Query 047404
Match_columns 291
No_of_seqs 262 out of 1919
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 1.9E-20 6.4E-25 158.9 16.7 163 9-185 2-175 (181)
2 2nr9_A Protein GLPG homolog; i 99.8 2.7E-20 9.1E-25 159.9 11.7 165 9-186 7-181 (196)
3 2g3q_A Protein YBL047C; endocy 99.5 4E-15 1.4E-19 96.3 4.6 40 249-288 3-42 (43)
4 1vg5_A RSGI RUH-014, rhomboid 99.5 2.2E-14 7.5E-19 102.7 7.5 45 246-290 25-69 (73)
5 1ify_A HHR23A, UV excision rep 99.5 8.9E-15 3E-19 97.2 3.2 41 248-288 6-46 (49)
6 2jy5_A Ubiquilin-1; UBA, alter 99.5 7.7E-14 2.6E-18 93.8 6.6 43 246-288 8-51 (52)
7 1wji_A Tudor domain containing 99.5 5E-14 1.7E-18 98.4 5.9 42 248-289 7-48 (63)
8 1wgn_A UBAP1, ubiquitin associ 99.5 2.3E-14 7.9E-19 97.1 4.0 41 249-289 18-58 (63)
9 1veg_A NEDD8 ultimate buster-1 99.5 4.6E-14 1.6E-18 103.2 5.8 44 247-290 26-69 (83)
10 2knz_A Ubiquilin-4; cytoplasm, 99.5 3.2E-14 1.1E-18 96.1 4.4 42 248-289 9-51 (53)
11 2ooa_A E3 ubiquitin-protein li 99.4 1.8E-13 6.1E-18 89.6 5.6 40 248-287 9-48 (52)
12 1wiv_A UBP14, ubiquitin-specif 99.4 1.6E-13 5.4E-18 98.7 5.8 44 247-290 26-69 (73)
13 1whc_A RSGI RUH-027, UBA/UBX 3 99.4 1.7E-13 5.7E-18 96.1 5.7 43 247-289 6-49 (64)
14 2dak_A Ubiquitin carboxyl-term 99.4 1.3E-13 4.5E-18 96.5 4.9 42 247-288 6-47 (63)
15 2ekk_A UBA domain from E3 ubiq 99.4 1.6E-13 5.6E-18 90.4 5.0 41 247-288 6-46 (47)
16 2bwb_A Ubiquitin-like protein 99.4 1.2E-13 4.2E-18 90.3 3.4 41 248-288 5-46 (46)
17 2crn_A Ubash3A protein; compac 99.4 2.3E-13 7.9E-18 95.3 4.9 43 247-289 6-49 (64)
18 1z96_A DNA-damage, UBA-domain 99.4 2.5E-13 8.6E-18 86.3 4.6 38 249-286 3-40 (40)
19 2juj_A E3 ubiquitin-protein li 99.4 1.8E-13 6.3E-18 90.0 3.8 41 247-287 4-44 (56)
20 2cpw_A CBL-interacting protein 99.4 2.7E-13 9.3E-18 95.0 4.3 41 249-289 18-59 (64)
21 2d9s_A CBL E3 ubiquitin protei 99.4 7.2E-13 2.5E-17 87.2 6.0 42 247-288 6-47 (53)
22 2dag_A Ubiquitin carboxyl-term 99.4 5.4E-13 1.9E-17 96.1 5.9 43 247-289 6-49 (74)
23 1vej_A Riken cDNA 4931431F19; 99.4 6.7E-13 2.3E-17 95.1 6.0 44 246-289 25-69 (74)
24 1dv0_A DNA repair protein HHR2 99.4 2E-13 6.7E-18 89.8 2.6 41 248-288 2-42 (47)
25 2dah_A Ubiquilin-3; UBA domain 99.4 8.2E-13 2.8E-17 89.3 5.6 42 248-289 7-49 (54)
26 2dai_A Ubadc1, ubiquitin assoc 99.3 1.2E-12 4.2E-17 96.2 5.8 43 247-289 26-68 (83)
27 1wr1_B Ubiquitin-like protein 99.3 1.9E-12 6.5E-17 88.6 4.9 42 248-289 15-57 (58)
28 2dna_A Unnamed protein product 99.3 2.2E-12 7.4E-17 90.4 3.8 41 249-289 18-59 (67)
29 1vek_A UBP14, ubiquitin-specif 99.3 5.8E-12 2E-16 92.9 6.1 44 246-289 25-69 (84)
30 2oo9_A E3 ubiquitin-protein li 99.2 1.3E-11 4.4E-16 78.3 5.2 39 250-288 4-42 (46)
31 2dkl_A Trinucleotide repeat co 99.2 6.9E-12 2.4E-16 92.5 4.4 41 249-289 20-60 (85)
32 2cwb_A Chimera of immunoglobul 99.1 8.1E-11 2.8E-15 90.3 6.4 44 246-289 62-106 (108)
33 2lbc_A Ubiquitin carboxyl-term 99.0 2.9E-10 9.8E-15 90.4 5.9 43 247-289 75-117 (126)
34 4ae4_A Ubiquitin-associated pr 99.0 2.6E-10 8.9E-15 89.3 4.9 42 249-290 75-116 (118)
35 2cp8_A NEXT to BRCA1 gene 1 pr 98.9 7.4E-10 2.5E-14 73.9 4.1 42 247-288 6-48 (54)
36 2lbc_A Ubiquitin carboxyl-term 98.9 1.1E-09 3.8E-14 87.1 5.0 42 248-289 1-43 (126)
37 1wj7_A Hypothetical protein (R 98.8 2.7E-09 9.2E-14 80.7 5.0 40 250-289 39-79 (104)
38 3k9o_A Ubiquitin-conjugating e 98.8 1.9E-09 6.6E-14 92.4 4.7 40 249-288 162-201 (201)
39 2cos_A Serine/threonine protei 98.8 5.1E-09 1.8E-13 69.0 4.9 40 248-287 7-47 (54)
40 4ae4_A Ubiquitin-associated pr 98.8 3.5E-09 1.2E-13 82.9 4.1 41 248-288 6-46 (118)
41 1oqy_A HHR23A, UV excision rep 98.7 2.9E-09 1E-13 99.1 2.3 41 248-288 166-206 (368)
42 2qsf_X RAD23, UV excision repa 98.7 9.8E-09 3.4E-13 85.0 4.1 42 247-288 127-168 (171)
43 3e46_A Ubiquitin-conjugating e 98.5 1.2E-07 4.2E-12 83.7 5.5 40 249-288 214-253 (253)
44 1oqy_A HHR23A, UV excision rep 98.5 3.3E-08 1.1E-12 92.0 1.7 42 247-288 322-363 (368)
45 1otr_A Protein CUE2; protein-p 98.1 3.2E-06 1.1E-10 55.4 4.1 39 250-288 4-44 (49)
46 1wgl_A TOLL-interacting protei 98.0 1E-05 3.5E-10 55.2 4.9 42 247-288 6-49 (59)
47 2cp9_A EF-TS, EF-TSMT, elongat 97.7 4.5E-05 1.6E-09 52.6 5.0 41 247-287 6-47 (64)
48 2pwq_A Ubiquitin conjugating e 97.7 5.5E-06 1.9E-10 71.5 0.0 39 250-288 177-215 (216)
49 2dhy_A CUE domain-containing p 97.7 0.00013 4.3E-09 51.0 6.6 39 248-287 16-57 (67)
50 3ihp_A Ubiquitin carboxyl-term 97.6 4.5E-05 1.5E-09 78.3 5.8 42 247-288 717-758 (854)
51 1q02_A Sequestosome 1; helical 97.3 0.00017 6E-09 47.0 3.3 38 250-287 10-49 (52)
52 1v92_A NSFL1 cofactor P47; 3-h 97.2 0.00064 2.2E-08 43.6 5.1 41 250-290 5-46 (46)
53 2dal_A Protein KIAA0794; FAS a 97.1 0.0011 3.9E-08 45.4 5.7 42 249-290 14-56 (62)
54 3ihp_A Ubiquitin carboxyl-term 96.9 0.00048 1.7E-08 70.7 4.3 43 246-288 648-691 (854)
55 1tr8_A Conserved protein (MTH1 96.8 0.0013 4.6E-08 49.6 4.5 39 247-285 62-101 (102)
56 1tte_A Ubiquitin-conjugating e 96.5 0.0015 5E-08 56.2 3.3 30 249-278 168-197 (215)
57 2dam_A ETEA protein; KIAA0887, 96.4 0.0046 1.6E-07 43.1 5.0 41 249-289 17-59 (67)
58 2dzl_A Protein FAM100B; UBA-li 96.2 0.0074 2.5E-07 41.8 4.8 38 252-289 19-57 (66)
59 3e21_A HFAF1, FAS-associated f 96.0 0.0055 1.9E-07 39.1 3.3 36 249-284 4-41 (45)
60 2qho_B E3 ubiquitin-protein li 96.0 0.015 5.1E-07 37.2 5.1 42 246-287 5-48 (53)
61 4dbg_B Ring finger protein 31; 95.9 0.0063 2.2E-07 49.1 3.8 36 250-285 102-138 (162)
62 2di0_A Activating signal coint 95.6 0.022 7.6E-07 39.8 5.3 41 250-290 13-55 (71)
63 1p3q_Q VPS9P, vacuolar protein 94.3 0.013 4.6E-07 38.7 1.1 38 250-287 12-51 (54)
64 1ixs_A Holliday junction DNA h 92.3 0.21 7.3E-06 33.9 4.7 35 249-283 16-55 (62)
65 1ufz_A Hypothetical protein BA 89.4 0.62 2.1E-05 33.4 5.0 36 253-288 40-75 (83)
66 1vdl_A Ubiquitin carboxyl-term 88.9 1 3.5E-05 31.5 5.6 41 249-289 23-65 (80)
67 2ejs_A Autocrine motility fact 86.3 1.1 3.8E-05 29.9 4.4 40 249-289 12-53 (58)
68 3k6g_A Telomeric repeat-bindin 85.7 1.6 5.6E-05 32.3 5.5 39 251-289 14-53 (111)
69 4g3o_A E3 ubiquitin-protein li 84.7 1.8 6.1E-05 28.8 4.8 38 251-289 18-57 (58)
70 2ekf_A Ancient ubiquitous prot 82.8 2.2 7.6E-05 28.7 4.7 41 248-289 11-53 (61)
71 4dbg_B Ring finger protein 31; 81.8 1.1 3.6E-05 36.2 3.3 26 262-287 75-100 (162)
72 2lva_A Ubiquitin carboxyl-term 82.1 0.3 1E-05 37.5 0.0 40 250-289 18-59 (129)
73 1oai_A Nuclear RNA export fact 78.1 3.2 0.00011 27.7 4.4 36 251-286 8-44 (59)
74 1cuk_A RUVA protein; DNA repai 78.1 2 6.9E-05 36.1 4.1 33 250-282 160-195 (203)
75 2ztd_A Holliday junction ATP-d 76.1 4 0.00014 34.5 5.5 34 250-283 164-202 (212)
76 3e7l_A Transcriptional regulat 74.8 1.8 6E-05 29.0 2.4 24 262-285 19-42 (63)
77 2jp7_A MRNA export factor MEX6 74.3 5.1 0.00017 26.5 4.5 37 251-287 7-44 (57)
78 1umq_A Photosynthetic apparatu 73.5 1.9 6.4E-05 30.8 2.3 23 263-285 42-64 (81)
79 3fe3_A MAP/microtubule affinit 67.2 12 0.00042 32.9 6.9 40 248-287 287-326 (328)
80 1ixr_A Holliday junction DNA h 58.1 2.1 7.2E-05 35.6 0.0 25 250-274 146-170 (191)
81 2kna_A Baculoviral IAP repeat- 56.5 8.1 0.00028 28.7 3.1 35 253-287 30-71 (104)
82 2w84_A Peroxisomal membrane pr 56.4 12 0.0004 25.8 3.5 30 249-278 34-63 (70)
83 1ntc_A Protein (nitrogen regul 52.9 4 0.00014 29.3 0.8 24 262-285 51-74 (91)
84 1eto_A FIS, factor for inversi 52.5 7.9 0.00027 28.4 2.4 24 262-285 58-81 (98)
85 1g2h_A Transcriptional regulat 49.6 7.3 0.00025 25.7 1.6 23 262-285 21-43 (61)
86 3ff5_A PEX14P, peroxisomal bio 45.9 19 0.00064 23.5 3.1 26 249-274 29-54 (54)
87 2l3n_A DNA-binding protein RAP 40.5 54 0.0018 22.9 4.9 39 251-289 15-54 (104)
88 3h4j_B AMPK kdaid, SNF1-like p 38.7 16 0.00056 32.3 2.7 40 247-286 279-319 (336)
89 4fp9_B Mterf domain-containing 37.9 22 0.00075 32.0 3.4 27 250-276 46-72 (335)
90 1jkg_B TAP; NTF2-like domain, 31.0 10 0.00035 32.7 0.0 35 251-285 199-234 (250)
91 2xag_B REST corepressor 1; ami 30.7 10 0.00036 35.9 0.0 38 249-286 141-183 (482)
92 2x9q_A Cyclodipeptide syntheta 30.7 30 0.001 30.3 2.9 37 249-285 118-158 (289)
93 3t6p_A Baculoviral IAP repeat- 30.0 32 0.0011 31.1 3.1 38 250-287 119-163 (345)
94 3q8k_A Flap endonuclease 1; he 26.8 53 0.0018 29.4 4.0 27 248-274 299-327 (341)
95 1ojl_A Transcriptional regulat 23.2 35 0.0012 29.7 2.1 24 262-285 268-291 (304)
96 2gpi_A Conserved hypothetical 22.2 47 0.0016 24.0 2.2 39 249-289 36-77 (91)
97 3tri_A Pyrroline-5-carboxylate 21.7 1.3E+02 0.0044 25.7 5.4 32 255-289 190-221 (280)
98 1nri_A Hypothetical protein HI 21.1 33 0.0011 30.1 1.4 26 260-285 255-280 (306)
99 1g2y_A Hepatocyte nuclear fact 21.0 1.1E+02 0.0039 17.4 3.1 23 250-272 9-31 (32)
100 3gt0_A Pyrroline-5-carboxylate 20.7 1.4E+02 0.0046 24.7 5.2 29 257-288 190-218 (247)
101 3mva_O Transcription terminati 20.3 52 0.0018 29.3 2.6 24 251-274 52-75 (343)
102 3m66_A Mterf3, mterf domain-co 20.3 81 0.0028 26.8 3.8 38 251-288 148-193 (270)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.85 E-value=1.9e-20 Score=158.89 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=119.9
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccc---cccccchHHHhhhccchhhhhhhcccCChhHHHHHHHHHHHH-HHHhhhcc
Q 047404 9 NNAPVTRAFVIACALFTVFFGIQGRF---NKLGLSYQDIFQNFRLWRLIVSGFAFSSAPELMFGLYLLYYF-RVFERQIG 84 (291)
Q Consensus 9 ~~~PVTk~li~~~~~~sl~~~~~~~~---~~l~l~~~~i~~~~q~WRLlT~~f~h~~~~~ll~n~~~ly~~-r~lEr~~G 84 (291)
+.+|||+.++++|++++++....+.. .++.++++ ..+++|+||++|+.|.|.+..|+++||+.+|.+ +.+||.+|
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~-~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G 80 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFD-PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG 80 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCS-GGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChh-hccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46899999999999999876543221 23344433 356789999999999999999999999999986 89999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChHHHHHHHHHHHH---hhcCccceEEEeeeecchhHHHHH---H
Q 047404 85 SNKYSVFILFSITVSFLFEVLTLALLKDPAMKLTSGPYGLIFASFVPFY---FDIPVSTRFRVFGVHFSDKSFIYL---A 158 (291)
Q Consensus 85 s~kf~~~~l~~~~~s~ll~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~---~~~P~~~~~~i~g~~~~~k~~~~l---~ 158 (291)
++||+.+++.+++.+++.+... . +. ...|+||.+|+++..+. +..|+... .++.+...++ +
T Consensus 81 ~~~fl~~yl~~~i~~~l~~~~~----~-~~--~~vGaSGai~gl~g~~~~~~~~~p~~~~------~l~~~~~~~~~~~~ 147 (181)
T 2xov_A 81 SGKLIVITLISALLSGYVQQKF----S-GP--WFGGLSGVVYALMGYVWLRGERDPQSGI------YLQRGLIIFALIWI 147 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----H-CS--CCCCSHHHHHHHHHHHHHHHHHCGGGSC------CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----c-CC--CceeHHHHHHHHHHHHHHHHhhCcCcee------eeHHHHHHHHHHHH
Confidence 9999999999999998876542 2 22 27899999999998653 35565431 1222222211 2
Q ss_pred HHHHHh-cCCCchHHHHHHHHHhhHhhc
Q 047404 159 GLQLLI-SSLNRSLLPGMCGILAGSLYR 185 (291)
Q Consensus 159 ~l~ll~-~~~~~s~~~~l~Gil~G~ly~ 185 (291)
+.++.. .+++.+..+|++|+++|.++.
T Consensus 148 ~~~~~~~~~~~v~~~aHlgG~l~G~l~~ 175 (181)
T 2xov_A 148 VAGWFDLFGMSMANGAHIAGLAVGLAMA 175 (181)
T ss_dssp HHHHTTSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 233321 134799999999999999986
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.83 E-value=2.7e-20 Score=159.88 Aligned_cols=165 Identities=14% Similarity=0.215 Sum_probs=118.8
Q ss_pred cccchHHHHHHHHHHHHHHHhhhcc---ccccccchHHHhhhccchhhhhhhcccCChhHHHHHHHHHHHH-HHHhhhcc
Q 047404 9 NNAPVTRAFVIACALFTVFFGIQGR---FNKLGLSYQDIFQNFRLWRLIVSGFAFSSAPELMFGLYLLYYF-RVFERQIG 84 (291)
Q Consensus 9 ~~~PVTk~li~~~~~~sl~~~~~~~---~~~l~l~~~~i~~~~q~WRLlT~~f~h~~~~~ll~n~~~ly~~-r~lEr~~G 84 (291)
+++|||+.++++|++++++....+. ...+.++++.+ .++|+||++|+.|.|.+..|+++||+.+|.+ +.+|+.+|
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G 85 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG 85 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4689999999999999987644321 12344444333 6789999999999999999999999999987 89999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChHHHHHHHHHHHHh---hcCccceEEEeeeecchhHHHH-HHHH
Q 047404 85 SNKYSVFILFSITVSFLFEVLTLALLKDPAMKLTSGPYGLIFASFVPFYF---DIPVSTRFRVFGVHFSDKSFIY-LAGL 160 (291)
Q Consensus 85 s~kf~~~~l~~~~~s~ll~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~---~~P~~~~~~i~g~~~~~k~~~~-l~~l 160 (291)
++||+.+++.+++.+++.+... . +. ...|+||.+|+++..+.. ..|.. +.++.+...+.. .+.+
T Consensus 86 ~~~~l~~yl~~~~~~~l~~~~~----~-~~--~~vGaSGai~gl~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 153 (196)
T 2nr9_A 86 SVKLLMLYVVASAITGYVQNYV----S-GP--AFFGLSGVVYAVLGYVFIRDKLNHHL-----FDLPEGFFTMLLVGIAL 153 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----H-CS--CCCCSHHHHHHHHHHHHHHHHSSTTS-----CCCCCSSTTTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----c-CC--CeeeHHHHHHHHHHHHHHHHHhcchh-----hcchHHHHHHHHHHHHH
Confidence 9999999999999998876542 2 22 278999999999986543 22322 112222222111 1223
Q ss_pred HHHh--cCCCchHHHHHHHHHhhHhhcc
Q 047404 161 QLLI--SSLNRSLLPGMCGILAGSLYRP 186 (291)
Q Consensus 161 ~ll~--~~~~~s~~~~l~Gil~G~ly~~ 186 (291)
++.. .+++.+..+|++|+++|.++..
T Consensus 154 ~~~~~~~~~~v~~~aHlgG~l~G~l~~~ 181 (196)
T 2nr9_A 154 GFISPLFGVEMGNAAHISGLIVGLIWGF 181 (196)
T ss_dssp HHHSCSSCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHHH
Confidence 3332 2346899999999999999873
No 3
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.54 E-value=4e-15 Score=96.32 Aligned_cols=40 Identities=38% Similarity=0.562 Sum_probs=38.1
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
+++++|++|++|||++++|++||++++||+|+|+|||+++
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4689999999999999999999999999999999999975
No 4
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.52 E-value=2.2e-14 Score=102.74 Aligned_cols=45 Identities=36% Similarity=0.589 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 047404 246 TIEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQP 290 (291)
Q Consensus 246 ~~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~~ 290 (291)
..++++++|++|++|||+|++|++||++++||+|+|+|||++++.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 346789999999999999999999999999999999999998763
No 5
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.49 E-value=8.9e-15 Score=97.20 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
++++++|++|++|||+|++|++||++++||+|+|+|||+++
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35789999999999999999999999999999999999985
No 6
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.47 E-value=7.7e-14 Score=93.79 Aligned_cols=43 Identities=35% Similarity=0.461 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 246 TIEPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 246 ~~~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
+.+..+++|++|++||| +|+++++||++++||+|+|+|||+++
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 34567999999999999 99999999999999999999999975
No 7
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.47 E-value=5e-14 Score=98.35 Aligned_cols=42 Identities=33% Similarity=0.596 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
++++++|++|++|||++++|++||++|+||+|+|+|||++++
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 478999999999999999999999999999999999999864
No 8
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.47 E-value=2.3e-14 Score=97.08 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=38.3
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
..++.|++|++|||++++|++||+++|||+|+|+||||++.
T Consensus 18 se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 18 SERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35789999999999999999999999999999999999864
No 9
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.47 E-value=4.6e-14 Score=103.22 Aligned_cols=44 Identities=32% Similarity=0.393 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQP 290 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~~ 290 (291)
.++++++|++|++|||+|++|++||++++||+|+|++||+++++
T Consensus 26 ~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 26 ASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 35689999999999999999999999999999999999999765
No 10
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.47 E-value=3.2e-14 Score=96.06 Aligned_cols=42 Identities=40% Similarity=0.513 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 248 EPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+..+++|++|++||| ++++|++||++++||+|+|+|||++++
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 345778999999999 999999999999999999999999875
No 11
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=99.43 E-value=1.8e-13 Score=89.63 Aligned_cols=40 Identities=33% Similarity=0.460 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
++.+++|++||+|||||++|++||+.++||+|.|.++|++
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3557999999999999999999999999999999999986
No 12
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.42 E-value=1.6e-13 Score=98.69 Aligned_cols=44 Identities=30% Similarity=0.454 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQP 290 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~~ 290 (291)
.++++++|++|++|||+|++|++||++|+||+|+|++||++++.
T Consensus 26 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 26 SDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999999999999763
No 13
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.42 E-value=1.7e-13 Score=96.12 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHHHHHHHhcC
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQA-RNDINAATNILLEAQ 289 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~-~~~~~~A~~~l~~~~ 289 (291)
..+++++|++|++|||++++|++||++| |||+|+|+|||+++.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 4578999999999999999999999999 799999999999864
No 14
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=96.47 Aligned_cols=42 Identities=36% Similarity=0.629 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.++++++|++|++|||+|++|++||++++||+|+|+|||+++
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 6 SGPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 357899999999999999999999999999999999999985
No 15
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=90.36 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
..+++++|++|++|||++++|++||+++| |+|+|+|||+++
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 35789999999999999999999999995 999999999975
No 16
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.40 E-value=1.2e-13 Score=90.30 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 248 EPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
+..+++|++|++||| +++++++||++++||+|+|+|||+++
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 356899999999999 68889999999999999999999963
No 17
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.39 E-value=2.3e-13 Score=95.27 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcC
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARN-DINAATNILLEAQ 289 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~-~~~~A~~~l~~~~ 289 (291)
..++++.|++|++|||++++|++||++|+| |+|+|+|||+++.
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHC 49 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 456889999999999999999999999987 9999999999865
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.39 E-value=2.5e-13 Score=86.34 Aligned_cols=38 Identities=47% Similarity=0.572 Sum_probs=36.0
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILL 286 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~ 286 (291)
..+++|++|++|||++++|++||++|+||+|+|++||+
T Consensus 3 ~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 45889999999999999999999999999999999985
No 19
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-13 Score=90.04 Aligned_cols=41 Identities=37% Similarity=0.458 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
.++.|++|++||+|||||++|++||..++||+|.|.|+|++
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34679999999999999999999999999999999999987
No 20
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.38 E-value=2.7e-13 Score=95.01 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=38.8
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARN-DINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~-~~~~A~~~l~~~~ 289 (291)
+++++|++|++|||++++|++||++|+| |+|+|+|||++++
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 6789999999999999999999999998 9999999999865
No 21
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=7.2e-13 Score=87.23 Aligned_cols=42 Identities=36% Similarity=0.423 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.++.+++|++||+|||+|++|++||..++||+|.|.++|.+.
T Consensus 6 ~~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 6 SGQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CSCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999874
No 22
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.4e-13 Score=96.14 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcC
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARN-DINAATNILLEAQ 289 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~-~~~~A~~~l~~~~ 289 (291)
.++++++|++|++|||++++|++||++|+| |+|+|+|||+++.
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 6 SGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp CSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 357899999999999999999999999986 8999999999864
No 23
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.37 E-value=6.7e-13 Score=95.09 Aligned_cols=44 Identities=36% Similarity=0.504 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 246 TIEPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 246 ~~~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+.+..+++|++|++||| +|+++++||++++||+|+|+|||+++.
T Consensus 25 pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~ 69 (74)
T 1vej_A 25 TEGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGAS 69 (74)
T ss_dssp TTTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 34567999999999999 799999999999999999999999864
No 24
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.36 E-value=2e-13 Score=89.77 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
+.++++|++|++|||+|++|++||.+|++|+|+|+||||++
T Consensus 2 ~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 2 SQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp -CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35799999999999999999999999999999999999975
No 25
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.36 E-value=8.2e-13 Score=89.28 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 248 EPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+..+++|++|++||| +++++++||+++|||+|+|+|||+++.
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 456999999999999 556689999999999999999999753
No 26
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=96.22 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
.++++++|++|++|||++++|++||++|+||+|+|+|||+++.
T Consensus 26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3478999999999999999999999999999999999999864
No 27
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.30 E-value=1.9e-12 Score=88.60 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 248 EPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+..+++|++|++||| +++++++||++++||+|+|+|||+++.
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 346889999999999 688999999999999999999999863
No 28
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.27 E-value=2.2e-12 Score=90.36 Aligned_cols=41 Identities=34% Similarity=0.402 Sum_probs=36.7
Q ss_pred CCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
..+++|++|.+||| +++++++||++++||+|+|+|||+++.
T Consensus 18 ~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~ 59 (67)
T 2dna_A 18 RFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQ 59 (67)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 45679999999999 677779999999999999999999864
No 29
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.26 E-value=5.8e-12 Score=92.92 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHcCCCCHHHHHHHHHHhC-CCHHHHHHHHHhcC
Q 047404 246 TIEPPEDSIAMLVSMGFDRNSARQALVQAR-NDINAATNILLEAQ 289 (291)
Q Consensus 246 ~~~~~~~~v~~l~~mGf~~~~~~~aL~~~~-~~~~~A~~~l~~~~ 289 (291)
...+++++|++|++|||++++|++||++++ +|+|+|+|||+++.
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 346799999999999999999999999995 79999999999864
No 30
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=99.23 E-value=1.3e-11 Score=78.32 Aligned_cols=39 Identities=38% Similarity=0.483 Sum_probs=36.9
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 250 PEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
-|++|++|++||||+++|++||..++||+|.|.|.|.+.
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 478999999999999999999999999999999999874
No 31
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.22 E-value=6.9e-12 Score=92.55 Aligned_cols=41 Identities=32% Similarity=0.423 Sum_probs=38.5
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+++++|++|++|||+|++|++||+.++||+|+|+|||+++.
T Consensus 20 ~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 20 IMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 46999999999999999999999999999999999999864
No 32
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.12 E-value=8.1e-11 Score=90.28 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 246 TIEPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 246 ~~~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+.+..+++|++|.+||| +++++++||++++||+|+|+|+|+++.
T Consensus 62 ~e~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 62 EGSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp -CCTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred cccchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 34466999999999999 789999999999999999999999864
No 33
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.02 E-value=2.9e-10 Score=90.44 Aligned_cols=43 Identities=37% Similarity=0.632 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
..+++++|++|++|||++++|++||++++||+|+|++||+++.
T Consensus 75 ~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~ 117 (126)
T 2lbc_A 75 NQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHP 117 (126)
T ss_dssp CCCCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred cCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3478999999999999999999999999999999999999864
No 34
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.00 E-value=2.6e-10 Score=89.35 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEAQP 290 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~~ 290 (291)
++.++|.+|++|||++++|++||+.+|||+|+|+|||+...|
T Consensus 75 ~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 356789999999999999999999999999999999998654
No 35
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.93 E-value=7.4e-10 Score=73.87 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSMGF-DRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.+.+..++++|.|||| |++..++||+++|||+++|++.|++.
T Consensus 6 ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4566779999999999 99999999999999999999999863
No 36
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=87.06 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcC
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARN-DINAATNILLEAQ 289 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~-~~~~A~~~l~~~~ 289 (291)
+++++.+++|++|||++++|++||+.|+| |+|.|++||++++
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHM 43 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 46899999999999999999999999966 9999999999853
No 37
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.84 E-value=2.7e-09 Score=80.70 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=38.0
Q ss_pred CHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 250 PEDSIAMLVSM-GFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 250 ~~~~v~~l~~m-Gf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
.+|+|++|++| ||++++|+.||..||||+++|+++|+++.
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 48899999999 99999999999999999999999999865
No 38
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.83 E-value=1.9e-09 Score=92.39 Aligned_cols=40 Identities=38% Similarity=0.496 Sum_probs=37.9
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
..+++|++|++|||+|++|++||+++|||+++|+|+|+++
T Consensus 162 ~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4589999999999999999999999999999999999974
No 39
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.81 E-value=5.1e-09 Score=68.97 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARN-DINAATNILLE 287 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~-~~~~A~~~l~~ 287 (291)
+++...+++|++||||++.|.+||++||| .+|.|+|||..
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 67888899999999999999999999966 89999999975
No 40
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.78 E-value=3.5e-09 Score=82.89 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
+.+.+.|++|++|||++++|++||++++||+|+|+|||++.
T Consensus 6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 6 PSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999974
No 41
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.72 E-value=2.9e-09 Score=99.06 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
+.+++.|++|++|||+|++|++||++++||+|+|+|||+++
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35789999999999999999999999999999999999864
No 42
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.68 E-value=9.8e-09 Score=84.98 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.+.++++|++|++|||+|+.|++||.+|++|+|.|+++||++
T Consensus 127 tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999985
No 43
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.48 E-value=1.2e-07 Score=83.71 Aligned_cols=40 Identities=35% Similarity=0.454 Sum_probs=37.7
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
..+++|++|++|||+|++|+.||+++|||+|+|+|.|+++
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~~ 253 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3589999999999999999999999999999999999974
No 44
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.47 E-value=3.3e-08 Score=91.99 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.+.++|+|++|++|||+++.|++||++|+||+|+|+||||++
T Consensus 322 t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 322 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 456899999999999999999999999999999999999985
No 45
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=98.08 E-value=3.2e-06 Score=55.40 Aligned_cols=39 Identities=21% Similarity=0.478 Sum_probs=35.2
Q ss_pred CHHHHHHHHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 250 PEDSIAMLVSM--GFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 250 ~~~~v~~l~~m--Gf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.+++++.|.|| .-++.+++.+|.++|||+|+|++.|++.
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47899999999 2379999999999999999999999985
No 46
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.96 E-value=1e-05 Score=55.22 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSM--GFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~m--Gf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.++.||++++|.+| ..+++.++.+|++++||+|+|++.|++-
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35689999999999 3489999999999999999999999984
No 47
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.72 E-value=4.5e-05 Score=52.64 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 247 IEPPEDSIAMLVS-MGFDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 247 ~~~~~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
...+.+.|++|.+ -|.+..+|++||..+|||++.|++||-+
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3567889999999 5999999999999999999999999854
No 48
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=97.69 E-value=5.5e-06 Score=71.49 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=0.0
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 250 PEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.+++|+++++|||+++++++||+..+||+++|+|.|+++
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 389999999999999999999999999999999999975
No 49
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=0.00013 Score=50.97 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHcCCC---CHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 248 EPPEDSIAMLVSMGF---DRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf---~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
.+.++++++|.+| | +++.++.+|++++||+|+|+|-|++
T Consensus 16 ~~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 16 LEFNQAMDDFKTM-FPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCSHHHHHHHHHH-CSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-CCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4569999999999 6 8999999999999999999999987
No 50
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.63 E-value=4.5e-05 Score=78.32 Aligned_cols=42 Identities=36% Similarity=0.616 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 247 IEPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 247 ~~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
..+++|.|++|.+|||++++|++||++++||+|+|+||++++
T Consensus 717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 717 DPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp --CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 357899999999999999999999999999999999999974
No 51
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=97.30 E-value=0.00017 Score=46.98 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=32.5
Q ss_pred CHHHHHHHHcCCCCHHHH--HHHHHHhCCCHHHHHHHHHh
Q 047404 250 PEDSIAMLVSMGFDRNSA--RQALVQARNDINAATNILLE 287 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~--~~aL~~~~~~~~~A~~~l~~ 287 (291)
-+++++|+++|||+-+-. .+.|...|+|+.+|+|.|-.
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 478999999999987765 58999999999999997643
No 52
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=97.18 E-value=0.00064 Score=43.59 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=36.7
Q ss_pred CHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 047404 250 PEDSIAMLVS-MGFDRNSARQALVQARNDINAATNILLEAQP 290 (291)
Q Consensus 250 ~~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~~ 290 (291)
.+++|++.++ .|-+++.|++-|.+++||+|+|++..+++.|
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~~ 46 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGG 46 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 4678999888 6999999999999999999999999888754
No 53
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.0011 Score=45.45 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=37.4
Q ss_pred CCHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 047404 249 PPEDSIAMLVS-MGFDRNSARQALVQARNDINAATNILLEAQP 290 (291)
Q Consensus 249 ~~~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~~ 290 (291)
..+|+|++.++ .|=+++.|++-|.+++||+|+|++..+++.+
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 34788999988 6999999999999999999999999888754
No 54
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.94 E-value=0.00048 Score=70.67 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHcCCCCHHHHHHHHHHhC-CCHHHHHHHHHhc
Q 047404 246 TIEPPEDSIAMLVSMGFDRNSARQALVQAR-NDINAATNILLEA 288 (291)
Q Consensus 246 ~~~~~~~~v~~l~~mGf~~~~~~~aL~~~~-~~~~~A~~~l~~~ 288 (291)
...++++.+++|++|||+++++++||..++ +|+|.|++||+++
T Consensus 648 ~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~h 691 (854)
T 3ihp_A 648 APMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSH 691 (854)
T ss_dssp -----CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhc
Confidence 345788999999999999999999999994 5799999999875
No 55
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.78 E-value=0.0013 Score=49.64 Aligned_cols=39 Identities=33% Similarity=0.514 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 247 IEPPEDSIAMLVS-MGFDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 247 ~~~~~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
...++|.|+.+++ .|-+|++|++||+.+|||+-.|+-.|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4578999999988 89999999999999999999998654
No 56
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=96.48 E-value=0.0015 Score=56.19 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=28.0
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCH
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDI 278 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~ 278 (291)
.++++|+++++|||++++|++||+.+|+|.
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 468899999999999999999999999886
No 57
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.0046 Score=43.07 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCHHHHHHHHc-CC-CCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVS-MG-FDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~-mG-f~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
..+|+|++.++ .| =+.++|+..|.++|||+|.|++..++++
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 35778999988 58 6899999999999999999999988764
No 58
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.16 E-value=0.0074 Score=41.84 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 252 DSIAMLVS-MGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 252 ~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
++|++.++ .|=+++.|++-|.+++||+|+|++..+++.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 78999888 599999999999999999999999888754
No 59
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.02 E-value=0.0055 Score=39.14 Aligned_cols=36 Identities=28% Similarity=0.205 Sum_probs=32.1
Q ss_pred CCHHHHHHHHcC-CCCH-HHHHHHHHHhCCCHHHHHHH
Q 047404 249 PPEDSIAMLVSM-GFDR-NSARQALVQARNDINAATNI 284 (291)
Q Consensus 249 ~~~~~v~~l~~m-Gf~~-~~~~~aL~~~~~~~~~A~~~ 284 (291)
..+|+|+++.++ |-+. ++|+.=|.++|||++.|++-
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 458999999996 9985 99999999999999999863
No 60
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=95.98 E-value=0.015 Score=37.24 Aligned_cols=42 Identities=29% Similarity=0.288 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 246 TIEPPEDSIAMLVS--MGFDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 246 ~~~~~~~~v~~l~~--mGf~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
...++||.|++-.. -|=+|+-.++-|+++|=|++.|+|-|++
T Consensus 5 ~~~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 5 ASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp GGGSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred cccCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 34567898888655 6999999999999999999999999886
No 61
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=95.87 E-value=0.0063 Score=49.11 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=33.0
Q ss_pred CHHHHHHHHcCCC-CHHHHHHHHHHhCCCHHHHHHHH
Q 047404 250 PEDSIAMLVSMGF-DRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 250 ~~~~v~~l~~mGf-~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
...|++.|++.|| +++++.+||.+++||++.|+..|
T Consensus 102 R~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 3679999999997 89999999999999999999865
No 62
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.58 E-value=0.022 Score=39.84 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=35.8
Q ss_pred CHHHHHHHHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 047404 250 PEDSIAMLVSM--GFDRNSARQALVQARNDINAATNILLEAQP 290 (291)
Q Consensus 250 ~~~~v~~l~~m--Gf~~~~~~~aL~~~~~~~~~A~~~l~~~~~ 290 (291)
-+++|+++.++ -+.+..++++|...|+|+|++++.|+++.-
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L 55 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL 55 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence 47788899887 457999999999999999999999999753
No 63
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=94.27 E-value=0.013 Score=38.73 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=29.1
Q ss_pred CHHHHHHHHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 250 PEDSIAMLVSM--GFDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 250 ~~~~v~~l~~m--Gf~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
.++.+++|.+| ..|++-++..|++.+||++.|+|-|++
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47889999999 458999999999999999999999886
No 64
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=92.31 E-value=0.21 Score=33.91 Aligned_cols=35 Identities=17% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHh-----CCCHHHHHH
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQA-----RNDINAATN 283 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~-----~~~~~~A~~ 283 (291)
..+|.++-|+++||++.+|.+|+++. +.|+|..+.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr 55 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIK 55 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 34789999999999999999999876 235655443
No 65
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=89.38 E-value=0.62 Score=33.36 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=28.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 253 SIAMLVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 253 ~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
+|+..+.=-.++++.++|-.+++-|+|+|+|++|+.
T Consensus 40 ~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 40 HMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 334443333799999999999999999999999964
No 66
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.89 E-value=1 Score=31.47 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=34.4
Q ss_pred CCHHHHHHHHc-CCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVS-MGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~-mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
..+--++||.| -|. |..--.+||++.+||+..|+.+|-++.
T Consensus 23 ~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 23 HQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp CHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 34557899999 698 677778999999999999999998764
No 67
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.27 E-value=1.1 Score=29.91 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=34.3
Q ss_pred CCHHHHHHHHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVSM--GFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~m--Gf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
..++.++++.+| -.+++.++.-|+++| ++|..+|-+++++
T Consensus 12 q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 12 QLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 457788889998 348999999999997 9999999999865
No 68
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=85.69 E-value=1.6 Score=32.35 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=32.5
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 251 EDSIAMLVS-MGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 251 ~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
.+.|++||+ ..-|--.+.+||-+++||+++|-.+|.+.+
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 456666666 566888999999999999999999999865
No 69
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=84.73 E-value=1.8 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHHHHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 251 EDSIAMLVSM--GFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 251 ~~~v~~l~~m--Gf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
++-++++.+| -.++++++.-|+++ |++|..+|-+++++
T Consensus 18 ~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeGr 57 (58)
T 4g3o_A 18 NAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEGR 57 (58)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHccc
Confidence 4567777888 34899999999998 89999999999864
No 70
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.76 E-value=2.2 Score=28.69 Aligned_cols=41 Identities=10% Similarity=0.047 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHcC--CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 248 EPPEDSIAMLVSM--GFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 248 ~~~~~~v~~l~~m--Gf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
..-++.++++.+| -.+++.++.-|+++| ++|..+|-+++++
T Consensus 11 ~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (61)
T 2ekf_A 11 VQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGA 53 (61)
T ss_dssp CCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 3457788999998 348999999999886 9999999999865
No 71
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=81.77 E-value=1.1 Score=36.18 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 262 FDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 262 f~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
++.++|++|+...+||+++|+...+.
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~ci~ 100 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEECVR 100 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCChHHHHHHHHH
Confidence 68899999999999999999987654
No 72
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.11 E-value=0.3 Score=37.53 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=33.1
Q ss_pred CHHHHHHHHc-CCC-CHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 250 PEDSIAMLVS-MGF-DRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 250 ~~~~v~~l~~-mGf-~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
.+--++||.| -|. |.+.-.+||+++|||++.|+.+|-++.
T Consensus 18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~ 59 (129)
T 2lva_A 18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDER 59 (129)
Confidence 3446888888 588 588889999999999999999987653
No 73
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=78.13 E-value=3.2 Score=27.65 Aligned_cols=36 Identities=8% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 047404 251 EDSIAMLVS-MGFDRNSARQALVQARNDINAATNILL 286 (291)
Q Consensus 251 ~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l~ 286 (291)
++-|.++.+ -|-..+=+.++|..++||.++|+.-..
T Consensus 8 ~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 8 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444555544 488999999999999999999998643
No 74
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=78.12 E-value=2 Score=36.10 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=27.2
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHh---CCCHHHHH
Q 047404 250 PEDSIAMLVSMGFDRNSARQALVQA---RNDINAAT 282 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~~~---~~~~~~A~ 282 (291)
.+|.++.|+++||++.+|.+|+.+. +.|+|..+
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~li 195 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKIARPDASSETLI 195 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 4789999999999999999999987 34565544
No 75
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=76.13 E-value=4 Score=34.50 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.0
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHh-----CCCHHHHHH
Q 047404 250 PEDSIAMLVSMGFDRNSARQALVQA-----RNDINAATN 283 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~~~-----~~~~~~A~~ 283 (291)
.+|.++.|+++||++.+|.+|+.+. +.|+|..+.
T Consensus 164 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir 202 (212)
T 2ztd_A 164 RSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALR 202 (212)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4789999999999999999999876 235654433
No 76
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=74.79 E-value=1.8 Score=28.95 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 262 FDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 262 f~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
|+++..++||..++||+.+|++.|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 578899999999999999999865
No 77
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=74.32 E-value=5.1 Score=26.50 Aligned_cols=37 Identities=8% Similarity=-0.056 Sum_probs=28.7
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 251 EDSIAMLVS-MGFDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 251 ~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
++-|.++.. -|-..+=+.++|..++||.++|+.-.-+
T Consensus 7 ~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 7 LELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444555544 4889999999999999999999975433
No 78
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=73.54 E-value=1.9 Score=30.76 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 047404 263 DRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 263 ~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
+++..++||++++||+.+|++.|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 56778999999999999999865
No 79
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=67.20 E-value=12 Score=32.86 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 047404 248 EPPEDSIAMLVSMGFDRNSARQALVQARNDINAATNILLE 287 (291)
Q Consensus 248 ~~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~ 287 (291)
..+++.++.+..|||++++.++.|+.-..|.-.|+=+|+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ll~ 326 (328)
T 3fe3_A 287 ISDQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLLLG 326 (328)
T ss_dssp CCCHHHHHHHHHTTCCHHHHHHHHHTTCCSHHHHHHHHHT
T ss_pred cccHHHHHHHHHCCCCHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4567889999999999999999999999998888877775
No 80
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=58.10 E-value=2.1 Score=35.64 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=0.0
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHh
Q 047404 250 PEDSIAMLVSMGFDRNSARQALVQA 274 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~~~ 274 (291)
.+|.++.|+++||++.+|.+|+.+.
T Consensus 146 ~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 146 AEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4789999999999999999999876
No 81
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=56.48 E-value=8.1 Score=28.72 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCHHHHHHHHHH----hC---CCHHHHHHHHHh
Q 047404 253 SIAMLVSMGFDRNSARQALVQ----AR---NDINAATNILLE 287 (291)
Q Consensus 253 ~v~~l~~mGf~~~~~~~aL~~----~~---~~~~~A~~~l~~ 287 (291)
.|++..+|||++..++++.++ ++ ..++.-++-|++
T Consensus 30 vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~ 71 (104)
T 2kna_A 30 MVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVN 71 (104)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 678889999999999998876 23 235555555554
No 82
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=56.38 E-value=12 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHhCCCH
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQARNDI 278 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~~~~~ 278 (291)
+.+++++-|.+-|-+.+++.+||++++.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 468999999999999999999999987653
No 83
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=52.91 E-value=4 Score=29.31 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 262 FDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 262 f~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
++++..++||.+++||+.+|++.|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 578889999999999999998864
No 84
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=52.49 E-value=7.9 Score=28.41 Aligned_cols=24 Identities=4% Similarity=0.041 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 262 FDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 262 f~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
++++..++||.+++||..+|++.|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 467888999999999999999865
No 85
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=49.59 E-value=7.3 Score=25.69 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 262 FDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 262 f~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
++++...+||.++ ||..+|++.|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 4678889999999 9999998864
No 86
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=45.87 E-value=19 Score=23.52 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHh
Q 047404 249 PPEDSIAMLVSMGFDRNSARQALVQA 274 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~~~~aL~~~ 274 (291)
+-+.+++-|.+-|.+.+++.+||+++
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 46899999999999999999999874
No 87
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=40.54 E-value=54 Score=22.89 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=32.0
Q ss_pred HHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 251 EDSIAMLVSM-GFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 251 ~~~v~~l~~m-Gf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+|+|+.+... .=.+++-.+|+..++|.+.-|+.-|++.|
T Consensus 15 deaidnilrytnsteqqfleamestggrvriaiakllskq 54 (104)
T 2l3n_A 15 DEAIDNILRYTNSTEQQFLEAMESTGGRVRIAIAKLLSKQ 54 (104)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHTTCHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCCeeehHHHHHHhhc
Confidence 5667776553 44788999999999999999999999866
No 88
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=38.75 E-value=16 Score=32.30 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 047404 247 IEPPEDSIAMLV-SMGFDRNSARQALVQARNDINAATNILL 286 (291)
Q Consensus 247 ~~~~~~~v~~l~-~mGf~~~~~~~aL~~~~~~~~~A~~~l~ 286 (291)
...+.+.++++. .|||+++++.++|+.-..|-..|+=.|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~y~ll 319 (336)
T 3h4j_B 279 SYADSRIVSKLGEAMGFSEDYIVEALRSDENNEVKEAYNLL 319 (336)
T ss_dssp CCCCHHHHHHHHHTTCCCHHHHHHHTTSSSCCSSTTHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345677788874 5999999999999877555444444443
No 89
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=37.95 E-value=22 Score=32.02 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.6
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHhCC
Q 047404 250 PEDSIAMLVSMGFDRNSARQALVQARN 276 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~~~~~ 276 (291)
.++.|+.|.+|||+.+++.+++...-+
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~ 72 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRG 72 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcc
Confidence 477899999999999999999988744
No 90
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=31.04 E-value=10 Score=32.67 Aligned_cols=35 Identities=9% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 251 EDSIAMLVS-MGFDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 251 ~~~v~~l~~-mGf~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
++.|.++.+ -|-..+=+.++|..+|||.|+|+.--
T Consensus 199 ~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F 234 (250)
T 1jkg_B 199 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 234 (250)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555544 48899999999999999999999854
No 91
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=30.74 E-value=10 Score=35.90 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCHHHHHHHHcC-----CCCHHHHHHHHHHhCCCHHHHHHHHH
Q 047404 249 PPEDSIAMLVSM-----GFDRNSARQALVQARNDINAATNILL 286 (291)
Q Consensus 249 ~~~~~v~~l~~m-----Gf~~~~~~~aL~~~~~~~~~A~~~l~ 286 (291)
.++++|++.+.. ||+.++|...|..+++|+++|+..|.
T Consensus 141 l~d~~ldeYL~~Ars~~g~n~EqAL~~L~~~~yDi~~AL~~L~ 183 (482)
T 2xag_B 141 LSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLP 183 (482)
T ss_dssp -------------------------------------------
T ss_pred CCHHHHHHHHHHHHHhcCccHHHHHHHHHHccCCHHHHHHHHh
Confidence 445666665553 79999999999999999999998764
No 92
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=30.71 E-value=30 Score=30.29 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=27.1
Q ss_pred CCHHHHHHHHcCCCCHHH-HHHHHHHh---CCCHHHHHHHH
Q 047404 249 PPEDSIAMLVSMGFDRNS-ARQALVQA---RNDINAATNIL 285 (291)
Q Consensus 249 ~~~~~v~~l~~mGf~~~~-~~~aL~~~---~~~~~~A~~~l 285 (291)
++++...+|+++|+++.+ .++|-+.. .+.+++|++-+
T Consensus 118 ~d~~~~~tl~AlG~~~~kA~rKarke~~r~rr~ierAl~~~ 158 (289)
T 2x9q_A 118 TDVHVAESYEALGDSAIEARRKAVKNIRGVRAKITTTVNEL 158 (289)
T ss_dssp CCSSHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999998775 44444444 57788888763
No 93
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=29.98 E-value=32 Score=31.06 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=26.7
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHH----hC---CCHHHHHHHHHh
Q 047404 250 PEDSIAMLVSMGFDRNSARQALVQ----AR---NDINAATNILLE 287 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~~----~~---~~~~~A~~~l~~ 287 (291)
+.+.|+.-.+|||+++.+++++++ ++ ..++.-++-|++
T Consensus 119 ~~~~v~~~l~mGf~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~ 163 (345)
T 3t6p_A 119 NTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLN 163 (345)
T ss_dssp CSHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHH
T ss_pred cCHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHh
Confidence 456789999999999999998762 33 345555555544
No 94
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=26.77 E-value=53 Score=29.45 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCCHHHHHHHH--cCCCCHHHHHHHHHHh
Q 047404 248 EPPEDSIAMLV--SMGFDRNSARQALVQA 274 (291)
Q Consensus 248 ~~~~~~v~~l~--~mGf~~~~~~~aL~~~ 274 (291)
++|.|++..+. ++||++++++.++.+-
T Consensus 299 ~pd~~~l~~fl~~~~~f~~~rv~~~~~~l 327 (341)
T 3q8k_A 299 EPNEEELIKFMCGEKQFSEERIRSGVKRL 327 (341)
T ss_dssp CCCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 56778877765 7999999999998865
No 95
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=23.20 E-value=35 Score=29.74 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 262 FDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 262 f~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
++++..++||++++||..+|++.|
T Consensus 268 ~e~~~i~~~l~~~~gn~~~aA~~L 291 (304)
T 1ojl_A 268 VEKEVILAALEKTGGNKTEAARQL 291 (304)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 457788899999999999999865
No 96
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=22.22 E-value=47 Score=23.98 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCHHHHHHHHcCC---CCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 249 PPEDSIAMLVSMG---FDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 249 ~~~~~v~~l~~mG---f~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
.+.++++.+- | -+.+++..|.++..+|+|++++-|+++.
T Consensus 36 Is~e~Le~~~--g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e 77 (91)
T 2gpi_A 36 IGQKVLEHLA--AEKINNSEQALSLFEQFRFDIEEQAEKLIEQE 77 (91)
T ss_dssp EEHHHHHHHH--TSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred EEHHHHHHHh--CccCCCHHHHHHHHHHcchhHHHHHHHHHHcc
Confidence 3456666553 5 4788999999999999999999998864
No 97
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=21.66 E-value=1.3e+02 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred HHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Q 047404 255 AMLVSMGFDRNSARQALVQARNDINAATNILLEAQ 289 (291)
Q Consensus 255 ~~l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~~ 289 (291)
+.-+++|++++++++...++ +..+.+.+.++.
T Consensus 190 ~a~v~~Gl~~~~a~~l~~~t---~~G~a~~~~~~~ 221 (280)
T 3tri_A 190 EAAEQLGLTKETAELLTEQT---VLGAARMALETE 221 (280)
T ss_dssp HHHHHTTCCHHHHHHHHHHH---HHHHHHHHHTCS
T ss_pred HHHHHcCCCHHHHHHHHHHH---HHHHHHHHHhcC
Confidence 33456999999999887776 455555555443
No 98
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=21.08 E-value=33 Score=30.11 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=2.9
Q ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHH
Q 047404 260 MGFDRNSARQALVQARNDINAATNIL 285 (291)
Q Consensus 260 mGf~~~~~~~aL~~~~~~~~~A~~~l 285 (291)
.|-++++|+++|.++++++-.|+-.+
T Consensus 255 ~~~~~~~~~~~l~~~~~~~~~a~~~~ 280 (306)
T 1nri_A 255 TDCNKTLAEQTLLEADQNAKLAIMMI 280 (306)
T ss_dssp SCCCC---------------------
T ss_pred hCCCHHHHHHHHHHhCCChHHHHHHH
Confidence 45666666666666666666655543
No 99
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=21.00 E-value=1.1e+02 Score=17.41 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=19.4
Q ss_pred CHHHHHHHHcCCCCHHHHHHHHH
Q 047404 250 PEDSIAMLVSMGFDRNSARQALV 272 (291)
Q Consensus 250 ~~~~v~~l~~mGf~~~~~~~aL~ 272 (291)
.+|-+..|.+-|-+++.-++||.
T Consensus 9 Q~eLL~aLL~SGlsKe~LiqaL~ 31 (32)
T 1g2y_A 9 QTEMLAALLESGLSKEALIQALG 31 (32)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcHHHHHHHhc
Confidence 36778889999999999999873
No 100
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=20.74 E-value=1.4e+02 Score=24.74 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=20.8
Q ss_pred HHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Q 047404 257 LVSMGFDRNSARQALVQARNDINAATNILLEA 288 (291)
Q Consensus 257 l~~mGf~~~~~~~aL~~~~~~~~~A~~~l~~~ 288 (291)
.+.+|+|++++++.+.++ ...+...+.++
T Consensus 190 ~~~~Gl~~~~a~~~~~~~---~~gs~~~~~~~ 218 (247)
T 3gt0_A 190 AVLDGMPRNQAYKFAAQA---VLGSAKMVLET 218 (247)
T ss_dssp HHHTTCCHHHHHHHHHHH---HHHHHHHHHHS
T ss_pred HHHcCCCHHHHHHHHHHH---HHHHHHHHHHc
Confidence 556999999999998877 44555555544
No 101
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=20.28 E-value=52 Score=29.27 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHh
Q 047404 251 EDSIAMLVSMGFDRNSARQALVQA 274 (291)
Q Consensus 251 ~~~v~~l~~mGf~~~~~~~aL~~~ 274 (291)
++.++-|.++|+++++..+.+.++
T Consensus 52 ~~vl~fL~~~G~s~~~i~~iv~~~ 75 (343)
T 3mva_O 52 QDLKMFLLSKGASKEVIASIISRY 75 (343)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 566777778888888887777665
No 102
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=20.28 E-value=81 Score=26.77 Aligned_cols=38 Identities=8% Similarity=0.364 Sum_probs=27.1
Q ss_pred HHHHHH-HHcCCCCHHHHHHHHHHh-------CCCHHHHHHHHHhc
Q 047404 251 EDSIAM-LVSMGFDRNSARQALVQA-------RNDINAATNILLEA 288 (291)
Q Consensus 251 ~~~v~~-l~~mGf~~~~~~~aL~~~-------~~~~~~A~~~l~~~ 288 (291)
.++++. +.+|||+++++.+++.++ -.+++..+++|.+.
T Consensus 148 ~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~ 193 (270)
T 3m66_A 148 KENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNV 193 (270)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHH
Confidence 556775 478999999999988876 23566666676543
Done!