Query 047398
Match_columns 246
No_of_seqs 174 out of 974
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.5E-58 1.9E-62 387.0 13.8 158 9-170 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 9.1E-58 3.1E-62 385.0 12.8 163 1-172 4-169 (171)
3 1cmb_A Met APO-repressor; DNA- 33.4 56 0.0019 24.0 4.3 39 21-63 50-88 (104)
4 1ldd_A APC2WHB, anaphase promo 25.2 36 0.0012 24.0 2.0 27 14-41 36-63 (74)
5 4dox_A Coat protein; all helix 21.8 56 0.0019 27.9 2.9 32 5-36 145-177 (226)
6 1f6k_A N-acetylneuraminate lya 18.0 34 0.0012 29.7 0.8 31 10-42 102-132 (293)
7 2ehh_A DHDPS, dihydrodipicolin 17.9 35 0.0012 29.7 0.8 31 10-42 98-128 (294)
8 3dz1_A Dihydrodipicolinate syn 17.7 36 0.0012 29.9 0.9 31 9-42 104-136 (313)
9 3fkr_A L-2-keto-3-deoxyarabona 17.6 45 0.0015 29.3 1.4 33 9-42 105-139 (309)
10 3cpr_A Dihydrodipicolinate syn 17.6 33 0.0011 30.0 0.6 31 10-42 114-144 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.5e-58 Score=386.98 Aligned_cols=158 Identities=51% Similarity=1.006 Sum_probs=132.1
Q ss_pred CCCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCCCCceecccCCCCCCCCCCCcc---ccceeeeecccccCCCCCCccc
Q 047398 9 DGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFFSNNEAKYPNGNRINR 85 (246)
Q Consensus 9 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp~~~I~~vDVy~~~PwdLpg~~---~~e~YFFs~~~~k~~~g~R~~R 85 (246)
.+++.|||||||+|||||||.|||++|+.|.++|..+|+++|||++|||+||+.. +.+||||+++++||++|.|.+|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 4568999999999999999999999999999999999999999999999999864 4789999999999999999999
Q ss_pred cccCceEeecccceeeeeCCCCceeeeeeEEEEEEeccCCCCCCCcCeEEEEEEeCCCCCCCCCCCCcccCCCcEEEEEE
Q 047398 86 ATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKI 165 (246)
Q Consensus 86 ~tg~G~Wk~~G~~k~I~~~~~~~~~~vG~KktL~Fy~g~~~~g~rT~WvMhEY~L~~~~~~~~~~~~~~~~~~~~VLCrI 165 (246)
+|++||||++|++++|... +.+ ||+||+|+||.|++|++.+|+|+||||+|.................++||||||
T Consensus 90 ~t~~G~WkatG~dk~I~~~---g~~-vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrv 165 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPR---GRT-LGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165 (174)
T ss_dssp EETTEEEEECSCCEEECCS---SSC-CEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEE
T ss_pred ecCCceEccCCCCcEEeeC---CcE-EEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEE
Confidence 9999999999999999864 355 999999999999999999999999999999875432111111125689999999
Q ss_pred EEcCC
Q 047398 166 FMKKR 170 (246)
Q Consensus 166 y~k~r 170 (246)
|+|+.
T Consensus 166 f~K~~ 170 (174)
T 3ulx_A 166 YNKKN 170 (174)
T ss_dssp EESCC
T ss_pred EEcCC
Confidence 99875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=9.1e-58 Score=384.99 Aligned_cols=163 Identities=48% Similarity=0.894 Sum_probs=130.9
Q ss_pred CCccccccCCCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCCCCceecccCCCCCCCCCCCcc---ccceeeeecccccC
Q 047398 1 MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFFSNNEAKY 77 (246)
Q Consensus 1 m~~~~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp~~~I~~vDVy~~~PwdLpg~~---~~e~YFFs~~~~k~ 77 (246)
|+..+--...++.|||||||+|||||||.+||++|+.|.++|..+|+++|||.+|||+||+.. +.+||||+++.+||
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 444433345678999999999999999999999999999999999999999999999999864 47899999999999
Q ss_pred CCCCCccccccCceEeecccceeeeeCCCCceeeeeeEEEEEEeccCCCCCCCcCeEEEEEEeCCCCCCCCCCCCcccCC
Q 047398 78 PNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEM 157 (246)
Q Consensus 78 ~~g~R~~R~tg~G~Wk~~G~~k~I~~~~~~~~~~vG~KktL~Fy~g~~~~g~rT~WvMhEY~L~~~~~~~~~~~~~~~~~ 157 (246)
++|.|.+|+|++||||++|++++|... +.+ ||+||+|+||.|++|++.+|+|+||||+|....... .....
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~---~~~-vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~-----~~~~~ 154 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIISTE---GQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN-----GSTKL 154 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEET---TEE-EEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-------------
T ss_pred CCCCcccccCCCCEEeccCCCceEEec---CcE-EEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcccc-----CcccC
Confidence 999999999999999999999999976 255 999999999999999999999999999999875211 11256
Q ss_pred CcEEEEEEEEcCCCC
Q 047398 158 ENWVICKIFMKKRTR 172 (246)
Q Consensus 158 ~~~VLCrIy~k~r~~ 172 (246)
++|||||||+|+.+.
T Consensus 155 ~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 155 DDWVLCRIYKKQSSA 169 (171)
T ss_dssp CCEEEEEEEECC---
T ss_pred CCEEEEEEEEcCCCC
Confidence 899999999998754
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=33.38 E-value=56 Score=24.03 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCCceecccCCCCCCCCCCCcc
Q 047398 21 QPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL 63 (246)
Q Consensus 21 ~PTDeELV~~YL~~K~~g~plp~~~I~~vDVy~~~PwdLpg~~ 63 (246)
|-|..||+..-...-..|+|||. +.|+-+..|-++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 45778887766666778999997 5788999999998653
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=25.24 E-value=36 Score=24.01 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.3
Q ss_pred CCCCeeeCC-CHHHHHHHHHHHHHcCCCC
Q 047398 14 LPPGFRFQP-TDDELVFQYLKCKVFSSPL 41 (246)
Q Consensus 14 LPpGfRF~P-TDeELV~~YL~~K~~g~pl 41 (246)
.|.|+.|.. |++||- .||..++...-|
T Consensus 36 ~~~~~~~~~it~~eL~-~fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLE-GYLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHH-HHHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHH-HHHHHHHhCCeE
Confidence 477999998 999987 699999986654
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=21.75 E-value=56 Score=27.89 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=20.9
Q ss_pred ccccCCC-cCCCCCeeeCCCHHHHHHHHHHHHH
Q 047398 5 QFVRDGV-TRLPPGFRFQPTDDELVFQYLKCKV 36 (246)
Q Consensus 5 ~~~~~~~-~~LPpGfRF~PTDeELV~~YL~~K~ 36 (246)
..|.|.- ++-+-|..+.||++|+|.|=..+++
T Consensus 145 D~V~n~AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 145 DGVENPAAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp GGTTCTTSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred cccCCccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4555544 4555589999999999987554433
No 6
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=18.02 E-value=34 Score=29.67 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=19.7
Q ss_pred CCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCC
Q 047398 10 GVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLP 42 (246)
Q Consensus 10 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp 42 (246)
+.+-+||-| |.||+++|+.||- .-+...++|
T Consensus 102 avlv~~P~y-~~~~~~~l~~~f~-~va~a~~lP 132 (293)
T 1f6k_A 102 CLSAVTPFY-YKFSFPEIKHYYD-TIIAETGSN 132 (293)
T ss_dssp EEEEECCCS-SCCCHHHHHHHHH-HHHHHHCCC
T ss_pred EEEECCCCC-CCCCHHHHHHHHH-HHHHhCCCC
Confidence 445667754 8899999997664 333333444
No 7
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=17.88 E-value=35 Score=29.65 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=20.0
Q ss_pred CCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCC
Q 047398 10 GVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLP 42 (246)
Q Consensus 10 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp 42 (246)
+.+-+||-| |.||+++|+.||- .-+...++|
T Consensus 98 avlv~~P~y-~~~s~~~l~~~f~-~va~a~~lP 128 (294)
T 2ehh_A 98 GALVVVPYY-NKPTQRGLYEHFK-TVAQEVDIP 128 (294)
T ss_dssp EEEEECCCS-SCCCHHHHHHHHH-HHHHHCCSC
T ss_pred EEEECCCCC-CCCCHHHHHHHHH-HHHHhcCCC
Confidence 345667754 8899999997764 334333454
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=17.70 E-value=36 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred CCCcCCCCCeeeCCCHHHHHHHHHHHHHcCCC--CC
Q 047398 9 DGVTRLPPGFRFQPTDDELVFQYLKCKVFSSP--LP 42 (246)
Q Consensus 9 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~p--lp 42 (246)
++.+-+||- |.||+++|+.|| +.-+...+ +|
T Consensus 104 davlv~~P~--~~~s~~~l~~~f-~~va~a~~~~lP 136 (313)
T 3dz1_A 104 AGVMIAPPP--SLRTDEQITTYF-RQATEAIGDDVP 136 (313)
T ss_dssp SEEEECCCT--TCCSHHHHHHHH-HHHHHHHCTTSC
T ss_pred CEEEECCCC--CCCCHHHHHHHH-HHHHHhCCCCCc
Confidence 344667884 569999999755 43444333 55
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=17.64 E-value=45 Score=29.27 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=21.3
Q ss_pred CCCcCCCCCee--eCCCHHHHHHHHHHHHHcCCCCC
Q 047398 9 DGVTRLPPGFR--FQPTDDELVFQYLKCKVFSSPLP 42 (246)
Q Consensus 9 ~~~~~LPpGfR--F~PTDeELV~~YL~~K~~g~plp 42 (246)
++.+-+||=|- |.||+++|+.|| +.-+...++|
T Consensus 105 davlv~~Pyy~~~~~~s~~~l~~~f-~~va~a~~lP 139 (309)
T 3fkr_A 105 AMVMAMPPYHGATFRVPEAQIFEFY-ARVSDAIAIP 139 (309)
T ss_dssp SEEEECCSCBTTTBCCCHHHHHHHH-HHHHHHCSSC
T ss_pred CEEEEcCCCCccCCCCCHHHHHHHH-HHHHHhcCCC
Confidence 34467788432 899999999765 4444444555
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=17.63 E-value=33 Score=30.00 Aligned_cols=31 Identities=16% Similarity=0.448 Sum_probs=20.3
Q ss_pred CCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCC
Q 047398 10 GVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLP 42 (246)
Q Consensus 10 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp 42 (246)
+.+-+|| |.|.||+++|+.||- .-+...++|
T Consensus 114 avlv~~P-~y~~~~~~~l~~~f~-~ia~a~~lP 144 (304)
T 3cpr_A 114 GLLVVTP-YYSKPSQEGLLAHFG-AIAAATEVP 144 (304)
T ss_dssp EEEEECC-CSSCCCHHHHHHHHH-HHHHHCCSC
T ss_pred EEEECCC-CCCCCCHHHHHHHHH-HHHHhcCCC
Confidence 4456788 458899999997664 344333454
Done!