BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047403
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 95.9 bits (237), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
YA+K++++GFTGA N+YRA+ +NWEL A G +V + KFIVG+ D+ + G +EYI
Sbjct: 226 YANKFEQTGFTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIH 285
Query: 62 RDVFKRYIPNL-EVVILDG-HHFIQQERAQEVSNETLSF 98
FK+ +P L EVV+L+G HF+ QER E+S F
Sbjct: 286 NGGFKKDVPLLEEVVVLEGAAHFVSQERPHEISKHIYDF 324
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 95.9 bits (237), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
YA+K++++GFTGA N+YRA+ +NWEL A G +V + KFIVG+ D+ + G +EYI
Sbjct: 226 YANKFEQTGFTGAVNYYRALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIH 285
Query: 62 RDVFKRYIPNL-EVVILDG-HHFIQQERAQEVSNETLSF 98
FK+ +P L EVV+L+G HF+ QER E+S F
Sbjct: 286 NGGFKKDVPLLEEVVVLEGAAHFVSQERPHEISKHIYDF 324
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
Y +++ SGF G +FY +D +W LA ++G +T FI G D+G + + I
Sbjct: 262 YTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYDVG--TIWGAQAIE 319
Query: 62 RDVFKRYIPNLE--VVILDGHHFIQQERAQEVSNETLSF 98
R +PN +I D H+IQQE +E + L F
Sbjct: 320 RA--HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDF 356
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
Y +++ SGF G +FY +D +W LA ++G +T FI G D+G + + I
Sbjct: 256 YTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYDVG--TIWGAQAIE 313
Query: 62 RDVFKRYIPNLE--VVILDGHHFIQQERAQEVSNETLSF 98
R +PN +I D H+IQQE +E + L F
Sbjct: 314 RA--HEVMPNYRGTHMIADVGHWIQQEAPEETNRLLLDF 350
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
Y ++++SGF G N+YR M+ NW+ G K+ I + +KD ++
Sbjct: 246 YVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQH--- 302
Query: 62 RDVFKRYIPNLEV-VILDGHHFIQQERAQEVS 92
+ +IP+L+ I D H+ Q ++ EV+
Sbjct: 303 ---MEDWIPHLKRGHIEDCGHWTQMDKPTEVN 331
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
Y ++++SGF G N+YR M+ NW+ G K+ I + +KD ++
Sbjct: 231 YVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQH--- 287
Query: 62 RDVFKRYIPNLEV-VILDGHHFIQQERAQEVS 92
+ +IP+L+ I D H+ Q ++ EV+
Sbjct: 288 ---MEDWIPHLKRGHIEDCGHWTQMDKPTEVN 316
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
Y ++++SGF G N+YR M+ NW+ G K+ I + +KD ++
Sbjct: 450 YVQQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQH--- 506
Query: 62 RDVFKRYIPNLEV-VILDGHHFIQQERAQEVS 92
+ +IP+L+ I D H+ Q ++ EV+
Sbjct: 507 ---MEDWIPHLKRGHIEDCGHWTQMDKPTEVN 535
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYIT 61
Y +++++GF G N+YR + NW+ G K+ + + +KDI ++
Sbjct: 449 YIQQFKKTGFRGPLNWYRNTERNWKWSCKGLGRKILVPALMVTAEKDIVLRPEMSKN--- 505
Query: 62 RDVFKRYIPNLEV-VILDGHHFIQQERAQEVS 92
+++IP L+ I D H+ Q E+ EV+
Sbjct: 506 ---MEKWIPFLKRGHIEDCGHWTQIEKPTEVN 534
>pdb|4APW|A Chain A, Alp12 Filament Structure
pdb|4APW|B Chain B, Alp12 Filament Structure
pdb|4APW|C Chain C, Alp12 Filament Structure
pdb|4APW|D Chain D, Alp12 Filament Structure
pdb|4APW|E Chain E, Alp12 Filament Structure
pdb|4APW|F Chain F, Alp12 Filament Structure
pdb|4APW|G Chain G, Alp12 Filament Structure
pdb|4APW|H Chain H, Alp12 Filament Structure
pdb|4APW|I Chain I, Alp12 Filament Structure
pdb|4APW|J Chain J, Alp12 Filament Structure
pdb|4APW|K Chain K, Alp12 Filament Structure
pdb|4APW|L Chain L, Alp12 Filament Structure
pdb|4APW|M Chain M, Alp12 Filament Structure
pdb|4APW|N Chain N, Alp12 Filament Structure
pdb|4APW|O Chain O, Alp12 Filament Structure
pdb|4APW|P Chain P, Alp12 Filament Structure
Length = 329
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 47 KDIGFESNGTREYITRDVFKRYIPNLE-----------VVILDGHHFIQQERAQEVSNET 95
K IG GT E I R +FK I NLE + LDG ++ E+ E S+ET
Sbjct: 20 KLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSET 79
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 46 DKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSF 98
+ D GF SN E + PN E V + G HF+Q++ E+ SF
Sbjct: 255 ESDPGFFSNAIVEGAKK------FPNTEFVKVKGLHFLQEDAPDEMGKYIKSF 301
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 46 DKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSF 98
+ D GF SN E + PN E V + G HF+Q++ E+ SF
Sbjct: 256 ESDPGFFSNAIVEGAKK------FPNTEFVKVKGLHFLQEDAPDEMGKYIKSF 302
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 46 DKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSF 98
+ D GF SN E + PN E V + G HF+Q++ E+ SF
Sbjct: 255 ESDPGFFSNAIVEGAKK------FPNTEFVKVKGLHFLQEDAPDEMGKYIKSF 301
>pdb|3NAP|A Chain A, Structure Of Triatoma Virus (Trv)
Length = 271
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 49 IGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNE-TLSFA 99
+GF S GTR+ + V ++IP ++ + +H + ++ +QE E LSF+
Sbjct: 1 VGFASAGTRDIRSSYVEGKFIPQ-DITGMSRNHELDEQPSQECIGERILSFS 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,198,295
Number of Sequences: 62578
Number of extensions: 117437
Number of successful extensions: 269
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 13
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)