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|..++++.... +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466789999999999887653 12333 458899999999999999999999887532 221 233 47889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC-----CCCC---H-HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 188 IMVEALGRAGMFEEVLEFIKGIVP-----GKLC---P-LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~~~-----~~p~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.|...|...|++++|..++++++. ..|+ + .+.+.+-.++...+.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 3343 3 4556666778889999999999999876
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.68 E-value=0.00015 Score=65.32 Aligned_cols=142 Identities=13% Similarity=-0.048 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHh
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININ 91 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 91 (373)
..|..+-..+.+.|++++|+..|++.... .|+... +...++..++...+ ....|+.+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 44666666677778888888888877653 344331 12222332222111 012566666677
Q ss_pred HhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHccCCHHHH
Q 047393 92 SRCGKIDDADLAFKSTP---EKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKA-YALMGLVGEA 166 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~a 166 (373)
.+.|++++|...|++.. ..+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776554 235566777777777777777777777776544 233 2333333333 2234556666
Q ss_pred HHHHHHhH
Q 047393 167 YRLFLSME 174 (373)
Q Consensus 167 ~~~~~~m~ 174 (373)
..+|..|.
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 67777664
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00027 Score=66.99 Aligned_cols=95 Identities=6% Similarity=-0.065 Sum_probs=56.0
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCC-------C---C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCC-
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTP-------E---K-NSLSWTFIISARVNHGHPSEALDLFKDKQWR---YTSMN- 146 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------~---~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~- 146 (373)
.+++.|..+|...|++++|+.++++.. - | ...+++.|...|...|++++|+.++++..+. -+.||
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 355556666666666666655554432 1 1 2355666777777777777777766665431 12233
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHhHHH
Q 047393 147 ---PTTFRSALKAYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 147 ---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 176 (373)
..+.+.+-.++...+.+++|+.+|+.+++.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234455556666777788888888877553
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=5.7e-05 Score=55.30 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
.|..+...+...|++++|.+.|++..+.. +.+...+..+..++.+.|++++|...+++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444444444444444444444444431 223344444444444444444444444444
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.59 E-value=0.0039 Score=60.26 Aligned_cols=150 Identities=9% Similarity=-0.044 Sum_probs=116.2
Q ss_pred HHHHHHHHccCCC--C-ChhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--
Q 047393 97 IDDADLAFKSTPE--K-NSLSWTFIISARVNHGH----------PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG-- 161 (373)
Q Consensus 97 ~~~A~~~~~~m~~--~-d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-- 161 (373)
-++|++.++.+.+ | +..+|+.--..+...|+ ++++++.++++.+.. +-+..+|+.---.+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3566777766652 3 45566655555555555 888999999988774 447778888877888888
Q ss_pred CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc----------
Q 047393 162 LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAG-MFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVH---------- 229 (373)
Q Consensus 162 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~---------- 229 (373)
+++++...++.+.+.. +-+...|+.-.-.+.+.| ..+++++.++++++..| |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 7799999999997762 447788887777778888 89999999999888777 678898888887763
Q ss_pred ----CCHHHHHHHHHHHhccCCCC
Q 047393 230 ----GDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 230 ----g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.++++.+.+++++..+|++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCC
Confidence 56799999999999999998
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00013 Score=53.31 Aligned_cols=97 Identities=7% Similarity=-0.089 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCc-------h
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISH-------P 81 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-------~ 81 (373)
++...|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++..++.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 345677888888888999999999998887742 2356677788888888889999988888887653 43 4
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 82 AVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
..+..+..++...|+.+.|...|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 455556666666666666666555543
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.51 E-value=9.5e-05 Score=58.31 Aligned_cols=89 Identities=7% Similarity=-0.069 Sum_probs=66.5
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM----------FEEVLEFIKGIVPGKL-CPLIWRTLLLSSR 227 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~p-~~~~~~~li~~~~ 227 (373)
+.+.+++|.+.++...+.. +-+...|+.+-.++...++ +++|...|++++++.| +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 4455666777777665542 3355666666666666654 4589999999888888 4678999999998
Q ss_pred HcC-----------CHHHHHHHHHHHhccCCCC
Q 047393 228 VHG-----------DMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 228 ~~g-----------~~~~A~~~~~~m~~~~P~~ 249 (373)
..| ++++|.+.|++.++++|++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 764 8999999999999999876
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.48 E-value=0.001 Score=52.50 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC--------H-----HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCC
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLCCGFID--------S-----YSICDILNSCLNPILLNVGTQAQAYMTKRGLI 78 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 78 (373)
..+...-..+.+.|++++|++.|++..+. .|+ . ..|+.+..++.+.|++++|...++..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 34556667778888999999988888763 333 1 14555555555555555555555544432
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHH----HHHHHHHHhCCChHHHHHHHHHHHH
Q 047393 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSW----TFIISARVNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 140 (373)
|-+.+ ++...+...| .....++...|++++|+..|++..+
T Consensus 87 ------------~n~~~----------e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 ------------FNRRG----------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ------------HHHHC----------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------hhccc----------cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00000 0111234455 6666777777777777777777654
No 197
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.46 E-value=0.0082 Score=53.88 Aligned_cols=170 Identities=9% Similarity=0.001 Sum_probs=113.1
Q ss_pred CCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhC-C-ChHHH
Q 047393 58 NPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG-KIDDADLAFKSTPE---KNSLSWTFIISARVNH-G-HPSEA 131 (373)
Q Consensus 58 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~d~~~~~~li~~~~~~-g-~~~~A 131 (373)
+...-++|.++++.++... +-+..+|+.--..+...| .+++++++++.+.. .+..+|+--...+.+. + +++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3344567888888888765 445667777666666677 48888888887763 3566677666666555 6 78888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC-----
Q 047393 132 LDLFKDKQWRYTSMNPTTFRSALKAYALMGLVG--------EAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM----- 198 (373)
Q Consensus 132 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~----- 198 (373)
+++++++.+.. +-|..+|+.-.-...+.|.++ ++++.++++.+.. +-|...|+.-...+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccch
Confidence 88888887764 346667765555544444444 7777777776652 3466677766666666665
Q ss_pred --HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 047393 199 --FEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGD 231 (373)
Q Consensus 199 --~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 231 (373)
++++++.+++++...| |...|+-+-..+.+.|+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 5677777777666556 56667665555555554
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.00094 Score=51.52 Aligned_cols=110 Identities=7% Similarity=-0.107 Sum_probs=59.2
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh----cCCHHHH
Q 047393 25 KDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSR----CGKIDDA 100 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A 100 (373)
+++++|++.|++..+.| .|+.. |-..|...+.+++|.++|+...+.| +...+..|-..|.+ .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45667777777776665 23322 4455556666666777777666654 34455555555555 4555555
Q ss_pred HHHHccCCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 047393 101 DLAFKSTPE-KNSLSWTFIISARVN----HGHPSEALDLFKDKQWRY 142 (373)
Q Consensus 101 ~~~~~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 142 (373)
.+.|++..+ .++.++..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555544332 244444444444444 445555555555444443
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.36 E-value=0.0047 Score=59.67 Aligned_cols=168 Identities=9% Similarity=-0.061 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHccCCC---CChhHHHHHHHHHHhCC--C
Q 047393 63 NVGTQAQAYMTKRGLISHPAVGNCLININSRCGK----------IDDADLAFKSTPE---KNSLSWTFIISARVNHG--H 127 (373)
Q Consensus 63 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~---~d~~~~~~li~~~~~~g--~ 127 (373)
++|.+.++.+++.. +-+..+|+.--..+.+.|+ ++++++.++.+.+ .+..+|+--.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 45566666665544 2334455544444444444 6677777766652 35566666666666677 5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhc----------
Q 047393 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG-LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRA---------- 196 (373)
Q Consensus 128 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---------- 196 (373)
++++++.++++.+.. +-|..+|+.--....+.| ..+++.+.++++.+.. +-|...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhcccccccccc
Confidence 588888888887764 346777777766667777 7788888887775431 33666777666665553
Q ss_pred ----CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 047393 197 ----GMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 197 ----g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 234 (373)
+.+++|.+.+++++...| |...|+-+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557889999988887777 56788887777777776444
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.36 E-value=0.0005 Score=50.85 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=33.5
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
+...+..+...|.+.|++++|...|++++...| +...|..+..++...|++++|...|++..++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555555444333 3445555555555555555555555555543
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.30 E-value=0.0015 Score=48.17 Aligned_cols=79 Identities=9% Similarity=-0.087 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 047393 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGI 209 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (373)
+|++.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..+|...|+.++|...|+++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666665542 3356666677777777777777777777775541 234566677777777777777777777774
Q ss_pred CC
Q 047393 210 VP 211 (373)
Q Consensus 210 ~~ 211 (373)
+.
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.29 E-value=0.0026 Score=44.21 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 10 VEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 10 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45677888888888999999999998887642 2255677778888888888888888888887754 344566666666
Q ss_pred HhHhc
Q 047393 90 INSRC 94 (373)
Q Consensus 90 ~~~~~ 94 (373)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.24 E-value=0.0057 Score=42.36 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
.|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444445555555555555444432 2233444444444555555555555555443
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.19 E-value=0.0022 Score=46.17 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
...|..+...|.+.|++++|+..|++..+.. +.+...|..+-.+|...|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554442 2233445555555555555555555555443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.16 E-value=0.00056 Score=49.40 Aligned_cols=64 Identities=8% Similarity=-0.094 Sum_probs=37.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 182 SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
+...+..+...|.+.|++++|.+.|++++...| ++..|..+..+|...|++++|...+++.+++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555566666666666666665554444 3455566666666666666666666665553
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.0059 Score=56.79 Aligned_cols=93 Identities=9% Similarity=-0.006 Sum_probs=74.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcC--CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHhhCC--------CCCCH-
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYH--IEP----SEEHYSIMVEALGRAGMFEEVLEFIKGIVP--------GKLCP- 216 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~p~~- 216 (373)
..+..+.+.|++++|..++++...... +.| ...+++.+..+|...|++++|+.++++++. ..|++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 345556778999999999998864321 222 246889999999999999999999988654 23333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 217 LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 217 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999886
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0099 Score=45.62 Aligned_cols=109 Identities=7% Similarity=-0.139 Sum_probs=80.0
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-CCChhHHHHHHHHHHh----CCChHHHHHH
Q 047393 60 ILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP-EKNSLSWTFIISARVN----HGHPSEALDL 134 (373)
Q Consensus 60 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~d~~~~~~li~~~~~----~g~~~~A~~l 134 (373)
++.++|.++|+...+.| .|+.. |-..|...+.+++|.+.|++.. ..+..++..|-..|.. .+++++|.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 46788899999888887 33333 6677777778888888887654 3467777777777777 7788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHH
Q 047393 135 FKDKQWRYTSMNPTTFRSALKAYAL----MGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 135 ~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~ 176 (373)
|++..+.| +...+..+-..|.. .++.++|..+|+...+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 88877765 56666777777766 67888888888877543
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.05 E-value=0.034 Score=52.64 Aligned_cols=183 Identities=11% Similarity=0.039 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC---------CCC--
Q 047393 11 EIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRG---------LIS-- 79 (373)
Q Consensus 11 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---------~~~-- 79 (373)
...|-..+.-+.+.|++++|.++|++.... |.....-.....+.+.++ . ++.+.+.- ..+
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~~---~---~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEEA---V---YGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCTH---H---HHHHHHHTC----------CHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchhH---H---HHHHHHHHHhhccchhhhhccc
Confidence 566777788888999999999999999987 544332221111112221 1 22222210 011
Q ss_pred -chhHHHHHHHHhHhcCCHHHHHHHHccCCCCC--hhHHH--HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047393 80 -HPAVGNCLININSRCGKIDDADLAFKSTPEKN--SLSWT--FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSAL 154 (373)
Q Consensus 80 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d--~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 154 (373)
...+|-..+....+.+.++.|..+|++...|. ...|- +.+... ..++.+.|..+|+...+.- +-+...+...+
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yi 361 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 13456777777777889999999998874343 23332 222222 2346999999999988763 22344556677
Q ss_pred HHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 047393 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (373)
+...+.|+.+.|..+|+.+. .....|...++.-.+.|+.+.+..++++++
T Consensus 362 d~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77788999999999999872 257788888888888899999999998855
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.022 Score=51.27 Aligned_cols=138 Identities=14% Similarity=0.001 Sum_probs=87.2
Q ss_pred CChhHHHHHHHHHH--hCCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH----ccC-CHHHHH---HHHHHhHH
Q 047393 110 KNSLSWTFIISARV--NHGH---PSEALDLFKDKQWRYTSMN-PTTFRSALKAYA----LMG-LVGEAY---RLFLSMEE 175 (373)
Q Consensus 110 ~d~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~----~~g-~~~~a~---~~~~~m~~ 175 (373)
.+..+|...+.+.. ..+. ..+|..+|++..+. .|+ ...|..+.-+|. ..+ ...... ..++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35666666665543 2222 36777788877765 454 233333222221 110 111111 11211111
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 176 VYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 176 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
....+.+..+|.++...+...|++++|...+++++...|+...|..+-..+.-.|++++|...+++...++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 11225577888888777777899999999999988877888888888888889999999999999999988865
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.96 E-value=0.0013 Score=51.68 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=63.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhHHHcCCCC-CHhHHHHHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL----------VGEAYRLFLSMEEVYHIEP-SEEHYSIMVEA 192 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 192 (373)
+.+++++|.+.+++..+.. +-+...|+.+-.++...++ +++|+..|++..+. .| +...|..+-.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence 3445666666666666553 3355566655555555544 45777778777654 45 45677777777
Q ss_pred HHhc-----------CCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047393 193 LGRA-----------GMFEEVLEFIKGIVPGKLCPLIWRTLLL 224 (373)
Q Consensus 193 ~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~li~ 224 (373)
|... |++++|.+.|++++.+.|+...|...+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7766 4788899999888888887666554443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.95 E-value=0.004 Score=57.95 Aligned_cols=86 Identities=14% Similarity=0.008 Sum_probs=69.7
Q ss_pred ccCCHHHHHHHHHHhHHHcC--CCC---C-HhHHHHHHHHHHhcCCHHHHHHHHHhhCC--------CCCCH-HHHHHHH
Q 047393 159 LMGLVGEAYRLFLSMEEVYH--IEP---S-EEHYSIMVEALGRAGMFEEVLEFIKGIVP--------GKLCP-LIWRTLL 223 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~p~~-~~~~~li 223 (373)
..|++++|..++++..+... +.| + ..+++.|..+|...|++++|..++++++. ..|++ .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999988765321 222 2 47889999999999999999999988764 23443 6899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhc
Q 047393 224 LSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 224 ~~~~~~g~~~~A~~~~~~m~~ 244 (373)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999886
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0012 Score=47.19 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=24.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047393 121 ARVNHGHPSEALDLFKDKQWRYTSMNPT-TFRSALKAYALMGLVGEAYRLFLSME 174 (373)
Q Consensus 121 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~ 174 (373)
.+.+.|++++|.+.|++..+.. +.+.. .+..+-.++...|++++|...|++..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555544432 11233 44444444444555555555555443
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.12 Score=51.66 Aligned_cols=154 Identities=11% Similarity=0.066 Sum_probs=100.6
Q ss_pred HHHHHcCCHhHHHH-HHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047393 19 KACIKAKDYEMVHE-LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 19 ~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 97 (373)
......+++++|.+ ++.. + |+......++..+.+.|.+++|.++.+. |. .-.....+.|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 33456889999877 4422 1 2122336677778888888888866632 11 113345678999
Q ss_pred HHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHc
Q 047393 98 DDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY 177 (373)
Q Consensus 98 ~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 177 (373)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 99999988874 668999999999999999999999998753 233444444566666555554444222
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 178 HIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 178 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
| -++....+|.+.|++++|.+++.+
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 123344456666777777777666
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.68 E-value=0.0033 Score=44.74 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=34.2
Q ss_pred HHHHHccCCHHHHHHHHHHhHHHcCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 154 LKAYALMGLVGEAYRLFLSMEEVYHIEPSEE-HYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 154 l~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
...+.+.|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++++...|
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344555666666666666665431 22344 556666666666666666666666555444
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.61 E-value=0.009 Score=42.46 Aligned_cols=69 Identities=9% Similarity=-0.069 Sum_probs=50.4
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 180 EPSEEHYSIMVEALGRAGM---FEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 180 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
+.|...+..+..++...+. .++|..++++++...| ++.....+...+.+.|++++|...|+++.+.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456666667766654443 6788888888777666 4667777777888888888888888888887764
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.58 E-value=0.012 Score=54.76 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=73.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHH----cC-CCCC-HhH
Q 047393 119 ISARVNHGHPSEALDLFKDKQWR---YTSMN----PTTFRSALKAYALMGLVGEAYRLFLSMEEV----YH-IEPS-EEH 185 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~g-~~p~-~~~ 185 (373)
+..+.+.|++++|++++++..+. -+.|+ ..+++.+..+|...|++++|+.++++.... +| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55677889999999999998753 23343 358899999999999999999999987642 22 1233 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 186 YSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
++.|...|...|++++|..++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998764
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.43 E-value=0.11 Score=46.63 Aligned_cols=75 Identities=12% Similarity=0.025 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 047393 144 SMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRT 221 (373)
Q Consensus 144 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (373)
+.+..+|..+...+...|++++|...+++.... .|+...|..+-..+.-.|+.++|.+.|++++...|...+|.-
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence 445566666655555567777777777776544 366666656666666677777777777766666666655443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.30 E-value=0.045 Score=42.53 Aligned_cols=85 Identities=13% Similarity=0.014 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHhhCCCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAG---MFEEVLEFIKGIVPGK-L--CPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~li~~~~~~g~~~~A~ 236 (373)
+..+.+-|.+.... | .++..+.-.+.-++++.+ +++++..+|++.++.. | +...+..|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555554332 2 356667767777777777 5557887777755544 5 3456666777889999999999
Q ss_pred HHHHHHhccCCCC
Q 047393 237 YALDKLLELDPGM 249 (373)
Q Consensus 237 ~~~~~m~~~~P~~ 249 (373)
+.++.+++++|++
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999988865
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.30 E-value=0.0095 Score=55.37 Aligned_cols=64 Identities=6% Similarity=-0.126 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC---CC-HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 112 SLSWTFIISARVNHGHPSEALDLFKDKQWR---YTS---MN-PTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~---p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
..+++.|..+|...|++++|+.++++.++. -.. |+ ..+++.+...|...|++++|..++++..+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 356666777777777777777777665432 112 22 34677777777777777777777776543
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.87 E-value=0.021 Score=41.36 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 184 EHYSIMVEALGRAGMFEEVLEFIKGIVPG--------KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.-+..|...+.+.|+++.|...|+.++.. .+....+..|..++.+.|++++|...++++.+++|++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 33444555555555555555555554330 1234566666667777777777777777777666654
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.69 E-value=0.13 Score=51.53 Aligned_cols=154 Identities=12% Similarity=-0.041 Sum_probs=99.8
Q ss_pred cCCCchHHHHH-HHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 57 LNPILLNVGTQ-AQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 57 ~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
...+++++|.+ ++.. + |+......++..+.+.|.+++|.++.+.- . .-.......|++++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~----~----~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ----D----QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH----H----HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc----c----hheehhhhcCCHHHHHHHH
Confidence 34677888766 4411 1 21222377888889999999999877431 1 1123346789999999886
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 047393 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLC 215 (373)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (373)
+.+ .+...|..+...+.+.|+++.|.+.|..+ +. |..+...|...|+.+...++-+.++. ..+
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~-~~~ 738 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAET-TGK 738 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHH-TTC
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHH-cCc
Confidence 543 47889999999999999999999999987 32 33455555556666655444443222 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 216 PLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
++....++.+.|++++|.+++.++.+
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 23344455667777777777766554
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.29 E-value=0.16 Score=39.36 Aligned_cols=85 Identities=8% Similarity=0.027 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHhHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHH
Q 047393 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMG---LVGEAYRLFLSMEEVYHIEP--SEEHYSIMVEALGRAGMFEEVL 203 (373)
Q Consensus 129 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~ 203 (373)
..+.+-|.+..+.|. ++..+-..+.-++++++ +++++..+++...+. . .| ....+-.|--+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445566666666553 78888888888888888 666999999998776 2 35 3445556677889999999999
Q ss_pred HHHHhhCCCCCCH
Q 047393 204 EFIKGIVPGKLCP 216 (373)
Q Consensus 204 ~~~~~~~~~~p~~ 216 (373)
+.++.+++++|+.
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999988888843
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.15 E-value=0.086 Score=37.96 Aligned_cols=59 Identities=8% Similarity=-0.115 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 115 WTFIISARVNHGHPSEALDLFKDKQWRY------TSMNPTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|..++++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3344555555555555555555543320 0122334444444444445555554444444
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.90 E-value=0.29 Score=36.53 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHhhCCCC-C--CHHHHHHHHHHHHHcCCHHH
Q 047393 161 GLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEE---VLEFIKGIVPGK-L--CPLIWRTLLLSSRVHGDMKL 234 (373)
Q Consensus 161 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~li~~~~~~g~~~~ 234 (373)
..+..+.+-|...... | .|+..+--.+.-++.+.....+ +..+++...+.. | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555554333 3 2666666666667777766655 777888766644 4 23455556678889999999
Q ss_pred HHHHHHHHhccCCCC
Q 047393 235 AKYALDKLLELDPGM 249 (373)
Q Consensus 235 A~~~~~~m~~~~P~~ 249 (373)
|.+.++.+++.+|++
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999988865
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.50 E-value=0.22 Score=35.01 Aligned_cols=64 Identities=8% Similarity=-0.061 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 111 NSLSWTFIISARVNHGH---PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 111 d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
|...+..+..++...++ .++|..++++..+.. +-+..+...+-..+.+.|++++|...|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555443332 456666666655542 22344455555555566666666666666543
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.81 E-value=0.14 Score=44.32 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHHhc-----CCHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCC
Q 047393 183 EEHYSIMVEALGRA-----GMFEEVLEFIKGIVPGKLC--PLIWRTLLLSSRVH-GDMKLAKYALDKLLELDP 247 (373)
Q Consensus 183 ~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~p~--~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~P 247 (373)
...|..+...|.+. |+.++|.+.|++++.+.|+ ..++......+++. |+.++|.+.+++.+..+|
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34566666666663 6666666666666666662 55666666666653 666666666666666443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.75 E-value=1.5 Score=34.84 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=59.1
Q ss_pred HhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047393 92 SRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFL 171 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 171 (373)
.+.|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|.-.|+.+.-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 3445555555555444 2445555555555555665555555554432 1222333333455544444433
Q ss_pred HhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 172 SMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 172 ~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
....+ | + ++.-...+.-.|+++++.++|.+ ....|.. .-.....|..+.|.++.+.+
T Consensus 85 iA~~~-g---~---~n~af~~~l~lGdv~~~i~lL~~-~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 85 IAQTR-E---D---FGSMLLNTFYNNSTKERSSIFAE-GGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHT-T---C---HHHHHHHHHHHTCHHHHHHHHHH-TTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHC-c---c---HHHHHHHHHHcCCHHHHHHHHHH-CCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 33222 1 1 23333444455666666666666 3321111 11112245666666666554
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.73 E-value=2.1 Score=33.99 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=87.1
Q ss_pred HcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 047393 56 CLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLF 135 (373)
Q Consensus 56 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 135 (373)
..+.|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|.+... +..+.-.|.-.|+.++-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 34678999999887765 4678899999999999999999999988763 444555566677777665554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
+.....| -++.....+...|+++++.++|.+. |.-|.... .....|..+.|.++.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA~~------~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPLAYA------VAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHH------HHHHTTCHHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHHHHH------HHHHcCcHHHHHHHHHH
Confidence 4444443 2455556667789999999998765 32232211 11225777788888877
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.22 E-value=2.2 Score=32.86 Aligned_cols=102 Identities=8% Similarity=0.020 Sum_probs=53.7
Q ss_pred CChhHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHccCCHHHHHHHHHHhHHH
Q 047393 110 KNSLSWTFIISARVNHGHP------SEALDLFKDKQWRYTSMNPT----TFRSALK---AYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 110 ~d~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~m~~~ 176 (373)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...+++++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3566666666666666776 6666666665553 444321 1111100 012235666667777666443
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 047393 177 YHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKL 214 (373)
Q Consensus 177 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 214 (373)
+-.- ...|.....--.+.|++.+|.+++.+++...|
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 1111 45555555555566666666666666554333
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.81 E-value=3.3 Score=31.35 Aligned_cols=119 Identities=12% Similarity=0.079 Sum_probs=81.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC----------------CCCHhHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI----------------EPSEEHYS 187 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~----------------~p~~~~~~ 187 (373)
-.|..++..++..+..... +..-||-+|.-...+-+-+-..++++.+-+-+.+ ..+...++
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd 95 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 95 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHH
Confidence 4566666666666665542 4555555555555555555555555544222211 12345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 047393 188 IMVEALGRAGMFEEVLEFIKGIVP-GKLCPLIWRTLLLSSRVHGDMKLAKYALDKLLEL 245 (373)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 245 (373)
..++.+...|+-++-.++....+. ..|++...-.+..||.+.|+..+|.+++.++-+.
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 777888889999999999888433 6788999999999999999999999999998774
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.76 E-value=3.3 Score=31.32 Aligned_cols=139 Identities=8% Similarity=-0.038 Sum_probs=85.7
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHH
Q 047393 22 IKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDAD 101 (373)
Q Consensus 22 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 101 (373)
.-.|.+++..++..+.... .+..-||-++.-....-+.+-..++++..-+ -.| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHH
Confidence 3456777777777666653 2334455555444444444444444443321 112 23455555555
Q ss_pred HHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC
Q 047393 102 LAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI 179 (373)
Q Consensus 102 ~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~ 179 (373)
..+-.+.. +....+.-++.....|+-++-.+++..+.. +.+|+......+.+||.+.|+..+|.+++.+..+. |+
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 55544432 334456667788888888888888888544 34778888888889999999999998888888665 54
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.35 E-value=0.54 Score=35.08 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHhHHHcCCCC--CHhHHHHHHHHHHhcCCHHHH
Q 047393 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGE---AYRLFLSMEEVYHIEP--SEEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 128 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A 202 (373)
...+.+-|.+....|. |+..+-..+.-++.++.+... +..+++.+.+. + .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555665555553 777777777778888887766 88888887553 1 24 223333566788899999999
Q ss_pred HHHHHhhCCCCCC
Q 047393 203 LEFIKGIVPGKLC 215 (373)
Q Consensus 203 ~~~~~~~~~~~p~ 215 (373)
.+.++.+++..|+
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 9999997777774
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.16 E-value=1.4 Score=40.14 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH----HcCCCCCHhH
Q 047393 118 IISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE----VYHIEPSEEH 185 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~ 185 (373)
++..+...|++++|...+..+.... +-+...+..+|.++.+.|+..+|.+.|+...+ +.|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444555666666666666555442 44566666666666666666666666665432 3466665543
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.03 E-value=1.1 Score=38.67 Aligned_cols=78 Identities=10% Similarity=-0.099 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcCCCCC---HHHHHHHHHHHcC-----CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhc-CCHH
Q 047393 28 EMVHELLERIQLCCGFID---SYSICDILNSCLN-----PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRC-GKID 98 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~ 98 (373)
..|..++++..+ +.|+ ...|..+...|.+ .|+.+.|.+.|++.++.+-.-+..++......+++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 344444444444 3344 2344444444544 255555555555555443111244444444444442 4444
Q ss_pred HHHHHHccC
Q 047393 99 DADLAFKST 107 (373)
Q Consensus 99 ~A~~~~~~m 107 (373)
+|.+.+++.
T Consensus 258 ~a~~~L~kA 266 (301)
T 3u64_A 258 GFDEALDRA 266 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 235
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.93 E-value=3.1 Score=29.38 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=65.4
Q ss_pred CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 047393 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK 138 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 138 (373)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3457888888888877653 33333334556788999999999999999999999987764 5778888888888788
Q ss_pred HHcCCCCCHHHHHH
Q 047393 139 QWRYTSMNPTTFRS 152 (373)
Q Consensus 139 ~~~g~~p~~~t~~~ 152 (373)
..+| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 455555543
No 236
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.68 E-value=3.3 Score=29.29 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 047393 59 PILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDK 138 (373)
Q Consensus 59 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 138 (373)
....++|..+-+.+...|. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3457888888888877653 33333334556788999999999999999999999988765 4667788888877777
Q ss_pred HHcCCCCCHHHHHH
Q 047393 139 QWRYTSMNPTTFRS 152 (373)
Q Consensus 139 ~~~g~~p~~~t~~~ 152 (373)
..+| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 455555543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.44 E-value=3.5 Score=40.80 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047393 195 RAGMFEEVLEFIKGIVPGKL-CPLIWRTLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (373)
..|+++-|+++-+++....| +-.+|..|..+|...|+++.|.-.+.-
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 34444444444444443334 234455555555555555554444443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.31 E-value=2 Score=33.05 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHccCCH------HHHHHHHHHhHHHcCCCCCH-hHHHHHHH------HHHhcCCHHHHHHHHHhhCCC
Q 047393 146 NPTTFRSALKAYALMGLV------GEAYRLFLSMEEVYHIEPSE-EHYSIMVE------ALGRAGMFEEVLEFIKGIVPG 212 (373)
Q Consensus 146 ~~~t~~~ll~~~~~~g~~------~~a~~~~~~m~~~~g~~p~~-~~~~~li~------~~~~~g~~~~A~~~~~~~~~~ 212 (373)
|..+|-..+...-+.|++ +...++|++... .++|+. ..|...|. .+...+++++|.++|+.+...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566777777777777777 788888888865 457753 12222222 123358999999999986441
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 213 -KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 213 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
+.=...|-....-=.+.|++..|.+++...+++.|..
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1126677777777789999999999999999977643
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.72 E-value=2.1 Score=30.42 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH
Q 047393 129 SEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE 191 (373)
Q Consensus 129 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 191 (373)
-+..+-++.+....+.|+.....+.+.||.+.+++..|.++++.++.+. .+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 3455556666666788999999999999999999999999998886543 444556777664
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.89 E-value=1.8 Score=30.73 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=44.7
Q ss_pred CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 047393 26 DYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 26 ~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
+.-++.+-++.+....+.|++....+.+++|.|.+++..|.++++-.+.. +.....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455666666666778888888888888888888888888888877443 2334556766654
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.52 E-value=17 Score=33.42 Aligned_cols=186 Identities=12% Similarity=0.066 Sum_probs=119.6
Q ss_pred CCHhHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCCCchhHH--HHHHHHhHhcCC
Q 047393 25 KDYEMVHELLERIQLC-----CGFIDSYSICDILNSCLNPILLNVGTQAQAYMT-KRGLISHPAVG--NCLININSRCGK 96 (373)
Q Consensus 25 g~~~~A~~l~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~--~~li~~~~~~g~ 96 (373)
|+++.|++.+..+.+. ...-.......++..|...++++...+.+..+. ++|..+...+. +.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888877666542 133345567888999999999999888777664 44543333221 223333333333
Q ss_pred HH--HHHHHHccCC---CC-------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHc
Q 047393 97 ID--DADLAFKSTP---EK-------NSLSWTFIISARVNHGHPSEALDLFKDKQWR--YTSMN---PTTFRSALKAYAL 159 (373)
Q Consensus 97 ~~--~A~~~~~~m~---~~-------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~~~~~ 159 (373)
.+ .-..+.+... +. .......|...|...|++.+|.+++.++... |..+. ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 32 2333444332 11 1233456788899999999999999998542 32222 2466777888999
Q ss_pred cCCHHHHHHHHHHhHHH-cC--CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 047393 160 MGLVGEAYRLFLSMEEV-YH--IEPS--EEHYSIMVEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 160 ~g~~~~a~~~~~~m~~~-~g--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (373)
.+++..|..++..+... .. ..|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999887421 11 2222 3566777888888899999988887743
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.47 E-value=3.2 Score=37.67 Aligned_cols=57 Identities=11% Similarity=-0.087 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 047393 50 CDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107 (373)
Q Consensus 50 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 107 (373)
..++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|++.|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334455556666666666666655443 345556666666666666666666666544
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.78 E-value=19 Score=33.14 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=115.5
Q ss_pred CchHHHHHHHHHHHHc-----CCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHH----HHhCCC
Q 047393 60 ILLNVGTQAQAYMTKR-----GLISHPAVGNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISA----RVNHGH 127 (373)
Q Consensus 60 ~~~~~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~----~~~~g~ 127 (373)
+++++|.+.+-.+.+. ...........++..+.+.|+++...+.+..+.+. -..+-..++.. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6778887777666543 23445667888999999999999887766544322 11222233332 222333
Q ss_pred hHHH--HHHHHHHH--HcC-CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHc-CCCCC---HhHHHHHHHHHHh
Q 047393 128 PSEA--LDLFKDKQ--WRY-TSM---NPTTFRSALKAYALMGLVGEAYRLFLSMEEVY-HIEPS---EEHYSIMVEALGR 195 (373)
Q Consensus 128 ~~~A--~~l~~~m~--~~g-~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-g~~p~---~~~~~~li~~~~~ 195 (373)
.+.. ..+.+... ..| +-. .......+...+-..|++.+|..++..+.... |..+. +..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3221 11221111 011 111 12233567778889999999999999986543 22222 3567778889999
Q ss_pred cCCHHHHHHHHHhhC----CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 196 AGMFEEVLEFIKGIV----PGKLCP----LIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 196 ~g~~~~A~~~~~~~~----~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+++.+|..++.++- ...+++ ..+..++..+...+++.+|.+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999988731 122322 5667777788889999999988887765
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.64 E-value=16 Score=38.33 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=64.5
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCCC--------------------------ChhHHHHHHHHHHhCCChHHHHH
Q 047393 80 HPAVGNCLININSRCGKIDDADLAFKSTPEK--------------------------NSLSWTFIISARVNHGHPSEALD 133 (373)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------------d~~~~~~li~~~~~~g~~~~A~~ 133 (373)
+...--.+..+|..+|++++|.+.|.+.... -..-|.-++..|-+.|.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3333334455677777787877777654310 01124556666667777777766
Q ss_pred HHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 134 LFKDKQWRYTSMNP----TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 134 l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
+-+...+..-.-+. ..|..++.++...|++++|...+-.+... ..-......||..+|..|..+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChh
Confidence 65554443211111 14566677777777777777766665322 222344455565556555444
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.10 E-value=5.5 Score=29.84 Aligned_cols=69 Identities=13% Similarity=0.028 Sum_probs=36.0
Q ss_pred CCHhHHHHHHHHHHhcCCH---HHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 181 PSEEHYSIMVEALGRAGMF---EEVLEFIKGIVPGKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 181 p~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
|+..+--.+.-++.+.... .++..++++..+..| ....+.-|.-|+.+.|++++|.+..+.+.+.+|++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3443333344444444333 234555544333234 13445555566667777777777777777766654
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.17 E-value=11 Score=29.42 Aligned_cols=122 Identities=9% Similarity=0.012 Sum_probs=55.3
Q ss_pred cCCCCchhHHH--HHHHHhHhcCCHHHHHHHHccCC-----CCCh-------hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047393 75 RGLISHPAVGN--CLININSRCGKIDDADLAFKSTP-----EKNS-------LSWTFIISARVNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 75 ~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~-----~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 140 (373)
.|+.|....|+ .-+..+...|.++.|+-+.+.+. .+++ .+...+.+++...|++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555444333 23555666777777766655433 2221 2445556667777777777777776533
Q ss_pred c-CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 141 R-YTSMNP-TTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 141 ~-g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
. ..-|.. .+..++- .....+ ......++...---+-.+|.+.|+.++|+.+++. ++
T Consensus 92 ~~k~l~k~~s~~~~~~---~~ss~p-----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG---NSASTP-----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-IP 149 (167)
T ss_dssp HHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-SC
T ss_pred HHHHHhcCCCcccccc---ccCCCc-----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-CC
Confidence 2 111111 1111110 000000 0011223334444566777788888888888888 65
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.67 E-value=7.9 Score=29.10 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH
Q 047393 130 EALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 130 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 192 (373)
+...-++.+....+.|+.....+.+.+|.+.+++..|.++++-++.+ +.+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 44455556666678899999999999999999999999999998654 44556677777653
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.31 E-value=41 Score=33.26 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCc-hHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC-HHHHHHHHc-----------cCCCCChhH-
Q 047393 49 ICDILNSCLNPIL-LNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK-IDDADLAFK-----------STPEKNSLS- 114 (373)
Q Consensus 49 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~-----------~m~~~d~~~- 114 (373)
..+++..+...++ .+.|..+++.+.+....-+.....+++..+.+.++ --+|.+++. .+...+...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 4556666666666 57899999998776422222233444444433332 123333332 222233211
Q ss_pred ----H-HHHH----HHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 115 ----W-TFII----SARVNHGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 115 ----~-~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
+ ..|+ .-+...|+++-|+++-++.... .|+ -.||..|..+|.+.|+++.|+-.+..+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 1122 2345678888888888877665 454 568888888888888888888887776
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.97 E-value=23 Score=37.02 Aligned_cols=147 Identities=8% Similarity=-0.040 Sum_probs=100.4
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--------------------
Q 047393 86 CLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSM-------------------- 145 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------------------- 145 (373)
.++..+.+.+..+.|.++..-.. .+...--.+..+|...|++++|.+.|++... |+.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccc
Confidence 45556666777777777655444 3444445667788899999999999977521 1110
Q ss_pred ---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC-C--HhHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHH
Q 047393 146 ---NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP-S--EEHYSIMVEALGRAGMFEEVLEFIKGIVP-GKLCPLI 218 (373)
Q Consensus 146 ---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~ 218 (373)
-..-|..++..+-+.+.++.+.++-+...+..+-.+ + ...|..+...+...|++++|...+-. ++ ..--...
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~-~pd~~~r~~c 973 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV-LSTTPLKKSC 973 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH-HHHSSSCHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh-CCCHHHHHHH
Confidence 123467788888888998888888776655422221 1 13678889999999999999998876 43 2234577
Q ss_pred HHHHHHHHHHcCCHHHH
Q 047393 219 WRTLLLSSRVHGDMKLA 235 (373)
Q Consensus 219 ~~~li~~~~~~g~~~~A 235 (373)
...|+..++..|..+.-
T Consensus 974 Lr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhCCChhhh
Confidence 88888888888776554
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.19 E-value=19 Score=27.35 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=43.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHH---HHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 180 EPSEEHYSIMVEALGRAGMFE---EVLEFIKGIVPGKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 180 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
.|+..+--.+.-++.+....+ ++..+++...+..| ......-|.-++.+.|++++|.+..+.+++.+|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 345544444555555554433 45555555443334 23445556668888889999999888888888765
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.13 E-value=11 Score=28.27 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 65 GTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 65 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
..+-++.+....+.|++.+..+.+.++.|.+++..|.++|+.++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.04 E-value=18 Score=27.05 Aligned_cols=71 Identities=3% Similarity=-0.068 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHhHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 143 TSMNPTTFRSALKAYALMGL---VGEAYRLFLSMEEVYHIEP--SEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 143 ~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
-.|+..|--...-++.++.+ ...+..+++.+.+. + | .....--|.-++.+.|++++|.+..+.+++..|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 35666666566666666654 45688888888665 2 4 23444466678899999999999999988888854
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.47 E-value=23 Score=27.57 Aligned_cols=67 Identities=6% Similarity=-0.178 Sum_probs=44.3
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCCH-------HHHHHHHHHHcCCCchHHHHHHHHHHH
Q 047393 7 ISDVEIPWNLLLKACIKAKDYEMVHELLERIQLC-CGFIDS-------YSICDILNSCLNPILLNVGTQAQAYMT 73 (373)
Q Consensus 7 ~~p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~ 73 (373)
|+-+..++-.-+..+...|.++.|.-+.+.+... +..|+. .++..+..++...+++..|...|++.+
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455556678888899999998887775542 123332 245666778888899999999998864
No 254
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.74 E-value=12 Score=27.82 Aligned_cols=65 Identities=20% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKN---SLSWTFIISARVNHGH--PSEALDLFKDKQWRYTSMNP 147 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 147 (373)
..+.++.-|...|+.++|.+.++++..|. ..+..++..++-+.+. .+.+..++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34567888888999999999999988662 3455566666666542 34567777777777654433
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.41 E-value=51 Score=28.65 Aligned_cols=79 Identities=13% Similarity=-0.050 Sum_probs=45.2
Q ss_pred cCCCchHHHHH----HHHHHHHcCCCCchhHHHHHHHHhHhcCC--------HHHHHHHHccC---CCCChhHHHHHHHH
Q 047393 57 LNPILLNVGTQ----AQAYMTKRGLISHPAVGNCLININSRCGK--------IDDADLAFKST---PEKNSLSWTFIISA 121 (373)
Q Consensus 57 ~~~~~~~~a~~----~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m---~~~d~~~~~~li~~ 121 (373)
.+.|+...|-. +.+-..+.+++++...-.-++..+..... +++|.+.=.+. +..|+..+..+...
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 44555544443 34445566777777777777766655321 12222222111 22366777777788
Q ss_pred HHhCCChHHHHHHH
Q 047393 122 RVNHGHPSEALDLF 135 (373)
Q Consensus 122 ~~~~g~~~~A~~l~ 135 (373)
|.+.|++.+|..-|
T Consensus 144 ~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 144 LLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HhhcCCHHHHHHHH
Confidence 88888888776655
No 256
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=71.13 E-value=16 Score=29.58 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhH
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSY---SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININS 92 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 92 (373)
+...++.|+.+.+..+++.+.+.|..++.. -.+. +...+..|+.+ +++.+.+.|..++... ..+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 344566777777777776666655444322 1222 23333445543 3344445565544321 122334444
Q ss_pred hcCCHHHHHHHHccC
Q 047393 93 RCGKIDDADLAFKST 107 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m 107 (373)
+.|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 556665555555543
No 257
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=71.06 E-value=36 Score=26.75 Aligned_cols=141 Identities=11% Similarity=-0.001 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
++..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-...+.++.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALG 132 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344444444445555554444444444455556555556666666666543 3333333332 345555555666666
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHG 230 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g 230 (373)
+.|..+.. ..+..+.. .++..+-...+.++.+.|.. ++...+..++. .++...-...+.++.+.+
T Consensus 133 ~~~~~~~~-~~L~~~l~----d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~-d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 133 EIGDERAV-EPLIKALK----DEDGWVRQSAADALGEIGGE-RVRAAMEKLAE-TGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHTCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHH-HCCHHHHHHHHHHHHHCC
T ss_pred HhCCHHHH-HHHHHHHc----CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 66654322 22222212 35556666666666666653 34444444343 455555555555555443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.05 E-value=9.9 Score=32.31 Aligned_cols=124 Identities=14% Similarity=0.076 Sum_probs=80.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 047393 120 SARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMF 199 (373)
Q Consensus 120 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 199 (373)
....+.|.+++|++....-.+.. +-|...=..++..+|-.|+++.|.+-++...+- .|+...-..+...+.++...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHH
Confidence 45668899999999888877764 557777788999999999999999999988543 56543322222222222111
Q ss_pred HHHHHHHHhh-CC--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCC
Q 047393 200 EEVLEFIKGI-VP--GKLCPLIWRTLLLSSR--VHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 200 ~~A~~~~~~~-~~--~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
. .++|..- .+ ......-...|+.+.. ..|+.++|..+-+++.+.-|..
T Consensus 81 R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 81 R--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp H--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred H--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1 2234320 11 2223344455666654 4699999999999998755544
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.60 E-value=32 Score=26.03 Aligned_cols=70 Identities=3% Similarity=-0.066 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHhHHHcCCCC-CH-hHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 047393 144 SMNPTTFRSALKAYALMGL---VGEAYRLFLSMEEVYHIEP-SE-EHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCP 216 (373)
Q Consensus 144 ~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~g~~p-~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (373)
.|+..|--...-++.++.+ ..++..+++.+.+. .| +. ...-.|.-++.+.|++++|.++.+.+++.+|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 5676666666666777665 45688888888665 34 23 333355678889999999999999877778843
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.96 E-value=39 Score=26.76 Aligned_cols=173 Identities=10% Similarity=-0.043 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 047393 44 IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARV 123 (373)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~ 123 (373)
+|...-...+.++++.+..+ +...+..+.+ .++..+-...+.++.+.|..+....+.+.+..+|...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56666666666666665533 3333333333 3566666667777777776555555556666777777777777888
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 203 (373)
+.|..+ +...+.++.+ .|+...-...+.++.+.|..+. ...+..+.+ .++..+-...+.++.+.+. .++.
T Consensus 107 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~~~ 176 (211)
T 3ltm_A 107 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK----DEDGWVRQSAADALGEIGG-ERVR 176 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hhHH
Confidence 777654 3444444443 4677777777777777777543 333333322 4677777778888888876 4456
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 047393 204 EFIKGIVPGKLCPLIWRTLLLSSRVHGD 231 (373)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~li~~~~~~g~ 231 (373)
..+..++. .++...-...+.++.+.+.
T Consensus 177 ~~L~~~l~-d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 177 AAMEKLAE-TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHH-HCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHhcCC
Confidence 66655454 5666666666666665543
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.37 E-value=61 Score=29.48 Aligned_cols=97 Identities=7% Similarity=-0.057 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHH--
Q 047393 114 SWTFIISARVNHGHPSEALDLFKDKQWRYTSMN--PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIM-- 189 (373)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-- 189 (373)
++..+..-|.+.|++++|.+.+.++...-..+. ...+-..++.+...+++..+...+........-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677888888888888888888876532332 4567777888888888888888888875432223333222221
Q ss_pred --HHHHHhcCCHHHHHHHHHhhC
Q 047393 190 --VEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 190 --i~~~~~~g~~~~A~~~~~~~~ 210 (373)
...+...+++.+|.+.|-++.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 122234677888877776543
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.69 E-value=61 Score=28.47 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=59.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDL----FKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
+|.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ ++...+.++++|.....-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445556677788888888765431 2234455555444333 344455667777766666666655
Q ss_pred ccCC--HHHHHHHHHHhH---HHcCCC--CCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047393 159 LMGL--VGEAYRLFLSME---EVYHIE--PSEEHYSIMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 159 ~~g~--~~~a~~~~~~m~---~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~ 206 (373)
.... ++. ..+.+.+. .++|-. -|+..-..+...|.+.+++.+|..-|
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4432 111 11222221 112322 24555566667777777777776655
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=68.61 E-value=0.095 Score=48.70 Aligned_cols=210 Identities=11% Similarity=0.037 Sum_probs=98.4
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLI 88 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 88 (373)
.|...|..+|....+.|.+++-...+...++..- ++..=+.|+-+|++.+++.+-++++ -.||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHH
Confidence 3444455555555555555555554432222211 2222234555555555443322222 124444444444
Q ss_pred HHhHhcCCHHHHHHHHccCCC------------------------CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 047393 89 NINSRCGKIDDADLAFKSTPE------------------------KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS 144 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~------------------------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 144 (373)
+-+...|.++.|.-+|..+.. .++.||..+-.+|...+.+.-|.-.--.+.- .
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---h 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---H 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---C
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---c
Confidence 444555555555544443321 1455666666666666665544222211110 0
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHhh---CCCC------C
Q 047393 145 MNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHI-EPSEEHYSIMVEALGRAGMFEEVLEFIKGI---VPGK------L 214 (373)
Q Consensus 145 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~------p 214 (373)
|| -...++..|-..|.+++-+.+++.-. |+ ......|+-|.-.|++- ++++-.+-++.- +.+. -
T Consensus 229 ad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 AD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp SS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred HH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11 11123444556666666666665442 43 24667777777777764 333333333321 2211 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 047393 215 CPLIWRTLLLSSRVHGDMKLAK 236 (373)
Q Consensus 215 ~~~~~~~li~~~~~~g~~~~A~ 236 (373)
....|.-++-.|..-..++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 2255677777777666666554
No 264
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=66.25 E-value=46 Score=26.19 Aligned_cols=151 Identities=10% Similarity=-0.049 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--------------C-HHHHHHHHH
Q 047393 93 RCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTS--M--------------N-PTTFRSALK 155 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--------------~-~~t~~~ll~ 155 (373)
-.|.+..++-++.....-+..-|.+| +|-+..++..|...++.+.+..+. | | +..|+.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 35677777766666543333334433 355667777777777777754443 1 2 345666677
Q ss_pred HHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH------------H--HhcC----CHHHHH--------HHHHhh
Q 047393 156 AYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA------------L--GRAG----MFEEVL--------EFIKGI 209 (373)
Q Consensus 156 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~------------~--~~~g----~~~~A~--------~~~~~~ 209 (373)
.|.+.|+.++|...+..-- |..|=..+...|+-- . .+.| .+.... +..++-
T Consensus 123 lltq~g~r~EaI~y~~~Sf---~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY 199 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRSF---GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKY 199 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhhc---CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHH
Confidence 7788888888888876542 222222222211100 0 0000 000111 233333
Q ss_pred CCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHhccCCC
Q 047393 210 VPGKLCPLIWRTLL--LSSRVHGDMKLAKYALDKLLELDPG 248 (373)
Q Consensus 210 ~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~P~ 248 (373)
+..-|...+|-.-- ..|...|..++...+|..+.+.+|.
T Consensus 200 ~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 200 MEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 44568887765543 4567899999999999999998884
No 265
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=64.67 E-value=11 Score=28.92 Aligned_cols=65 Identities=20% Similarity=0.140 Sum_probs=44.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKN---SLSWTFIISARVNHGH--PSEALDLFKDKQWRYTSMNP 147 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 147 (373)
..+.++.-|...|+.++|.+.++++..|. .++..++..++-+.+. .+.+..++..+...|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 34667888888999999999999987662 3455566666665432 34566777777766654433
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=62.77 E-value=80 Score=27.72 Aligned_cols=130 Identities=12% Similarity=0.012 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHH----HHHHHHHHHcCCCCchhHHHHHHH
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVG----TQAQAYMTKRGLISHPAVGNCLIN 89 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~m~~~g~~~~~~~~~~li~ 89 (373)
|-++..-|.+.+++++|++++-.-. ..+.+.|+...| .-+++-..+.++++|.....-|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4555556666666666666543211 112233443332 333344455666666666666666
Q ss_pred HhHhcCCHH-HHHHHHc----------cCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 90 INSRCGKID-DADLAFK----------STPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 90 ~~~~~g~~~-~A~~~~~----------~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
.+.....-+ .=.++.+ ..+.-|......+...|.+.+++.+|..-| + .|-.++..+|..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--i--lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--V--LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--T--TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--H--hcCCchHHHHHHHHHHHH
Confidence 665554311 1111222 122336666677777777777777776655 1 122333355555544444
Q ss_pred ccCC
Q 047393 159 LMGL 162 (373)
Q Consensus 159 ~~g~ 162 (373)
..+.
T Consensus 179 ~~~~ 182 (336)
T 3lpz_A 179 KQDE 182 (336)
T ss_dssp HTSC
T ss_pred HhcC
Confidence 4433
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.54 E-value=89 Score=28.15 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHh
Q 047393 118 IISARVNHGHPSEALDLFKDKQWRYTSMN-----PTTFRSALKAYALMGLVGEAYRLFLSM 173 (373)
Q Consensus 118 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m 173 (373)
++..|...|++.+|.+++.++.+.=-..| ...|..-+..|...+++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45555556666666555555543200111 123333444455555555555555554
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=62.32 E-value=31 Score=28.55 Aligned_cols=206 Identities=15% Similarity=0.067 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh--HHHHHHH
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQLCCGFIDSY---SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLIN 89 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~ 89 (373)
++.+...++.|+++.+..++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++.. ...+.+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHH
Confidence 34566677888876655544 455444322 1123344445566664 445555677666532 2234455
Q ss_pred HhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH------------HHHHH
Q 047393 90 INSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT------------FRSAL 154 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------------~~~ll 154 (373)
..++.|+.+-+..+++.-..+ |..-++.|. ..+..|+.+ +++.+.+.|..++... -.+.+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 566788888888877764433 322233333 334556654 4445555555544220 11334
Q ss_pred HHHHccCCHHHHHHHHHHhHHHcCCCCC---HhHHHHHHHHHHhcCCH---HHHHHHHHhhCCCCC---CHHHHHHHHHH
Q 047393 155 KAYALMGLVGEAYRLFLSMEEVYHIEPS---EEHYSIMVEALGRAGMF---EEVLEFIKGIVPGKL---CPLIWRTLLLS 225 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~p---~~~~~~~li~~ 225 (373)
...+..|+.+-+..+++.. |..++ ..-.+.+..+ +..|.. .+..+++-+ -...+ +..-. +.+..
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~-t~L~~ 225 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLD-HGADVNVRGERGK-TPLIL 225 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSC-CHHHH
T ss_pred HHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHH-cCCCCCCcCCCCC-cHHHH
Confidence 4455678877666666532 44332 2222333333 344442 334444433 22122 22222 23444
Q ss_pred HHHcCCHHHHHHHHH
Q 047393 226 SRVHGDMKLAKYALD 240 (373)
Q Consensus 226 ~~~~g~~~~A~~~~~ 240 (373)
.++.|+.+-+..+++
T Consensus 226 A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 226 AVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 456778776555554
No 269
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.73 E-value=35 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHh
Q 047393 16 LLLKACIKAKDYEMVHELLERIQL 39 (373)
Q Consensus 16 ~li~~~~~~g~~~~A~~l~~~m~~ 39 (373)
--++.+....++++|.+++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 347778888999999998887664
No 270
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.96 E-value=1.5e+02 Score=30.10 Aligned_cols=230 Identities=14% Similarity=-0.033 Sum_probs=118.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCC--C-----CCHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCCCchhHHH-
Q 047393 15 NLLLKACIKAKDYEMVHELLERIQLCCG--F-----IDSYSICDILNSCLNPIL-LNVGTQAQAYMTKRGLISHPAVGN- 85 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m~~~g~--~-----p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~- 85 (373)
..+--|.+.+|...++.+++.......- . +....-..+--+++-.|. -+++.+.+..++...- +......
T Consensus 415 AllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~Aa 493 (963)
T 4ady_A 415 SLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAA 493 (963)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 3344456677776778887776554311 0 111111222222222232 2455566665554321 1111122
Q ss_pred -HHHHHhHhcCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHH
Q 047393 86 -CLININSRCGKIDDADLAFKSTPE--KN-SLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFR---SALKAYA 158 (373)
Q Consensus 86 -~li~~~~~~g~~~~A~~~~~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~~~~ 158 (373)
+|...|.-.|+-+....++..+.+ .+ +.-.-++.-++.-.|+.+.+..+.+.+.... .| ..-|. ++.-+|+
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAya 571 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTT
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhc
Confidence 333345566777766666654432 22 2222333344557889998888888887641 22 22333 3345678
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHHcCCH-HHH
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWR--TLLLSSRVHGDM-KLA 235 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~-~~A 235 (373)
..|+.....+++..+.+. ...++.-...+--++.-.|+.+.+.++++.++. ..|+.+-. .+.-|....|.. .++
T Consensus 572 GTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~-~~d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK-SHNAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG-CSCHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred CCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCCcHHH
Confidence 899998888899888542 233333333333344456777777888776333 33443333 333333334433 567
Q ss_pred HHHHHHHhccCCCCcc
Q 047393 236 KYALDKLLELDPGMYV 251 (373)
Q Consensus 236 ~~~~~~m~~~~P~~y~ 251 (373)
..++..+.. +++.++
T Consensus 649 id~L~~L~~-D~d~~V 663 (963)
T 4ady_A 649 IDVLDPLTK-DPVDFV 663 (963)
T ss_dssp HHHHHHHHT-CSSHHH
T ss_pred HHHHHHHcc-CCCHHH
Confidence 777777754 444443
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.66 E-value=33 Score=31.29 Aligned_cols=115 Identities=8% Similarity=-0.040 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHcC-CCCc-hhHHHHHHHHhHhcCCHHHHHHHHccCCC------CChhHHHHHHHHHHhCCChHHHHH
Q 047393 62 LNVGTQAQAYMTKRG-LISH-PAVGNCLININSRCGKIDDADLAFKSTPE------KNSLSWTFIISARVNHGHPSEALD 133 (373)
Q Consensus 62 ~~~a~~~~~~m~~~g-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~d~~~~~~li~~~~~~g~~~~A~~ 133 (373)
+++-.+......+.. .... ..+...+...|.+.|++++|.+.|.++.. .-...+-.+|..+...+++..+..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344444444444422 2222 33667789999999999999999998763 235567778889999999999999
Q ss_pred HHHHHHH---cCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHHcC
Q 047393 134 LFKDKQW---RYTSMNPT----TFRSALKAYALMGLVGEAYRLFLSMEEVYH 178 (373)
Q Consensus 134 l~~~m~~---~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g 178 (373)
.+.+... .+-.|+.. .|..+ .+...+++..|...|-+....+.
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl--~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGI--HCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHH--GGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHH--HHHHhChHHHHHHHHHHHhccCC
Confidence 9988754 23333332 22222 23457899999998888766543
No 272
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=59.62 E-value=61 Score=25.33 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 79 SHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+..+.. .|+...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444444445555555555444445555555667766666777777777654 3444444443 468778788888888
Q ss_pred ccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047393 159 LMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYA 238 (373)
Q Consensus 159 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 238 (373)
+.|+.+....+.+.+ . .++..+-...+.++++.|..+ +...+..++. .++...-...+.++.+.|..+ +...
T Consensus 102 ~~~~~~~~~~L~~~l-~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~~-~~~~ 173 (201)
T 3ltj_A 102 QIGDERAVEPLIKAL-K----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-DEDGWVRQSAADALGEIGGER-VRAA 173 (201)
T ss_dssp HHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHH-HHHH
T ss_pred HhCcHHHHHHHHHHH-c----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHhCchh-HHHH
Confidence 888765444444433 2 567777888888999888754 5555555466 678888888888888888744 5555
Q ss_pred HHHHhc
Q 047393 239 LDKLLE 244 (373)
Q Consensus 239 ~~~m~~ 244 (373)
+..+.+
T Consensus 174 L~~~l~ 179 (201)
T 3ltj_A 174 MEKLAE 179 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 273
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=58.53 E-value=0.014 Score=54.08 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=46.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL 162 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 162 (373)
+|.-|..+..+.|++.+|++.| ++..|+..|..+|.+..+.|.+++-...+...++.. -+...=+.++.+|++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCc
Confidence 4444444444444444444322 112344444445555555555554444443333221 122222344444454444
Q ss_pred HHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 163 VGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
+.+-+++ =-.||..-...+.+-|...|.++.|.-+|..
T Consensus 132 L~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 132 LAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp SSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred HHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 3322111 1123443344444444444444444444444
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.95 E-value=1.4e+02 Score=28.81 Aligned_cols=113 Identities=11% Similarity=-0.078 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 047393 127 HPSEALDLFKDKQWRYTSMNPTTFRS----ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEV 202 (373)
Q Consensus 127 ~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 202 (373)
+++.|..++....+.+ ..+...... +.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6788888888876544 233333322 222333445244556666654332 34443444455555678999999
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 203 LEFIKGIVPGKL--CPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 203 ~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+.|+. |...+ ...-..=+.+++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~-l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLAR-LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHH-SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999 65332 233344456688889999999999999986
No 275
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=56.04 E-value=35 Score=27.32 Aligned_cols=85 Identities=8% Similarity=0.001 Sum_probs=40.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhHhc
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRC 94 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~ 94 (373)
.+...++.|+++....++..-...--.+|....+.|..+ +..|+.+ +++.+.+.|..++... ..+.+...++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA-CSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHH-HHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 355567788888777776653221112232223333333 3344543 3344445565554321 12233444555
Q ss_pred CCHHHHHHHHcc
Q 047393 95 GKIDDADLAFKS 106 (373)
Q Consensus 95 g~~~~A~~~~~~ 106 (373)
|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll~~ 95 (231)
T 3aji_A 84 GXDEIVKALLVK 95 (231)
T ss_dssp TCHHHHHHHHHT
T ss_pred CHHHHHHHHHHc
Confidence 666655555554
No 276
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.59 E-value=34 Score=25.29 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCCCchhHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI--LLNVGTQAQAYMTKRGLISHPAVG 84 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~ 84 (373)
.-+.+|.-|...|+.++|.+.++++..... -...+...+..++-+.+ ..+.+.+++..+.+.|+-+.....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 356789999999999999999999863111 12234555566666653 246677888888777755444333
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.50 E-value=52 Score=26.52 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHH
Q 047393 61 LLNVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFI 118 (373)
Q Consensus 61 ~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~l 118 (373)
...++..+|..|...|+-.. ...|......+-..|++.+|.++|+...+..+....-|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 35567777777766666444 33455556666666677777666665554443333333
No 278
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.21 E-value=62 Score=26.33 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHHHcCCCCCH-h-----HHHHHHHHHHhcCCHHHHHHHHHhhCC
Q 047393 163 VGEAYRLFLSMEEVYHIEPSE-E-----HYSIMVEALGRAGMFEEVLEFIKGIVP 211 (373)
Q Consensus 163 ~~~a~~~~~~m~~~~g~~p~~-~-----~~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (373)
++-|..+|+.+.+...+..+. . .--..+-.|.+.|.+++|.+++++.+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 455666777665543221111 0 111334567778888888888888666
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.76 E-value=22 Score=28.71 Aligned_cols=180 Identities=9% Similarity=-0.079 Sum_probs=95.5
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCC
Q 047393 53 LNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGH 127 (373)
Q Consensus 53 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~ 127 (373)
+...++.|+.+.+..+++.+.+.|..++... ..+.+...++.|+.+-+..+++.-..+ |..-++. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 3444667899888888888877776665432 234566667788988888888755433 2222233 333456677
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHh---HHHHHHHHHHhcCCHHH
Q 047393 128 PSEALDLFKDKQWRYTSMN---PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEE---HYSIMVEALGRAGMFEE 201 (373)
Q Consensus 128 ~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~---~~~~li~~~~~~g~~~~ 201 (373)
.+-+..+++.....++.++ ..-. +.+...+..|+.+-...+++. |..++.. ...+.+...++.|+.+-
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQETVQLLLER-----GADIDAVDIKSGRSPLIHAVENNSLSM 165 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCC-cHHHHHHHcCCHHHHHHHHHc-----CCCcccccccCCCcHHHHHHHcCCHHH
Confidence 6655555444321111221 1122 223334566777665555542 4444321 12234455567788887
Q ss_pred HHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047393 202 VLEFIKGIVPG-KLCPLIWRTLLLSSRVHGDMKLAKYALD 240 (373)
Q Consensus 202 A~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~ 240 (373)
+..+++.-... .++..-. +.+...+..|+.+-+..+++
T Consensus 166 v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 166 VQLLLQHGANVNAQMYSGS-SALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHTTCCTTCBCTTSC-BHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCCCCC-CHHHHHHHcCCHHHHHHHHh
Confidence 77777651111 1121222 22334456677765555554
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.92 E-value=16 Score=30.29 Aligned_cols=92 Identities=10% Similarity=-0.050 Sum_probs=52.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHc--CCCchHHHHHHHHHHHHcCC-------CCc
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSY-------SICDILNSCL--NPILLNVGTQAQAYMTKRGL-------ISH 80 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~-------~~~ 80 (373)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+. ..+
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3455677899999888888888777666533 2344444442 56777777666665433110 000
Q ss_pred h--hHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 81 P--AVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 81 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
. ....+.+...++.|+.+-+..+++.-.
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 0 011223444555677776666666443
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.56 E-value=55 Score=27.08 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=43.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHH
Q 047393 119 ISARVNHGHPSEALDLFKDKQWR--YTSM----NPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 192 (373)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---cCCHHHHHHHHHH
Confidence 45566667777777766665431 2221 1111122222222222223334444444 22 4455555566677
Q ss_pred HHhcCCHHHHHHHHHh
Q 047393 193 LGRAGMFEEVLEFIKG 208 (373)
Q Consensus 193 ~~~~g~~~~A~~~~~~ 208 (373)
+.+.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7788888888887755
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.17 E-value=88 Score=24.59 Aligned_cols=155 Identities=14% Similarity=0.010 Sum_probs=102.9
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047393 78 ISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAY 157 (373)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 157 (373)
.++..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+.++.. .+|...-...+.++
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 105 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3555555566666666666555555556666677777777778888887654 4444444443 46777778888888
Q ss_pred HccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047393 158 ALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237 (373)
Q Consensus 158 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 237 (373)
.+.|+.+....+.+.+ + .++..+-...+.++++.|..+ +...+..++. .++...-...+.++.+.+.. ++..
T Consensus 106 ~~~~~~~~~~~L~~~l-~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~-~~~~ 177 (211)
T 3ltm_A 106 GQIGDERAVEPLIKAL-K----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-DEDGWVRQSAADALGEIGGE-RVRA 177 (211)
T ss_dssp HHHCCGGGHHHHHHHT-T----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-CSSHHHHHHHHHHHHHHCSH-HHHH
T ss_pred HHhCcHHHHHHHHHHH-h----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHhCch-hHHH
Confidence 8888764443444333 2 578888888889999988755 5555555465 78888888888899888874 4555
Q ss_pred HHHHHhc
Q 047393 238 ALDKLLE 244 (373)
Q Consensus 238 ~~~~m~~ 244 (373)
.+..+.+
T Consensus 178 ~L~~~l~ 184 (211)
T 3ltm_A 178 AMEKLAE 184 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=50.55 E-value=1.2e+02 Score=25.78 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=72.1
Q ss_pred HHhHhcCCHHHHHHHHccCC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCH
Q 047393 89 NINSRCGKIDDADLAFKSTP--EK-NSLSWTFIISARVNHGHPSEALDLFKDKQWRY--TSMNPTTFRSALKAYALMGLV 163 (373)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~ 163 (373)
....+.|++++|++....-. +| |...-..|+..+|-.|+|+.|..-++...+.. ..|-..+|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 34667899999988776543 23 77777889999999999999999888877652 122334566666542
Q ss_pred HHHHHHHHHhHHHcCCCC-----CHhHHHHHHHHHHh--cCCHHHHHHHHHhhCC
Q 047393 164 GEAYRLFLSMEEVYHIEP-----SEEHYSIMVEALGR--AGMFEEVLEFIKGIVP 211 (373)
Q Consensus 164 ~~a~~~~~~m~~~~g~~p-----~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~ 211 (373)
..-.++... +-.| ...-...++.+... .|+.++|.++-+.+..
T Consensus 79 ----~~R~~vfaG-~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 ----QARKDFAQG-AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHTTS-CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 222222121 2222 23344566666654 5999999988877544
No 284
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.52 E-value=42 Score=25.63 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCCCchhH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI--LLNVGTQAQAYMTKRGLISHPAV 83 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~ 83 (373)
.-+.+|.-|...|+.++|.+.++++..... -...+...+..++-+.+ ..+.+..++..+.+.|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 357789999999999999999999863111 12334555556666542 25567788888877775544333
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.40 E-value=1.4e+02 Score=26.54 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=35.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHh
Q 047393 149 TFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGM--FEEVLEFIKG 208 (373)
Q Consensus 149 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~ 208 (373)
....+|.=|...|+.++|.+.++++ .. ..--...+..++..++-+.+. -+...+++..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL-~~-p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~ 278 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKEL-EV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKS 278 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH-CC-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHc-cC-CcchHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 4577788888888888888888887 21 111123445566666665443 2345566655
No 286
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=49.74 E-value=1.9e+02 Score=29.44 Aligned_cols=191 Identities=13% Similarity=0.062 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHhcCCCCCHHH--HH--HHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 047393 28 EMVHELLERIQLCCGFIDSYS--IC--DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLA 103 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~~~--~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 103 (373)
+++.+.+..+.... +..+ .. +|-..++-.|+-+....++..+.+.. .-+..-+-++.-++.-.|+.+.+..+
T Consensus 471 eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 471 IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 45666666665431 2211 22 23334556777777777877766532 22222223333344456777777666
Q ss_pred HccCCC-CCh-hHHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHhHHH
Q 047393 104 FKSTPE-KNS-LSWT---FIISARVNHGHPSEALDLFKDKQWRYTSMNPTTFRSALK--AYALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 104 ~~~m~~-~d~-~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~m~~~ 176 (373)
.+.+.. .|. +-|. ++.-+|+-.|+.....++++.+.+. ++..+-...+- ++...|+.+.+.++++.+.+
T Consensus 547 i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~- 622 (963)
T 4ady_A 547 ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK- 622 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh-
Confidence 666542 333 2333 3445678889987777788888764 23333333333 33346776667777776633
Q ss_pred cCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 047393 177 YHIEPSEEHYSIMVEALGRAGMF-EEVLEFIKGIVPGKLCPLIWRTLLLSSRV 228 (373)
Q Consensus 177 ~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 228 (373)
...|.+..-.++.-+....|.. .+|.+++..+.. .+|..+-..-+.++..
T Consensus 623 -~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 623 -SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALSM 673 (963)
T ss_dssp -CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHHH
Confidence 2355555555555555555554 578888888444 6666555444545443
No 287
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=49.71 E-value=59 Score=22.20 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHH
Q 047393 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 67 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 131 (373)
.++..+.+.|+- +..-+..+-. .....+.|.++++.+.+++..+|..++.++.+.|...-|
T Consensus 26 ~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 455555555542 2222222222 245566777777777777777777777777766654433
No 288
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.63 E-value=1.4e+02 Score=26.12 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=37.6
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhCC-ChHHHHHHHHHHHHcCCC
Q 047393 84 GNCLININSRCGKIDDADLAFKSTPEKN---SLSWTFIISARVNHG-HPSEALDLFKDKQWRYTS 144 (373)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~d---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~ 144 (373)
...++.-|...|++++|...++++..|. ..+...+..++-+.. .-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4567888888999999999999998763 233333333333322 123445566666655543
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.73 E-value=22 Score=28.58 Aligned_cols=203 Identities=11% Similarity=0.020 Sum_probs=94.9
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH---HHHHHHHhHhcC
Q 047393 21 CIKAKDYEMVHELLERIQLCCGFIDSY--SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV---GNCLININSRCG 95 (373)
Q Consensus 21 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g 95 (373)
.++.|+++....++ +.|..++.. .-.+.+...++.|+.+-+ +.+.+.|..++... ..+.+...++.|
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 46678766654444 455444322 112234445566776544 44445555443221 234555666778
Q ss_pred CHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHH
Q 047393 96 KIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP---TTFRSALKAYALMGLVGEAYRL 169 (373)
Q Consensus 96 ~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~ 169 (373)
+.+-+..+++.-..+ |...++.+ ...+..|+.+ +++.+.+.|..++. .-.+.+..+..+ +......++
T Consensus 88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~ 161 (240)
T 3eu9_A 88 HLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRL 161 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHH
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHH
Confidence 888777777654332 22222333 3334556654 44444555554432 222333333333 332233333
Q ss_pred HHHhHHHcCCCCCHhH---HHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047393 170 FLSMEEVYHIEPSEEH---YSIMVEALGRAGMFEEVLEFIKGIVPG-KLCPLIWRTLLLSSRVHGDMKLAKYALDKL 242 (373)
Q Consensus 170 ~~~m~~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 242 (373)
+.+ .|..++... -.+.+...++.|+.+-+.-+++.-... .++..-. +.+....+.|+.+-+..+++..
T Consensus 162 L~~----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 162 LLT----FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHH----TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHh----cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhh
Confidence 322 244443221 123445556778877666666651111 1111111 2344445667776655555443
No 290
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.84 E-value=94 Score=23.70 Aligned_cols=48 Identities=8% Similarity=-0.047 Sum_probs=33.6
Q ss_pred HHHHHccCCCC-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 047393 100 ADLAFKSTPEK-----NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147 (373)
Q Consensus 100 A~~~~~~m~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 147 (373)
+.++|..|... -+.-|-.....+...|++.+|.++|+.-.+.+-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 56666655543 3455677777777888888888888888777777743
No 291
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.76 E-value=16 Score=22.91 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=18.4
Q ss_pred cCCHhHHHHHHHHHHhcC-CCCCHH
Q 047393 24 AKDYEMVHELLERIQLCC-GFIDSY 47 (373)
Q Consensus 24 ~g~~~~A~~l~~~m~~~g-~~p~~~ 47 (373)
.-+++.|+..|.++...| ++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 347899999999998765 666554
No 292
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.48 E-value=28 Score=24.24 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=27.6
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHH
Q 047393 95 GKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEA 131 (373)
Q Consensus 95 g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A 131 (373)
...+.|.++++.++++...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4567788888888777778888888888776766655
No 293
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=41.42 E-value=1.7e+02 Score=25.24 Aligned_cols=113 Identities=8% Similarity=-0.010 Sum_probs=65.1
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 047393 83 VGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISARVNHGHPSEALDL----FKDKQWRYTSMNPTTFRSALKAYA 158 (373)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 158 (373)
.|.++..-|.+.+++++|.+++... ...+.++|+...|.++ ++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666678888888888765432 2334556665555443 444556677777777776666655
Q ss_pred ccCCHH-HHHHHHHHhH---HHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047393 159 LMGLVG-EAYRLFLSME---EVYHI--EPSEEHYSIMVEALGRAGMFEEVLEFI 206 (373)
Q Consensus 159 ~~g~~~-~a~~~~~~m~---~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~ 206 (373)
.-..-+ .=.++.+.+. .+.|- .-|+.....+...|.+.|++.+|..-|
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 432111 1122222222 11122 126666777778888888888888755
No 294
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.77 E-value=56 Score=29.00 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQ 38 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~ 38 (373)
...++|.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 35677888888889888888887764
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.22 E-value=98 Score=23.12 Aligned_cols=63 Identities=10% Similarity=0.035 Sum_probs=42.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
+.+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 346677777665433 2334444455566788888888554 55567777778888899988865
No 296
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=38.96 E-value=1e+02 Score=21.79 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047393 194 GRAGMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKYAL 239 (373)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 239 (373)
...|++++|..+.+. .. .||...|-+|.. .+.|..+++..-+
T Consensus 50 mNrG~Yq~Al~l~~~-~c-~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 50 ANQGRYQEALAFAHG-NP-WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp HHTTCHHHHHGGGTT-CC-CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhcCC-CC-CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 344555555555554 33 455555444332 2444444444444
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.65 E-value=55 Score=28.35 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHH
Q 047393 15 NLLLKACIKAKDYEMVHELLERI 37 (373)
Q Consensus 15 n~li~~~~~~g~~~~A~~l~~~m 37 (373)
..+|.-|...|+.++|...++++
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34455555555555555555444
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.08 E-value=61 Score=25.08 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=39.8
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhHhcCC
Q 047393 19 KACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSRCGK 96 (373)
Q Consensus 19 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~ 96 (373)
...+..|+.+....++..-...--.+|..-.+.|..+ ++.|+.+ +++.+.+.|..++... ..+.+...++.|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3345677777776665432100001222223333333 3445543 4444556666655332 1233444556677
Q ss_pred HHHHHHHHcc
Q 047393 97 IDDADLAFKS 106 (373)
Q Consensus 97 ~~~A~~~~~~ 106 (373)
.+-+..+++.
T Consensus 85 ~~~~~~Ll~~ 94 (201)
T 3hra_A 85 TEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777766643
No 299
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=38.00 E-value=74 Score=23.68 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=10.0
Q ss_pred HHHHHHcCCHhHHHHHHH
Q 047393 18 LKACIKAKDYEMVHELLE 35 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~ 35 (373)
+...++.|+.+.+..+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334456677666655543
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.90 E-value=1.4e+02 Score=28.05 Aligned_cols=27 Identities=11% Similarity=0.427 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQ 38 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~ 38 (373)
+.+|.+++.|...+.++.|..+..+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 456666666666666666666666553
No 301
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.84 E-value=61 Score=26.66 Aligned_cols=207 Identities=10% Similarity=-0.053 Sum_probs=104.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHh
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDS---YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININ 91 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~ 91 (373)
.+...+..|+.+-+ +.+.+.|..|+. ...+.+.. .+..|+.+ +++.+.+.|..++... ..+.+...
T Consensus 42 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A 112 (285)
T 1wdy_A 42 PLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLL-AAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEA 112 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHH
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHH
Confidence 44555667776544 445555655443 22233333 33445554 4455556776665322 22345556
Q ss_pred HhcCCHHHHHHHHccCCCCChh-------------HHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCH---HHHHHHH
Q 047393 92 SRCGKIDDADLAFKSTPEKNSL-------------SWTFIISARVNHGHPSEALDLFKDKQWR-YTSMNP---TTFRSAL 154 (373)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~d~~-------------~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~---~t~~~ll 154 (373)
++.|+.+-+..+++.-..++.. -.+ .+...+..|+.+-+.. +.+. |..++. .-.+.+.
T Consensus 113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~g~t~l~ 187 (285)
T 1wdy_A 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGHVEVLKI----LLDEMGADVNACDNMGRNALI 187 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHTCHHHHHH----HHHTSCCCTTCCCTTSCCHHH
T ss_pred HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcCCHHHHHH----HHHhcCCCCCccCCCCCCHHH
Confidence 7788888888888765433211 112 3334445666554433 3333 443332 2223333
Q ss_pred HHHHccCCHHHHHHHHHHhHHHcCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHc
Q 047393 155 KAYALMGLVGEAYRLFLSMEEVYHIEPSEEH--YSIMVEALGRAGMFEEVLEFIKGIVPGKL---CPLIWRTLLLSSRVH 229 (373)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~ 229 (373)
.+ +..|+......+.+.+.+. |..++... -.+.+...++.|+.+-+..+++. ....+ |..-.+ .+...++.
T Consensus 188 ~a-~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~~~~g~t-~l~~A~~~ 263 (285)
T 1wdy_A 188 HA-LLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-EHIEINDTDSDGKT-ALLLAVEL 263 (285)
T ss_dssp HH-HHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-SSCCTTCCCTTSCC-HHHHHHHT
T ss_pred HH-HHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-cCCCccccCCCCCc-HHHHHHHc
Confidence 33 3455543344555555443 66654321 22445556778999888888874 22122 222222 23344566
Q ss_pred CCHHHHHHHHHH
Q 047393 230 GDMKLAKYALDK 241 (373)
Q Consensus 230 g~~~~A~~~~~~ 241 (373)
|+.+-+.-+++.
T Consensus 264 ~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 264 KLKKIAELLCKR 275 (285)
T ss_dssp TCHHHHHHHHHH
T ss_pred CcHHHHHHHHHc
Confidence 777665555554
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.57 E-value=63 Score=27.15 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=6.0
Q ss_pred HhcCCHHHHHHHHc
Q 047393 92 SRCGKIDDADLAFK 105 (373)
Q Consensus 92 ~~~g~~~~A~~~~~ 105 (373)
++.|+.+-+..+++
T Consensus 103 ~~~g~~~~v~~Ll~ 116 (285)
T 3kea_A 103 VDSGNMQTVKLFVK 116 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34444444444443
No 303
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=35.38 E-value=2.5e+02 Score=25.22 Aligned_cols=227 Identities=8% Similarity=-0.044 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCC---HHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCCchhH---
Q 047393 12 IPWNLLLKACIKAKDYEMVHELLERIQLC-CGFID---SYSICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAV--- 83 (373)
Q Consensus 12 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~---~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~--- 83 (373)
.+...|..-|.+.|+.++..+++.....- +.-|- ......++..+.... ..+.-.++..+.++..- -+..+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34566788899999999999998876542 11222 234677888887643 33433444443332210 11122
Q ss_pred ---HHHHHHHhHhcCCHHHHHHHHccCC----CCC-----hhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHH
Q 047393 84 ---GNCLININSRCGKIDDADLAFKSTP----EKN-----SLSWTFIISARVNHGHPSEALDLFKDKQWR--YTSMNPTT 149 (373)
Q Consensus 84 ---~~~li~~~~~~g~~~~A~~~~~~m~----~~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t 149 (373)
-.-|+..|...|++.+|.+++.++. +.| ...|-.-+..|...+++.++...+...... .+.|++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2368899999999999988887665 222 344666778899999999999999877543 23344433
Q ss_pred HHH--HHH--HHH-ccCCHHHHHHHHHHhHHHcCCC--C---CHhHHHHHHHHHHhcCCHHHHHHHHHh-h---CCCCCC
Q 047393 150 FRS--ALK--AYA-LMGLVGEAYRLFLSMEEVYHIE--P---SEEHYSIMVEALGRAGMFEEVLEFIKG-I---VPGKLC 215 (373)
Q Consensus 150 ~~~--ll~--~~~-~~g~~~~a~~~~~~m~~~~g~~--p---~~~~~~~li~~~~~~g~~~~A~~~~~~-~---~~~~p~ 215 (373)
-.. ... .+. ..+++..|...|-+..+.+.-. | +...|..|. +..- ++..+--.++.. . . ..|+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHc-CCHHHHHHHhcccccccc-CCcc
Confidence 322 222 244 6899999998887775544311 1 122332222 2222 232222232221 0 1 2566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 216 PLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 216 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
...+..++.++ ..+++.+...+++...
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHH
Confidence 66666666664 5668877777766543
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.81 E-value=1.8e+02 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=30.0
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047393 117 FIISARV---NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMG 161 (373)
Q Consensus 117 ~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 161 (373)
-+|+++. +..+++.|+-.+-+|++.| .|.-..=..++.+.-.-|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3455553 4678888999999999988 665555556666655544
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.61 E-value=48 Score=26.59 Aligned_cols=206 Identities=16% Similarity=0.127 Sum_probs=99.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhH
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDS---YSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININS 92 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 92 (373)
+...+..|+.+-+ +.+.+.|..++. ...+.+.. .+..|+.+.+ +.+.+.|..++... ..+.+...+
T Consensus 15 L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVDIC----HMLVQAGANIDTCSEDQRTPLME-AAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTCCCHHHH-HHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHHHH----HHHHHcCCCcCccCCCCCCHHHH-HHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 3445667776544 444555655443 22333333 3455666544 44456666554321 233455566
Q ss_pred hcCCHHHHHHHHccCC-C---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHHHH
Q 047393 93 RCGKIDDADLAFKSTP-E---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT--FRSALKAYALMGLVGEA 166 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~-~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a 166 (373)
..|+.+-+..+++.-. . ++..-++.+. ..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI-WATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HcCCHHHHHHHHhCCCCCcccCCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 7788888888877642 1 2222233333 334455544 4445555665543221 11233444556776654
Q ss_pred HHHHHHhHHHcCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047393 167 YRLFLSMEEVYHIEPSEEH--YSIMVEALGRAGMFEEVLEFIKGIVPG-KLCPLIWRTLLLSSRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 243 (373)
..+++ . |..++... -.+.+...++.|+.+-+.-+++.-... .+|..- .+-+......|+.+.+.++.+.+.
T Consensus 161 ~~Ll~----~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g-~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 161 EILLA----A-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG-ETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHHHT----T-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTS-CCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHH----c-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 44442 2 44443211 112344455677777666665541111 111111 122333445667777777766654
No 306
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=33.83 E-value=1.1e+02 Score=24.22 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=39.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH-----HHHHHHHhH
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV-----GNCLININS 92 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-----~~~li~~~~ 92 (373)
+...++.|+.+.+..+++.-.......|..-.+.|..+ +..|+.+ +++.+.+.|-.++... ..+.+...+
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS-VSFQAHE----ITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH-HHcCCHH----HHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 44456677777766666543322112333333333333 3445543 3444445552222221 123344445
Q ss_pred hcCCHHHHHHHHccC
Q 047393 93 RCGKIDDADLAFKST 107 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m 107 (373)
+.|+.+-+..+++.-
T Consensus 81 ~~~~~~~~~~Ll~~g 95 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRP 95 (228)
T ss_dssp HHCCHHHHHHHHSSS
T ss_pred HcCCHHHHHHHHhCC
Confidence 566666666666543
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.32 E-value=2.3e+02 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 047393 116 TFIISARVNHGHPSEALDLFKDKQ 139 (373)
Q Consensus 116 ~~li~~~~~~g~~~~A~~l~~~m~ 139 (373)
+.++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 445555555666666666665553
No 308
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.49 E-value=1.2e+02 Score=22.39 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=38.9
Q ss_pred HHHhcCCCCCHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047393 36 RIQLCCGFIDSYSICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96 (373)
Q Consensus 36 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 96 (373)
.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|----++.+.+.|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 46677887776543 3455555555 566789999999888766666655555666666654
No 309
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.76 E-value=1.3e+02 Score=24.07 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 047393 199 FEEVLEFIKGIVPGKLCP-------LIWRTLLLSSRVHGDMKLAKYALDKLLELDPGM 249 (373)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~P~~ 249 (373)
++.|+.+++. ++..-+. ..=-..+..|.+.|.+++|.+++++..+-.|++
T Consensus 94 LESAl~v~~~-I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 94 LESALMIWGS-IEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHHHTT-SCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 4567777777 5422221 112233456778888888888888877654433
No 310
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.70 E-value=1.1e+02 Score=19.97 Aligned_cols=61 Identities=11% Similarity=-0.061 Sum_probs=37.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047393 35 ERIQLCCGFIDSYSICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96 (373)
Q Consensus 35 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 96 (373)
+.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|-.-.+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777776654 34555665543 455677888888777655566666666666666553
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.38 E-value=1.2e+02 Score=23.20 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 047393 63 NVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122 (373)
Q Consensus 63 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~ 122 (373)
+.+..+|..|...|+-.. ...|..-...+-..|++.+|.++|+...+.++.....|...|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 348899999988887655 456777888888999999999999877766555555555444
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.17 E-value=1.2e+02 Score=22.68 Aligned_cols=61 Identities=11% Similarity=-0.032 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047393 35 ERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96 (373)
Q Consensus 35 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 96 (373)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|----++.+.+.|-
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 346677887776533 3444444455566788888888777655565555555666666654
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.80 E-value=1.7e+02 Score=21.94 Aligned_cols=63 Identities=6% Similarity=-0.044 Sum_probs=41.1
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 136 KDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 136 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 34566776655432 23445555556667788888888665 55667777777888899988865
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.63 E-value=82 Score=24.98 Aligned_cols=174 Identities=12% Similarity=0.017 Sum_probs=87.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSY----SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLINI 90 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~ 90 (373)
.+...+..|+.+-+.. +.+.|..++.. ..+. +...+..|+.+ +++.+.+.|..++... ..+.+..
T Consensus 45 ~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 115 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTP-LHWATRQGHLS----MVVQLMKYGADPSLIDGEGCSCIHL 115 (240)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCCh-hHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 4455567777655444 44445433321 2223 33334445554 4455556676665321 2234556
Q ss_pred hHhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHH
Q 047393 91 NSRCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT---FRSALKAYALMGLVG 164 (373)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~ 164 (373)
.++.|+.+-+..+++.-..+ |..-.+.+..+....+. .+..++ +.+.|..++... -.+.+...+..|+.+
T Consensus 116 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 191 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS-VDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS-STTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred HHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh-HHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHH
Confidence 67778888887777754432 33333444444434333 333333 344444433221 123455556778877
Q ss_pred HHHHHHHHhHHHcCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHh
Q 047393 165 EAYRLFLSMEEVYHIEPSEEHY--SIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 165 ~a~~~~~~m~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 208 (373)
-+..+++. |..++.... .+.+....+.|+.+-+.-+++.
T Consensus 192 ~v~~Ll~~-----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 192 VISLLLEA-----GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHH-----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 66555532 555543211 1334555677777766666655
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.24 E-value=1.8e+02 Score=23.26 Aligned_cols=92 Identities=15% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHhC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----HHHHHHHHHHhHHHcCCCCCHhHHHHH
Q 047393 118 IISARVNH---GHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGL-----VGEAYRLFLSMEEVYHIEPSEEHYSIM 189 (373)
Q Consensus 118 li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~~g~~p~~~~~~~l 189 (373)
+|+++.++ .+++.|+-.+-+|++.|-.|.-..=..++.+.-.-|. +..|...++.. +..|.+--.....-.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~-~~iG~PE~~i~Laqa 88 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF-TRVGAYEGERAIAQA 88 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-HHHCCcHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHhhC
Q 047393 190 VEALGRAGMFEEVLEFIKGIV 210 (373)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~ 210 (373)
+-.++.+-+...+...++.++
T Consensus 89 viyLA~aPKSNs~y~A~~~A~ 109 (201)
T 3bge_A 89 IIYLSVAPKSNAVYTAFNTAK 109 (201)
T ss_dssp HHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHH
No 316
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.90 E-value=1.3e+02 Score=23.29 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 047393 64 VGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122 (373)
Q Consensus 64 ~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~ 122 (373)
.+..+|..|...|+-.. ...|..-...+-..|++.+|.++|....+..+.....|-..+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~ 137 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQH 137 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 37788999998887665 456777788888899999999999877655544444444433
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.64 E-value=1.3e+02 Score=22.64 Aligned_cols=61 Identities=3% Similarity=-0.149 Sum_probs=37.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCC
Q 047393 35 ERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGK 96 (373)
Q Consensus 35 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 96 (373)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|----++.+.+.|-
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 34667787766543 33445555555667788899998877655666555555666666654
No 318
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.59 E-value=1.4e+02 Score=22.49 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=40.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047393 35 ERIQLCCGFIDSYSICDILNSCLNPI-LLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 35 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 97 (373)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|----++.+.+.|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346678888776543 3455555555 5667889999998877666666555556666666643
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.95 E-value=72 Score=24.64 Aligned_cols=121 Identities=14% Similarity=0.016 Sum_probs=58.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhH
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSY---SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININS 92 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~ 92 (373)
+...++.|+.+- ++.+.+.|..|+.. ..+.+. ..+..|+.+-+..+++. .+..++... ..+.+...+
T Consensus 43 L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~ 114 (201)
T 3hra_A 43 LNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYL-YAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAA 114 (201)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHH
T ss_pred HHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHHH
Confidence 334456677554 44455556555432 233333 33455676555444432 332332211 123344556
Q ss_pred hcCCHHHHHHHHccC-CC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 047393 93 RCGKIDDADLAFKST-PE---KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMN 146 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m-~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 146 (373)
+.|+.+-+..+++.- .. +|..-++.|..+.........-.++.+.+.+.|..|+
T Consensus 115 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 678888777777665 22 2333334444433322223333556666666666554
No 320
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=28.84 E-value=3.2e+02 Score=24.48 Aligned_cols=150 Identities=10% Similarity=-0.038 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCc---hHHHHHHHHHHHHcC----CCCchhH--HHHHHHHhHhcCCHHHHHHHHccCCC-CChhHHHHH
Q 047393 49 ICDILNSCLNPIL---LNVGTQAQAYMTKRG----LISHPAV--GNCLININSRCGKIDDADLAFKSTPE-KNSLSWTFI 118 (373)
Q Consensus 49 ~~~ll~~~~~~~~---~~~a~~~~~~m~~~g----~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~-~d~~~~~~l 118 (373)
-..++...|..|+ .++|.+.|+.....+ ++||... |..-+ + .-++-..+++.... .+..--..+
T Consensus 200 R~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~----~--~~~~~~~l~~~y~~s~~~~ek~~l 273 (419)
T 3rjo_A 200 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----Q--STEGWDFLYSKYQFSLSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHT----T--SHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeee----C--CHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3456666677766 567778888776542 6666542 22221 1 12222233333332 344555667
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHc-cCCHHHHHHHHH----HhHHHcCCCCCHhHHHHHHHH
Q 047393 119 ISARVNHGHPSEALDLFKDKQWRYT-SMNPTTFRSALKAYAL-MGLVGEAYRLFL----SMEEVYHIEPSEEHYSIMVEA 192 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~-~g~~~~a~~~~~----~m~~~~g~~p~~~~~~~li~~ 192 (373)
+.+++...+.....++++......+ ++.... .++.+.+. .-..+.|.+.+. .+.+.+| ++......+|..
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~--~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~--~~~~~~~~~i~~ 349 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFP--QILTLIGRNPVGYPLAWQFLRKNWNKLVQKFE--LGSSSIAHMVMG 349 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHH--HHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCchhHHH--HHHHHHhcCcchHHHHHHHHHHHHHHHHHHhC--cCchhHHHHHHH
Confidence 7777777777777777776665443 333222 12233332 222344444433 3334332 233445555554
Q ss_pred HHh----cCCHHHHHHHHHh
Q 047393 193 LGR----AGMFEEVLEFIKG 208 (373)
Q Consensus 193 ~~~----~g~~~~A~~~~~~ 208 (373)
... ..+.++..++|+.
T Consensus 350 ~~~~~~t~~~l~e~~~Ff~~ 369 (419)
T 3rjo_A 350 TTNQFSTRTRLEEVKGFFSS 369 (419)
T ss_dssp TTTTCCSHHHHHHHHHHHHT
T ss_pred HhhcCCCHHHHHHHHHHHHh
Confidence 433 2344555556655
No 321
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.79 E-value=2.3e+02 Score=22.76 Aligned_cols=56 Identities=16% Similarity=0.008 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCC
Q 047393 125 HGHPSEALDLFKDKQWRYTSMN-PTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEP 181 (373)
Q Consensus 125 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p 181 (373)
.+...++.++|..|...|+.-. ...|..-...+-..|++.+|..+|+.-.+. +-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3445577777777777776444 445556666666777777777777766544 4444
No 322
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=28.51 E-value=1.6e+02 Score=20.86 Aligned_cols=72 Identities=14% Similarity=0.001 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047393 128 PSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVLEFIK 207 (373)
Q Consensus 128 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (373)
.++|.-+-+.+...+. ...+-..-+..+...|++++|..+.+.+ +.||...|-+|-. .|.|..+++..-+.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 4555555554444332 1111112233445566666666655433 2566666544432 35566666665554
Q ss_pred h
Q 047393 208 G 208 (373)
Q Consensus 208 ~ 208 (373)
+
T Consensus 94 ~ 94 (116)
T 2p58_C 94 R 94 (116)
T ss_dssp H
T ss_pred H
Confidence 4
No 323
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.28 E-value=1.7e+02 Score=23.04 Aligned_cols=180 Identities=8% Similarity=-0.047 Sum_probs=92.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCC-----ch--hHHHHHHH
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLIS-----HP--AVGNCLIN 89 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-----~~--~~~~~li~ 89 (373)
.+...++.|+.+.+..+++.-...--..|..-.+.|..+ +..|+.+.+..+++ .|..+ +. ....+.+.
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA-ALYDNLEAAMVLME----AAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-HHcCCHHHHHHHHH----cCchhccccccccCCCCcCHHH
Confidence 345566788877776666541111112343333334333 44567665555544 33221 11 12233445
Q ss_pred HhHhcCCHHHHHHHHccCCCCCh----------------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HH
Q 047393 90 INSRCGKIDDADLAFKSTPEKNS----------------LSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNPTT--FR 151 (373)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~d~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~ 151 (373)
..++.|+.+-+..+++.-..++. .-++.| ...+..|+.+ +++.+.+.|..++... -.
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~ 155 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEE----IVRLLIEHGADIRAQDSLGN 155 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCCCCCC
Confidence 55677888887777776443321 122333 3334455554 3444455565554321 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCC---------CHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEP---------SEEHYSIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (373)
+.+...+..|+.+.+..+++.+.+. |..+ |..-.+ -+..-++.|+.+-+.-+++.
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhc
Confidence 3455556788888887777766543 5432 222222 34455667888877777665
No 324
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=27.84 E-value=1.6e+02 Score=21.88 Aligned_cols=86 Identities=10% Similarity=0.066 Sum_probs=41.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh--HHHHHHHHhHhcC
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCG 95 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g 95 (373)
+...+..|+.+.+..+++.-...--.+|..-.+.|..+ +..|+.+-+ +.+.+.|..++.. ...+.+...++.|
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFGEIETV----RFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH-HHTTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH-HHcCCHHHH----HHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 34456778877766665432110011233333333333 345665444 4444556555432 1223444556667
Q ss_pred CHHHHHHHHccCC
Q 047393 96 KIDDADLAFKSTP 108 (373)
Q Consensus 96 ~~~~A~~~~~~m~ 108 (373)
+.+-+..+++.-.
T Consensus 81 ~~~~v~~Ll~~g~ 93 (172)
T 3v30_A 81 YTDIVGLLLERDV 93 (172)
T ss_dssp CHHHHHHHHTTTC
T ss_pred CHHHHHHHHHcCC
Confidence 7776666665433
No 325
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=27.73 E-value=90 Score=22.83 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=13.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYS 48 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 48 (373)
+..+...+..-.|.++++.+.+.+...+..|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~T 47 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTT 47 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhh
Confidence 3334444444455555555544433333333
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=26.93 E-value=47 Score=20.80 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 047393 28 EMVHELLERIQLCCGFIDSYSICDILNSC 56 (373)
Q Consensus 28 ~~A~~l~~~m~~~g~~p~~~~~~~ll~~~ 56 (373)
++|.+.|.+|++..-.+...||...|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 57778887777654444556777777776
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.70 E-value=1.9e+02 Score=22.32 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=35.2
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchh
Q 047393 20 ACIKAKDYEMVHELLERIQLCCGF-IDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPA 82 (373)
Q Consensus 20 ~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 82 (373)
..++.|+++....++.. +.. .+...-.+.+...+..|+.+.-.++.+.+++.|..++..
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~ 71 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR 71 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC
Confidence 34678888886665543 321 111111234445556677766677888888888877653
No 328
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=26.61 E-value=24 Score=20.02 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=10.9
Q ss_pred ccCCccCCCCCccc
Q 047393 355 FKDGKCSCKDAYGS 368 (373)
Q Consensus 355 ~~~~~~~~~~~~~~ 368 (373)
.+++.|+||.|-+.
T Consensus 19 ~~~~~C~CG~y~~~ 32 (42)
T 2l0z_A 19 NSLGGCRCGKYPNL 32 (42)
T ss_dssp CTTSSBTTTTBCCC
T ss_pred cCCceeccccccCC
Confidence 36889999998654
No 329
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.45 E-value=60 Score=23.92 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhH--HHHHHHHhHh
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCG-FIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAV--GNCLININSR 93 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~ 93 (373)
.+...++.|+.+.+..+++. ....+ ..|..-.+ .+.. +..|+.+.+. .+.+.|..++... ..+.+...++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t-~L~~-~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKT-ALQV-MMFGSTAIAL----ELLKQGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCC-HHHH-SCTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCc-HHHH-HHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 34445667887777777665 21111 11222222 3333 5566655433 3345565544221 1223333344
Q ss_pred cCCHHHHHHHHc
Q 047393 94 CGKIDDADLAFK 105 (373)
Q Consensus 94 ~g~~~~A~~~~~ 105 (373)
.|+.+-+..+++
T Consensus 78 ~~~~~~v~~Ll~ 89 (156)
T 1bd8_A 78 TGFLDTLKVLVE 89 (156)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCcHHHHHHHHH
Confidence 455554444444
No 330
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=26.39 E-value=4.3e+02 Score=25.26 Aligned_cols=83 Identities=12% Similarity=0.052 Sum_probs=45.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFEEVL 203 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 203 (373)
..+...++...+...... .++.....-.+....+.|+++.|...|+.|... ......-.--+..++...|+.++|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 264 GNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp STTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHH
Confidence 334244555555554333 234333334444445668888888888777321 1112222233455666778888888
Q ss_pred HHHHhhC
Q 047393 204 EFIKGIV 210 (373)
Q Consensus 204 ~~~~~~~ 210 (373)
.+|..+.
T Consensus 340 ~~~~~~a 346 (618)
T 1qsa_A 340 EILHQLM 346 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888744
No 331
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.04 E-value=1.4e+02 Score=22.86 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHHc-CCCCCHhHHHHHHHHHHhcCCHH
Q 047393 129 SEALDLFKD-KQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEEVY-HIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 129 ~~A~~l~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
+.+++-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 444444444 56678887654 3455666667777778999999985541 34557777777788999999864
No 332
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.99 E-value=64 Score=22.35 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047393 197 GMFEEVLEFIKGIVPGKLCPLIWRTLLLSSRVHGDMKLAKY 237 (373)
Q Consensus 197 g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 237 (373)
.+.++|.++++. ++ ..++..|..++.++...|+...|..
T Consensus 51 t~~~~ar~Lld~-L~-~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIID-LE-TRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHH-HT-TSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHH-HH-HcChHHHHHHHHHHHHcCcHHHHHH
Confidence 356667777776 44 3455666777777766666655543
No 333
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.83 E-value=69 Score=23.26 Aligned_cols=43 Identities=12% Similarity=-0.120 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 047393 33 LLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR 75 (373)
Q Consensus 33 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 75 (373)
+|+++.+..+.|+...-..-+..+...++++.|.+++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4566666566665554444444556677888888888777653
No 334
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.48 E-value=92 Score=22.58 Aligned_cols=42 Identities=14% Similarity=-0.122 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 047393 134 LFKDKQWRYTSMNPTTFRSALKAYALMGLVGEAYRLFLSMEE 175 (373)
Q Consensus 134 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 175 (373)
+|+.+.+..+.|+...-..-|..+...++++.|..++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555666666655555555666778888888888877743
No 335
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.27 E-value=1.2e+02 Score=22.01 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=26.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 153 ALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 153 ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRR-GENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCEE
Confidence 334444444455666677766443 44445666666667777777644
No 336
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.25 E-value=3.1e+02 Score=23.78 Aligned_cols=65 Identities=6% Similarity=-0.022 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCCC
Q 047393 14 WNLLLKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPI-LLNVGTQAQAYMTKRGLIS 79 (373)
Q Consensus 14 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~ 79 (373)
-+.++.-|...|+.++|.+.++++...... ...+...+..++-+.. ..+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 567899999999999999998888532111 1223344444444322 2455667777777666543
No 337
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=25.18 E-value=2.6e+02 Score=24.26 Aligned_cols=43 Identities=7% Similarity=-0.083 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC
Q 047393 67 QAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKSTPE 109 (373)
Q Consensus 67 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (373)
++++.+.+.|+.|...++.-++..+++.=.++.+..+++.+..
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~ 272 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQS 272 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHh
Confidence 5677778888888888888888888888889999999987763
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.08 E-value=1.4e+02 Score=24.79 Aligned_cols=47 Identities=4% Similarity=-0.017 Sum_probs=22.7
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 047393 57 LNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKIDDADLAFKST 107 (373)
Q Consensus 57 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 107 (373)
+..|+.+.+. .+++.|..++.....+.+...++.|+.+-+..+++.-
T Consensus 39 ~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 39 IADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 3455554433 3334454444332333444455556666655555543
No 339
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.08 E-value=1.5e+02 Score=23.43 Aligned_cols=177 Identities=12% Similarity=0.035 Sum_probs=90.7
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCCCCchh--HHHHHHHHhHhcCCHHHHHHHHccCCC--------CChhHHHHHHHHHH
Q 047393 54 NSCLNPILLNVGTQAQAYMTKRGLISHPA--VGNCLININSRCGKIDDADLAFKSTPE--------KNSLSWTFIISARV 123 (373)
Q Consensus 54 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~--------~d~~~~~~li~~~~ 123 (373)
...++.|+.+.+..+++. .|..++.. ...+.+...++.|+.+-+..+++.-.. .|..-++.|. ..+
T Consensus 8 ~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~-~A~ 83 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH-IAV 83 (232)
T ss_dssp HHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH-HHH
T ss_pred HHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH-HHH
Confidence 334556776555544432 25554432 223455666778898888888875432 1222333333 334
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHH---------------HHHHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhH--H
Q 047393 124 NHGHPSEALDLFKDKQWRYTSMNPTT---------------FRSALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEH--Y 186 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p~~~t---------------~~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~--~ 186 (373)
..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++ . |..++... -
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~-ga~~~~~d~~g 154 (232)
T 2rfa_A 84 INQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE----H-GADIRAQDSLG 154 (232)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH----T-TCCTTCCCTTS
T ss_pred HcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH----C-CCCCCCCCCCC
Confidence 566654 4444555565554321 2234444566788776665553 2 55543221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCC--C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 047393 187 SIMVEALGRAGMFEEVLEFIKGIVP--G---------KLCPLIWRTLLLSSRVHGDMKLAKYALDKLLE 244 (373)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~--~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 244 (373)
.+.+...+..|+.+-+.++++-+++ . .+|..-++. +...++.|+.+-+..+++.-..
T Consensus 155 ~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp CCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 2344555677888766333332111 1 122222333 4444567888877777776554
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.02 E-value=1.7e+02 Score=22.40 Aligned_cols=69 Identities=9% Similarity=-0.036 Sum_probs=45.5
Q ss_pred HhHHHHHHHH-HHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CCCCchhHHHHHHHHhHhcCC
Q 047393 27 YEMVHELLER-IQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKR--GLISHPAVGNCLININSRCGK 96 (373)
Q Consensus 27 ~~~A~~l~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~ 96 (373)
.+.+++-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|----++.+.+.|-
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3455555544 55678887654 345666777777778899999999877 655565554445566766664
No 341
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.70 E-value=1.1e+02 Score=22.72 Aligned_cols=48 Identities=13% Similarity=0.006 Sum_probs=29.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 152 SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 152 ~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
.++..+...+..-.|.++++.+.++ +...+..|.-.-++.+...|-+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445555555555677777777544 44556666666777777777654
No 342
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.36 E-value=5.4e+02 Score=24.90 Aligned_cols=208 Identities=9% Similarity=-0.056 Sum_probs=98.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHh---c
Q 047393 18 LKACIKAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSR---C 94 (373)
Q Consensus 18 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~ 94 (373)
...+.-.|+++.|.+.+-.. ...|.+.+...+.-++-.+- ...++.. ..+ .| ...+..||..|.+ .
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHhhc
Confidence 34556678888888876543 23455666665555443332 1111110 001 12 2336667777765 4
Q ss_pred CCHHHHHHHHccCCCCC-----hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---------CC-----C--HHHHH--
Q 047393 95 GKIDDADLAFKSTPEKN-----SLSWTFIISARVNHGHPSEALDLFKDKQWRYT---------SM-----N--PTTFR-- 151 (373)
Q Consensus 95 g~~~~A~~~~~~m~~~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p-----~--~~t~~-- 151 (373)
.+..+|.+.|--+.-++ ...+.++-......+.++ .++..+...|. .| | .....
T Consensus 370 td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~---~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~ 446 (661)
T 2qx5_A 370 SDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT---VLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTIT 446 (661)
T ss_dssp TCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH---HHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH---HHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHH
Confidence 78888888776553332 122232323333333332 22221111110 11 2 11211
Q ss_pred -HHHHHHHccCCHHHHHHHHHHhHHHcCCCCCHhHHHHHHH-HHHhc---------------CCHHHHHHHHHhhCC---
Q 047393 152 -SALKAYALMGLVGEAYRLFLSMEEVYHIEPSEEHYSIMVE-ALGRA---------------GMFEEVLEFIKGIVP--- 211 (373)
Q Consensus 152 -~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~-~~~~~---------------g~~~~A~~~~~~~~~--- 211 (373)
....-+...|++++|..+|... .++ .--..+.|.++. +.... +-...|.++.+. ..
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~La-~~~--d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~-y~~~~ 522 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQLA-EEY--DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASI-YFDNA 522 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHT-TCH--HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHh-cCH--HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH-HhcCc
Confidence 2233456788888888888876 321 111233343332 22221 122345555444 22
Q ss_pred -----CCC-CHHHHHHHHHH-----HHHcCCHHHHHHHHHHHh
Q 047393 212 -----GKL-CPLIWRTLLLS-----SRVHGDMKLAKYALDKLL 243 (373)
Q Consensus 212 -----~~p-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~ 243 (373)
+.+ +..|+..|++. +...|+++.|.+.++++.
T Consensus 523 ~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 523 GISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 111 34566666553 378999999999888854
No 343
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.35 E-value=1.4e+02 Score=24.49 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCCCc-hhHHHHHHHHhHhcCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 047393 63 NVGTQAQAYMTKRGLISH-PAVGNCLININSRCGKIDDADLAFKSTPEKNSLSWTFIISAR 122 (373)
Q Consensus 63 ~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~d~~~~~~li~~~ 122 (373)
+.+..+|..|...|+--. ...|......+-..|++.+|.++|+...+..+....-|...|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 467789999999887665 456788888889999999999999877765555555555444
No 344
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=22.28 E-value=35 Score=16.77 Aligned_cols=16 Identities=25% Similarity=0.843 Sum_probs=12.0
Q ss_pred cccccCCcc--CCCCCcc
Q 047393 352 FHHFKDGKC--SCKDAYG 367 (373)
Q Consensus 352 ~~~~~~~~~--~~~~~~~ 367 (373)
--.|.+|.| .|++.|-
T Consensus 6 cv~fgngfcgdncgnswa 23 (27)
T 2hgo_A 6 CVNFGNGFCGDNCGNSWA 23 (27)
T ss_dssp CEEETTTEEECSSSCEEE
T ss_pred eEeecCccccCCcCCccc
Confidence 345888888 7888884
No 345
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.22 E-value=1e+02 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 047393 13 PWNLLLKACIKAKDYEMVHELLERIQL 39 (373)
Q Consensus 13 ~~n~li~~~~~~g~~~~A~~l~~~m~~ 39 (373)
....+|.-|...|+.++|.+.++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 356788999999999999999998863
No 346
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=22.20 E-value=1.8e+02 Score=24.06 Aligned_cols=106 Identities=17% Similarity=0.020 Sum_probs=48.8
Q ss_pred hcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHH
Q 047393 93 RCGKIDDADLAFKSTPEK---NSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP---TTFRSALKAYALMGLVGEA 166 (373)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a 166 (373)
..++.+-...+++.-..+ |..-++.|. ..+..|+.+ +.+.+.+.|..++. .-.+. +...+..|+.+-+
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh-~A~~~g~~~----~v~~Ll~~gad~n~~d~~G~Tp-Lh~A~~~g~~~iv 232 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGNINAKASQAGQTALM-LAVSHGRVD----VVKALLACEADVNVQDDDGSTA-LMCACEHGHKEIA 232 (276)
T ss_dssp SHHHHHHHHHHHHHSCTTCCCTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHH
T ss_pred hhhhHHHHHHHHHcCCCccccCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHH
Confidence 334555555555433221 222223333 234455544 34444455655432 22223 3333556776655
Q ss_pred HHHHHHhHHHcCCCCCHhHH--HHHHHHHHhcCCHHHHHHHHHh
Q 047393 167 YRLFLSMEEVYHIEPSEEHY--SIMVEALGRAGMFEEVLEFIKG 208 (373)
Q Consensus 167 ~~~~~~m~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~ 208 (373)
..+++ ..|..++.... .+-+...++.|+.+-+.-++++
T Consensus 233 ~~Ll~----~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 233 GLLLA----VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHT----STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHh----cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 55543 12444432111 1234445566888777777776
No 347
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.14 E-value=1.2e+02 Score=22.74 Aligned_cols=62 Identities=5% Similarity=-0.136 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcC
Q 047393 32 ELLERIQLCCGFIDSYSICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCG 95 (373)
Q Consensus 32 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 95 (373)
++-+.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|----++.+.+.|
T Consensus 5 ~~~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp THHHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 348
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.14 E-value=2e+02 Score=22.05 Aligned_cols=52 Identities=8% Similarity=-0.026 Sum_probs=29.2
Q ss_pred HcCCHhHHHHHHHHHHhcCCCC--CHHHHHHHHH-HH-----cCCCchHHHHHHHHHHHH
Q 047393 23 KAKDYEMVHELLERIQLCCGFI--DSYSICDILN-SC-----LNPILLNVGTQAQAYMTK 74 (373)
Q Consensus 23 ~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~m~~ 74 (373)
..|++-+|.++|+..=...-.| +...|..||. .. .+.|+...|..++.....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777765543334 3344555555 21 234666666666665533
No 349
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.08 E-value=3.1e+02 Score=21.98 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=39.9
Q ss_pred HHHHHHHHH---HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCc-----hHHHHHHHHHHHHcCC
Q 047393 14 WNLLLKACI---KAKDYEMVHELLERIQLCCGFIDSYSICDILNSCLNPIL-----LNVGTQAQAYMTKRGL 77 (373)
Q Consensus 14 ~n~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~g~ 77 (373)
..-+|+++. +..+.+.|+-.+.+|.+.| .|.-..-..++.+.-..|. +..|...++.....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344666664 4578888888888888888 6666655566666555443 3344555555555564
No 350
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.00 E-value=89 Score=27.13 Aligned_cols=216 Identities=10% Similarity=-0.082 Sum_probs=107.3
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH---HHHHHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHH
Q 047393 9 DVEIPWNLLLKACIKAKDYEMVHELLERIQLCCGFIDSY---SICDILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGN 85 (373)
Q Consensus 9 p~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 85 (373)
+|..-++.|.. .+..|+.+-+..++ +.|..++.. -.+.| ...+..|+.+- .+.+++.|..++.....
T Consensus 16 ~d~~g~t~L~~-Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L-~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKIHV-AARKGQTDEVRRLI----ETGVSPTIQNRFGCTAL-HLACKFGCVDT----AKYLASVGEVHSLWHGQ 85 (364)
T ss_dssp CCHHHHHHHHH-HHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHH-HHHHHHCCHHH----HHHHHHHCCCCCCBTTB
T ss_pred cCCCCCCHHHH-HHHcCCHHHHHHHH----HcCCCccccCCCCCcHH-HHHHHcCCHHH----HHHHHHCCCCccccCCC
Confidence 44455555544 55678876655544 456555432 23333 33344566544 44455666655553344
Q ss_pred HHHHHhHhcCCHHHHHHHHcc----CCCC--------------------ChhHHHHHHHHHHhCC--ChHHHHHHHHHHH
Q 047393 86 CLININSRCGKIDDADLAFKS----TPEK--------------------NSLSWTFIISARVNHG--HPSEALDLFKDKQ 139 (373)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~----m~~~--------------------d~~~~~~li~~~~~~g--~~~~A~~l~~~m~ 139 (373)
+.+..-+..|+.+-+..+++. -..+ |..-++.|. ..+..| +.+ +++.+.
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~----~v~~Ll 160 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLE----MIKILV 160 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHH----HHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHH----HHHHHH
Confidence 455556677888887777765 1111 111233333 334455 433 444444
Q ss_pred HcCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHhHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHhhCCC-C
Q 047393 140 WRYTSMNPTTF--RSALKAYALMGLVGEAYRLFLSMEEVYHIEPS---EEHYSIMVEALGRAGMFEEVLEFIKGIVPG-K 213 (373)
Q Consensus 140 ~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~ 213 (373)
+.|..++.... .+.+...+..|+.+-+..+++.-....+..++ ..-. +.+...+..|+.+-+.-+++.-... .
T Consensus 161 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVEMGIDVNM 239 (364)
T ss_dssp HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC-CTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 55655543221 23344445778888777777643111111121 1112 2233445778877666666541111 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047393 214 LCPLIWRTLLLSSRVHGDMKLAKYALDK 241 (373)
Q Consensus 214 p~~~~~~~li~~~~~~g~~~~A~~~~~~ 241 (373)
.|..-++. +...+..|+.+-+..+++.
T Consensus 240 ~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 240 EDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 12222223 3334566888877777765
No 351
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=21.92 E-value=2.8e+02 Score=22.89 Aligned_cols=27 Identities=4% Similarity=-0.209 Sum_probs=20.3
Q ss_pred CCCChhHHHHHHHHHHHc-CCHhHHHHH
Q 047393 7 ISDVEIPWNLLLKACIKA-KDYEMVHEL 33 (373)
Q Consensus 7 ~~p~~~~~n~li~~~~~~-g~~~~A~~l 33 (373)
|.|....|+..+...+.. |++.+++..
T Consensus 125 ~~p~~~aYt~~ll~~a~~~g~~~~~laA 152 (248)
T 3no6_A 125 WPPSGDHYIKHMYFNAFARENAAFTIAA 152 (248)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 457778898888888887 887776543
No 352
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.25 E-value=1e+02 Score=25.01 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=50.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCCC--------
Q 047393 17 LLKACIKAKDYEMVHELLERIQLCCGFIDS-------YSICDILNSCLN--PILLNVGTQAQAYMTKRGLIS-------- 79 (373)
Q Consensus 17 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~~-------- 79 (373)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++.. .|+.+-+..+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 455567889998888888888777765543 334444444432 267666666665433322111
Q ss_pred ch-hHHHHHHHHhHhcCCHHHHHHHHccCC
Q 047393 80 HP-AVGNCLININSRCGKIDDADLAFKSTP 108 (373)
Q Consensus 80 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (373)
+. ....+.+...++.|+.+-+..+++.-.
T Consensus 85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 00 112233444556677776666666543
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.10 E-value=82 Score=23.39 Aligned_cols=47 Identities=4% Similarity=0.014 Sum_probs=27.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCCCchhHHHHHHHHhHhcCCH
Q 047393 51 DILNSCLNPILLNVGTQAQAYMTKRGLISHPAVGNCLININSRCGKI 97 (373)
Q Consensus 51 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 97 (373)
.++..+...+..-.|.++++.+.+.+...+..|----++.+.+.|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455555555556777777776665555555544455566666543
No 354
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.02 E-value=1.2e+02 Score=24.79 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=40.0
Q ss_pred HHHHHHHccCCC-----CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 047393 98 DDADLAFKSTPE-----KNSLSWTFIISARVNHGHPSEALDLFKDKQWRYTSMNP 147 (373)
Q Consensus 98 ~~A~~~~~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 147 (373)
+++.++|..|.. .-+.-|-.....+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 456667766653 35667888888899999999999999999999888854
No 355
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.85 E-value=2.9e+02 Score=21.20 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=32.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHccCCHHHHHHHHHHhHHH
Q 047393 124 NHGHPSEALDLFKDKQWRYTSM--NPTTFRSALK-A-----YALMGLVGEAYRLFLSMEEV 176 (373)
Q Consensus 124 ~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~-~-----~~~~g~~~~a~~~~~~m~~~ 176 (373)
..|++-+|.++|+..=...-.| ....|-.||. . ..+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3477777777777765443344 4455556665 2 23467777777777776543
No 356
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=20.83 E-value=6.5e+02 Score=25.30 Aligned_cols=86 Identities=9% Similarity=-0.100 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCc---hHHHHHHHHHHHHc----CCCCchh--HHHHHHHHhHhcCCHHHHHHHHccCCCC-ChhHHHHH
Q 047393 49 ICDILNSCLNPIL---LNVGTQAQAYMTKR----GLISHPA--VGNCLININSRCGKIDDADLAFKSTPEK-NSLSWTFI 118 (373)
Q Consensus 49 ~~~ll~~~~~~~~---~~~a~~~~~~m~~~----g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~-d~~~~~~l 118 (373)
-..++...|+.|. .++|.+.|+..... .++||.. +|..-+ |.-++-..+++...+. +..--+.+
T Consensus 683 r~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~------g~~~~~~~l~~~y~~~~~~~ek~~l 756 (897)
T 2xdt_A 683 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QSTEGWDFLYSKYQFSLSSTEKSQI 756 (897)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT------TSHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec------CCHHHHHHHHHHHHccCCHHHHHHH
Confidence 3345555666665 55677777776554 3455544 232221 4444434444444433 44445667
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 047393 119 ISARVNHGHPSEALDLFKDKQW 140 (373)
Q Consensus 119 i~~~~~~g~~~~A~~l~~~m~~ 140 (373)
+.+++...+.....++++....
T Consensus 757 l~aL~c~~~~~~l~~~L~~~~~ 778 (897)
T 2xdt_A 757 EFALCRTQNKEKLQWLLDESFK 778 (897)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHhC
Confidence 7888777777777777776664
No 357
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=20.76 E-value=2.3e+02 Score=22.76 Aligned_cols=26 Identities=8% Similarity=-0.137 Sum_probs=19.7
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHH
Q 047393 7 ISDVEIPWNLLLKACIKAKDYEMVHE 32 (373)
Q Consensus 7 ~~p~~~~~n~li~~~~~~g~~~~A~~ 32 (373)
|.|....|...+...+..|++.+++.
T Consensus 109 ~~p~~~aY~~~l~~~a~~~~~~~~~a 134 (221)
T 3ibx_A 109 PTLANKSYTSYMLAEGFKGSIKEVAA 134 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45677888888888888888776654
No 358
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.30 E-value=1.5e+02 Score=21.76 Aligned_cols=62 Identities=8% Similarity=-0.011 Sum_probs=39.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhHHHcCCCCCHhHHHHHHHHHHhcCCHH
Q 047393 137 DKQWRYTSMNPTTFRSALKAYALMG-LVGEAYRLFLSMEEVYHIEPSEEHYSIMVEALGRAGMFE 200 (373)
Q Consensus 137 ~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 200 (373)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+. +...+..|.-.-++.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 35667776665433 3344444554 566788888888554 55567777777788888888755
Done!