Query 047400
Match_columns 88
No_of_seqs 182 out of 1121
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.3E-32 5.1E-37 193.7 6.3 82 2-85 176-258 (372)
2 KOG1543 Cysteine proteinase Ca 99.9 5.4E-28 1.2E-32 172.1 8.4 82 1-84 128-211 (325)
3 PTZ00200 cysteine proteinase; 99.9 4.2E-27 9.1E-32 173.2 8.0 80 2-84 253-333 (448)
4 PTZ00203 cathepsin L protease; 99.9 6.7E-27 1.5E-31 167.8 8.0 79 2-82 145-228 (348)
5 PTZ00021 falcipain-2; Provisio 99.9 7.2E-27 1.6E-31 173.2 7.3 80 2-83 285-365 (489)
6 cd02620 Peptidase_C1A_Cathepsi 99.9 5E-26 1.1E-30 155.5 8.2 76 2-79 23-100 (236)
7 cd02698 Peptidase_C1A_Cathepsi 99.9 4.2E-26 9.1E-31 156.1 7.6 78 1-82 25-105 (239)
8 cd02621 Peptidase_C1A_Cathepsi 99.9 6.5E-26 1.4E-30 155.2 8.1 80 2-84 24-110 (243)
9 PTZ00364 dipeptidyl-peptidase 99.9 1.8E-25 3.9E-30 167.5 8.5 78 3-83 231-319 (548)
10 PTZ00049 cathepsin C-like prot 99.9 2.7E-25 5.9E-30 169.1 8.6 80 1-83 403-492 (693)
11 cd02248 Peptidase_C1A Peptidas 99.9 4.5E-24 9.8E-29 142.1 8.5 80 2-83 19-98 (210)
12 smart00645 Pept_C1 Papain fami 99.9 5.2E-24 1.1E-28 140.0 7.1 73 2-75 20-92 (174)
13 PTZ00462 Serine-repeat antigen 99.9 9.3E-23 2E-27 159.3 8.7 84 2-86 551-638 (1004)
14 PF00112 Peptidase_C1: Papain 99.9 2.3E-22 4.9E-27 133.7 7.4 81 2-84 21-104 (219)
15 cd02619 Peptidase_C1 C1 Peptid 99.8 5.7E-21 1.2E-25 127.1 7.9 78 2-81 16-100 (223)
16 KOG1544 Predicted cysteine pro 99.6 6.9E-17 1.5E-21 115.1 -2.4 72 2-75 230-303 (470)
17 COG4870 Cysteine protease [Pos 97.2 5.5E-05 1.2E-09 55.1 -0.6 23 2-24 118-140 (372)
18 cd00585 Peptidase_C1B Peptidas 96.8 0.0018 3.8E-08 48.5 4.1 70 3-74 62-159 (437)
19 PF03051 Peptidase_C1_2: Pepti 96.6 0.0058 1.3E-07 45.8 5.3 71 4-75 64-161 (438)
20 COG3579 PepC Aminopeptidase C 53.5 39 0.00085 25.3 4.8 29 46-75 135-163 (444)
21 KOG2735 Phosphatidylserine syn 47.0 14 0.00031 27.9 1.8 21 7-27 375-395 (466)
22 COG1854 LuxS LuxS protein invo 42.1 17 0.00037 23.9 1.4 35 11-52 51-87 (161)
23 PF12301 CD99L2: CD99 antigen 33.8 56 0.0012 21.7 2.9 30 7-37 123-152 (169)
24 PF05543 Peptidase_C47: Stapho 28.2 1.1E+02 0.0024 20.5 3.5 49 7-66 25-81 (175)
25 PRK02260 S-ribosylhomocysteina 24.9 61 0.0013 21.3 1.9 37 11-52 51-87 (158)
26 PF04060 FeS: Putative Fe-S cl 23.5 65 0.0014 15.5 1.4 8 6-13 14-21 (35)
27 PF14190 DUF4313: Domain of un 22.8 95 0.0021 18.9 2.3 28 53-83 54-81 (105)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-32 Score=193.67 Aligned_cols=82 Identities=38% Similarity=0.818 Sum_probs=78.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCcccccCCC-Cc
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVGVMD-NC 80 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C 80 (88)
|.||||||||++++||+++.|++++++.|||||||||+.. ++ ||+||.+..||+|+++.+||..|.+|||+++++ .|
T Consensus 176 G~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~-d~-gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C 253 (372)
T KOG1542|consen 176 GMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSC-DN-GCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQC 253 (372)
T ss_pred CcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCc-CC-cCCCCChhHHHHHHHHhCCccccccCCccccCCCcc
Confidence 7899999999999999999999999999999999999987 77 999999999999988888999999999999998 89
Q ss_pred ccCCC
Q 047400 81 KVFQF 85 (88)
Q Consensus 81 ~~~~~ 85 (88)
+.++.
T Consensus 254 ~~~~~ 258 (372)
T KOG1542|consen 254 HFDKS 258 (372)
T ss_pred ccchh
Confidence 98763
No 2
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-28 Score=172.13 Aligned_cols=82 Identities=37% Similarity=0.672 Sum_probs=76.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhC-CCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccC-CCCcccccCCC
Q 047400 1 PHPLGSCWIFAVVGAIEGISKIVTN-NLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINT-ERDYPNVGVMD 78 (88)
Q Consensus 1 pg~CgsCwAfa~~~~ie~~~~i~~~-~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~-e~~yPY~~~~~ 78 (88)
+|.||||||||++++||++++|+++ .++.||+||||||+...++ ||.||.+..||+|++++ |+++ +.+|||.+.++
T Consensus 128 Qg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~-GC~GG~~~~A~~yi~~~-G~~t~~~~Ypy~~~~~ 205 (325)
T KOG1543|consen 128 QGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGD-GCNGGEPKNAFKYIKKN-GGVTECENYPYIGKDG 205 (325)
T ss_pred CCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCC-CcCCCCHHHHHHHHHHh-CCCCCCcCCCCcCCCC
Confidence 4789999999999999999999999 8999999999999986465 99999999999999999 6666 99999999999
Q ss_pred CcccCC
Q 047400 79 NCKVFQ 84 (88)
Q Consensus 79 ~C~~~~ 84 (88)
.|+.+.
T Consensus 206 ~C~~~~ 211 (325)
T KOG1543|consen 206 TCKSNK 211 (325)
T ss_pred CccCCC
Confidence 999876
No 3
>PTZ00200 cysteine proteinase; Provisional
Probab=99.94 E-value=4.2e-27 Score=173.24 Aligned_cols=80 Identities=36% Similarity=0.760 Sum_probs=74.4
Q ss_pred C-CCchHHHHHHHHHHHHHHHHHhCCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCcccccCCCCc
Q 047400 2 H-PLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVGVMDNC 80 (88)
Q Consensus 2 g-~CgsCwAfa~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C 80 (88)
| .||||||||++++||++++|+++.++.||+||||||+.. +. ||+||++..||+|++++ ||++|++|||++.++.|
T Consensus 253 G~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~~-~~-GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C 329 (448)
T PTZ00200 253 GLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTK-SQ-GCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKC 329 (448)
T ss_pred CCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccCc-cC-CCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCC
Confidence 5 899999999999999999999999999999999999875 65 99999999999999888 99999999999999999
Q ss_pred ccCC
Q 047400 81 KVFQ 84 (88)
Q Consensus 81 ~~~~ 84 (88)
+.+.
T Consensus 330 ~~~~ 333 (448)
T PTZ00200 330 VVSS 333 (448)
T ss_pred cCCC
Confidence 7543
No 4
>PTZ00203 cathepsin L protease; Provisional
Probab=99.94 E-value=6.7e-27 Score=167.82 Aligned_cols=79 Identities=37% Similarity=0.740 Sum_probs=72.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhh--CCccCCCCcccccCCC-
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQN--RGINTERDYPNVGVMD- 78 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~- 78 (88)
|.||||||||++++||++++|++++++.||+||||||+.. +. ||+||++..||+|++++ +||.+|++|||++.++
T Consensus 145 g~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~-~~-GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~ 222 (348)
T PTZ00203 145 GACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV-DN-GCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGD 222 (348)
T ss_pred CCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC-CC-CCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCC
Confidence 6899999999999999999999999999999999999875 65 99999999999999864 5789999999998876
Q ss_pred --Cccc
Q 047400 79 --NCKV 82 (88)
Q Consensus 79 --~C~~ 82 (88)
.|+.
T Consensus 223 ~~~C~~ 228 (348)
T PTZ00203 223 VPECSN 228 (348)
T ss_pred CCcCCC
Confidence 5864
No 5
>PTZ00021 falcipain-2; Provisional
Probab=99.94 E-value=7.2e-27 Score=173.20 Aligned_cols=80 Identities=38% Similarity=0.749 Sum_probs=73.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCcccccCC-CCc
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVGVM-DNC 80 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~-~~C 80 (88)
|.||||||||++++||++++|++++++.||+||||||+.. +. ||+||++..||+|+++++||++|++|||++.. +.|
T Consensus 285 G~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~~-n~-GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C 362 (489)
T PTZ00021 285 KNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFK-NN-GCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELC 362 (489)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhccC-CC-CCCCcchHhhhhhhhhccccCcccccCccCCCCCcc
Confidence 6899999999999999999999999999999999999975 65 99999999999999887799999999999974 789
Q ss_pred ccC
Q 047400 81 KVF 83 (88)
Q Consensus 81 ~~~ 83 (88)
+.+
T Consensus 363 ~~~ 365 (489)
T PTZ00021 363 NID 365 (489)
T ss_pred ccc
Confidence 754
No 6
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=99.93 E-value=5e-26 Score=155.50 Aligned_cols=76 Identities=28% Similarity=0.460 Sum_probs=69.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhC--CCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCcccccCCCC
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTN--NLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVGVMDN 79 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~--~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~ 79 (88)
|.||||||||++++||+++.|+++ +.+.||+||||||+...+. ||+||++..+|+|++++ ||++|++|||++.+..
T Consensus 23 g~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~-gC~GG~~~~a~~~i~~~-G~~~e~~yPY~~~~~~ 100 (236)
T cd02620 23 GNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGD-GCNGGYPDAAWKYLTTT-GVVTGGCQPYTIPPCG 100 (236)
T ss_pred ccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCC-CCCCCCHHHHHHHHHhc-CCCcCCEecCcCCCCc
Confidence 679999999999999999999988 7799999999999875355 99999999999999998 9999999999987643
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=99.93 E-value=4.2e-26 Score=156.13 Aligned_cols=78 Identities=29% Similarity=0.546 Sum_probs=70.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhCC---CcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCcccccCC
Q 047400 1 PHPLGSCWIFAVVGAIEGISKIVTNN---LVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVGVM 77 (88)
Q Consensus 1 pg~CgsCwAfa~~~~ie~~~~i~~~~---~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~ 77 (88)
|+.||||||||++++||+++.|+++. .+.||+||||||+. +. ||+||++..+|+|++++ ||++|++|||++.+
T Consensus 25 ~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~-gC~GG~~~~a~~~~~~~-Gl~~e~~yPY~~~~ 100 (239)
T cd02698 25 PQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GG-SCHGGDPGGVYEYAHKH-GIPDETCNPYQAKD 100 (239)
T ss_pred CCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CC-CccCcCHHHHHHHHHHc-CcCCCCeeCCcCCC
Confidence 45899999999999999999998763 57899999999987 44 99999999999999998 99999999999988
Q ss_pred CCccc
Q 047400 78 DNCKV 82 (88)
Q Consensus 78 ~~C~~ 82 (88)
+.|+.
T Consensus 101 ~~C~~ 105 (239)
T cd02698 101 GECNP 105 (239)
T ss_pred CCCcC
Confidence 77763
No 8
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=99.93 E-value=6.5e-26 Score=155.23 Aligned_cols=80 Identities=30% Similarity=0.452 Sum_probs=72.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCC------CcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCccccc
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNN------LVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVG 75 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~------~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~ 75 (88)
|.||||||||++++||+++.|++++ .+.||+||||||+.. +. ||+||++..+++|++++ ||++|++|||++
T Consensus 24 g~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~-~~-GC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~ 100 (243)
T cd02621 24 GGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY-SQ-GCDGGFPFLVGKFAEDF-GIVTEDYFPYTA 100 (243)
T ss_pred CcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC-CC-CCCCCCHHHHHHHHHhc-CcCCCceeCCCC
Confidence 6799999999999999999998876 689999999999875 65 99999999999999998 999999999998
Q ss_pred -CCCCcccCC
Q 047400 76 -VMDNCKVFQ 84 (88)
Q Consensus 76 -~~~~C~~~~ 84 (88)
..+.|+.++
T Consensus 101 ~~~~~C~~~~ 110 (243)
T cd02621 101 DDDRPCKASP 110 (243)
T ss_pred CCCCCCCCCc
Confidence 778897543
No 9
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.92 E-value=1.8e-25 Score=167.47 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=69.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHhC------CCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCc--ccc
Q 047400 3 PLGSCWIFAVVGAIEGISKIVTN------NLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDY--PNV 74 (88)
Q Consensus 3 ~CgsCwAfa~~~~ie~~~~i~~~------~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y--PY~ 74 (88)
.||||||||++++||+|++|+++ ..+.||+||||||+.. ++ ||+||++..|++|++++ ||++|++| ||+
T Consensus 231 ~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~-n~-GCdGG~p~~A~~yi~~~-GI~tE~dY~~PY~ 307 (548)
T PTZ00364 231 GCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY-GQ-GCAGGFPEEVGKFAETF-GILTTDSYYIPYD 307 (548)
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC-CC-CCCCCcHHHHHHHHHhC-CcccccccCCCCC
Confidence 49999999999999999999884 4688999999999875 66 99999999999999988 99999999 998
Q ss_pred cCCC---CcccC
Q 047400 75 GVMD---NCKVF 83 (88)
Q Consensus 75 ~~~~---~C~~~ 83 (88)
+.++ .|+.+
T Consensus 308 ~~dg~~~~Ck~~ 319 (548)
T PTZ00364 308 SGDGVERACKTR 319 (548)
T ss_pred CCCCCCCCCCCC
Confidence 8766 58754
No 10
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.92 E-value=2.7e-25 Score=169.10 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhCCC----------cccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCC
Q 047400 1 PHPLGSCWIFAVVGAIEGISKIVTNNL----------VDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERD 70 (88)
Q Consensus 1 pg~CgsCwAfa~~~~ie~~~~i~~~~~----------~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~ 70 (88)
.|.||||||||++++||+|++|++++. ..||+|+||||+.. ++ ||+||++..|++|++++ ||++|++
T Consensus 403 QG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~-nq-GC~GG~~~~A~kya~~~-GI~tEsc 479 (693)
T PTZ00049 403 QLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY-DQ-GCNGGFPYLVSKMAKLQ-GIPLDKV 479 (693)
T ss_pred CccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC-CC-CcCCCcHHHHHHHHHHC-CCCcCCc
Confidence 368999999999999999999987431 27999999999875 76 99999999999999998 9999999
Q ss_pred cccccCCCCcccC
Q 047400 71 YPNVGVMDNCKVF 83 (88)
Q Consensus 71 yPY~~~~~~C~~~ 83 (88)
|||++..+.|+.+
T Consensus 480 YPY~a~~g~C~~~ 492 (693)
T PTZ00049 480 FPYTATEQTCPYQ 492 (693)
T ss_pred cCCcCCCCCCCCC
Confidence 9999988899754
No 11
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=99.91 E-value=4.5e-24 Score=142.09 Aligned_cols=80 Identities=44% Similarity=0.838 Sum_probs=73.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCcccccCCCCcc
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVGVMDNCK 81 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~ 81 (88)
|.||+|||||++++||++++|+++..+.||+|+|++|....+. +|.||++..++++++++ ||++|++|||.+....|+
T Consensus 19 g~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~-gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~C~ 96 (210)
T cd02248 19 GSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNN-GCNGGNPDNAFEYVKNG-GLASESDYPYTGKDGTCK 96 (210)
T ss_pred CCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCC-CCCCCCHHHhHHHHHHC-CcCccccCCccCCCCCcc
Confidence 6899999999999999999999998899999999999875344 99999999999999888 999999999999888887
Q ss_pred cC
Q 047400 82 VF 83 (88)
Q Consensus 82 ~~ 83 (88)
..
T Consensus 97 ~~ 98 (210)
T cd02248 97 YN 98 (210)
T ss_pred CC
Confidence 64
No 12
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.90 E-value=5.2e-24 Score=140.00 Aligned_cols=73 Identities=44% Similarity=0.859 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCccccc
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVG 75 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~ 75 (88)
|.||+|||||++++||+++.|++++.+.||+|+|+||....+. ||+||++..|++|+++++||++|++|||++
T Consensus 20 g~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~-gC~GG~~~~a~~~~~~~~Gi~~e~~~PY~~ 92 (174)
T smart00645 20 GQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNN-GCNGGLPDNAFEYIKKNGGLETESCYPYTG 92 (174)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCC-CCCCcCHHHHHHHHHHcCCcccccccCccc
Confidence 6799999999999999999999999999999999999875354 999999999999999866899999999964
No 13
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.88 E-value=9.3e-23 Score=159.34 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=72.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCCcccchhhhhcccCC-CCCCCCCCCc-HHHHHHHHHhhCCccCCCCccccc--CC
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNNLVDISTQQLVDCDNQ-GESRSCVGGF-IETIYQYVIQNRGINTERDYPNVG--VM 77 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~-~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~~--~~ 77 (88)
|.||+|||||++++||++++|+++..+.||+|+||||+.. ++. ||.||. +..++.|+++++||++|++|||.+ +.
T Consensus 551 G~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~-GC~GG~~~~efl~yI~e~GgLptESdYPYt~k~~~ 629 (1004)
T PTZ00462 551 GNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKD-RCDEGSNPLEFLQIIEDNGFLPADSNYLYNYTKVG 629 (1004)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCC-CCCCCCcHHHHHHHHHHcCCCcccccCCCccCCCC
Confidence 6899999999999999999999999999999999999864 355 999997 556669998886789999999986 56
Q ss_pred CCcccCCCC
Q 047400 78 DNCKVFQFN 86 (88)
Q Consensus 78 ~~C~~~~~~ 86 (88)
+.|+.+..+
T Consensus 630 g~Cp~~~~~ 638 (1004)
T PTZ00462 630 EDCPDEEDH 638 (1004)
T ss_pred CCCCCCccc
Confidence 789865443
No 14
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=99.87 E-value=2.3e-22 Score=133.66 Aligned_cols=81 Identities=40% Similarity=0.656 Sum_probs=70.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHh-CCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHh-hCCccCCCCcccccCC-C
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVT-NNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQ-NRGINTERDYPNVGVM-D 78 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~-~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~-~~Gi~~e~~yPY~~~~-~ 78 (88)
|.||+|||||++++||+++.+++ ...+.||+|+|+||....+. +|+||++..+++|+++ + ||++|++|||...+ .
T Consensus 21 g~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~-~c~gg~~~~a~~~~~~~~-Gi~~e~~~pY~~~~~~ 98 (219)
T PF00112_consen 21 GSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNK-GCDGGSPFDALKYIKNNN-GIVTEEDYPYNGNENP 98 (219)
T ss_dssp TSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSS-TTBBBEHHHHHHHHHHHT-SBEBTTTS--SSSSSC
T ss_pred Ccccccccchhccceecccccccccccccccccccccccccccc-ccccCcccccceeecccC-cccccccccccccccc
Confidence 68999999999999999999999 68899999999999983255 9999999999999999 6 99999999999887 6
Q ss_pred CcccCC
Q 047400 79 NCKVFQ 84 (88)
Q Consensus 79 ~C~~~~ 84 (88)
.|....
T Consensus 99 ~c~~~~ 104 (219)
T PF00112_consen 99 TCKSKK 104 (219)
T ss_dssp SSCHSG
T ss_pred cccccc
Confidence 787653
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.84 E-value=5.7e-21 Score=127.06 Aligned_cols=78 Identities=36% Similarity=0.515 Sum_probs=70.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhC--CCcccchhhhhcccCCC----CCCCCCCCcHHHHHH-HHHhhCCccCCCCcccc
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTN--NLVDISTQQLVDCDNQG----ESRSCVGGFIETIYQ-YVIQNRGINTERDYPNV 74 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~--~~~~lS~Q~lidC~~~~----~~~gC~GG~~~~a~~-~~~~~~Gi~~e~~yPY~ 74 (88)
|.||+|||||+++++|+++.+++. +.+.||+|+|+||.... +. +|.||.+..++. +++++ ||++|++|||.
T Consensus 16 g~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~-~c~gG~~~~~~~~~~~~~-Gi~~e~~~Py~ 93 (223)
T cd02619 16 GSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGING-SCDGGGPLSALLKLVALK-GIPPEEDYPYG 93 (223)
T ss_pred CCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCC-CCCCCcHHHHHHHHHHHc-CCCccccCCCC
Confidence 579999999999999999999987 78999999999998762 24 999999999998 88777 99999999999
Q ss_pred cCCCCcc
Q 047400 75 GVMDNCK 81 (88)
Q Consensus 75 ~~~~~C~ 81 (88)
..+..|.
T Consensus 94 ~~~~~~~ 100 (223)
T cd02619 94 AESDGEE 100 (223)
T ss_pred CCCCCCC
Confidence 9877765
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=99.58 E-value=6.9e-17 Score=115.14 Aligned_cols=72 Identities=22% Similarity=0.496 Sum_probs=66.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhCCC--cccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCccCCCCccccc
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVTNNL--VDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGINTERDYPNVG 75 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~~~~--~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~ 75 (88)
|+|++.|||+++++..+|++|.+... ..||+|+||+|+.. ++.||+||.++.||=||++. |++.+.+|||.+
T Consensus 230 gnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~ 303 (470)
T KOG1544|consen 230 GNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSG 303 (470)
T ss_pred CCcccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecc-cccccccccccC
Confidence 68999999999999999999987654 67999999999987 55699999999999999998 999999999975
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=5.5e-05 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=19.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHh
Q 047400 2 HPLGSCWIFAVVGAIEGISKIVT 24 (88)
Q Consensus 2 g~CgsCwAfa~~~~ie~~~~i~~ 24 (88)
|.+|+||||++++++|+.+.-..
T Consensus 118 g~~Gscwaf~t~~sles~l~~~~ 140 (372)
T COG4870 118 GSGGSCWAFATTRSLESYLNPES 140 (372)
T ss_pred CcccceEeeeehhhhhheecccc
Confidence 67999999999999998766543
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=96.82 E-value=0.0018 Score=48.48 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=53.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHh-CCCcccchhhhhc----------------ccCC-----------CCCCCCCCCcHHH
Q 047400 3 PLGSCWIFAVVGAIEGISKIVT-NNLVDISTQQLVD----------------CDNQ-----------GESRSCVGGFIET 54 (88)
Q Consensus 3 ~CgsCwAfa~~~~ie~~~~i~~-~~~~~lS~Q~lid----------------C~~~-----------~~~~gC~GG~~~~ 54 (88)
.=|-||.||++..|+..+..+. .+.+.||+..|.- .... .+. --+||.-..
T Consensus 62 ~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~-~~DGGqw~m 140 (437)
T cd00585 62 SSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANP-QNDGGQWDM 140 (437)
T ss_pred CCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCC-cCCCCchHH
Confidence 3478999999999999877754 4568888766554 2100 122 678999999
Q ss_pred HHHHHHhhCCccCCCCcccc
Q 047400 55 IYQYVIQNRGINTERDYPNV 74 (88)
Q Consensus 55 a~~~~~~~~Gi~~e~~yPY~ 74 (88)
+..-|.+. |++.++.||-+
T Consensus 141 ~~~li~KY-GvVPk~~~pet 159 (437)
T cd00585 141 LVNLIEKY-GLVPKSVMPES 159 (437)
T ss_pred HHHHHHHc-CCCcccccCCC
Confidence 99999998 99999999954
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=96.56 E-value=0.0058 Score=45.78 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=45.8
Q ss_pred CchHHHHHHHHHHHHHHHHHhC-CCcccchhhhh----------------cccCC----------CCCCCCCCCcHHHHH
Q 047400 4 LGSCWIFAVVGAIEGISKIVTN-NLVDISTQQLV----------------DCDNQ----------GESRSCVGGFIETIY 56 (88)
Q Consensus 4 CgsCwAfa~~~~ie~~~~i~~~-~~~~lS~Q~li----------------dC~~~----------~~~~gC~GG~~~~a~ 56 (88)
=|-||.||++..++..+..+.+ +...||+-.|. +.... ....--+||.-..+.
T Consensus 64 SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~DGGqw~~~~ 143 (438)
T PF03051_consen 64 SGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSDGGQWDMVV 143 (438)
T ss_dssp SSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S-B-HHHHH
T ss_pred CCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCCCCchHHHH
Confidence 4789999999999998888765 56888887653 33211 011256899998888
Q ss_pred HHHHhhCCccCCCCccccc
Q 047400 57 QYVIQNRGINTERDYPNVG 75 (88)
Q Consensus 57 ~~~~~~~Gi~~e~~yPY~~ 75 (88)
.-|++. ||+..+.||-+.
T Consensus 144 nli~KY-GvVPk~~mpet~ 161 (438)
T PF03051_consen 144 NLIKKY-GVVPKSVMPETF 161 (438)
T ss_dssp HHHHHH----BGGGSTTGC
T ss_pred HHHHHc-CcCcHhhCCCCC
Confidence 888888 999999999653
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=53.49 E-value=39 Score=25.33 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCCCCcHHHHHHHHHhhCCccCCCCccccc
Q 047400 46 SCVGGFIETIYQYVIQNRGINTERDYPNVG 75 (88)
Q Consensus 46 gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~ 75 (88)
-=+||--+....-+.+. ||+..+.||=+.
T Consensus 135 qqDGGQwdM~v~l~eKY-GvVpK~~ypes~ 163 (444)
T COG3579 135 QQDGGQWDMFVSLFEKY-GVVPKSVYPESF 163 (444)
T ss_pred cccCchHHHHHHHHHHh-CCCchhhccccc
Confidence 44778777677777777 999999999653
No 21
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=46.96 E-value=14 Score=27.89 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCC
Q 047400 7 CWIFAVVGAIEGISKIVTNNL 27 (88)
Q Consensus 7 CwAfa~~~~ie~~~~i~~~~~ 27 (88)
||.|.++-++|..++||.|..
T Consensus 375 cWv~~aI~~~El~IciKfg~~ 395 (466)
T KOG2735|consen 375 CWVFLAICALELLICIKFGSH 395 (466)
T ss_pred HHHHHHHHHHHhhhheeeCCc
Confidence 999999999999999998864
No 22
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=42.07 E-value=17 Score=23.93 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=22.6
Q ss_pred HHHHHHHHHHH--HHhCCCcccchhhhhcccCCCCCCCCCCCcH
Q 047400 11 AVVGAIEGISK--IVTNNLVDISTQQLVDCDNQGESRSCVGGFI 52 (88)
Q Consensus 11 a~~~~ie~~~~--i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~ 52 (88)
+.+.+||..++ |++...-. -++||+++. ||..|+.
T Consensus 51 ~~iHTlEHL~A~~iRnh~~g~---~~iID~SPM----GCrTGFY 87 (161)
T COG1854 51 AGIHTLEHLLAGFIRNHLNGN---VEIIDISPM----GCRTGFY 87 (161)
T ss_pred cchhhHHHHHHHHHHhcccCc---eeEEEecCc----ccccceE
Confidence 34567787666 33322211 578999887 9998875
No 23
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=33.82 E-value=56 Score=21.66 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccchhhhhc
Q 047400 7 CWIFAVVGAIEGISKIVTNNLVDISTQQLVD 37 (88)
Q Consensus 7 CwAfa~~~~ie~~~~i~~~~~~~lS~Q~lid 37 (88)
-.++|.+++|.+++..+..+ .-||.||=++
T Consensus 123 av~valvGAvsSyiaYqkKK-lCF~iq~g~~ 152 (169)
T PF12301_consen 123 AVVVALVGAVSSYIAYQKKK-LCFKIQQGLN 152 (169)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cceeeccccC
Confidence 45788889998888877655 4566665444
No 24
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=28.18 E-value=1.1e+02 Score=20.50 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHH--------HHhCCCcccchhhhhcccCCCCCCCCCCCcHHHHHHHHHhhCCcc
Q 047400 7 CWIFAVVGAIEGISK--------IVTNNLVDISTQQLVDCDNQGESRSCVGGFIETIYQYVIQNRGIN 66 (88)
Q Consensus 7 CwAfa~~~~ie~~~~--------i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~ 66 (88)
|=+|+.++.|-.... |.+.-...+|++||.+++.. +.+.++|.+.. |..
T Consensus 25 Ca~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~~----------~~~~i~y~ks~-g~~ 81 (175)
T PF05543_consen 25 CAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSLT----------PNQMIKYAKSQ-GRN 81 (175)
T ss_dssp HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHT-TEE
T ss_pred HHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCCC----------HHHHHHHHHHc-Ccc
Confidence 667777777654311 11112256899999887532 56778887776 443
No 25
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=24.88 E-value=61 Score=21.31 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCCCcccchhhhhcccCCCCCCCCCCCcH
Q 047400 11 AVVGAIEGISKIVTNNLVDISTQQLVDCDNQGESRSCVGGFI 52 (88)
Q Consensus 11 a~~~~ie~~~~i~~~~~~~lS~Q~lidC~~~~~~~gC~GG~~ 52 (88)
+++.+||..++---.+...- ..++||.++. ||..|+.
T Consensus 51 ~alHTlEHL~At~lRn~~~~-~~~iI~~sPM----GCrTGFY 87 (158)
T PRK02260 51 AGIHTLEHLLAGFLRNHLDG-GVEIIDISPM----GCRTGFY 87 (158)
T ss_pred cchhHHHHHHHHHHhhCccC-CceEEEECCC----ccccccE
Confidence 45677887666322221111 4568888877 9988765
No 26
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=23.45 E-value=65 Score=15.47 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=5.2
Q ss_pred hHHHHHHH
Q 047400 6 SCWIFAVV 13 (88)
Q Consensus 6 sCwAfa~~ 13 (88)
+|.+||..
T Consensus 14 ~C~~fA~a 21 (35)
T PF04060_consen 14 TCRAFAEA 21 (35)
T ss_dssp SHHHHHHH
T ss_pred cHHHHHHH
Confidence 47888643
No 27
>PF14190 DUF4313: Domain of unknown function (DUF4313)
Probab=22.83 E-value=95 Score=18.92 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCccCCCCcccccCCCCcccC
Q 047400 53 ETIYQYVIQNRGINTERDYPNVGVMDNCKVF 83 (88)
Q Consensus 53 ~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~ 83 (88)
.++++||+++ |+.... |++.+.|-|.+.
T Consensus 54 ~~~~~fl~~n-~Lg~~t--g~~~~SG~c~Yp 81 (105)
T PF14190_consen 54 PDALEFLKRN-KLGKPT--GRTRRSGFCEYP 81 (105)
T ss_pred HHHHHHHHHC-CCCccc--CcccccCceeee
Confidence 6899999998 777665 556666667654
Done!