BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047398
         (246 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  163 bits (412), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 103/159 (64%), Gaps = 7/159 (4%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTDDELV  YL  K     LP PII  +++YK+DPWDLP       +E YFF
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFF 74

Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           +  + KYPNG+R NRA  +GYWKATG DK +    R     +G+KK LVFY GKAP   +
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT----LGIKKALVFYAGKAPRGVK 130

Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKK 169
           TDWIMHEYRL  A      ++  S  +++WV+C+++ KK
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 107/161 (66%), Gaps = 12/161 (7%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+EL+ QYL  K         +I  I++YK+DPW LP      E+E YFF
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76

Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           S  + KYPNG+R NR   SGYWKATG DK I +  +     +G+KK LVFY GKAP  ++
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ----RVGIKKALVFYIGKAPKGTK 132

Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRT 171
           T+WIMHEYRL+     +PS RN S ++++WV+C+I+ K+ +
Sbjct: 133 TNWIMHEYRLI-----EPSRRNGSTKLDDWVLCRIYKKQSS 168


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 107/161 (66%), Gaps = 12/161 (7%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+EL+ QYL  K         +I  I++YK+DPW LP      E+E YFF
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 79

Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           S  + KYPNG+R NR   SGYWKATG DK I +  +     +G+KK LVFY GKAP  ++
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ----RVGIKKALVFYIGKAPKGTK 135

Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRT 171
           T+WIMHEYRL+     +PS RN S ++++WV+C+I+ K+ +
Sbjct: 136 TNWIMHEYRLI-----EPSRRNGSTKLDDWVLCRIYKKQSS 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,831,159
Number of Sequences: 62578
Number of extensions: 284350
Number of successful extensions: 587
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 4
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)