BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047399
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/435 (34%), Positives = 215/435 (49%), Gaps = 54/435 (12%)
Query: 1 MKIDVETMSKEMIKPSTPTPSQLRHYQFSHLDQIGPPVYISLLYFY--HLDDHKLVXXXX 58
M +E +S+E+I PS+PTP L+ Y+ SHLDQ+ +I + FY LD +
Sbjct: 1 MAPQMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSN---LDPA 57
Query: 59 XXXXXXXXXXXXXXTKYYPLAGRIK-NNYVDCNDEGVVFSEAKE--------KDVVSVDG 109
T +YPLAGRI N+ VDCND GV F EA+ ++VV ++
Sbjct: 58 QTSQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEK 117
Query: 110 L--------------------AIAIQVNIFNCGNVAIAVMISHRIEDGSSLITFTKTWAA 149
L +A++++ F CG AI V +SH+I D SL TF W A
Sbjct: 118 LDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTA 177
Query: 150 VARGESENILPEF-VAAKLFPPKDAGGSSGTSFDPRPKKVVLKKFLFEGSKITTLRDKYG 208
RGE+E +LP F +AA+ FPP D S D + VV+K+F+F+ KI LR +
Sbjct: 178 TCRGETEIVLPNFDLAARHFPPVDNTPSPELVPD---ENVVMKRFVFDKEKIGALRAQAS 234
Query: 209 L----DNLIYPTRVEALSAFLWSRLAASTRIKVSPERPCMLVHAVNLRKRMEPQLPADSF 264
N +RV+ + A++W + TR K + ++V AVNLR RM P LP +
Sbjct: 235 SASEEKNF---SRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAM 291
Query: 265 GNLFAFAVTILEENHDNRMVNKFRDAIGKIDKDYLKAKNVEHSELIDLAITNGERFDKVE 324
GN+ T+L D F D IG + K ++ + EL+ +T + E
Sbjct: 292 GNI----ATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLK-GMTCLYELEPQE 346
Query: 325 LGYCIISSLCKFPVYEADFGLGKPISVAWGCFPYKNVIHFMDTKSGDGIEVWVHLEEEVM 384
L +S C+ Y+ DFG GKP+S FP +N MDT+SGDG+E W+ + E+ M
Sbjct: 347 L--LSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEM 404
Query: 385 AIFENDQELLAYVST 399
A+ ELL+ V +
Sbjct: 405 AMLP--VELLSLVDS 417
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 120/451 (26%), Positives = 200/451 (44%), Gaps = 84/451 (18%)
Query: 1 MKIDVETMSKEMIKPSTPTPSQLRHYQFSHLDQIGPPVYISLLYFY------HLDDHKLV 54
MKI+V+ + M++P+ TP R+ S++D + P + +YFY + D K++
Sbjct: 6 MKIEVKEST--MVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVL 61
Query: 55 XXXXXXXXXXXXXXXXXXTKYYPLAGRIKNNY-----VDCNDEGVVFSEAKEKDVV---- 105
+YP+AGR+K + ++CN EGV+F EA+ VV
Sbjct: 62 KDALSRAL----------VPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFG 111
Query: 106 -------------SVD---GLA----IAIQVNIFNCGNVAIAVMISHRIEDGSSLITFTK 145
+VD G++ + +QV F CG V++ V + H DG S + F
Sbjct: 112 DFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFIN 171
Query: 146 TWAAVARGESENILPEFVAAKLF-----------------PPKDAGGSSGTSFDPRPKKV 188
+W+ +ARG + LP F+ L PP A + D P+
Sbjct: 172 SWSDMARG-LDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETA 230
Query: 189 VLKKFLFEGSKITTLRDKYGLD-NLIYPTRVEALSAFLWSRLAASTRIKVSPERPCMLVH 247
V F +I+ L+ K D N I + E L+ +W R A R + ++ L
Sbjct: 231 V-SIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKAR-GLEVDQGTKLYI 287
Query: 248 AVNLRKRMEPQLPADSFGNLFAFAVTI-----LEENHDNRMVNKFRDAIGKIDKDYLKAK 302
A + R R+ P LP FGN+ A I LE +K DA+ ++D DYL++
Sbjct: 288 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSA 347
Query: 303 NVEHSEL---IDLAITNGERFDKVELGYCIISSLCKFPVYEADFGLGKPISVAWGCFPYK 359
+++ EL + + F LG I+S + P+++ADFG G+PI + G Y+
Sbjct: 348 -LDYLELQPDLKALVRGAHTFKXPNLG---ITSWVRLPIHDADFGWGRPIFMGPGGIAYE 403
Query: 360 NVIHFMDTKSGDG-IEVWVHLEEEVMAIFEN 389
+ + + + DG + V + L+ E M +F++
Sbjct: 404 GLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/444 (26%), Positives = 194/444 (43%), Gaps = 70/444 (15%)
Query: 1 MKIDVETMSKEMIKPSTPTPSQLRHYQFSHLDQIGPPVYISLLYFYHLDDHKLVXXXXXX 60
MKI+V+ + M++P+ TP R+ S++D + P + +YFY
Sbjct: 3 MKIEVKEST--MVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYR----PTGSSNFFD 54
Query: 61 XXXXXXXXXXXXTKYYPLAGRIKNNY-----VDCNDEGVVFSEAKEKDVV---------- 105
+YP+AGR+K + ++CN EGV+F EA+ VV
Sbjct: 55 AKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTL 114
Query: 106 -------SVD---GLA----IAIQVNIFNCGNVAIAVMISHRIEDGSSLITFTKTWAAVA 151
+VD G++ + +QV F CG V++ V + H DG S + F +W+ +A
Sbjct: 115 ELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
Query: 152 RGESENILPEFVAAKLF----------------PPKDAGGSSGTSFDPRPKKVVLKKFLF 195
RG + LP F+ L PP S T+ + + F
Sbjct: 175 RG-LDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKL 233
Query: 196 EGSKITTLRDKYGLD-NLIYPTRVEALSAFLWSRLAASTRIKVSPERPCMLVHAVNLRKR 254
+I+ L+ K D N I + E L+ +W R A R + ++ L A + R R
Sbjct: 234 TREQISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKAR-GLEVDQGTKLYIATDGRAR 291
Query: 255 MEPQLPADSFGNLFAFAVTI-----LEENHDNRMVNKFRDAIGKIDKDYLKAKNVEHSEL 309
+ P LP FGN+ A I LE +K DA+ ++D DYL++ +++ EL
Sbjct: 292 LRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSA-LDYLEL 350
Query: 310 ---IDLAITNGERFDKVELGYCIISSLCKFPVYEADFGLGKPISVAWGCFPYKNVIHFMD 366
+ + F LG I+S + P+++ADFG G+PI + G Y+ + +
Sbjct: 351 QPDLKALVRGAHTFKCPNLG---ITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILP 407
Query: 367 TKSGDG-IEVWVHLEEEVMAIFEN 389
+ + DG + V + L+ E M +F++
Sbjct: 408 SPTNDGSMSVAISLQGEHMKLFQS 431
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/451 (26%), Positives = 199/451 (44%), Gaps = 84/451 (18%)
Query: 1 MKIDVETMSKEMIKPSTPTPSQLRHYQFSHLDQIGPPVYISLLYFY------HLDDHKLV 54
MKI+V+ + M++P+ TP R+ S++D + P + +YFY + D K++
Sbjct: 6 MKIEVKEST--MVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVL 61
Query: 55 XXXXXXXXXXXXXXXXXXTKYYPLAGRIKNNY-----VDCNDEGVVFSEAKEKDVV---- 105
+YP+AGR+K + ++CN EGV+F EA+ VV
Sbjct: 62 KDALSRAL----------VPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFG 111
Query: 106 -------------SVD---GLA----IAIQVNIFNCGNVAIAVMISHRIEDGSSLITFTK 145
+VD G++ + +QV F G V++ V + H DG S + F
Sbjct: 112 DFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFIN 171
Query: 146 TWAAVARGESENILPEFVAAKLF-----------------PPKDAGGSSGTSFDPRPKKV 188
+W+ +ARG + LP F+ L PP A + D P+
Sbjct: 172 SWSDMARG-LDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETA 230
Query: 189 VLKKFLFEGSKITTLRDKYGLD-NLIYPTRVEALSAFLWSRLAASTRIKVSPERPCMLVH 247
V F +I+ L+ K D N I + E L+ +W R A R + ++ L
Sbjct: 231 V-SIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVW-RCACKAR-GLEVDQGTKLYI 287
Query: 248 AVNLRKRMEPQLPADSFGNLFAFAVTI-----LEENHDNRMVNKFRDAIGKIDKDYLKAK 302
A + R R+ P LP FGN+ A I LE +K DA+ ++D DYL++
Sbjct: 288 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSA 347
Query: 303 NVEHSEL---IDLAITNGERFDKVELGYCIISSLCKFPVYEADFGLGKPISVAWGCFPYK 359
+++ EL + + F LG I+S + P+++ADFG G+PI + G Y+
Sbjct: 348 -LDYLELQPDLKALVRGAHTFKXPNLG---ITSWVRLPIHDADFGWGRPIFMGPGGIAYE 403
Query: 360 NVIHFMDTKSGDG-IEVWVHLEEEVMAIFEN 389
+ + + + DG + V + L+ E M +F++
Sbjct: 404 GLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 122/319 (38%), Gaps = 49/319 (15%)
Query: 113 AIQVNIFNCGNVAIAVMISHRIEDGSSLITFTKTWAAVARGESENILPEFVAAKLFPPKD 172
++QV +F +AI + H + D S+ F K W ++AR S N F+A P D
Sbjct: 151 SVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIAR--SGNNDESFLANGTRPLYD 208
Query: 173 A------------GGSSGTSFD--------PRPKKVVLKKFLFEGSKITTLRDKY--GLD 210
+ SF+ P + F+ + I L+D+ L
Sbjct: 209 RIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLP 268
Query: 211 NLIYPTRVEALSAFLWSRLAASTRIKVSPERPCMLVHAVNLRKRMEPQLPADSFGNLFAF 270
L Y + A++WS +A S K+ + ++ R RM+P +P FGN
Sbjct: 269 TLEYVSSFTVACAYIWSCIAKSRNDKLQ-----LFGFPIDRRARMKPPIPTAYFGNCVGG 323
Query: 271 AVTILEENHDNRMVNKFRDAIGKIDKDYLKAKNVEHSELID----LAITNGERF-DKVEL 325
I + N ++ K G I L +N+ H L D + + E F D V
Sbjct: 324 CAAIAKTN---LLIGK----EGFITAAKLIGENL-HKTLTDYKDGVLKDDMESFNDLVSE 375
Query: 326 GY----CIISSLCKFPVYEADFGLGKPISVAWGCFPYKNVIHFMDTK-SGDGIEVWVHLE 380
G +S K Y+ DFG GKP + + I K S + +E+ V +
Sbjct: 376 GMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCIS 435
Query: 381 EEVMAIFEN--DQELLAYV 397
M F + D L AY+
Sbjct: 436 ATQMEDFVHIFDDGLKAYL 454
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 124/319 (38%), Gaps = 49/319 (15%)
Query: 113 AIQVNIFNCGNVAIAVMISHRIEDGSSLITFTKTWAAVARG--ESENIL-----PEFVAA 165
++QV +F +AI + H + D S+ F K W ++AR E+ L P +
Sbjct: 151 SVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRI 210
Query: 166 KLFPPKDAG---GSSGTSFD--------PRPKKVVLKKFLFEGSKITTLRDKY--GLDNL 212
+P D + SF+ P + F+ + I L+D+ L L
Sbjct: 211 IKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATFILTRAVINQLKDRVLAQLPTL 270
Query: 213 IYPTRVEALSAFLWSRLAASTRIKVSPERPCMLVHAVNLRKRMEPQLPADSFGNLFAFAV 272
Y + A++WS +A S K+ + ++ R R +P +P FGN
Sbjct: 271 EYVSSFTVACAYIWSCIAKSRNDKLQ-----LFGFPIDRRARXKPPIPTAYFGNCVGGCA 325
Query: 273 TILEENHDNRMVNKFRDAIGKIDKDYLKAKNVEHSELID----LAITNGERF-DKVELGY 327
I + N ++ K G I L +N+ H L D + + E F D V G
Sbjct: 326 AIAKTN---LLIGK----EGFITAAKLIGENL-HKTLTDYKDGVLKDDXESFNDLVSEGX 377
Query: 328 ----CIISSLCKFPVYEADFGLGKPISVAWGCFPYKNVIHFMDTK-SGDGIEVWVHLE-- 380
+S K Y+ DFG GKP + + I K S + +E+ V +
Sbjct: 378 PTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISAT 437
Query: 381 --EEVMAIFENDQELLAYV 397
E+ + IF D L AY+
Sbjct: 438 QXEDFVHIF--DDGLKAYL 454
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 127/339 (37%), Gaps = 71/339 (20%)
Query: 74 KYY-PLAGRI----------KNNYVDCNDEGVVFSE------------------------ 98
KYY PLAG + + YV N V+FSE
Sbjct: 69 KYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDFYHFVP 128
Query: 99 --AKEKDVVSVD-GLAIAIQVNIFNCGNVAIAVMISHRIEDGSSLITFTKTWAAVARGES 155
A+ KD V +AIQV +F ++I H DG++++ F + WA + +
Sbjct: 129 QLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGG 188
Query: 156 ENILPEFVAAKLFP------PKDAGGSSGTSFDPRPK--------KVVLKKFLFEGSKIT 201
+ +F+A + P KD G + ++ K VV G+ I
Sbjct: 189 DE---QFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFII 245
Query: 202 TLRDKYGLDNLI--------YPTRVEALSAFLWS---RLAASTRIKVSPERPCMLVHAVN 250
T D L NL+ + T A++W+ + A+T ++ A +
Sbjct: 246 TRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAAD 305
Query: 251 LRKRMEPQLPADSFGNLFAFAVTILEENHDNRMVNKFRDAIGKIDKDYLKAKNVEHSELI 310
R + P LP FGN V + D F A+ I + K E E I
Sbjct: 306 CRAQFNPPLPPSYFGNALVGYVARTRQV-DLAGKEGFTIAVELIGEAIRKRXKDE--EWI 362
Query: 311 DLAITNGERFDKVELGYCI-ISSLCKFPVYEADFGLGKP 348
L+ + + +DKV+ + ++ K +Y ADFG G+P
Sbjct: 363 -LSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRP 400
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 330 ISSLCKFPVYEADFG--LGKPISVAWGCF-PYKNVIHFMDTKSGDGIEVWVHLEEEVMAI 386
+SS K +E DFG LGKP SV F P++++ +F K + L +E
Sbjct: 385 LSSWAKVGCWEYDFGFGLGKPESVRRPRFEPFESLXYFXPKKPDGEFTASISLRDEDXER 444
Query: 387 FENDQELLAYV 397
+ D+E Y
Sbjct: 445 LKADEEWTKYA 455
>pdb|3AY2|A Chain A, Crystal Structure Of Neisserial Azurin
pdb|3AY2|B Chain B, Crystal Structure Of Neisserial Azurin
Length = 167
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 287 FRDAIGKIDKDYLK---AKNVEHSELIDLAITNGERFDKVELGYCIISSLCKFPVYEA 341
F+D +G D DY+K A+ V H++LI + D +L C FP + A
Sbjct: 100 FKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA 157
>pdb|1PQH|A Chain A, Serine 25 To Threonine Mutation Of Aspartate Decarboxylase
pdb|1PQH|B Chain B, Serine 25 To Threonine Mutation Of Aspartate Decarboxylase
Length = 143
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFD----KVELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 45 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 87
>pdb|1PQF|A Chain A, Glycine 24 To Serine Mutation Of Aspartate Decarboxylase
pdb|1PQF|B Chain B, Glycine 24 To Serine Mutation Of Aspartate Decarboxylase
Length = 143
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 45 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 87
>pdb|1PT1|A Chain A, Unprocessed Pyruvoyl Dependent Aspartate Decarboxylase
With Histidine 11 Mutated To Alanine
pdb|1PT1|B Chain B, Unprocessed Pyruvoyl Dependent Aspartate Decarboxylase
With Histidine 11 Mutated To Alanine
Length = 143
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFD----KVELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 45 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 87
>pdb|1PT0|A Chain A, Unprocessed Pyruvoyl Dependent Aspartate Decarboxylase
With An Alanine Insertion At Position 26
pdb|1PT0|B Chain B, Unprocessed Pyruvoyl Dependent Aspartate Decarboxylase
With An Alanine Insertion At Position 26
Length = 144
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFD----KVELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 46 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 88
>pdb|1PYQ|A Chain A, Unprocessed Aspartate Decarboxylase Mutant, With Alanine
Inserted At Position 24
pdb|1PYQ|B Chain B, Unprocessed Aspartate Decarboxylase Mutant, With Alanine
Inserted At Position 24
Length = 144
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFD----KVELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 46 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 88
>pdb|4AZD|A Chain A, T57v Mutant Of Aspartate Decarboxylase
pdb|4AZD|B Chain B, T57v Mutant Of Aspartate Decarboxylase
Length = 143
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFD----KVELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 45 IDQDFLDAAGILENEAIDIWNVTNGKRFSVYAIAAERGSRIIS 87
>pdb|1PPY|A Chain A, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
pdb|1PPY|B Chain B, Native Precursor Of Pyruvoyl Dependent Aspartate
Decarboxylase
Length = 126
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 28 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 70
>pdb|1PYU|B Chain B, Processed Aspartate Decarboxylase Mutant With Ser25
Mutated To Cys
pdb|1PYU|D Chain D, Processed Aspartate Decarboxylase Mutant With Ser25
Mutated To Cys
Length = 102
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 4 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 46
>pdb|1PQE|A Chain A, S25a Mutant Of Pyruvoyl Dependent Aspartate Decarboxylase
Length = 126
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 28 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 70
>pdb|4AOK|B Chain B, Conformational Dynamics Of Aspartate Alpha-Decarboxylase
Active Site Revealed By Protein-Ligand Complexes:
1-Methyl- L-Aspartate Complex
pdb|4AOK|E Chain E, Conformational Dynamics Of Aspartate Alpha-Decarboxylase
Active Site Revealed By Protein-Ligand Complexes:
1-Methyl- L-Aspartate Complex
Length = 102
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 4 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 46
>pdb|4AON|E Chain E, Conformational Dynamics Of Aspartate Alpha-Decarboxylase
Active Site Revealed By Protein-Ligand Complexes:
1-Methyl- L-Aspartate Complex
pdb|1AW8|B Chain B, Pyruvoyl Dependent Aspartate Decarboxylase
Length = 92
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 5 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 47
>pdb|3TM7|B Chain B, Processed Aspartate Decarboxylase Mutant With Asn72
Mutated To Ala
pdb|3TM7|D Chain D, Processed Aspartate Decarboxylase Mutant With Asn72
Mutated To Ala
Length = 102
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 4 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 46
>pdb|1AW8|E Chain E, Pyruvoyl Dependent Aspartate Decarboxylase
Length = 91
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 4 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 46
>pdb|4AON|B Chain B, Conformational Dynamics Of Aspartate Alpha-Decarboxylase
Active Site Revealed By Protein-Ligand Complexes:
1-Methyl- L-Aspartate Complex
Length = 99
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 294 IDKDYLKAKNVEHSELIDL-AITNGERFDK----VELGYCIIS 331
ID+D+L A + +E ID+ +TNG+RF E G IIS
Sbjct: 5 IDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIIS 47
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 339 YEADFGLGKPISVAWGCFPYKNVIHFMDTKSGDGIEVWVHLEEEVMAIFEND 390
Y DFG + G +++ + M + G+ + VW+H+E E F+N+
Sbjct: 31 YARDFGHNQYSK---GKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNN 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,683,201
Number of Sequences: 62578
Number of extensions: 479225
Number of successful extensions: 1129
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 30
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)