Query 047403
Match_columns 105
No_of_seqs 113 out of 1161
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4178 Soluble epoxide hydrol 99.7 2.3E-18 5E-23 119.0 6.0 95 2-102 224-320 (322)
2 PLN02965 Probable pheophorbida 99.4 5.6E-13 1.2E-17 89.9 4.7 62 35-102 191-253 (255)
3 PLN02679 hydrolase, alpha/beta 99.4 9.4E-13 2E-17 93.2 5.8 69 34-104 289-359 (360)
4 PLN02824 hydrolase, alpha/beta 99.4 8.2E-13 1.8E-17 90.5 5.0 64 33-102 230-294 (294)
5 TIGR03343 biphenyl_bphD 2-hydr 99.4 1.2E-12 2.6E-17 88.7 5.6 62 34-101 220-282 (282)
6 PRK10349 carboxylesterase BioH 99.3 1.3E-12 2.7E-17 87.9 4.9 63 33-101 192-255 (256)
7 PRK03592 haloalkane dehalogena 99.3 9.9E-13 2.2E-17 90.2 4.4 65 34-103 225-290 (295)
8 PRK03204 haloalkane dehalogena 99.3 1.6E-12 3.5E-17 89.3 5.0 58 37-99 227-285 (286)
9 TIGR02240 PHA_depoly_arom poly 99.3 1.8E-12 3.9E-17 88.2 4.9 64 33-102 203-266 (276)
10 KOG1454 Predicted hydrolase/ac 99.3 2.3E-12 5.1E-17 90.5 5.0 63 34-102 260-324 (326)
11 TIGR01738 bioH putative pimelo 99.3 3E-12 6.4E-17 83.8 4.9 60 34-99 185-245 (245)
12 PRK00870 haloalkane dehalogena 99.3 4.4E-12 9.5E-17 87.4 5.8 64 33-103 235-302 (302)
13 PRK10673 acyl-CoA esterase; Pr 99.2 1.2E-11 2.6E-16 82.6 5.3 63 33-101 191-254 (255)
14 TIGR03056 bchO_mg_che_rel puta 99.2 2E-11 4.4E-16 82.1 5.2 61 34-100 217-278 (278)
15 PLN02578 hydrolase 99.2 1.9E-11 4.1E-16 86.3 5.2 61 34-100 293-353 (354)
16 PRK00175 metX homoserine O-ace 99.2 1.6E-11 3.5E-16 87.5 3.3 64 34-103 306-375 (379)
17 TIGR03611 RutD pyrimidine util 99.2 4.3E-11 9.2E-16 79.1 5.0 62 34-101 195-257 (257)
18 PRK08775 homoserine O-acetyltr 99.2 2E-11 4.4E-16 85.8 3.5 65 33-103 273-340 (343)
19 PRK06489 hypothetical protein; 99.2 5.4E-11 1.2E-15 84.2 5.6 65 34-103 289-358 (360)
20 PLN03087 BODYGUARD 1 domain co 99.1 5.1E-11 1.1E-15 87.4 5.0 61 35-101 416-478 (481)
21 TIGR01392 homoserO_Ac_trn homo 99.1 3E-11 6.5E-16 85.1 2.8 62 33-100 284-351 (351)
22 PLN03084 alpha/beta hydrolase 99.1 1.1E-10 2.3E-15 83.7 5.4 60 34-100 322-382 (383)
23 PRK07581 hypothetical protein; 99.1 7.9E-11 1.7E-15 82.4 4.4 64 33-102 271-336 (339)
24 TIGR01250 pro_imino_pep_2 prol 99.1 1.9E-10 4.1E-15 76.9 4.9 60 34-100 228-288 (288)
25 TIGR02427 protocat_pcaD 3-oxoa 99.1 2.6E-10 5.6E-15 74.7 5.4 61 34-100 190-251 (251)
26 PLN02385 hydrolase; alpha/beta 99.1 2.2E-10 4.7E-15 80.7 4.6 65 33-103 275-346 (349)
27 KOG2382 Predicted alpha/beta h 99.0 4.5E-10 9.8E-15 78.1 4.9 63 34-102 250-313 (315)
28 PRK11126 2-succinyl-6-hydroxy- 99.0 6.3E-10 1.4E-14 73.9 5.1 56 34-101 185-241 (242)
29 TIGR03695 menH_SHCHC 2-succiny 99.0 5.4E-10 1.2E-14 72.9 4.1 60 34-100 191-251 (251)
30 PHA02857 monoglyceride lipase; 99.0 9.1E-10 2E-14 74.7 5.0 64 33-102 205-273 (276)
31 PLN02894 hydrolase, alpha/beta 98.9 2.4E-09 5.1E-14 77.1 5.3 62 33-101 321-384 (402)
32 PF12697 Abhydrolase_6: Alpha/ 98.9 1.5E-09 3.2E-14 69.9 3.7 55 34-94 173-228 (228)
33 PRK06765 homoserine O-acetyltr 98.9 1.8E-09 3.8E-14 77.6 4.2 62 34-101 320-387 (389)
34 PRK05855 short chain dehydroge 98.9 2.4E-09 5.2E-14 79.0 4.9 62 35-102 231-292 (582)
35 PRK14875 acetoin dehydrogenase 98.9 4.5E-09 9.8E-14 73.9 6.0 59 34-101 311-370 (371)
36 PLN02511 hydrolase 98.9 2.2E-09 4.8E-14 76.9 4.5 64 33-101 294-364 (388)
37 PLN02211 methyl indole-3-aceta 98.9 3.2E-09 7E-14 72.7 5.0 63 35-103 208-271 (273)
38 PF00561 Abhydrolase_1: alpha/ 98.9 2.4E-09 5.1E-14 69.9 4.1 57 34-96 172-229 (230)
39 KOG2984 Predicted hydrolase [G 98.8 6.5E-09 1.4E-13 68.7 5.3 64 33-102 212-276 (277)
40 PLN02980 2-oxoglutarate decarb 98.8 6.5E-09 1.4E-13 85.3 4.8 64 33-103 1564-1640(1655)
41 PLN02298 hydrolase, alpha/beta 98.8 6.7E-09 1.5E-13 72.4 3.5 64 33-102 247-317 (330)
42 PRK10749 lysophospholipase L2; 98.8 8.2E-09 1.8E-13 72.3 3.8 64 33-102 255-329 (330)
43 PLN02652 hydrolase; alpha/beta 98.6 4.5E-08 9.7E-13 70.5 4.6 64 33-102 320-387 (395)
44 PRK10985 putative hydrolase; P 98.6 1.3E-07 2.8E-12 66.2 5.6 79 10-100 234-318 (324)
45 TIGR01249 pro_imino_pep_1 prol 98.4 4.9E-07 1.1E-11 62.6 4.8 58 35-98 245-305 (306)
46 COG0596 MhpC Predicted hydrola 98.4 8.3E-07 1.8E-11 57.4 5.3 61 34-100 218-280 (282)
47 PRK05077 frsA fermentation/res 98.4 5.4E-07 1.2E-11 65.3 4.6 61 34-102 352-412 (414)
48 TIGR03100 hydr1_PEP hydrolase, 98.3 4.2E-07 9.1E-12 62.3 3.1 66 35-101 205-274 (274)
49 TIGR01607 PST-A Plasmodium sub 98.2 2.8E-06 6E-11 59.9 5.1 58 37-100 270-331 (332)
50 PF00326 Peptidase_S9: Prolyl 98.2 4.2E-06 9.1E-11 55.0 5.6 65 36-102 143-209 (213)
51 PLN02872 triacylglycerol lipas 98.2 2.2E-06 4.9E-11 61.9 4.5 63 34-102 320-389 (395)
52 KOG4409 Predicted hydrolase/ac 98.2 3.5E-06 7.7E-11 59.6 4.8 59 37-102 303-364 (365)
53 PF08386 Abhydrolase_4: TAP-li 98.1 5.1E-06 1.1E-10 49.4 4.4 60 36-101 33-93 (103)
54 TIGR01836 PHA_synth_III_C poly 98.1 2.9E-06 6.2E-11 60.0 3.4 63 33-101 282-349 (350)
55 COG3208 GrsT Predicted thioest 98.1 4E-06 8.7E-11 56.6 3.5 62 34-101 173-235 (244)
56 TIGR01838 PHA_synth_I poly(R)- 98.1 2.7E-06 6E-11 63.5 2.8 52 32-89 410-462 (532)
57 PRK07868 acyl-CoA synthetase; 98.1 5E-06 1.1E-10 66.0 4.2 65 33-103 293-362 (994)
58 COG1506 DAP2 Dipeptidyl aminop 97.9 3.5E-05 7.5E-10 58.6 5.5 68 33-102 547-616 (620)
59 COG2267 PldB Lysophospholipase 97.7 9.5E-05 2.1E-09 51.6 5.0 65 34-103 225-295 (298)
60 COG0429 Predicted hydrolase of 97.6 0.00012 2.6E-09 51.7 5.0 81 9-101 252-339 (345)
61 PRK11460 putative hydrolase; P 97.6 0.00013 2.9E-09 49.0 5.1 64 35-100 146-210 (232)
62 KOG2551 Phospholipase/carboxyh 97.6 0.00016 3.5E-09 48.4 4.8 63 33-101 159-223 (230)
63 PRK10566 esterase; Provisional 97.6 8.7E-05 1.9E-09 49.6 3.5 58 35-102 183-248 (249)
64 COG1647 Esterase/lipase [Gener 97.4 0.00016 3.5E-09 48.5 3.5 64 33-101 177-243 (243)
65 PTZ00472 serine carboxypeptida 97.4 0.0005 1.1E-08 50.7 5.7 65 37-103 364-460 (462)
66 PF03096 Ndr: Ndr family; Int 97.3 0.00043 9.3E-09 48.0 4.4 64 33-103 215-280 (283)
67 PF02230 Abhydrolase_2: Phosph 97.3 0.00056 1.2E-08 45.2 4.7 59 37-101 155-214 (216)
68 PF03959 FSH1: Serine hydrolas 97.3 0.00013 2.7E-09 48.5 1.4 51 33-89 157-208 (212)
69 KOG2931 Differentiation-relate 97.3 0.00074 1.6E-08 47.1 5.2 62 35-103 244-307 (326)
70 PF00450 Peptidase_S10: Serine 97.2 0.00048 1E-08 49.4 4.3 63 38-100 331-414 (415)
71 PF01738 DLH: Dienelactone hyd 97.2 0.0005 1.1E-08 45.3 4.0 67 34-102 142-217 (218)
72 KOG1552 Predicted alpha/beta h 97.2 0.00086 1.9E-08 45.8 4.6 61 34-101 189-251 (258)
73 PRK11071 esterase YqiA; Provis 97.1 0.00092 2E-08 43.6 4.5 55 35-100 134-189 (190)
74 PF08840 BAAT_C: BAAT / Acyl-C 97.1 0.0004 8.6E-09 46.2 2.7 48 35-83 113-163 (213)
75 PF12695 Abhydrolase_5: Alpha/ 97.1 0.00042 9.2E-09 42.2 2.4 42 35-82 102-145 (145)
76 KOG4667 Predicted esterase [Li 97.0 0.00079 1.7E-08 45.3 3.2 59 35-100 197-256 (269)
77 KOG1455 Lysophospholipase [Lip 96.9 0.0013 2.9E-08 46.0 3.9 64 33-102 242-312 (313)
78 KOG3043 Predicted hydrolase re 96.8 0.0033 7.1E-08 42.4 4.8 66 34-102 161-240 (242)
79 PRK13604 luxD acyl transferase 96.7 0.0017 3.7E-08 45.7 2.9 49 34-89 199-250 (307)
80 PLN02213 sinapoylglucose-malat 96.6 0.0073 1.6E-07 42.6 5.8 66 37-103 233-318 (319)
81 PF05705 DUF829: Eukaryotic pr 96.6 0.003 6.6E-08 42.4 3.8 64 34-99 175-240 (240)
82 COG0400 Predicted esterase [Ge 96.5 0.007 1.5E-07 40.3 4.7 57 35-93 144-200 (207)
83 COG2021 MET2 Homoserine acetyl 96.5 0.0052 1.1E-07 44.1 4.3 63 33-101 302-367 (368)
84 PF09752 DUF2048: Uncharacteri 96.3 0.0069 1.5E-07 43.2 4.3 57 38-100 290-347 (348)
85 COG0412 Dienelactone hydrolase 96.3 0.017 3.6E-07 39.1 5.7 87 10-102 135-233 (236)
86 PLN02209 serine carboxypeptida 96.2 0.014 3E-07 43.0 5.6 66 37-103 351-436 (437)
87 PLN03016 sinapoylglucose-malat 96.2 0.014 3E-07 43.0 5.6 66 37-103 347-432 (433)
88 KOG1838 Alpha/beta hydrolase [ 96.1 0.019 4.1E-07 41.9 5.6 67 10-87 301-368 (409)
89 KOG1282 Serine carboxypeptidas 96.0 0.012 2.6E-07 43.6 4.4 67 38-104 364-450 (454)
90 KOG2564 Predicted acetyltransf 96.0 0.0084 1.8E-07 41.9 3.4 59 35-102 268-327 (343)
91 KOG2565 Predicted hydrolases o 95.9 0.0074 1.6E-07 43.7 2.7 86 9-102 376-463 (469)
92 COG2945 Predicted hydrolase of 95.8 0.013 2.9E-07 38.7 3.4 59 34-100 146-205 (210)
93 PLN02442 S-formylglutathione h 95.8 0.035 7.6E-07 38.3 5.7 48 35-84 215-264 (283)
94 PRK05371 x-prolyl-dipeptidyl a 95.8 0.029 6.3E-07 44.1 5.7 66 34-101 452-518 (767)
95 KOG4391 Predicted alpha/beta h 95.7 0.0098 2.1E-07 40.3 2.7 62 35-103 219-283 (300)
96 PF05448 AXE1: Acetyl xylan es 95.7 0.013 2.9E-07 41.4 3.5 59 34-101 259-319 (320)
97 PF06821 Ser_hydrolase: Serine 95.7 0.008 1.7E-07 38.8 2.1 46 35-87 112-158 (171)
98 COG3243 PhaC Poly(3-hydroxyalk 95.7 0.0093 2E-07 43.6 2.6 50 32-87 325-375 (445)
99 TIGR01839 PHA_synth_II poly(R) 95.6 0.01 2.2E-07 44.9 2.7 47 31-83 435-482 (560)
100 KOG1551 Uncharacterized conser 95.5 0.053 1.1E-06 37.9 5.6 57 40-102 309-366 (371)
101 TIGR01849 PHB_depoly_PhaZ poly 95.5 0.014 3.1E-07 42.6 3.0 65 32-102 332-406 (406)
102 PF00975 Thioesterase: Thioest 94.8 0.1 2.2E-06 34.2 5.4 60 37-99 168-229 (229)
103 COG1073 Hydrolases of the alph 94.7 0.086 1.9E-06 35.3 4.8 62 35-102 229-297 (299)
104 PF10142 PhoPQ_related: PhoPQ- 94.6 0.11 2.3E-06 37.7 5.3 58 35-101 260-319 (367)
105 PRK10162 acetyl esterase; Prov 94.4 0.084 1.8E-06 37.0 4.4 60 38-101 249-314 (318)
106 PF08538 DUF1749: Protein of u 93.4 0.047 1E-06 38.4 1.6 66 34-100 229-303 (303)
107 PF06057 VirJ: Bacterial virul 92.3 0.65 1.4E-05 30.7 5.7 52 37-100 139-190 (192)
108 KOG3253 Predicted alpha/beta h 91.9 0.32 6.9E-06 37.6 4.4 46 35-86 302-349 (784)
109 PF03583 LIP: Secretory lipase 91.8 0.49 1.1E-05 33.0 4.9 48 35-84 217-266 (290)
110 COG3571 Predicted hydrolase of 91.2 0.56 1.2E-05 30.6 4.3 63 32-101 137-210 (213)
111 PF07859 Abhydrolase_3: alpha/ 91.1 0.21 4.7E-06 32.3 2.5 44 38-85 167-211 (211)
112 TIGR02821 fghA_ester_D S-formy 91.0 0.44 9.5E-06 32.6 4.1 47 36-84 210-258 (275)
113 PF06500 DUF1100: Alpha/beta h 90.7 0.61 1.3E-05 34.3 4.7 60 33-101 348-408 (411)
114 PLN00021 chlorophyllase 89.8 1.2 2.5E-05 31.5 5.4 51 35-88 187-246 (313)
115 smart00824 PKS_TE Thioesterase 89.5 1 2.2E-05 28.4 4.7 61 34-99 150-212 (212)
116 KOG4627 Kynurenine formamidase 88.7 0.44 9.6E-06 32.3 2.5 62 32-99 202-268 (270)
117 COG4757 Predicted alpha/beta h 88.2 0.57 1.2E-05 32.2 2.8 60 34-99 213-280 (281)
118 COG3458 Acetyl esterase (deace 87.0 1.5 3.3E-05 30.9 4.4 58 34-100 256-315 (321)
119 KOG2624 Triglyceride lipase-ch 86.9 1.1 2.4E-05 32.9 3.8 63 33-101 328-397 (403)
120 PF05728 UPF0227: Uncharacteri 86.7 3.1 6.7E-05 27.2 5.6 54 35-99 132-186 (187)
121 KOG1515 Arylacetamide deacetyl 85.7 1 2.2E-05 32.3 3.1 63 36-102 266-335 (336)
122 PF06850 PHB_depo_C: PHB de-po 85.4 1.5 3.1E-05 29.3 3.5 63 37-102 134-202 (202)
123 PRK10115 protease 2; Provision 85.4 3.1 6.8E-05 32.6 5.8 48 34-83 602-654 (686)
124 COG3545 Predicted esterase of 84.4 0.86 1.9E-05 29.8 2.1 60 34-100 114-177 (181)
125 COG4188 Predicted dienelactone 84.3 0.84 1.8E-05 33.1 2.2 54 33-91 247-303 (365)
126 PF06342 DUF1057: Alpha/beta h 84.2 1.4 3.1E-05 31.0 3.2 66 35-100 210-297 (297)
127 PF11339 DUF3141: Protein of u 82.9 0.77 1.7E-05 34.9 1.6 26 31-56 291-316 (581)
128 PRK10252 entF enterobactin syn 80.3 3.8 8.2E-05 33.8 4.8 57 34-96 1233-1291(1296)
129 KOG2112 Lysophospholipase [Lip 79.1 3.7 8E-05 27.5 3.6 59 37-97 144-203 (206)
130 PF02273 Acyl_transf_2: Acyl t 76.9 2.8 6.2E-05 29.1 2.7 51 33-89 191-243 (294)
131 COG0657 Aes Esterase/lipase [L 76.9 4.2 9E-05 28.2 3.6 46 37-86 245-291 (312)
132 PF05576 Peptidase_S37: PS-10 75.5 9.1 0.0002 28.5 5.0 55 38-100 352-412 (448)
133 COG4287 PqaA PhoPQ-activated p 74.0 7.4 0.00016 28.8 4.3 61 34-100 326-388 (507)
134 PF07519 Tannase: Tannase and 72.6 9.6 0.00021 28.6 4.8 64 37-102 353-427 (474)
135 PF06289 FlbD: Flagellar prote 70.8 6.3 0.00014 21.1 2.6 35 68-102 24-58 (60)
136 PF06500 DUF1100: Alpha/beta h 68.9 3.8 8.2E-05 30.3 1.9 61 36-103 188-256 (411)
137 COG1582 FlgEa Uncharacterized 68.1 9.2 0.0002 20.8 2.8 36 67-102 23-58 (67)
138 cd08769 DAP_dppA_2 Peptidase M 66.8 10 0.00022 26.5 3.6 51 35-97 145-198 (270)
139 cd00281 DAP_dppA Peptidase M55 66.5 10 0.00022 26.4 3.6 52 35-98 144-198 (265)
140 PF02129 Peptidase_S15: X-Pro 61.8 8.7 0.00019 26.2 2.6 19 34-52 225-243 (272)
141 PF04301 DUF452: Protein of un 61.0 5.7 0.00012 26.7 1.5 36 41-84 169-204 (213)
142 COG3319 Thioesterase domains o 60.9 19 0.00042 24.9 4.1 41 63-103 211-253 (257)
143 COG2939 Carboxypeptidase C (ca 60.4 21 0.00046 27.2 4.5 29 73-101 462-490 (498)
144 cd08663 DAP_dppA_1 Peptidase M 56.9 20 0.00043 25.0 3.6 53 35-99 145-200 (266)
145 PF10929 DUF2811: Protein of u 56.4 12 0.00026 19.9 1.9 21 83-103 22-42 (57)
146 PRK04940 hypothetical protein; 55.7 47 0.001 21.8 5.0 55 36-100 121-178 (180)
147 cd08770 DAP_dppA_3 Peptidase M 54.5 21 0.00046 24.9 3.4 53 35-99 145-199 (263)
148 PF06028 DUF915: Alpha/beta hy 53.1 17 0.00037 25.1 2.8 59 35-100 182-253 (255)
149 KOG2100 Dipeptidyl aminopeptid 52.5 36 0.00079 27.3 4.8 63 35-100 679-745 (755)
150 TIGR01840 esterase_phb esteras 49.7 20 0.00043 23.4 2.7 23 37-59 168-190 (212)
151 COG2830 Uncharacterized protei 47.4 15 0.00032 24.1 1.7 36 41-84 168-203 (214)
152 PF12740 Chlorophyllase2: Chlo 46.4 53 0.0011 22.8 4.4 50 35-88 152-211 (259)
153 KOG3975 Uncharacterized conser 45.9 50 0.0011 23.3 4.1 57 37-99 242-300 (301)
154 PF07224 Chlorophyllase: Chlor 39.3 75 0.0016 22.6 4.2 49 35-87 178-235 (307)
155 PF04951 Peptidase_M55: D-amin 38.7 26 0.00057 24.4 2.0 52 35-98 145-199 (265)
156 PRK06007 fliF flagellar MS-rin 38.0 24 0.00053 27.1 1.9 20 83-102 522-541 (542)
157 KOG4840 Predicted hydrolases o 36.6 1.5E+02 0.0032 20.7 5.6 23 33-56 221-243 (299)
158 TIGR00206 fliF flagellar basal 34.1 29 0.00063 26.8 1.8 20 83-102 535-554 (555)
159 KOG1283 Serine carboxypeptidas 33.6 28 0.00062 25.4 1.5 35 65-99 376-411 (414)
160 PF10605 3HBOH: 3HB-oligomer h 33.5 66 0.0014 25.5 3.5 45 35-81 552-601 (690)
161 cd06533 Glyco_transf_WecG_TagA 33.5 50 0.0011 21.1 2.6 51 37-96 46-96 (171)
162 COG0693 ThiJ Putative intracel 32.9 48 0.001 21.1 2.5 32 70-101 65-98 (188)
163 PF10503 Esterase_phd: Esteras 32.1 46 0.001 22.4 2.3 21 37-57 169-189 (220)
164 COG1922 WecG Teichoic acid bio 31.5 54 0.0012 22.8 2.6 53 37-98 108-160 (253)
165 PF08513 LisH: LisH; InterPro 30.6 57 0.0012 14.1 1.9 15 89-103 1-15 (27)
166 KOG2521 Uncharacterized conser 30.4 81 0.0018 23.0 3.4 65 35-101 223-289 (350)
167 COG2808 PaiB Transcriptional r 26.9 1.9E+02 0.0041 19.5 4.4 60 37-99 71-131 (209)
168 smart00667 LisH Lissencephaly 26.3 69 0.0015 13.7 1.9 17 87-103 2-18 (34)
169 COG4844 Uncharacterized protei 26.3 83 0.0018 17.3 2.2 28 77-104 50-77 (78)
170 PF03403 PAF-AH_p_II: Platelet 26.1 1.2E+02 0.0026 22.1 3.7 50 34-88 271-321 (379)
171 PF10952 DUF2753: Protein of u 25.9 42 0.0009 21.0 1.1 15 91-105 102-116 (140)
172 KOG2918 Carboxymethyl transfer 24.3 83 0.0018 22.8 2.5 61 35-103 185-246 (335)
173 KOG4584 Uncharacterized conser 23.6 70 0.0015 23.0 2.0 44 38-86 270-315 (348)
174 TIGR02508 type_III_yscG type I 23.5 53 0.0011 19.8 1.2 22 77-103 13-35 (115)
175 PF04814 HNF-1_N: Hepatocyte n 23.3 78 0.0017 20.9 2.1 23 82-104 110-132 (180)
176 PF03808 Glyco_tran_WecB: Glyc 23.2 1.1E+02 0.0025 19.4 2.9 37 38-82 49-85 (172)
177 PRK13669 hypothetical protein; 22.7 90 0.0019 17.6 2.0 30 75-104 48-77 (78)
178 TIGR00067 glut_race glutamate 22.3 1.9E+02 0.0042 19.7 4.0 34 63-96 15-50 (251)
179 COG3946 VirJ Type IV secretory 22.3 2.7E+02 0.0058 21.1 4.8 50 38-99 397-446 (456)
180 PF07607 DUF1570: Protein of u 21.9 59 0.0013 20.0 1.3 25 80-104 103-127 (128)
181 PF07293 DUF1450: Protein of u 21.8 88 0.0019 17.6 1.9 29 76-104 49-77 (78)
182 PRK14747 cytochrome b6-f compl 21.0 89 0.0019 14.1 1.4 9 40-48 20-28 (29)
183 PF03242 LEA_3: Late embryogen 20.8 1E+02 0.0022 17.9 2.1 31 65-96 61-92 (93)
184 PRK00865 glutamate racemase; P 20.3 2.2E+02 0.0049 19.4 4.0 33 63-95 22-56 (261)
No 1
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.75 E-value=2.3e-18 Score=119.05 Aligned_cols=95 Identities=39% Similarity=0.670 Sum_probs=84.2
Q ss_pred hhhhhcccCCcchhhhhhhcCCCHHHhhccCCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc-ceEEecC-
Q 047403 2 YADKYQESGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNL-EVVILDG- 79 (105)
Q Consensus 2 y~~~~~~~g~~~~~~~yr~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~- 79 (105)
|+..|...|+++.+|+||++.++|+ ..++.+.++++|+++|||+.|.+++.+.. ...+++.+|+. +.+++++
T Consensus 224 ~~~~f~~~g~~gplNyyrn~~r~w~-a~~~~~~~i~iPv~fi~G~~D~v~~~p~~-----~~~~rk~vp~l~~~vv~~~~ 297 (322)
T KOG4178|consen 224 YVSKFQIDGFTGPLNYYRNFRRNWE-AAPWALAKITIPVLFIWGDLDPVLPYPIF-----GELYRKDVPRLTERVVIEGI 297 (322)
T ss_pred HHhccccccccccchhhHHHhhCch-hccccccccccceEEEEecCcccccchhH-----HHHHHHhhccccceEEecCC
Confidence 6677888899999999999999998 66777889999999999999999886633 36788889997 7888899
Q ss_pred CCCcchhcHHHHHHHHHHhhhcC
Q 047403 80 HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 80 gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
|||+++|+|++|+++|.+|+++.
T Consensus 298 gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 298 GHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccccccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999864
No 2
>PLN02965 Probable pheophorbidase
Probab=99.38 E-value=5.6e-13 Score=89.88 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=56.0
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
.+++|+++|+|++|.++++... +.+.+.+|+++++++++ ||++++|+|++|++.|.+|++..
T Consensus 191 ~i~vP~lvi~g~~D~~~~~~~~------~~~~~~~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 191 AEKVPRVYIKTAKDNLFDPVRQ------DVMVENWPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred cCCCCEEEEEcCCCCCCCHHHH------HHHHHhCCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHh
Confidence 6899999999999999985332 77899999999999999 99999999999999999998754
No 3
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.37 E-value=9.4e-13 Score=93.23 Aligned_cols=69 Identities=19% Similarity=0.389 Sum_probs=57.2
Q ss_pred CcccccEEEEeeCCCCCCCCCC-chhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcCCC
Q 047403 34 TKVTIAMKFIVGDKDIGFESNG-TREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQDI 104 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~~~ 104 (105)
.++++|||+|||++|.+++... ...++ ..+.+.+|++++.+|++ ||++++|+|+++++.|.+||++.+.
T Consensus 289 ~~i~~PtLii~G~~D~~~p~~~~~~~~~--~~l~~~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~~~ 359 (360)
T PLN02679 289 PRISLPILVLWGDQDPFTPLDGPVGKYF--SSLPSQLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQLPS 359 (360)
T ss_pred hhcCCCEEEEEeCCCCCcCchhhHHHHH--HhhhccCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999987542 11111 45677789999999999 9999999999999999999997654
No 4
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.37 E-value=8.2e-13 Score=90.54 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=55.9
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
..+++||||+|+|++|.+++.... +.+.+..+++++.++++ ||++++|+|++|++.|.+|++++
T Consensus 230 l~~i~~P~lvi~G~~D~~~~~~~~------~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 230 LPAVKCPVLIAWGEKDPWEPVELG------RAYANFDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVARH 294 (294)
T ss_pred HhhcCCCeEEEEecCCCCCChHHH------HHHHhcCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhcC
Confidence 347899999999999999874333 55788888899999999 99999999999999999999864
No 5
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.36 E-value=1.2e-12 Score=88.72 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=55.7
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
.+++||+|+|+|++|.++++... +.+.+.+|+++++++++ ||+++.|+|+++++.|.+|++.
T Consensus 220 ~~i~~Pvlli~G~~D~~v~~~~~------~~~~~~~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~~ 282 (282)
T TIGR03343 220 GEIKAKTLVTWGRDDRFVPLDHG------LKLLWNMPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLRN 282 (282)
T ss_pred hhCCCCEEEEEccCCCcCCchhH------HHHHHhCCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhhC
Confidence 48899999999999999985443 67888899999999999 9999999999999999999863
No 6
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.35 E-value=1.3e-12 Score=87.87 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=55.6
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
..++++|||+|+|++|.+++.+.. +.+.+.+|++++.++++ ||++++|+|++|++.|.+|-++
T Consensus 192 l~~i~~P~lii~G~~D~~~~~~~~------~~~~~~i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 192 LQNVSMPFLRLYGYLDGLVPRKVV------PMLDKLWPHSESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred HhhcCCCeEEEecCCCccCCHHHH------HHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 348899999999999999874332 67888899999999999 9999999999999999999764
No 7
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.34 E-value=9.9e-13 Score=90.17 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=55.2
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
.+++||+|+|+|++|.++++.... +.+.+.+++++++++++ ||+++.|+|+++++.|.+|+++..
T Consensus 225 ~~i~~P~lii~G~~D~~~~~~~~~-----~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 225 ATSDVPKLLINAEPGAILTTGAIR-----DWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred ccCCCCeEEEeccCCcccCcHHHH-----HHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHHhc
Confidence 478999999999999998544442 44566688999999999 999999999999999999998653
No 8
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.34 E-value=1.6e-12 Score=89.31 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=52.1
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl 99 (105)
++|||+|||++|.++++... .+.+.+.+|++++++|++ ||++++|+|+++++.|.+|+
T Consensus 227 ~~PtliI~G~~D~~~~~~~~-----~~~~~~~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTI-----LPRLRATFPDHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCCcccCcHHH-----HHHHHHhcCCCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 89999999999998764433 267888999999999999 99999999999999999997
No 9
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.33 E-value=1.8e-12 Score=88.21 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=56.5
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
..+++||+|+|+|++|.++++... +.+.+.+|+++++++++||+++.|+|+++++.|.+|++..
T Consensus 203 l~~i~~P~lii~G~~D~~v~~~~~------~~l~~~~~~~~~~~i~~gH~~~~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 203 LHKIQQPTLVLAGDDDPIIPLINM------RLLAWRIPNAELHIIDDGHLFLITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred hhcCCCCEEEEEeCCCCcCCHHHH------HHHHHhCCCCEEEEEcCCCchhhccHHHHHHHHHHHHHHh
Confidence 358899999999999999985443 5678889999999998899999999999999999999853
No 10
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.32 E-value=2.3e-12 Score=90.47 Aligned_cols=63 Identities=30% Similarity=0.344 Sum_probs=55.7
Q ss_pred Cccc-ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 34 TKVT-IAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 34 ~~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
+++. ||+|+|||+.|++++.+. +..+.+.+|++++.+|++ ||.+|+|.|+++++.|..|+...
T Consensus 260 ~~i~~~pvlii~G~~D~~~p~~~------~~~~~~~~pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 260 KKIWKCPVLIIWGDKDQIVPLEL------AEELKKKLPNAELVEIPGAGHLPHLERPEEVAALLRSFIARL 324 (326)
T ss_pred ccccCCceEEEEcCcCCccCHHH------HHHHHhhCCCceEEEeCCCCcccccCCHHHHHHHHHHHHHHh
Confidence 4555 999999999999998553 367788789999999999 99999999999999999999864
No 11
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.31 E-value=3e-12 Score=83.78 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=53.7
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl 99 (105)
.++++|+++|+|++|.+++.... ..+.+.+|++++.++++ ||+++.|+|+++++.|.+|+
T Consensus 185 ~~i~~Pvlii~g~~D~~~~~~~~------~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 185 QNISVPFLRLYGYLDGLVPAKVV------PYLDKLAPHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred hcCCCCEEEEeecCCcccCHHHH------HHHHHhCCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 48899999999999999984433 56778899999999999 99999999999999999996
No 12
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.30 E-value=4.4e-12 Score=87.37 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcc---eEEecC-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLE---VVILDG-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
..+++||+++|+|++|++++. .. +.+.+.+++.+ +.++++ ||++++|+|+++++.|.+|++.+|
T Consensus 235 l~~i~~P~lii~G~~D~~~~~-~~------~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~~~ 302 (302)
T PRK00870 235 LERWDKPFLTAFSDSDPITGG-GD------AILQKRIPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRATP 302 (302)
T ss_pred hhcCCCceEEEecCCCCcccC-ch------HHHHhhcccccccceeeecCCCccchhhChHHHHHHHHHHHhcCC
Confidence 358899999999999999874 32 45788888876 789999 999999999999999999999875
No 13
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.25 E-value=1.2e-11 Score=82.61 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
.+.+++|+|+|+|++|..++.... +.+.+.+|++++.++++ ||++++|+|+++++.|.+||.+
T Consensus 191 ~~~~~~P~l~i~G~~D~~~~~~~~------~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 191 IPAWPHPALFIRGGNSPYVTEAYR------DDLLAQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred cCCCCCCeEEEECCCCCCCCHHHH------HHHHHhCCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 347789999999999998874332 67888899999999999 9999999999999999999975
No 14
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.22 E-value=2e-11 Score=82.08 Aligned_cols=61 Identities=21% Similarity=0.422 Sum_probs=54.4
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.++++|+++|+|++|.+++.... +.+.+.+++++++.+++ ||++++|+|+++++.|.+|++
T Consensus 217 ~~i~~P~lii~g~~D~~vp~~~~------~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 217 PRITIPLHLIAGEEDKAVPPDES------KRAATRVPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred ccCCCCEEEEEeCCCcccCHHHH------HHHHHhccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 47899999999999999985433 66888899999999999 999999999999999999984
No 15
>PLN02578 hydrolase
Probab=99.21 E-value=1.9e-11 Score=86.32 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=53.7
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.++++|+++|+|++|..++.... ..+.+.+|++++++++.||++++|+|+++++.|.+|++
T Consensus 293 ~~i~~PvLiI~G~~D~~v~~~~~------~~l~~~~p~a~l~~i~~GH~~~~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 293 SKLSCPLLLLWGDLDPWVGPAKA------EKIKAFYPDTTLVNLQAGHCPHDEVPEQVNKALLEWLS 353 (354)
T ss_pred hcCCCCEEEEEeCCCCCCCHHHH------HHHHHhCCCCEEEEeCCCCCccccCHHHHHHHHHHHHh
Confidence 47899999999999998874443 67888899999999944999999999999999999986
No 16
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.18 E-value=1.6e-11 Score=87.49 Aligned_cols=64 Identities=8% Similarity=-0.033 Sum_probs=55.1
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc----ceEEec-C-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNL----EVVILD-G-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~-~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
.+|+||||+|+|++|.++++... +.+.+.++++ ++.+++ + ||++++|+|++++++|.+||.+..
T Consensus 306 ~~I~~PtLvI~G~~D~~~p~~~~------~~la~~i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 306 ARIKARFLVVSFTSDWLFPPARS------REIVDALLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLERAA 375 (379)
T ss_pred hcCCCCEEEEEECCccccCHHHH------HHHHHHHHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHhhh
Confidence 48899999999999999885443 6688888887 677774 8 999999999999999999998754
No 17
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.17 E-value=4.3e-11 Score=79.13 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=54.6
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
.++++|+++++|++|.++++... ..+.+.+++++++.+++ ||++++|+|+++++.|.+||+.
T Consensus 195 ~~i~~P~l~i~g~~D~~~~~~~~------~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 195 DRIQHPVLLIANRDDMLVPYTQS------LRLAAALPNAQLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred cccCccEEEEecCcCcccCHHHH------HHHHHhcCCceEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 47899999999999999985443 55777789999999999 9999999999999999999863
No 18
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.17 E-value=2e-11 Score=85.76 Aligned_cols=65 Identities=6% Similarity=-0.029 Sum_probs=55.0
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-CCcceEEec-C-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-PNLEVVILD-G-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~-~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
..++++|+|+|+|++|.+++.... ..+.+.+ |++++++|+ + ||++++|+|++|++.|.+||++..
T Consensus 273 l~~I~~PtLvi~G~~D~~~p~~~~------~~~~~~i~p~a~l~~i~~~aGH~~~lE~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 273 PEAIRVPTVVVAVEGDRLVPLADL------VELAEGLGPRGSLRVLRSPYGHDAFLKETDRIDAILTTALRSTG 340 (343)
T ss_pred hhcCCCCeEEEEeCCCEeeCHHHH------HHHHHHcCCCCeEEEEeCCccHHHHhcCHHHHHHHHHHHHHhcc
Confidence 358899999999999999874443 4566656 799999997 6 999999999999999999998653
No 19
>PRK06489 hypothetical protein; Provisional
Probab=99.17 E-value=5.4e-11 Score=84.15 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=55.2
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-----CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-----HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
.+|+||||+|+|++|.++++.... .+.+.+.+|++++++|++ ||+++ |+|+++++.|.+||++++
T Consensus 289 ~~I~~PvLvI~G~~D~~~p~~~~~----~~~la~~ip~a~l~~i~~a~~~~GH~~~-e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 289 EKIKAPVLAINSADDERNPPETGV----MEAALKRVKHGRLVLIPASPETRGHGTT-GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred HhCCCCEEEEecCCCcccChhhHH----HHHHHHhCcCCeEEEECCCCCCCCcccc-cCHHHHHHHHHHHHHhcc
Confidence 478999999999999998744310 145788899999999987 99997 899999999999998775
No 20
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.15 E-value=5.1e-11 Score=87.42 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcch-hcHHHHHHHHHHhhhc
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQ-ERAQEVSNETLSFASF 101 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~-e~p~~v~~~l~~fl~~ 101 (105)
++++|+|+|||++|.++++... +.+.+.+|++++++|++ ||++++ |+|+++++.|.+|...
T Consensus 416 ~I~vPtLII~Ge~D~ivP~~~~------~~la~~iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 416 QLKCDVAIFHGGDDELIPVECS------YAVKAKVPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hCCCCEEEEEECCCCCCCHHHH------HHHHHhCCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 6899999999999999985443 66888999999999999 999995 9999999999999864
No 21
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.12 E-value=3e-11 Score=85.13 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=53.2
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceE-----EecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVV-----ILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.++|++|+|+|+|++|.++++... +.+.+.+|+++.. ++++ ||++++|+|+++++.|.+||+
T Consensus 284 l~~I~~P~Lvi~G~~D~~~p~~~~------~~~a~~i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 284 LSRIKAPFLVVSITSDWLFPPAES------RELAKALPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred HhhCCCCEEEEEeCCccccCHHHH------HHHHHHHhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 348899999999999999885443 6788889998765 5678 999999999999999999984
No 22
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.12 E-value=1.1e-10 Score=83.69 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=51.1
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
..+++|+|+|||+.|.+++.... +.+.+. ++.++++|++ ||++++|+|++++++|.+|+.
T Consensus 322 ~~i~vPvLiI~G~~D~~v~~~~~------~~~a~~-~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 322 KNWKTPITVCWGLRDRWLNYDGV------EDFCKS-SQHKLIELPMAGHHVQEDCGEELGGIISGILS 382 (383)
T ss_pred ccCCCCEEEEeeCCCCCcCHHHH------HHHHHh-cCCeEEEECCCCCCcchhCHHHHHHHHHHHhh
Confidence 36899999999999998874433 445554 5889999999 999999999999999999986
No 23
>PRK07581 hypothetical protein; Validated
Probab=99.11 E-value=7.9e-11 Score=82.44 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=55.9
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC--CCCcchhcHHHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG--HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
..+++||||+|+|++|.++++... +.+.+.+|+++++++++ ||++++|+|++++..|.+||++.
T Consensus 271 L~~I~~PtLvI~G~~D~~~p~~~~------~~l~~~ip~a~l~~i~~~~GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 271 LGSITAKTFVMPISTDLYFPPEDC------EAEAALIPNAELRPIESIWGHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred HhcCCCCEEEEEeCCCCCCCHHHH------HHHHHhCCCCeEEEeCCCCCccccccCcHHHHHHHHHHHHHH
Confidence 347899999999999999885443 66788899999999995 99999999999999999999864
No 24
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.08 E-value=1.9e-10 Score=76.95 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=51.9
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.+++||+++++|++|.+.+ ... ..+.+.+++.++.++++ ||+++.|+|+++++.|.+|++
T Consensus 228 ~~i~~P~lii~G~~D~~~~-~~~------~~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 228 SEIKVPTLLTVGEFDTMTP-EAA------REMQELIAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred hccCCCEEEEecCCCccCH-HHH------HHHHHhccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 4789999999999998533 333 56778889999999999 999999999999999999984
No 25
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.07 E-value=2.6e-10 Score=74.66 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=53.8
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.++++|+++|+|++|.+++.... ..+.+.+++.++..+++ ||++++|+|+++++.|.+|++
T Consensus 190 ~~~~~Pvlii~g~~D~~~~~~~~------~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 190 GAIAVPTLCIAGDQDGSTPPELV------REIADLVPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred hhcCCCeEEEEeccCCcCChHHH------HHHHHhCCCceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 47889999999999999985443 56777789999999998 999999999999999999974
No 26
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.05 E-value=2.2e-10 Score=80.69 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=54.0
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC--CCcceEEecC-CCCcchhcHHH----HHHHHHHhhhcCC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI--PNLEVVILDG-HHFIQQERAQE----VSNETLSFASFQD 103 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-gH~~~~e~p~~----v~~~l~~fl~~~~ 103 (105)
..++++|+|+|+|++|.++++... ..+.+.+ ++.+++++++ ||++++|+|++ |++.|.+||+++.
T Consensus 275 l~~i~~P~Lii~G~~D~vv~~~~~------~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 275 LEEVSLPLLILHGEADKVTDPSVS------KFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred cccCCCCEEEEEeCCCCccChHHH------HHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 457899999999999999985443 4455555 5789999999 99999999987 8999999998754
No 27
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.02 E-value=4.5e-10 Score=78.08 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=56.4
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
.....|||+|.|.++.+++.... ..|.+.+|++++..+++ |||+|.|+|+++.+.|.+|+.+.
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~------~~~~~~fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHY------PRMEKIFPNVEVHELDEAGHWVHLEKPEEFIESISEFLEEP 313 (315)
T ss_pred cccccceeEEecCCCCCcChhHH------HHHHHhccchheeecccCCceeecCCHHHHHHHHHHHhccc
Confidence 57789999999999999984433 67899999999999998 99999999999999999998764
No 28
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.01 E-value=6.3e-10 Score=73.89 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=46.9
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
.+++||+++|+|++|..+. .+.+. .++++++|++ ||++++|+|+++++.|.+|+..
T Consensus 185 ~~i~~P~lii~G~~D~~~~-----------~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 185 QALTFPFYYLCGERDSKFQ-----------ALAQQ-LALPLHVIPNAGHNAHRENPAAFAASLAQILRL 241 (242)
T ss_pred hccCCCeEEEEeCCcchHH-----------HHHHH-hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhh
Confidence 4789999999999997542 12222 3889999999 9999999999999999999974
No 29
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.98 E-value=5.4e-10 Score=72.91 Aligned_cols=60 Identities=27% Similarity=0.476 Sum_probs=51.7
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
..++||+++|+|++|..++ ... +.+.+..++.++..+++ ||++++|+|+++++.|.+|++
T Consensus 191 ~~~~~P~l~i~g~~D~~~~-~~~------~~~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 191 QALTIPVLYLCGEKDEKFV-QIA------KEMQKLLPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred hCCCCceEEEeeCcchHHH-HHH------HHHHhcCCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 4789999999999998653 222 55777889999999999 999999999999999999984
No 30
>PHA02857 monoglyceride lipase; Provisional
Probab=98.97 E-value=9.1e-10 Score=74.72 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=53.1
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-CCcceEEecC-CCCcchhcH---HHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-PNLEVVILDG-HHFIQQERA---QEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-gH~~~~e~p---~~v~~~l~~fl~~~ 102 (105)
..++++|+|+|+|++|.++++... ..+.+.+ ++.++.++++ ||.++.|+| +++.+.+.+||+..
T Consensus 205 l~~i~~Pvliv~G~~D~i~~~~~~------~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 205 IPKIKTPILILQGTNNEISDVSGA------YYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred cccCCCCEEEEecCCCCcCChHHH------HHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 458999999999999999986554 4455544 5789999999 999999977 47999999999865
No 31
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.90 E-value=2.4e-09 Score=77.13 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=49.8
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-CCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-PNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
..++++|+++|+|++|.+.+ ... ..+.+.. +.+++.+|++ ||++++|+|+++++.|.+|++.
T Consensus 321 l~~I~vP~liI~G~~D~i~~-~~~------~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~ 384 (402)
T PLN02894 321 ASEWKVPTTFIYGRHDWMNY-EGA------VEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRK 384 (402)
T ss_pred cccCCCCEEEEEeCCCCCCc-HHH------HHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHH
Confidence 45789999999999998765 333 2334434 4588999999 9999999999999999988864
No 32
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.90 E-value=1.5e-09 Score=69.87 Aligned_cols=55 Identities=24% Similarity=0.482 Sum_probs=47.5
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHH
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNE 94 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~ 94 (105)
..+++|+++|+|++|.+++.... +.+.+..+++++.++++ ||++++|+|++|+++
T Consensus 173 ~~~~~pvl~i~g~~D~~~~~~~~------~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 173 PRIKVPVLVIHGEDDPIVPPESA------EELADKLPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp HGSSSEEEEEEETTSSSSHHHHH------HHHHHHSTTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred cccCCCeEEeecCCCCCCCHHHH------HHHHHHCCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 47799999999999999873332 66777789999999999 999999999999874
No 33
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.89 E-value=1.8e-09 Score=77.60 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=52.9
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCC----CcceEEec-C-CCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIP----NLEVVILD-G-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~-~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
.++++|+|+|+|++|.++++... +.+.+.++ ++++++|+ + ||++++|+|+++++.|.+||++
T Consensus 320 ~~I~~PtLvI~G~~D~l~p~~~~------~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 320 SNIEANVLMIPCKQDLLQPPRYN------YKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred hcCCCCEEEEEeCCCCCCCHHHH------HHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 47899999999999999985443 55666675 68899997 5 9999999999999999999975
No 34
>PRK05855 short chain dehydrogenase; Validated
Probab=98.89 E-value=2.4e-09 Score=79.04 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=53.8
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHhhhcC
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
.++||+|+|+|++|.++++... +.+.+.+++.++.++++||+++.|+|+++++.|.+|+...
T Consensus 231 ~~~~P~lii~G~~D~~v~~~~~------~~~~~~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 231 YTDVPVQLIVPTGDPYVRPALY------DDLSRWVPRLWRREIKAGHWLPMSHPQVLAAAVAEFVDAV 292 (582)
T ss_pred CccCceEEEEeCCCcccCHHHh------ccccccCCcceEEEccCCCcchhhChhHHHHHHHHHHHhc
Confidence 5899999999999999984443 5677778888888887799999999999999999999864
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.88 E-value=4.5e-09 Score=73.86 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=49.8
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
.+++||+|+|+|++|.++++.. .....+++++.++++ ||++++|+|+++++.|.+|++.
T Consensus 311 ~~i~~Pvlii~g~~D~~vp~~~---------~~~l~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 311 ASLAIPVLVIWGEQDRIIPAAH---------AQGLPDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred hcCCCCEEEEEECCCCccCHHH---------HhhccCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 3789999999999999987422 223345789999999 9999999999999999999975
No 36
>PLN02511 hydrolase
Probab=98.88 E-value=2.2e-09 Score=76.92 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=53.2
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHH------HHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQE------VSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~------v~~~l~~fl~~ 101 (105)
..+|++|+|+|+|++|++++..... ..+.+..|++++.++++ ||+.++|+|+. +++.+.+|++.
T Consensus 294 L~~I~vPtLiI~g~dDpi~p~~~~~-----~~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 294 IKHVRVPLLCIQAANDPIAPARGIP-----REDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred hccCCCCeEEEEcCCCCcCCcccCc-----HhHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHH
Confidence 4589999999999999999854431 23556789999999999 99999999976 58999999874
No 37
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.88 E-value=3.2e-09 Score=72.71 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=54.3
Q ss_pred cc-cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHhhhcCC
Q 047403 35 KV-TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 35 ~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
.+ ++|+++|+|++|.++++. .+ +.|.+.+++.+++.++.||.+++++|+++++.|.++....+
T Consensus 208 ~~~~vP~l~I~g~~D~~ip~~-~~-----~~m~~~~~~~~~~~l~~gH~p~ls~P~~~~~~i~~~a~~~~ 271 (273)
T PLN02211 208 DIDKVPRVYIKTLHDHVVKPE-QQ-----EAMIKRWPPSQVYELESDHSPFFSTPFLLFGLLIKAAASVG 271 (273)
T ss_pred ccCccceEEEEeCCCCCCCHH-HH-----HHHHHhCCccEEEEECCCCCccccCHHHHHHHHHHHHHHhc
Confidence 34 799999999999999854 33 67888889989999977999999999999999999887654
No 38
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.88 E-value=2.4e-09 Score=69.88 Aligned_cols=57 Identities=21% Similarity=0.439 Sum_probs=51.2
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHH
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETL 96 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~ 96 (105)
..+++|+|+++|++|+++++... ..+.+.+|+.+.+.+++ ||+.+++.|+++++.|.
T Consensus 172 ~~i~~p~l~i~~~~D~~~p~~~~------~~~~~~~~~~~~~~~~~~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 172 SNIKVPTLIIWGEDDPLVPPESS------EQLAKLIPNSQLVLIEGSGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp TTTTSEEEEEEETTCSSSHHHHH------HHHHHHSTTEEEEEETTCCSTHHHHSHHHHHHHHH
T ss_pred cccCCCeEEEEeCCCCCCCHHHH------HHHHHhcCCCEEEECCCCChHHHhcCHHhhhhhhc
Confidence 47999999999999999985444 55888999999999999 99999999999999885
No 39
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.85 E-value=6.5e-09 Score=68.71 Aligned_cols=64 Identities=17% Similarity=0.063 Sum_probs=57.6
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
+.+++||||++.|..|++++.+.+ ..+....+.+++.+++. +|.+++.-|++++..+++||+..
T Consensus 212 lp~vkcPtli~hG~kDp~~~~~hv------~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 212 LPQVKCPTLIMHGGKDPFCGDPHV------CFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKST 276 (277)
T ss_pred cccccCCeeEeeCCcCCCCCCCCc------cchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhcc
Confidence 458999999999999999986655 67888889999999998 99999999999999999999854
No 40
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.79 E-value=6.5e-09 Score=85.35 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=52.2
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC------------cceEEecC-CCCcchhcHHHHHHHHHHhh
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN------------LEVVILDG-HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~i~~-gH~~~~e~p~~v~~~l~~fl 99 (105)
..++++|+|+|+|++|..++ ... ..+.+.+++ +++++|++ ||++++|+|+++++.|.+||
T Consensus 1564 L~~I~~PtLlI~Ge~D~~~~-~~a------~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL 1636 (1655)
T PLN02980 1564 LKQCDTPLLLVVGEKDVKFK-QIA------QKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFL 1636 (1655)
T ss_pred HhhCCCCEEEEEECCCCccH-HHH------HHHHHHccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHH
Confidence 35889999999999998764 222 445555555 58999999 99999999999999999999
Q ss_pred hcCC
Q 047403 100 SFQD 103 (105)
Q Consensus 100 ~~~~ 103 (105)
....
T Consensus 1637 ~~~~ 1640 (1655)
T PLN02980 1637 TRLH 1640 (1655)
T ss_pred Hhcc
Confidence 8653
No 41
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=98.76 E-value=6.7e-09 Score=72.43 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=51.0
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC--CCcceEEecC-CCCcchhcHH----HHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI--PNLEVVILDG-HHFIQQERAQ----EVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-gH~~~~e~p~----~v~~~l~~fl~~~ 102 (105)
...+++|+|+|+|++|.++++... +.+.+.+ ++.+++++++ ||.++.++|+ ++.+.|.+||.+.
T Consensus 247 l~~i~~PvLii~G~~D~ivp~~~~------~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 247 LKDVSIPFIVLHGSADVVTDPDVS------RALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNER 317 (330)
T ss_pred hhhcCCCEEEEecCCCCCCCHHHH------HHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999986544 4454444 4789999999 9999998885 4777888898754
No 42
>PRK10749 lysophospholipase L2; Provisional
Probab=98.76 E-value=8.2e-09 Score=72.32 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=50.9
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-------CCcceEEecC-CCCcchhcH---HHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-------PNLEVVILDG-HHFIQQERA---QEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~-gH~~~~e~p---~~v~~~l~~fl~~ 101 (105)
..++++|+|+|+|++|.++++... +.+.+.+ ++.+++++++ ||.++.|.+ +.+.+.|.+|+++
T Consensus 255 ~~~i~~P~Lii~G~~D~vv~~~~~------~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 255 AGDITTPLLLLQAEEERVVDNRMH------DRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNR 328 (330)
T ss_pred ccCCCCCEEEEEeCCCeeeCHHHH------HHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhh
Confidence 357899999999999999986543 3344433 4568999999 999999886 5788999999986
Q ss_pred C
Q 047403 102 Q 102 (105)
Q Consensus 102 ~ 102 (105)
+
T Consensus 329 ~ 329 (330)
T PRK10749 329 H 329 (330)
T ss_pred c
Confidence 4
No 43
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.63 E-value=4.5e-08 Score=70.54 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC--CCcceEEecC-CCCcchh-cHHHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI--PNLEVVILDG-HHFIQQE-RAQEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-gH~~~~e-~p~~v~~~l~~fl~~~ 102 (105)
..++++|+|+|+|++|.++++... ..+.+.+ ++.++..+++ +|.+..| +|+++.+.|.+||+..
T Consensus 320 L~~I~vPvLIi~G~~D~vvp~~~a------~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 320 FKSVTVPFMVLHGTADRVTDPLAS------QDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKR 387 (395)
T ss_pred cccCCCCEEEEEeCCCCCCCHHHH------HHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHH
Confidence 458899999999999999985554 3343333 3478899999 9999776 8999999999999854
No 44
>PRK10985 putative hydrolase; Provisional
Probab=98.58 E-value=1.3e-07 Score=66.16 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=57.9
Q ss_pred CCcchhhhhhhcCCCHHHhhccCCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcH
Q 047403 10 GFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERA 88 (105)
Q Consensus 10 g~~~~~~~yr~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p 88 (105)
|+.....+|+..... . ...++++|+++|+|++|+++++... ..+.+..+++++.++++ ||+.++|..
T Consensus 234 g~~~~~~~y~~~~~~-~-----~l~~i~~P~lii~g~~D~~~~~~~~------~~~~~~~~~~~~~~~~~~GH~~~~~g~ 301 (324)
T PRK10985 234 GFADAIDYYRQCSAL-P-----LLNQIRKPTLIIHAKDDPFMTHEVI------PKPESLPPNVEYQLTEHGGHVGFVGGT 301 (324)
T ss_pred CCCCHHHHHHHCChH-H-----HHhCCCCCEEEEecCCCCCCChhhC------hHHHHhCCCeEEEECCCCCceeeCCCC
Confidence 677777777754421 1 1348999999999999999885544 44667788999999999 999998853
Q ss_pred -----HHHHHHHHHhhh
Q 047403 89 -----QEVSNETLSFAS 100 (105)
Q Consensus 89 -----~~v~~~l~~fl~ 100 (105)
-..-+.+.+|+.
T Consensus 302 ~~~~~~w~~~~~~~~~~ 318 (324)
T PRK10985 302 LLKPQMWLEQRIPDWLT 318 (324)
T ss_pred CCCCCccHHHHHHHHHH
Confidence 255566666664
No 45
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.40 E-value=4.9e-07 Score=62.64 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=43.9
Q ss_pred cc-cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchh-cHHHHHHHHHHh
Q 047403 35 KV-TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQE-RAQEVSNETLSF 98 (105)
Q Consensus 35 ~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e-~p~~v~~~l~~f 98 (105)
++ +||+|+|+|++|.+++.... ..+.+.+++.++.++++ ||+++.+ .-+.+.+.|.+|
T Consensus 245 ~i~~~P~lii~g~~D~~~p~~~~------~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~i~~~~~~~ 305 (306)
T TIGR01249 245 KIRNIPTYIVHGRYDLCCPLQSA------WALHKAFPEAELKVTNNAGHSAFDPNNLAALVHALETY 305 (306)
T ss_pred hccCCCeEEEecCCCCCCCHHHH------HHHHHhCCCCEEEEECCCCCCCCChHHHHHHHHHHHHh
Confidence 55 69999999999999985443 67888899999999999 9998733 234444444444
No 46
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.38 E-value=8.3e-07 Score=57.35 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=48.6
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
..+++|+++++|.+|.+.+.... ..+.+..++ .+..++++ ||+++.|+|+.+++.+.+|+.
T Consensus 218 ~~~~~P~l~i~g~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~~~~ 280 (282)
T COG0596 218 ARITVPTLIIHGEDDPVVPAELA------RRLAAALPNDARLVVIPGAGHFPHLEAPEAFAAALLAFLE 280 (282)
T ss_pred ccCCCCeEEEecCCCCcCCHHHH------HHHHhhCCCCceEEEeCCCCCcchhhcHHHHHHHHHHHHh
Confidence 47789999999999955542211 456666775 89999999 999999999999999998554
No 47
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.37 E-value=5.4e-07 Score=65.33 Aligned_cols=61 Identities=5% Similarity=-0.106 Sum_probs=51.6
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHhhhcC
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
+++++|+|+|+|++|.++|.... +.+.+..|+.++..+++. ++.+.|+++++.|.+||.+.
T Consensus 352 ~~i~~PvLiI~G~~D~ivP~~~a------~~l~~~~~~~~l~~i~~~--~~~e~~~~~~~~i~~wL~~~ 412 (414)
T PRK05077 352 RRCPTPMLSGYWKNDPFSPEEDS------RLIASSSADGKLLEIPFK--PVYRNFDKALQEISDWLEDR 412 (414)
T ss_pred cCCCCcEEEEecCCCCCCCHHHH------HHHHHhCCCCeEEEccCC--CccCCHHHHHHHHHHHHHHH
Confidence 47899999999999999985554 566777899999999995 45579999999999999764
No 48
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.33 E-value=4.2e-07 Score=62.28 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=46.7
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC--CCcceEEecC-CCCc-chhcHHHHHHHHHHhhhc
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI--PNLEVVILDG-HHFI-QQERAQEVSNETLSFASF 101 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-gH~~-~~e~p~~v~~~l~~fl~~ 101 (105)
.+++|+|+++|.+|...+ .....+..+....+.+ +++++..+++ ||++ ..+.++++++.|.+||+.
T Consensus 205 ~~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 205 RFQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred hcCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 678999999999998753 1110000002233333 8899999999 9999 555669999999999963
No 49
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.21 E-value=2.8e-06 Score=59.85 Aligned_cols=58 Identities=29% Similarity=0.365 Sum_probs=47.3
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhc--CCCcceEEecC-CCCcchhc-HHHHHHHHHHhhh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRY--IPNLEVVILDG-HHFIQQER-AQEVSNETLSFAS 100 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~-gH~~~~e~-p~~v~~~l~~fl~ 100 (105)
++|+|+|+|++|.++++... ..+.+. .++.++.++++ +|.++.|. ++++.+.|.+||.
T Consensus 270 ~~P~Lii~G~~D~vv~~~~~------~~~~~~~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 270 DIPILFIHSKGDCVCSYEGT------VSFYNKLSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCEEEEEeCCCCccCHHHH------HHHHHhccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 79999999999999885554 333322 35788999999 99999885 7899999999986
No 50
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.20 E-value=4.2e-06 Score=55.00 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=51.1
Q ss_pred ccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcc-hhcHHHHHHHHHHhhhcC
Q 047403 36 VTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQ-QERAQEVSNETLSFASFQ 102 (105)
Q Consensus 36 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~-~e~p~~v~~~l~~fl~~~ 102 (105)
+++|+|++.|++|..+++.....+. ..+.+....+++.++++ ||.+. .+...++.+.+.+|++..
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~--~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLY--NALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKY 209 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHH--HHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHH--HHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 8899999999999999866654433 45555555689999999 99665 566678999999999854
No 51
>PLN02872 triacylglycerol lipase
Probab=98.20 E-value=2.2e-06 Score=61.86 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=50.8
Q ss_pred Ccc--cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCC---cchhcHHHHHHHHHHhhhcC
Q 047403 34 TKV--TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHF---IQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 34 ~~~--~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~---~~~e~p~~v~~~l~~fl~~~ 102 (105)
.++ ++|+++++|++|.++++... ..+.+.+++ .++..+++ ||. ...|.|++|.+.|.+|+++.
T Consensus 320 ~~i~~~~Pv~i~~G~~D~lv~~~dv------~~l~~~Lp~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~ 389 (395)
T PLN02872 320 SLIPKSLPLWMGYGGTDGLADVTDV------EHTLAELPSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSL 389 (395)
T ss_pred ccCCCCccEEEEEcCCCCCCCHHHH------HHHHHHCCCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHh
Confidence 355 68999999999999875554 455666676 68888999 995 56699999999999999864
No 52
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.16 E-value=3.5e-06 Score=59.56 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=47.5
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhc--CCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRY--IPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
.||+++|.|++|-+..... ..+.+. ...++..+|++ ||++.+|+|+.+++.+.++++..
T Consensus 303 ~~pv~fiyG~~dWmD~~~g-------~~~~~~~~~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 303 DVPVTFIYGDRDWMDKNAG-------LEVTKSLMKEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECDKV 364 (365)
T ss_pred CCCEEEEecCcccccchhH-------HHHHHHhhcccceEEEecCCCceeecCCHHHHHHHHHHHHhcc
Confidence 5999999999998865322 334442 33489999999 99999999999999999998753
No 53
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=98.13 E-value=5.1e-06 Score=49.35 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=51.4
Q ss_pred ccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 36 VTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 36 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
-..|+|+|.++.|+.++.... ..+.+.+++++++++++ ||-.....-.-+.+++.+||..
T Consensus 33 ~~~piL~l~~~~Dp~TP~~~a------~~~~~~l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 33 GAPPILVLGGTHDPVTPYEGA------RAMAARLPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCCEEEEecCcCCCCcHHHH------HHHHHHCCCceEEEEeccCcceecCCChHHHHHHHHHHHc
Confidence 359999999999999996554 77899999999999999 9999865556689999999974
No 54
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.10 E-value=2.9e-06 Score=59.95 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC--cceEEecCCCCcchhc---HHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN--LEVVILDGHHFIQQER---AQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~gH~~~~e~---p~~v~~~l~~fl~~ 101 (105)
..+++||+++++|++|.++++... ..+.+.+++ .++.++++||+..... ++++.+.|.+|+++
T Consensus 282 l~~i~~Pvliv~G~~D~i~~~~~~------~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 282 LKNIKMPILNIYAERDHLVPPDAS------KALNDLVSSEDYTELSFPGGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred HHhCCCCeEEEecCCCCcCCHHHH------HHHHHHcCCCCeEEEEcCCCCEEEEECchhHhhhhHHHHHHHHh
Confidence 347899999999999999985554 445555554 4566667799987665 47899999999975
No 55
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.07 E-value=4e-06 Score=56.64 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=51.8
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCC-CcceEEecCCCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIP-NLEVVILDGHHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
..++||+.++.|++|..++...+ ..+++... ..++.+++||||...++.++|...|.+.+..
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~------~~W~~~t~~~f~l~~fdGgHFfl~~~~~~v~~~i~~~l~~ 235 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDEL------GAWREHTKGDFTLRVFDGGHFFLNQQREEVLARLEQHLAH 235 (244)
T ss_pred CCcCcceEEeccCcchhccHHHH------HHHHHhhcCCceEEEecCcceehhhhHHHHHHHHHHHhhh
Confidence 38899999999999999875444 44555555 5899999999999999999999999998853
No 56
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.06 E-value=2.7e-06 Score=63.47 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=44.1
Q ss_pred CCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHH
Q 047403 32 EGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQ 89 (105)
Q Consensus 32 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~ 89 (105)
....|++|+|+|+|++|.++++... ..+.+.+++.+..++++ ||.+++++|.
T Consensus 410 dL~~I~vPvLvV~G~~D~IvP~~sa------~~l~~~i~~~~~~vL~~sGHi~~ienPp 462 (532)
T TIGR01838 410 DLSKVKVPVYIIATREDHIAPWQSA------YRGAALLGGPKTFVLGESGHIAGVVNPP 462 (532)
T ss_pred chhhCCCCEEEEeeCCCCcCCHHHH------HHHHHHCCCCEEEEECCCCCchHhhCCC
Confidence 4568999999999999999985544 55677889988889999 9999999985
No 57
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.05 E-value=5e-06 Score=65.95 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=53.6
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcce-EEecC-CCCcchh---cHHHHHHHHHHhhhcCC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEV-VILDG-HHFIQQE---RAQEVSNETLSFASFQD 103 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~-gH~~~~e---~p~~v~~~l~~fl~~~~ 103 (105)
+.++++|+|+|||++|.++++... ..+.+.+|++++ .++++ ||+.++- -|+++...|.+||.+.+
T Consensus 293 L~~i~~P~L~i~G~~D~ivp~~~~------~~l~~~i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~ 362 (994)
T PRK07868 293 LADITCPVLAFVGEVDDIGQPASV------RGIRRAAPNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLE 362 (994)
T ss_pred hhhCCCCEEEEEeCCCCCCCHHHH------HHHHHhCCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhc
Confidence 468999999999999999985454 567788999987 67788 9998754 57889999999998654
No 58
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.85 E-value=3.5e-05 Score=58.57 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=54.7
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcch-hcHHHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQ-ERAQEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~-e~p~~v~~~l~~fl~~~ 102 (105)
..++++|+|+|+|..|.-++......++ ..+++..-.++++++++ ||.+.. ++-..+...+++|+.++
T Consensus 547 ~~~i~~P~LliHG~~D~~v~~~q~~~~~--~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~ 616 (620)
T COG1506 547 ADNIKTPLLLIHGEEDDRVPIEQAEQLV--DALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRH 616 (620)
T ss_pred hcccCCCEEEEeecCCccCChHHHHHHH--HHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHH
Confidence 3489999999999999999866654443 55666566789999999 999986 66777888899998764
No 59
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.67 E-value=9.5e-05 Score=51.58 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=50.6
Q ss_pred CcccccEEEEeeCCCCCCC-CCCchhhhhhhhhh-hcCCCcceEEecC-CCCcchhc-H--HHHHHHHHHhhhcCC
Q 047403 34 TKVTIAMKFIVGDKDIGFE-SNGTREYITRDVFK-RYIPNLEVVILDG-HHFIQQER-A--QEVSNETLSFASFQD 103 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~i~~-gH~~~~e~-p--~~v~~~l~~fl~~~~ 103 (105)
..+++|+|+++|+.|.+++ .....+ .+. ...++.+++++++ .|.++.|. . +++.+.+.+|+.+..
T Consensus 225 ~~~~~PvLll~g~~D~vv~~~~~~~~-----~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 225 PAIALPVLLLQGGDDRVVDNVEGLAR-----FFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred ccccCCEEEEecCCCccccCcHHHHH-----HHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 4889999999999999988 344432 222 2357789999999 99999774 4 789999999998654
No 60
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.64 E-value=0.00012 Score=51.68 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=59.2
Q ss_pred cCCcchhhhhhhcCCCHHHhhccCCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhh-cCCCcceEEecC-CCCcchh
Q 047403 9 SGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKR-YIPNLEVVILDG-HHFIQQE 86 (105)
Q Consensus 9 ~g~~~~~~~yr~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~-gH~~~~e 86 (105)
.||..+..+|++...-- .+.+|++|+|+|.+.+|+++++..+. .... ..|++.+..-+- ||.-.+.
T Consensus 252 ~Gf~da~dYYr~aSs~~------~L~~Ir~PtLii~A~DDP~~~~~~iP------~~~~~~np~v~l~~t~~GGHvGfl~ 319 (345)
T COG0429 252 HGFADAEDYYRQASSLP------LLPKIRKPTLIINAKDDPFMPPEVIP------KLQEMLNPNVLLQLTEHGGHVGFLG 319 (345)
T ss_pred cCCCcHHHHHHhccccc------cccccccceEEEecCCCCCCChhhCC------cchhcCCCceEEEeecCCceEEecc
Confidence 47888888888764321 24599999999999999999865552 2232 678898888887 9988777
Q ss_pred ----cHH-HHHHHHHHhhhc
Q 047403 87 ----RAQ-EVSNETLSFASF 101 (105)
Q Consensus 87 ----~p~-~v~~~l~~fl~~ 101 (105)
+|. ..-+.|.+|++.
T Consensus 320 ~~~~~~~~W~~~ri~~~l~~ 339 (345)
T COG0429 320 GKLLHPQMWLEQRILDWLDP 339 (345)
T ss_pred CccccchhhHHHHHHHHHHH
Confidence 443 566777777763
No 61
>PRK11460 putative hydrolase; Provisional
Probab=97.63 E-value=0.00013 Score=48.96 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=46.8
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
..+.|+++++|++|.+++.....+.. +.+++.-.++++..+++ ||.+..+.-+.+.+-|.+++.
T Consensus 146 ~~~~pvli~hG~~D~vvp~~~~~~~~--~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 146 PTATTIHLIHGGEDPVIDVAHAVAAQ--EALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTVP 210 (232)
T ss_pred cCCCcEEEEecCCCCccCHHHHHHHH--HHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHcc
Confidence 45789999999999999865543221 33443334578888899 999988777777777777764
No 62
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00016 Score=48.40 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=46.9
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcH--HHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERA--QEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p--~~v~~~l~~fl~~ 101 (105)
.+.+++|+|-|.|+.|.+++.... ..+...+++..+..-++||+++-..+ +.+++-|..++++
T Consensus 159 ~~~i~~PSLHi~G~~D~iv~~~~s------~~L~~~~~~a~vl~HpggH~VP~~~~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 159 KRPLSTPSLHIFGETDTIVPSERS------EQLAESFKDATVLEHPGGHIVPNKAKYKEKIADFIQSFLQE 223 (230)
T ss_pred ccCCCCCeeEEecccceeecchHH------HHHHHhcCCCeEEecCCCccCCCchHHHHHHHHHHHHHHHh
Confidence 358999999999999999984333 66888899997666677999997774 3455555555443
No 63
>PRK10566 esterase; Provisional
Probab=97.56 E-value=8.7e-05 Score=49.56 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=41.8
Q ss_pred cc-cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCC------CcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 35 KV-TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIP------NLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 35 ~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
++ ++|+|+|+|++|.++++... ..+.+.++ ++++.++++ ||.+. | +..+.+.+||+..
T Consensus 183 ~i~~~P~Lii~G~~D~~v~~~~~------~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---~-~~~~~~~~fl~~~ 248 (249)
T PRK10566 183 QLADRPLLLWHGLADDVVPAAES------LRLQQALRERGLDKNLTCLWEPGVRHRIT---P-EALDAGVAFFRQH 248 (249)
T ss_pred hcCCCCEEEEEcCCCCcCCHHHH------HHHHHHHHhcCCCcceEEEecCCCCCccC---H-HHHHHHHHHHHhh
Confidence 44 79999999999999986554 33333332 357778899 99864 3 4678888888753
No 64
>COG1647 Esterase/lipase [General function prediction only]
Probab=97.45 E-value=0.00016 Score=48.55 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=50.0
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCCcchh-cHHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHFIQQE-RAQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~~~~e-~p~~v~~~l~~fl~~ 101 (105)
...|..|++++.|++|.+++....+ -......++ -++.++++ ||.+-.+ +.+.|.+.+.+||+.
T Consensus 177 ~~~I~~pt~vvq~~~D~mv~~~sA~-----~Iy~~v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 177 LDKIYSPTLVVQGRQDEMVPAESAN-----FIYDHVESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred hhhcccchhheecccCCCCCHHHHH-----HHHHhccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 3488999999999999999866653 223333444 58899999 9988755 678999999999963
No 65
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.37 E-value=0.0005 Score=50.75 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=48.6
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhh--------------------------hhcCC-----CcceEEecC-CCCcc
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVF--------------------------KRYIP-----NLEVVILDG-HHFIQ 84 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~--------------------------~~~~~-----~~~~~~i~~-gH~~~ 84 (105)
.+++|+..|+.|.+++.......+ +.+ .+... +++++.|.+ ||+++
T Consensus 364 gikVLiYnGd~D~icn~~Gt~~wi--~~L~w~g~~~f~~a~~~~w~~~~~~v~G~vk~~~~~~~~~l~~~~V~~AGH~vp 441 (462)
T PTZ00472 364 GVRVMIYAGDMDFICNWIGNKAWT--LALQWPGNAEFNAAPDVPFSAVDGRWAGLVRSAASNTSSGFSFVQVYNAGHMVP 441 (462)
T ss_pred CceEEEEECCcCeecCcHhHHHHH--HhCCCCCccchhhcCccccEecCCEeceEEEEEecccCCCeEEEEECCCCccCh
Confidence 489999999999988765443221 111 11123 577888889 99999
Q ss_pred hhcHHHHHHHHHHhhhcCC
Q 047403 85 QERAQEVSNETLSFASFQD 103 (105)
Q Consensus 85 ~e~p~~v~~~l~~fl~~~~ 103 (105)
.++|+++.++|.+|+...+
T Consensus 442 ~d~P~~~~~~i~~fl~~~~ 460 (462)
T PTZ00472 442 MDQPAVALTMINRFLRNRP 460 (462)
T ss_pred hhHHHHHHHHHHHHHcCCC
Confidence 9999999999999998665
No 66
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.30 E-value=0.00043 Score=48.05 Aligned_cols=64 Identities=9% Similarity=0.168 Sum_probs=46.4
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
.....||+|++.|+..+... ... +.-.+.-|. .++..+++ |=.+.+|+|+.++..+.=||+..+
T Consensus 215 ~~~~~c~vLlvvG~~Sp~~~--~vv-----~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~G 280 (283)
T PF03096_consen 215 RPSLGCPVLLVVGDNSPHVD--DVV-----EMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGMG 280 (283)
T ss_dssp CTTCCS-EEEEEETTSTTHH--HHH-----HHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEEecCCcchh--hHH-----HHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHccCC
Confidence 34667999999999998864 221 223333444 68888999 999999999999999999998654
No 67
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.29 E-value=0.00056 Score=45.22 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=38.9
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
+.|+++++|+.|+++|....+.. .+.+++...+++++.+++ ||-+.. +..+.+.+||++
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~--~~~L~~~~~~v~~~~~~g~gH~i~~----~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKT--AEFLKAAGANVEFHEYPGGGHEISP----EELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHH--HHHHHCTT-GEEEEEETT-SSS--H----HHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHH--HHHHHhcCCCEEEEEcCCCCCCCCH----HHHHHHHHHHhh
Confidence 68999999999999985544332 245555566789999998 998864 445556677654
No 68
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.27 E-value=0.00013 Score=48.47 Aligned_cols=51 Identities=16% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecCCCCcchhcHH
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDGHHFIQQERAQ 89 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~gH~~~~e~p~ 89 (105)
..+|++|+|.|+|++|.++++... ..+.+.+.+ .++...++||.++...++
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~s------~~L~~~~~~~~~v~~h~gGH~vP~~~~~ 208 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPERS------EALAEMFDPDARVIEHDGGHHVPRKKED 208 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHHH------HHHHHHHHHHEEEEEESSSSS----HHH
T ss_pred cccCCCCeEEEEeCCCCCcchHHH------HHHHHhccCCcEEEEECCCCcCcCChhh
Confidence 347899999999999999873332 567777777 788888889999987654
No 69
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.26 E-value=0.00074 Score=47.12 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=48.7
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
.++||||++.|++.+... ..+ +--.+.-|. .++..|.+ |=.+++|+|..+++.+.=|++..+
T Consensus 244 tlkc~vllvvGd~Sp~~~-~vv------~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~G 307 (326)
T KOG2931|consen 244 TLKCPVLLVVGDNSPHVS-AVV------ECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGMG 307 (326)
T ss_pred cccccEEEEecCCCchhh-hhh------hhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHccCC
Confidence 667999999999999875 232 223333443 68888899 999999999999999999998543
No 70
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.25 E-value=0.00048 Score=49.37 Aligned_cols=63 Identities=22% Similarity=0.302 Sum_probs=42.8
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhh--------------------hhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHH
Q 047403 38 IAMKFIVGDKDIGFESNGTREYIT--------------------RDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETL 96 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~ 96 (105)
+++|+..|..|.+++....+..+. .....+...++++..|.+ ||+++.++|++..++|.
T Consensus 331 irVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~dqP~~a~~m~~ 410 (415)
T PF00450_consen 331 IRVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQDQPEAALQMFR 410 (415)
T ss_dssp -EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHH
T ss_pred ceeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChhhCHHHHHHHHH
Confidence 899999999999987433321110 011122235667899999 99999999999999999
Q ss_pred Hhhh
Q 047403 97 SFAS 100 (105)
Q Consensus 97 ~fl~ 100 (105)
+||+
T Consensus 411 ~fl~ 414 (415)
T PF00450_consen 411 RFLK 414 (415)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9986
No 71
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=97.23 E-value=0.0005 Score=45.34 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=41.3
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhc--------HHHHHHHHHHhhhcC
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQER--------AQEVSNETLSFASFQ 102 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~--------p~~v~~~l~~fl~~~ 102 (105)
.++++|+++++|+.|+.++.+....+. +.+.+....+++++++| +|-..... .++-.+.+.+||+++
T Consensus 142 ~~~~~P~l~~~g~~D~~~~~~~~~~~~--~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 142 PKIKAPVLILFGENDPFFPPEEVEALE--EALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp GG--S-EEEEEETT-TTS-HHHHHHHH--HHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC-
T ss_pred cccCCCEeecCccCCCCCChHHHHHHH--HHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 388999999999999998855443222 44544456789999999 99766432 235666777777653
No 72
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.17 E-value=0.00086 Score=45.85 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=46.1
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
+.++||+|++.|..|.+++...- ..+-+..++ .+-.++.| ||.-. |...+....|.+|+..
T Consensus 189 ~~i~~PVLiiHgtdDevv~~sHg------~~Lye~~k~~~epl~v~g~gH~~~-~~~~~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 189 SKITCPVLIIHGTDDEVVDFSHG------KALYERCKEKVEPLWVKGAGHNDI-ELYPEYIEHLRRFISS 251 (258)
T ss_pred eeccCCEEEEecccCceeccccc------HHHHHhccccCCCcEEecCCCccc-ccCHHHHHHHHHHHHH
Confidence 48899999999999999986554 556666666 58888999 99554 4444577777777764
No 73
>PRK11071 esterase YqiA; Provisional
Probab=97.14 E-value=0.00092 Score=43.63 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=42.3
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
+.++|+++|.|+.|.++++... .+...+++...++| +|-. +..++..+.+.+|+.
T Consensus 134 ~~~~~v~iihg~~De~V~~~~a---------~~~~~~~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 134 ESPDLIWLLQQTGDEVLDYRQA---------VAYYAACRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred CChhhEEEEEeCCCCcCCHHHH---------HHHHHhcceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 4678889999999999985433 33334677888999 9977 555889999999975
No 74
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.13 E-value=0.0004 Score=46.22 Aligned_cols=48 Identities=29% Similarity=0.429 Sum_probs=25.7
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhc-CC-CcceEEecC-CCCc
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRY-IP-NLEVVILDG-HHFI 83 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~-gH~~ 83 (105)
++++|+|+|.|++|.+.+...+.+.+ .+++++. .+ +.+...+++ ||++
T Consensus 113 ~i~~piLli~g~dD~~WpS~~~a~~i-~~rL~~~~~~~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 113 KIKGPILLISGEDDQIWPSSEMAEQI-EERLKAAGFPHNVEHLSYPGAGHLI 163 (213)
T ss_dssp G--SEEEEEEETT-SSS-HHHHHHHH-HHHHHCTT-----EEEEETTB-S--
T ss_pred HcCCCEEEEEeCCCCccchHHHHHHH-HHHHHHhCCCCcceEEEcCCCCcee
Confidence 78999999999999998754443222 1223332 23 467888899 9985
No 75
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=97.09 E-value=0.00042 Score=42.21 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=31.0
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCC-CcceEEecC-CCC
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIP-NLEVVILDG-HHF 82 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~-gH~ 82 (105)
..++|+++++|++|.+++.... +.+.+.++ +.++..+++ +|+
T Consensus 102 ~~~~pv~~i~g~~D~~~~~~~~------~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 102 KIRIPVLFIHGENDPLVPPEQV------RRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp TTTSEEEEEEETT-SSSHHHHH------HHHHHHHCSSEEEEEETTS-TT
T ss_pred ccCCcEEEEEECCCCcCCHHHH------HHHHHHcCCCcEEEEeCCCcCc
Confidence 7788999999999999975444 44444454 579999999 995
No 76
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=97.01 E-value=0.00079 Score=45.30 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=44.9
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
..+||+|.++|..|.++|.++. ..+++.+|+-++.+||| .|-.-..+.+ .+.+.+.|..
T Consensus 197 d~~C~VLTvhGs~D~IVPve~A------kefAk~i~nH~L~iIEgADHnyt~~q~~-l~~lgl~f~k 256 (269)
T KOG4667|consen 197 DKQCRVLTVHGSEDEIVPVEDA------KEFAKIIPNHKLEIIEGADHNYTGHQSQ-LVSLGLEFIK 256 (269)
T ss_pred CccCceEEEeccCCceeechhH------HHHHHhccCCceEEecCCCcCccchhhh-HhhhcceeEE
Confidence 5579999999999999997765 67889999999999999 9966543332 3444444443
No 77
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.93 E-value=0.0013 Score=45.99 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=49.4
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC--CCcceEEecC-CCCcch----hcHHHHHHHHHHhhhcC
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI--PNLEVVILDG-HHFIQQ----ERAQEVSNETLSFASFQ 102 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-gH~~~~----e~p~~v~~~l~~fl~~~ 102 (105)
..++++|.++++|+.|.++++... +.+-+.. .+-++..++| =|-+.. |+-+.|..-|.+||++.
T Consensus 242 l~~vtvPflilHG~dD~VTDp~~S------k~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 242 LNEVTVPFLILHGTDDKVTDPKVS------KELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccccEEEEecCCCcccCcHHH------HHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 458999999999999999996555 3344433 4568999999 998774 45567888999999864
No 78
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=96.79 E-value=0.0033 Score=42.41 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=45.2
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC--cceEEecC-CCCcc-----hhcH------HHHHHHHHHhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN--LEVVILDG-HHFIQ-----QERA------QEVSNETLSFA 99 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~-gH~~~-----~e~p------~~v~~~l~~fl 99 (105)
..+.+|+|+++|+.|..+++..+... +..-+..|. ..+.++++ ||-.. .+.| ++..+.+.+|+
T Consensus 161 ~~vk~Pilfl~ae~D~~~p~~~v~~~---ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf 237 (242)
T KOG3043|consen 161 ANVKAPILFLFAELDEDVPPKDVKAW---EEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWF 237 (242)
T ss_pred hcCCCCEEEEeecccccCCHHHHHHH---HHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHH
Confidence 37789999999999999987766432 112222333 35899999 99655 2344 46777788887
Q ss_pred hcC
Q 047403 100 SFQ 102 (105)
Q Consensus 100 ~~~ 102 (105)
...
T Consensus 238 ~~y 240 (242)
T KOG3043|consen 238 KHY 240 (242)
T ss_pred HHh
Confidence 754
No 79
>PRK13604 luxD acyl transferase; Provisional
Probab=96.66 E-value=0.0017 Score=45.66 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=36.7
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC--CCcceEEecC-CCCcchhcHH
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI--PNLEVVILDG-HHFIQQERAQ 89 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~-gH~~~~e~p~ 89 (105)
..+++|+|+|+|+.|.+++.... ..+.+.+ .+.++..++| +|-+. |++.
T Consensus 199 ~~l~~PvLiIHG~~D~lVp~~~s------~~l~e~~~s~~kkl~~i~Ga~H~l~-~~~~ 250 (307)
T PRK13604 199 KGLDIPFIAFTANNDSWVKQSEV------IDLLDSIRSEQCKLYSLIGSSHDLG-ENLV 250 (307)
T ss_pred hhcCCCEEEEEcCCCCccCHHHH------HHHHHHhccCCcEEEEeCCCccccC-cchH
Confidence 36789999999999999996555 3444544 3689999999 99554 4544
No 80
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=96.62 E-value=0.0073 Score=42.56 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=46.4
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhh------------------hhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHH
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITR------------------DVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETL 96 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~ 96 (105)
.+++|+..|+.|.+++....+..++. .+..+...+ +++..|-+ ||+++ .+|+...+++.
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV~-~qP~~al~m~~ 311 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 311 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCCC-cCHHHHHHHHH
Confidence 47999999999988775443322100 011111233 78888889 99997 59999999999
Q ss_pred HhhhcCC
Q 047403 97 SFASFQD 103 (105)
Q Consensus 97 ~fl~~~~ 103 (105)
+|+...+
T Consensus 312 ~fi~~~~ 318 (319)
T PLN02213 312 RWISGQP 318 (319)
T ss_pred HHHcCCC
Confidence 9998754
No 81
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=96.62 E-value=0.003 Score=42.37 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=51.7
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcc-hhcHHHHHHHHHHhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQ-QERAQEVSNETLSFA 99 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~-~e~p~~v~~~l~~fl 99 (105)
....+|-|+|.++.|.+++...++++. +..++..-+++.+.+++ +|..| .++|++-.+++.+|+
T Consensus 175 ~~~~~p~lylYS~~D~l~~~~~ve~~~--~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 175 SPSRCPRLYLYSKADPLIPWRDVEEHA--EEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCCeEEecCCCCcCcCHHHHHHHH--HHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 366799999999999999988887664 44555444578888899 99999 558999999999885
No 82
>COG0400 Predicted esterase [General function prediction only]
Probab=96.47 E-value=0.007 Score=40.34 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=40.5
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHH
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSN 93 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~ 93 (105)
.-..|++++.|..|++++.....+. .+.+.+..-+++...+++||-+..|.-+++.+
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l--~~~l~~~g~~v~~~~~~~GH~i~~e~~~~~~~ 200 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEAL--AEYLTASGADVEVRWHEGGHEIPPEELEAARS 200 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHH--HHHHHHcCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 3458999999999999986554322 23444445567888889999888776655554
No 83
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0052 Score=44.10 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=52.7
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcc-eEEecC--CCCcchhcHHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLE-VVILDG--HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~--gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
+.++++|+|++.-..|.++|+... +.+.+.++... +..|+. ||--.+...+.+...|..||+.
T Consensus 302 l~~i~~~~lv~gi~sD~lfp~~~~------~~~~~~L~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 302 LARIKAPVLVVGITSDWLFPPELQ------RALAEALPAAGALREIDSPYGHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred HhcCccCEEEEEecccccCCHHHH------HHHHHhccccCceEEecCCCCchhhhcchhhhhHHHHHHhhc
Confidence 447999999999999999986554 56777777766 777766 9999999999999999999975
No 84
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.34 E-value=0.0069 Score=43.25 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=47.0
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcc-hhcHHHHHHHHHHhhh
Q 047403 38 IAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQ-QERAQEVSNETLSFAS 100 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~-~e~p~~v~~~l~~fl~ 100 (105)
-.+.+|.+++|.++|...+ ..+.+..|++++.++++||... +-+.+.+.++|.+-++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v------~~Lq~~WPGsEvR~l~gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGV------LSLQEIWPGSEVRYLPGGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CcEEEEEecCceEechhhc------chHHHhCCCCeEEEecCCcEEEeeechHHHHHHHHHHhh
Confidence 3478999999999986666 5789999999999999999876 5667788888877654
No 85
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.26 E-value=0.017 Score=39.14 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=56.3
Q ss_pred CCcchhhhhhhcCCCHHHhhccCCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhc-
Q 047403 10 GFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQER- 87 (105)
Q Consensus 10 g~~~~~~~yr~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~- 87 (105)
.++++..||-......... ..++++|+|++.|+.|..++......+ ...+.....+.++.++++ +|-..-+.
T Consensus 135 ~v~a~v~fyg~~~~~~~~~----~~~~~~pvl~~~~~~D~~~p~~~~~~~--~~~~~~~~~~~~~~~y~ga~H~F~~~~~ 208 (236)
T COG0412 135 EVKAAVAFYGGLIADDTAD----APKIKVPVLLHLAGEDPYIPAADVDAL--AAALEDAGVKVDLEIYPGAGHGFANDRA 208 (236)
T ss_pred CccEEEEecCCCCCCcccc----cccccCcEEEEecccCCCCChhHHHHH--HHHHHhcCCCeeEEEeCCCccccccCCC
Confidence 4667777777665433222 238999999999999999985544211 122222223578899999 89877542
Q ss_pred ----------HHHHHHHHHHhhhcC
Q 047403 88 ----------AQEVSNETLSFASFQ 102 (105)
Q Consensus 88 ----------p~~v~~~l~~fl~~~ 102 (105)
.+.-.+.+.+|+++.
T Consensus 209 ~~~~~y~~~aa~~a~~~~~~ff~~~ 233 (236)
T COG0412 209 DYHPGYDAAAAEDAWQRVLAFFKRL 233 (236)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHh
Confidence 235666777777654
No 86
>PLN02209 serine carboxypeptidase
Probab=96.24 E-value=0.014 Score=43.04 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=47.8
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhh------------------hhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHH
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITR------------------DVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETL 96 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~ 96 (105)
.+++|+..|+.|.+++....+..+.. ....+...+ +++..|-+ ||+++ .+|++..+++.
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmVp-~qP~~al~m~~ 429 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTAE-YLPEESSIMFQ 429 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCcC-cCHHHHHHHHH
Confidence 47999999999999886544322100 011122344 78888999 99996 69999999999
Q ss_pred HhhhcCC
Q 047403 97 SFASFQD 103 (105)
Q Consensus 97 ~fl~~~~ 103 (105)
+|+...+
T Consensus 430 ~fi~~~~ 436 (437)
T PLN02209 430 RWISGQP 436 (437)
T ss_pred HHHcCCC
Confidence 9998654
No 87
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=96.24 E-value=0.014 Score=43.00 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=47.3
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhh------------------hhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHH
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITR------------------DVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETL 96 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~ 96 (105)
.+++|+..|+.|.+++....+..++. ....+...+ +++..|-+ ||+++ .+|++..+++.
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp-~qP~~al~m~~ 425 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE-YRPNETFIMFQ 425 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC-CCHHHHHHHHH
Confidence 47999999999998886554322100 001111233 77888999 99997 69999999999
Q ss_pred HhhhcCC
Q 047403 97 SFASFQD 103 (105)
Q Consensus 97 ~fl~~~~ 103 (105)
+|+...+
T Consensus 426 ~Fi~~~~ 432 (433)
T PLN03016 426 RWISGQP 432 (433)
T ss_pred HHHcCCC
Confidence 9998765
No 88
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=96.12 E-value=0.019 Score=41.91 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=47.7
Q ss_pred CCcchhhhhhhcCCCHHHhhccCCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhc
Q 047403 10 GFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQER 87 (105)
Q Consensus 10 g~~~~~~~yr~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~ 87 (105)
|+.....+|+.....- ...+|++|+|+|.+.+|++++...+- ....+..|++-+.+-.- ||.-.+|.
T Consensus 301 gf~~~deYY~~aSs~~------~v~~I~VP~L~ina~DDPv~p~~~ip-----~~~~~~np~v~l~~T~~GGHlgfleg 368 (409)
T KOG1838|consen 301 GFKSVDEYYKKASSSN------YVDKIKVPLLCINAADDPVVPEEAIP-----IDDIKSNPNVLLVITSHGGHLGFLEG 368 (409)
T ss_pred CCCcHHHHHhhcchhh------hcccccccEEEEecCCCCCCCcccCC-----HHHHhcCCcEEEEEeCCCceeeeecc
Confidence 6777777777654321 12389999999999999999976653 34455578776665555 99888876
No 89
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=96.03 E-value=0.012 Score=43.57 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=48.4
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhhh------hhhhhc-------------CCCcceEEecC-CCCcchhcHHHHHHHHHH
Q 047403 38 IAMKFIVGDKDIGFESNGTREYITR------DVFKRY-------------IPNLEVVILDG-HHFIQQERAQEVSNETLS 97 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~~------~~~~~~-------------~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~ 97 (105)
.++++..|+.|.+++....+..++. ...+-| ..++++..|.| ||+++.++|+.-..++.+
T Consensus 364 ~rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~p~~al~m~~~ 443 (454)
T KOG1282|consen 364 YRVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDKPESALIMFQR 443 (454)
T ss_pred eEEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCCcHHHHHHHHH
Confidence 7999999999999986555432100 000011 12255678889 999999999999999999
Q ss_pred hhhcCCC
Q 047403 98 FASFQDI 104 (105)
Q Consensus 98 fl~~~~~ 104 (105)
|+...+.
T Consensus 444 fl~g~~l 450 (454)
T KOG1282|consen 444 FLNGQPL 450 (454)
T ss_pred HHcCCCC
Confidence 9997664
No 90
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=96.02 E-value=0.0084 Score=41.92 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=45.0
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcC
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
.+++|.++|-+..|.+.. ... ..+---..++++++. ||+++++.|..|+..+..|+.++
T Consensus 268 ~~p~~klLilAg~d~LDk-dLt--------iGQMQGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~Rn 327 (343)
T KOG2564|consen 268 GLPVPKLLILAGVDRLDK-DLT--------IGQMQGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIRN 327 (343)
T ss_pred CCCccceeEEecccccCc-cee--------eeeeccceeeeeecccCceeccCCcchHHHHHHHHHhhh
Confidence 667898998888887643 111 222123468899999 99999999999999999998754
No 91
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.90 E-value=0.0074 Score=43.69 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=58.8
Q ss_pred cCCcchhhhhhhcCCCHHHhhccCCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc-ceEEecC-CCCcchh
Q 047403 9 SGFTGAFNFYRAMDLNWELLAAREGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNL-EVVILDG-HHFIQQE 86 (105)
Q Consensus 9 ~g~~~~~~~yr~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~-gH~~~~e 86 (105)
..+..+.++|+......-....+....+++||-+-.+..|..-. +. ..++...||+ +...... |||.+.|
T Consensus 376 ~si~ss~r~y~e~~~~~~r~~~~~r~~v~vPtg~a~f~~el~~~-~~-------~~lrdky~nL~~~s~~~~GGhFaalE 447 (469)
T KOG2565|consen 376 NSITSSQRFYDESFNQRQRDLALDRVQVRVPTGCARFKFELWHT-SD-------DVLRDKYPNLTHSSYHPKGGHFAALE 447 (469)
T ss_pred CcchhhHHHHHHHHhHHHHHHHhhccccccchhhhccccchhhC-cH-------HHHhhhcccceeeEeccCCcchhhhh
Confidence 34556666666664332112223445888999888888887643 22 4467778885 4555555 9999999
Q ss_pred cHHHHHHHHHHhhhcC
Q 047403 87 RAQEVSNETLSFASFQ 102 (105)
Q Consensus 87 ~p~~v~~~l~~fl~~~ 102 (105)
.|+.+++-+.+|++..
T Consensus 448 ~p~~La~D~~~FV~~~ 463 (469)
T KOG2565|consen 448 DPKKLAQDFFSFVEKL 463 (469)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999999999753
No 92
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=95.80 E-value=0.013 Score=38.74 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=42.6
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
...++|+++|.|+.|..++.... -.+.+. ...+.+++++ +||.+-.- ..+.+.+.+||.
T Consensus 146 ~P~P~~~lvi~g~~Ddvv~l~~~------l~~~~~-~~~~~i~i~~a~HFF~gKl-~~l~~~i~~~l~ 205 (210)
T COG2945 146 APCPSPGLVIQGDADDVVDLVAV------LKWQES-IKITVITIPGADHFFHGKL-IELRDTIADFLE 205 (210)
T ss_pred cCCCCCceeEecChhhhhcHHHH------HHhhcC-CCCceEEecCCCceecccH-HHHHHHHHHHhh
Confidence 46688999999999987764332 222222 4578888999 99888654 458889999884
No 93
>PLN02442 S-formylglutathione hydrolase
Probab=95.77 E-value=0.035 Score=38.32 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=34.1
Q ss_pred cccccEEEEeeCCCCCCCCCC-chhhhhhhhhhhcCCCcceEEecC-CCCcc
Q 047403 35 KVTIAMKFIVGDKDIGFESNG-TREYITRDVFKRYIPNLEVVILDG-HHFIQ 84 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~ 84 (105)
..++|+++++|++|..++... ...+. +.+++...++++.++++ +|-.+
T Consensus 215 ~~~~pvli~~G~~D~~v~~~~~s~~~~--~~l~~~g~~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 215 DVSATILIDQGEADKFLKEQLLPENFE--EACKEAGAPVTLRLQPGYDHSYF 264 (283)
T ss_pred ccCCCEEEEECCCCccccccccHHHHH--HHHHHcCCCeEEEEeCCCCccHH
Confidence 468999999999998887421 22222 34455455688999999 99766
No 94
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=95.75 E-value=0.029 Score=44.09 Aligned_cols=66 Identities=9% Similarity=0.159 Sum_probs=41.4
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcc-hhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQ-QERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~-~e~p~~v~~~l~~fl~~ 101 (105)
.++++|+|+|+|..|..+++....+.+ +.+++.-...++.+.+++|... ...+.++.+.+.+|++.
T Consensus 452 ~kIkvPvLlIhGw~D~~V~~~~s~~ly--~aL~~~g~pkkL~l~~g~H~~~~~~~~~d~~e~~~~Wfd~ 518 (767)
T PRK05371 452 DKIKASVLVVHGLNDWNVKPKQVYQWW--DALPENGVPKKLFLHQGGHVYPNNWQSIDFRDTMNAWFTH 518 (767)
T ss_pred hCCCCCEEEEeeCCCCCCChHHHHHHH--HHHHhcCCCeEEEEeCCCccCCCchhHHHHHHHHHHHHHh
Confidence 379999999999999988743332111 2233222234554445599654 33566777888888764
No 95
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=95.74 E-value=0.0098 Score=40.31 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=45.0
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC--cceEEecC-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN--LEVVILDG-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
+.++|.|+|.|..|.++|+..+ +.+-..+|. -++..+++ .|.=-+ .-+-.-++|.+||.+..
T Consensus 219 ~~~~P~LFiSGlkDelVPP~~M------r~Ly~~c~S~~Krl~eFP~gtHNDT~-i~dGYfq~i~dFlaE~~ 283 (300)
T KOG4391|consen 219 QCRMPFLFISGLKDELVPPVMM------RQLYELCPSRTKRLAEFPDGTHNDTW-ICDGYFQAIEDFLAEVV 283 (300)
T ss_pred cccCceEEeecCccccCCcHHH------HHHHHhCchhhhhheeCCCCccCceE-EeccHHHHHHHHHHHhc
Confidence 7789999999999999997665 445566664 46888899 774332 23446778888887643
No 96
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=95.72 E-value=0.013 Score=41.37 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=35.0
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
++|+||+++-+|-.|..+|++.. --.-..++. -++.+++. ||....+. -.+...+||.+
T Consensus 259 ~ri~~pvl~~~gl~D~~cPP~t~------fA~yN~i~~~K~l~vyp~~~He~~~~~---~~~~~~~~l~~ 319 (320)
T PF05448_consen 259 RRIKCPVLFSVGLQDPVCPPSTQ------FAAYNAIPGPKELVVYPEYGHEYGPEF---QEDKQLNFLKE 319 (320)
T ss_dssp GG--SEEEEEEETT-SSS-HHHH------HHHHCC--SSEEEEEETT--SSTTHHH---HHHHHHHHHHH
T ss_pred HHcCCCEEEEEecCCCCCCchhH------HHHHhccCCCeeEEeccCcCCCchhhH---HHHHHHHHHhc
Confidence 48999999999999999996443 223334443 57888999 99665443 24555666654
No 97
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=95.70 E-value=0.008 Score=38.78 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=35.2
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhc
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQER 87 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~ 87 (105)
.+.+|+++|.+++|++++.... ..+++.. +++++.+++ ||+...+-
T Consensus 112 ~l~~~~~viaS~nDp~vp~~~a------~~~A~~l-~a~~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 112 PLPFPSIVIASDNDPYVPFERA------QRLAQRL-GAELIILGGGGHFNAASG 158 (171)
T ss_dssp HHHCCEEEEEETTBSSS-HHHH------HHHHHHH-T-EEEEETS-TTSSGGGT
T ss_pred ccCCCeEEEEcCCCCccCHHHH------HHHHHHc-CCCeEECCCCCCcccccC
Confidence 6778999999999999985443 5566655 788999999 99887664
No 98
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=95.69 E-value=0.0093 Score=43.62 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=38.6
Q ss_pred CCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecCCCCcchhc
Q 047403 32 EGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDGHHFIQQER 87 (105)
Q Consensus 32 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~gH~~~~e~ 87 (105)
++..|+||++++.|+.|.+.|+..+ ...++..++ .+++..++||.-..=+
T Consensus 325 dL~~It~pvy~~a~~~DhI~P~~Sv------~~g~~l~~g~~~f~l~~sGHIa~vVN 375 (445)
T COG3243 325 DLGDITCPVYNLAAEEDHIAPWSSV------YLGARLLGGEVTFVLSRSGHIAGVVN 375 (445)
T ss_pred chhhcccceEEEeecccccCCHHHH------HHHHHhcCCceEEEEecCceEEEEeC
Confidence 4569999999999999999997666 456677777 6666666699766444
No 99
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=95.62 E-value=0.01 Score=44.93 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=35.1
Q ss_pred cCCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCC-CcceEEecCCCCc
Q 047403 31 REGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIP-NLEVVILDGHHFI 83 (105)
Q Consensus 31 ~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~gH~~ 83 (105)
.++++|+||++++.|+.|.++|+... ..+.+.+. +.+++..++||.-
T Consensus 435 idL~~I~~Pvl~va~~~DHIvPw~s~------~~~~~l~gs~~~fvl~~gGHIg 482 (560)
T TIGR01839 435 IDLKKVKCDSFSVAGTNDHITPWDAV------YRSALLLGGKRRFVLSNSGHIQ 482 (560)
T ss_pred echhcCCCCeEEEecCcCCcCCHHHH------HHHHHHcCCCeEEEecCCCccc
Confidence 35679999999999999999997766 33444544 4676666669953
No 100
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.053 Score=37.86 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=47.3
Q ss_pred EEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcc-hhcHHHHHHHHHHhhhcC
Q 047403 40 MKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQ-QERAQEVSNETLSFASFQ 102 (105)
Q Consensus 40 ~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~-~e~p~~v~~~l~~fl~~~ 102 (105)
+.++.+++|.+++.... ..+.+..|++++..+++||... +-+-+.+..+|.+-|++.
T Consensus 309 ~ivv~A~~D~Yipr~gv------~~lQ~~WPg~eVr~~egGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGV------RSLQEIWPGCEVRYLEGGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred EEEEEecCCccccccCc------HHHHHhCCCCEEEEeecCceeeeehhchHHHHHHHHHHHhh
Confidence 57788899999986554 6788999999999999999876 667788888888887754
No 101
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=95.50 E-value=0.014 Score=42.60 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=47.2
Q ss_pred CCCccc-ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC---CC--cceEEecC-CCCcchh---cHHHHHHHHHHhhhc
Q 047403 32 EGTKVT-IAMKFIVGDKDIGFESNGTREYITRDVFKRYI---PN--LEVVILDG-HHFIQQE---RAQEVSNETLSFASF 101 (105)
Q Consensus 32 ~~~~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~i~~-gH~~~~e---~p~~v~~~l~~fl~~ 101 (105)
+.++|+ ||+|.|.|++|.++++... .-+...+ +. -+...+++ ||+-..- -++++...|.+||.+
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt------~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQT------KAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHh------HHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 355888 9999999999999997665 3344443 43 23555656 9987755 457899999999975
Q ss_pred C
Q 047403 102 Q 102 (105)
Q Consensus 102 ~ 102 (105)
+
T Consensus 406 ~ 406 (406)
T TIGR01849 406 N 406 (406)
T ss_pred C
Confidence 3
No 102
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=94.83 E-value=0.1 Score=34.22 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=43.2
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecCCCCcchh-cHHHHHHHHHHhh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDGHHFIQQE-RAQEVSNETLSFA 99 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~gH~~~~e-~p~~v~~~l~~fl 99 (105)
.+|.++.....|+......... ...+.+..++ +++..++|+|+.++. +..++++.|.++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~---~~~W~~~~~~~~~~~~v~G~H~~~l~~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 168 KVPITLFYALDDPLVSMDRLEE---ADRWWDYTSGDVEVHDVPGDHFSMLKPHVAEIAEKIAEWL 229 (229)
T ss_dssp SSEEEEEEECSSSSSSHHCGGH---HCHHHGCBSSSEEEEEESSETTGHHSTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccccchhhhh---HHHHHHhcCCCcEEEEEcCCCcEecchHHHHHHHHHhccC
Confidence 4678888898888765321110 1235555654 689999999999997 8889999998876
No 103
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=94.67 E-value=0.086 Score=35.32 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=42.9
Q ss_pred ccc-ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCC--CcceEEecC-CCCcchhcHH---HHHHHHHHhhhcC
Q 047403 35 KVT-IAMKFIVGDKDIGFESNGTREYITRDVFKRYIP--NLEVVILDG-HHFIQQERAQ---EVSNETLSFASFQ 102 (105)
Q Consensus 35 ~~~-~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~-gH~~~~e~p~---~v~~~l~~fl~~~ 102 (105)
.+. +|+|++.|.+|.+++..... .+-+... ..+...+++ +|......+. +....+.+|+.+.
T Consensus 229 ~i~~~P~l~~~G~~D~~vp~~~~~------~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 229 KISPRPVLLVHGERDEVVPLRDAE------DLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERH 297 (299)
T ss_pred hcCCcceEEEecCCCcccchhhhH------HHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHHHh
Confidence 444 89999999999999865543 2333333 356677788 9988864433 6778888887653
No 104
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=94.60 E-value=0.11 Score=37.66 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=44.0
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC-cceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN-LEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
++++|.++|.|..|.+..++.... .-..+|+ -.+..+|+ +|-.-. ..+.+.|..|+..
T Consensus 260 rL~~PK~ii~atgDeFf~pD~~~~------y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~ 319 (367)
T PF10142_consen 260 RLTMPKYIINATGDEFFVPDSSNF------YYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNR 319 (367)
T ss_pred hcCccEEEEecCCCceeccCchHH------HHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHH
Confidence 779999999999999888677643 3344565 46788999 998777 5667777777653
No 105
>PRK10162 acetyl esterase; Provisional
Probab=94.41 E-value=0.084 Score=37.05 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=42.1
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcc-----hhcHHHHHHHHHHhhhc
Q 047403 38 IAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQ-----QERAQEVSNETLSFASF 101 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~-----~e~p~~v~~~l~~fl~~ 101 (105)
-|+++++|+.|++.+ +...+ .+.+.+..-.+++..+++ .|-.. .+...+..+.+.+|+.+
T Consensus 249 Pp~~i~~g~~D~L~d--e~~~~--~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~ 314 (318)
T PRK10162 249 PPCFIAGAEFDPLLD--DSRLL--YQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTA 314 (318)
T ss_pred CCeEEEecCCCcCcC--hHHHH--HHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHH
Confidence 589999999999875 23222 255665555689999999 99654 23445677777778764
No 106
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=93.42 E-value=0.047 Score=38.42 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=10.1
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCC----cceEEecC-CCCcchhcHH----HHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPN----LEVVILDG-HHFIQQERAQ----EVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~-gH~~~~e~p~----~v~~~l~~fl~ 100 (105)
.++.+|+|++.+.+|.++|...-.+.+ .++++...+. ....+|+| +|.+-.+..+ .+.+.+.+||+
T Consensus 229 G~v~~plLvl~Sg~DEyvP~~vdk~~L-l~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 229 GKVSKPLLVLYSGKDEYVPPWVDKEAL-LERWKAATNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp GG--S-EEEEEE--TT------------------------------------------------------------
T ss_pred ccCCCceEEEecCCCceeccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 488899999999999998743321111 1222222221 12458999 9988755433 47777777764
No 107
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=92.33 E-value=0.65 Score=30.70 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=35.9
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHhhh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~ 100 (105)
..|+++|.|+++.-..++. +. .++++...++|||++-.+ .+.+++.|++-++
T Consensus 139 ~~~v~CiyG~~E~d~~cp~---------l~--~~~~~~i~lpGgHHfd~d-y~~La~~Il~~l~ 190 (192)
T PF06057_consen 139 PAPVQCIYGEDEDDSLCPS---------LR--QPGVEVIALPGGHHFDGD-YDALAKRILDALK 190 (192)
T ss_pred CCeEEEEEcCCCCCCcCcc---------cc--CCCcEEEEcCCCcCCCCC-HHHHHHHHHHHHh
Confidence 3699999998665332222 22 368899999999977655 6667777776654
No 108
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=91.94 E-value=0.32 Score=37.58 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=35.8
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-CCcceEEecC-CCCcchh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-PNLEVVILDG-HHFIQQE 86 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-gH~~~~e 86 (105)
.+..|+|||.|..|..+++..+ +.+++.+ ...++++|++ +|-+-.-
T Consensus 302 dmk~PVLFV~Gsnd~mcspn~M------E~vreKMqA~~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 302 DMKQPVLFVIGSNDHMCSPNSM------EEVREKMQAEVELHVIGGADHSMAIP 349 (784)
T ss_pred hcCCceEEEecCCcccCCHHHH------HHHHHHhhccceEEEecCCCccccCC
Confidence 7889999999999999986666 3444444 4578999999 9976543
No 109
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=91.78 E-value=0.49 Score=32.99 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=36.8
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-CCcceEEecC-CCCcc
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-PNLEVVILDG-HHFIQ 84 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-gH~~~ 84 (105)
..++|+++.+|..|.++|+....... +.+++.- -++++..+++ +|...
T Consensus 217 ~P~~Pv~i~~g~~D~vvP~~~~~~l~--~~~c~~G~a~V~~~~~~~~~H~~~ 266 (290)
T PF03583_consen 217 TPTVPVLIYQGTADEVVPPADTDALV--AKWCAAGGADVEYVRYPGGGHLGA 266 (290)
T ss_pred CCCCCEEEEecCCCCCCChHHHHHHH--HHHHHcCCCCEEEEecCCCChhhh
Confidence 55799999999999999977665443 4555555 5788888888 99765
No 110
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=91.17 E-value=0.56 Score=30.60 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=42.2
Q ss_pred CCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCc----------chhcHHHHHHHHHHhhh
Q 047403 32 EGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFI----------QQERAQEVSNETLSFAS 100 (105)
Q Consensus 32 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~----------~~e~p~~v~~~l~~fl~ 100 (105)
.+.-++.|||+..|..|.+-.-+.+. -....+..+++++++ .|-+ ..++=...+..+..|+.
T Consensus 137 HL~gl~tPtli~qGtrD~fGtr~~Va-------~y~ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~ 209 (213)
T COG3571 137 HLTGLKTPTLITQGTRDEFGTRDEVA-------GYALSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWAR 209 (213)
T ss_pred hccCCCCCeEEeecccccccCHHHHH-------hhhcCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 35578899999999999986533321 111235689999999 8843 34444566777777765
Q ss_pred c
Q 047403 101 F 101 (105)
Q Consensus 101 ~ 101 (105)
.
T Consensus 210 ~ 210 (213)
T COG3571 210 R 210 (213)
T ss_pred h
Confidence 4
No 111
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=91.06 E-value=0.21 Score=32.32 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.9
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcch
Q 047403 38 IAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQ 85 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~ 85 (105)
-|++++.|+.|.+++ ....+ .+.+++..-.+++.++++ +|-..|
T Consensus 167 Pp~~i~~g~~D~l~~--~~~~~--~~~L~~~gv~v~~~~~~g~~H~f~~ 211 (211)
T PF07859_consen 167 PPTLIIHGEDDVLVD--DSLRF--AEKLKKAGVDVELHVYPGMPHGFFM 211 (211)
T ss_dssp HEEEEEEETTSTTHH--HHHHH--HHHHHHTT-EEEEEEETTEETTGGG
T ss_pred CCeeeeccccccchH--HHHHH--HHHHHHCCCCEEEEEECCCeEEeeC
Confidence 489999999998875 22333 356666566689999999 997654
No 112
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=90.98 E-value=0.44 Score=32.63 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred ccccEEEEeeCCCCCCCCC-CchhhhhhhhhhhcCCCcceEEecC-CCCcc
Q 047403 36 VTIAMKFIVGDKDIGFESN-GTREYITRDVFKRYIPNLEVVILDG-HHFIQ 84 (105)
Q Consensus 36 ~~~P~l~i~g~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~ 84 (105)
...|+++++|+.|+.++.. ....+ .+.+++.--.+++..++| +|-..
T Consensus 210 ~~~plli~~G~~D~~v~~~~~~~~~--~~~l~~~g~~v~~~~~~g~~H~f~ 258 (275)
T TIGR02821 210 RHSTILIDQGTADQFLDEQLRPDAF--EQACRAAGQALTLRRQAGYDHSYY 258 (275)
T ss_pred cCCCeeEeecCCCcccCccccHHHH--HHHHHHcCCCeEEEEeCCCCccch
Confidence 4578999999999988852 22111 244555444578889999 99665
No 113
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=90.70 E-value=0.61 Score=34.32 Aligned_cols=60 Identities=8% Similarity=0.101 Sum_probs=37.1
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
.++.++|.|.+.|++|+++|.++. ..++....+-+...|+. . +++--| .-...+.+||++
T Consensus 348 ~rr~~~plL~i~~~~D~v~P~eD~------~lia~~s~~gk~~~~~~~~--~~~gy~-~al~~~~~Wl~~ 408 (411)
T PF06500_consen 348 GRRCPTPLLAINGEDDPVSPIEDS------RLIAESSTDGKALRIPSKP--LHMGYP-QALDEIYKWLED 408 (411)
T ss_dssp SS-BSS-EEEEEETT-SSS-HHHH------HHHHHTBTT-EEEEE-SSS--HHHHHH-HHHHHHHHHHHH
T ss_pred CCCCCcceEEeecCCCCCCCHHHH------HHHHhcCCCCceeecCCCc--cccchH-HHHHHHHHHHHH
Confidence 368899999999999999986554 44555555677777877 4 233333 566777788764
No 114
>PLN00021 chlorophyllase
Probab=89.81 E-value=1.2 Score=31.55 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=32.1
Q ss_pred cccccEEEEeeCCCC--------CCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcH
Q 047403 35 KVTIAMKFIVGDKDI--------GFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERA 88 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p 88 (105)
.+.+|+|+|.+..|. .+-+....+ .+-+...-+.....++++ ||+-.+|..
T Consensus 187 ~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~---~~f~~~~~~~~~~~~~~~~gH~~~~~~~ 246 (313)
T PLN00021 187 NLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNH---AEFFNECKAPAVHFVAKDYGHMDMLDDD 246 (313)
T ss_pred cCCCCeEEEecCCCcccccccccccCCCCCCH---HHHHHhcCCCeeeeeecCCCcceeecCC
Confidence 577999999998763 122233321 133444445677778888 999886654
No 115
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=89.47 E-value=1 Score=28.44 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=40.0
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-CCcceEEecCCCCcc-hhcHHHHHHHHHHhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-PNLEVVILDGHHFIQ-QERAQEVSNETLSFA 99 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~gH~~~-~e~p~~v~~~l~~fl 99 (105)
..+.+|+.++.|+.|......... ..+.+.. ...+...++++|+.+ .+++..+.+.|..|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~W~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~ 212 (212)
T smart00824 150 GPVAAPTLLVRASEPLAEWPDEDP-----DGWRAHWPLPHTVVDVPGDHFTMMEEHAAATARAVHDWL 212 (212)
T ss_pred CCCCCCEEEEeccCCCCCCCCCCc-----ccccCCCCCCceeEEccCchHHHHHHhHHHHHHHHHhhC
Confidence 367899999999988654111110 2233333 457888899999887 556777777776653
No 116
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=88.74 E-value=0.44 Score=32.26 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=44.1
Q ss_pred CCCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHH----HHHHHHHHhh
Q 047403 32 EGTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQ----EVSNETLSFA 99 (105)
Q Consensus 32 ~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~----~v~~~l~~fl 99 (105)
....+++|+|+++|+++...-.... +........+++..+++ +|+-.+|+-. .+...+..|+
T Consensus 202 ~~~~v~~~ilVv~~~~espklieQn------rdf~~q~~~a~~~~f~n~~hy~I~~~~~~~~s~~~~~~~~~~ 268 (270)
T KOG4627|consen 202 EYTDVTVWILVVAAEHESPKLIEQN------RDFADQLRKASFTLFKNYDHYDIIEETAIDDSDVSRFLRNIE 268 (270)
T ss_pred HhcCceeeeeEeeecccCcHHHHhh------hhHHHHhhhcceeecCCcchhhHHHHhccccchHHHHHHHHh
Confidence 3457889999999999864332333 44566667799999999 9999888643 4555555554
No 117
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=88.23 E-value=0.57 Score=32.24 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=46.7
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEe-----c-C-CCCcchhcH-HHHHHHHHHhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVIL-----D-G-HHFIQQERA-QEVSNETLSFA 99 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~-~-gH~~~~e~p-~~v~~~l~~fl 99 (105)
..+++|+.++...+|+.+|+... +.+.+..+|+.+... + . ||+-.--+| |.+.+.+++|+
T Consensus 213 aaVrtPi~~~~~~DD~w~P~As~------d~f~~~y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 213 AAVRTPITFSRALDDPWAPPASR------DAFASFYRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHhcCceeeeccCCCCcCCHHHH------HHHHHhhhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 47899999999999999996554 667777777655433 2 3 898888887 88888888886
No 118
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.05 E-value=1.5 Score=30.86 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=40.5
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc-ceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNL-EVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.++++|+|+..|--|.+++++-. -.+....+.. ++.+++- +| ++-|.-.++.+..|++
T Consensus 256 ~RiK~pvL~svgL~D~vcpPstq------FA~yN~l~~~K~i~iy~~~aH---e~~p~~~~~~~~~~l~ 315 (321)
T COG3458 256 ARIKVPVLMSVGLMDPVCPPSTQ------FAAYNALTTSKTIEIYPYFAH---EGGPGFQSRQQVHFLK 315 (321)
T ss_pred HhhccceEEeecccCCCCCChhh------HHHhhcccCCceEEEeecccc---ccCcchhHHHHHHHHH
Confidence 38999999999999999995443 3355556664 5677777 86 4555555555666665
No 119
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=86.89 E-value=1.1 Score=32.95 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=45.6
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEE---ecC-CCCcc---hhcHHHHHHHHHHhhhc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVI---LDG-HHFIQ---QERAQEVSNETLSFASF 101 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~-gH~~~---~e~p~~v~~~l~~fl~~ 101 (105)
...+.+|+.+.+|+.|.+..+.++ ..+....+++.... +++ +|+=. .+.+++|.+.|.+.++.
T Consensus 328 l~~i~~P~~l~~g~~D~l~~~~DV------~~~~~~~~~~~~~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~ 397 (403)
T KOG2624|consen 328 LTNIKVPTALYYGDNDWLADPEDV------LILLLVLPNSVIKYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRL 397 (403)
T ss_pred ccccccCEEEEecCCcccCCHHHH------HHHHHhcccccccccccCCCccceeeeeccCcHHHHHHHHHHHHHh
Confidence 347899999999999999887776 33444455543322 788 88533 66799999999888874
No 120
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=86.69 E-value=3.1 Score=27.25 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=35.9
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl 99 (105)
.-+.+++++.++.|.++++ +.......++...+.+| +|-+. +=++....|.+|+
T Consensus 132 ~~~~~~lvll~~~DEvLd~---------~~a~~~~~~~~~~i~~ggdH~f~--~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 132 TNPERYLVLLQTGDEVLDY---------REAVAKYRGCAQIIEEGGDHSFQ--DFEEYLPQIIAFL 186 (187)
T ss_pred CCCccEEEEEecCCcccCH---------HHHHHHhcCceEEEEeCCCCCCc--cHHHHHHHHHHhh
Confidence 3457899999999999874 22334455665566677 88554 3445666777775
No 121
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=85.75 E-value=1 Score=32.33 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=42.6
Q ss_pred cccc-EEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcH-----HHHHHHHHHhhhcC
Q 047403 36 VTIA-MKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERA-----QEVSNETLSFASFQ 102 (105)
Q Consensus 36 ~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p-----~~v~~~l~~fl~~~ 102 (105)
..+| +|++.++.|.+.+ ....+ .++|++..=.+++...++ .|-++.=.| .++.+.+.+|+...
T Consensus 266 ~~lp~tlv~~ag~D~L~D-~~~~Y---~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 266 LGLPPTLVVVAGYDVLRD-EGLAY---AEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred cCCCceEEEEeCchhhhh-hhHHH---HHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 3455 9999999999876 33221 366665444556667888 997764433 47778888888653
No 122
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=85.44 E-value=1.5 Score=29.26 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=42.6
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc--ceEEecC-CCCcchhcH---HHHHHHHHHhhhcC
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNL--EVVILDG-HHFIQQERA---QEVSNETLSFASFQ 102 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~-gH~~~~e~p---~~v~~~l~~fl~~~ 102 (105)
+++.|.|-|++|.++...+..- +..+..-+|.. .....++ ||+-.-.-+ ++|...|.+|+.++
T Consensus 134 ~taLlTVEGe~DDIsg~GQT~A---A~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 134 RTALLTVEGERDDISGPGQTHA---AHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQH 202 (202)
T ss_pred cceeEEeecCcccCCcchHHHH---HHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHhC
Confidence 4678889999999987544321 12333334542 3566789 999886654 68999999998753
No 123
>PRK10115 protease 2; Provisional
Probab=85.37 E-value=3.1 Score=32.56 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=32.3
Q ss_pred Cccccc-EEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEe---cC-CCCc
Q 047403 34 TKVTIA-MKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVIL---DG-HHFI 83 (105)
Q Consensus 34 ~~~~~P-~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~-gH~~ 83 (105)
.+++.| +|+++|.+|.-+++.....+. ..+++.....+...+ ++ ||.-
T Consensus 602 ~~~~~P~lLi~~g~~D~RV~~~~~~k~~--a~Lr~~~~~~~~vl~~~~~~~GHg~ 654 (686)
T PRK10115 602 TAQAYPHLLVTTGLHDSQVQYWEPAKWV--AKLRELKTDDHLLLLCTDMDSGHGG 654 (686)
T ss_pred CccCCCceeEEecCCCCCcCchHHHHHH--HHHHhcCCCCceEEEEecCCCCCCC
Confidence 467889 456699999998866654332 445544444566666 78 9983
No 124
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=84.37 E-value=0.86 Score=29.80 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=38.9
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcH---HHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERA---QEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p---~~v~~~l~~fl~ 100 (105)
.++.-|.+++..++|++++++.. ..+++.. ++.++.+.. ||+-..+-= .+....+.+|+.
T Consensus 114 ~~lpfps~vvaSrnDp~~~~~~a------~~~a~~w-gs~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s 177 (181)
T COG3545 114 EPLPFPSVVVASRNDPYVSYEHA------EDLANAW-GSALVDVGEGGHINAESGFGPWPEGYALLAQLLS 177 (181)
T ss_pred ccCCCceeEEEecCCCCCCHHHH------HHHHHhc-cHhheecccccccchhhcCCCcHHHHHHHHHHhh
Confidence 36778999999999999985443 4455544 455566777 996654421 234555555554
No 125
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=84.29 E-value=0.84 Score=33.06 Aligned_cols=54 Identities=22% Similarity=0.131 Sum_probs=41.0
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc--ceEEecC-CCCcchhcHHHH
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNL--EVVILDG-HHFIQQERAQEV 91 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~-gH~~~~e~p~~v 91 (105)
..+++.|++++.|..|.+.++.... ......+++. .+..+++ .|+..+|-.++.
T Consensus 247 l~~v~~P~~~~a~s~D~~aP~~~~~-----~~~f~~l~g~~k~~~~vp~a~h~sfl~~~~~~ 303 (365)
T COG4188 247 LVKVTDPVLLAAGSADGFAPPVTEQ-----IRPFGYLPGALKYLRLVPGATHFSFLELCKEG 303 (365)
T ss_pred ceeeecceeeecccccccCCccccc-----ccccccCCcchhheeecCCCccccccccCccc
Confidence 4588999999999999976643332 4455667887 5677888 999998877763
No 126
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=84.23 E-value=1.4 Score=31.00 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=41.0
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhh-------------------hhhhhhhcCCC--cceEEecC-CCCcchhcHHHHH
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYI-------------------TRDVFKRYIPN--LEVVILDG-HHFIQQERAQEVS 92 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~i~~-gH~~~~e~p~~v~ 92 (105)
+-++|++++.|.+|.++..+...+.. ..+.+.....+ ...+.+.. ||+.+=.+|+-++
T Consensus 210 ~~~ikvli~ygg~DhLIEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~A~lIA 289 (297)
T PF06342_consen 210 KKPIKVLIAYGGKDHLIEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFRADLIA 289 (297)
T ss_pred cCCCcEEEEEcCcchhhHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHHHHHHH
Confidence 44589999999999987533332210 00111111111 11345666 9999999999999
Q ss_pred HHHHHhhh
Q 047403 93 NETLSFAS 100 (105)
Q Consensus 93 ~~l~~fl~ 100 (105)
+.+...++
T Consensus 290 ~~i~~mfe 297 (297)
T PF06342_consen 290 EAIKKMFE 297 (297)
T ss_pred HHHHHhhC
Confidence 99887653
No 127
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=82.90 E-value=0.77 Score=34.92 Aligned_cols=26 Identities=4% Similarity=-0.102 Sum_probs=22.5
Q ss_pred cCCCcccccEEEEeeCCCCCCCCCCc
Q 047403 31 REGTKVTIAMKFIVGDKDIGFESNGT 56 (105)
Q Consensus 31 ~~~~~~~~P~l~i~g~~D~~~~~~~~ 56 (105)
.++++|+||+.++++..|.++|+...
T Consensus 291 ~DLr~Ir~Piivfas~gDnITPP~Qa 316 (581)
T PF11339_consen 291 VDLRNIRSPIIVFASYGDNITPPQQA 316 (581)
T ss_pred eehhhCCCCEEEEeccCCCCCChhHh
Confidence 35789999999999999999997654
No 128
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=80.30 E-value=3.8 Score=33.82 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=37.8
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcH--HHHHHHHH
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERA--QEVSNETL 96 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p--~~v~~~l~ 96 (105)
..+.+|++++.|..|........ ..+.+...+++...+++||+.++..+ ..++..|.
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~------~~W~~~~~~~~~~~v~g~H~~~~~~~~~~~~~~~l~ 1291 (1296)
T PRK10252 1233 VPFDGKATLFVAERTLQEGMSPE------QAWSPWIAELDVYRQDCAHVDIISPEAFEKIGPILR 1291 (1296)
T ss_pred CcccCceEEEEcCCCCcccCCcc------cchhhhcCCCEEEECCCCHHHHCCcHHHHHHHHHHH
Confidence 46779999999988865442222 33455556778888888999987555 34444443
No 129
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=79.15 E-value=3.7 Score=27.49 Aligned_cols=59 Identities=8% Similarity=-0.013 Sum_probs=39.8
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHH
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLS 97 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~ 97 (105)
..|.+..+|+.|+++|....+.. ...+......+++..+++ +|...-+.=+++..-|.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s--~~~l~~~~~~~~f~~y~g~~h~~~~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKS--AQFLKSLGVRVTFKPYPGLGHSTSPQELDDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHH--HHHHHHcCCceeeeecCCccccccHHHHHHHHHHHHH
Confidence 57899999999999985443211 123333333488999999 998877666665555443
No 130
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=76.93 E-value=2.8 Score=29.15 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC-CCcceEEecC-CCCcchhcHH
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI-PNLEVVILDG-HHFIQQERAQ 89 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-gH~~~~e~p~ 89 (105)
.+.+.+|++..++.+|..+....+. +.+.... +..++..++| +|-+. |+|.
T Consensus 191 ~k~l~iP~iaF~A~~D~WV~q~eV~-----~~~~~~~s~~~klysl~Gs~HdL~-enl~ 243 (294)
T PF02273_consen 191 MKRLSIPFIAFTANDDDWVKQSEVE-----ELLDNINSNKCKLYSLPGSSHDLG-ENLV 243 (294)
T ss_dssp HTT--S-EEEEEETT-TTS-HHHHH-----HHHTT-TT--EEEEEETT-SS-TT-SSHH
T ss_pred HhhCCCCEEEEEeCCCccccHHHHH-----HHHHhcCCCceeEEEecCccchhh-hChH
Confidence 3578999999999999988755552 2233222 3468899999 99654 5554
No 131
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=76.88 E-value=4.2 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=32.3
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQE 86 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e 86 (105)
--|++++.|+.|.+.+ .... + .+.+++..-.+++..+++ .|....-
T Consensus 245 lPP~~i~~a~~D~l~~-~~~~-~--a~~L~~agv~~~~~~~~g~~H~f~~~ 291 (312)
T COG0657 245 LPPTLIQTAEFDPLRD-EGEA-Y--AERLRAAGVPVELRVYPGMIHGFDLL 291 (312)
T ss_pred CCCEEEEecCCCcchh-HHHH-H--HHHHHHcCCeEEEEEeCCcceecccc
Confidence 3679999999999987 3321 1 355665555578899999 9966433
No 132
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=75.48 E-value=9.1 Score=28.54 Aligned_cols=55 Identities=16% Similarity=0.136 Sum_probs=37.8
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcc-----hhcHHHHHHHHHHhhh
Q 047403 38 IAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQ-----QERAQEVSNETLSFAS 100 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~-----~e~p~~v~~~l~~fl~ 100 (105)
-..|+|.|++|+-.- ..+ .+.+-..+..+.+.+| +|..- .++-++....|.+|..
T Consensus 352 ~rmlFVYG~nDPW~A-~~f-------~l~~g~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 352 PRMLFVYGENDPWSA-EPF-------RLGKGKRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CeEEEEeCCCCCccc-Ccc-------ccCCCCcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 457999999998754 222 1333345677788899 99644 4555677888888865
No 133
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=74.01 E-value=7.4 Score=28.77 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=42.6
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc-ceEEecC-CCCcchhcHHHHHHHHHHhhh
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNL-EVVILDG-HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~-gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.++..|..++-|..|.++.++.. .-.-..+|+. .+.++++ .|..--.--++...-++.+++
T Consensus 326 ~RLalpKyivnaSgDdff~pDsa------~lYyd~LPG~kaLrmvPN~~H~~~n~~i~esl~~flnrfq 388 (507)
T COG4287 326 LRLALPKYIVNASGDDFFVPDSA------NLYYDDLPGEKALRMVPNDPHNLINQFIKESLEPFLNRFQ 388 (507)
T ss_pred hhccccceeecccCCcccCCCcc------ceeeccCCCceeeeeCCCCcchhhHHHHHHHHHHHHHHHh
Confidence 47889999999998888775665 3344567885 5788899 998766555554444444444
No 134
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=72.64 E-value=9.6 Score=28.64 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=46.1
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCC-------C-cceEEecC-CCCcchh--cHHHHHHHHHHhhhcC
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIP-------N-LEVVILDG-HHFIQQE--RAQEVSNETLSFASFQ 102 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~i~~-gH~~~~e--~p~~v~~~l~~fl~~~ 102 (105)
....++.+|-.|+++++...-+++ +.+.+... + .++..+|| +|..--. .+-.+..+|.+|+++-
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY--~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~G 427 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYY--ERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVENG 427 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHH--HHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhCC
Confidence 467799999999999877655554 33444332 2 57899999 9976533 4557899999999854
No 135
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=70.77 E-value=6.3 Score=21.10 Aligned_cols=35 Identities=14% Similarity=0.383 Sum_probs=29.0
Q ss_pred cCCCcceEEecCCCCcchhcHHHHHHHHHHhhhcC
Q 047403 68 YIPNLEVVILDGHHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 68 ~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
..|+..+....|-+++..|.+++|.+.+.+|-+..
T Consensus 24 ~~PDTvItL~~G~k~vV~Es~~eVi~ki~~y~~~i 58 (60)
T PF06289_consen 24 ETPDTVITLTNGKKYVVKESVEEVIEKIIEYRRKI 58 (60)
T ss_pred EcCCeEEEEeCCCEEEEECCHHHHHHHHHHHHHhc
Confidence 47887777667788999999999999999987654
No 136
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=68.90 E-value=3.8 Score=30.30 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=31.6
Q ss_pred ccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcC--CCcce--EEecC-CCC---cchhcHHHHHHHHHHhhhcCC
Q 047403 36 VTIAMKFIVGDKDIGFESNGTREYITRDVFKRYI--PNLEV--VILDG-HHF---IQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 36 ~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~i~~-gH~---~~~e~p~~v~~~l~~fl~~~~ 103 (105)
-+.||++++|.-|.+-+ +.. ......+ .+... +-+|| |+- ..-+..+.+-+.+++||...|
T Consensus 188 ~p~P~VIv~gGlDs~qe-D~~------~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p 256 (411)
T PF06500_consen 188 KPYPTVIVCGGLDSLQE-DLY------RLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRP 256 (411)
T ss_dssp S-EEEEEEE--TTS-GG-GGH------HHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHST
T ss_pred CCCCEEEEeCCcchhHH-HHH------HHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCC
Confidence 35799999999998754 222 2222222 23333 34577 764 334455678889999998765
No 137
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=68.11 E-value=9.2 Score=20.76 Aligned_cols=36 Identities=17% Similarity=0.477 Sum_probs=31.3
Q ss_pred hcCCCcceEEecCCCCcchhcHHHHHHHHHHhhhcC
Q 047403 67 RYIPNLEVVILDGHHFIQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 67 ~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl~~~ 102 (105)
+.+|+.++..+.|--++..|.-++|.+.|.+|-...
T Consensus 23 e~~PDttItLinGkkyvVkEsveEVi~kI~~y~rkI 58 (67)
T COG1582 23 EAFPDTTITLINGKKYVVKESVEEVINKIIEYRRKI 58 (67)
T ss_pred hccCCcEEEEEcCcEEEEcccHHHHHHHHHHHHHHh
Confidence 348999999999988999999999999999987654
No 138
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=66.79 E-value=10 Score=26.49 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=34.6
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC--CCCcchh-cHHHHHHHHHH
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG--HHFIQQE-RAQEVSNETLS 97 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--gH~~~~e-~p~~v~~~l~~ 97 (105)
...+|+.++.|++- .+ +..+.++|+++.+.+.. |++.... .|+++.+.|.+
T Consensus 145 ~~gVPV~lVsGDd~-~~-----------~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~ 198 (270)
T cd08769 145 EFGVPVVLVAGDSE-LE-----------KEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELRE 198 (270)
T ss_pred hcCCCEEEEecCHH-HH-----------HHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHH
Confidence 77899999999652 21 44667789998888855 8766655 45555555443
No 139
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=66.46 E-value=10 Score=26.39 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=35.4
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC--CCCcchh-cHHHHHHHHHHh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG--HHFIQQE-RAQEVSNETLSF 98 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--gH~~~~e-~p~~v~~~l~~f 98 (105)
...+|+.++.|++- ++ +..+.++|+++.+.+.. |++.... .|+++.+.|.+=
T Consensus 144 ~~gVPV~lvsGDd~-~~-----------~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~~ 198 (265)
T cd00281 144 YYGVPVVMVAGDAE-VC-----------KEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREG 198 (265)
T ss_pred hcCCCEEEEecCHH-HH-----------HHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHHH
Confidence 77899999999543 21 33566789998888855 8766655 466555555543
No 140
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=61.84 E-value=8.7 Score=26.16 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.3
Q ss_pred CcccccEEEEeeCCCCCCC
Q 047403 34 TKVTIAMKFIVGDKDIGFE 52 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~ 52 (105)
.++++|+|++.|-.|..+.
T Consensus 225 ~~i~vP~l~v~Gw~D~~~~ 243 (272)
T PF02129_consen 225 DKIDVPVLIVGGWYDTLFL 243 (272)
T ss_dssp GG--SEEEEEEETTCSSTS
T ss_pred hhCCCCEEEecccCCcccc
Confidence 4899999999999995554
No 141
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=61.00 E-value=5.7 Score=26.73 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=23.9
Q ss_pred EEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcc
Q 047403 41 KFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQ 84 (105)
Q Consensus 41 l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~ 84 (105)
.++.|++|.++|+.... .-.. ....++.++++|++.
T Consensus 169 ~aiIg~~D~IFpp~nQ~-----~~W~---~~~~~~~~~~~Hy~F 204 (213)
T PF04301_consen 169 KAIIGKKDRIFPPENQK-----RAWQ---GRCTIVEIDAPHYPF 204 (213)
T ss_pred EEEEcCCCEEeCHHHHH-----HHHh---CcCcEEEecCCCcCc
Confidence 48899999999954421 2222 234566777799875
No 142
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.86 E-value=19 Score=24.86 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=32.3
Q ss_pred hhhhhcCCCcceEEecCCCCcchhcH--HHHHHHHHHhhhcCC
Q 047403 63 DVFKRYIPNLEVVILDGHHFIQQERA--QEVSNETLSFASFQD 103 (105)
Q Consensus 63 ~~~~~~~~~~~~~~i~~gH~~~~e~p--~~v~~~l~~fl~~~~ 103 (105)
..+..++.+...+.++++|+.+++.| +.+...|.+.+...+
T Consensus 211 ~~W~~~~~~~~~~~i~g~H~~ml~ep~~~~~~~~i~~~l~~~~ 253 (257)
T COG3319 211 AGWSGWIADLDIVRIDGTHFDMLKEPHVATVAPLILAALNAIT 253 (257)
T ss_pred CcHHHHhCCCCeeeccccHHHHhcchhhHHHHHHHHHHHhhcc
Confidence 45778888887777888999998887 478888888887554
No 143
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=60.41 E-value=21 Score=27.16 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=24.2
Q ss_pred ceEEecCCCCcchhcHHHHHHHHHHhhhc
Q 047403 73 EVVILDGHHFIQQERAQEVSNETLSFASF 101 (105)
Q Consensus 73 ~~~~i~~gH~~~~e~p~~v~~~l~~fl~~ 101 (105)
...++++||+++.++|+.....+..|+.-
T Consensus 462 ~~r~y~aGHMvp~d~P~~~~~~~~~~~~~ 490 (498)
T COG2939 462 FLRIYEAGHMVPYDRPESSLEMVNLWING 490 (498)
T ss_pred EEEEecCcceeecCChHHHHHHHHHHHhh
Confidence 34555669999999999999999988764
No 144
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=56.93 E-value=20 Score=25.05 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=35.7
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC--CCCcchh-cHHHHHHHHHHhh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG--HHFIQQE-RAQEVSNETLSFA 99 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--gH~~~~e-~p~~v~~~l~~fl 99 (105)
...+|+.++.|++- .+ +..+++.|+++.+.+.. |.+.... .|+++.+.|.+=.
T Consensus 145 ~~gVPV~lVsGDd~-~~-----------~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~a 200 (266)
T cd08663 145 EYGVPVVLVTGDDA-AC-----------AEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREAA 200 (266)
T ss_pred hcCCCEEEEecCHH-HH-----------HHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHHH
Confidence 77899999999432 21 33566789998888855 8666654 5666666665433
No 145
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=56.43 E-value=12 Score=19.86 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=11.8
Q ss_pred cchhcHHHHHHHHHHhhhcCC
Q 047403 83 IQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 83 ~~~e~p~~v~~~l~~fl~~~~ 103 (105)
+.+++-.-+..+|..||-+.+
T Consensus 22 P~WDQ~Rl~~aALa~FL~QnG 42 (57)
T PF10929_consen 22 PNWDQYRLFQAALAGFLLQNG 42 (57)
T ss_pred CCchHHHHHHHHHHHHHHHcC
Confidence 555555556666666655443
No 146
>PRK04940 hypothetical protein; Provisional
Probab=55.66 E-value=47 Score=21.77 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=35.6
Q ss_pred cccc--EEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCc-ceEEecCCCCcchhcHHHHHHHHHHhhh
Q 047403 36 VTIA--MKFIVGDKDIGFESNGTREYITRDVFKRYIPNL-EVVILDGHHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 36 ~~~P--~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gH~~~~e~p~~v~~~l~~fl~ 100 (105)
++-| .+++-.+.|..+++ +.+.+...+. +.++.+||++-...-. +....|.+|+.
T Consensus 121 ~~~p~r~~vllq~gDEvLDy---------r~a~~~y~~~y~~~v~~GGdH~f~~fe-~~l~~I~~F~~ 178 (180)
T PRK04940 121 EKNRDRCLVILSRNDEVLDS---------QRTAEELHPYYEIVWDEEQTHKFKNIS-PHLQRIKAFKT 178 (180)
T ss_pred hcCcccEEEEEeCCCcccCH---------HHHHHHhccCceEEEECCCCCCCCCHH-HHHHHHHHHHh
Confidence 4444 49999999988763 3455556676 8888888444443333 36666777764
No 147
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=54.50 E-value=21 Score=24.87 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=35.1
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC--CCCcchhcHHHHHHHHHHhh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG--HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--gH~~~~e~p~~v~~~l~~fl 99 (105)
...+|++++.|++- ++ +..+.++|+++.+.+.. |.-..--.|+++.+.|.+=.
T Consensus 145 ~~gVPV~lvsGD~~-~~-----------~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~ 199 (263)
T cd08770 145 YLGVPVVFVSGDAG-LC-----------AEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGV 199 (263)
T ss_pred hcCCCEEEEecCHH-HH-----------HHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHH
Confidence 77899999999543 21 33566789998888855 73222336777777666544
No 148
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=53.10 E-value=17 Score=25.07 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=38.6
Q ss_pred cccccEEEEeeC------CCCCCCCCCchhhhhhhhhhhcCCC----cceEEecC---CCCcchhcHHHHHHHHHHhhh
Q 047403 35 KVTIAMKFIVGD------KDIGFESNGTREYITRDVFKRYIPN----LEVVILDG---HHFIQQERAQEVSNETLSFAS 100 (105)
Q Consensus 35 ~~~~P~l~i~g~------~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~---gH~~~~e~p~~v~~~l~~fl~ 100 (105)
.-++.+|-|.|+ .|..++.... ..++..+.+ .+..+|.| .|--.-|+| +|.+.|.+||=
T Consensus 182 p~~i~VLnI~G~~~~g~~sDG~V~~~Ss------~sl~~L~~~~~~~Y~e~~v~G~~a~HS~LheN~-~V~~~I~~FLw 253 (255)
T PF06028_consen 182 PKNIQVLNIYGDLEDGSNSDGIVPNASS------LSLRYLLKNRAKSYQEKTVTGKDAQHSQLHENP-QVDKLIIQFLW 253 (255)
T ss_dssp TTT-EEEEEEEESBTTCSBTSSSBHHHH------CTHHHHCTTTSSEEEEEEEESGGGSCCGGGCCH-HHHHHHHHHHC
T ss_pred CCCeEEEEEecccCCCCCCCeEEeHHHH------HHHHHHhhcccCceEEEEEECCCCccccCCCCH-HHHHHHHHHhc
Confidence 335789999998 7777764332 334444433 45566654 577777777 58899999983
No 149
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=52.53 E-value=36 Score=27.26 Aligned_cols=63 Identities=13% Similarity=0.214 Sum_probs=42.7
Q ss_pred cccccE-EEEeeCCCCCCCCCCchhhhhhhhhhhc-CCCcceEEecC-CCCcchhcH-HHHHHHHHHhhh
Q 047403 35 KVTIAM-KFIVGDKDIGFESNGTREYITRDVFKRY-IPNLEVVILDG-HHFIQQERA-QEVSNETLSFAS 100 (105)
Q Consensus 35 ~~~~P~-l~i~g~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~-gH~~~~e~p-~~v~~~l~~fl~ 100 (105)
.++.|. |+|+|+.|.-++......+. +.+... ++ .+..++++ +|.+-.-.+ ..+...+..|+.
T Consensus 679 ~~~~~~~LliHGt~DdnVh~q~s~~~~--~aL~~~gv~-~~~~vypde~H~is~~~~~~~~~~~~~~~~~ 745 (755)
T KOG2100|consen 679 NIKTPKLLLIHGTEDDNVHFQQSAILI--KALQNAGVP-FRLLVYPDENHGISYVEVISHLYEKLDRFLR 745 (755)
T ss_pred hhccCCEEEEEcCCcCCcCHHHHHHHH--HHHHHCCCc-eEEEEeCCCCcccccccchHHHHHHHHHHHH
Confidence 555565 99999999887644432221 223322 34 78889999 998886443 678888888886
No 150
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=49.74 E-value=20 Score=23.35 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=17.2
Q ss_pred cccEEEEeeCCCCCCCCCCchhh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREY 59 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~ 59 (105)
..|++++.|.+|.++++...++.
T Consensus 168 ~p~~~i~hG~~D~vVp~~~~~~~ 190 (212)
T TIGR01840 168 TPIMSVVHGDADYTVLPGNADEI 190 (212)
T ss_pred CCeEEEEEcCCCceeCcchHHHH
Confidence 34577899999999997665433
No 151
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.43 E-value=15 Score=24.14 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=24.6
Q ss_pred EEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcc
Q 047403 41 KFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQ 84 (105)
Q Consensus 41 l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~ 84 (105)
-++.|++|.+.++.. + -+-+.+.+.+..|+++|++.
T Consensus 168 ka~v~skDkIFpp~n-q-------~ayw~~rc~v~ei~g~H~~F 203 (214)
T COG2830 168 KAYVGSKDKIFPPAN-Q-------HAYWNARCAVIEINGEHYLF 203 (214)
T ss_pred hhhccCCCcccCCcc-h-------hhhhccceeEEEecCcceEE
Confidence 356789999998543 2 23345667788888888653
No 152
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=46.37 E-value=53 Score=22.85 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=30.8
Q ss_pred cccccEEEEeeCCCC--------CCCCCCchhhhhhhhh-hhcCCCcceEEecC-CCCcchhcH
Q 047403 35 KVTIAMKFIVGDKDI--------GFESNGTREYITRDVF-KRYIPNLEVVILDG-HHFIQQERA 88 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~-gH~~~~e~p 88 (105)
+.++|+++|....+. -+-+...++ +++ .+.-+..-..++.+ ||+=+++..
T Consensus 152 ~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~----~~Ff~~~~~p~~~~v~~~~GH~d~LDd~ 211 (259)
T PF12740_consen 152 DFSMPALVIGTGLGGEPRNPLFPPCAPAGVNY----REFFDECKPPSWHFVAKDYGHMDFLDDD 211 (259)
T ss_pred CCCCCeEEEecccCcccccccCCCCCCCCCCH----HHHHHhcCCCEEEEEeCCCCchHhhcCC
Confidence 456999999888774 233344332 233 33333344556677 999888876
No 153
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.86 E-value=50 Score=23.27 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=43.5
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEe-cC-CCCcchhcHHHHHHHHHHhh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVIL-DG-HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~-gH~~~~e~p~~v~~~l~~fl 99 (105)
.+-..+..|..|..+| ..+. +.+++.+|....+.= ++ -|.....+.+..++++.+.+
T Consensus 242 ~d~l~Fyygt~DgW~p-~~~~-----d~~kdd~~eed~~Ldedki~HAFV~~~~q~ma~~v~d~~ 300 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVP-SHYY-----DYYKDDVPEEDLKLDEDKIPHAFVVKHAQYMANAVFDMI 300 (301)
T ss_pred CcEEEEEccCCCCCcc-hHHH-----HHHhhhcchhceeeccccCCcceeecccHHHHHHHHHhh
Confidence 4778999999999998 4443 667888886443332 66 99999999998888887755
No 154
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=39.32 E-value=75 Score=22.57 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=30.3
Q ss_pred cccccEEEEeeCCC-------CCCCCCCchhhhhhhhhhhcC-CCcceEEecC-CCCcchhc
Q 047403 35 KVTIAMKFIVGDKD-------IGFESNGTREYITRDVFKRYI-PNLEVVILDG-HHFIQQER 87 (105)
Q Consensus 35 ~~~~P~l~i~g~~D-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~-gH~~~~e~ 87 (105)
.+.+|+++|..... +.+.+..+++ +.+-..+ +-+-..+..+ ||+=+++.
T Consensus 178 ~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH----~eFf~eCk~p~~hfV~~dYGHmDmLDD 235 (307)
T PF07224_consen 178 DLDIPVLVIGTGLGPKRNPLFPPCAPDGVNH----EEFFNECKPPCAHFVAKDYGHMDMLDD 235 (307)
T ss_pred ccCCceEEEecCcCccccCCCCCCCCCCcCH----HHHHHhhcccceeeeeccccccccccc
Confidence 56799999988777 4455454442 2233333 3344455677 99888664
No 155
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=38.74 E-value=26 Score=24.42 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=31.9
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEec-C-CCCcch-hcHHHHHHHHHHh
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILD-G-HHFIQQ-ERAQEVSNETLSF 98 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~-gH~~~~-e~p~~v~~~l~~f 98 (105)
...+|+.++.|++-. . +..++++|+++.+.+. + |-+... -.|+++.+.|.+=
T Consensus 145 ~~GVPV~lVsGD~~l------~------~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~i~~~ 199 (265)
T PF04951_consen 145 YYGVPVVLVSGDDAL------C------EEAKELLPWIVTVAVKEGIGRYAAISLHPAEACERIREA 199 (265)
T ss_dssp HTT--EEEEEEEHHH------H------HHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHHHHHH
T ss_pred hcCCcEEEEeCcHHH------H------HHHHHhCCCceEEEEecccCCCccccCCHHHHHHHHHHH
Confidence 678999999995431 1 5578889998877774 4 775553 4666666666543
No 156
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=38.05 E-value=24 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.0
Q ss_pred cchhcHHHHHHHHHHhhhcC
Q 047403 83 IQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 83 ~~~e~p~~v~~~l~~fl~~~ 102 (105)
+..|+|++++++|..||.+.
T Consensus 522 la~e~PeevA~ilr~Wl~e~ 541 (542)
T PRK06007 522 LAKEDPEEVAQVLRTWLSED 541 (542)
T ss_pred HHHhCHHHHHHHHHHHhcCC
Confidence 45789999999999999753
No 157
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=36.62 E-value=1.5e+02 Score=20.73 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=18.2
Q ss_pred CCcccccEEEEeeCCCCCCCCCCc
Q 047403 33 GTKVTIAMKFIVGDKDIGFESNGT 56 (105)
Q Consensus 33 ~~~~~~P~l~i~g~~D~~~~~~~~ 56 (105)
.....+.++++.+.+|-+++ +..
T Consensus 221 gsta~~qiif~ms~rDEyv~-~~~ 243 (299)
T KOG4840|consen 221 GSTAGAQIIFVMSGRDEYVK-ADI 243 (299)
T ss_pred CCCCCceEEEEecCcccccC-cch
Confidence 34667899999999999998 444
No 158
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=34.14 E-value=29 Score=26.77 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=16.7
Q ss_pred cchhcHHHHHHHHHHhhhcC
Q 047403 83 IQQERAQEVSNETLSFASFQ 102 (105)
Q Consensus 83 ~~~e~p~~v~~~l~~fl~~~ 102 (105)
+..++|++++.+|..||.+.
T Consensus 535 ~v~~~Pee~A~llr~Wl~e~ 554 (555)
T TIGR00206 535 MAKEKPEDVAKLIRTWLLKD 554 (555)
T ss_pred HHHhCHHHHHHHHHHHhhcC
Confidence 34589999999999999763
No 159
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=33.57 E-value=28 Score=25.35 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=27.8
Q ss_pred hhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhh
Q 047403 65 FKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 65 ~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl 99 (105)
..+...|+.+..|.. ||+++-++|+.+...+..+-
T Consensus 376 y~ktyknl~f~wilraghmvp~Dnp~~a~hmlr~vt 411 (414)
T KOG1283|consen 376 YEKTYKNLSFFWILRAGHMVPADNPAAASHMLRHVT 411 (414)
T ss_pred hhhhhccceeEEeecccCcccCCCHHHHhhheeecc
Confidence 344566788888988 99999999999888776554
No 160
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=33.55 E-value=66 Score=25.48 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=29.0
Q ss_pred cc-cccEEEEeeCCCCCCCCCCchhhhhhhhhhhc----CCCcceEEecCCC
Q 047403 35 KV-TIAMKFIVGDKDIGFESNGTREYITRDVFKRY----IPNLEVVILDGHH 81 (105)
Q Consensus 35 ~~-~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~gH 81 (105)
++ ..|+++++|+.|.++|.....+-+ ..+-+. .+.+.+..|++||
T Consensus 552 ~L~GKPaIiVhGR~DaLlPvnh~Sr~Y--~~ln~~~eG~~s~lrYyeV~naq 601 (690)
T PF10605_consen 552 NLHGKPAIIVHGRSDALLPVNHTSRPY--LGLNRQVEGRASRLRYYEVTNAQ 601 (690)
T ss_pred CcCCCceEEEecccceecccCCCchHH--HHHhhhhcccccceeEEEecCCe
Confidence 55 689999999999998865543322 112221 2456777788844
No 161
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.54 E-value=50 Score=21.10 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=32.8
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHH
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETL 96 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~ 96 (105)
..++.++.|+.+..- .. .+.+.+..|++.++-..+|.+-..+.++ +.+.|.
T Consensus 46 ~~~v~llG~~~~~~~---~~-----~~~l~~~yp~l~i~g~~~g~~~~~~~~~-i~~~I~ 96 (171)
T cd06533 46 GLRVFLLGAKPEVLE---KA-----AERLRARYPGLKIVGYHHGYFGPEEEEE-IIERIN 96 (171)
T ss_pred CCeEEEECCCHHHHH---HH-----HHHHHHHCCCcEEEEecCCCCChhhHHH-HHHHHH
Confidence 467777766655442 22 1568888999998776667777766665 444443
No 162
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=32.85 E-value=48 Score=21.10 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=26.0
Q ss_pred CCcceEEecCC-CCcchhcH-HHHHHHHHHhhhc
Q 047403 70 PNLEVVILDGH-HFIQQERA-QEVSNETLSFASF 101 (105)
Q Consensus 70 ~~~~~~~i~~g-H~~~~e~p-~~v~~~l~~fl~~ 101 (105)
.+....+++|| |......+ ..+.+.+.+|.+.
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~ 98 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYAN 98 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHc
Confidence 36788999997 99998888 7788888877654
No 163
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=32.10 E-value=46 Score=22.40 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=17.5
Q ss_pred cccEEEEeeCCCCCCCCCCch
Q 047403 37 TIAMKFIVGDKDIGFESNGTR 57 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~ 57 (105)
..|+++++|+.|..+.+...+
T Consensus 169 ~~P~~v~hG~~D~tV~~~n~~ 189 (220)
T PF10503_consen 169 GYPRIVFHGTADTTVNPQNAD 189 (220)
T ss_pred CCCEEEEecCCCCccCcchHH
Confidence 479999999999998866653
No 164
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.48 E-value=54 Score=22.77 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=38.8
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSF 98 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~f 98 (105)
..++.++.|+.+..- .. ...+.+..|++.++-.-+|-+-..|. +.+.+.|.+.
T Consensus 108 ~~~vfllGgkp~V~~---~a-----~~~l~~~~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s 160 (253)
T COG1922 108 GKRVFLLGGKPGVAE---QA-----AAKLRAKYPGLKIVGSHDGYFDPEEE-EAIVERIAAS 160 (253)
T ss_pred CceEEEecCCHHHHH---HH-----HHHHHHHCCCceEEEecCCCCChhhH-HHHHHHHHhc
Confidence 477888888777652 23 26788889999988877788888777 6777776653
No 165
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=30.56 E-value=57 Score=14.14 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhcCC
Q 047403 89 QEVSNETLSFASFQD 103 (105)
Q Consensus 89 ~~v~~~l~~fl~~~~ 103 (105)
++++..|.++|...+
T Consensus 1 ~~Ln~lI~~YL~~~G 15 (27)
T PF08513_consen 1 EELNQLIYDYLVENG 15 (27)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHCC
Confidence 467888888887543
No 166
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.36 E-value=81 Score=22.99 Aligned_cols=65 Identities=11% Similarity=0.163 Sum_probs=47.7
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcc-hhcHHHHHHHHHHhhhc
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQ-QERAQEVSNETLSFASF 101 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~-~e~p~~v~~~l~~fl~~ 101 (105)
....+.+.+.+..|.+++....+++. .......-+++..-+.+ -|..+ ...|....+...+|+..
T Consensus 223 ~~~~~~ly~~s~~d~v~~~~~ie~f~--~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~ 289 (350)
T KOG2521|consen 223 ELPWNQLYLYSDNDDVLPADEIEKFI--ALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRS 289 (350)
T ss_pred cccccceeecCCccccccHHHHHHHH--HHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHh
Confidence 33678889999999999866665442 33344445566677777 99888 45899999999999874
No 167
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=26.94 E-value=1.9e+02 Score=19.51 Aligned_cols=60 Identities=7% Similarity=0.004 Sum_probs=44.2
Q ss_pred cccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhh
Q 047403 37 TIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 37 ~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl 99 (105)
.+|+|+|.-.-|-++++..+.- .+...+.+|.--+..+.- |-.-..+..+.+...+...-
T Consensus 71 ~~~vLvvFqgpdAYISP~WY~s---K~e~~~~VPTWNY~aVHayG~~~~~~D~~~~~~~~~~Lt 131 (209)
T COG2808 71 GQPVLVVFQGPDAYISPAWYPS---KRETPKVVPTWNYVAVHAYGTVRIIEDDEWLRELLARLT 131 (209)
T ss_pred CCeEEEEEeCCCcccCcccccc---cccCCCcCCCcceEEEEEecceeeeccHHHHHHHHHHHH
Confidence 5899999998998888666520 012344578888888988 99999999987777766554
No 168
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=26.30 E-value=69 Score=13.70 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=11.6
Q ss_pred cHHHHHHHHHHhhhcCC
Q 047403 87 RAQEVSNETLSFASFQD 103 (105)
Q Consensus 87 ~p~~v~~~l~~fl~~~~ 103 (105)
+..++..+|.+||...+
T Consensus 2 ~~~~l~~lI~~yL~~~g 18 (34)
T smart00667 2 SRSELNRLILEYLLRNG 18 (34)
T ss_pred cHHHHHHHHHHHHHHcC
Confidence 34567788888886543
No 169
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.30 E-value=83 Score=17.34 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=22.8
Q ss_pred ecCCCCcchhcHHHHHHHHHHhhhcCCC
Q 047403 77 LDGHHFIQQERAQEVSNETLSFASFQDI 104 (105)
Q Consensus 77 i~~gH~~~~e~p~~v~~~l~~fl~~~~~ 104 (105)
+-+|-.+.=|-|+++.+-|..|+++.|.
T Consensus 50 LVnGevV~Get~eeLv~NIY~~i~Enp~ 77 (78)
T COG4844 50 LVNGEVVEGETPEELVENIYTFIEENPM 77 (78)
T ss_pred HhcCceecCCCHHHHHHHHHHHHhccCC
Confidence 3456667778899999999999998874
No 170
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=26.08 E-value=1.2e+02 Score=22.12 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=23.6
Q ss_pred CcccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcH
Q 047403 34 TKVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERA 88 (105)
Q Consensus 34 ~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p 88 (105)
..++.|+|+|..+.-. .. .... . ...+....++..+.++.| +|..+-|-|
T Consensus 271 ~~i~~P~L~InSe~f~-~~-~~~~-~--~~~~~~~~~~~~~~ti~gt~H~s~sD~~ 321 (379)
T PF03403_consen 271 SKIPQPLLFINSESFQ-WW-ENIF-R--MKKVISNNKESRMLTIKGTAHLSFSDFP 321 (379)
T ss_dssp GG--S-EEEEEETTT---H-HHHH-H--HHTT--TTS-EEEEEETT--GGGGSGGG
T ss_pred cCCCCCEEEEECcccC-Ch-hhHH-H--HHHHhccCCCcEEEEECCCcCCCcchhh
Confidence 3788999999876532 11 1211 0 112222235567889999 996655543
No 171
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=25.94 E-value=42 Score=20.97 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=12.8
Q ss_pred HHHHHHHhhhcCCCC
Q 047403 91 VSNETLSFASFQDIE 105 (105)
Q Consensus 91 v~~~l~~fl~~~~~~ 105 (105)
...+|.+|++++|+|
T Consensus 102 Ck~ALl~F~KRHPNP 116 (140)
T PF10952_consen 102 CKKALLDFMKRHPNP 116 (140)
T ss_pred cHHHHHHHHHhCCCH
Confidence 567899999999985
No 172
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.27 E-value=83 Score=22.76 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=37.7
Q ss_pred cccccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 35 KVTIAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 35 ~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
..+.||++|.---=.+.++......+ .++++.++++-++.++. + + -+.+.+.+.+-|.+.+
T Consensus 185 d~~lpTi~iaEcvLvYM~pe~S~~Li--~w~~~~F~~a~fv~YEQi~---~---~D~Fg~vM~~nlk~r~ 246 (335)
T KOG2918|consen 185 DTNLPTIFIAECVLVYMEPEESANLI--KWAASKFENAHFVNYEQIN---P---NDRFGKVMLANLKRRG 246 (335)
T ss_pred CcCcceeehhhhhheeccHHHHHHHH--HHHHHhCCcccEEEEeccC---C---CChHHHHHHHHHHhcC
Confidence 35789998876544455544443333 66677788887777777 6 1 1346666666665443
No 173
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=23.63 E-value=70 Score=23.04 Aligned_cols=44 Identities=7% Similarity=0.196 Sum_probs=29.7
Q ss_pred ccEEEEe-eCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecC-CCCcchh
Q 047403 38 IAMKFIV-GDKDIGFESNGTREYITRDVFKRYIPNLEVVILDG-HHFIQQE 86 (105)
Q Consensus 38 ~P~l~i~-g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-gH~~~~e 86 (105)
.+.|++. |...+.++-..+ ...++....++.+++|+| |..+|--
T Consensus 270 ~~ll~~~~G~~~pciDlrrv-----sqeLa~l~~daDLVViEGMGRalhTN 315 (348)
T KOG4584|consen 270 GQLLVVQNGQDSPCIDLRRV-----SQELAYLSSDADLVVIEGMGRALHTN 315 (348)
T ss_pred cceEEeecCCCCceeeHHhh-----hHHHHHHhcCCCEEEEeccchhhhhh
Confidence 3555554 444455554444 366778888999999999 9877743
No 174
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=23.47 E-value=53 Score=19.80 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=14.9
Q ss_pred ecC-CCCcchhcHHHHHHHHHHhhhcCC
Q 047403 77 LDG-HHFIQQERAQEVSNETLSFASFQD 103 (105)
Q Consensus 77 i~~-gH~~~~e~p~~v~~~l~~fl~~~~ 103 (105)
+-+ ||+.|.| ++.|.+||...+
T Consensus 13 L~gTG~HcHqE-----A~tIAdwL~~~~ 35 (115)
T TIGR02508 13 LIGTGHHCHQE-----ANTIADWLHLKG 35 (115)
T ss_pred HHHccchHHHH-----HHHHHHHHhcCC
Confidence 456 9999887 456667776544
No 175
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=23.30 E-value=78 Score=20.86 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=17.5
Q ss_pred CcchhcHHHHHHHHHHhhhcCCC
Q 047403 82 FIQQERAQEVSNETLSFASFQDI 104 (105)
Q Consensus 82 ~~~~e~p~~v~~~l~~fl~~~~~ 104 (105)
-++.++|-.|++.|..||..+-|
T Consensus 110 ~llr~D~~~VkeeIK~fl~~h~I 132 (180)
T PF04814_consen 110 ELLRRDPWRVKEEIKAFLQQHNI 132 (180)
T ss_dssp HCTTS-HHHHHHHHHHHHHHCT-
T ss_pred HHHhhCHHHHHHHHHHHHHHcCC
Confidence 36667888999999999987765
No 176
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.23 E-value=1.1e+02 Score=19.41 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=23.6
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCC
Q 047403 38 IAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHF 82 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~ 82 (105)
.++.++.|+.+.. . .. ...+.+..|++.++-...|.+
T Consensus 49 ~~ifllG~~~~~~-~--~~-----~~~l~~~yP~l~ivg~~~g~f 85 (172)
T PF03808_consen 49 KRIFLLGGSEEVL-E--KA-----AANLRRRYPGLRIVGYHHGYF 85 (172)
T ss_pred CeEEEEeCCHHHH-H--HH-----HHHHHHHCCCeEEEEecCCCC
Confidence 4555555554433 2 22 267888899999887777766
No 177
>PRK13669 hypothetical protein; Provisional
Probab=22.68 E-value=90 Score=17.63 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=24.5
Q ss_pred EEecCCCCcchhcHHHHHHHHHHhhhcCCC
Q 047403 75 VILDGHHFIQQERAQEVSNETLSFASFQDI 104 (105)
Q Consensus 75 ~~i~~gH~~~~e~p~~v~~~l~~fl~~~~~ 104 (105)
..+=+|-.+.-+.|+++.+.|..+++++|.
T Consensus 48 FAlVng~~V~a~t~eeL~~kI~~~i~e~~~ 77 (78)
T PRK13669 48 FALVNGEVVEGETPEELVENIYAHLEENPM 77 (78)
T ss_pred eEEECCeEeecCCHHHHHHHHHHHHhhcCC
Confidence 344567778889999999999999998763
No 178
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=22.33 E-value=1.9e+02 Score=19.72 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=25.6
Q ss_pred hhhhhcCCCcceEEecC-CCCcchhc-HHHHHHHHH
Q 047403 63 DVFKRYIPNLEVVILDG-HHFIQQER-AQEVSNETL 96 (105)
Q Consensus 63 ~~~~~~~~~~~~~~i~~-gH~~~~e~-p~~v~~~l~ 96 (105)
+.+.+.+|+..+..+.+ .|++.=++ ++++.+.+.
T Consensus 15 ~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~ 50 (251)
T TIGR00067 15 KEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVL 50 (251)
T ss_pred HHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHH
Confidence 56788899999999999 99998554 455555443
No 179
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=22.27 E-value=2.7e+02 Score=21.14 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=30.0
Q ss_pred ccEEEEeeCCCCCCCCCCchhhhhhhhhhhcCCCcceEEecCCCCcchhcHHHHHHHHHHhh
Q 047403 38 IAMKFIVGDKDIGFESNGTREYITRDVFKRYIPNLEVVILDGHHFIQQERAQEVSNETLSFA 99 (105)
Q Consensus 38 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gH~~~~e~p~~v~~~l~~fl 99 (105)
.-+..|.|.++.=..++.. . ..+.+.+.++|||++- ++-+.+++.|++=+
T Consensus 397 ~~v~CiYG~~e~d~~Cp~l---------~--~~~~~~v~lpGgHHFd-~dy~~la~~il~~~ 446 (456)
T COG3946 397 ARVQCIYGQEEKDTACPSL---------K--AKGVDTVKLPGGHHFD-GDYEKLAKAILQGM 446 (456)
T ss_pred ceeEEEecCccccccCCcc---------h--hhcceeEecCCCcccC-ccHHHHHHHHHHHH
Confidence 4577888865532212222 1 2456778899998765 45666777776654
No 180
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=21.85 E-value=59 Score=20.04 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCCcchhcHHHHHHHHHHhhhcCCC
Q 047403 80 HHFIQQERAQEVSNETLSFASFQDI 104 (105)
Q Consensus 80 gH~~~~e~p~~v~~~l~~fl~~~~~ 104 (105)
-||+..++|+++++.|...-+..|.
T Consensus 103 ~~~L~~~r~~~f~~yL~~l~~~~pl 127 (128)
T PF07607_consen 103 VHFLMETRPEEFARYLRELSQRKPL 127 (128)
T ss_pred HHHHHHcCHHHHHHHHHHHhcCCCC
Confidence 3899999999999988877666654
No 181
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.81 E-value=88 Score=17.60 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=23.9
Q ss_pred EecCCCCcchhcHHHHHHHHHHhhhcCCC
Q 047403 76 ILDGHHFIQQERAQEVSNETLSFASFQDI 104 (105)
Q Consensus 76 ~i~~gH~~~~e~p~~v~~~l~~fl~~~~~ 104 (105)
.+=+|-.+.-+.|+++.+.|.+++++.|.
T Consensus 49 AlVnG~~V~A~t~eeL~~kI~~~i~e~~~ 77 (78)
T PF07293_consen 49 ALVNGEIVAAETAEELLEKIKEKIEENPM 77 (78)
T ss_pred EEECCEEEecCCHHHHHHHHHHHHhcccC
Confidence 34447788899999999999999998764
No 182
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=20.98 E-value=89 Score=14.10 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=6.6
Q ss_pred EEEEeeCCC
Q 047403 40 MKFIVGDKD 48 (105)
Q Consensus 40 ~l~i~g~~D 48 (105)
.+++||++.
T Consensus 20 slVVWGRnG 28 (29)
T PRK14747 20 AMVVWGRNG 28 (29)
T ss_pred eEEEEecCC
Confidence 488898764
No 183
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=20.78 E-value=1e+02 Score=17.93 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=20.3
Q ss_pred hhhcCCC-cceEEecCCCCcchhcHHHHHHHHH
Q 047403 65 FKRYIPN-LEVVILDGHHFIQQERAQEVSNETL 96 (105)
Q Consensus 65 ~~~~~~~-~~~~~i~~gH~~~~e~p~~v~~~l~ 96 (105)
-..|.|+ .+...+|.+|+--.| +.++.+.|+
T Consensus 61 ~~~W~pDPvTGyyrPen~~~EiD-~AeLR~~lL 92 (93)
T PF03242_consen 61 KSSWMPDPVTGYYRPENHFGEID-AAELRAKLL 92 (93)
T ss_pred ccccccCCCCccccCCCCCCCCC-HHHHHHHHh
Confidence 3457787 577777778866655 555666554
No 184
>PRK00865 glutamate racemase; Provisional
Probab=20.31 E-value=2.2e+02 Score=19.43 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=25.4
Q ss_pred hhhhhcCCCcceEEecC-CCCcchhcH-HHHHHHH
Q 047403 63 DVFKRYIPNLEVVILDG-HHFIQQERA-QEVSNET 95 (105)
Q Consensus 63 ~~~~~~~~~~~~~~i~~-gH~~~~e~p-~~v~~~l 95 (105)
+.+.+.+|+..+..+.+ .|++.=+++ +++.+.+
T Consensus 22 ~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~ 56 (261)
T PRK00865 22 REIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERT 56 (261)
T ss_pred HHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHH
Confidence 66888899999999999 999996654 4444443
Done!