BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047406
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NPC9|BIN3D_ARATH Probable RNA methyltransferase At5g51130 OS=Arabidopsis thaliana
GN=At5g51130 PE=2 SV=1
Length = 318
Score = 344 bits (883), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 168/272 (61%), Positives = 205/272 (75%), Gaps = 6/272 (2%)
Query: 20 QLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQ 79
Q KK+K ++V+PFGNY+NYYGYRI +EDPR KVLKKEWFEGKDCLDIGCNSGI+TI
Sbjct: 52 QSKKKKNQEVYPFGNYRNYYGYRISNDTDEDPRLKVLKKEWFEGKDCLDIGCNSGIMTIH 111
Query: 80 IAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL-EKNV 138
IA+KF CRSILG+DID++R+ DA+WHLRK VR +++ K S E + G E +V
Sbjct: 112 IAKKFGCRSILGVDIDTSRIEDAHWHLRKFVRMQNSTKPSEKKSSSEGADGVHGSKEPSV 171
Query: 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG 198
+ + E KA S ++L IVSF++ENFV R+ + YD ILCLSVTKW+HLNWG
Sbjct: 172 SLSNGEAKADS----AETKDLSQIVSFQKENFVQTRNLDDNRYDTILCLSVTKWVHLNWG 227
Query: 199 DDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILL 258
DDGLITLF +IW+LL+PGGIFV+EPQPW SYE NRRVSETTA N++ I L P FQEILL
Sbjct: 228 DDGLITLFSKIWRLLQPGGIFVMEPQPWKSYENNRRVSETTAMNYRTIVLRPDRFQEILL 287
Query: 259 DKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
DKIGFRTVED+ S LS + GF+R I F+K
Sbjct: 288 DKIGFRTVEDLTS-SLSGASKGFDRQILAFQK 318
>sp|Q7L2J0|MEPCE_HUMAN 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE
PE=1 SV=1
Length = 689
Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 161/289 (55%), Gaps = 24/289 (8%)
Query: 18 AQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIIT 77
A KK++ K F +GNY YYGYR ED R +VLK EWF G+D LD+GCN G +T
Sbjct: 403 AAGFKKQQRK--FQYGNYCKYYGYR--NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLT 458
Query: 78 IQIAQKFNCRSILGIDIDSNRVADAYWHLRKIV--------RTEHNEKRRANASRVEVIE 129
+ IA K+ ++G+DIDS + A ++R + +T + +
Sbjct: 459 LSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 518
Query: 130 KGDGLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD------SPEKYYD 182
K ++TA++ A A+ ++F + V F N+V RD +PE YD
Sbjct: 519 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPE--YD 576
Query: 183 AILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATN 242
+LCLS+TKW+HLNWGD+GL +F RI++ LRPGGI VLEPQPW SY K + ++ET N
Sbjct: 577 VVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKN 636
Query: 243 FQNIKLYPKEFQEILLDK-IGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
+ I+L P++F L +GF + E + + ++ GF RP++LF K
Sbjct: 637 YYRIQLKPEQFSSYLTSPDVGFSSYELVAT--PHNTSKGFQRPVYLFHK 683
>sp|Q8K3A9|MEPCE_MOUSE 7SK snRNA methylphosphate capping enzyme OS=Mus musculus GN=Mepce
PE=1 SV=2
Length = 666
Score = 184 bits (466), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 162/292 (55%), Gaps = 37/292 (12%)
Query: 19 QQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITI 78
QQLK F +GNY YYGYR ED R +VLK EWF+G+D LD+GCN G +T+
Sbjct: 386 QQLK-------FQYGNYCKYYGYR--NPSCEDVRLRVLKPEWFQGRDVLDLGCNVGHLTL 436
Query: 79 QIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE------------ 126
IA K+ ++G+DID + A R+ +R +E+ R A E
Sbjct: 437 SIACKWGPARMVGLDIDPRLIHSA----RQNIRHYLSEELRLQAQTSEGDPGTEGEEGTI 492
Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS------PEK 179
+ K ++TA++ A A+ ++F + V F N+V RD PE
Sbjct: 493 TVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDELVDAQRPE- 551
Query: 180 YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT 239
YD +LC S+TKW+HLNWGD+GL +F RI++ LRPGGI VLEPQPW SY K + ++ET
Sbjct: 552 -YDVVLCFSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYCKRKSLTETI 610
Query: 240 ATNFQNIKLYPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
N+ I+L P++F L ++GF + E + + +++ GF RP++LF K
Sbjct: 611 YKNYFRIQLKPEQFSSYLTSPEVGFSSYELVAT--PNNTSRGFQRPVYLFHK 660
>sp|A3KQ55|MEPCE_DANRE 7SK snRNA methylphosphate capping enzyme OS=Danio rerio GN=mepce
PE=2 SV=2
Length = 645
Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 155/268 (57%), Gaps = 27/268 (10%)
Query: 46 GLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105
G++EDPR +V+ +WF GKD LD+GCN+G +T+ IA+ + SI+G+DID + + A +
Sbjct: 376 GMSEDPRIRVMNPDWFRGKDVLDLGCNTGHLTLFIAKNWRPASIVGLDIDGSLIHAARQN 435
Query: 106 LRKI---VRTEHNEKRRAN--ASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSP------ 154
+R V+ +H+ + N A R EV G+ +K+ T+ ++ + P
Sbjct: 436 IRHYLSEVQVQHSRRSGENTKADRGEV--SGEEKDKDKTSKHSFPVSLRISRGPIAGPPL 493
Query: 155 AERNLFDI--------VSFKQENFVHGRD----SPEKYYDAILCLSVTKWIHLNWGDDGL 202
E N + V+F + N+V D + + YD ILCLSVTKW+HLNWGD GL
Sbjct: 494 PETNTHSLPPGDFPANVTFIKGNYVLESDVLLQTQREEYDVILCLSVTKWVHLNWGDAGL 553
Query: 203 ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG 262
F R++K LRPGG+F+LEPQPW SY K ++++E N+ +I+L P +F L ++G
Sbjct: 554 KRFFHRVYKHLRPGGLFILEPQPWSSYNKRKKLTEAICKNYHSIRLKPDQFSSFLTTEVG 613
Query: 263 FRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
F + E IG+ + GF RPI L+ K
Sbjct: 614 FSSYELIGTS--QNYSKGFQRPISLYHK 639
>sp|Q9U2R0|BIN3D_CAEEL Probable RNA methyltransferase Y17G7B.18 OS=Caenorhabditis elegans
GN=Y17G7B.18 PE=3 SV=1
Length = 378
Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 27/290 (9%)
Query: 9 KVEEEEKGEAQQLKKRKG--KDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDC 66
++ +EEK A+ K++ + +GN+ YYG R+ G D R V +K+WFE K
Sbjct: 94 QLSKEEKSAAENRKQKTEYFNKKYRYGNFDRYYGIRLNPG-ESDKRLSVFQKDWFEHKQA 152
Query: 67 LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVE 126
LDIGCN+G +T+ IA+ F+ R I+GIDID + + A ++R E + AS
Sbjct: 153 LDIGCNAGFLTLSIAKDFSPRRIIGIDIDEHLIGVARKNIRHYCDHETEVSGKFPASF-- 210
Query: 127 VIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD------SPEKY 180
G++ + + E P D + FK+EN+V D PE
Sbjct: 211 ------GVQFGTVSQRNEAPRSFSTKFP------DNIWFKKENYVLESDEMLDMIQPE-- 256
Query: 181 YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTA 240
+D IL LS+TKWIHLNWGDDG+ F R + L PGG ++EPQ + SY+K ++SE
Sbjct: 257 FDVILALSITKWIHLNWGDDGMRRFFRRAYAQLHPGGRLIIEPQAFDSYKKRAKMSEELK 316
Query: 241 TNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
N+ I+ P++F+ L++ +GF +VE +G G S GF RPI ++ K
Sbjct: 317 ANYSKIEFKPEDFEMWLIETVGFESVEKLGVVGAKSK--GFERPIDVYLK 364
>sp|Q9VNH1|BN3D2_DROME Probable RNA methyltransferase CG1239 OS=Drosophila melanogaster
GN=CG1239 PE=2 SV=2
Length = 300
Score = 150 bits (380), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 108/302 (35%), Positives = 148/302 (49%), Gaps = 63/302 (20%)
Query: 7 ENKVEEEEKGEAQQLKKR--------KGKDV-FPFGNYKNYYGYRIGQGLNEDPRFKVL- 56
E+ VE + AQ KKR + KD+ F +GNYK+YYG RI D R VL
Sbjct: 43 ESNVEATSRPPAQSPKKRLHLNGKPMQNKDLNFKYGNYKHYYGKRILNKDFHDIRLDVLG 102
Query: 57 -KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHN 115
+ + F K LDIGCNSG ++IQIA+KF +S++G+DID + DA +T +
Sbjct: 103 TQPDLFRNKQLLDIGCNSGHLSIQIARKFEVKSLVGLDIDRGLINDAQ-------KTVSH 155
Query: 116 EKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD 175
KR A G G+ + F N+V D
Sbjct: 156 LKRHATP--------GQGIPH--------------------------IQFVHGNYVLEDD 181
Query: 176 ------SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSY 229
P+ +D ILCLSVTKWIHLN+ D GL F R++ LRPGG +LEPQ + Y
Sbjct: 182 VLLEIERPQ--FDVILCLSVTKWIHLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGY 239
Query: 230 EKNRRVSETTATNFQNIKLYPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLF 288
++ +++SE N+ IK P F E LL ++GF ++ +G K GF RPI +F
Sbjct: 240 KRRKKLSEQIRDNYNAIKFRPDHFTEYLLSPEVGFAEMKLMGIP--EHCKVGFKRPIQIF 297
Query: 289 RK 290
K
Sbjct: 298 TK 299
>sp|Q9Y7L2|BIN3D_SCHPO Probable RNA methyltransferase C2A9.10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC2A9.10 PE=3 SV=1
Length = 268
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 12/230 (5%)
Query: 30 FPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSI 89
F GNY +YY R G + DPR K L F LDIGCN+G ++ QIA F +
Sbjct: 4 FQHGNYHSYYSMRGGTSI-IDPRLKCLPDSLFYEASVLDIGCNNGTVSAQIASIFGASFV 62
Query: 90 LGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAIS 149
LG+DID + A HL + + R S VE D ++ ++ I
Sbjct: 63 LGLDIDHVLIQKARKHLEFV--SSRIGPVRNPGSIVE-----DQFNYYPISSIKKFSRIP 115
Query: 150 RNCSPA--ERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFM 207
P ++N + F+ +F+ R ++ + IL LSV+KW+HLN D+G+I F
Sbjct: 116 VQLQPPLNKQNFPHNIEFETADFL--RWESKRKFKIILALSVSKWVHLNNHDEGIIKFFG 173
Query: 208 RIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEIL 257
+I LL G+ +LEPQ W SY K + +N+K+ P F+ +L
Sbjct: 174 KISSLLETNGVLILEPQGWDSYLKAAKKISVFNQTPENLKIQPDAFEHLL 223
>sp|Q7K480|BN3D1_DROME Probable RNA methyltransferase bin3 OS=Drosophila melanogaster
GN=bin3 PE=1 SV=1
Length = 1367
Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 163 VSFKQENFVHGRDS----PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218
V F+ N+V +S + YD ILCLSVTKWIHLN+GD+GL F R++ LRPGG
Sbjct: 982 VFFRHTNYVLKDESLMASDTQQYDLILCLSVTKWIHLNFGDNGLKMAFKRMFNQLRPGGK 1041
Query: 219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILL-DKIGFRTVEDIGSGGLSSS 277
+LE Q W SY+K + ++ N++ I+ +P +F E LL ++GF +G
Sbjct: 1042 LILEAQNWASYKKKKNLTPEIYNNYKQIEFFPNKFHEYLLSSEVGFSHSYTLGVP--RHM 1099
Query: 278 KTGFNRPIFLFRK 290
GF RPI L+ K
Sbjct: 1100 NKGFCRPIQLYAK 1112
Score = 64.7 bits (156), Expect = 8e-10, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 30 FPFGNYKNYYGYRIGQGLNE--DPRFKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKFN 85
+ +GN+ Y +R +NE D R +V ++ E FE KD LDIGCN G +TI +A+
Sbjct: 787 YRYGNFDRYVDFR---QMNEFRDVRLQVFQRHVELFENKDILDIGCNVGHMTITVARHLA 843
Query: 86 CRSILGIDIDSNRVADAYWHLRKIVRTEHNEK 117
++I+GIDID VA A +L VR EK
Sbjct: 844 PKTIVGIDIDRELVARARRNLSIFVRIPKEEK 875
>sp|Q9VZD2|BN3D3_DROME Probable RNA methyltransferase CG11342 OS=Drosophila melanogaster
GN=CG11342 PE=3 SV=1
Length = 238
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 91/221 (41%), Gaps = 67/221 (30%)
Query: 32 FGNYKNYYGY-----RIGQGLNEDPRFKVLK-------KEWFEGKDCLDIGCNSGIITIQ 79
+GN+ NYY + R+ + D L+ K +F LD+GCN G++T Q
Sbjct: 13 YGNFFNYYQFSSAAERVKLLPDADIWLPALEDGETQKDKPYF----ILDVGCNCGVLT-Q 67
Query: 80 IAQKF------NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG 133
+ K+ +LG+DID + A +E NE
Sbjct: 68 LMHKYLEERLHRSVKVLGVDIDPRLIQRA---------SEENES---------------- 102
Query: 134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWI 193
K +S C ++ D +F+ ++ EK+ DAI C S+T WI
Sbjct: 103 -----------PKDVSYACV----DVLDDEAFESVKTYMEVNNLEKF-DAICCYSITMWI 146
Query: 194 HLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRR 234
HLN D GL F++ KL + V+EPQPW Y+K R
Sbjct: 147 HLNHHDQGL-RFFLQ--KLSNLAELLVVEPQPWKCYQKAER 184
>sp|Q7T0L7|BN3D2_XENLA Pre-miRNA 5'-monophosphate methyltransferase OS=Xenopus laevis
GN=bcdin3d PE=2 SV=1
Length = 255
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 81/213 (38%), Gaps = 43/213 (20%)
Query: 31 PFGNYKNYYGYRIGQG----LNEDPRFKVLKKEWFEGKDC-----LDIGCNSGIITIQIA 81
P+GN+ NYY + + L + K+ +K LD+GCN+G +++ +
Sbjct: 16 PYGNFPNYYSFNPPENRISLLPAELLHKLFRKPAESDSSTQPLLGLDVGCNTGDLSVAL- 74
Query: 82 QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141
Y HL TE + K +S V V ++ ++
Sbjct: 75 ---------------------YNHL-----TEPHSK----SSDVPVHFLCCDIDPDLITR 104
Query: 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG 201
S A ++ D + + + +D C+SVT WIHLN+GD G
Sbjct: 105 ARASNPFPDFISYATLDIMDSSAVRGPVNDFLQQFARSTFDIAFCMSVTMWIHLNYGDQG 164
Query: 202 LITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRR 234
L+T + L ++EPQPW Y R
Sbjct: 165 LVTFLGHLANLC---DYLLVEPQPWKCYRSAAR 194
>sp|Q5RFI3|BN3D2_PONAB Pre-miRNA 5'-monophosphate methyltransferase OS=Pongo abelii
GN=BCDIN3D PE=2 SV=1
Length = 292
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 49/271 (18%)
Query: 31 PFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKD-----CLDIGCNSGIITIQIAQKFN 85
PFGN+ +Y + + ++L++ + E + LD+GCNSG +++ + + F
Sbjct: 30 PFGNFPHYSRFHPPEQRLRLLPPELLRQLFPESPENGPILGLDVGCNSGDLSVALYKHF- 88
Query: 86 CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEK 145
L + D +DA R + + + + + + K
Sbjct: 89 ----LSLP-DGKTCSDASREFRLLCCDIDPVLVKRAEKECPFPDALTFITLDFMNQRTRK 143
Query: 146 KAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITL 205
+S S R++FDI C+S+T WIHLN GD GL
Sbjct: 144 VLLSSFLSQFGRSVFDIG---------------------FCMSITMWIHLNHGDHGLWEF 182
Query: 206 FMRIWKLLRPGGIFVLEPQPWVSY----EKNRRVSETTATNFQNIKL---YPKEFQEILL 258
R+ L R ++EPQPW Y + R++ +F ++ + P + +IL
Sbjct: 183 LARLSSLCR---YLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLTIRGDMPNQIVQILT 239
Query: 259 DKIGFRTVEDIGSGGLSSSKTGFNRPIFLFR 289
G + G+ T ++R + LFR
Sbjct: 240 QDHGMELICCFGN-------TSWDRSLLLFR 263
>sp|Q91YP1|BN3D2_MOUSE Pre-miRNA 5'-monophosphate methyltransferase OS=Mus musculus
GN=Bcdin3d PE=2 SV=1
Length = 285
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 112/306 (36%), Gaps = 83/306 (27%)
Query: 10 VEEEEKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQ----GLNEDPRFKVLKKEWFEGKD 65
VEEE G + PFGN+ +Y + + L + ++ E E +
Sbjct: 16 VEEEHPGALE-------PGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFPPEGPEKRP 68
Query: 66 CL--DIGCNSGIITIQIAQKF-------NCRS------ILGIDIDSNRVADAYWHLRKIV 110
L D+GCNSG +++ + + F C IL DID V
Sbjct: 69 ILGLDVGCNSGDLSVALYKHFLSPRDGETCSGASRELRILCCDIDP-------------V 115
Query: 111 RTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENF 170
E E+ + I ++ + K +S S R++FD+V
Sbjct: 116 LVERAERDCPFPEALTFITL------DIMDQESRKVPLSSFLSQFGRSVFDMV------- 162
Query: 171 VHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSY- 229
C+SVT WIHLN GD GL + L ++EPQPW Y
Sbjct: 163 --------------FCMSVTMWIHLNHGDRGLCEFLAHVSSLC---SYLLVEPQPWKCYR 205
Query: 230 ---EKNRRVSETTATNFQNIKL---YPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNR 283
+ R++ + +F+++ + K+ IL G G+ T ++R
Sbjct: 206 AAARRLRKLGLHSFDHFRSLAIRGDMAKQIVRILTQDHGMELACCFGN-------TSWDR 258
Query: 284 PIFLFR 289
+ LFR
Sbjct: 259 SLLLFR 264
>sp|D4ABH7|BN3D2_RAT Pre-miRNA 5'-monophosphate methyltransferase OS=Rattus norvegicus
GN=Bcdin3d PE=3 SV=1
Length = 285
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 70/182 (38%), Gaps = 46/182 (25%)
Query: 87 RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASR-------------VEVIEKGDG 133
R ILG+D+ N D L K + H+ + + SR VE E G
Sbjct: 67 RPILGLDVGCNS-GDLSMALYKHFLSPHDGETSSGTSRELRLLCCDIDPVLVERAENGCR 125
Query: 134 LEKNVT------AAQEEKKA-ISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC 186
+T QE +K +S S R++FDIV C
Sbjct: 126 FPDALTFITLDIMDQESRKVPLSSFLSQFGRSVFDIV---------------------FC 164
Query: 187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSY-EKNRRVSETTATNFQN 245
+SVT WIHLN GD GL + L ++EPQPW Y RR+ + NF +
Sbjct: 165 MSVTMWIHLNHGDRGLCEFLAHVSSLC---SYLLVEPQPWKCYRAAARRLRKLGLHNFDH 221
Query: 246 IK 247
+
Sbjct: 222 FR 223
>sp|A8E7D2|BN3D2_DANRE Pre-miRNA 5'-monophosphate methyltransferase OS=Danio rerio
GN=bcdin3d PE=3 SV=2
Length = 254
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 111/275 (40%), Gaps = 56/275 (20%)
Query: 31 PFGNYKNYYGYRIGQG-LNEDPRFKVLKKEWFEGKD-----CLDIGCNSGIITIQIAQKF 84
P+GN+ NYY + + L+ P +L+ F D LD+GCNSG +++ +
Sbjct: 20 PYGNFINYYTFNPPENRLSLIPE-ALLQNIGFTSGDGERVLMLDVGCNSGDLSVAL---- 74
Query: 85 NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEE 144
Y HL E +++ R E+ G L++++ +
Sbjct: 75 ------------------YKHLLN------KEACTSDSPRQELYMLGFDLDQDLILRAQT 110
Query: 145 KKAISRNCSPAERNLFDIVSFKQ--ENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL 202
+N ++ D + + F+ G+ +++ + C +VT W+HLN GD
Sbjct: 111 SNPFPQNIQFIPLDITDDTESRAVLQAFL-GKFGCSRFHLST-CFAVTMWVHLNHGDAAF 168
Query: 203 ITLFMRIWKLLRPGGIFVLEPQPWVSY-EKNRRVSETTATNFQNIKL------YPKEFQE 255
++L R L +LE QPW Y RR+ + ++F + K +E
Sbjct: 169 LSLLSR---LASHSEYLLLEAQPWKCYRSAARRLRKLGRSDFDHFKALKIRGDMAAHARE 225
Query: 256 ILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290
L + V+ G+ T ++R + LFR+
Sbjct: 226 HLEKQCSMELVQCFGN-------TSWDRSLLLFRR 253
>sp|Q29S19|BN3D2_BOVIN Pre-miRNA 5'-monophosphate methyltransferase OS=Bos taurus
GN=BCDIN3D PE=2 SV=1
Length = 292
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 109/288 (37%), Gaps = 49/288 (17%)
Query: 14 EKGEAQQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDC-----LD 68
EK A++ + PFGN+ +Y + + ++L++ + + + LD
Sbjct: 13 EKTAAEEKPRVLEPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRRLFPQSPETRPILGLD 72
Query: 69 IGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI 128
+GCNSG +++ + + F +D++R V E EK + I
Sbjct: 73 VGCNSGDLSVALYKHFLSLHDGETCLDASRELHLLCCDIDPVLVERAEKECPFPDGLTFI 132
Query: 129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS 188
+ + K +S S R++FDI C+S
Sbjct: 133 TL------DFMNQRTRKVLLSSFLSQFGRSVFDIG---------------------FCMS 165
Query: 189 VTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSY-EKNRRVSETTATNFQNIK 247
VT WIHLN GD GL + L R ++EPQPW Y RR+ + +F + +
Sbjct: 166 VTMWIHLNHGDQGLWEFLAHLSSLCR---YLLVEPQPWKCYRAAARRLRKLGLHDFDHFR 222
Query: 248 L------YPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFR 289
+ +IL G V G+ T ++R + LFR
Sbjct: 223 SLAIRGDMASQIVQILTQDHGMELVCCFGN-------TKWDRSLLLFR 263
>sp|Q7Z5W3|BN3D2_HUMAN Pre-miRNA 5'-monophosphate methyltransferase OS=Homo sapiens
GN=BCDIN3D PE=1 SV=1
Length = 292
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 107/277 (38%), Gaps = 61/277 (22%)
Query: 31 PFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKD-----CLDIGCNSGIITIQIAQKFN 85
PFGN+ +Y + + ++L++ + E + LD+GCNSG +++ + + F
Sbjct: 30 PFGNFPHYSRFHPPEQRLRLLPPELLRQLFPESPENGPILGLDVGCNSGDLSVALYKHF- 88
Query: 86 CRSILGIDIDSNRVADAYWHLRKI------VRTEHNEKRRANASRVEVIEKGDGLEKNVT 139
L + D +DA R + V + EK + I +
Sbjct: 89 ----LSLP-DGETCSDASREFRLLCCDIDPVLVKRAEKECPFPDALTFITL------DFM 137
Query: 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGD 199
+ K +S S R++FDI C+S+T WIHLN GD
Sbjct: 138 NQRTRKVLLSSFLSQFGRSVFDIG---------------------FCMSITMWIHLNHGD 176
Query: 200 DGLITLFMRIWKLLRPGGIFVLEPQPWVSY----EKNRRVSETTATNFQNIKL---YPKE 252
GL + L ++EPQPW Y + R++ +F ++ + P +
Sbjct: 177 HGLWEFLAHLSSLCH---YLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAIRGDMPNQ 233
Query: 253 FQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFR 289
+IL G + G+ T ++R + LFR
Sbjct: 234 IVQILTQDHGMELICCFGN-------TSWDRSLLLFR 263
>sp|A5IN97|PRMA_THEP1 Ribosomal protein L11 methyltransferase OS=Thermotoga petrophila
(strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=prmA PE=3
SV=1
Length = 264
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 40 GYRIGQGLNEDPRFKV--LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G GL+ R V LKK EG LD+GC +GI+ I A+K ++ +D+D
Sbjct: 105 GVAFGTGLHPTTRMSVFFLKKYLKEGNTVLDVGCGTGILAIA-AKKLGASQVVAVDVDEQ 163
Query: 98 RVADAYWHLRK 108
V A ++RK
Sbjct: 164 AVEVAEENVRK 174
>sp|B1L841|PRMA_THESQ Ribosomal protein L11 methyltransferase OS=Thermotoga sp. (strain
RQ2) GN=prmA PE=3 SV=1
Length = 264
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 40 GYRIGQGLNEDPRFKV--LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G GL+ R V LKK EG LD+GC +GI+ I A+K ++ +D+D
Sbjct: 105 GVAFGTGLHPTTRMSVFFLKKYLKEGNTVLDVGCGTGILAIA-AKKLGASQVVAVDVDEQ 163
Query: 98 RVADAYWHLRK 108
V A ++RK
Sbjct: 164 AVEVAEENVRK 174
>sp|Q9X0G8|PRMA_THEMA Ribosomal protein L11 methyltransferase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=prmA PE=3 SV=1
Length = 264
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 40 GYRIGQGLNEDPRFKV--LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G GL+ R V LKK EG LD+GC +GI+ I A+K ++ +D+D
Sbjct: 105 GVAFGTGLHPTTRMSVFFLKKYLKEGNTVLDVGCGTGILAIA-AKKLGASRVVAVDVDEQ 163
Query: 98 RVADAYWHLRK 108
V A ++RK
Sbjct: 164 AVEVAEENVRK 174
>sp|C4Z0Q0|PRMA_EUBE2 Ribosomal protein L11 methyltransferase OS=Eubacterium eligens
(strain ATCC 27750 / VPI C15-48) GN=prmA PE=3 SV=1
Length = 318
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 40 GYRIGQGLNEDPRF--KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G G +E R K L+K +G + LD+GC SGI+++ +A K+ + G D+D N
Sbjct: 148 GTAFGTGSHETTRMVIKQLQKYVKDGDEVLDVGCGSGILSV-VALKYGAKHAFGTDLDPN 206
Query: 98 RVADAYWHLRKIVRTEHNEKRRANASRVEVIE 129
+ I E+ E+ + ++EVIE
Sbjct: 207 AI---------IASEENAEQNNIDKKQLEVIE 229
>sp|A9KKT8|PRMA_CLOPH Ribosomal protein L11 methyltransferase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=prmA PE=3 SV=1
Length = 333
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 19 QQLKKRKGKDVFPFGNYKNYYGYRIGQGLNEDPRFKVL--KKEWFEGKDCLDIGCNSGII 76
++L++RK D+ + G G G +E + +L KK G LD+GC SGI+
Sbjct: 132 EKLEERKETDLV----IEIDPGTAFGTGAHETTKLCILNIKKYMQPGATLLDVGCGSGIL 187
Query: 77 TIQIAQKFNCRSILGIDIDSNRVA 100
TI I +K ++ + IDID N V+
Sbjct: 188 TI-IGRKLGAKTAVAIDIDENAVS 210
>sp|A6LJG3|PRMA_THEM4 Ribosomal protein L11 methyltransferase OS=Thermosipho
melanesiensis (strain BI429 / DSM 12029) GN=prmA PE=3
SV=1
Length = 258
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 40 GYRIGQGLNEDPRFK--VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G GL+ + +LKK +G D LD+GC SGI++I +A+K +L +D D
Sbjct: 106 GLAFGTGLHTTTKLAATLLKKYLRQGMDVLDLGCGSGILSI-LAKKLGASGVLAVDNDKM 164
Query: 98 RVADAYWHLRK 108
V A ++ K
Sbjct: 165 AVESAIENVEK 175
>sp|B7IFP7|PRMA_THEAB Ribosomal protein L11 methyltransferase OS=Thermosipho africanus
(strain TCF52B) GN=prmA PE=3 SV=1
Length = 260
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 40 GYRIGQGLNEDPRF--KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G GL++ + K LKK G D LD+GC S I++I +A+K +LG+D D
Sbjct: 108 GLAFGTGLHDTTKLSAKFLKKYLRPGMDVLDLGCGSAILSI-LAKKLGADRVLGVDNDPL 166
Query: 98 RVADA 102
V A
Sbjct: 167 AVEAA 171
>sp|A4G8P4|PRMA_HERAR Ribosomal protein L11 methyltransferase OS=Herminiimonas
arsenicoxydans GN=prmA PE=3 SV=1
Length = 309
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G LD GC SGI+ + IA+K + +++GIDI
Sbjct: 142 GLAFGTGSHPTTR---LCMEWLEAHAPIGLSVLDYGCGSGILAM-IAKKLDADTVVGIDI 197
Query: 95 DSNRVADAYWHLRK 108
D + A ++ +
Sbjct: 198 DPQAIQSAVFNTER 211
>sp|Q46XA5|PRMA_CUPPJ Ribosomal protein L11 methyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=prmA PE=3
SV=1
Length = 297
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L +W E G+ LD GC SGI+ I +A+K LGIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMQWLEQNLKAGETVLDYGCGSGILAI-VAKKLGAGDTLGIDI 196
Query: 95 DSNRV 99
D N V
Sbjct: 197 DPNAV 201
>sp|B4E5V2|PRMA_BURCJ Ribosomal protein L11 methyltransferase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=prmA PE=3 SV=1
Length = 300
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAI-LAKKCGANPVIGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|B1JVC0|PRMA_BURCC Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain MC0-3) GN=prmA PE=3 SV=1
Length = 300
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAI-LAKKCGANPVIGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|O86951|PRMA_THENE Ribosomal protein L11 methyltransferase OS=Thermotoga neapolitana
GN=prmA PE=3 SV=2
Length = 264
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 40 GYRIGQGLNEDPRFKVL--KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G GL+ + VL KK +G +D+GC +GI+ I +A+K +L +D+D
Sbjct: 105 GVAFGTGLHPTTQMSVLFLKKYLKKGDRVVDVGCGTGILAI-VAKKLGASYVLAVDVDEQ 163
Query: 98 RVADAYWHLRK 108
V A +++K
Sbjct: 164 AVEVAKENVQK 174
>sp|A0K4C9|PRMA_BURCH Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain HI2424) GN=prmA PE=3 SV=1
Length = 300
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAI-LAKKCGANPVIGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|Q1BZC1|PRMA_BURCA Ribosomal protein L11 methyltransferase OS=Burkholderia cenocepacia
(strain AU 1054) GN=prmA PE=3 SV=1
Length = 300
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAI-LAKKCGANPVIGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|Q39JS9|PRMA_BURS3 Ribosomal protein L11 methyltransferase OS=Burkholderia sp. (strain
383) GN=prmA PE=3 SV=1
Length = 300
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAI-LAKKCGANPVIGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|B7VM52|PRMA_VIBSL Ribosomal protein L11 methyltransferase OS=Vibrio splendidus
(strain LGP32) GN=prmA PE=3 SV=1
Length = 295
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 19/95 (20%)
Query: 55 VLKKEWFEGKD-----CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI 109
L EW EG D +D GC SGI+ I A K ++GIDID + +
Sbjct: 147 ALCLEWLEGLDLTGKTVIDFGCGSGILAIA-AIKLGAAKVVGIDIDP----------QAL 195
Query: 110 VRTEHNEKRRANASRVEVI---EKGDGLEKNVTAA 141
+ ++ N +R A ++EV ++ +GL +V A
Sbjct: 196 LASKDNAQRNGVAEQLEVFLPQDQPEGLLADVVVA 230
>sp|Q57060|Y095_HAEIN Uncharacterized protein HI_0095 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0095 PE=4 SV=1
Length = 251
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANAS 123
K L++ CN G I +A++F C I G+D+D N +A A ++ E +RANA
Sbjct: 40 KKVLEVACNMGTTAIGLAKQFGCH-IEGVDLDENALAKAQANIEANGLQEKIHVQRANAM 98
Query: 124 RV 125
++
Sbjct: 99 KL 100
>sp|B1YSW5|PRMA_BURA4 Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria
(strain MC40-6) GN=prmA PE=3 SV=1
Length = 300
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAI-LARKCGANPVVGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|A9AI41|PRMA_BURM1 Ribosomal protein L11 methyltransferase OS=Burkholderia multivorans
(strain ATCC 17616 / 249) GN=prmA PE=3 SV=1
Length = 300
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAI-LAKKCGANPVVGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|Q0BIF9|PRMA_BURCM Ribosomal protein L11 methyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=prmA PE=3 SV=1
Length = 300
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVKPGQSVLDYGCGSGILAI-LARKCGANPVVGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|B2UCS1|PRMA_RALPJ Ribosomal protein L11 methyltransferase OS=Ralstonia pickettii
(strain 12J) GN=prmA PE=3 SV=1
Length = 298
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K +G+DI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQHVHPGERTLDYGCGSGILAI-VAKKLGAGETVGVDI 196
Query: 95 DSNRV 99
D N V
Sbjct: 197 DPNAV 201
>sp|A4JBD7|PRMA_BURVG Ribosomal protein L11 methyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=prmA PE=3 SV=1
Length = 300
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K ++GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQTVKPGQSVLDYGCGSGILAI-LARKCGADPVIGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|Q1LIT8|PRMA_RALME Ribosomal protein L11 methyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=prmA PE=3 SV=1
Length = 304
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L +W E G+ LD GC SGI+ I +A+K +GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMQWLEANVRAGETVLDYGCGSGILAI-VAKKLGAGDTVGIDI 196
Query: 95 DSNRV 99
D N V
Sbjct: 197 DPNAV 201
>sp|B5FC65|PRMA_VIBFM Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
MJ11) GN=prmA PE=3 SV=1
Length = 294
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
EGK +D GC SGI+ I A K ++GIDID + I+ ++ N R
Sbjct: 158 LEGKTVVDFGCGSGILAIA-AIKLGAAKVIGIDIDP----------QAILASKDNATRNG 206
Query: 121 NASRVEVI---EKGDGLEKNVTAA 141
A ++E+ ++ +GL +V A
Sbjct: 207 VADQIELYLPQDQPEGLIADVVVA 230
>sp|Q5E263|PRMA_VIBF1 Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=prmA PE=3 SV=1
Length = 294
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRA 120
EGK +D GC SGI+ I A K ++GIDID + I+ ++ N R
Sbjct: 158 LEGKTVVDFGCGSGILAIA-AIKLGAAKVIGIDIDP----------QAILASKDNATRNG 206
Query: 121 NASRVEVI---EKGDGLEKNVTAA 141
A ++E+ ++ +GL +V A
Sbjct: 207 VADQIELYLPQDQPEGLIADVVVA 230
>sp|B3R6K3|PRMA_CUPTR Ribosomal protein L11 methyltransferase OS=Cupriavidus taiwanensis
(strain R1 / LMG 19424) GN=prmA PE=3 SV=1
Length = 297
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L +W E G+ LD GC SGI+ I +A+K +GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMQWLEQNLTPGETVLDYGCGSGILAI-VARKLGAGDTVGIDI 196
Query: 95 DSNRV 99
D N V
Sbjct: 197 DPNAV 201
>sp|A6T2B6|PRMA_JANMA Ribosomal protein L11 methyltransferase OS=Janthinobacterium sp.
(strain Marseille) GN=prmA PE=3 SV=1
Length = 310
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G LD GC SGI+ + +A K ++GIDI
Sbjct: 142 GLAFGTGSHPTTR---LCMEWLEAHPPVGLSVLDYGCGSGILAM-VAAKLGSTDVIGIDI 197
Query: 95 DSNRVADAYWHLRK 108
D + A ++ +
Sbjct: 198 DPQAIKSALFNTER 211
>sp|Q0K6X3|PRMA_CUPNH Ribosomal protein L11 methyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=prmA PE=3 SV=1
Length = 300
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L +W E G+ LD GC SGI+ I +A+K +GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMQWLEQNLKPGETVLDYGCGSGILAI-VARKLGAGDTVGIDI 196
Query: 95 DSNRV 99
D N V
Sbjct: 197 DPNAV 201
>sp|B9K9N3|PRMA_THENN Ribosomal protein L11 methyltransferase OS=Thermotoga neapolitana
(strain ATCC 49049 / DSM 4359 / NS-E) GN=prmA PE=3 SV=1
Length = 264
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 40 GYRIGQGLNEDPRFKV--LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G GL+ + V LKK +G +D+GC +GI+ I +A+K ++ +D+D
Sbjct: 105 GVAFGTGLHPTTQMSVFFLKKYLKKGDRVVDVGCGTGILAI-VAKKLGASYVMAVDVDEQ 163
Query: 98 RVADAYWHLRK 108
V A +++K
Sbjct: 164 AVEVAKENVQK 174
>sp|P45558|PRMA_CLOAB Ribosomal protein L11 methyltransferase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=prmA PE=2 SV=3
Length = 311
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 40 GYRIGQGLNEDPRF--KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSN 97
G G G +E R + L++ E + DIG SGI+ I A K N + +LG+D+DS
Sbjct: 152 GMAFGTGTHETTRMCIQALERYVNEDAEVFDIGTGSGILAIA-AAKLNAKKVLGVDLDSV 210
Query: 98 RVADA 102
V A
Sbjct: 211 AVKAA 215
>sp|P60094|PRMA_VIBVY Ribosomal protein L11 methyltransferase OS=Vibrio vulnificus
(strain YJ016) GN=prmA PE=3 SV=1
Length = 295
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 19/95 (20%)
Query: 55 VLKKEWFEGKD-----CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI 109
L EW EG D +D GC SGI+ I A K ++GIDID + +
Sbjct: 147 ALCLEWLEGLDLSGKTVIDFGCGSGILAIA-AIKLGAEKVIGIDIDP----------QAL 195
Query: 110 VRTEHNEKRRANASRVEVI---EKGDGLEKNVTAA 141
+ ++ N +R A +++V ++ +GL +V A
Sbjct: 196 LASKDNAQRNGVADQLDVYLPQDQPEGLLADVVVA 230
>sp|Q8XVP2|PRMA_RALSO Ribosomal protein L11 methyltransferase OS=Ralstonia solanacearum
(strain GMI1000) GN=prmA PE=3 SV=1
Length = 298
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K +G+DI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQHVQPGERTLDYGCGSGILAI-VAKKLGTGETVGVDI 196
Query: 95 DSNRV 99
D N V
Sbjct: 197 DPNAV 201
>sp|Q13U36|PRMA_BURXL Ribosomal protein L11 methyltransferase OS=Burkholderia xenovorans
(strain LB400) GN=prmA PE=3 SV=1
Length = 300
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 40 GYRIGQGLNEDPRFKVLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94
G G G + R L EW E G+ LD GC SGI+ I +A+K + GIDI
Sbjct: 141 GLAFGTGSHPTTR---LCMEWLEQSVQPGQSVLDYGCGSGILAI-LAKKCGADPVYGIDI 196
Query: 95 DSNRVADA 102
D V A
Sbjct: 197 DPQAVESA 204
>sp|Q8DD03|PRMA_VIBVU Ribosomal protein L11 methyltransferase OS=Vibrio vulnificus
(strain CMCP6) GN=prmA PE=3 SV=1
Length = 295
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 19/95 (20%)
Query: 55 VLKKEWFE-----GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKI 109
L EW E GK +D GC SGI+ I A K ++GIDID + +
Sbjct: 147 ALCLEWLESLDLSGKTVIDFGCGSGILAIA-AIKLGAEKVIGIDIDP----------QAL 195
Query: 110 VRTEHNEKRRANASRVEVI---EKGDGLEKNVTAA 141
+ ++ N +R A +++V ++ +GL +V A
Sbjct: 196 LASKDNAQRNGVADQLDVYLPQDQPEGLLADVVVA 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,584,049
Number of Sequences: 539616
Number of extensions: 4961187
Number of successful extensions: 14649
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 14538
Number of HSP's gapped (non-prelim): 290
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)