BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047400
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ + A+EGI+KI T +L+ +S Q+LVDC +R C GGF+ +Q++I N G
Sbjct: 23 GSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGG 82
Query: 65 INTERDYPNVGVMDNCKV 82
INTE +YP C +
Sbjct: 83 INTEANYPYTAEEGQCNL 100
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V A+E I+KI T L+ +S Q+LVDCD S C GG++ +QY+I N G
Sbjct: 23 GSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT--ASHGCNGGWMNNAFQYIITNGG 80
Query: 65 INTERDYPNVGVMDNCKVFQF 85
I+T+++YP V +CK ++
Sbjct: 81 IDTQQNYPYSAVQGSCKPYRL 101
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ + A+EGI+KI T +L+ +S Q+LVDC +R C GGF+ +Q++I N G
Sbjct: 23 GSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINNGG 82
Query: 65 INTERDYPNVGVMDNCKV 82
INTE +YP C +
Sbjct: 83 INTEANYPYTAEEGQCNL 100
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 2 HPLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQ 61
+P GSCW F+ V IEGI+KI+T L+ +S Q+L+DC+ + S C GG+ T QYV+
Sbjct: 20 NPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR--SHGCDGGYQTTSLQYVVD 77
Query: 62 NRGINTERDYPNVGVMDNCKV 82
N G++TER+YP C+
Sbjct: 78 N-GVHTEREYPYEKKQGRCRA 97
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
G CW F+ + +EGI+KIVT L+ +S Q+L+DC +R C GG+I +Q++I N G
Sbjct: 23 GGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGG 82
Query: 65 INTERDYPNVGVMDNCKV 82
INTE +YP C V
Sbjct: 83 INTEENYPYTAQDGECNV 100
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V +E I++I T NL+ +S QQLVDC + + C GG+ + YQY+I N G
Sbjct: 23 GSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK--NHGCKGGYFDRAYQYIIANGG 80
Query: 65 INTERDYPNVGVMDNCKVFQ 84
I+TE +YP C+ +
Sbjct: 81 IDTEANYPYKAFQGPCRAAK 100
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L+++S Q LVDC E+ C GG++ +QYV +NRG
Sbjct: 122 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGGGYMTNAFQYVQKNRG 179
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 180 IDSEDAYPYVGQEESC 195
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L+++S Q LVDC + E+ C GG++ +QYV +NRG
Sbjct: 23 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRG 80
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 81 IDSEDAYPYVGQEESC 96
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With
7-Methyl- Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With
7-Methyl- Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Symmetric
Diacylaminomethyl Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Propanone
Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Pyrrolidinone
Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Pyrrolidinone
Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin
Sulfate Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective
2-Cyano-Pyrimidine Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L+++S Q LVDC + E+ C GG++ +QYV +NRG
Sbjct: 23 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRG 80
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 81 IDSEDAYPYVGQEESC 96
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L+++S Q LVDC + E+ C GG++ +QYV +NRG
Sbjct: 25 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRG 82
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 83 IDSEDAYPYVGQEESC 98
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L+++S Q LVDC + E+ C GG++ +QYV +NRG
Sbjct: 22 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRG 79
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 80 IDSEDAYPYVGQEESC 95
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L+++S Q LVDC + E+ C GG++ +QYV +NRG
Sbjct: 21 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRG 78
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 79 IDSEDAYPYVGQEESC 94
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V +E I++I T NL+ +S QQLVDC+ + + C GG YQY+I N G
Sbjct: 23 GSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK--NHGCKGGAFVYAYQYIIDNGG 80
Query: 65 INTERDYPNVGVMDNCKVFQ 84
I+TE +YP V C+ +
Sbjct: 81 IDTEANYPYKAVQGPCRAAK 100
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L+++S Q LVDC + E+ C GG++ +QYV +NRG
Sbjct: 23 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQRNRG 80
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 81 IDSEDAYPYVGQDESC 96
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 83 GIDSDASYPYKAMDQKCQ 100
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V +E I++I T NL+ +S Q+LVDCD ++ C+GG YQY+I N G
Sbjct: 23 GSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHGCLGGAFVFAYQYIINNGG 80
Query: 65 INTERDYPNVGVMDNCKV 82
I+T+ +YP V C+
Sbjct: 81 IDTQANYPYKAVQGPCQA 98
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 24 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 83
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 84 GIDSDASYPYKAMDQKCQ 101
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 83 GIDSDASYPYKAMDQKCQ 100
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 83 GIDSDASYPYKAMDQKCQ 100
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 83 GIDSDASYPYKAMDQKCQ 100
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 26 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 85
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 86 GIDSDASYPYKAMDQKCQ 103
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V A+EGI++IVT +L+ +S QQLVDC + C GG++ +Q+++ N G
Sbjct: 25 GSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA--NHGCRGGWMNPAFQFIVNNGG 82
Query: 65 INTERDYPNVG 75
IN+E YP G
Sbjct: 83 INSEETYPYRG 93
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 24 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 83
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 84 GIDSDASYPYKAMDQKCQ 101
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VGA+EG K T L++++ Q LVDC + E+ C GG++ +QYV +NRG
Sbjct: 23 GSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVS--ENDGCGGGYMTNAFQYVQRNRG 80
Query: 65 INTERDYPNVGVMDNC 80
I++E YP VG ++C
Sbjct: 81 IDSEDAYPYVGQDESC 96
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+EG T LV +S Q LVDC ++ C GGF+ +QYV +N G
Sbjct: 23 GSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP V V + CK
Sbjct: 83 LDSEESYPYVAVDEICK 99
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+CW F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 83 GIDSDASYPYKAMDQKCQ 100
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ + A+EGI++I TN LV +S Q+LVDCD +++ C GG ++ ++++ Q G
Sbjct: 24 GSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD-QNQGCNGGLMDYAFEFIKQRGG 82
Query: 65 INTERDYPNVGVMDNCKVFQFN 86
I TE +YP C V + N
Sbjct: 83 ITTEANYPYEAYDGTCDVSKEN 104
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
G W F+ + +EGI+KI + +L+ +S Q+L+DC +R C GG+I +Q++I + G
Sbjct: 23 GGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFIINDGG 82
Query: 65 INTERDYPNVGVMDNCKV 82
INTE +YP +C V
Sbjct: 83 INTEENYPYTAQDGDCDV 100
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+ W F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 121 GAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 180
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 181 GIDSDASYPYKAMDQKCQ 198
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+ W F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 23 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 83 GIDSDASYPYKAMDQKCQ 100
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+ W F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 25 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 84
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 85 GIDSDASYPYKAMDQKCQ 102
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+ W F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 24 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 83
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 84 GIDSDASYPYKAMDQKCQ 101
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 6 SCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGI 65
SCW F+ V +EGI+KI T NLV++S Q+LVDCD Q S C G+ T QYV QN GI
Sbjct: 24 SCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ--SYGCNRGYQSTSLQYVAQN-GI 80
Query: 66 NTERDYPNVGVMDNCKVFQ 84
+ YP + C+ Q
Sbjct: 81 HLRAKYPYIAKQQTCRANQ 99
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T LV +S Q LVDC ++ C GGF+ +QYV +N G
Sbjct: 23 GSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP V V + CK
Sbjct: 83 LDSEESYPYVAVDEICK 99
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGE-SRSCVGGFIETIYQYVIQNR 63
G+ W F+ VGA+E K+ T LV +S Q LVDC + ++ C GGF+ T +QY+I N+
Sbjct: 23 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 64 GINTERDYPNVGVMDNCK 81
GI+++ YP + C+
Sbjct: 83 GIDSDASYPYKAMDLKCQ 100
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ + +EGI+KIVT NL+++S Q+LVDCD S C GG+ T QYV N G
Sbjct: 23 GSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH--SYGCKGGYQTTSLQYVANN-G 79
Query: 65 INTERDYPNVGVMDNCKV 82
++T + YP C+
Sbjct: 80 VHTSKVYPYQAKQYKCRA 97
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+E I T ++ ++ QQLVDC + C GG ++Y+ N+G
Sbjct: 24 GSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKG 83
Query: 65 INTERDYPNVGVMDNCK 81
I E YP G D+CK
Sbjct: 84 IMGEDTYPYKGQDDHCK 100
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V +EGI+KI T LV++S Q+LVDC+ + S C GG+ +YV +N G
Sbjct: 23 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR--SHGCKGGYPPYALEYVAKN-G 79
Query: 65 INTERDYPNVGVMDNCKVFQ 84
I+ YP C+ Q
Sbjct: 80 IHLRSKYPYKAKQGTCRAKQ 99
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V +EGI+KI T LV++S Q+LVDC+ + S C GG+ +YV +N G
Sbjct: 23 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR--SHGCKGGYPPYALEYVAKN-G 79
Query: 65 INTERDYPNVGVMDNCKVFQ 84
I+ YP C+ Q
Sbjct: 80 IHLRSKYPYKAKQGTCRAKQ 99
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 61 GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 120
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 121 LDSEESYPYEATEESCK 137
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 24 GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 83
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 84 LDSEESYPYEATEESCK 100
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+EG T LV +S Q+L+DC ++SC GG + +QYV+ + G
Sbjct: 29 GSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGG 88
Query: 65 INTERDYPNVGVMDNCKV 82
I +E YP + + C+
Sbjct: 89 ICSEDAYPYLARDEECRA 106
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V ++EGI+ I T +LV +S Q+L+DCD ++ C GG ++ ++Y+ N G
Sbjct: 26 GSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDT-ADNDGCQGGLMDNAFEYIKNNGG 84
Query: 65 INTERDYPNVGVMDNCKVFQ 84
+ TE YP C V +
Sbjct: 85 LITEAAYPYRAARGTCNVAR 104
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V +EGI+KI T LV++S Q+LVDC+ + S C GG+ +YV +N G
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR--SHGCKGGYPPYALEYVAKN-G 185
Query: 65 INTERDYPNVGVMDNCKVFQ 84
I+ YP C+ Q
Sbjct: 186 IHLRSKYPYKAKQGTCRAKQ 205
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
G CW F GAIEGI I T L+ +S QQ+VDCD GG + +++VI N G
Sbjct: 23 GMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX--XXXXXGGDADDAFRWVITNGG 80
Query: 65 INTERDYPNVGVMDNCKV 82
I ++ +YP GV C +
Sbjct: 81 IASDANYPYTGVDGTCDL 98
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 24 GSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 83
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 84 LDSEESYPYEATEESCK 100
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
In Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
In Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of
Cathepsin L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of
Cathepsin L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 115 GSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGG 174
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 175 LDSEESYPYEATEESCK 191
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 62.8 bits (151), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 119 GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 178
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 179 LDSEESYPYEATEESCK 195
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GAIE I T NLV +S Q+L+DC + ES C G+ +++V+++ G
Sbjct: 24 GSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVD--ESEGCYNGWHYQSFEWVVKHGG 81
Query: 65 INTERDYPNVGVMDNCKV 82
I +E DYP CK
Sbjct: 82 IASEADYPYKARDGKCKA 99
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
G+ + F+ GA+EG T L+ +S Q LVDC + C GG ++ +QYV N G
Sbjct: 23 GASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 82
Query: 65 INTERDYPNVGVMDNCK 81
+++E YP ++CK
Sbjct: 83 LDSEESYPYEATEESCK 99
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V IEGI KI T NL + S Q+L+DCD + S C GG+ + Q V Q G
Sbjct: 23 GSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR--SYGCNGGYPWSALQLVAQ-YG 79
Query: 65 INTERDYPNVGVMDNCK 81
I+ YP GV C+
Sbjct: 80 IHYRNTYPYEGVQRYCR 96
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V IEGI KI T NL S Q+L+DCD + S C GG+ + Q V Q G
Sbjct: 23 GSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR--SYGCNGGYPWSALQLVAQ-YG 79
Query: 65 INTERDYPNVGVMDNCK 81
I+ YP GV C+
Sbjct: 80 IHYRNTYPYEGVQRYCR 96
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent
Binding Mode Of A Common Sequence Of Endogenous Thiol
Protease Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design
Of Cathepsin K Inhibitors. Crystal Structures Of Two
Papain Inhibitor Complexes Demonstrate Binding To
S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design
Of Cathepsin K Inhibitors. Crystal Structures Of Two
Papain Inhibitor Complexes Demonstrate Binding To
S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V IEGI KI T NL S Q+L+DCD + S C GG+ + Q V Q G
Sbjct: 23 GSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR--SYGCNGGYPWSALQLVAQ-YG 79
Query: 65 INTERDYPNVGVMDNCK 81
I+ YP GV C+
Sbjct: 80 IHYRNTYPYEGVQRYCR 96
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V A+EGI+KIVT L+ +S Q+L+DC+ + S C GGF QYV N G
Sbjct: 23 GSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR--SYGCRGGFPLYALQYVA-NSG 79
Query: 65 INTERDYPNVGVMDNCKVFQ 84
I+ + YP GV C+ Q
Sbjct: 80 IHLRQYYPYEGVQRQCRASQ 99
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ V IEGI KI T NL + S Q+L+DCD + S C GG+ + Q V Q G
Sbjct: 23 GSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR--SYGCNGGYPWSALQLVAQ-YG 79
Query: 65 INTERDYPNVGVMDNCK 81
I+ YP GV C+
Sbjct: 80 IHYRNTYPYEGVQRYCR 96
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ V IE I KI T NL + S Q+L+DCD + S C GG+ + Q V Q G
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR--SYGCNGGYPWSALQLVAQ-YG 230
Query: 65 INTERDYPNVGVMDNCK 81
I+ YP GV C+
Sbjct: 231 IHYRNTYPYEGVQRYCR 247
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ V IEGI KI T NL S Q+L+DCD + S C GG+ + Q V Q G
Sbjct: 23 GSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR--SYGCNGGYPWSALQLVAQ-YG 79
Query: 65 INTERDYPNVGVMDNCK 81
I+ YP GV C+
Sbjct: 80 IHYRNTYPYEGVQRYCR 96
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ V IEGI KI T NL S Q+L+DCD + S C GG+ + Q V Q G
Sbjct: 23 GSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR--SYGCNGGYPWSALQLVAQ-YG 79
Query: 65 INTERDYPNVGVMDNCK 81
I+ YP GV C+
Sbjct: 80 IHYRNTYPYEGVQRYCR 96
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ G +EG + S QQLVDC + C GG +E YQY+ Q G
Sbjct: 114 GSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQ-FG 172
Query: 65 INTERDYPNVGVMDNCK 81
+ TE YP V C+
Sbjct: 173 LETESSYPYTAVEGQCR 189
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVD--ISTQQLVDCDNQGESRSCVGGFIETIYQYVIQN 62
GS W F+ GAIE KI D +S QQLVDC + C GG++ + YV QN
Sbjct: 138 GSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDC--VPNALGCSGGWMNDAFTYVAQN 195
Query: 63 RGINTERDYPNVGVMDNC 80
GI++E YP NC
Sbjct: 196 GGIDSEGAYPYEMADGNC 213
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ GA+EG + L +S Q L+DC + + C GG++++ + Y I + G
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IHDYG 195
Query: 65 INTERDYPNVGVMDNCK 81
I +E YP D C+
Sbjct: 196 IMSESAYPYEAQGDYCR 212
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ +G++E I N L+ +S Q+LVDC + + C GG I ++ +I+ G
Sbjct: 40 GSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--NYGCNGGLINNAFEDMIELGG 97
Query: 65 INTERDYPNVGVMDN 79
I + DYP V N
Sbjct: 98 ICPDGDYPYVSDAPN 112
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ +G IEG ++ N LV +S Q LV CD C GG ++ + +++ + G
Sbjct: 23 GSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI--DFGCGGGLMDNAFNWIVNSNG 80
Query: 65 IN--TERDYPNV 74
N TE YP V
Sbjct: 81 GNVFTEASYPYV 92
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V A E N +D+S Q+LVDC +Q C G I +Y+ QN G
Sbjct: 33 GSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQ---HGCHGDTIPRGIEYIQQN-G 88
Query: 65 INTERDYPNVGVMDNCK 81
+ ER YP V C+
Sbjct: 89 VVEERSYPYVAREQRCR 105
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ +G++E I N L+ +S Q+LVDC + + C GG I ++ +I+ G
Sbjct: 39 GSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--NYGCNGGLINNAFEDMIELGG 96
Query: 65 INTERDYPNV 74
I + DYP V
Sbjct: 97 ICPDGDYPYV 106
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ VG++E I L S Q+LVDC + + C GG+I + +I G
Sbjct: 42 GSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK--NNGCYGGYITNAFDDMIDLGG 99
Query: 65 INTERDYPNV 74
+ ++ DYP V
Sbjct: 100 LCSQDDYPYV 109
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQ--N 62
GSCW F+ +G +E + + L ++S Q LV CD C GG + +++++Q N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT--DSGCSGGLMNNAFEWIVQENN 80
Query: 63 RGINTERDYP 72
+ TE YP
Sbjct: 81 GAVYTEDSYP 90
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non- Covalently Bound To A Hydroxymethyl Ketone
Inhibitor (Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone
Inhibitor (I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A
Purine Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQ--N 62
GSCW F+ +G +E + + L ++S Q LV CD C GG + +++++Q N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT--DSGCSGGLMNNAFEWIVQENN 80
Query: 63 RGINTERDYP 72
+ TE YP
Sbjct: 81 GAVYTEDSYP 90
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+V G +EG + L+ +S Q+L+DCD ++C+GG Y + G
Sbjct: 23 GSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM--DKACMGGLPSNAYSAIKNLGG 80
Query: 65 INTERDYPNVGVMDNCK 81
+ TE DY G M +C+
Sbjct: 81 LETEDDYSYQGHMQSCQ 97
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQ--N 62
GSCW F+ +G +E + + L +++ Q LV CD C GG + +++++Q N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT--DSGCSGGLMNNAFEWIVQENN 80
Query: 63 RGINTERDYP 72
+ TE YP
Sbjct: 81 GAVYTEDSYP 90
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To
The Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To
The Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQ--N 62
GSCW F+ +G +E + + L +++ Q LV CD C GG + +++++Q N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT--DSGCSGGLMNNAFEWIVQENN 80
Query: 63 RGINTERDYP 72
+ TE YP
Sbjct: 81 GAVYTEDSYP 90
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVD--ISTQQLVDCDNQGESRSCVGGFIETIYQYVIQN 62
GSC+ FA +G +E +I+TNN +S Q++V C ++ C GGF I Q+
Sbjct: 26 GSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQY--AQGCEGGFPYLIAGKYAQD 83
Query: 63 RGINTERDYPNVGVMDNCKV 82
G+ E +P G CK+
Sbjct: 84 FGLVEEACFPYTGTDSPCKM 103
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVD--ISTQQLVDCDNQGESRSCVGGFIETIYQYVIQN 62
GSC+ FA +G +E +I+TNN +S Q++V C ++ C GGF I Q+
Sbjct: 232 GSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQY--AQGCEGGFPYLIAGKYAQD 289
Query: 63 RGINTERDYPNVGVMDNCKV 82
G+ E +P G CK+
Sbjct: 290 FGLVEEACFPYTGTDSPCKM 309
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V A E N +D++ Q+LVDC +Q C G I +Y IQ+ G
Sbjct: 32 GSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ---HGCHGDTIPRGIEY-IQHNG 87
Query: 65 INTERDYPNVGVMDNCK 81
+ E Y V +C+
Sbjct: 88 VVQESYYRYVAREQSCR 104
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GSCW F+ V A E +D++ Q+LVDC +Q C G I +Y IQ+ G
Sbjct: 32 GSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ---HGCHGDTIPRGIEY-IQHNG 87
Query: 65 INTERDYPNVGVMDNCK 81
+ E Y V +C+
Sbjct: 88 VVQESYYRYVAREQSCR 104
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVD--ISTQQLVDCDNQGESRSCVGGFIETIYQYVIQN 62
GSC+ FA +G +E +I+TNN +S Q++V C ++ C GGF I Q+
Sbjct: 231 GSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPY--AQGCDGGFPYLIAGKYAQD 288
Query: 63 RGINTERDYPNVGVMDNCK 81
G+ E +P CK
Sbjct: 289 FGVVEENCFPYTATDAPCK 307
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ V A E + +D++ Q+LVDC +Q C G I +Y IQ+ G
Sbjct: 112 GSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ---HGCHGDTIPRGIEY-IQHNG 167
Query: 65 INTERDYPNVGVMDNCK 81
+ E Y V +C+
Sbjct: 168 VVQESYYRYVAREQSCR 184
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRG 64
GS W F+ V A E +D++ Q+LVDC +Q C G I +Y IQ+ G
Sbjct: 32 GSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ---HGCHGDTIPRGIEY-IQHNG 87
Query: 65 INTERDYPNVGVMDNCK 81
+ E Y V +C+
Sbjct: 88 VVQESYYRYVAREQSCR 104
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQY 58
GSCW F V AI I TN V++S + L+ C C GG+ + +
Sbjct: 90 GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNF 145
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQY 58
GSCW F V AI I TN V++S + L+ C C GG+ + +
Sbjct: 29 GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNF 84
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQY 58
GSCW F V AI I TN V++S + L+ C C GG+ + +
Sbjct: 27 GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNF 82
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQY 58
GSCW F V AI I TN V++S + L+ C C GG+ + +
Sbjct: 28 GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNF 83
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQY 58
GSCW F V A+ I TN V++S + L+ C C GG+ + +
Sbjct: 27 GSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNF 82
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQY 58
GSCW F V A+ I TN V++S + L+ C C GG+ + +
Sbjct: 33 GSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNF 88
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 3 PLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCV--GGFI 52
P+ + W++ ++G I G+ V N+LV + TQ + + GE + V GG I
Sbjct: 248 PVNTLWLYLILGIIFGVVGPVFNSLV-LRTQDMFQRFHGGEIKKWVLMGGAI 298
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 5 GSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQN 62
GSCW F V A+ S I + V++S L+ C + C GG + + Y ++
Sbjct: 29 GSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSC-CESCGLGCEGGILGPAWDYWVKE 87
Query: 63 RGINTERDYPNVGVMDNCKVFQFNWC 88
GI T N C+ + F C
Sbjct: 88 -GIVTGSSKEN---HAGCEPYPFPKC 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,674,617
Number of Sequences: 62578
Number of extensions: 91374
Number of successful extensions: 296
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 96
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)