BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047404
(291 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJQ8|UBAC2_CHICK Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 60/341 (17%)
Query: 4 GPSGFNNAPVTRAFVIA----CALFTVFFGIQGRFNKLGLSYQDIFQNFRLWRLIVSGFA 59
G +G AP++++ ++ L T+ F +F L Q I ++F++WRL+
Sbjct: 6 GSNGLYKAPLSKSLLLVPSAISILLTLLFQHYQKFFAYNL--QAIKEDFQIWRLVCGRVI 63
Query: 60 FSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFLFEVLTLA----LLKDPAM 115
+ L+Y FR+FER+ GS K+S F+L + T+S LF++L + +
Sbjct: 64 CLDLKDTFCSSLLIYNFRIFERRYGSRKFSSFLLGAWTLSALFDLLLVEAAQYVFGITIN 123
Query: 116 KLTSGPYGLIFASFVPFYFDIPVSTRFRVFGV-HFSDKSFIYLAGLQLLISSLNRSLLPG 174
L SG G +FA FVPFY IP +V G ++K+ +Y+ GLQLL S +L
Sbjct: 124 SLPSGFLGPVFALFVPFYCSIPRVQVTQVLGYFSITNKTLVYILGLQLLTSGSYIWIL-A 182
Query: 175 MCGILAGSLYRPNFFRI-RKAKFPEFITSFFSRLSLPSMGN-PPAAPSRNVLGSIPSHAG 232
+ G+++G Y + ++ R P ++ FS P + P R +G+
Sbjct: 183 LSGLISGICYNSSILKVHRILCVPSWVAKIFSWTLEPIFSSAEPTNEIRVGMGATVDIQR 242
Query: 233 RQ----------------------------------------AESNYPLPVPSTIEPP-- 250
+Q NY PS + P
Sbjct: 243 QQRMELLDRQIMMSQVAQMRRQRQQQGGMINWNRLFPPLRHRHNENYQDHHPSDQDTPPP 302
Query: 251 ----EDSIAMLVSMGFDRNSARQALVQARNDINAATNILLE 287
E+ +A L+ MGF R A +AL + ND+N ATN LL+
Sbjct: 303 TEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 343
>sp|Q4R910|UBAC2_MACFA Ubiquitin-associated domain-containing protein 2 OS=Macaca
fascicularis GN=UBAC2 PE=2 SV=1
Length = 345
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 130/299 (43%), Gaps = 63/299 (21%)
Query: 47 NFRLWRLIVSGFAFSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFLFEVLT 106
+F++WRLI + L+Y FR+FER+ GS K++ F+L S +S LF+ L
Sbjct: 51 DFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFLL 110
Query: 107 LALLK-----DPAMKLTSGPYGLIFASFVPFYFDIPVSTRFRVFG-VHFSDKSFIYLAGL 160
+ ++ A L SG +FA FVPFY IP ++ G + ++K+ IY+ GL
Sbjct: 111 VEAMQYFFGITAASNLPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGL 170
Query: 161 QLLISSLNRSLLPGMCGILAGSLYRPNFFRIRKA-KFPEFITSFFSRLSLPSM-GNPPAA 218
QL S + + + G+++G Y F++ + P ++ FFS P + P +
Sbjct: 171 QLFTSG-SYIWIVAISGLMSGLCYNSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTS 229
Query: 219 PSRNVLGS--------------------------------------------------IP 228
+R +G+ +
Sbjct: 230 EARIGMGATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVN 289
Query: 229 SHAGRQAESNYPLPVPSTIEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLE 287
GRQ+E P P +E E+ +A L+ MGF R A +AL + ND+N ATN LL+
Sbjct: 290 YQGGRQSEPAAPPP----LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 344
>sp|Q8NBM4|UBAC2_HUMAN Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 64/299 (21%)
Query: 47 NFRLWRLIVSGFAFSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFLFEVLT 106
+F++WRLI + L+Y FR+FER+ GS K++ F+L S +S LF+ L
Sbjct: 51 DFQIWRLICGRIICLDLKDTFCSSLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFLL 110
Query: 107 LALLK-----DPAMKLTSGPYGLIFASFVPFYFDIPVSTRFRVFG-VHFSDKSFIYLAGL 160
+ ++ A L SG +FA FVPFY IP ++ G + ++K+ IY+ GL
Sbjct: 111 IEAMQYFFGITAASNLPSGFLAPVFALFVPFYCSIPRVQVAQILGPLSITNKTLIYILGL 170
Query: 161 QLLISSLNRSLLPGMCGILAGSLYRPNFFRIRKA-KFPEFITSFFSRLSLPSM-GNPPAA 218
QL S + + + G+++G Y F++ + P ++ FFS P + P +
Sbjct: 171 QLFTSG-SYIWIVAISGLMSGLCYDSKMFQVHQVLCIPSWMAKFFSWTLEPIFSSSEPTS 229
Query: 219 PSRNVLGS--------------------------------------------------IP 228
+R +G+ +
Sbjct: 230 EARIGMGATLDIQRQQRMELLDRQLMFSQFAQGRRQRQQQGGMINWNRLFPPLRQRQNVN 289
Query: 229 SHAGRQAESNYPLPVPSTIEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLE 287
GRQ+E P +E E+ +A L+ MGF R A +AL + ND+N ATN LL+
Sbjct: 290 YQGGRQSE-----PAAPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 343
>sp|Q8R1K1|UBAC2_MOUSE Ubiquitin-associated domain-containing protein 2 OS=Mus musculus
GN=Ubac2 PE=2 SV=1
Length = 345
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 140/352 (39%), Gaps = 81/352 (23%)
Query: 4 GPSGFNNAPVTRAFVIA--------------CALFTVFFGIQGRFNKLGLSYQDIFQNFR 49
G SG AP++++ ++ C F V+ + + +
Sbjct: 6 GSSGLYKAPLSKSLLLVPSALSLLLTLLLPHCQKFFVY------------DLHAVKHDLQ 53
Query: 50 LWRLIVSGFAFSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFLF-----EV 104
+WRLI + L+Y FR+FER+ GS K++ F+L S +S LF E
Sbjct: 54 IWRLICGRIICLDLKDAFCSGLLIYNFRIFERRYGSRKFASFLLGSWVLSALFDFILVEA 113
Query: 105 LTLALLKDPAMKLTSGPYGLIFASFVPFYFDIPVSTRFRVFG-VHFSDKSFIYLAGLQLL 163
+ +L A L SG +FA FVPF+ IP ++ G + ++K+ IY+ GLQL
Sbjct: 114 VQYSLGVTVASNLPSGFLAPVFALFVPFHCSIPRVQVAQILGPLSITNKTLIYILGLQLF 173
Query: 164 ISSLNRSLLPGMCGILAGSLYRPNFFRIRKA-KFPEFITSFFSRLSLPSM-GNPPAAPSR 221
S + + M G+++G Y ++ + + P + FFS P + P + +R
Sbjct: 174 TSG-SYIWIVAMSGLISGMCYDRKVLQVHQVLRIPGRMAEFFSWALEPIFSSSEPTSEAR 232
Query: 222 NVLGSIPSHAGRQAESNY------------------------------PLPVPSTIE--- 248
+G+ +Q PL I
Sbjct: 233 VGMGATVDIQRQQRMEQLDRQLMLSQFAQVRRQRQQQGGMINWNRLFPPLRQRRNINYQD 292
Query: 249 ---------PP----EDSIAMLVSMGFDRNSARQALVQARNDINAATNILLE 287
PP E+ +A L+ MGF R A +AL + ND+N ATN LL+
Sbjct: 293 GPRSEQRASPPLEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQ 344
>sp|Q9UTK7|DSC2_SCHPO DSC E3 ubiquitin ligase complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dsc2 PE=1 SV=1
Length = 372
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 44 IFQNFRLWRLIVSGFAFSSAPELMFGLYLLYYFRVFERQIGSNKYSVFILF----SITVS 99
+ +++ WR+++ F + ++ E+ L+++Y R ER +GS++++ F ++ + V+
Sbjct: 45 LLSHYQYWRILLWQFIYWNSTEVFQALFIIYQARDVERLLGSHRFASFCVYMFILGMFVT 104
Query: 100 FLFEVLTLALLKDPAMKLTSGPYGLIFASFVPFYFDIPVSTRFRVFGVHFSDKSFIYLAG 159
+F L L K+ + GP LIFA +Y+ +P + R+F + F+DK + +
Sbjct: 105 PIFSFLYSLLFKNLDY-IQPGPTFLIFAILYQYYYIVPSTVFVRLFNIKFTDKFQMVIPM 163
Query: 160 LQLLISSLNRSLLPGMCGILAGSLYR 185
+ L S + + G G Y
Sbjct: 164 IGLAFSHFPSTFINAFLGWTMGMFYH 189
>sp|Q10255|YD27_SCHPO Uncharacterized protein C56F8.07 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC56F8.07 PE=4 SV=2
Length = 507
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 216 PAAPSRNVLGSIPSHAGRQAESNYPLPVPSTIEPPED-----SIAMLVSMGFDRNSARQA 270
P S LG+ S A S+ P PS + PP D IA LVSMGFD A QA
Sbjct: 435 PNPQSGTRLGTKESVAPNNEGSSNP---PSLVNPPTDPGLNSKIAQLVSMGFDPLEAAQA 491
Query: 271 LVQARNDINAATNILL 286
L A D++ A + LL
Sbjct: 492 LDAANGDLDVAASFLL 507
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 204 FSRLSLPSMGNPPAAPSRNVLGSIPSHAGRQAESNYPLPVPSTIEPPEDSIAMLVSMGFD 263
S ++ ++ + AP N +P GR A S E+ I LV+MGFD
Sbjct: 331 LSDATVNTVADSRQAPIANA-AVLPQSQGRVAAS-------------EEQIQKLVAMGFD 376
Query: 264 RNSARQALVQARNDINAATNILLEAQ 289
R AL A +D+ A IL+ Q
Sbjct: 377 RTQVEVALAAADDDLTVAVEILMSQQ 402
>sp|Q10256|MUD1_SCHPO UBA domain-containing protein mud1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mud1 PE=1 SV=1
Length = 332
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 216 PAAPSRNVLGSIPSHAGRQAESNYPLPVPSTIEPPED-----SIAMLVSMGFDRNSARQA 270
P S LG+ S A S+ P PS + PP D IA LVSMGFD A QA
Sbjct: 260 PNPQSGTRLGTKESVAPNNEGSSNP---PSLVNPPTDPGLNSKIAQLVSMGFDPLEAAQA 316
Query: 271 LVQARNDINAATNILL 286
L A D++ A + LL
Sbjct: 317 LDAANGDLDVAASFLL 332
>sp|Q4G2J6|DER11_MAIZE Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2
Length = 243
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 47/236 (19%)
Query: 12 PVTRAFVIACALFTVFFGIQGRFNK-LGLSYQDIFQNFRLWRLIVSGFAFSSAPELMFGL 70
P+++A+ C TV +Q L L Y +F+ F +WRL+ S F F + + FG+
Sbjct: 13 PISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTS-FFFLAPFSMKFGI 71
Query: 71 YLLYYFR---VFERQIGSNKYSVFILFSITVSFLFEVLTLALLKDPAMKLTSGPYGLIFA 127
LL R + E+ + + F+ I F ++L +L I
Sbjct: 72 RLLMIARYGVMLEKGAFDKRTADFLWMMI-----FGAISLLVLS-------------IIP 113
Query: 128 SFVPFYFDIPV-------------STRFRVFGVHFSDKSFIYLAGLQLLISSLNRSLLPG 174
F F+ IP+ + + ++G+ +SF + LL SL+PG
Sbjct: 114 LFNSFFLGIPMVSMLLYVWSRENPNAQINIYGL-VQLRSFYLPWAMLLLDVIFGSSLMPG 172
Query: 175 MCGILAGSLYRPNFFRIRK--------AKFPEFITSFFSRLSLPSMGNPPAAPSRN 222
+ GI+ G LY FF + K P+++ +R + N P P N
Sbjct: 173 LLGIMVGHLYY--FFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVRPPAN 226
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 236 ESNYPLP-VPSTI----EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
ES+ P P +P+T +PPE+SI++L SMGF R+ QAL + N++ A + +
Sbjct: 693 ESDLPSPSLPTTSALDNQPPEESISILTSMGFPRHHTIQALKASNNNLERALDWI 747
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
+PPE+ +A++ SMGF RN A QAL N++ A + +
Sbjct: 727 QPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWI 764
>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis
GN=usp13 PE=3 SV=2
Length = 846
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
+PPE+ +A++ SMGF RN A QAL N++ A + +
Sbjct: 708 QPPEEIVALICSMGFPRNHALQALRATNNNLERALDWM 745
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
+PPE+++A++ SMGF RN A QAL +++ A + +
Sbjct: 727 QPPEETVAIITSMGFHRNQAIQALRATNSNLERALDWI 764
>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13
PE=2 SV=1
Length = 858
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
+PPE+ +A++ SMGF RN A QAL +++ A + +
Sbjct: 722 QPPEEIVAIITSMGFQRNQAVQALQATNHNLERALDWI 759
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
PPED + +VSMGF R+ A +AL N + A + +
Sbjct: 723 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWI 759
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
PPED + +VSMGF R+ A +AL N + A + +
Sbjct: 723 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWI 759
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNIL 285
PPED + +VSMGF R+ A +AL N + A + +
Sbjct: 723 PPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWI 759
>sp|Q6P1U3|TDRD3_XENTR Tudor domain-containing protein 3 OS=Xenopus tropicalis GN=tdrd3
PE=2 SV=2
Length = 710
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
E ++ + MGF +++ARQAL+ N++ AA N LL
Sbjct: 253 EKALRHITEMGFSKDAARQALMDHSNNVEAALNSLL 288
>sp|Q66HC1|TDRD3_RAT Tudor domain-containing protein 3 OS=Rattus norvegicus GN=Tdrd3
PE=2 SV=1
Length = 651
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288
E ++ + MGF + ++RQAL+ N++ AA N+LL +
Sbjct: 196 EKALKHITEMGFSKEASRQALMDNANNLEAALNVLLNS 233
>sp|Q08232|YO073_YEAST Uncharacterized membrane protein YOL073C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YOL073C PE=1
SV=1
Length = 322
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 5 PSGFNNAPVTRAFVIACALFTVFFGIQGRFNKLGLSYQDIFQNF-RLWRLIVSGFAFSSA 63
P G PVT+ +I + + I + L Y Q + + +RL++ F +
Sbjct: 6 PVGLTAMPVTKLAMITTLVVPLVASIASYKHIFLLQYDPFLQTYHQYYRLLIFQFCAINE 65
Query: 64 PELMFGLYLLYYFRVFERQIGSNKYSVFILFSITVSFL 101
+ + + Y FR ER +GS+KY I+ S + L
Sbjct: 66 SDTVILALIWYLFRHLERLLGSHKYLTLIVLSWAYTTL 103
>sp|Q91W18|TDRD3_MOUSE Tudor domain-containing protein 3 OS=Mus musculus GN=Tdrd3 PE=1
SV=4
Length = 743
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
E ++ + MGF + ++RQAL+ N++ AA N+LL
Sbjct: 289 EKALKHITEMGFSKEASRQALMDNANNLEAALNVLL 324
>sp|Q9H7E2|TDRD3_HUMAN Tudor domain-containing protein 3 OS=Homo sapiens GN=TDRD3 PE=1
SV=1
Length = 651
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
E ++ + MGF + ++RQAL+ N++ AA N+LL
Sbjct: 196 EKALKHITEMGFSKEASRQALMDNGNNLEAALNVLL 231
>sp|Q6NRP6|TDRD3_XENLA Tudor domain-containing protein 3 OS=Xenopus laevis GN=tdrd3 PE=2
SV=1
Length = 650
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
E ++ + MGF +++ARQAL+ N++ AA N LL
Sbjct: 195 EKALRHITEMGFCKDAARQALMDHSNNVEAALNFLL 230
>sp|Q5ZMS6|TDRD3_CHICK Tudor domain-containing protein 3 OS=Gallus gallus GN=TDRD3 PE=2
SV=1
Length = 741
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
E ++ + MGF + +ARQAL+ N++ AA N LL
Sbjct: 289 EKALKHITEMGFSKEAARQALMDNSNNLEAALNFLL 324
>sp|Q6NYG6|TDRD3_DANRE Tudor domain-containing protein 3 OS=Danio rerio GN=tdrd3 PE=2 SV=1
Length = 733
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
E ++ ++ MGF+R +ARQAL+ N++ A N+LL
Sbjct: 293 ERALRDIMEMGFNREAARQALLDNNNNLEVALNLLL 328
>sp|Q2HJG4|TDRD3_BOVIN Tudor domain-containing protein 3 OS=Bos taurus GN=TDRD3 PE=2 SV=1
Length = 722
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 251 EDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
E ++ + MGF + ++RQAL+ N++ AA N+LL
Sbjct: 267 EKALRHITEMGFSKEASRQALMDNGNNLEAALNVLL 302
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAA 281
+PPE+ +++++SMGF R+ A QAL N++ A
Sbjct: 722 QPPEEMVSIIISMGFQRSLAIQALKATNNNLERA 755
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 17 FVIACALFTVFFGIQGRFNKLGLSYQDIFQNFRLWRLIVSGFAFSSAPELMFGL-YLLYY 75
++I+C L + + LG +Y F NF+LWR++ F ++ L+ L ++L+
Sbjct: 50 YIISCVLSRSYEPNERTLMLLGAAYAPAFSNFQLWRVVTPLFLHATILHLVLNLVFILHI 109
Query: 76 FRVFERQIGSNKYSVFILFSITVSFLFEVL 105
E + G+ K+ V S V L +L
Sbjct: 110 SLRLEERYGTKKFLVTYFLSAIVGNLLSML 139
>sp|A6NDB9|PALM3_HUMAN Paralemmin-3 OS=Homo sapiens GN=PALM3 PE=1 SV=2
Length = 673
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 201 TSFFSRLSLPS--MGNPPAAPSR---NVLG------SIPSHAGRQAESNYPLPVP 244
T R SLP+ +G PP +PS +VLG +P AG +E+N P P P
Sbjct: 136 TDLNKRASLPAGLVGTPPESPSEPREDVLGFLPGPRQVPGAAGDSSEANGPCPSP 190
>sp|Q4WGS4|DDI1_ASPFU DNA damage-inducible protein 1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ddi1 PE=3
SV=1
Length = 405
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 242 PVPSTIEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
P PS+ P+DSIA + +GF R A +AL A D++ A L+
Sbjct: 362 PAPSS-RWPQDSIAKITELGFTREEAVRALDAANGDLDGAIGFLI 405
>sp|A1DCU5|DDI1_NEOFI DNA damage-inducible protein 1 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ddi1 PE=3
SV=1
Length = 405
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 242 PVPSTIEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
P PS+ P+DSIA + +GF R A +AL A D++ A L+
Sbjct: 362 PAPSS-RWPQDSIAKITELGFTREEAVRALDAANGDLDGAIGFLI 405
>sp|Q4G2J5|DER12_MAIZE Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1
Length = 243
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 25/241 (10%)
Query: 12 PVTRAFVIACALFTVFFGIQGRFNKL--GLSYQDIFQNFRLWRLIVSGFAFSSAPELMFG 69
P+++A+ C TV + N L L Y +F+ F +WR+ S F F + FG
Sbjct: 13 PISKAYGTLCFFTTVLVRLH-ILNPLFLYLYYPRVFKKFEVWRIFTS-FFFLGPFSINFG 70
Query: 70 LYLLYYFR---VFERQIGSNKYSVFILFSITVSFLFEVLTLALLKDPAMKLTSGPYGLIF 126
+ LL R + E+ + + F+ I F ++L +L +L + GL
Sbjct: 71 IRLLMIARYGVMLEKGAFDKRTADFLWMMI-----FGAISLLVLSVIP-QLNTYVLGLPM 124
Query: 127 ASFVPFYF--DIPVSTRFRVFGVHFSDKSFIYLAGLQLLISSLNRS-LLPGMCGILAGSL 183
S + + + + P + + ++G+ K+F YL + LL+ + S L+PG+ GI+ G L
Sbjct: 125 VSMLVYVWSRENP-NAQINIYGI-LQLKAF-YLPWVMLLLDVIFGSPLMPGLLGIMVGHL 181
Query: 184 Y------RPNFFRIRKAKFPEFITSFFSRLSLPSMGNPPAAPSRNVLGSIPSHAGRQAES 237
Y P K P+++ +R + N P N + GR
Sbjct: 182 YYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVRAPANGNAGTGAFRGRSYRL 241
Query: 238 N 238
N
Sbjct: 242 N 242
>sp|Q2USD7|DDI1_ASPOR DNA damage-inducible protein 1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=ddi1 PE=3 SV=2
Length = 402
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 250 PEDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
P+DSIA + +GF R A +AL A D++ A L+
Sbjct: 366 PQDSIAKITELGFTREEAMRALDAANGDLDGAIGFLI 402
>sp|Q0CJ13|DDI1_ASPTN DNA damage-inducible protein 1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=ddi1 PE=3 SV=1
Length = 413
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 250 PEDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
P+DSIA + +GF R A +AL A D++ A L+
Sbjct: 377 PQDSIAKITELGFTREEAMRALDAANGDLDGAIGFLI 413
>sp|Q54IC9|DERL1_DICDI Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1
PE=3 SV=1
Length = 242
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 1 MNGGPSGFNNAPVTRAFVIACALFTVFFGIQG-------RFNKLGLSYQDIFQNFRLWRL 53
M+G FN+ P ++ +F +F GI FN L L + F++F LWRL
Sbjct: 1 MDGVKEWFNSIPP-----VSRYMFAIFLGIPVLAAMHLISFNYLYLDFTFTFKHFHLWRL 55
Query: 54 IVSGFAFSS-APELMFGLYLLY 74
I + SS P +F L Y
Sbjct: 56 ITAPCIISSLGPMFLFNLIFFY 77
>sp|Q6DFR2|CBLB_XENTR E3 ubiquitin-protein ligase CBL-B OS=Xenopus tropicalis GN=cblb
PE=2 SV=1
Length = 982
Score = 31.6 bits (70), Expect = 6.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 209 LPSMGNPPAAPSRNVLGSIPSHAGRQAESNYPLPVPSTIEPPEDSIAMLVSMGFDRNSAR 268
LPS + P AP+R +P + S E + IA L+ GF +
Sbjct: 892 LPSCPDCPQAPARPP-KPVPRRTAPEIHHRRHYNCDSLAENVDAKIAKLMGEGFPFEEVK 950
Query: 269 QALVQARNDINAATNILLE 287
+AL A+N+++ A +IL E
Sbjct: 951 RALEIAQNNVDVARSILRE 969
>sp|Q5AY89|DDI1_EMENI DNA damage-inducible protein 1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ddi1
PE=3 SV=2
Length = 418
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 250 PEDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
PE SIA + +GF R A +AL A D++ A L+
Sbjct: 382 PEASIAKITELGFTREEATRALEAANGDLDGAIGFLI 418
>sp|A1CDT9|DDI1_ASPCL DNA damage-inducible protein 1 OS=Aspergillus clavatus (strain ATCC
1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=ddi1 PE=3 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 250 PEDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286
P+DSIA + +GF R A +AL A D++ A L+
Sbjct: 368 PQDSIAKITELGFTREEAIRALDAANGDLDGAIGFLI 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,881,246
Number of Sequences: 539616
Number of extensions: 4311162
Number of successful extensions: 11931
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 11868
Number of HSP's gapped (non-prelim): 69
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)