Query 047406
Match_columns 290
No_of_seqs 174 out of 2289
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2899 Predicted methyltransf 100.0 9.6E-35 2.1E-39 260.3 15.3 241 28-290 25-276 (288)
2 PF06859 Bin3: Bicoid-interact 99.8 3.9E-21 8.3E-26 154.2 3.2 109 180-290 1-110 (110)
3 PF12847 Methyltransf_18: Meth 99.7 2.7E-16 5.8E-21 124.5 12.6 109 62-223 1-111 (112)
4 PRK14966 unknown domain/N5-glu 99.7 3.6E-15 7.7E-20 145.1 20.1 192 13-286 195-415 (423)
5 COG2226 UbiE Methylase involve 99.7 8.5E-16 1.8E-20 139.7 14.6 104 62-221 51-154 (238)
6 PRK11036 putative S-adenosyl-L 99.7 1E-15 2.3E-20 139.6 14.9 154 61-271 43-208 (255)
7 PLN02233 ubiquinone biosynthes 99.7 1.4E-15 3.1E-20 139.8 15.9 111 60-223 71-182 (261)
8 PF01209 Ubie_methyltran: ubiE 99.7 3.4E-16 7.3E-21 142.0 11.1 106 60-221 45-151 (233)
9 PLN02244 tocopherol O-methyltr 99.7 2.2E-15 4.7E-20 143.5 16.7 153 61-270 117-278 (340)
10 TIGR00536 hemK_fam HemK family 99.7 6.8E-15 1.5E-19 136.7 19.4 194 14-289 56-282 (284)
11 PTZ00098 phosphoethanolamine N 99.7 3.6E-15 7.7E-20 137.3 16.4 152 60-271 50-203 (263)
12 PRK01544 bifunctional N5-gluta 99.7 5.7E-15 1.2E-19 147.7 18.6 182 14-271 57-294 (506)
13 PLN02336 phosphoethanolamine N 99.6 3.1E-15 6.7E-20 147.7 15.9 175 31-269 235-413 (475)
14 PF13489 Methyltransf_23: Meth 99.6 1.4E-15 3.1E-20 126.8 11.3 143 56-267 16-160 (161)
15 PLN02396 hexaprenyldihydroxybe 99.6 4.1E-15 9E-20 140.9 15.7 152 62-271 131-290 (322)
16 PF13847 Methyltransf_31: Meth 99.6 4.6E-15 1E-19 124.8 13.3 108 61-225 2-112 (152)
17 TIGR02752 MenG_heptapren 2-hep 99.6 9.5E-15 2.1E-19 130.5 15.8 108 61-224 44-152 (231)
18 PF08241 Methyltransf_11: Meth 99.6 2.7E-15 5.9E-20 114.0 10.1 95 67-221 1-95 (95)
19 PRK15451 tRNA cmo(5)U34 methyl 99.6 5.9E-15 1.3E-19 134.3 13.8 109 60-223 54-164 (247)
20 PRK14103 trans-aconitate 2-met 99.6 7.9E-15 1.7E-19 133.7 14.5 99 61-223 28-126 (255)
21 PRK15068 tRNA mo(5)U34 methylt 99.6 8.2E-15 1.8E-19 138.8 14.8 153 61-271 121-275 (322)
22 TIGR00740 methyltransferase, p 99.6 1E-14 2.3E-19 131.6 14.8 109 61-224 52-162 (239)
23 PF02353 CMAS: Mycolic acid cy 99.6 1.3E-14 2.8E-19 134.6 14.8 155 60-271 60-218 (273)
24 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.1E-15 8.8E-20 134.4 10.5 151 61-271 58-216 (243)
25 COG2230 Cfa Cyclopropane fatty 99.6 2.3E-14 4.9E-19 133.0 15.3 153 60-271 70-224 (283)
26 smart00828 PKS_MT Methyltransf 99.6 2.9E-14 6.2E-19 126.9 15.4 145 64-271 1-145 (224)
27 COG2890 HemK Methylase of poly 99.6 1.2E-13 2.7E-18 128.5 19.0 182 12-271 52-264 (280)
28 PRK00107 gidB 16S rRNA methylt 99.6 1.2E-13 2.6E-18 121.5 16.6 146 58-290 41-186 (187)
29 PRK11873 arsM arsenite S-adeno 99.6 8.4E-14 1.8E-18 127.9 15.8 154 60-271 75-231 (272)
30 TIGR00452 methyltransferase, p 99.6 6E-14 1.3E-18 132.5 14.8 154 61-271 120-274 (314)
31 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.4E-13 3.1E-18 131.2 17.4 146 61-271 112-257 (340)
32 smart00138 MeTrc Methyltransfe 99.6 7.5E-15 1.6E-19 135.4 8.1 136 62-224 99-243 (264)
33 TIGR03533 L3_gln_methyl protei 99.6 2.6E-13 5.6E-18 126.4 18.4 158 14-224 62-252 (284)
34 PRK10258 biotin biosynthesis p 99.5 9.7E-14 2.1E-18 125.9 14.6 100 62-224 42-141 (251)
35 PRK09328 N5-glutamine S-adenos 99.5 4.1E-13 8.9E-18 122.8 18.6 182 15-271 52-263 (275)
36 PRK08317 hypothetical protein; 99.5 9.3E-14 2E-18 122.8 13.7 149 61-268 18-174 (241)
37 TIGR00138 gidB 16S rRNA methyl 99.5 2.9E-13 6.4E-18 118.2 16.1 103 61-224 41-143 (181)
38 PRK11805 N5-glutamine S-adenos 99.5 3.4E-13 7.4E-18 127.0 17.6 159 14-224 74-264 (307)
39 KOG1270 Methyltransferases [Co 99.5 4.8E-14 1E-18 128.7 11.2 153 63-271 90-250 (282)
40 TIGR02072 BioC biotin biosynth 99.5 8.1E-14 1.8E-18 123.5 11.9 107 62-228 34-140 (240)
41 TIGR02716 C20_methyl_CrtF C-20 99.5 3.2E-13 6.9E-18 126.4 16.4 152 61-269 148-305 (306)
42 PRK11207 tellurite resistance 99.5 2.5E-13 5.4E-18 119.8 14.8 139 61-268 29-168 (197)
43 COG2264 PrmA Ribosomal protein 99.5 1.8E-13 3.9E-18 127.9 14.4 137 53-271 153-289 (300)
44 PRK01683 trans-aconitate 2-met 99.5 1.8E-13 3.9E-18 124.5 13.7 102 61-224 30-131 (258)
45 PRK00216 ubiE ubiquinone/menaq 99.5 4.8E-13 1E-17 118.8 15.9 107 61-222 50-157 (239)
46 COG1352 CheR Methylase of chem 99.5 4E-14 8.7E-19 130.9 8.5 135 63-223 97-241 (268)
47 TIGR03534 RF_mod_PrmC protein- 99.5 2E-12 4.4E-17 116.3 18.7 136 62-271 87-242 (251)
48 PF05175 MTS: Methyltransferas 99.5 2.9E-13 6.3E-18 116.6 12.0 110 62-223 31-140 (170)
49 PF06325 PrmA: Ribosomal prote 99.5 3.5E-13 7.7E-18 126.3 13.3 136 53-274 152-287 (295)
50 TIGR02021 BchM-ChlM magnesium 99.5 1.5E-12 3.2E-17 116.0 16.4 151 61-270 54-206 (219)
51 PF01739 CheR: CheR methyltran 99.5 1.3E-14 2.9E-19 128.5 2.8 137 62-224 31-176 (196)
52 PLN03075 nicotianamine synthas 99.5 8.5E-13 1.8E-17 123.5 14.4 109 62-223 123-233 (296)
53 PF08242 Methyltransf_12: Meth 99.5 1.6E-14 3.5E-19 112.6 2.4 99 67-219 1-99 (99)
54 PF06080 DUF938: Protein of un 99.5 2.1E-12 4.6E-17 114.7 15.8 182 49-290 11-204 (204)
55 PRK00517 prmA ribosomal protei 99.5 1.5E-12 3.2E-17 118.8 15.0 130 54-272 111-240 (250)
56 PRK08287 cobalt-precorrin-6Y C 99.5 1.9E-12 4.2E-17 112.6 14.6 125 61-268 30-154 (187)
57 TIGR00406 prmA ribosomal prote 99.5 2.4E-12 5.2E-17 120.0 16.0 108 55-223 152-259 (288)
58 TIGR02469 CbiT precorrin-6Y C5 99.5 1.7E-12 3.7E-17 103.8 13.0 105 61-223 18-122 (124)
59 PF13649 Methyltransf_25: Meth 99.5 2E-13 4.3E-18 107.2 7.4 97 66-217 1-101 (101)
60 PRK00121 trmB tRNA (guanine-N( 99.4 6.8E-13 1.5E-17 117.5 11.4 114 62-224 40-157 (202)
61 PF08003 Methyltransf_9: Prote 99.4 1.3E-12 2.9E-17 122.0 13.5 154 61-271 114-268 (315)
62 TIGR00477 tehB tellurite resis 99.4 1E-12 2.2E-17 115.7 12.1 140 62-270 30-169 (195)
63 PRK05134 bifunctional 3-demeth 99.4 7.2E-12 1.6E-16 112.2 16.8 151 61-270 47-205 (233)
64 TIGR03704 PrmC_rel_meth putati 99.4 8.5E-12 1.8E-16 114.3 17.3 152 19-224 33-217 (251)
65 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 4.3E-12 9.2E-17 111.6 14.8 104 62-223 39-143 (223)
66 TIGR00537 hemK_rel_arch HemK-r 99.4 5.5E-12 1.2E-16 109.0 15.0 134 61-271 18-166 (179)
67 PRK12335 tellurite resistance 99.4 3.8E-12 8.2E-17 118.4 13.1 138 62-269 120-258 (287)
68 PRK00377 cbiT cobalt-precorrin 99.4 7E-12 1.5E-16 110.4 14.0 107 60-223 38-145 (198)
69 PRK04266 fibrillarin; Provisio 99.4 1.5E-11 3.2E-16 111.3 16.4 139 61-271 71-211 (226)
70 TIGR02081 metW methionine bios 99.4 1.1E-11 2.4E-16 108.5 15.1 151 53-270 4-167 (194)
71 TIGR03587 Pse_Me-ase pseudamin 99.4 3.5E-12 7.7E-17 113.4 11.6 103 58-222 39-141 (204)
72 COG4106 Tam Trans-aconitate me 99.4 8.7E-13 1.9E-17 117.6 7.5 104 62-227 30-133 (257)
73 PF05401 NodS: Nodulation prot 99.4 1.7E-12 3.7E-17 114.6 9.1 102 64-223 45-146 (201)
74 KOG1540 Ubiquinone biosynthesi 99.4 8.4E-12 1.8E-16 113.7 13.8 152 61-267 99-278 (296)
75 TIGR01983 UbiG ubiquinone bios 99.4 2E-11 4.4E-16 108.3 16.1 152 62-271 45-204 (224)
76 PF07021 MetW: Methionine bios 99.4 1.3E-11 2.8E-16 108.6 14.4 152 53-271 4-168 (193)
77 PRK06922 hypothetical protein; 99.4 7.6E-12 1.7E-16 127.3 14.4 115 59-224 415-538 (677)
78 PRK15001 SAM-dependent 23S rib 99.4 7.1E-12 1.5E-16 121.2 13.4 112 63-223 229-340 (378)
79 PRK10611 chemotaxis methyltran 99.4 3.4E-12 7.3E-17 119.3 10.7 137 63-224 116-263 (287)
80 PRK07580 Mg-protoporphyrin IX 99.4 1.5E-11 3.3E-16 109.3 14.3 150 61-271 62-215 (230)
81 PLN02672 methionine S-methyltr 99.3 1.7E-11 3.6E-16 131.1 16.2 130 62-224 118-279 (1082)
82 PLN02336 phosphoethanolamine N 99.3 1.3E-11 2.9E-16 121.9 14.5 106 62-224 37-143 (475)
83 COG2242 CobL Precorrin-6B meth 99.3 3.1E-11 6.7E-16 105.7 15.0 147 60-288 32-182 (187)
84 PRK05785 hypothetical protein; 99.3 9.6E-12 2.1E-16 112.2 12.2 92 61-217 50-141 (226)
85 COG4123 Predicted O-methyltran 99.3 1.4E-11 3E-16 112.6 13.1 112 61-224 43-171 (248)
86 PRK11705 cyclopropane fatty ac 99.3 2E-11 4.4E-16 118.3 14.9 102 61-223 166-267 (383)
87 PF13659 Methyltransf_26: Meth 99.3 7.2E-12 1.6E-16 99.9 8.7 112 63-223 1-115 (117)
88 PLN02585 magnesium protoporphy 99.3 4E-11 8.7E-16 113.5 15.3 153 62-270 144-299 (315)
89 PRK13944 protein-L-isoaspartat 99.3 3E-11 6.5E-16 107.2 13.1 103 61-224 71-174 (205)
90 PRK14968 putative methyltransf 99.3 8.2E-11 1.8E-15 101.0 15.5 136 61-270 22-173 (188)
91 PRK07402 precorrin-6B methylas 99.3 4.5E-11 9.9E-16 104.8 14.1 105 61-224 39-143 (196)
92 PF03848 TehB: Tellurite resis 99.3 2.3E-11 5.1E-16 107.5 12.1 105 61-223 29-133 (192)
93 PRK09489 rsmC 16S ribosomal RN 99.3 2.8E-11 6E-16 115.7 13.4 111 63-227 197-307 (342)
94 TIGR00091 tRNA (guanine-N(7)-) 99.3 2.4E-11 5.1E-16 106.9 10.6 114 62-224 16-133 (194)
95 PRK06202 hypothetical protein; 99.3 4.5E-11 9.7E-16 107.4 12.5 103 61-222 59-165 (232)
96 KOG1271 Methyltransferases [Ge 99.2 5.6E-11 1.2E-15 103.7 10.7 136 64-271 69-206 (227)
97 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.8E-10 4E-15 103.2 13.6 119 61-222 33-151 (213)
98 TIGR01177 conserved hypothetic 99.2 1.3E-10 2.8E-15 110.2 13.3 135 59-271 179-316 (329)
99 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.2 1.3E-11 2.8E-16 113.5 6.1 178 61-269 55-238 (256)
100 TIGR00080 pimt protein-L-isoas 99.2 1.1E-10 2.3E-15 104.1 11.7 103 60-224 75-178 (215)
101 PRK11188 rrmJ 23S rRNA methylt 99.2 2.1E-10 4.5E-15 102.4 13.4 127 60-271 49-190 (209)
102 PRK13942 protein-L-isoaspartat 99.2 1.3E-10 2.8E-15 103.7 12.0 103 60-224 74-177 (212)
103 PRK14967 putative methyltransf 99.2 3.2E-10 7E-15 101.5 13.9 114 60-226 34-162 (223)
104 COG2813 RsmC 16S RNA G1207 met 99.2 1.1E-10 2.5E-15 108.9 11.2 109 63-224 159-267 (300)
105 PF05219 DREV: DREV methyltran 99.2 3.3E-10 7.2E-15 103.8 13.4 142 62-271 94-241 (265)
106 cd02440 AdoMet_MTases S-adenos 99.2 4E-10 8.6E-15 84.5 11.5 103 65-222 1-103 (107)
107 TIGR03438 probable methyltrans 99.2 2.9E-10 6.3E-15 106.7 12.6 112 59-222 60-176 (301)
108 PRK11088 rrmA 23S rRNA methylt 99.2 1.4E-10 3E-15 107.0 9.9 96 62-225 85-183 (272)
109 PTZ00146 fibrillarin; Provisio 99.2 9E-10 2E-14 103.0 15.2 136 60-271 130-272 (293)
110 KOG4300 Predicted methyltransf 99.1 2.8E-10 6E-15 101.2 10.4 150 64-271 78-233 (252)
111 COG4976 Predicted methyltransf 99.1 9.8E-11 2.1E-15 105.4 7.2 139 64-271 127-266 (287)
112 PRK13255 thiopurine S-methyltr 99.1 6.6E-10 1.4E-14 100.0 12.2 118 61-221 36-153 (218)
113 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.5E-09 3.3E-14 112.7 16.3 147 58-276 534-686 (702)
114 KOG1541 Predicted protein carb 99.1 4.7E-10 1E-14 100.5 10.5 105 63-223 51-160 (270)
115 PHA03411 putative methyltransf 99.1 2E-09 4.4E-14 99.9 15.0 135 61-267 63-211 (279)
116 KOG3010 Methyltransferase [Gen 99.1 2E-10 4.3E-15 104.0 7.9 100 64-221 35-135 (261)
117 PLN02781 Probable caffeoyl-CoA 99.1 7.9E-10 1.7E-14 100.4 11.4 110 61-227 67-182 (234)
118 PRK14121 tRNA (guanine-N(7)-)- 99.1 9.2E-10 2E-14 106.7 12.3 111 62-224 122-236 (390)
119 PRK00312 pcm protein-L-isoaspa 99.1 1.7E-09 3.6E-14 96.0 12.5 100 61-224 77-176 (212)
120 PRK04457 spermidine synthase; 99.1 4.4E-10 9.5E-15 103.7 8.8 112 61-222 65-176 (262)
121 KOG2361 Predicted methyltransf 99.0 9.7E-10 2.1E-14 99.6 9.8 153 65-271 74-238 (264)
122 PRK00811 spermidine synthase; 99.0 1.7E-09 3.7E-14 100.8 11.6 114 61-224 75-192 (283)
123 PF05891 Methyltransf_PK: AdoM 99.0 1.2E-09 2.5E-14 98.0 9.9 147 63-271 56-202 (218)
124 PF00891 Methyltransf_2: O-met 99.0 1.3E-09 2.8E-14 98.4 9.7 99 61-223 99-199 (241)
125 PF03291 Pox_MCEL: mRNA cappin 99.0 2.7E-09 5.8E-14 101.7 12.1 122 62-225 62-188 (331)
126 PF12147 Methyltransf_20: Puta 99.0 7.8E-09 1.7E-13 96.2 14.6 157 62-270 135-298 (311)
127 KOG2904 Predicted methyltransf 99.0 1.3E-08 2.8E-13 93.9 15.1 158 18-224 93-286 (328)
128 TIGR00563 rsmB ribosomal RNA s 99.0 6.4E-09 1.4E-13 102.0 13.6 118 61-226 237-371 (426)
129 PRK14902 16S rRNA methyltransf 99.0 9.4E-09 2E-13 101.3 14.8 115 61-224 249-380 (444)
130 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.1E-08 2.5E-13 94.2 14.3 115 61-225 70-201 (264)
131 PRK13168 rumA 23S rRNA m(5)U19 99.0 7.3E-09 1.6E-13 102.1 13.4 103 61-224 296-401 (443)
132 PLN02232 ubiquinone biosynthes 99.0 3.9E-09 8.5E-14 90.2 10.0 55 161-222 26-80 (160)
133 COG2518 Pcm Protein-L-isoaspar 99.0 6.3E-09 1.4E-13 92.9 11.3 101 60-224 70-170 (209)
134 PRK10901 16S rRNA methyltransf 99.0 1.3E-08 2.7E-13 100.0 14.6 111 61-224 243-373 (427)
135 PRK14903 16S rRNA methyltransf 98.9 1.1E-08 2.3E-13 100.8 13.5 119 60-227 235-370 (431)
136 PRK14904 16S rRNA methyltransf 98.9 1.6E-08 3.5E-13 99.7 14.8 111 61-225 249-379 (445)
137 TIGR00438 rrmJ cell division p 98.9 4.7E-09 1E-13 91.5 9.8 106 58-223 28-146 (188)
138 PRK13943 protein-L-isoaspartat 98.9 9.5E-09 2.1E-13 97.6 12.6 102 60-223 78-180 (322)
139 COG4122 Predicted O-methyltran 98.9 1.1E-08 2.4E-13 92.2 10.9 106 61-223 58-166 (219)
140 PRK14901 16S rRNA methyltransf 98.9 2E-08 4.3E-13 98.9 13.6 115 61-224 251-385 (434)
141 PLN02476 O-methyltransferase 98.9 1.3E-08 2.8E-13 94.8 11.6 110 61-227 117-232 (278)
142 PF01596 Methyltransf_3: O-met 98.9 1.2E-08 2.6E-13 91.1 10.8 109 61-226 44-158 (205)
143 PF01135 PCMT: Protein-L-isoas 98.9 6.2E-09 1.3E-13 93.2 8.8 103 60-224 70-173 (209)
144 PRK15128 23S rRNA m(5)C1962 me 98.9 5.3E-08 1.2E-12 95.0 15.5 115 59-222 217-338 (396)
145 PF10294 Methyltransf_16: Puta 98.9 1.1E-08 2.5E-13 88.6 9.5 113 58-223 41-156 (173)
146 COG2519 GCD14 tRNA(1-methylade 98.9 1.9E-08 4.2E-13 91.9 11.3 104 60-224 92-196 (256)
147 TIGR00417 speE spermidine synt 98.8 2.7E-08 5.9E-13 91.9 11.5 113 62-223 72-186 (270)
148 PRK10909 rsmD 16S rRNA m(2)G96 98.8 2.7E-08 5.8E-13 88.5 10.9 107 61-224 52-160 (199)
149 PF08704 GCD14: tRNA methyltra 98.8 4.2E-08 9E-13 90.0 12.4 107 59-224 37-147 (247)
150 PRK03522 rumB 23S rRNA methylu 98.8 2E-08 4.3E-13 94.8 10.2 104 62-225 173-276 (315)
151 PLN02366 spermidine synthase 98.8 3.5E-08 7.5E-13 93.3 11.5 118 61-228 90-212 (308)
152 smart00650 rADc Ribosomal RNA 98.8 3.6E-08 7.8E-13 84.6 9.7 102 61-223 12-113 (169)
153 PRK03612 spermidine synthase; 98.8 4E-08 8.8E-13 98.9 11.0 116 61-223 296-415 (521)
154 PF05724 TPMT: Thiopurine S-me 98.8 7E-08 1.5E-12 86.9 11.3 166 51-271 24-191 (218)
155 PHA03412 putative methyltransf 98.8 7.4E-08 1.6E-12 87.8 11.0 103 62-221 49-160 (241)
156 KOG1975 mRNA cap methyltransfe 98.7 3.8E-08 8.1E-13 92.7 8.8 124 56-225 111-239 (389)
157 PRK01581 speE spermidine synth 98.7 1.3E-07 2.7E-12 91.2 12.1 119 61-223 149-268 (374)
158 PRK11727 23S rRNA mA1618 methy 98.7 5.6E-08 1.2E-12 92.4 9.5 47 62-108 114-160 (321)
159 TIGR02085 meth_trns_rumB 23S r 98.7 2.3E-07 4.9E-12 89.8 13.7 103 61-224 232-335 (374)
160 COG1041 Predicted DNA modifica 98.7 2.4E-07 5.3E-12 88.3 13.2 157 48-290 180-346 (347)
161 TIGR00479 rumA 23S rRNA (uraci 98.7 1.6E-07 3.4E-12 92.2 12.3 103 61-224 291-397 (431)
162 PF02390 Methyltransf_4: Putat 98.7 1.1E-07 2.4E-12 84.2 9.9 112 64-224 19-134 (195)
163 PLN02589 caffeoyl-CoA O-methyl 98.7 1.4E-07 3E-12 86.6 10.7 110 61-227 78-194 (247)
164 TIGR00095 RNA methyltransferas 98.7 1.7E-07 3.6E-12 82.6 10.6 108 61-224 48-160 (189)
165 PRK13256 thiopurine S-methyltr 98.7 2.9E-07 6.2E-12 83.5 12.0 119 62-223 43-163 (226)
166 COG1092 Predicted SAM-dependen 98.6 3.9E-07 8.6E-12 88.6 12.9 112 61-223 216-336 (393)
167 PF01170 UPF0020: Putative RNA 98.6 9.8E-07 2.1E-11 77.0 13.4 116 57-221 23-149 (179)
168 KOG3191 Predicted N6-DNA-methy 98.6 9.6E-07 2.1E-11 77.3 13.0 134 63-270 44-193 (209)
169 KOG1499 Protein arginine N-met 98.6 2.6E-07 5.6E-12 87.8 10.1 110 58-221 56-165 (346)
170 COG2263 Predicted RNA methylas 98.6 2.1E-07 4.5E-12 81.9 8.7 74 60-188 43-116 (198)
171 PF02475 Met_10: Met-10+ like- 98.5 4.6E-07 9.9E-12 80.7 9.3 103 58-220 97-199 (200)
172 COG0220 Predicted S-adenosylme 98.5 7.6E-07 1.6E-11 80.8 10.7 112 64-224 50-165 (227)
173 PF03602 Cons_hypoth95: Conser 98.5 2.6E-07 5.6E-12 81.1 7.2 108 61-224 41-154 (183)
174 KOG3178 Hydroxyindole-O-methyl 98.5 6.8E-07 1.5E-11 85.0 10.2 144 64-271 179-331 (342)
175 PLN02823 spermine synthase 98.5 7.5E-07 1.6E-11 85.2 10.5 115 61-224 102-221 (336)
176 PF05185 PRMT5: PRMT5 arginine 98.5 6.3E-07 1.4E-11 88.8 9.8 105 63-221 187-295 (448)
177 TIGR00478 tly hemolysin TlyA f 98.4 2.3E-06 5.1E-11 77.7 11.3 40 61-101 74-113 (228)
178 PF03141 Methyltransf_29: Puta 98.4 8.1E-08 1.8E-12 95.0 1.3 51 172-227 173-223 (506)
179 KOG1661 Protein-L-isoaspartate 98.4 1.8E-06 3.8E-11 77.2 9.2 121 52-224 72-194 (237)
180 PF10672 Methyltrans_SAM: S-ad 98.4 1.4E-06 3.1E-11 81.5 8.6 111 60-222 121-237 (286)
181 PTZ00338 dimethyladenosine tra 98.4 3.4E-06 7.5E-11 79.3 11.2 65 42-108 13-80 (294)
182 PF02527 GidB: rRNA small subu 98.3 6.9E-06 1.5E-10 72.3 11.1 100 65-225 51-150 (184)
183 PRK05031 tRNA (uracil-5-)-meth 98.3 5.9E-06 1.3E-10 79.7 11.5 44 63-108 207-250 (362)
184 PRK11933 yebU rRNA (cytosine-C 98.3 1.2E-05 2.5E-10 80.3 13.9 118 60-226 111-245 (470)
185 PF11968 DUF3321: Putative met 98.3 4.8E-06 1E-10 74.8 10.0 89 164-271 86-182 (219)
186 PRK04338 N(2),N(2)-dimethylgua 98.3 4E-06 8.6E-11 81.6 10.0 102 63-224 58-159 (382)
187 KOG1500 Protein arginine N-met 98.3 2.7E-06 5.8E-11 80.8 8.0 133 35-223 142-282 (517)
188 KOG2940 Predicted methyltransf 98.3 2.6E-06 5.6E-11 77.3 7.4 151 62-271 72-228 (325)
189 PRK14896 ksgA 16S ribosomal RN 98.3 6E-06 1.3E-10 75.9 9.9 61 44-106 8-71 (258)
190 KOG1663 O-methyltransferase [S 98.2 1.1E-05 2.4E-10 73.0 11.1 116 53-226 65-186 (237)
191 COG2265 TrmA SAM-dependent met 98.2 9.6E-06 2.1E-10 80.1 11.7 103 62-224 293-397 (432)
192 PF05148 Methyltransf_8: Hypot 98.2 9.2E-06 2E-10 72.7 10.5 114 61-269 71-184 (219)
193 PRK00274 ksgA 16S ribosomal RN 98.2 4.5E-06 9.7E-11 77.3 8.8 43 61-105 41-83 (272)
194 PF04816 DUF633: Family of unk 98.2 1.8E-05 3.9E-10 70.8 12.3 122 66-268 1-122 (205)
195 COG2521 Predicted archaeal met 98.2 2.8E-06 6.2E-11 77.1 7.0 144 61-271 133-278 (287)
196 COG0421 SpeE Spermidine syntha 98.2 9.9E-06 2.2E-10 75.8 10.2 112 64-224 78-191 (282)
197 KOG3987 Uncharacterized conser 98.2 5E-07 1.1E-11 80.7 1.3 93 62-221 112-205 (288)
198 PF07942 N2227: N2227-like pro 98.2 3.9E-05 8.4E-10 71.3 13.5 180 63-270 57-242 (270)
199 TIGR02143 trmA_only tRNA (urac 98.2 9.9E-06 2.2E-10 77.9 9.8 44 63-108 198-241 (353)
200 PRK04148 hypothetical protein; 98.1 2.3E-05 4.9E-10 65.7 10.1 93 62-223 16-109 (134)
201 PF01564 Spermine_synth: Sperm 98.1 9.4E-06 2E-10 74.4 8.6 114 61-223 75-191 (246)
202 PF09445 Methyltransf_15: RNA 98.1 5E-06 1.1E-10 71.8 6.2 74 64-187 1-76 (163)
203 TIGR00755 ksgA dimethyladenosi 98.1 3.5E-05 7.6E-10 70.4 12.0 44 61-106 28-71 (253)
204 COG0742 N6-adenine-specific me 98.1 2.6E-05 5.7E-10 68.7 10.6 115 54-224 35-155 (187)
205 PRK01544 bifunctional N5-gluta 98.1 1.9E-05 4.1E-10 79.5 10.6 114 62-224 347-463 (506)
206 KOG1269 SAM-dependent methyltr 98.1 9.1E-06 2E-10 78.5 7.3 109 58-222 106-214 (364)
207 PRK00536 speE spermidine synth 98.0 3.3E-05 7.1E-10 71.6 10.3 102 61-224 71-172 (262)
208 PF02384 N6_Mtase: N-6 DNA Met 98.0 3.3E-05 7.1E-10 72.3 10.3 117 61-224 45-184 (311)
209 KOG3420 Predicted RNA methylas 98.0 7.9E-06 1.7E-10 69.4 5.2 47 61-108 47-93 (185)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.0 6.3E-05 1.4E-09 78.5 12.8 116 59-224 186-348 (702)
211 TIGR02987 met_A_Alw26 type II 98.0 0.00014 3E-09 73.3 14.4 47 62-108 31-85 (524)
212 KOG3045 Predicted RNA methylas 98.0 6.8E-05 1.5E-09 69.2 10.7 80 164-271 213-292 (325)
213 COG0357 GidB Predicted S-adeno 98.0 0.00012 2.6E-09 66.0 12.0 99 63-221 68-166 (215)
214 PF08123 DOT1: Histone methyla 97.9 7.1E-05 1.5E-09 66.9 10.2 115 60-221 40-156 (205)
215 TIGR03439 methyl_EasF probable 97.9 0.00016 3.5E-09 68.8 13.0 117 56-223 70-197 (319)
216 COG2520 Predicted methyltransf 97.9 5.4E-05 1.2E-09 72.5 9.8 105 58-222 184-288 (341)
217 COG1189 Predicted rRNA methyla 97.9 8E-05 1.7E-09 67.8 10.3 160 61-289 78-241 (245)
218 COG3897 Predicted methyltransf 97.9 3.1E-05 6.8E-10 68.6 7.4 117 58-236 75-191 (218)
219 COG0116 Predicted N6-adenine-s 97.9 0.00012 2.7E-09 70.8 12.0 117 56-224 185-345 (381)
220 PF01728 FtsJ: FtsJ-like methy 97.9 4.7E-05 1E-09 65.7 8.3 36 62-97 23-59 (181)
221 TIGR00308 TRM1 tRNA(guanine-26 97.9 9.2E-05 2E-09 71.9 11.0 101 64-223 46-147 (374)
222 COG2384 Predicted SAM-dependen 97.9 0.00035 7.6E-09 63.0 13.4 117 51-224 5-121 (226)
223 PF05971 Methyltransf_10: Prot 97.9 7.6E-05 1.6E-09 70.3 9.2 45 63-108 103-148 (299)
224 PF09243 Rsm22: Mitochondrial 97.8 0.00015 3.3E-09 67.4 11.1 113 62-229 33-146 (274)
225 COG0144 Sun tRNA and rRNA cyto 97.8 0.0004 8.7E-09 66.9 14.2 116 61-225 155-290 (355)
226 COG0293 FtsJ 23S rRNA methylas 97.8 0.00049 1.1E-08 61.5 12.6 100 60-222 43-158 (205)
227 PRK00050 16S rRNA m(4)C1402 me 97.8 3.5E-05 7.6E-10 72.6 5.6 46 61-106 18-64 (296)
228 COG0500 SmtA SAM-dependent met 97.8 0.00066 1.4E-08 51.9 11.7 103 66-225 52-157 (257)
229 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00022 4.7E-09 68.7 10.2 43 64-108 198-240 (352)
230 KOG1331 Predicted methyltransf 97.7 6.9E-05 1.5E-09 69.8 5.5 109 49-221 32-141 (293)
231 PF03059 NAS: Nicotianamine sy 97.6 0.00062 1.4E-08 63.6 11.3 106 64-222 122-229 (276)
232 COG0030 KsgA Dimethyladenosine 97.6 0.00051 1.1E-08 63.6 9.8 63 42-106 7-72 (259)
233 KOG0820 Ribosomal RNA adenine 97.5 0.00034 7.5E-09 65.0 8.2 68 39-108 32-102 (315)
234 KOG3201 Uncharacterized conser 97.5 0.00011 2.5E-09 63.5 4.7 110 61-222 28-139 (201)
235 COG3963 Phospholipid N-methylt 97.5 0.00051 1.1E-08 59.7 8.5 103 61-221 47-154 (194)
236 PF01269 Fibrillarin: Fibrilla 97.5 0.0027 5.9E-08 57.5 13.1 137 60-271 71-213 (229)
237 KOG2915 tRNA(1-methyladenosine 97.5 0.0022 4.8E-08 59.7 12.6 103 60-221 103-207 (314)
238 PF04672 Methyltransf_19: S-ad 97.4 0.00073 1.6E-08 62.7 9.0 150 64-267 70-233 (267)
239 PF13578 Methyltransf_24: Meth 97.4 4.3E-05 9.3E-10 60.1 0.7 100 67-222 1-104 (106)
240 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.00049 1.1E-08 64.3 7.9 115 61-224 84-220 (283)
241 TIGR01444 fkbM_fam methyltrans 97.4 0.00064 1.4E-08 55.9 7.6 44 65-108 1-44 (143)
242 KOG2730 Methylase [General fun 97.3 0.00017 3.6E-09 65.2 2.9 75 62-186 94-171 (263)
243 PRK11760 putative 23S rRNA C24 97.2 0.0023 4.9E-08 61.5 10.1 35 60-96 209-243 (357)
244 COG4076 Predicted RNA methylas 97.1 0.001 2.2E-08 59.0 6.3 113 51-221 19-133 (252)
245 KOG2187 tRNA uracil-5-methyltr 97.0 0.0019 4.1E-08 64.6 7.4 46 61-108 382-427 (534)
246 PF13679 Methyltransf_32: Meth 97.0 0.0066 1.4E-07 50.6 9.6 48 61-108 24-75 (141)
247 COG1889 NOP1 Fibrillarin-like 97.0 0.02 4.4E-07 51.3 12.7 136 61-271 75-215 (231)
248 KOG1709 Guanidinoacetate methy 96.9 0.006 1.3E-07 55.2 9.2 105 61-222 100-205 (271)
249 COG4262 Predicted spermidine s 96.9 0.0056 1.2E-07 59.3 9.5 114 61-224 288-408 (508)
250 PF01861 DUF43: Protein of unk 96.9 0.027 5.9E-07 51.6 13.3 134 59-271 41-179 (243)
251 COG4798 Predicted methyltransf 96.8 0.011 2.4E-07 52.8 9.6 156 59-267 45-202 (238)
252 KOG2798 Putative trehalase [Ca 96.8 0.012 2.7E-07 55.8 10.3 180 63-269 151-336 (369)
253 KOG1122 tRNA and rRNA cytosine 96.8 0.018 3.8E-07 56.6 11.7 50 61-110 240-290 (460)
254 KOG3115 Methyltransferase-like 96.7 0.014 2.9E-07 52.5 9.4 47 62-108 60-106 (249)
255 PF11599 AviRa: RRNA methyltra 96.6 0.0086 1.9E-07 54.1 8.0 152 62-222 51-213 (246)
256 COG0286 HsdM Type I restrictio 96.6 0.091 2E-06 52.9 15.7 49 62-110 186-238 (489)
257 PF00398 RrnaAD: Ribosomal RNA 96.4 0.0099 2.1E-07 54.7 7.4 43 61-105 29-71 (262)
258 TIGR00006 S-adenosyl-methyltra 96.4 0.011 2.5E-07 55.9 7.9 48 61-108 19-66 (305)
259 PF06962 rRNA_methylase: Putat 96.2 0.021 4.6E-07 48.2 7.4 85 88-224 1-93 (140)
260 KOG2352 Predicted spermine/spe 96.1 0.028 6.1E-07 56.1 8.8 115 56-222 41-160 (482)
261 PF02005 TRM: N2,N2-dimethylgu 96.0 0.032 6.9E-07 54.4 8.5 105 61-223 48-154 (377)
262 KOG4589 Cell division protein 95.9 0.058 1.3E-06 48.0 8.9 35 60-94 67-102 (232)
263 PF04989 CmcI: Cephalosporin h 95.8 0.014 3.1E-07 52.3 5.0 116 53-224 24-148 (206)
264 COG1064 AdhP Zn-dependent alco 95.8 0.049 1.1E-06 52.3 8.7 46 59-105 163-209 (339)
265 PF07091 FmrO: Ribosomal RNA m 95.7 0.042 9.1E-07 50.6 7.8 48 61-108 104-151 (251)
266 COG5459 Predicted rRNA methyla 95.6 0.044 9.5E-07 53.0 7.7 112 61-224 112-226 (484)
267 PRK10742 putative methyltransf 95.5 0.047 1E-06 50.4 7.3 46 61-108 85-132 (250)
268 KOG2793 Putative N2,N2-dimethy 95.4 0.092 2E-06 48.4 8.9 110 63-223 87-199 (248)
269 PRK09880 L-idonate 5-dehydroge 95.3 0.093 2E-06 49.4 8.9 44 61-104 168-212 (343)
270 KOG2198 tRNA cytosine-5-methyl 95.3 0.21 4.5E-06 48.5 11.1 48 59-106 152-203 (375)
271 COG3129 Predicted SAM-dependen 95.1 0.033 7.3E-07 51.0 4.9 47 62-108 78-124 (292)
272 PRK01747 mnmC bifunctional tRN 95.0 0.24 5.2E-06 51.4 11.4 78 162-270 148-227 (662)
273 COG1063 Tdh Threonine dehydrog 94.7 0.092 2E-06 50.3 7.1 45 61-105 167-212 (350)
274 PRK09424 pntA NAD(P) transhydr 94.4 0.26 5.7E-06 49.9 9.8 43 61-104 163-206 (509)
275 cd00315 Cyt_C5_DNA_methylase C 93.9 0.9 2E-05 42.1 11.6 42 64-106 1-42 (275)
276 PLN02668 indole-3-acetate carb 93.9 0.26 5.7E-06 48.2 8.2 57 166-223 149-237 (386)
277 PF01555 N6_N4_Mtase: DNA meth 93.8 0.16 3.4E-06 44.2 6.1 42 61-104 190-231 (231)
278 PF04445 SAM_MT: Putative SAM- 93.4 0.19 4.2E-06 45.9 6.1 85 64-190 77-161 (234)
279 KOG1562 Spermidine synthase [A 93.4 0.25 5.5E-06 46.7 6.9 117 61-224 120-237 (337)
280 PF03269 DUF268: Caenorhabditi 93.2 0.059 1.3E-06 46.8 2.3 61 164-224 47-112 (177)
281 PF03492 Methyltransf_7: SAM d 93.2 0.48 1E-05 45.4 8.8 30 164-194 92-121 (334)
282 TIGR01202 bchC 2-desacetyl-2-h 92.7 0.62 1.3E-05 43.3 8.6 43 61-103 143-186 (308)
283 KOG1253 tRNA methyltransferase 92.7 0.2 4.3E-06 50.3 5.4 106 61-224 108-217 (525)
284 PRK11524 putative methyltransf 92.7 0.32 7E-06 45.2 6.6 46 61-108 207-252 (284)
285 COG4627 Uncharacterized protei 92.6 0.072 1.6E-06 46.0 2.0 49 173-225 40-88 (185)
286 KOG1501 Arginine N-methyltrans 92.4 0.32 6.8E-06 48.5 6.3 43 65-108 69-111 (636)
287 COG1867 TRM1 N2,N2-dimethylgua 92.3 0.73 1.6E-05 44.8 8.5 46 63-108 53-98 (380)
288 PRK13699 putative methylase; P 92.1 0.47 1E-05 42.9 6.8 47 60-108 161-207 (227)
289 PF01795 Methyltransf_5: MraW 92.1 0.2 4.4E-06 47.6 4.6 55 51-107 11-65 (310)
290 cd08281 liver_ADH_like1 Zinc-d 91.8 0.58 1.3E-05 44.6 7.4 45 60-104 189-234 (371)
291 TIGR03451 mycoS_dep_FDH mycoth 91.6 0.79 1.7E-05 43.4 8.1 45 60-104 174-219 (358)
292 cd08237 ribitol-5-phosphate_DH 91.6 0.8 1.7E-05 43.2 8.1 44 61-104 162-207 (341)
293 cd08283 FDH_like_1 Glutathione 91.5 0.43 9.4E-06 45.8 6.2 45 60-104 182-227 (386)
294 cd00401 AdoHcyase S-adenosyl-L 91.4 0.86 1.9E-05 45.1 8.2 43 61-104 200-243 (413)
295 KOG0024 Sorbitol dehydrogenase 91.3 0.34 7.4E-06 46.4 5.1 47 58-104 165-212 (354)
296 PF03141 Methyltransf_29: Puta 91.3 0.21 4.5E-06 50.3 3.8 53 168-223 415-467 (506)
297 TIGR03366 HpnZ_proposed putati 91.1 0.85 1.8E-05 41.7 7.5 44 61-104 119-163 (280)
298 PF00107 ADH_zinc_N: Zinc-bind 91.0 0.17 3.6E-06 40.5 2.4 31 73-104 2-32 (130)
299 cd08230 glucose_DH Glucose deh 91.0 1.4 3E-05 41.6 9.0 43 61-104 171-217 (355)
300 PHA01634 hypothetical protein 90.6 0.63 1.4E-05 39.1 5.4 47 61-108 27-73 (156)
301 TIGR00027 mthyl_TIGR00027 meth 90.0 5.6 0.00012 36.7 11.9 152 64-268 83-248 (260)
302 KOG2671 Putative RNA methylase 89.9 0.72 1.6E-05 44.7 5.9 41 59-101 205-245 (421)
303 PF07757 AdoMet_MTase: Predict 89.8 0.25 5.4E-06 40.0 2.4 30 63-94 59-88 (112)
304 TIGR02822 adh_fam_2 zinc-bindi 89.7 2.6 5.6E-05 39.6 9.6 44 60-104 163-207 (329)
305 cd08254 hydroxyacyl_CoA_DH 6-h 89.6 1.5 3.2E-05 40.4 7.8 44 60-104 163-207 (338)
306 cd08239 THR_DH_like L-threonin 89.4 1.2 2.6E-05 41.5 7.1 44 61-104 162-206 (339)
307 PF05430 Methyltransf_30: S-ad 89.3 0.52 1.1E-05 38.9 4.0 79 162-271 32-112 (124)
308 COG4301 Uncharacterized conser 89.0 9.2 0.0002 35.8 12.1 111 61-223 77-193 (321)
309 PLN02740 Alcohol dehydrogenase 88.6 1.3 2.9E-05 42.4 6.9 46 59-104 195-241 (381)
310 cd08232 idonate-5-DH L-idonate 88.6 2.6 5.5E-05 39.1 8.7 43 62-104 165-208 (339)
311 cd08285 NADP_ADH NADP(H)-depen 88.5 2.2 4.7E-05 40.0 8.2 45 60-104 164-209 (351)
312 KOG4058 Uncharacterized conser 87.9 4.1 9E-05 35.2 8.6 45 63-108 73-117 (199)
313 COG0275 Predicted S-adenosylme 87.8 1.9 4.1E-05 41.0 7.1 48 61-108 22-70 (314)
314 cd05188 MDR Medium chain reduc 87.2 2.9 6.4E-05 36.6 7.8 42 61-103 133-175 (271)
315 PRK10309 galactitol-1-phosphat 86.4 3.3 7.1E-05 38.8 8.1 44 61-104 159-203 (347)
316 PLN02827 Alcohol dehydrogenase 86.3 2 4.4E-05 41.2 6.7 45 60-104 191-236 (378)
317 KOG2920 Predicted methyltransf 86.1 0.61 1.3E-05 43.8 2.8 40 60-100 114-153 (282)
318 KOG0822 Protein kinase inhibit 85.6 1.6 3.5E-05 44.4 5.7 104 64-221 369-476 (649)
319 KOG2352 Predicted spermine/spe 85.4 2.6 5.6E-05 42.4 7.0 48 61-108 294-341 (482)
320 COG0604 Qor NADPH:quinone redu 84.8 3.8 8.3E-05 39.0 7.7 44 60-104 140-185 (326)
321 PRK10083 putative oxidoreducta 84.7 4.7 0.0001 37.3 8.2 45 60-104 158-204 (339)
322 PF11899 DUF3419: Protein of u 83.9 2.4 5.1E-05 41.5 5.9 57 47-105 20-76 (380)
323 cd08255 2-desacetyl-2-hydroxye 83.7 8.8 0.00019 34.3 9.3 45 60-104 95-140 (277)
324 KOG1099 SAM-dependent methyltr 83.5 2 4.4E-05 39.5 4.9 33 64-96 43-84 (294)
325 cd08234 threonine_DH_like L-th 82.9 4.7 0.0001 37.1 7.3 44 60-103 157-201 (334)
326 PF02254 TrkA_N: TrkA-N domain 82.8 19 0.00041 27.9 9.9 34 71-104 4-39 (116)
327 KOG1596 Fibrillarin and relate 82.8 5.7 0.00012 37.0 7.5 105 60-223 154-261 (317)
328 cd08300 alcohol_DH_class_III c 82.7 5.4 0.00012 37.9 7.8 45 60-104 184-229 (368)
329 PF05711 TylF: Macrocin-O-meth 82.6 6.1 0.00013 36.5 7.8 57 160-224 156-213 (248)
330 cd05278 FDH_like Formaldehyde 82.2 6.5 0.00014 36.4 8.0 44 60-103 165-209 (347)
331 PTZ00357 methyltransferase; Pr 81.4 6.4 0.00014 41.7 8.1 109 65-218 703-830 (1072)
332 KOG2078 tRNA modification enzy 81.4 1 2.2E-05 44.7 2.3 48 59-108 246-293 (495)
333 TIGR03201 dearomat_had 6-hydro 81.3 5.7 0.00012 37.4 7.4 44 60-104 164-208 (349)
334 COG1568 Predicted methyltransf 80.9 15 0.00033 34.8 9.7 105 61-222 151-259 (354)
335 cd08277 liver_alcohol_DH_like 80.8 6.7 0.00015 37.2 7.7 45 60-104 182-227 (365)
336 cd08293 PTGR2 Prostaglandin re 80.7 7 0.00015 36.3 7.7 41 64-104 156-198 (345)
337 PLN03154 putative allyl alcoho 80.3 7.9 0.00017 36.6 8.0 43 60-103 156-200 (348)
338 TIGR00561 pntA NAD(P) transhyd 80.1 3.9 8.4E-05 41.6 6.0 42 62-104 163-205 (511)
339 COG0270 Dcm Site-specific DNA 79.5 15 0.00033 34.9 9.6 43 63-106 3-45 (328)
340 cd08233 butanediol_DH_like (2R 79.5 9 0.00019 35.8 8.0 45 60-104 170-215 (351)
341 PF10354 DUF2431: Domain of un 79.3 37 0.00079 29.2 11.1 45 177-223 72-125 (166)
342 KOG0022 Alcohol dehydrogenase, 79.3 3.7 8E-05 39.5 5.2 47 58-104 188-235 (375)
343 TIGR02825 B4_12hDH leukotriene 79.1 13 0.00028 34.4 8.8 44 60-104 136-181 (325)
344 cd08294 leukotriene_B4_DH_like 79.1 8.8 0.00019 35.2 7.7 44 60-104 141-186 (329)
345 TIGR00675 dcm DNA-methyltransf 78.8 21 0.00046 33.7 10.3 40 66-106 1-40 (315)
346 KOG3924 Putative protein methy 78.8 2.8 6.2E-05 41.2 4.4 115 60-221 190-306 (419)
347 TIGR00936 ahcY adenosylhomocys 78.8 8 0.00017 38.2 7.6 42 60-102 192-234 (406)
348 COG2933 Predicted SAM-dependen 78.3 13 0.00027 35.2 8.3 35 60-96 209-243 (358)
349 KOG1227 Putative methyltransfe 77.3 1.7 3.7E-05 41.4 2.4 48 61-108 193-240 (351)
350 PRK11524 putative methyltransf 77.2 8.5 0.00018 35.7 7.0 61 163-223 9-80 (284)
351 cd08286 FDH_like_ADH2 formalde 77.1 13 0.00028 34.6 8.3 44 60-103 164-208 (345)
352 PF07279 DUF1442: Protein of u 77.0 26 0.00057 31.8 9.7 45 64-108 43-91 (218)
353 PF11899 DUF3419: Protein of u 76.8 3.7 8E-05 40.2 4.6 58 161-222 275-333 (380)
354 KOG2539 Mitochondrial/chloropl 76.6 9.1 0.0002 38.5 7.2 46 63-108 201-248 (491)
355 cd05281 TDH Threonine dehydrog 75.7 16 0.00035 33.9 8.6 44 61-104 162-206 (341)
356 cd08245 CAD Cinnamyl alcohol d 75.4 21 0.00046 32.7 9.2 43 60-103 160-203 (330)
357 PF02636 Methyltransf_28: Puta 75.0 2.8 6.1E-05 38.1 3.1 45 64-108 20-72 (252)
358 cd08296 CAD_like Cinnamyl alco 74.9 14 0.0003 34.4 7.8 44 60-104 161-205 (333)
359 cd08261 Zn_ADH7 Alcohol dehydr 74.4 14 0.0003 34.3 7.7 43 60-103 157-200 (337)
360 KOG2651 rRNA adenine N-6-methy 74.2 5.1 0.00011 39.4 4.7 42 62-104 153-194 (476)
361 cd08231 MDR_TM0436_like Hypoth 73.9 20 0.00044 33.5 8.8 42 62-103 177-219 (361)
362 cd08278 benzyl_alcohol_DH Benz 73.5 13 0.00029 35.1 7.5 44 61-104 185-229 (365)
363 PRK05396 tdh L-threonine 3-deh 73.4 16 0.00036 33.8 8.0 44 61-104 162-206 (341)
364 PF05050 Methyltransf_21: Meth 73.2 6.9 0.00015 32.0 4.8 38 68-105 1-42 (167)
365 cd05285 sorbitol_DH Sorbitol d 73.1 20 0.00044 33.3 8.5 45 60-104 160-205 (343)
366 cd05279 Zn_ADH1 Liver alcohol 72.8 16 0.00034 34.7 7.8 45 60-104 181-226 (365)
367 PLN02586 probable cinnamyl alc 72.7 12 0.00026 35.6 6.9 38 61-99 182-220 (360)
368 COG1062 AdhC Zn-dependent alco 72.7 7.6 0.00016 37.7 5.5 46 60-105 183-229 (366)
369 PF11312 DUF3115: Protein of u 72.6 16 0.00034 35.0 7.5 63 162-225 176-244 (315)
370 cd08265 Zn_ADH3 Alcohol dehydr 72.2 17 0.00036 34.8 7.9 46 59-104 200-246 (384)
371 KOG2912 Predicted DNA methylas 71.9 4.9 0.00011 38.7 4.0 43 66-108 106-148 (419)
372 PRK05476 S-adenosyl-L-homocyst 71.9 13 0.00027 37.1 7.0 41 61-102 210-251 (425)
373 TIGR00692 tdh L-threonine 3-de 70.7 21 0.00046 33.1 8.1 44 61-104 160-204 (340)
374 PF04072 LCM: Leucine carboxyl 70.3 36 0.00078 29.3 8.9 46 62-108 77-123 (183)
375 PF06557 DUF1122: Protein of u 69.5 14 0.0003 32.2 5.8 64 198-271 61-124 (170)
376 COG3315 O-Methyltransferase in 69.3 48 0.001 31.3 10.1 112 60-223 89-209 (297)
377 PLN02702 L-idonate 5-dehydroge 69.1 22 0.00047 33.5 7.8 45 60-104 179-224 (364)
378 PF02086 MethyltransfD12: D12 69.0 9.4 0.0002 34.2 5.1 54 53-108 9-64 (260)
379 PLN02494 adenosylhomocysteinas 68.3 13 0.00027 37.7 6.2 41 61-102 252-293 (477)
380 cd08240 6_hydroxyhexanoate_dh_ 68.1 17 0.00036 33.9 6.7 42 62-103 175-217 (350)
381 cd08236 sugar_DH NAD(P)-depend 67.9 19 0.00042 33.2 7.1 43 60-102 157-200 (343)
382 PF02153 PDH: Prephenate dehyd 67.0 26 0.00056 32.0 7.6 28 77-104 2-29 (258)
383 PF14740 DUF4471: Domain of un 66.7 11 0.00024 35.6 5.2 84 162-268 201-287 (289)
384 cd08242 MDR_like Medium chain 66.5 46 0.001 30.4 9.3 43 61-104 154-197 (319)
385 PRK09422 ethanol-active dehydr 65.8 25 0.00054 32.4 7.4 45 60-104 160-205 (338)
386 PRK13699 putative methylase; P 64.4 19 0.00042 32.5 6.1 21 202-222 51-71 (227)
387 PLN02178 cinnamyl-alcohol dehy 64.1 28 0.0006 33.5 7.6 37 61-98 177-214 (375)
388 PF00145 DNA_methylase: C-5 cy 64.0 14 0.0003 33.8 5.3 42 65-107 2-43 (335)
389 TIGR02818 adh_III_F_hyde S-(hy 63.2 14 0.00031 35.1 5.4 45 60-104 183-228 (368)
390 cd08279 Zn_ADH_class_III Class 63.2 23 0.0005 33.4 6.7 43 61-103 181-224 (363)
391 cd08295 double_bond_reductase_ 62.7 38 0.00083 31.4 8.1 44 60-104 149-194 (338)
392 cd08263 Zn_ADH10 Alcohol dehyd 62.6 35 0.00076 32.1 7.9 43 61-103 186-229 (367)
393 cd08287 FDH_like_ADH3 formalde 62.6 41 0.0009 31.1 8.3 44 60-103 166-210 (345)
394 KOG1098 Putative SAM-dependent 61.6 7.8 0.00017 40.4 3.3 38 59-96 41-79 (780)
395 PF01555 N6_N4_Mtase: DNA meth 61.4 12 0.00027 32.1 4.2 24 201-224 34-57 (231)
396 cd08298 CAD2 Cinnamyl alcohol 61.3 66 0.0014 29.4 9.3 42 60-102 165-207 (329)
397 PF02737 3HCDH_N: 3-hydroxyacy 60.8 1.1E+02 0.0024 26.3 10.6 112 66-224 2-115 (180)
398 COG1255 Uncharacterized protei 60.6 52 0.0011 27.2 7.3 37 58-97 10-47 (129)
399 COG1565 Uncharacterized conser 60.5 23 0.0005 34.6 6.1 47 62-108 77-131 (370)
400 cd05284 arabinose_DH_like D-ar 59.8 44 0.00096 30.7 7.9 43 60-102 165-208 (340)
401 PLN02514 cinnamyl-alcohol dehy 58.4 43 0.00092 31.7 7.7 41 61-102 179-220 (357)
402 cd08291 ETR_like_1 2-enoyl thi 58.3 46 0.001 30.6 7.7 42 62-104 142-186 (324)
403 PRK08293 3-hydroxybutyryl-CoA 57.6 36 0.00079 31.3 6.9 43 64-108 4-48 (287)
404 cd08289 MDR_yhfp_like Yhfp put 56.9 54 0.0012 29.8 7.9 41 62-103 146-188 (326)
405 COG5379 BtaA S-adenosylmethion 56.1 33 0.00072 32.9 6.2 57 48-106 49-105 (414)
406 COG0863 DNA modification methy 55.7 36 0.00079 31.0 6.5 48 59-108 219-266 (302)
407 COG0287 TyrA Prephenate dehydr 55.4 49 0.0011 31.0 7.3 41 64-104 4-46 (279)
408 cd08256 Zn_ADH2 Alcohol dehydr 55.1 37 0.00081 31.6 6.6 44 61-104 173-217 (350)
409 cd05283 CAD1 Cinnamyl alcohol 54.8 68 0.0015 29.7 8.3 42 61-103 168-210 (337)
410 PTZ00075 Adenosylhomocysteinas 54.4 24 0.00053 35.6 5.4 38 61-99 252-290 (476)
411 cd08260 Zn_ADH6 Alcohol dehydr 54.1 49 0.0011 30.6 7.2 43 60-103 163-206 (345)
412 PRK05786 fabG 3-ketoacyl-(acyl 53.9 1.2E+02 0.0026 26.2 9.3 42 62-104 4-47 (238)
413 cd08241 QOR1 Quinone oxidoredu 53.9 76 0.0017 28.2 8.2 43 60-103 137-181 (323)
414 PF05206 TRM13: Methyltransfer 53.3 19 0.00042 33.4 4.2 39 61-99 17-60 (259)
415 cd08301 alcohol_DH_plants Plan 52.6 27 0.00058 33.0 5.2 45 60-104 185-230 (369)
416 cd08262 Zn_ADH8 Alcohol dehydr 51.0 85 0.0019 28.9 8.3 45 60-104 159-204 (341)
417 COG4121 Uncharacterized conser 50.9 1.1E+02 0.0024 28.4 8.7 78 162-270 147-229 (252)
418 KOG1198 Zinc-binding oxidoredu 50.2 21 0.00045 34.5 4.0 45 59-104 154-200 (347)
419 COG1748 LYS9 Saccharopine dehy 49.8 26 0.00056 34.5 4.7 41 64-105 2-44 (389)
420 PF06016 Reovirus_L2: Reovirus 49.5 50 0.0011 37.2 7.2 59 159-218 862-920 (1289)
421 KOG0023 Alcohol dehydrogenase, 49.3 44 0.00095 32.4 5.9 44 60-104 179-223 (360)
422 PF03686 UPF0146: Uncharacteri 49.2 46 0.001 27.7 5.4 34 62-97 13-47 (127)
423 PRK05708 2-dehydropantoate 2-r 48.8 1.5E+02 0.0032 27.7 9.5 37 64-102 3-41 (305)
424 PRK06197 short chain dehydroge 47.6 1.9E+02 0.0041 26.4 10.0 44 62-106 15-60 (306)
425 PRK08306 dipicolinate synthase 47.3 72 0.0016 29.9 7.1 41 62-103 151-192 (296)
426 PRK03659 glutathione-regulated 46.9 1.7E+02 0.0038 30.2 10.5 39 64-104 401-441 (601)
427 PRK05225 ketol-acid reductoiso 46.6 27 0.00059 35.3 4.3 38 179-225 96-133 (487)
428 PF02826 2-Hacid_dh_C: D-isome 46.5 17 0.00037 31.2 2.6 39 61-100 34-73 (178)
429 PRK07417 arogenate dehydrogena 46.2 1.3E+02 0.0027 27.7 8.5 38 65-104 2-41 (279)
430 cd08235 iditol_2_DH_like L-idi 45.5 97 0.0021 28.5 7.7 43 60-102 163-206 (343)
431 cd08269 Zn_ADH9 Alcohol dehydr 45.4 1.1E+02 0.0024 27.5 7.9 42 61-102 128-170 (312)
432 PRK07066 3-hydroxybutyryl-CoA 45.3 1.2E+02 0.0026 28.9 8.4 43 64-108 8-52 (321)
433 cd08297 CAD3 Cinnamyl alcohol 44.7 1.1E+02 0.0024 28.1 8.0 42 60-102 163-206 (341)
434 PRK07502 cyclohexadienyl dehyd 44.6 1.4E+02 0.0031 27.6 8.7 40 64-103 7-48 (307)
435 cd08243 quinone_oxidoreductase 43.4 1.1E+02 0.0025 27.2 7.7 42 60-102 140-183 (320)
436 cd08238 sorbose_phosphate_red 43.3 44 0.00096 32.3 5.2 46 60-105 173-222 (410)
437 PF12692 Methyltransf_17: S-ad 43.3 35 0.00076 29.4 3.9 31 64-94 30-60 (160)
438 PRK15001 SAM-dependent 23S rib 42.9 1.6E+02 0.0034 28.9 8.9 39 177-222 103-141 (378)
439 cd08252 AL_MDR Arginate lyase 42.7 1.1E+02 0.0024 27.9 7.6 41 63-103 150-192 (336)
440 PF03514 GRAS: GRAS domain fam 41.9 3.4E+02 0.0073 26.4 11.6 49 62-110 110-169 (374)
441 PRK09496 trkA potassium transp 41.9 2.1E+02 0.0046 27.7 9.8 41 62-104 230-272 (453)
442 PRK11730 fadB multifunctional 41.6 3.2E+02 0.0069 29.0 11.6 43 64-108 314-358 (715)
443 cd05286 QOR2 Quinone oxidoredu 41.6 1.4E+02 0.0031 26.3 8.0 42 60-102 134-177 (320)
444 cd08274 MDR9 Medium chain dehy 41.3 1.1E+02 0.0024 28.1 7.4 41 60-102 175-217 (350)
445 TIGR02441 fa_ox_alpha_mit fatt 41.2 2.7E+02 0.0059 29.7 11.0 43 64-108 336-380 (737)
446 TIGR02819 fdhA_non_GSH formald 41.0 52 0.0011 31.8 5.3 45 60-104 183-228 (393)
447 COG5379 BtaA S-adenosylmethion 40.9 61 0.0013 31.2 5.4 59 162-224 308-367 (414)
448 PRK11154 fadJ multifunctional 40.9 3.2E+02 0.0069 29.0 11.5 44 64-108 310-355 (708)
449 TIGR00497 hsdM type I restrict 40.5 3.1E+02 0.0066 27.6 10.9 47 62-108 217-267 (501)
450 COG0686 Ald Alanine dehydrogen 40.4 67 0.0015 31.1 5.7 97 64-221 169-266 (371)
451 KOG2782 Putative SAM dependent 40.3 41 0.00089 31.0 4.1 52 53-106 36-87 (303)
452 PRK07819 3-hydroxybutyryl-CoA 40.3 1.8E+02 0.004 26.9 8.7 43 64-108 6-50 (286)
453 TIGR02437 FadB fatty oxidation 39.7 2.1E+02 0.0046 30.4 9.9 114 64-224 314-429 (714)
454 KOG1197 Predicted quinone oxid 39.4 1.3E+02 0.0027 28.6 7.2 95 61-221 145-243 (336)
455 TIGR02356 adenyl_thiF thiazole 39.1 1.4E+02 0.003 26.2 7.3 35 62-96 20-55 (202)
456 PRK10669 putative cation:proto 38.1 3E+02 0.0065 28.0 10.5 39 64-104 418-458 (558)
457 cd05289 MDR_like_2 alcohol deh 37.6 2.8E+02 0.0062 24.3 9.5 41 60-102 142-184 (309)
458 PRK09260 3-hydroxybutyryl-CoA 37.5 1.2E+02 0.0026 27.8 7.0 42 65-108 3-46 (288)
459 PF07109 Mg-por_mtran_C: Magne 37.2 1.7E+02 0.0036 23.3 6.6 72 197-270 8-82 (97)
460 PRK03562 glutathione-regulated 36.6 3E+02 0.0065 28.7 10.3 39 64-104 401-441 (621)
461 TIGR02817 adh_fam_1 zinc-bindi 36.3 1.5E+02 0.0031 27.1 7.3 41 63-103 149-191 (336)
462 PRK08507 prephenate dehydrogen 35.9 1.8E+02 0.0038 26.5 7.7 39 65-103 2-42 (275)
463 PF07991 IlvN: Acetohydroxy ac 35.4 78 0.0017 27.5 4.9 36 180-224 60-96 (165)
464 KOG1201 Hydroxysteroid 17-beta 34.6 3E+02 0.0065 26.3 9.0 46 61-108 36-84 (300)
465 COG3510 CmcI Cephalosporin hyd 34.6 1.2E+02 0.0025 27.6 5.9 111 53-224 61-181 (237)
466 PF02558 ApbA: Ketopantoate re 34.2 1.8E+02 0.0038 23.5 6.8 37 178-223 65-101 (151)
467 PRK07063 short chain dehydroge 34.0 2.1E+02 0.0046 25.1 7.8 44 62-106 6-51 (260)
468 cd05282 ETR_like 2-enoyl thioe 33.9 1.5E+02 0.0033 26.7 7.0 42 60-102 136-179 (323)
469 cd00757 ThiF_MoeB_HesA_family 33.6 1.4E+02 0.0029 26.7 6.4 35 62-96 20-55 (228)
470 cd08266 Zn_ADH_like1 Alcohol d 33.3 2.2E+02 0.0047 25.6 7.9 41 61-102 165-207 (342)
471 COG4353 Uncharacterized conser 32.9 1.5E+02 0.0032 26.0 6.1 64 198-271 68-131 (192)
472 PRK05808 3-hydroxybutyryl-CoA 32.6 1.4E+02 0.0031 27.2 6.6 42 65-108 5-48 (282)
473 PF01210 NAD_Gly3P_dh_N: NAD-d 32.2 64 0.0014 27.0 3.9 36 179-223 68-103 (157)
474 cd08292 ETR_like_2 2-enoyl thi 32.1 1.7E+02 0.0036 26.5 6.9 42 60-102 137-180 (324)
475 PRK08324 short chain dehydroge 31.7 2.8E+02 0.006 29.0 9.3 42 62-104 421-464 (681)
476 cd08267 MDR1 Medium chain dehy 31.5 3.3E+02 0.0071 24.2 8.7 40 60-101 141-182 (319)
477 PTZ00354 alcohol dehydrogenase 30.5 2.7E+02 0.0058 25.1 8.1 43 60-103 138-182 (334)
478 PRK06130 3-hydroxybutyryl-CoA 30.4 1.6E+02 0.0036 27.1 6.7 42 64-107 5-48 (311)
479 PRK07677 short chain dehydroge 30.3 2.5E+02 0.0054 24.5 7.6 42 63-105 1-44 (252)
480 COG2130 Putative NADP-dependen 30.2 1.7E+02 0.0037 28.3 6.6 96 61-221 149-247 (340)
481 KOG1209 1-Acyl dihydroxyaceton 29.6 61 0.0013 29.9 3.4 34 62-95 6-41 (289)
482 cd01492 Aos1_SUMO Ubiquitin ac 29.4 2.8E+02 0.0061 24.2 7.6 35 62-96 20-55 (197)
483 cd01842 SGNH_hydrolase_like_5 29.4 2E+02 0.0044 25.5 6.5 46 177-223 47-99 (183)
484 PRK06172 short chain dehydroge 28.6 3.1E+02 0.0066 23.9 7.9 44 62-106 6-51 (253)
485 PF03721 UDPG_MGDP_dh_N: UDP-g 28.4 1.2E+02 0.0025 26.4 5.0 22 201-222 98-119 (185)
486 cd08244 MDR_enoyl_red Possible 28.0 3.2E+02 0.007 24.5 8.1 41 61-102 141-183 (324)
487 PRK10458 DNA cytosine methylas 27.9 1.2E+02 0.0026 30.7 5.5 43 63-106 88-130 (467)
488 PRK05867 short chain dehydroge 27.8 2.9E+02 0.0062 24.2 7.5 44 62-106 8-53 (253)
489 TIGR02823 oxido_YhdH putative 27.7 3.2E+02 0.0069 24.7 8.1 42 60-102 142-186 (323)
490 PRK06701 short chain dehydroge 27.4 4.3E+02 0.0094 24.0 8.9 35 61-96 44-80 (290)
491 PRK10754 quinone oxidoreductas 27.2 2.5E+02 0.0053 25.5 7.2 42 60-102 138-181 (327)
492 PLN02545 3-hydroxybutyryl-CoA 27.1 4.9E+02 0.011 23.8 9.6 43 64-108 5-49 (295)
493 PRK07062 short chain dehydroge 26.9 3.1E+02 0.0067 24.1 7.7 44 62-106 7-52 (265)
494 PRK06949 short chain dehydroge 26.9 3.2E+02 0.007 23.7 7.7 45 61-106 7-53 (258)
495 cd05288 PGDH Prostaglandin deh 26.6 3.3E+02 0.0072 24.6 8.0 43 61-104 144-188 (329)
496 PF12242 Eno-Rase_NADH_b: NAD( 26.5 82 0.0018 24.1 3.1 32 63-94 39-72 (78)
497 cd08282 PFDH_like Pseudomonas 26.3 1.3E+02 0.0029 28.4 5.4 44 61-104 175-219 (375)
498 cd05280 MDR_yhdh_yhfp Yhdh and 26.3 2.4E+02 0.0052 25.4 6.9 40 63-103 147-188 (325)
499 PRK07814 short chain dehydroge 26.1 3.3E+02 0.0071 24.0 7.7 44 61-105 8-53 (263)
500 PRK06153 hypothetical protein; 26.1 80 0.0017 31.2 3.8 36 61-96 174-210 (393)
No 1
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=9.6e-35 Score=260.34 Aligned_cols=241 Identities=46% Similarity=0.804 Sum_probs=191.1
Q ss_pred CccccccccccccccccCCCCCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406 28 DVFPFGNYKNYYGYRIGQGLNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR 107 (290)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~ 107 (290)
..|+||||.+||+++ ......++||..+.+.|..+..+|||||.+|.+++.||+.+++..|+|+||++..++.|+++++
T Consensus 25 ~~~~~GNf~~YY~~r-~~~~~~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 25 KPYPYGNFDNYYGFR-LNPGDSDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CCCCcCCccchhhcc-cCCCCCChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 449999999999999 5777888999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhhhhhhhhhhhchhhhhhccCCcc-----hhhhhHHHHHHhh-hcCCCccccCcCcceeEeecccccC----CCCC
Q 047406 108 KIVRTEHNEKRRANASRVEVIEKGDGLE-----KNVTAAQEEKKAI-SRNCSPAERNLFDIVSFKQENFVHG----RDSP 177 (290)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~ 177 (290)
.-...+-.. .++.+. .+..++ ..++. .+.. ...+++.|...|+.-. +...
T Consensus 104 ~~~~~~~~~-------------~~~~~~~~~~~~~~is~--~~~a~~a~t~-----~~p~n~~f~~~n~vle~~dfl~~~ 163 (288)
T KOG2899|consen 104 FPCDHETEV-------------SGKFPASFGVQFGPISQ--RNEADRAFTT-----DFPDNVWFQKENYVLESDDFLDMI 163 (288)
T ss_pred ccccccccc-------------cCCCccccccccccccc--cccccccccc-----cCCcchhcccccEEEecchhhhhc
Confidence 522111110 011111 111111 11111 1112 2223344444443321 1124
Q ss_pred CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHH
Q 047406 178 EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEIL 257 (290)
Q Consensus 178 ~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 257 (290)
...||+|+|..+..|+||+|+++++.++|.+++++|.|||+|+++++||.||.++++..+.+..++..+.+.|+.|...+
T Consensus 164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l 243 (288)
T KOG2899|consen 164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWL 243 (288)
T ss_pred cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHH-cCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406 258 LDK-IGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290 (290)
Q Consensus 258 l~~-~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k 290 (290)
.+. .||+.++.... .++..+++|.|+|.+|+|
T Consensus 244 ~q~~vgle~~e~~~~-~~~~~skgf~R~i~~y~K 276 (288)
T KOG2899|consen 244 NQIVVGLESVEDLGL-IVSAASKGFDRPILLYRK 276 (288)
T ss_pred hhhhhheeeeccccc-cccccCccccceeeeeec
Confidence 776 79999888875 466778999999999997
No 2
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=99.82 E-value=3.9e-21 Score=154.15 Aligned_cols=109 Identities=60% Similarity=1.189 Sum_probs=78.6
Q ss_pred ceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHH
Q 047406 180 YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLD 259 (290)
Q Consensus 180 ~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 259 (290)
.||+|+|..|+.|+||+|||+++..+|.+++.+|+|||+|+++++||.||..+.+..+.+..+|..+.+.|+.|...|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred -HcCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406 260 -KIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290 (290)
Q Consensus 260 -~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k 290 (290)
..||..++.+.. ...+..||+|||.+|+|
T Consensus 81 ~evGF~~~e~~~~--~~~~~~gF~RpI~lf~K 110 (110)
T PF06859_consen 81 PEVGFSSVEELGV--PENSSKGFDRPIYLFRK 110 (110)
T ss_dssp TTT---EEEEE---------------EEEEE-
T ss_pred cccceEEEEEccc--CCCCCCCCCCcEEEEeC
Confidence 589999997776 55667899999999997
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=2.7e-16 Score=124.52 Aligned_cols=109 Identities=26% Similarity=0.447 Sum_probs=89.5
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
|+.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|++++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------------------------------- 47 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE--------------------------------- 47 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---------------------------------
Confidence 57899999999999999999977888999999999999999998743
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch-hhh-hhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS-VTK-WIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~-vl~-~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.....++.+.+.|+ ........+||+|++.. +++ +++ .+....++.++.+.|+|||++
T Consensus 48 ---------------~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~----~~~~~~~l~~~~~~L~pgG~l 107 (112)
T PF12847_consen 48 ---------------EGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTLHFLLP----LDERRRVLERIRRLLKPGGRL 107 (112)
T ss_dssp ---------------TTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSGGGCCH----HHHHHHHHHHHHHHEEEEEEE
T ss_pred ---------------cCCCCCeEEEECcc-ccCcccCCCCCEEEECCCccccccc----hhHHHHHHHHHHHhcCCCcEE
Confidence 33456799999999 32233456799999998 554 222 267789999999999999999
Q ss_pred EEee
Q 047406 220 VLEP 223 (290)
Q Consensus 220 ~i~~ 223 (290)
++..
T Consensus 108 vi~~ 111 (112)
T PF12847_consen 108 VINT 111 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9963
No 4
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.68 E-value=3.6e-15 Score=145.09 Aligned_cols=192 Identities=21% Similarity=0.292 Sum_probs=131.6
Q ss_pred hhhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhccCCCcEEEecCCCChhhHHHHh
Q 047406 13 EEKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEWFEGKDCLDIGCNSGIITIQIAQ 82 (290)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~~~~~~vLDiGcG~G~~~~~la~ 82 (290)
.++-.....|+.++. .+|+.| +.+||+..| .+... || ++.+...+.++.+|||+|||+|.+++.++.
T Consensus 195 ~~~~~~~v~RR~~gePlqYIlG-~~~F~G~~f--~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~ 271 (423)
T PRK14966 195 RQRADRLAQRRLNGEPVAYILG-VREFYGRRF--AVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVAL 271 (423)
T ss_pred HHHHHHHHHHHHcCCCceeEee-eeeecCcEE--EeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHH
Confidence 344444454555555 999999 789999777 33322 33 233333445677999999999999999998
Q ss_pred HcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcc
Q 047406 83 KFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDI 162 (290)
Q Consensus 83 ~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (290)
..+..+|+++|+|+.+++.|++++.. .+. +
T Consensus 272 ~~p~a~VtAVDiS~~ALe~AreNa~~------------------------------------------------~g~--r 301 (423)
T PRK14966 272 ERPDAFVRASDISPPALETARKNAAD------------------------------------------------LGA--R 301 (423)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHH------------------------------------------------cCC--c
Confidence 88888999999999999999998765 222 5
Q ss_pred eeEeecccccCCCCCCCceeEEEEchhh-------------h---hhhhcCCchHH---HHHHHHHHhhcCCCcEEEEee
Q 047406 163 VSFKQENFVHGRDSPEKYYDAILCLSVT-------------K---WIHLNWGDDGL---ITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 163 i~~~~~d~~~~~~~~~~~fD~I~~~~vl-------------~---~~~l~~~~~~~---~~~l~~~~~~LkpgG~l~i~~ 223 (290)
+.+.+.|+.+......++||+|+|+.-- . ...++.+.+++ +.++..+.+.|+|||.++++.
T Consensus 302 V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 302 VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8889999865311123579999995321 0 12233344444 588888999999999999986
Q ss_pred CCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCCCCCCCccee
Q 047406 224 QPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIF 286 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~ 286 (290)
+. ...+-...++.+.||..+++..+ -.|..|.+.
T Consensus 382 G~-----------------------~Q~e~V~~ll~~~Gf~~v~v~kD------l~G~dR~v~ 415 (423)
T PRK14966 382 GF-----------------------DQGAAVRGVLAENGFSGVETLPD------LAGLDRVTL 415 (423)
T ss_pred Cc-----------------------cHHHHHHHHHHHCCCcEEEEEEc------CCCCcEEEE
Confidence 51 11222333788899998887766 344555544
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=8.5e-16 Score=139.70 Aligned_cols=104 Identities=20% Similarity=0.433 Sum_probs=93.8
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
+|.+|||||||||.++..+++..+..+|+++|+|+.||+.|++.+..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~--------------------------------- 97 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK--------------------------------- 97 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc---------------------------------
Confidence 79999999999999999999998877999999999999999997654
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.+... ++|..+|+.+ +|+++.+||+|.|.+.++++ .+.+..|++++|+|||||.+++
T Consensus 98 ---------------~~~~~-i~fv~~dAe~-LPf~D~sFD~vt~~fglrnv------~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 98 ---------------KGVQN-VEFVVGDAEN-LPFPDNSFDAVTISFGLRNV------TDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred ---------------cCccc-eEEEEechhh-CCCCCCccCEEEeeehhhcC------CCHHHHHHHHHHhhcCCeEEEE
Confidence 23333 9999999977 79999999999999999877 4789999999999999998888
No 6
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=1e-15 Score=139.62 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=109.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~-------------------------------- 88 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEA-------------------------------- 88 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence 35679999999999999999886 45899999999999999987654
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++..++.+.+.|+.+..+.+.++||+|+|..+++|+ .+...++.++.++|+|||+++
T Consensus 89 ----------------~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~------~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 89 ----------------KGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV------ADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred ----------------cCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh------CCHHHHHHHHHHHcCCCeEEE
Confidence 3344568888888866323456789999999999877 355789999999999999999
Q ss_pred EeeCCCchh-hhh------hhhhhhhh----cc-ccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 221 LEPQPWVSY-EKN------RRVSETTA----TN-FQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 221 i~~~~~~~~-~~~------~~~~~~~~----~~-~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+...+.... ... ........ .. .+...+.++++.+ +++++||+++...+.
T Consensus 147 i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~-~l~~aGf~~~~~~gi 208 (255)
T PRK11036 147 LMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQ-WLEEAGWQIMGKTGV 208 (255)
T ss_pred EEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHH-HHHHCCCeEeeeeeE
Confidence 864332211 000 00000000 00 1112355666766 899999999876554
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=1.4e-15 Score=139.77 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=89.5
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|||+|||+|.++..++...+ ..+|+|+|+|+++++.|+......
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~----------------------------- 121 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK----------------------------- 121 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh-----------------------------
Confidence 35788999999999999998888754 458999999999999998754210
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
......++.+.+.|..+ ++.++++||+|+|..+++++ ++...++.++.++|+|||.
T Consensus 122 -----------------~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~~~~~l~~~------~d~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 122 -----------------AKSCYKNIEWIEGDATD-LPFDDCYFDAITMGYGLRNV------VDRLKAMQEMYRVLKPGSR 177 (261)
T ss_pred -----------------hhccCCCeEEEEccccc-CCCCCCCEeEEEEecccccC------CCHHHHHHHHHHHcCcCcE
Confidence 01122358899999866 57777899999999999765 3678999999999999999
Q ss_pred EEEee
Q 047406 219 FVLEP 223 (290)
Q Consensus 219 l~i~~ 223 (290)
+++..
T Consensus 178 l~i~d 182 (261)
T PLN02233 178 VSILD 182 (261)
T ss_pred EEEEE
Confidence 98854
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.67 E-value=3.4e-16 Score=142.04 Aligned_cols=106 Identities=23% Similarity=0.446 Sum_probs=79.3
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
..+|.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++.+..
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~------------------------------ 94 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR------------------------------ 94 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH------------------------------
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh------------------------------
Confidence 46789999999999999999988754 46999999999999999998765
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.+. .++++.++|..+ +|.++++||+|+|.+.++.+ .+..+.+++++++|||||.
T Consensus 95 ------------------~~~-~~i~~v~~da~~-lp~~d~sfD~v~~~fglrn~------~d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 95 ------------------EGL-QNIEFVQGDAED-LPFPDNSFDAVTCSFGLRNF------PDRERALREMYRVLKPGGR 148 (233)
T ss_dssp ------------------TT---SEEEEE-BTTB---S-TT-EEEEEEES-GGG-------SSHHHHHHHHHHHEEEEEE
T ss_pred ------------------hCC-CCeeEEEcCHHH-hcCCCCceeEEEHHhhHHhh------CCHHHHHHHHHHHcCCCeE
Confidence 222 269999999977 78889999999999998655 4578899999999999999
Q ss_pred EEE
Q 047406 219 FVL 221 (290)
Q Consensus 219 l~i 221 (290)
+++
T Consensus 149 l~i 151 (233)
T PF01209_consen 149 LVI 151 (233)
T ss_dssp EEE
T ss_pred EEE
Confidence 988
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.66 E-value=2.2e-15 Score=143.55 Aligned_cols=153 Identities=15% Similarity=0.265 Sum_probs=110.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|..+..+++.+ ..+|+|+|+|+.+++.|+.....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~-------------------------------- 163 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAA-------------------------------- 163 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence 467899999999999999999876 45999999999999999887654
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++..++.|...|+.+ .+.++++||+|+|..+++|+ .+...++.++.++|+|||.++
T Consensus 164 ----------------~g~~~~v~~~~~D~~~-~~~~~~~FD~V~s~~~~~h~------~d~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 164 ----------------QGLSDKVSFQVADALN-QPFEDGQFDLVWSMESGEHM------PDKRKFVQELARVAAPGGRII 220 (340)
T ss_pred ----------------cCCCCceEEEEcCccc-CCCCCCCccEEEECCchhcc------CCHHHHHHHHHHHcCCCcEEE
Confidence 3444568999999876 56677899999999998655 356789999999999999999
Q ss_pred EeeCCCchhhhh--------hhhhhhhhcccccc-ccCchhHHHHHHHHcCCeeeEecc
Q 047406 221 LEPQPWVSYEKN--------RRVSETTATNFQNI-KLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 221 i~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
+........... ......+...+... ....+++.+ +++++||..++...
T Consensus 221 i~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~-~l~~aGf~~v~~~d 278 (340)
T PLN02244 221 IVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVK-LAESLGLQDIKTED 278 (340)
T ss_pred EEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHH-HHHHCCCCeeEeee
Confidence 964322111100 00011111111111 124556666 89999999887654
No 10
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.66 E-value=6.8e-15 Score=136.72 Aligned_cols=194 Identities=28% Similarity=0.387 Sum_probs=131.3
Q ss_pred hhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhc--c-CCCcEEEecCCCChhhHHH
Q 047406 14 EKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEW--F-EGKDCLDIGCNSGIITIQI 80 (290)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~--~-~~~~vLDiGcG~G~~~~~l 80 (290)
++-.....++.++. .+|+.| ...||+..|. +... || ++.+...+ . ++.+|||+|||+|.+++.+
T Consensus 56 ~~~~~~~~~r~~~~pl~yi~g-~~~f~g~~f~--v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~l 132 (284)
T TIGR00536 56 ERIFRLVLRRVKGVPVAYLLG-SKEFYGLEFF--VNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALAL 132 (284)
T ss_pred HHHHHHHHHHHcCCCHHHHhC-cceEcCeEEE--ECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHH
Confidence 34445455555555 899999 6889887663 2222 33 22222222 1 2268999999999999999
Q ss_pred HhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcC
Q 047406 81 AQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF 160 (290)
Q Consensus 81 a~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
+..++..+|+|+|+|+.+++.|+.++.. .++.
T Consensus 133 a~~~~~~~v~avDis~~al~~a~~n~~~------------------------------------------------~~~~ 164 (284)
T TIGR00536 133 AYEFPNAEVIAVDISPDALAVAEENAEK------------------------------------------------NQLE 164 (284)
T ss_pred HHHCCCCEEEEEECCHHHHHHHHHHHHH------------------------------------------------cCCC
Confidence 9988878999999999999999998765 3333
Q ss_pred cceeEeecccccCCCCCCCceeEEEEch-------------hhh---hhhhcCCchH---HHHHHHHHHhhcCCCcEEEE
Q 047406 161 DIVSFKQENFVHGRDSPEKYYDAILCLS-------------VTK---WIHLNWGDDG---LITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~-------------vl~---~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i 221 (290)
.++.+.+.|+.+.. +..+||+|+|+. +.+ +..+..+.++ ...++.++.+.|+|||++++
T Consensus 165 ~~v~~~~~d~~~~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 165 HRVEFIQSNLFEPL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred CcEEEEECchhccC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 45889999987632 334799999951 121 1233334443 46899999999999999999
Q ss_pred eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHH-HcCCeeeEeccCCCCCCCCCCCCcceeeec
Q 047406 222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLD-KIGFRTVEDIGSGGLSSSKTGFNRPIFLFR 289 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~ 289 (290)
+.+.+.. +...+ ++. +.||..++++.+ ..|..|.+...+
T Consensus 243 e~g~~q~----------------------~~~~~-~~~~~~~~~~~~~~~D------~~g~~R~~~~~~ 282 (284)
T TIGR00536 243 EIGNWQQ----------------------KSLKE-LLRIKFTWYDVENGRD------LNGKERVVLGFY 282 (284)
T ss_pred EECccHH----------------------HHHHH-HHHhcCCCceeEEecC------CCCCceEEEEEe
Confidence 8773321 22333 455 578987777665 455666665543
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.66 E-value=3.6e-15 Score=137.29 Aligned_cols=152 Identities=20% Similarity=0.287 Sum_probs=107.3
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.++.+|||||||+|..+..++..+ ..+|+|+|+|+.+++.|+.....
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------------------------------- 97 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------------------------------- 97 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-------------------------------
Confidence 3678999999999999999988765 45899999999999999875321
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
...+.+...|+.+ .+.++++||+|++..++.|+ +.++...+++++.++|+|||.+
T Consensus 98 --------------------~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~----~~~d~~~~l~~i~r~LkPGG~l 152 (263)
T PTZ00098 98 --------------------KNKIEFEANDILK-KDFPENTFDMIYSRDAILHL----SYADKKKLFEKCYKWLKPNGIL 152 (263)
T ss_pred --------------------CCceEEEECCccc-CCCCCCCeEEEEEhhhHHhC----CHHHHHHHHHHHHHHcCCCcEE
Confidence 2358888889875 45667899999998887433 2347889999999999999999
Q ss_pred EEeeCCCchhhhh-hhhhhhhhc-cccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 220 VLEPQPWVSYEKN-RRVSETTAT-NFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 220 ~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++........... ......... .+. ...+.++.+ +++.+||+.++....
T Consensus 153 vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~l~~aGF~~v~~~d~ 203 (263)
T PTZ00098 153 LITDYCADKIENWDEEFKAYIKKRKYT--LIPIQEYGD-LIKSCNFQNVVAKDI 203 (263)
T ss_pred EEEEeccccccCcHHHHHHHHHhcCCC--CCCHHHHHH-HHHHCCCCeeeEEeC
Confidence 9975422111000 011111111 111 134455655 899999999887653
No 12
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.65 E-value=5.7e-15 Score=147.65 Aligned_cols=182 Identities=20% Similarity=0.251 Sum_probs=127.1
Q ss_pred hhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhc-----------------------
Q 047406 14 EKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEW----------------------- 60 (290)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~----------------------- 60 (290)
++-.....|+.++. .+|+.| +.+||+..| .++.. || .+.+....
T Consensus 57 ~~~~~~~~rr~~~ePlqYI~G-~~~F~g~~f--~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (506)
T PRK01544 57 EAFEKLLERRLKHEPIAYITG-VKEFYSREF--IVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISS 133 (506)
T ss_pred HHHHHHHHHHHcCCCHHHHhC-cCEEcCcEE--EeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 34444455555555 999999 899999888 55555 44 22221111
Q ss_pred ---cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 61 ---FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 61 ---~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
.++.+|||+|||+|.+++.++..++..+|+++|+|+.+++.|+.++..
T Consensus 134 ~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~----------------------------- 184 (506)
T PRK01544 134 NCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK----------------------------- 184 (506)
T ss_pred cccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH-----------------------------
Confidence 134689999999999999999888888999999999999999998765
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch--------------hhh---hhhhcCCch
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS--------------VTK---WIHLNWGDD 200 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~--------------vl~---~~~l~~~~~ 200 (290)
.++...+.+.+.|+.+.. +.++||+|+|+. +.. ...++.+.+
T Consensus 185 -------------------~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~d 243 (506)
T PRK01544 185 -------------------YEVTDRIQIIHSNWFENI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEED 243 (506)
T ss_pred -------------------cCCccceeeeecchhhhC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCcc
Confidence 334446888888876532 346899999942 111 123444555
Q ss_pred HH---HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 201 GL---ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 201 ~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++ ..++.++.++|+|||.++++.+ ....+....++.+.||..++++.+
T Consensus 244 Gl~~~~~il~~a~~~L~~gG~l~lEig-----------------------~~q~~~v~~~~~~~g~~~~~~~~D 294 (506)
T PRK01544 244 GLQAYFIIAENAKQFLKPNGKIILEIG-----------------------FKQEEAVTQIFLDHGYNIESVYKD 294 (506)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEC-----------------------CchHHHHHHHHHhcCCCceEEEec
Confidence 54 5688999999999999999765 111223344677889987766554
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=3.1e-15 Score=147.72 Aligned_cols=175 Identities=20% Similarity=0.284 Sum_probs=118.1
Q ss_pred ccccccccccccccCCCCCch-hhHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406 31 PFGNYKNYYGYRIGQGLNEDP-RFKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR 107 (290)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~ 107 (290)
+.| +..||+..+ .+...- ..+.+... +.++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|+.+..
T Consensus 235 i~~-~~~f~g~~~--~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 235 ILR-YERVFGEGF--VSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI 310 (475)
T ss_pred HHH-HHHHhCCCC--CCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh
Confidence 667 788887655 333321 11112111 3567899999999999999998876 4589999999999999987543
Q ss_pred HHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc
Q 047406 108 KIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL 187 (290)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~ 187 (290)
. ....+.|...|+.+ .+.++++||+|+|.
T Consensus 311 ~--------------------------------------------------~~~~v~~~~~d~~~-~~~~~~~fD~I~s~ 339 (475)
T PLN02336 311 G--------------------------------------------------RKCSVEFEVADCTK-KTYPDNSFDVIYSR 339 (475)
T ss_pred c--------------------------------------------------CCCceEEEEcCccc-CCCCCCCEEEEEEC
Confidence 2 22358899999876 35566789999999
Q ss_pred hhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhcccccccc-CchhHHHHHHHHcCCeee
Q 047406 188 SVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKL-YPKEFQEILLDKIGFRTV 266 (290)
Q Consensus 188 ~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~Gf~~v 266 (290)
.+++|+ .+...++.+++++|+|||.+++..................... ...+ ...++.+ +++++||+++
T Consensus 340 ~~l~h~------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~-~l~~aGF~~i 410 (475)
T PLN02336 340 DTILHI------QDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR--GYDLHDVQAYGQ-MLKDAGFDDV 410 (475)
T ss_pred Cccccc------CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc--CCCCCCHHHHHH-HHHHCCCeee
Confidence 998665 3578999999999999999999754221111111111111111 1122 3445544 8999999988
Q ss_pred Eec
Q 047406 267 EDI 269 (290)
Q Consensus 267 ~~~ 269 (290)
+..
T Consensus 411 ~~~ 413 (475)
T PLN02336 411 IAE 413 (475)
T ss_pred eee
Confidence 654
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.64 E-value=1.4e-15 Score=126.75 Aligned_cols=143 Identities=23% Similarity=0.404 Sum_probs=97.3
Q ss_pred hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406 56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE 135 (290)
Q Consensus 56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (290)
+.+...++.+|||+|||+|.++..++.. +. +++|+|+++.+++. .
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~------~--------------------------- 60 (161)
T PF13489_consen 16 LLPRLKPGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK------R--------------------------- 60 (161)
T ss_dssp HHTCTTTTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH------T---------------------------
T ss_pred HhcccCCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh------h---------------------------
Confidence 3333467899999999999999998765 33 99999999998877 1
Q ss_pred hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406 136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP 215 (290)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp 215 (290)
...+...+... ...+.++||+|+|..+++|+ ++...++.++.++|+|
T Consensus 61 --------------------------~~~~~~~~~~~-~~~~~~~fD~i~~~~~l~~~------~d~~~~l~~l~~~Lkp 107 (161)
T PF13489_consen 61 --------------------------NVVFDNFDAQD-PPFPDGSFDLIICNDVLEHL------PDPEEFLKELSRLLKP 107 (161)
T ss_dssp --------------------------TSEEEEEECHT-HHCHSSSEEEEEEESSGGGS------SHHHHHHHHHHHCEEE
T ss_pred --------------------------hhhhhhhhhhh-hhccccchhhHhhHHHHhhc------ccHHHHHHHHHHhcCC
Confidence 01111111111 22356899999999999887 3689999999999999
Q ss_pred CcEEEEeeCCCchhhhhhhhhhhhhcc--ccccccCchhHHHHHHHHcCCeeeE
Q 047406 216 GGIFVLEPQPWVSYEKNRRVSETTATN--FQNIKLYPKEFQEILLDKIGFRTVE 267 (290)
Q Consensus 216 gG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~Gf~~v~ 267 (290)
||++++..+.-..... .....+.... ..+..+.+.+....+++++||++++
T Consensus 108 gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 108 GGYLVISDPNRDDPSP-RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EEEEEEEEEBTTSHHH-HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEEEcCCcchhh-hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999997653211111 1111111111 1444555655555699999999986
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.64 E-value=4.1e-15 Score=140.90 Aligned_cols=152 Identities=19% Similarity=0.279 Sum_probs=107.4
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||||||+|.++..+++. ..+|+|+|+++.+++.|+.+...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~--------------------------------- 175 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADM--------------------------------- 175 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHh---------------------------------
Confidence 5679999999999999988864 45899999999999999876443
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
......+.+.+.|+.+ ++...+.||+|+|..+++|+ .+...++.++.++|+|||.+++
T Consensus 176 ---------------~~~~~~i~~~~~dae~-l~~~~~~FD~Vi~~~vLeHv------~d~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 176 ---------------DPVTSTIEYLCTTAEK-LADEGRKFDAVLSLEVIEHV------ANPAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred ---------------cCcccceeEEecCHHH-hhhccCCCCEEEEhhHHHhc------CCHHHHHHHHHHHcCCCcEEEE
Confidence 1222358888888755 45556789999999999776 3568999999999999999999
Q ss_pred eeCCCc--hhhhh----hhhhhhhhcccc-cc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406 222 EPQPWV--SYEKN----RRVSETTATNFQ-NI-KLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 222 ~~~~~~--~~~~~----~~~~~~~~~~~~-~~-~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
...+-. ++... ..+..+.....+ .. .+.++++.. +++++||+++++.+-
T Consensus 234 st~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~-lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 234 STINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSM-ILQRASVDVKEMAGF 290 (322)
T ss_pred EECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHH-HHHHcCCeEEEEeee
Confidence 765422 11111 011111111111 11 244556655 899999999988543
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=4.6e-15 Score=124.77 Aligned_cols=108 Identities=25% Similarity=0.396 Sum_probs=90.7
Q ss_pred cCCCcEEEecCCCChhhHHHH-hHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIA-QKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la-~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
..+.+|||+|||+|.++..++ +..+..+++|+|+|+.+++.|+..+..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~------------------------------- 50 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE------------------------------- 50 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-------------------------------
Confidence 357899999999999999999 445677999999999999999998765
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.++. ++.|.+.|+.+ ++ .+ ..||+|++..+++|+ .+...+++++.++|+++|
T Consensus 51 -----------------~~~~-ni~~~~~d~~~-l~~~~~-~~~D~I~~~~~l~~~------~~~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 51 -----------------LGLD-NIEFIQGDIED-LPQELE-EKFDIIISNGVLHHF------PDPEKVLKNIIRLLKPGG 104 (152)
T ss_dssp -----------------TTST-TEEEEESBTTC-GCGCSS-TTEEEEEEESTGGGT------SHHHHHHHHHHHHEEEEE
T ss_pred -----------------cccc-ccceEEeehhc-cccccC-CCeeEEEEcCchhhc------cCHHHHHHHHHHHcCCCc
Confidence 3333 69999999988 44 33 789999999999766 467899999999999999
Q ss_pred EEEEeeCC
Q 047406 218 IFVLEPQP 225 (290)
Q Consensus 218 ~l~i~~~~ 225 (290)
++++....
T Consensus 105 ~~i~~~~~ 112 (152)
T PF13847_consen 105 ILIISDPN 112 (152)
T ss_dssp EEEEEEEE
T ss_pred EEEEEECC
Confidence 99997654
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.63 E-value=9.5e-15 Score=130.51 Aligned_cols=108 Identities=16% Similarity=0.302 Sum_probs=88.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.++.+|||+|||+|.++..++...+ ..+|+|+|+|+.+++.|+.++..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------------------------- 92 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD------------------------------- 92 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh-------------------------------
Confidence 4678999999999999999988763 46999999999999999987653
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.++ .++.+...|..+ .+.+.++||+|++..+++|+ ++...++.++.++|+|||.+
T Consensus 93 -----------------~~~-~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~------~~~~~~l~~~~~~Lk~gG~l 147 (231)
T TIGR02752 93 -----------------AGL-HNVELVHGNAME-LPFDDNSFDYVTIGFGLRNV------PDYMQVLREMYRVVKPGGKV 147 (231)
T ss_pred -----------------cCC-CceEEEEechhc-CCCCCCCccEEEEecccccC------CCHHHHHHHHHHHcCcCeEE
Confidence 222 358888888866 45566899999999888765 34678999999999999999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
++...
T Consensus 148 ~~~~~ 152 (231)
T TIGR02752 148 VCLET 152 (231)
T ss_pred EEEEC
Confidence 98543
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.62 E-value=2.7e-15 Score=113.97 Aligned_cols=95 Identities=29% Similarity=0.548 Sum_probs=79.0
Q ss_pred EEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHH
Q 047406 67 LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKK 146 (290)
Q Consensus 67 LDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (290)
||+|||+|..+..+++. +..+++++|+|+.+++.+++....
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------------------------------------- 41 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------------------------------------- 41 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT--------------------------------------
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc--------------------------------------
Confidence 89999999999999987 677999999999999999885432
Q ss_pred hhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 147 AISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 147 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
..+.+...|+.+ ++.++++||+|+|..+++|+ ++...+++++.++|||||+++|
T Consensus 42 --------------~~~~~~~~d~~~-l~~~~~sfD~v~~~~~~~~~------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 42 --------------EGVSFRQGDAED-LPFPDNSFDVVFSNSVLHHL------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --------------STEEEEESBTTS-SSS-TT-EEEEEEESHGGGS------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------------cCchheeehHHh-Cccccccccccccccceeec------cCHHHHHHHHHHHcCcCeEEeC
Confidence 234588888876 58888999999999999876 5889999999999999999986
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=5.9e-15 Score=134.35 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=88.8
Q ss_pred ccCCCcEEEecCCCChhhHHHHhH--cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQK--FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
..++.+|||+|||+|..+..+++. .+..+++|+|+|+.+++.|+.++..
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~----------------------------- 104 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA----------------------------- 104 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-----------------------------
Confidence 457889999999999999888874 4667999999999999999998764
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.+...++.+.+.|+.+ .+. ..+|+|+|..++|+++ .+....++.++++.|+|||
T Consensus 105 -------------------~~~~~~v~~~~~d~~~-~~~--~~~D~vv~~~~l~~l~----~~~~~~~l~~i~~~LkpGG 158 (247)
T PRK15451 105 -------------------YKAPTPVDVIEGDIRD-IAI--ENASMVVLNFTLQFLE----PSERQALLDKIYQGLNPGG 158 (247)
T ss_pred -------------------cCCCCCeEEEeCChhh-CCC--CCCCEEehhhHHHhCC----HHHHHHHHHHHHHhcCCCC
Confidence 2233468888988865 232 4599999999998764 3556899999999999999
Q ss_pred EEEEee
Q 047406 218 IFVLEP 223 (290)
Q Consensus 218 ~l~i~~ 223 (290)
.|++..
T Consensus 159 ~l~l~e 164 (247)
T PRK15451 159 ALVLSE 164 (247)
T ss_pred EEEEEE
Confidence 999964
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=7.9e-15 Score=133.72 Aligned_cols=99 Identities=20% Similarity=0.335 Sum_probs=83.7
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.|+..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------------------------------- 72 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------------------------------- 72 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------------------------------
Confidence 467899999999999999999988777999999999999988541
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.+.+.+.|+.+ ++ +.++||+|+|..+++|+ ++...++.++.++|+|||.++
T Consensus 73 ---------------------~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~------~d~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 73 ---------------------GVDARTGDVRD-WK-PKPDTDVVVSNAALQWV------PEHADLLVRWVDELAPGSWIA 123 (255)
T ss_pred ---------------------CCcEEEcChhh-CC-CCCCceEEEEehhhhhC------CCHHHHHHHHHHhCCCCcEEE
Confidence 25677788754 22 45789999999999887 356889999999999999999
Q ss_pred Eee
Q 047406 221 LEP 223 (290)
Q Consensus 221 i~~ 223 (290)
+..
T Consensus 124 ~~~ 126 (255)
T PRK14103 124 VQV 126 (255)
T ss_pred EEc
Confidence 964
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.62 E-value=8.2e-15 Score=138.81 Aligned_cols=153 Identities=17% Similarity=0.229 Sum_probs=103.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..+.+|||||||+|.++..++...+ ..|+|+|+|+.++..++.....
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~-------------------------------- 167 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKL-------------------------------- 167 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHh--------------------------------
Confidence 4678999999999999999888744 4799999999888665442211
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.....++.+...++.+ ++. .+.||+|+|..+++|. .+...+++++++.|+|||.++
T Consensus 168 ----------------~~~~~~i~~~~~d~e~-lp~-~~~FD~V~s~~vl~H~------~dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 168 ----------------LGNDQRAHLLPLGIEQ-LPA-LKAFDTVFSMGVLYHR------RSPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred ----------------cCCCCCeEEEeCCHHH-CCC-cCCcCEEEECChhhcc------CCHHHHHHHHHHhcCCCcEEE
Confidence 0112257888888765 444 6789999999999654 467889999999999999999
Q ss_pred EeeCCCchhhhhhhhhhhhhcccccccc--CchhHHHHHHHHcCCeeeEeccC
Q 047406 221 LEPQPWVSYEKNRRVSETTATNFQNIKL--YPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++....................+.++.+ ...++.. +++++||+.+++...
T Consensus 224 l~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~-~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 224 LETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKN-WLERAGFKDVRIVDV 275 (322)
T ss_pred EEEEEecCCCccccCchhHHhcCccceeCCCHHHHHH-HHHHcCCceEEEEeC
Confidence 9643211111110011111111222222 3345555 899999999988765
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.62 E-value=1e-14 Score=131.58 Aligned_cols=109 Identities=20% Similarity=0.321 Sum_probs=89.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHc--CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKF--NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
.++.+|||+|||+|..+..+++.+ +..+++|+|+|+.+++.|+.++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~------------------------------ 101 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA------------------------------ 101 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh------------------------------
Confidence 577899999999999999988864 567999999999999999987654
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.....++.+.+.|+.+. +. ..+|+|+|..++||++ +++...++.++++.|+|||.
T Consensus 102 ------------------~~~~~~v~~~~~d~~~~-~~--~~~d~v~~~~~l~~~~----~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 102 ------------------YHSEIPVEILCNDIRHV-EI--KNASMVILNFTLQFLP----PEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred ------------------cCCCCCeEEEECChhhC-CC--CCCCEEeeecchhhCC----HHHHHHHHHHHHHhcCCCeE
Confidence 12223578889998663 32 4589999999998774 35678999999999999999
Q ss_pred EEEeeC
Q 047406 219 FVLEPQ 224 (290)
Q Consensus 219 l~i~~~ 224 (290)
+++...
T Consensus 157 l~i~d~ 162 (239)
T TIGR00740 157 LVLSEK 162 (239)
T ss_pred EEEeec
Confidence 999754
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=1.3e-14 Score=134.63 Aligned_cols=155 Identities=22% Similarity=0.315 Sum_probs=105.0
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.+|.+|||||||.|.+++.+|++++ .+|+|+++|+++.+.+++.+..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~------------------------------- 107 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIRE------------------------------- 107 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHC-------------------------------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHh-------------------------------
Confidence 57999999999999999999999985 4899999999999999998765
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.++.+.+.+...|+.+. +.+||.|+|..++.++ +.+....+++++.++|+|||.+
T Consensus 108 -----------------~gl~~~v~v~~~D~~~~----~~~fD~IvSi~~~Ehv----g~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 108 -----------------AGLEDRVEVRLQDYRDL----PGKFDRIVSIEMFEHV----GRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp -----------------STSSSTEEEEES-GGG-------S-SEEEEESEGGGT----CGGGHHHHHHHHHHHSETTEEE
T ss_pred -----------------cCCCCceEEEEeecccc----CCCCCEEEEEechhhc----ChhHHHHHHHHHHHhcCCCcEE
Confidence 56677899999998763 2399999999999655 3567899999999999999999
Q ss_pred EEeeCCCchhhhh--hhh-hhhhhcc-ccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 220 VLEPQPWVSYEKN--RRV-SETTATN-FQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 220 ~i~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++..-........ ... ..++..+ |+.-.+.+.......++++||++..+...
T Consensus 163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 163 VLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp EEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred EEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 9854322111111 111 1344443 56555544443343788999998876543
No 24
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.60 E-value=4.1e-15 Score=134.37 Aligned_cols=151 Identities=21% Similarity=0.347 Sum_probs=105.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.+|.+|||+|||-|.++..+|+. +.+|+|+|+++.+++.|+.+...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e-------------------------------- 103 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALE-------------------------------- 103 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhh--------------------------------
Confidence 48999999999999999999987 46999999999999999987654
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++ .+++.+....+ +....++||+|+|..|++|+ ++...++..|.+++||||+++
T Consensus 104 ----------------~gv--~i~y~~~~~ed-l~~~~~~FDvV~cmEVlEHv------~dp~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 104 ----------------SGV--NIDYRQATVED-LASAGGQFDVVTCMEVLEHV------PDPESFLRACAKLVKPGGILF 158 (243)
T ss_pred ----------------ccc--cccchhhhHHH-HHhcCCCccEEEEhhHHHcc------CCHHHHHHHHHHHcCCCcEEE
Confidence 222 14444444433 23334899999999999765 577889999999999999999
Q ss_pred EeeCCC--chhhhhhhhhhhhhc-----ccccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406 221 LEPQPW--VSYEKNRRVSETTAT-----NFQNI-KLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 221 i~~~~~--~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++..+. .++....-..+.... ..+.- .+.+++..+ .+..+|+.+....+-
T Consensus 159 ~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~-~~~~~~~~~~~~~g~ 216 (243)
T COG2227 159 LSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIR-WLLGANLKIIDRKGL 216 (243)
T ss_pred EeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHH-hcccCCceEEeecce
Confidence 987652 222222111111111 11111 245566665 566688887766554
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=2.3e-14 Score=133.00 Aligned_cols=153 Identities=21% Similarity=0.332 Sum_probs=117.3
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.+|++|||||||.|..++.+|+++ +.+|+|+++|+++.+.+++.+..
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~------------------------------- 117 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAA------------------------------- 117 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHH-------------------------------
Confidence 4799999999999999999999998 46999999999999999998876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.++.+++++...|+.+ ..++||.|++..+++|+. .+.....|+++.++|+|||.+
T Consensus 118 -----------------~gl~~~v~v~l~d~rd----~~e~fDrIvSvgmfEhvg----~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 118 -----------------RGLEDNVEVRLQDYRD----FEEPFDRIVSVGMFEHVG----KENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred -----------------cCCCcccEEEeccccc----cccccceeeehhhHHHhC----cccHHHHHHHHHhhcCCCceE
Confidence 5556678899888866 345599999999998773 577899999999999999999
Q ss_pred EEeeCCCchhhhhh-hhhhhhh-ccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 220 VLEPQPWVSYEKNR-RVSETTA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 220 ~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++..-.-. .... ....++. .-|++-.+.+.........++||.+.....-
T Consensus 173 llh~I~~~--~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 173 LLHSITGP--DQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred EEEEecCC--CcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence 99542211 1111 3333333 3466655555555554688999998766543
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.60 E-value=2.9e-14 Score=126.85 Aligned_cols=145 Identities=21% Similarity=0.296 Sum_probs=105.9
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
++|||||||+|..+..+++.++..+++|+|+|+.+++.++.++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~----------------------------------- 45 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRA----------------------------------- 45 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-----------------------------------
Confidence 479999999999999999988767999999999999999987654
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
.++...+.+...|+... +. .++||+|++..+++++ .+...++.++.++|+|||.+++..
T Consensus 46 -------------~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 46 -------------LGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVIHHI------KDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred -------------cCCCcceEEEecccccC-CC-CCCCCEeehHHHHHhC------CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 34555788888888553 33 3589999999999765 346899999999999999999964
Q ss_pred CCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 224 QPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
..-..... .. ............++.+ ++.++||++++....
T Consensus 105 ~~~~~~~~---~~---~~~~~~~~~s~~~~~~-~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 105 FIANLLSA---IE---HEETTSYLVTREEWAE-LLARNNLRVVEGVDA 145 (224)
T ss_pred cccccCcc---cc---ccccccccCCHHHHHH-HHHHCCCeEEEeEEC
Confidence 31100000 00 0001111234455655 789999999887654
No 27
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.2e-13 Score=128.49 Aligned_cols=182 Identities=24% Similarity=0.353 Sum_probs=124.7
Q ss_pred HhhhhHHHHHhhhcCC-CccccccccccccccccCCCCCc---hh------hHHhhhhccCCC-cEEEecCCCChhhHHH
Q 047406 12 EEEKGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKKEWFEGK-DCLDIGCNSGIITIQI 80 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~~~~~~~-~vLDiGcG~G~~~~~l 80 (290)
+.++-.....+..++. .+|+.| ..+|++..+ .+.+. || ++.+........ +|||+|||||.+++.+
T Consensus 52 ~~~~~~~~~~rr~~~~P~~yi~g-~~~f~gl~~--~v~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~l 128 (280)
T COG2890 52 ELERLRELLERRAEGEPVAYILG-SAEFGGLRF--KVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIAL 128 (280)
T ss_pred HHHHHHHHHHHHHCCCCHhHhhc-cCeecceee--eeCCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHH
Confidence 3344444444444454 899999 689999888 55554 44 222211222222 7999999999999999
Q ss_pred HhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcC
Q 047406 81 AQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF 160 (290)
Q Consensus 81 a~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
+...+..+|+|+|+|+++++.|+.|+.. .++
T Consensus 129 a~~~~~~~V~a~Dis~~Al~~A~~Na~~------------------------------------------------~~l- 159 (280)
T COG2890 129 AKEGPDAEVIAVDISPDALALARENAER------------------------------------------------NGL- 159 (280)
T ss_pred HhhCcCCeEEEEECCHHHHHHHHHHHHH------------------------------------------------cCC-
Confidence 9998888999999999999999999887 444
Q ss_pred cceeEeecccccCCCCCCCceeEEEEchhh-------------h---hhhhcCCchH---HHHHHHHHHhhcCCCcEEEE
Q 047406 161 DIVSFKQENFVHGRDSPEKYYDAILCLSVT-------------K---WIHLNWGDDG---LITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl-------------~---~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i 221 (290)
.++.+.+.|+... ..++||+|+|+.-- . +..+..+.++ ..+++.++.+.|+|||.+++
T Consensus 160 ~~~~~~~~dlf~~---~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 160 VRVLVVQSDLFEP---LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred ccEEEEeeecccc---cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 3455666687663 23489999995210 0 0112223333 36899999999999999999
Q ss_pred eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcC-CeeeEeccC
Q 047406 222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIG-FRTVEDIGS 271 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G-f~~v~~~~~ 271 (290)
+.+ +...+....++.+.| |..++...+
T Consensus 237 e~g-----------------------~~q~~~v~~~~~~~~~~~~v~~~~d 264 (280)
T COG2890 237 EIG-----------------------LTQGEAVKALFEDTGFFEIVETLKD 264 (280)
T ss_pred EEC-----------------------CCcHHHHHHHHHhcCCceEEEEEec
Confidence 876 333444455888899 676666655
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=1.2e-13 Score=121.54 Aligned_cols=146 Identities=22% Similarity=0.186 Sum_probs=106.9
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
..++++.+|||+|||+|..+..+++..+..+|+++|+|+.+++.|++++..
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~----------------------------- 91 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE----------------------------- 91 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----------------------------
Confidence 344568999999999999999999888888999999999999999998776
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.++. ++.+...|..+. +. .++||+|+|... .....+++.++++|+|||
T Consensus 92 -------------------~~l~-~i~~~~~d~~~~-~~-~~~fDlV~~~~~----------~~~~~~l~~~~~~LkpGG 139 (187)
T PRK00107 92 -------------------LGLK-NVTVVHGRAEEF-GQ-EEKFDVVTSRAV----------ASLSDLVELCLPLLKPGG 139 (187)
T ss_pred -------------------cCCC-CEEEEeccHhhC-CC-CCCccEEEEccc----------cCHHHHHHHHHHhcCCCe
Confidence 3343 388999998763 33 578999999643 245788999999999999
Q ss_pred EEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCCCCCCCcceeeecC
Q 047406 218 IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFRK 290 (290)
Q Consensus 218 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~k 290 (290)
++++..+.+. ...+.+ +.+..|+.+.+.+.- ..+. -.-.|.+.+.||
T Consensus 140 ~lv~~~~~~~----------------------~~~l~~-~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~ 186 (187)
T PRK00107 140 RFLALKGRDP----------------------EEEIAE-LPKALGGKVEEVIEL-TLPG--LDGERHLVIIRK 186 (187)
T ss_pred EEEEEeCCCh----------------------HHHHHH-HHHhcCceEeeeEEE-ecCC--CCCcEEEEEEec
Confidence 9999765321 122333 566679987777654 1111 222345555554
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.56 E-value=8.4e-14 Score=127.86 Aligned_cols=154 Identities=18% Similarity=0.271 Sum_probs=106.3
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|||+|||+|..+..+++..+. .+|+++|+++.+++.|+++...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~------------------------------ 124 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK------------------------------ 124 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH------------------------------
Confidence 468899999999999988877776543 4799999999999999987654
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.++ .++.+...|+.+ ++.+++.||+|++..+++|. .+...++++++++|+|||.
T Consensus 125 ------------------~g~-~~v~~~~~d~~~-l~~~~~~fD~Vi~~~v~~~~------~d~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 125 ------------------AGY-TNVEFRLGEIEA-LPVADNSVDVIISNCVINLS------PDKERVFKEAFRVLKPGGR 178 (272)
T ss_pred ------------------cCC-CCEEEEEcchhh-CCCCCCceeEEEEcCcccCC------CCHHHHHHHHHHHcCCCcE
Confidence 222 257788888765 45566799999999888644 3567899999999999999
Q ss_pred EEEeeCCCchhhhhhhhhhh--hhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 219 FVLEPQPWVSYEKNRRVSET--TATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 219 l~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+++.......... ...... +......-.+...++.+ +++.+||..+++...
T Consensus 179 l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 179 FAISDVVLRGELP-EEIRNDAELYAGCVAGALQEEEYLA-MLAEAGFVDITIQPK 231 (272)
T ss_pred EEEEEeeccCCCC-HHHHHhHHHHhccccCCCCHHHHHH-HHHHCCCCceEEEec
Confidence 9996432211000 000000 00011111234556665 789999998877543
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.56 E-value=6e-14 Score=132.54 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=99.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.++..++... ...|+|+|+|+.++..++..-..
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~-------------------------------- 166 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKL-------------------------------- 166 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHH--------------------------------
Confidence 568999999999999988887764 34799999999998765432111
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
......+.+...++.+ ++. ...||+|+|..+++|. .+...++.+++++|+|||.|+
T Consensus 167 ----------------~~~~~~v~~~~~~ie~-lp~-~~~FD~V~s~gvL~H~------~dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 167 ----------------LDNDKRAILEPLGIEQ-LHE-LYAFDTVFSMGVLYHR------KSPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred ----------------hccCCCeEEEECCHHH-CCC-CCCcCEEEEcchhhcc------CCHHHHHHHHHHhcCCCCEEE
Confidence 0001235566666544 333 3579999999999765 466889999999999999999
Q ss_pred EeeCCCchhhhhhhhhhhhhccccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406 221 LEPQPWVSYEKNRRVSETTATNFQNIK-LYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++....................+.++. +.+......+++++||+.+++...
T Consensus 223 letl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 223 LETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred EEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 964322111110000000111112222 223333444899999999988765
No 31
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.56 E-value=1.4e-13 Score=131.25 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=103.7
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.++..+++..+..+++++|+|+.+++.|+++...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-------------------------------- 159 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------------------- 159 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------------------------------
Confidence 357899999999999999988877767999999999999998875321
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++.+...|..+ .+.+++.||+|++..+++++ .+...+++++.++|+|||.++
T Consensus 160 --------------------~~i~~i~gD~e~-lp~~~~sFDvVIs~~~L~~~------~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 160 --------------------KECKIIEGDAED-LPFPTDYADRYVSAGSIEYW------PDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred --------------------cCCeEEeccHHh-CCCCCCceeEEEEcChhhhC------CCHHHHHHHHHHhcCCCcEEE
Confidence 136678888765 45566889999999988654 345689999999999999998
Q ss_pred EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+...........+. ....+.. ....+++.+ +++++||+.+++...
T Consensus 213 Ii~~~~p~~~~~r~----~~~~~~~-~~t~eEl~~-lL~~aGF~~V~i~~i 257 (340)
T PLN02490 213 LIGPVHPTFWLSRF----FADVWML-FPKEEEYIE-WFTKAGFKDVKLKRI 257 (340)
T ss_pred EEEecCcchhHHHH----hhhhhcc-CCCHHHHHH-HHHHCCCeEEEEEEc
Confidence 85432111111000 0011111 123455555 899999999887654
No 32
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.56 E-value=7.5e-15 Score=135.40 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=90.6
Q ss_pred CCCcEEEecCCCCh----hhHHHHhHcC-----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406 62 EGKDCLDIGCNSGI----ITIQIAQKFN-----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD 132 (290)
Q Consensus 62 ~~~~vLDiGcG~G~----~~~~la~~~~-----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
++.+|||+|||+|. +++.+++.++ ..+|+|+|+|+.+++.|++.++..-.....+...- .-+|.. ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~---~~yf~~-~~ 174 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL---ARYFSR-VE 174 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH---hhhEEe-CC
Confidence 45799999999996 4555555544 35899999999999999987543110000000000 001111 11
Q ss_pred CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL 212 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~ 212 (290)
+..+. ...+...+.|.+.|+.+. +.+.++||+|+|.++++|+ +.+...+++.++.++
T Consensus 175 ~~~~v------------------~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf----~~~~~~~~l~~l~~~ 231 (264)
T smart00138 175 DKYRV------------------KPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYF----DEPTQRKLLNRFAEA 231 (264)
T ss_pred CeEEE------------------ChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhC----CHHHHHHHHHHHHHH
Confidence 11110 122445799999999873 4456899999999999765 346778999999999
Q ss_pred cCCCcEEEEeeC
Q 047406 213 LRPGGIFVLEPQ 224 (290)
Q Consensus 213 LkpgG~l~i~~~ 224 (290)
|+|||+|++.+.
T Consensus 232 L~pGG~L~lg~~ 243 (264)
T smart00138 232 LKPGGYLFLGHS 243 (264)
T ss_pred hCCCeEEEEECc
Confidence 999999999643
No 33
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.56 E-value=2.6e-13 Score=126.42 Aligned_cols=158 Identities=22% Similarity=0.238 Sum_probs=110.3
Q ss_pred hhhHHHHHhhh-cC-CCccccccccccccccccCCCCCc---hh------hHHhhh-hc--cCCCcEEEecCCCChhhHH
Q 047406 14 EKGEAQQLKKR-KG-KDVFPFGNYKNYYGYRIGQGLNED---PR------FKVLKK-EW--FEGKDCLDIGCNSGIITIQ 79 (290)
Q Consensus 14 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~------l~~l~~-~~--~~~~~vLDiGcG~G~~~~~ 79 (290)
++-.....|+. ++ ..+|+.| +.+|++..| .+... || +..... .+ .++.+|||+|||+|.+++.
T Consensus 62 ~~~~~~~~rr~~~~~Pl~yi~g-~~~f~g~~f--~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~ 138 (284)
T TIGR03533 62 ERILELIERRIEERIPVAYLTN-EAWFAGLEF--YVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIA 138 (284)
T ss_pred HHHHHHHHHHHhCCCcHHHHcC-CCeecCcEE--EECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHH
Confidence 34444455554 45 5999999 789988666 22222 22 222222 12 2357899999999999999
Q ss_pred HHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCc
Q 047406 80 IAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNL 159 (290)
Q Consensus 80 la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (290)
++...+..+|+|+|+|+.+++.|+.++.. .++
T Consensus 139 la~~~~~~~v~avDis~~al~~A~~n~~~------------------------------------------------~~~ 170 (284)
T TIGR03533 139 CAYAFPEAEVDAVDISPDALAVAEINIER------------------------------------------------HGL 170 (284)
T ss_pred HHHHCCCCEEEEEECCHHHHHHHHHHHHH------------------------------------------------cCC
Confidence 99988878999999999999999998875 344
Q ss_pred CcceeEeecccccCCCCCCCceeEEEEchh---------h----h---hhhhcCCchH---HHHHHHHHHhhcCCCcEEE
Q 047406 160 FDIVSFKQENFVHGRDSPEKYYDAILCLSV---------T----K---WIHLNWGDDG---LITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 160 ~~~i~~~~~d~~~~~~~~~~~fD~I~~~~v---------l----~---~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~ 220 (290)
..++.+...|+.+.. +..+||+|+|+.- + + ...+..+.++ ...++.++.++|+|||.++
T Consensus 171 ~~~i~~~~~D~~~~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~ 248 (284)
T TIGR03533 171 EDRVTLIQSDLFAAL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLV 248 (284)
T ss_pred CCcEEEEECchhhcc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEE
Confidence 456889999986533 3457999999621 0 0 0112222222 3688999999999999999
Q ss_pred EeeC
Q 047406 221 LEPQ 224 (290)
Q Consensus 221 i~~~ 224 (290)
++.+
T Consensus 249 ~e~g 252 (284)
T TIGR03533 249 VEVG 252 (284)
T ss_pred EEEC
Confidence 9875
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.55 E-value=9.7e-14 Score=125.89 Aligned_cols=100 Identities=16% Similarity=0.314 Sum_probs=81.9
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|.++..++.. ..+++++|+|+.+++.|+.+..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---------------------------------- 85 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---------------------------------- 85 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC----------------------------------
Confidence 4679999999999999888764 4589999999999998876421
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.+.+...|+.+ ++.++++||+|+|+.+++|+ .++..++.++.++|+|||.+++
T Consensus 86 --------------------~~~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~------~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 86 --------------------ADHYLAGDIES-LPLATATFDLAWSNLAVQWC------GNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred --------------------CCCEEEcCccc-CcCCCCcEEEEEECchhhhc------CCHHHHHHHHHHHcCCCeEEEE
Confidence 13466777755 45667789999999999887 4678999999999999999999
Q ss_pred eeC
Q 047406 222 EPQ 224 (290)
Q Consensus 222 ~~~ 224 (290)
...
T Consensus 139 ~~~ 141 (251)
T PRK10258 139 TTL 141 (251)
T ss_pred EeC
Confidence 754
No 35
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=4.1e-13 Score=122.82 Aligned_cols=182 Identities=22% Similarity=0.263 Sum_probs=119.2
Q ss_pred hhHHHHHhhhcCC-CccccccccccccccccCCCCC-chh------hHHhhh--hccCCCcEEEecCCCChhhHHHHhHc
Q 047406 15 KGEAQQLKKRKGK-DVFPFGNYKNYYGYRIGQGLNE-DPR------FKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKF 84 (290)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~------l~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~ 84 (290)
+-.....+..++. .+|+.| ...||+..|...... .|+ .+.+.. ...++.+|||+|||+|.++..++...
T Consensus 52 ~~~~~~~~~~~~~p~~~i~g-~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~ 130 (275)
T PRK09328 52 RFRALVARRAAGEPLQYILG-EAEFWGLDFKVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKER 130 (275)
T ss_pred HHHHHHHHHHcCCCHHHHce-eceEcCcEEEECCCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC
Confidence 3344444444553 778888 678888666322110 122 222221 12466899999999999999999988
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCccee
Q 047406 85 NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVS 164 (290)
Q Consensus 85 ~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 164 (290)
+..+++++|+|+.+++.|+.++.. ....++.
T Consensus 131 ~~~~v~~iDis~~~l~~a~~n~~~-------------------------------------------------~~~~~i~ 161 (275)
T PRK09328 131 PDAEVTAVDISPEALAVARRNAKH-------------------------------------------------GLGARVE 161 (275)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHh-------------------------------------------------CCCCcEE
Confidence 778999999999999999997651 1123588
Q ss_pred EeecccccCCCCCCCceeEEEEchhhh-----------------hhhhcCCc---hHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 165 FKQENFVHGRDSPEKYYDAILCLSVTK-----------------WIHLNWGD---DGLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 165 ~~~~d~~~~~~~~~~~fD~I~~~~vl~-----------------~~~l~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
+...|+.+.. +.++||+|+|+.-.. +..+..+. +....++.++.++|+|||.++++.+
T Consensus 162 ~~~~d~~~~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 162 FLQGDWFEPL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred EEEccccCcC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 8888886532 247899999952110 01111112 2346888999999999999999764
Q ss_pred CCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 225 PWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.+. .+.+ ..++.+.||..++.+.+
T Consensus 240 ~~~----------------------~~~~-~~~l~~~gf~~v~~~~d 263 (275)
T PRK09328 240 YDQ----------------------GEAV-RALLAAAGFADVETRKD 263 (275)
T ss_pred chH----------------------HHHH-HHHHHhCCCceeEEecC
Confidence 211 1223 33778899997777654
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.54 E-value=9.3e-14 Score=122.75 Aligned_cols=149 Identities=21% Similarity=0.319 Sum_probs=104.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.++.+|||+|||+|.++..++..+ +..+++|+|+|+.+++.++.+...
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------------------------------- 66 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------------------------------- 66 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-------------------------------
Confidence 567899999999999999999887 456899999999999998875211
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
...++.+...|+.+ .+.+.+.||+|++..+++++ .+...++.++.++|+|||.+
T Consensus 67 -------------------~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~------~~~~~~l~~~~~~L~~gG~l 120 (241)
T PRK08317 67 -------------------LGPNVEFVRGDADG-LPFPDGSFDAVRSDRVLQHL------EDPARALAEIARVLRPGGRV 120 (241)
T ss_pred -------------------CCCceEEEeccccc-CCCCCCCceEEEEechhhcc------CCHHHHHHHHHHHhcCCcEE
Confidence 12357788888755 34556789999999998765 35788999999999999999
Q ss_pred EEeeCCCchhhhh-------hhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406 220 VLEPQPWVSYEKN-------RRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED 268 (290)
Q Consensus 220 ~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~ 268 (290)
++....|...... ............. ......+.. +++++||+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~l~~aGf~~~~~ 174 (241)
T PRK08317 121 VVLDTDWDTLVWHSGDRALMRKILNFWSDHFAD-PWLGRRLPG-LFREAGLTDIEV 174 (241)
T ss_pred EEEecCCCceeecCCChHHHHHHHHHHHhcCCC-CcHHHHHHH-HHHHcCCCceeE
Confidence 9977654321100 0111111111111 122344444 899999987655
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.54 E-value=2.9e-13 Score=118.23 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=83.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.+++.++...+..+|+++|+|+.+++.++.++..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-------------------------------- 88 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-------------------------------- 88 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--------------------------------
Confidence 358999999999999999998877777899999999999999887765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++. ++.+.+.|+.+ .. ..++||+|+|.. + ..+..++..+.++|+|||.++
T Consensus 89 ----------------~~~~-~i~~i~~d~~~-~~-~~~~fD~I~s~~-~---------~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 89 ----------------LGLN-NVEIVNGRAED-FQ-HEEQFDVITSRA-L---------ASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred ----------------hCCC-CeEEEecchhh-cc-ccCCccEEEehh-h---------hCHHHHHHHHHHhcCCCCEEE
Confidence 2332 48899999866 22 357899999865 3 234567888999999999999
Q ss_pred EeeC
Q 047406 221 LEPQ 224 (290)
Q Consensus 221 i~~~ 224 (290)
+..+
T Consensus 140 i~~~ 143 (181)
T TIGR00138 140 AYKG 143 (181)
T ss_pred EEcC
Confidence 9754
No 38
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=3.4e-13 Score=127.04 Aligned_cols=159 Identities=20% Similarity=0.267 Sum_probs=110.0
Q ss_pred hhhHHHHHhhh-cCC-Ccccccccccccccccc--CCCCCchh------hHHhhhhc-cC--CCcEEEecCCCChhhHHH
Q 047406 14 EKGEAQQLKKR-KGK-DVFPFGNYKNYYGYRIG--QGLNEDPR------FKVLKKEW-FE--GKDCLDIGCNSGIITIQI 80 (290)
Q Consensus 14 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~------l~~l~~~~-~~--~~~vLDiGcG~G~~~~~l 80 (290)
++-.....++. ++. .+|+.| +.+||+..|. ..+.. || +......+ .. ..+|||+|||+|.+++.+
T Consensus 74 ~~~~~~~~rr~~~~~Pl~yi~g-~~~F~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~l 151 (307)
T PRK11805 74 ARILELIERRINERIPAAYLTN-EAWFCGLEFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIAC 151 (307)
T ss_pred HHHHHHHHHHHHCCccHHHHcC-cceEcCcEEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHH
Confidence 34444455553 344 999999 7889886652 12211 22 22222212 22 268999999999999999
Q ss_pred HhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcC
Q 047406 81 AQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLF 160 (290)
Q Consensus 81 a~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
+..++..+|+++|+|+.+++.|+.++.. .++.
T Consensus 152 a~~~p~~~V~avDis~~al~~A~~n~~~------------------------------------------------~~l~ 183 (307)
T PRK11805 152 AYAFPDAEVDAVDISPDALAVAEINIER------------------------------------------------HGLE 183 (307)
T ss_pred HHHCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------------------------hCCC
Confidence 9988888999999999999999999876 3344
Q ss_pred cceeEeecccccCCCCCCCceeEEEEchh---------h----hh---hhhcCCchH---HHHHHHHHHhhcCCCcEEEE
Q 047406 161 DIVSFKQENFVHGRDSPEKYYDAILCLSV---------T----KW---IHLNWGDDG---LITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~v---------l----~~---~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i 221 (290)
.++.+...|+.+.. +.++||+|+|+.- + +| ..+..+.++ ...++.++.+.|+|||.+++
T Consensus 184 ~~i~~~~~D~~~~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 184 DRVTLIESDLFAAL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CcEEEEECchhhhC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 46889999986643 3457999999621 0 00 112223333 36889999999999999999
Q ss_pred eeC
Q 047406 222 EPQ 224 (290)
Q Consensus 222 ~~~ 224 (290)
+.+
T Consensus 262 E~g 264 (307)
T PRK11805 262 EVG 264 (307)
T ss_pred EEC
Confidence 876
No 39
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.53 E-value=4.8e-14 Score=128.66 Aligned_cols=153 Identities=19% Similarity=0.313 Sum_probs=106.8
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
|++|||+|||.|.++.-||+. +.+|+|+|+++++++.|+.+... .++.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~------------------------dP~~------ 137 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKM------------------------DPVL------ 137 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhc------------------------Cchh------
Confidence 588999999999999999987 56999999999999999998332 0010
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
...+.-++++.+.+... ..+.||.|+|+.+++|+ +++..++..++++|+|+|.+++.
T Consensus 138 -------------~~~~~y~l~~~~~~~E~----~~~~fDaVvcsevleHV------~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 138 -------------EGAIAYRLEYEDTDVEG----LTGKFDAVVCSEVLEHV------KDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred -------------ccccceeeehhhcchhh----cccccceeeeHHHHHHH------hCHHHHHHHHHHHhCCCCceEee
Confidence 01112235566666544 24569999999999766 68899999999999999999997
Q ss_pred eCC--Cchhhhhhhhhhhhhcc-----cccc-ccCchhHHHHHHHHcCCeeeEeccC
Q 047406 223 PQP--WVSYEKNRRVSETTATN-----FQNI-KLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 223 ~~~--~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.-+ +.++...-...+....- ++-- .+.|++... +++.+++++..+.+.
T Consensus 195 tinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~-~l~~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 195 TINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTS-ILNANGAQVNDVVGE 250 (282)
T ss_pred ehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHH-HHHhcCcchhhhhcc
Confidence 643 23333333333333321 1111 244555555 788899998877665
No 40
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.53 E-value=8.1e-14 Score=123.48 Aligned_cols=107 Identities=22% Similarity=0.390 Sum_probs=87.6
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+.+|||+|||+|.++..+++.++..+++++|+|+.+++.++....
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------------------------------- 79 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------------------------------- 79 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------------------------
Confidence 4578999999999999999998877789999999999988876321
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.++.+...|+.+ .+.++++||+|+|..+++|+ .+...++.++.++|+|||.+++
T Consensus 80 -------------------~~~~~~~~d~~~-~~~~~~~fD~vi~~~~l~~~------~~~~~~l~~~~~~L~~~G~l~~ 133 (240)
T TIGR02072 80 -------------------ENVQFICGDAEK-LPLEDSSFDLIVSNLALQWC------DDLSQALSELARVLKPGGLLAF 133 (240)
T ss_pred -------------------CCCeEEecchhh-CCCCCCceeEEEEhhhhhhc------cCHHHHHHHHHHHcCCCcEEEE
Confidence 146777788765 35566789999999999876 3578899999999999999999
Q ss_pred eeCCCch
Q 047406 222 EPQPWVS 228 (290)
Q Consensus 222 ~~~~~~~ 228 (290)
....+..
T Consensus 134 ~~~~~~~ 140 (240)
T TIGR02072 134 STFGPGT 140 (240)
T ss_pred EeCCccC
Confidence 7654433
No 41
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.53 E-value=3.2e-13 Score=126.36 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=107.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.+++.+++.+|..+++++|+ |.+++.+++++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~-------------------------------- 194 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE-------------------------------- 194 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh--------------------------------
Confidence 4668999999999999999999999889999998 7899999887765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++.+++++...|+.+. +.+ .+|+|++..++| .|+++....+++++++.|+|||.++
T Consensus 195 ----------------~gl~~rv~~~~~d~~~~-~~~--~~D~v~~~~~lh----~~~~~~~~~il~~~~~~L~pgG~l~ 251 (306)
T TIGR02716 195 ----------------KGVADRMRGIAVDIYKE-SYP--EADAVLFCRILY----SANEQLSTIMCKKAFDAMRSGGRLL 251 (306)
T ss_pred ----------------CCccceEEEEecCccCC-CCC--CCCEEEeEhhhh----cCChHHHHHHHHHHHHhcCCCCEEE
Confidence 34556799999998753 222 369999888875 3456667899999999999999999
Q ss_pred EeeCCCchhhhh--hhhhhhhhc---cccccccC-chhHHHHHHHHcCCeeeEec
Q 047406 221 LEPQPWVSYEKN--RRVSETTAT---NFQNIKLY-PKEFQEILLDKIGFRTVEDI 269 (290)
Q Consensus 221 i~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~-~~~~~~~ll~~~Gf~~v~~~ 269 (290)
+....+...... ..+...... ......+. .+++.+ +++++||+.++..
T Consensus 252 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-ll~~aGf~~v~~~ 305 (306)
T TIGR02716 252 ILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKE-ILESLGYKDVTMV 305 (306)
T ss_pred EEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHH-HHHHcCCCeeEec
Confidence 975433221100 001110000 00111122 355655 8999999988753
No 42
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=2.5e-13 Score=119.78 Aligned_cols=139 Identities=18% Similarity=0.276 Sum_probs=98.2
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++..+..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~-------------------------------- 74 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAA-------------------------------- 74 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 46789999999999999999986 45899999999999999987654
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++ ..+.+...|+.+. +. .+.||+|+|..+++|++ .+....+++++.++|+|||+++
T Consensus 75 ----------------~~~-~~v~~~~~d~~~~-~~-~~~fD~I~~~~~~~~~~----~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 75 ----------------ENL-DNLHTAVVDLNNL-TF-DGEYDFILSTVVLMFLE----AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ----------------cCC-CcceEEecChhhC-Cc-CCCcCEEEEecchhhCC----HHHHHHHHHHHHHHcCCCcEEE
Confidence 222 2366777777552 33 36799999999987653 4578899999999999999965
Q ss_pred Ee-eCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406 221 LE-PQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED 268 (290)
Q Consensus 221 i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~ 268 (290)
+. ...+.... ....+ ...+.++++.+ +++ ||++++.
T Consensus 132 ~~~~~~~~~~~--------~~~~~-~~~~~~~el~~-~~~--~~~~~~~ 168 (197)
T PRK11207 132 IVAAMDTADYP--------CTVGF-PFAFKEGELRR-YYE--GWEMVKY 168 (197)
T ss_pred EEEEecCCCCC--------CCCCC-CCccCHHHHHH-HhC--CCeEEEe
Confidence 53 22111100 00011 23355566655 454 8998776
No 43
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.8e-13 Score=127.94 Aligned_cols=137 Identities=28% Similarity=0.402 Sum_probs=100.9
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD 132 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
++.+.+...+|++|||+|||||++++..++ .++.+++|+|+||-+++.|+.|++.
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~------------------------ 207 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARL------------------------ 207 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHH------------------------
Confidence 667888888999999999999999998655 5677899999999999999999887
Q ss_pred CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL 212 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~ 212 (290)
+++...+.....+.... ...++||+|+++=.- +-+..+...+.++
T Consensus 208 ------------------------N~v~~~~~~~~~~~~~~--~~~~~~DvIVANILA---------~vl~~La~~~~~~ 252 (300)
T COG2264 208 ------------------------NGVELLVQAKGFLLLEV--PENGPFDVIVANILA---------EVLVELAPDIKRL 252 (300)
T ss_pred ------------------------cCCchhhhcccccchhh--cccCcccEEEehhhH---------HHHHHHHHHHHHH
Confidence 33322122222222221 123699999996432 4567899999999
Q ss_pred cCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 213 LRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 213 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++|||+++++.- --...+-....+.+.||.+++....
T Consensus 253 lkpgg~lIlSGI----------------------l~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 253 LKPGGRLILSGI----------------------LEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred cCCCceEEEEee----------------------hHhHHHHHHHHHHhCCCeEeEEEec
Confidence 999999999742 0111222333788899999999887
No 44
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=1.8e-13 Score=124.49 Aligned_cols=102 Identities=25% Similarity=0.455 Sum_probs=84.9
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|+.++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------------------------------- 75 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------------------------------- 75 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------------------------------
Confidence 4678999999999999999999887789999999999999987642
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++.+...|+.+. . +..+||+|+|..+++|+ .+...++.++.++|+|||.++
T Consensus 76 --------------------~~~~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~------~d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 76 --------------------PDCQFVEADIASW-Q-PPQALDLIFANASLQWL------PDHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred --------------------CCCeEEECchhcc-C-CCCCccEEEEccChhhC------CCHHHHHHHHHHhcCCCcEEE
Confidence 1366777777542 2 34689999999999887 356789999999999999999
Q ss_pred EeeC
Q 047406 221 LEPQ 224 (290)
Q Consensus 221 i~~~ 224 (290)
++.+
T Consensus 128 ~~~~ 131 (258)
T PRK01683 128 VQMP 131 (258)
T ss_pred EECC
Confidence 9643
No 45
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.52 E-value=4.8e-13 Score=118.84 Aligned_cols=107 Identities=22% Similarity=0.388 Sum_probs=86.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++.++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~------------------------------- 98 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD------------------------------- 98 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-------------------------------
Confidence 3578999999999999999998876 46999999999999999886543
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.++...+.+...|+.+ .+.+.+.||+|++..++++. .+...++.++.++|+|||.+
T Consensus 99 -----------------~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 99 -----------------LGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAFGLRNV------PDIDKALREMYRVLKPGGRL 154 (239)
T ss_pred -----------------cccccCeEEEeccccc-CCCCCCCccEEEEecccccC------CCHHHHHHHHHHhccCCcEE
Confidence 2233457888888866 34445789999999888654 35788999999999999999
Q ss_pred EEe
Q 047406 220 VLE 222 (290)
Q Consensus 220 ~i~ 222 (290)
++.
T Consensus 155 i~~ 157 (239)
T PRK00216 155 VIL 157 (239)
T ss_pred EEE
Confidence 874
No 46
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.51 E-value=4e-14 Score=130.88 Aligned_cols=135 Identities=19% Similarity=0.280 Sum_probs=99.3
Q ss_pred CCcEEEecCCCC----hhhHHHHhHcC-----CceEEEEeCCHHHHHHHHHHHHHH-HHhhhhhhhhhhhchhhhhhccC
Q 047406 63 GKDCLDIGCNSG----IITIQIAQKFN-----CRSILGIDIDSNRVADAYWHLRKI-VRTEHNEKRRANASRVEVIEKGD 132 (290)
Q Consensus 63 ~~~vLDiGcG~G----~~~~~la~~~~-----~~~i~g~Dis~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
..+||.+||++| ++++.+++.++ ..+|+|+|||..+|+.|+..++.. -.....+.+. ..-+|.+.+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~---~~ryF~~~~~ 173 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPEL---LRRYFERGGD 173 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHH---HhhhEeecCC
Confidence 579999999999 46666666664 359999999999999999987761 1111111111 1224444444
Q ss_pred CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL 212 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~ 212 (290)
|.++. ..++...|.|.+.|+++..+ ..+.||+|+|++|+. +++.+.+.+++.+++..
T Consensus 174 ~~y~v------------------~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLI----YFd~~~q~~il~~f~~~ 230 (268)
T COG1352 174 GSYRV------------------KEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLI----YFDEETQERILRRFADS 230 (268)
T ss_pred CcEEE------------------ChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEE----eeCHHHHHHHHHHHHHH
Confidence 44432 23456689999999998644 568899999999994 45678999999999999
Q ss_pred cCCCcEEEEee
Q 047406 213 LRPGGIFVLEP 223 (290)
Q Consensus 213 LkpgG~l~i~~ 223 (290)
|+|||+|++.+
T Consensus 231 L~~gG~LflG~ 241 (268)
T COG1352 231 LKPGGLLFLGH 241 (268)
T ss_pred hCCCCEEEEcc
Confidence 99999999964
No 47
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.50 E-value=2e-12 Score=116.26 Aligned_cols=136 Identities=25% Similarity=0.302 Sum_probs=98.7
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+.+|||+|||+|.++..++..++..+++|+|+|+.+++.|+.++..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~--------------------------------- 133 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR--------------------------------- 133 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 34699999999999999999988878999999999999999988765
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhh-----------------hhhcCCc---hH
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKW-----------------IHLNWGD---DG 201 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~-----------------~~l~~~~---~~ 201 (290)
.++. ++.+...|+.+. .+.++||+|+|+..... ..+..+. ..
T Consensus 134 ---------------~~~~-~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 195 (251)
T TIGR03534 134 ---------------LGLD-NVTFLQSDWFEP--LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDF 195 (251)
T ss_pred ---------------cCCC-eEEEEECchhcc--CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHH
Confidence 2222 488888888763 34578999999532110 0000111 12
Q ss_pred HHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 202 LITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 202 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
...++..+.++|+|||.++++.+ +...+....+++++||+.++++.+
T Consensus 196 ~~~~i~~~~~~L~~gG~~~~~~~-----------------------~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 196 YRRIIAQAPRLLKPGGWLLLEIG-----------------------YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred HHHHHHHHHHhcccCCEEEEEEC-----------------------ccHHHHHHHHHHhCCCCceEEEeC
Confidence 25788999999999999999753 111222334788999998888766
No 48
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.49 E-value=2.9e-13 Score=116.64 Aligned_cols=110 Identities=24% Similarity=0.371 Sum_probs=87.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|.+++.+++..+..+|+++|+++.+++.++.++..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~--------------------------------- 77 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER--------------------------------- 77 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH---------------------------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh---------------------------------
Confidence 67899999999999999999998877899999999999999999876
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
+++.. +.+...|+.+.. +.++||+|+|+.-++.-. .-+.+...+++.+..++|+|||.+++
T Consensus 78 ---------------n~~~~-v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 78 ---------------NGLEN-VEVVQSDLFEAL--PDGKFDLIVSNPPFHAGG-DDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ---------------TTCTT-EEEEESSTTTTC--CTTCEEEEEE---SBTTS-HCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---------------cCccc-cccccccccccc--cccceeEEEEccchhccc-ccchhhHHHHHHHHHHhccCCCEEEE
Confidence 44444 889999987743 368999999987653211 00123468999999999999999987
Q ss_pred ee
Q 047406 222 EP 223 (290)
Q Consensus 222 ~~ 223 (290)
..
T Consensus 139 v~ 140 (170)
T PF05175_consen 139 VI 140 (170)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 49
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.49 E-value=3.5e-13 Score=126.28 Aligned_cols=136 Identities=29% Similarity=0.433 Sum_probs=98.2
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD 132 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
++.+.....+|.+|||+|||||++++..++ .++.+|+|+|++|.+++.|+.|+..
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~------------------------ 206 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAEL------------------------ 206 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHH------------------------
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHH------------------------
Confidence 556777778899999999999999998555 5777999999999999999999887
Q ss_pred CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL 212 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~ 212 (290)
+++...+.+. .. .....++||+|+++-.. +-+..++..+.++
T Consensus 207 ------------------------N~~~~~~~v~--~~---~~~~~~~~dlvvANI~~---------~vL~~l~~~~~~~ 248 (295)
T PF06325_consen 207 ------------------------NGVEDRIEVS--LS---EDLVEGKFDLVVANILA---------DVLLELAPDIASL 248 (295)
T ss_dssp ------------------------TT-TTCEEES--CT---SCTCCS-EEEEEEES-H---------HHHHHHHHHCHHH
T ss_pred ------------------------cCCCeeEEEE--Ee---cccccccCCEEEECCCH---------HHHHHHHHHHHHh
Confidence 4555545442 11 12234899999986443 5567889999999
Q ss_pred cCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCC
Q 047406 213 LRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGL 274 (290)
Q Consensus 213 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~ 274 (290)
|+|||+|+++.- +.-..+.+.+ .+++ ||++++....+++
T Consensus 249 l~~~G~lIlSGI---------------------l~~~~~~v~~-a~~~-g~~~~~~~~~~~W 287 (295)
T PF06325_consen 249 LKPGGYLILSGI---------------------LEEQEDEVIE-AYKQ-GFELVEEREEGEW 287 (295)
T ss_dssp EEEEEEEEEEEE---------------------EGGGHHHHHH-HHHT-TEEEEEEEEETTE
T ss_pred hCCCCEEEEccc---------------------cHHHHHHHHH-HHHC-CCEEEEEEEECCE
Confidence 999999999742 0111233444 5666 9999988777443
No 50
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.48 E-value=1.5e-12 Score=115.99 Aligned_cols=151 Identities=20% Similarity=0.305 Sum_probs=102.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~-------------------------------- 99 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQG-------------------------------- 99 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence 46789999999999999998875 45899999999999999987654
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.....++.+...|+.+. + ++||+|++..+++++ ..+.+..++.++.+++++++++.
T Consensus 100 ----------------~~~~~~i~~~~~d~~~~---~-~~fD~ii~~~~l~~~----~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 100 ----------------RDVAGNVEFEVNDLLSL---C-GEFDIVVCMDVLIHY----PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred ----------------cCCCCceEEEECChhhC---C-CCcCEEEEhhHHHhC----CHHHHHHHHHHHHHHhCCCEEEE
Confidence 22223588899888652 2 789999999988544 23567889999999999877776
Q ss_pred EeeCCCchhhhhhhhhhhhhc--cccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 221 LEPQPWVSYEKNRRVSETTAT--NFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
+.+..+.. .....+...... ......+.+.+..+.+++.+||+++....
T Consensus 156 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 156 FAPKTAWL-AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred ECCCchHH-HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeec
Confidence 64332111 111111111111 11222333444444489999999887643
No 51
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.48 E-value=1.3e-14 Score=128.52 Aligned_cols=137 Identities=20% Similarity=0.300 Sum_probs=80.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHc----C-----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKF----N-----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD 132 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~----~-----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
+..+||.+||++|.-+..||... + ..+|+|+|+|+.+++.|++.++..-.....+ +....-+|.+...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~---~~~~~ryf~~~~~ 107 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLP---PAYLRRYFTERDG 107 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS----HHHHHHHEEEE-C
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhH---HHHHHHhccccCC
Confidence 34699999999995444444322 1 2489999999999999998765421111111 1111112211111
Q ss_pred CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL 212 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~ 212 (290)
+.++. ...+...+.|.+.|+.+ .+.+.+.||+|+|++|+.| ++.+...+++..+++.
T Consensus 108 ~~~~v------------------~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIY----F~~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 108 GGYRV------------------KPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIY----FDPETQQRVLRRLHRS 164 (196)
T ss_dssp CCTTE-------------------HHHHTTEEEEE--TT--S------EEEEEE-SSGGG----S-HHHHHHHHHHHGGG
T ss_pred CceeE------------------ChHHcCceEEEecccCC-CCcccCCccEEEecCEEEE----eCHHHHHHHHHHHHHH
Confidence 11111 23455689999999998 3456689999999999944 4578889999999999
Q ss_pred cCCCcEEEEeeC
Q 047406 213 LRPGGIFVLEPQ 224 (290)
Q Consensus 213 LkpgG~l~i~~~ 224 (290)
|+|||+|++.+.
T Consensus 165 L~pgG~L~lG~s 176 (196)
T PF01739_consen 165 LKPGGYLFLGHS 176 (196)
T ss_dssp EEEEEEEEE-TT
T ss_pred cCCCCEEEEecC
Confidence 999999999643
No 52
>PLN03075 nicotianamine synthase; Provisional
Probab=99.47 E-value=8.5e-13 Score=123.53 Aligned_cols=109 Identities=15% Similarity=0.191 Sum_probs=87.8
Q ss_pred CCCcEEEecCCCChhhH--HHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 62 EGKDCLDIGCNSGIITI--QIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~--~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
++++|+|||||.|.++. .++..++..+++++|+|+++++.|++.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------------------------------- 171 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------------------------------- 171 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------------------------------
Confidence 67999999999884433 334566777999999999999999998743
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
..++.+++.|...|..+. ....+.||+|+|. +++ +|++++..+++.++.+.|+|||++
T Consensus 172 ----------------~~gL~~rV~F~~~Da~~~-~~~l~~FDlVF~~-ALi----~~dk~~k~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 172 ----------------DPDLSKRMFFHTADVMDV-TESLKEYDVVFLA-ALV----GMDKEEKVKVIEHLGKHMAPGALL 229 (296)
T ss_pred ----------------ccCccCCcEEEECchhhc-ccccCCcCEEEEe-ccc----ccccccHHHHHHHHHHhcCCCcEE
Confidence 145667899999999873 2234789999999 663 445678899999999999999999
Q ss_pred EEee
Q 047406 220 VLEP 223 (290)
Q Consensus 220 ~i~~ 223 (290)
++..
T Consensus 230 vlr~ 233 (296)
T PLN03075 230 MLRS 233 (296)
T ss_pred EEec
Confidence 9964
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.47 E-value=1.6e-14 Score=112.59 Aligned_cols=99 Identities=23% Similarity=0.501 Sum_probs=63.4
Q ss_pred EEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHH
Q 047406 67 LDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKK 146 (290)
Q Consensus 67 LDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (290)
||+|||+|.++..+++.++..+++|+|+|+.+++.|++.+....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~------------------------------------ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG------------------------------------ 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------------------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC------------------------------------
Confidence 79999999999999999888899999999999988887766511
Q ss_pred hhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 147 AISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 147 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
......+.+...+... ..+.++||+|++.++++|+ +++..++.++.++|+|||+|
T Consensus 45 ----------~~~~~~~~~~~~~~~~--~~~~~~fD~V~~~~vl~~l------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 45 ----------NDNFERLRFDVLDLFD--YDPPESFDLVVASNVLHHL------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------------EEEEE--SSS-----CCC----SEEEEE-TTS--------S-HHHHHHHHTTT-TSS-EE
T ss_pred ----------CcceeEEEeecCChhh--cccccccceehhhhhHhhh------hhHHHHHHHHHHHcCCCCCC
Confidence 0111123344444322 1123699999999999887 57889999999999999986
No 54
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.46 E-value=2.1e-12 Score=114.73 Aligned_cols=182 Identities=21% Similarity=0.222 Sum_probs=130.6
Q ss_pred CchhhHHhhhhccCCCc-EEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhh
Q 047406 49 EDPRFKVLKKEWFEGKD-CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEV 127 (290)
Q Consensus 49 ~~~~l~~l~~~~~~~~~-vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (290)
.+|.++++.+.+....+ |||||||||.++..+|+.+|.....-+|+++..+.....++...
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~------------------ 72 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA------------------ 72 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc------------------
Confidence 44678888888777776 99999999999999999999988999999999987777766541
Q ss_pred hhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-CCC------CCCceeEEEEchhhhhhhhcCCch
Q 047406 128 IEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDS------PEKYYDAILCLSVTKWIHLNWGDD 200 (290)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~------~~~~fD~I~~~~vl~~~~l~~~~~ 200 (290)
++.+.......|.... ++. ...+||.|+|.+++|-. ...
T Consensus 73 ------------------------------~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~----p~~ 118 (204)
T PF06080_consen 73 ------------------------------GLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHIS----PWS 118 (204)
T ss_pred ------------------------------CCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhc----CHH
Confidence 1111122334444432 222 24689999999998733 235
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeeCCCch----hhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCC
Q 047406 201 GLITLFMRIWKLLRPGGIFVLEPQPWVS----YEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSS 276 (290)
Q Consensus 201 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~ 276 (290)
....+|..+.++|++||.|++-.+.... -..+..+...++..-+...+..-+....+..++|++.++++..
T Consensus 119 ~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~M----- 193 (204)
T PF06080_consen 119 AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDM----- 193 (204)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCccccc-----
Confidence 6789999999999999999995442211 1234555566665545556777677777999999999888876
Q ss_pred CCCCCCcceeeecC
Q 047406 277 SKTGFNRPIFLFRK 290 (290)
Q Consensus 277 ~~~~~~~~~~~~~k 290 (290)
--|-.+++|||
T Consensus 194 ---PANN~~Lvfrk 204 (204)
T PF06080_consen 194 ---PANNLLLVFRK 204 (204)
T ss_pred ---CCCCeEEEEeC
Confidence 12456777776
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.46 E-value=1.5e-12 Score=118.84 Aligned_cols=130 Identities=28% Similarity=0.405 Sum_probs=92.1
Q ss_pred HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406 54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG 133 (290)
Q Consensus 54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (290)
..+.....++.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.|+.++..
T Consensus 111 ~~l~~~~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~------------------------- 164 (250)
T PRK00517 111 EALEKLVLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAEL------------------------- 164 (250)
T ss_pred HHHHhhcCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH-------------------------
Confidence 34444456889999999999999887665 4455799999999999999998765
Q ss_pred cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406 134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL 213 (290)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L 213 (290)
+++...+.+... ..+||+|+|+... +....++.++.++|
T Consensus 165 -----------------------~~~~~~~~~~~~---------~~~fD~Vvani~~---------~~~~~l~~~~~~~L 203 (250)
T PRK00517 165 -----------------------NGVELNVYLPQG---------DLKADVIVANILA---------NPLLELAPDLARLL 203 (250)
T ss_pred -----------------------cCCCceEEEccC---------CCCcCEEEEcCcH---------HHHHHHHHHHHHhc
Confidence 222222332221 1279999986443 34568899999999
Q ss_pred CCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCC
Q 047406 214 RPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSG 272 (290)
Q Consensus 214 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~ 272 (290)
+|||+++++.... -..+.+.+ .+.+.||+++.....+
T Consensus 204 kpgG~lilsgi~~---------------------~~~~~v~~-~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 204 KPGGRLILSGILE---------------------EQADEVLE-AYEEAGFTLDEVLERG 240 (250)
T ss_pred CCCcEEEEEECcH---------------------hhHHHHHH-HHHHCCCEEEEEEEeC
Confidence 9999999974310 01123333 7889999998877763
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.45 E-value=1.9e-12 Score=112.65 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=93.2
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.+++.+++.++..+|+++|+|+.+++.|++++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-------------------------------- 77 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-------------------------------- 77 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence 577899999999999999999988777999999999999999988765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++ .++.+...|.... ..+.||+|++.... ..+..++..+.+.|+|||.++
T Consensus 78 ----------------~~~-~~i~~~~~d~~~~---~~~~~D~v~~~~~~---------~~~~~~l~~~~~~Lk~gG~lv 128 (187)
T PRK08287 78 ----------------FGC-GNIDIIPGEAPIE---LPGKADAIFIGGSG---------GNLTAIIDWSLAHLHPGGRLV 128 (187)
T ss_pred ----------------hCC-CCeEEEecCchhh---cCcCCCEEEECCCc---------cCHHHHHHHHHHhcCCCeEEE
Confidence 222 2477777776321 23579999986543 234678899999999999999
Q ss_pred EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406 221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED 268 (290)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~ 268 (290)
+..... -...+..+ ++++.||..+++
T Consensus 129 ~~~~~~---------------------~~~~~~~~-~l~~~g~~~~~~ 154 (187)
T PRK08287 129 LTFILL---------------------ENLHSALA-HLEKCGVSELDC 154 (187)
T ss_pred EEEecH---------------------hhHHHHHH-HHHHCCCCcceE
Confidence 853210 01123333 788999986664
No 57
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=2.4e-12 Score=119.99 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=82.3
Q ss_pred HhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406 55 VLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL 134 (290)
Q Consensus 55 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (290)
.+.....++.+|||+|||+|.+++.++. .+..+|+|+|+|+.+++.|+.++..
T Consensus 152 ~l~~~~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~-------------------------- 204 (288)
T TIGR00406 152 WLEDLDLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAEL-------------------------- 204 (288)
T ss_pred HHHhhcCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH--------------------------
Confidence 3444456889999999999999988766 4556899999999999999998765
Q ss_pred chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406 135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR 214 (290)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk 214 (290)
+++...+.+...+... ...++||+|+++... +.+..++.++.++|+
T Consensus 205 ----------------------n~~~~~~~~~~~~~~~---~~~~~fDlVvan~~~---------~~l~~ll~~~~~~Lk 250 (288)
T TIGR00406 205 ----------------------NQVSDRLQVKLIYLEQ---PIEGKADVIVANILA---------EVIKELYPQFSRLVK 250 (288)
T ss_pred ----------------------cCCCcceEEEeccccc---ccCCCceEEEEecCH---------HHHHHHHHHHHHHcC
Confidence 3333345555554322 235689999997654 345688999999999
Q ss_pred CCcEEEEee
Q 047406 215 PGGIFVLEP 223 (290)
Q Consensus 215 pgG~l~i~~ 223 (290)
|||+++++.
T Consensus 251 pgG~li~sg 259 (288)
T TIGR00406 251 PGGWLILSG 259 (288)
T ss_pred CCcEEEEEe
Confidence 999999964
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.45 E-value=1.7e-12 Score=103.76 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=82.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|..+..+++.++..+|+++|+|+.+++.++.++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 66 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF------------------------------- 66 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh-------------------------------
Confidence 4578999999999999999999887779999999999999999887651
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
++ .++.+...|.....+....+||+|++.... .....++..+.+.|+|||.++
T Consensus 67 -----------------~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~---------~~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 67 -----------------GV-SNIVIVEGDAPEALEDSLPEPDRVFIGGSG---------GLLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred -----------------CC-CceEEEeccccccChhhcCCCCEEEECCcc---------hhHHHHHHHHHHHcCCCCEEE
Confidence 11 236677776543222234689999986543 345689999999999999999
Q ss_pred Eee
Q 047406 221 LEP 223 (290)
Q Consensus 221 i~~ 223 (290)
+..
T Consensus 120 ~~~ 122 (124)
T TIGR02469 120 LNA 122 (124)
T ss_pred EEe
Confidence 863
No 59
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.45 E-value=2e-13 Score=107.17 Aligned_cols=97 Identities=28% Similarity=0.499 Sum_probs=76.0
Q ss_pred EEEecCCCChhhHHHHhHc---CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 66 CLDIGCNSGIITIQIAQKF---NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 66 vLDiGcG~G~~~~~la~~~---~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
|||+|||+|..+..++..+ +..+++|+|+|+.+++.+++....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---------------------------------- 46 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---------------------------------- 46 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH----------------------------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh----------------------------------
Confidence 7999999999999999886 236999999999999999987553
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc-hhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL-SVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~-~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.+. .+.+.+.|+.+ ++...++||+|+|. .+++|+ .++.+..+++++.++|+|||
T Consensus 47 --------------~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~~~~~~~----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 47 --------------DGP--KVRFVQADARD-LPFSDGKFDLVVCSGLSLHHL----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------------TTT--TSEEEESCTTC-HHHHSSSEEEEEE-TTGGGGS----SHHHHHHHHHHHHHTEEEEE
T ss_pred --------------cCC--ceEEEECCHhH-CcccCCCeeEEEEcCCccCCC----CHHHHHHHHHHHHHHhCCCC
Confidence 112 58889999976 55566799999995 447554 46788999999999999998
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.45 E-value=6.8e-13 Score=117.54 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=87.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|..+..+++.++..+|+|+|+|+++++.|..++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~--------------------------------- 86 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE--------------------------------- 86 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH---------------------------------
Confidence 57899999999999999999988777999999999999999987654
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCC--chHHHHHHHHHHhhcCCCc
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWG--DDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~--~~~~~~~l~~~~~~LkpgG 217 (290)
.++ .++.+.+.|+.+.++ .+.+.||+|++.....|...... ......+++++.++|+|||
T Consensus 87 ---------------~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG 150 (202)
T PRK00121 87 ---------------EGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGG 150 (202)
T ss_pred ---------------cCC-CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCC
Confidence 223 357888888733233 35678999999766554321100 0124788999999999999
Q ss_pred EEEEeeC
Q 047406 218 IFVLEPQ 224 (290)
Q Consensus 218 ~l~i~~~ 224 (290)
++++...
T Consensus 151 ~l~i~~~ 157 (202)
T PRK00121 151 EIHFATD 157 (202)
T ss_pred EEEEEcC
Confidence 9999643
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.44 E-value=1.3e-12 Score=121.96 Aligned_cols=154 Identities=22% Similarity=0.259 Sum_probs=103.7
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..|++|||||||+|.++..++.. ++..|+|+|.++..+.....--.-
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~-------------------------------- 160 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHF-------------------------------- 160 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHH--------------------------------
Confidence 57899999999999999998876 456899999988765554332111
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.+....+.+.. ...+.++. .+.||+|+|..|+.|. .+....|.++...|+|||.|+
T Consensus 161 ----------------lg~~~~~~~lp-lgvE~Lp~-~~~FDtVF~MGVLYHr------r~Pl~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 161 ----------------LGQDPPVFELP-LGVEDLPN-LGAFDTVFSMGVLYHR------RSPLDHLKQLKDSLRPGGELV 216 (315)
T ss_pred ----------------hCCCccEEEcC-cchhhccc-cCCcCEEEEeeehhcc------CCHHHHHHHHHHhhCCCCEEE
Confidence 00011122221 22233455 5789999999999443 678899999999999999999
Q ss_pred EeeCCCchhhhhhhhhhhhhccccccccCc-hhHHHHHHHHcCCeeeEeccC
Q 047406 221 LEPQPWVSYEKNRRVSETTATNFQNIKLYP-KEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+++....+.....-+....+....++.+.| ..-...+++++||+.++++..
T Consensus 217 LETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 217 LETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred EEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 976543332222222222333455666655 344455899999999999877
No 62
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.44 E-value=1e-12 Score=115.67 Aligned_cols=140 Identities=13% Similarity=0.162 Sum_probs=95.4
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.++.....
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~--------------------------------- 74 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAR--------------------------------- 74 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 5679999999999999999885 45899999999999999876543
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.++ .+.+...|+.. .+. .++||+|+|..++++++ .+....+++++.++|+|||++++
T Consensus 75 ---------------~~~--~v~~~~~d~~~-~~~-~~~fD~I~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 75 ---------------ENL--PLRTDAYDINA-AAL-NEDYDFIFSTVVFMFLQ----AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ---------------hCC--CceeEeccchh-ccc-cCCCCEEEEecccccCC----HHHHHHHHHHHHHHhCCCcEEEE
Confidence 222 14555556533 222 35799999999986553 35678999999999999999666
Q ss_pred eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
..... ... . ......+..+.+.+..+ ++. +|+++....
T Consensus 132 ~~~~~----~~~-~---~~~~~~~~~~~~~el~~-~f~--~~~~~~~~e 169 (195)
T TIGR00477 132 VAAMD----TAD-Y---PCHMPFSFTFKEDELRQ-YYA--DWELLKYNE 169 (195)
T ss_pred EEecc----cCC-C---CCCCCcCccCCHHHHHH-HhC--CCeEEEeec
Confidence 42110 000 0 00001123466667766 443 688887763
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.43 E-value=7.2e-12 Score=112.20 Aligned_cols=151 Identities=20% Similarity=0.330 Sum_probs=101.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.++..+++. ..+++++|+++.+++.++.++..
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~-------------------------------- 92 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALE-------------------------------- 92 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHH--------------------------------
Confidence 46789999999999999988875 35899999999999999887543
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.+. .+.+...++.+......+.||+|+|..++++. .+...++..+.+.|+|||.++
T Consensus 93 ----------------~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 93 ----------------SGL--KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV------PDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred ----------------cCC--ceEEEecCHHHhhhhcCCCccEEEEhhHhhcc------CCHHHHHHHHHHHcCCCcEEE
Confidence 111 35666666654221234789999999888644 356789999999999999999
Q ss_pred EeeCCCchhhhhh------hhhhhh-hccccccc-cCchhHHHHHHHHcCCeeeEecc
Q 047406 221 LEPQPWVSYEKNR------RVSETT-ATNFQNIK-LYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 221 i~~~~~~~~~~~~------~~~~~~-~~~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
+....-....... ...... ........ +.++++.. ++.++||++++..+
T Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 149 FSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAA-WLRQAGLEVQDITG 205 (233)
T ss_pred EEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHH-HHHHCCCeEeeeee
Confidence 9754211100000 000000 00011112 34455655 89999999998754
No 64
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.42 E-value=8.5e-12 Score=114.32 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=101.9
Q ss_pred HHHhhhcCC-Ccccccccccccccccc--CCCCCchh------hHHhhhhc---cCCCcEEEecCCCChhhHHHHhHcCC
Q 047406 19 QQLKKRKGK-DVFPFGNYKNYYGYRIG--QGLNEDPR------FKVLKKEW---FEGKDCLDIGCNSGIITIQIAQKFNC 86 (290)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~------l~~l~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~ 86 (290)
...++.++. .+|+.| +..|++..+. .++.. |+ ++.+.... ..+.+|||+|||+|.++..++...+.
T Consensus 33 ~~~rr~~~~Pl~yi~g-~~~f~g~~~~v~~~vf~-pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~ 110 (251)
T TIGR03704 33 MVDRRVAGLPLEHVLG-WAEFCGLRIAVDPGVFV-PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDG 110 (251)
T ss_pred HHHHHHcCCCHHHhcc-cCeEcCeEEEECCCCcC-CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCC
Confidence 333444444 999999 6888876552 22222 22 22222221 12458999999999999999988777
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEe
Q 047406 87 RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFK 166 (290)
Q Consensus 87 ~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 166 (290)
.+|+++|+|+.+++.|+.++.. .+ +.+.
T Consensus 111 ~~v~~vDis~~al~~A~~N~~~------------------------------------------------~~----~~~~ 138 (251)
T TIGR03704 111 IELHAADIDPAAVRCARRNLAD------------------------------------------------AG----GTVH 138 (251)
T ss_pred CEEEEEECCHHHHHHHHHHHHH------------------------------------------------cC----CEEE
Confidence 7999999999999999998764 11 3567
Q ss_pred ecccccCCCC-CCCceeEEEEchhh---------------h--hhhhcCCchH---HHHHHHHHHhhcCCCcEEEEeeC
Q 047406 167 QENFVHGRDS-PEKYYDAILCLSVT---------------K--WIHLNWGDDG---LITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 167 ~~d~~~~~~~-~~~~fD~I~~~~vl---------------~--~~~l~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
+.|+.+..+. ..+.||+|+++.-. + ...++.+.++ ++.++..+.++|+|||.++++..
T Consensus 139 ~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 139 EGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred EeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7776553221 13579999996321 0 1223333333 46889999999999999999865
No 65
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=4.3e-12 Score=111.57 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=84.5
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++.+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 6789999999999999999988764 589999999999998877532
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
....+.+...|+.+ .+.+.+.||+|++..++++. .+...++.++.+.|+|||+++
T Consensus 86 ------------------~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~------~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 86 ------------------LPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRNV------TDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred ------------------cCCCceEEecchhc-CCCCCCcEEEEEEeeeeCCc------ccHHHHHHHHHHHcCCCcEEE
Confidence 12347788888766 34455789999998888644 457889999999999999999
Q ss_pred Eee
Q 047406 221 LEP 223 (290)
Q Consensus 221 i~~ 223 (290)
+..
T Consensus 141 ~~~ 143 (223)
T TIGR01934 141 ILE 143 (223)
T ss_pred EEE
Confidence 843
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.42 E-value=5.5e-12 Score=109.03 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=96.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..++...+ +|+++|+|+.+++.++.++..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-------------------------------- 63 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKL-------------------------------- 63 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence 4668999999999999999888643 899999999999999998764
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhh----------hcC-----CchHHHHH
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIH----------LNW-----GDDGLITL 205 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~----------l~~-----~~~~~~~~ 205 (290)
.+. .+.+...|+.+. ..++||+|+++...+... ..+ +...+..+
T Consensus 64 ----------------~~~--~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (179)
T TIGR00537 64 ----------------NNV--GLDVVMTDLFKG---VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRF 122 (179)
T ss_pred ----------------cCC--ceEEEEcccccc---cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHH
Confidence 222 367778887553 235899999986542111 000 11225789
Q ss_pred HHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 206 FMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 206 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+.++.++|+|||.+++..... -...++.. ++++.||....+...
T Consensus 123 l~~~~~~Lk~gG~~~~~~~~~---------------------~~~~~~~~-~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 123 LDELPEILKEGGRVQLIQSSL---------------------NGEPDTFD-KLDERGFRYEIVAER 166 (179)
T ss_pred HHhHHHhhCCCCEEEEEEecc---------------------CChHHHHH-HHHhCCCeEEEEEEe
Confidence 999999999999999964310 01234444 788999987776655
No 67
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=3.8e-12 Score=118.43 Aligned_cols=138 Identities=16% Similarity=0.226 Sum_probs=97.7
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++.++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~--------------------------------- 164 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEK--------------------------------- 164 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 4569999999999999999885 45899999999999999887654
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.++ .+.+...|+... + ..++||+|+|..++++++ .+....++.++.++|+|||++++
T Consensus 165 ---------------~~l--~v~~~~~D~~~~-~-~~~~fD~I~~~~vl~~l~----~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 165 ---------------ENL--NIRTGLYDINSA-S-IQEEYDFILSTVVLMFLN----RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ---------------cCC--ceEEEEechhcc-c-ccCCccEEEEcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEE
Confidence 233 366667776542 2 257899999999987653 45788999999999999999766
Q ss_pred eeC-CCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406 222 EPQ-PWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI 269 (290)
Q Consensus 222 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~ 269 (290)
... ....+. ...-....+.+.++.+ ++ .+|++++..
T Consensus 222 v~~~~~~~~~---------~~~p~~~~~~~~el~~-~~--~~~~i~~~~ 258 (287)
T PRK12335 222 VCAMDTEDYP---------CPMPFSFTFKEGELKD-YY--QDWEIVKYN 258 (287)
T ss_pred EEecccccCC---------CCCCCCcccCHHHHHH-Hh--CCCEEEEEe
Confidence 422 100000 0001123466667766 34 459988774
No 68
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=7e-12 Score=110.36 Aligned_cols=107 Identities=17% Similarity=0.317 Sum_probs=83.1
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|||+|||+|.+++.++... +..+|+++|+++.+++.+++++..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~------------------------------ 87 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK------------------------------ 87 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence 4678999999999999999988765 346899999999999999998765
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.++..++.+...|..+..+...+.||.|++... ...+..++..+.++|+|||.
T Consensus 88 ------------------~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~---------~~~~~~~l~~~~~~LkpgG~ 140 (198)
T PRK00377 88 ------------------FGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG---------SEKLKEIISASWEIIKKGGR 140 (198)
T ss_pred ------------------hCCCCCeEEEEechhhhHhhcCCCCCEEEECCC---------cccHHHHHHHHHHHcCCCcE
Confidence 233345777777775533333468999997432 24567889999999999999
Q ss_pred EEEee
Q 047406 219 FVLEP 223 (290)
Q Consensus 219 l~i~~ 223 (290)
+++..
T Consensus 141 lv~~~ 145 (198)
T PRK00377 141 IVIDA 145 (198)
T ss_pred EEEEe
Confidence 99853
No 69
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=1.5e-11 Score=111.25 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=93.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..++...+...|+|+|+++.+++.+.+.+..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-------------------------------- 118 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-------------------------------- 118 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------------------------------
Confidence 588999999999999999999887645899999999999987765433
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
..++.+..+|..+.. ....+.||+|++.... .+....++.++.++|+|||.
T Consensus 119 -------------------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~--------p~~~~~~L~~~~r~LKpGG~ 171 (226)
T PRK04266 119 -------------------RKNIIPILADARKPERYAHVVEKVDVIYQDVAQ--------PNQAEIAIDNAEFFLKDGGY 171 (226)
T ss_pred -------------------cCCcEEEECCCCCcchhhhccccCCEEEECCCC--------hhHHHHHHHHHHHhcCCCcE
Confidence 124666777764310 1113569999964221 12234568999999999999
Q ss_pred EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+++.. +|.+.+... ...... ++.. ..++++||+.++....
T Consensus 172 lvI~v-~~~~~d~~~----------~~~~~~-~~~~-~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 172 LLLAI-KARSIDVTK----------DPKEIF-KEEI-RKLEEGGFEILEVVDL 211 (226)
T ss_pred EEEEE-ecccccCcC----------CHHHHH-HHHH-HHHHHcCCeEEEEEcC
Confidence 99962 232111100 000111 2233 4789999999988776
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.39 E-value=1.1e-11 Score=108.54 Aligned_cols=151 Identities=16% Similarity=0.235 Sum_probs=96.2
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD 132 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
++.+.+.+.++.+|||+|||+|.++..++... ...++|+|+|+.+++.++..
T Consensus 4 ~~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~--------------------------- 55 (194)
T TIGR02081 4 LESILNLIPPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR--------------------------- 55 (194)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc---------------------------
Confidence 45566666788999999999999998887654 44789999999998887531
Q ss_pred CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK 211 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~ 211 (290)
.+.+.+.|+.+.. +.++++||+|+|..+++|+ .+...+++++.+
T Consensus 56 -----------------------------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~------~d~~~~l~e~~r 100 (194)
T TIGR02081 56 -----------------------------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT------RNPEEILDEMLR 100 (194)
T ss_pred -----------------------------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC------cCHHHHHHHHHH
Confidence 2456666665433 2456789999999999876 356778888877
Q ss_pred hcCCCcEEEEeeCCCchhhhhhhh------h--hhhhc---ccccccc-CchhHHHHHHHHcCCeeeEecc
Q 047406 212 LLRPGGIFVLEPQPWVSYEKNRRV------S--ETTAT---NFQNIKL-YPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 212 ~LkpgG~l~i~~~~~~~~~~~~~~------~--~~~~~---~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
.++ .+++..+.+......... . ..... +-.+..+ ...++.+ +++++||++++...
T Consensus 101 ~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-ll~~~Gf~v~~~~~ 167 (194)
T TIGR02081 101 VGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFED-LCGELNLRILDRAA 167 (194)
T ss_pred hCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHH-HHHHCCCEEEEEEE
Confidence 654 445544433222111000 0 00000 1112233 3445554 99999999987543
No 71
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.38 E-value=3.5e-12 Score=113.43 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=81.7
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
..+.++.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+.++.
T Consensus 39 ~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------------------------ 88 (204)
T TIGR03587 39 NRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------------------------ 88 (204)
T ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------------------------
Confidence 34567889999999999999999887666799999999999999976421
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.+.+.+.|+.+ +.++++||+|+|..+++|+. .+.+..++.++.+++ ++
T Consensus 89 ------------------------~~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~----p~~~~~~l~el~r~~--~~ 136 (204)
T TIGR03587 89 ------------------------NINIIQGSLFD--PFKDNFFDLVLTKGVLIHIN----PDNLPTAYRELYRCS--NR 136 (204)
T ss_pred ------------------------CCcEEEeeccC--CCCCCCEEEEEECChhhhCC----HHHHHHHHHHHHhhc--Cc
Confidence 24566777655 45678999999999996542 467889999999997 45
Q ss_pred EEEEe
Q 047406 218 IFVLE 222 (290)
Q Consensus 218 ~l~i~ 222 (290)
++++.
T Consensus 137 ~v~i~ 141 (204)
T TIGR03587 137 YILIA 141 (204)
T ss_pred EEEEE
Confidence 66663
No 72
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.38 E-value=8.7e-13 Score=117.62 Aligned_cols=104 Identities=24% Similarity=0.413 Sum_probs=90.1
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
+..+|.|+|||+|..+..+++++|...|+|+|-|++|++.|...+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------------------------------- 74 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------------------------------- 74 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------------------------------
Confidence 457999999999999999999999999999999999999996632
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.++.|...|..+- .|+.+.|+++++.++||+ ++-..+|.++...|.|||.|.+
T Consensus 75 -------------------p~~~f~~aDl~~w--~p~~~~dllfaNAvlqWl------pdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 75 -------------------PDATFEEADLRTW--KPEQPTDLLFANAVLQWL------PDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred -------------------CCCceecccHhhc--CCCCccchhhhhhhhhhc------cccHHHHHHHHHhhCCCceEEE
Confidence 2488999998773 355789999999999999 3557899999999999999999
Q ss_pred eeCCCc
Q 047406 222 EPQPWV 227 (290)
Q Consensus 222 ~~~~~~ 227 (290)
+.+.+.
T Consensus 128 QmPdN~ 133 (257)
T COG4106 128 QMPDNL 133 (257)
T ss_pred ECCCcc
Confidence 877653
No 73
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.38 E-value=1.7e-12 Score=114.56 Aligned_cols=102 Identities=26% Similarity=0.473 Sum_probs=80.5
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
.++||+|||.|.++..||.+ +.+++++|+|+.+++.|+..+..
T Consensus 45 ~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~----------------------------------- 87 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG----------------------------------- 87 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred ceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence 68999999999999999998 67999999999999999986543
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
..++.+.+.++.+. .|.+.||+|+++.++.|+. +.+++..++.++...|+|||.|++.+
T Consensus 88 ----------------~~~V~~~~~dvp~~--~P~~~FDLIV~SEVlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 88 ----------------LPHVEWIQADVPEF--WPEGRFDLIVLSEVLYYLD---DAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -----------------SSEEEEES-TTT-----SS-EEEEEEES-GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------CCCeEEEECcCCCC--CCCCCeeEEEEehHhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 23689999998764 3678999999999997663 23678999999999999999999965
No 74
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.38 E-value=8.4e-12 Score=113.73 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=108.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCC------ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNC------RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL 134 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~------~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (290)
..++++||++||+|-++..+....+. .+|+.+|+||++|..+++....
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-------------------------- 152 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-------------------------- 152 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh--------------------------
Confidence 46799999999999999988877665 6899999999999999986543
Q ss_pred chhhhhHHHHHHhhhcCCCccccCcCc--ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhh
Q 047406 135 EKNVTAAQEEKKAISRNCSPAERNLFD--IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKL 212 (290)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~ 212 (290)
..+.. ...+..+|..+ +|+++.+||+..+.+.+..+ .+.++.+++.+|+
T Consensus 153 ----------------------~~l~~~~~~~w~~~dAE~-LpFdd~s~D~yTiafGIRN~------th~~k~l~EAYRV 203 (296)
T KOG1540|consen 153 ----------------------RPLKASSRVEWVEGDAED-LPFDDDSFDAYTIAFGIRNV------THIQKALREAYRV 203 (296)
T ss_pred ----------------------cCCCcCCceEEEeCCccc-CCCCCCcceeEEEecceecC------CCHHHHHHHHHHh
Confidence 22332 37899999876 78999999999998887644 3678999999999
Q ss_pred cCCCcEEEEeeCCCch------h------hhhhhhhhhhhc---cc-----cccccCchhHHHHHHHHcCCeeeE
Q 047406 213 LRPGGIFVLEPQPWVS------Y------EKNRRVSETTAT---NF-----QNIKLYPKEFQEILLDKIGFRTVE 267 (290)
Q Consensus 213 LkpgG~l~i~~~~~~~------~------~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~ll~~~Gf~~v~ 267 (290)
|||||++.+-.-+-+. + .-...+.+++.. .| ...++.+.+..+.+.+.+||..+.
T Consensus 204 LKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 204 LKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred cCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 9999999983211100 0 000011111111 11 122466666666689999999886
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.38 E-value=2e-11 Score=108.26 Aligned_cols=152 Identities=21% Similarity=0.347 Sum_probs=100.8
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+.+|||+|||+|.++..+++.. ..++++|+++.+++.++.++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~--------------------------------- 89 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKK--------------------------------- 89 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHH---------------------------------
Confidence 47899999999999999887753 3699999999999999886654
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.+. ..+.+...|+.+......++||+|++..+++++ .+...++.++.++|+|||.+++
T Consensus 90 ---------------~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 90 ---------------DPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV------PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred ---------------cCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHHhC------CCHHHHHHHHHHhcCCCcEEEE
Confidence 111 136677777655321224789999999988755 4667899999999999999998
Q ss_pred eeCCCchhhhhhhh--hhhhh-----cccccccc-CchhHHHHHHHHcCCeeeEeccC
Q 047406 222 EPQPWVSYEKNRRV--SETTA-----TNFQNIKL-YPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 222 ~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.............. .+... .......+ .+.++.+ +++++||++++..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~G~~i~~~~~~ 204 (224)
T TIGR01983 148 STINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTS-WLESAGLRVKDVKGL 204 (224)
T ss_pred EecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHH-HHHHcCCeeeeeeeE
Confidence 75432110000000 00000 00111122 3445555 889999999887644
No 76
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.37 E-value=1.3e-11 Score=108.60 Aligned_cols=152 Identities=18% Similarity=0.302 Sum_probs=110.4
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccC
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGD 132 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
++.|...+.+|.+|||+|||.|.+...+.... ..+.+|+|++++.+..+.++
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r--------------------------- 55 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR--------------------------- 55 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc---------------------------
Confidence 44566667899999999999999998887754 56899999999988877652
Q ss_pred CcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406 133 GLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK 211 (290)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~ 211 (290)
.+.+.++|+.+.+. .++++||.|+++.+++.+ ..+..+|.++.+
T Consensus 56 -----------------------------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~------~~P~~vL~EmlR 100 (193)
T PF07021_consen 56 -----------------------------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV------RRPDEVLEEMLR 100 (193)
T ss_pred -----------------------------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhH------hHHHHHHHHHHH
Confidence 46788888877654 688999999999999866 356778777765
Q ss_pred hcCCCcEEEEeeCCCchhhhhhh--------hhhhhhc---cccccccCc-hhHHHHHHHHcCCeeeEeccC
Q 047406 212 LLRPGGIFVLEPQPWVSYEKNRR--------VSETTAT---NFQNIKLYP-KEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 212 ~LkpgG~l~i~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~-~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+ |...+++.+++..+..... ++..+-. +-+++++-+ .+|.+ +.++.|+++++-..-
T Consensus 101 V---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~-lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 101 V---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED-LCRELGIRIEERVFL 168 (193)
T ss_pred h---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH-HHHHCCCEEEEEEEE
Confidence 5 6778888887654433221 1222222 224555544 56655 999999999976543
No 77
>PRK06922 hypothetical protein; Provisional
Probab=99.37 E-value=7.6e-12 Score=127.26 Aligned_cols=115 Identities=16% Similarity=0.317 Sum_probs=91.6
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
.+.++.+|||+|||+|..+..+++.++..+++|+|+|+.+++.|+++...
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~------------------------------ 464 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN------------------------------ 464 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh------------------------------
Confidence 34578999999999999999999888888999999999999999876432
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhh--c-----CCchHHHHHHHHH
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHL--N-----WGDDGLITLFMRI 209 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l--~-----~~~~~~~~~l~~~ 209 (290)
.+ .++.+.++|..+ ++ .++++||+|+++.++||+.- . ++.+.+..+++++
T Consensus 465 ------------------~g--~~ie~I~gDa~d-Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI 523 (677)
T PRK06922 465 ------------------EG--RSWNVIKGDAIN-LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSA 523 (677)
T ss_pred ------------------cC--CCeEEEEcchHh-CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHH
Confidence 11 246677778765 33 45678999999999986521 1 2346789999999
Q ss_pred HhhcCCCcEEEEeeC
Q 047406 210 WKLLRPGGIFVLEPQ 224 (290)
Q Consensus 210 ~~~LkpgG~l~i~~~ 224 (290)
+++|+|||.+++...
T Consensus 524 ~RVLKPGGrLII~D~ 538 (677)
T PRK06922 524 YEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHcCCCcEEEEEeC
Confidence 999999999999754
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.36 E-value=7.1e-12 Score=121.19 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=88.1
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
+.+|||+|||+|.+++.+++.+|..+|+++|+|+.+++.|+.++....
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~-------------------------------- 276 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-------------------------------- 276 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------------------------------
Confidence 369999999999999999999888899999999999999999876510
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
.+....+.+...|..... +..+||+|+|+...|+.+. ..++...+++..+.++|+|||.|+++
T Consensus 277 --------------~~~~~~v~~~~~D~l~~~--~~~~fDlIlsNPPfh~~~~-~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 277 --------------PEALDRCEFMINNALSGV--EPFRFNAVLCNPPFHQQHA-LTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred --------------cccCceEEEEEccccccC--CCCCEEEEEECcCcccCcc-CCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 001125788888876532 3468999999877764431 23345578999999999999999997
Q ss_pred e
Q 047406 223 P 223 (290)
Q Consensus 223 ~ 223 (290)
.
T Consensus 340 ~ 340 (378)
T PRK15001 340 A 340 (378)
T ss_pred E
Confidence 5
No 79
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.36 E-value=3.4e-12 Score=119.28 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=92.1
Q ss_pred CCcEEEecCCCChhhHHHHhH----cC----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc---
Q 047406 63 GKDCLDIGCNSGIITIQIAQK----FN----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG--- 131 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~----~~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 131 (290)
..+||.+||++|.-++.||.. .+ ..+|+|+|||+.+++.|+..++..-.....+.+.- .-+|.+.+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~---~ryF~~~~~~~ 192 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQL---QRYFMRGTGPH 192 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHH---HHHcccccCCC
Confidence 369999999999655544442 22 25799999999999999998765322211111111 11222211
Q ss_pred CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh
Q 047406 132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK 211 (290)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~ 211 (290)
.+.++. ...+...+.|.+.|+.+....+.+.||+|+|.+++.|+ +.+...+++.++.+
T Consensus 193 ~~~~~v------------------~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF----~~~~~~~vl~~l~~ 250 (287)
T PRK10611 193 EGLVRV------------------RQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF----DKTTQERILRRFVP 250 (287)
T ss_pred CceEEE------------------ChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC----CHHHHHHHHHHHHH
Confidence 111111 13455679999999987322235789999999999443 56788999999999
Q ss_pred hcCCCcEEEEeeC
Q 047406 212 LLRPGGIFVLEPQ 224 (290)
Q Consensus 212 ~LkpgG~l~i~~~ 224 (290)
.|+|||+|++.+.
T Consensus 251 ~L~pgG~L~lG~s 263 (287)
T PRK10611 251 LLKPDGLLFAGHS 263 (287)
T ss_pred HhCCCcEEEEeCc
Confidence 9999999999653
No 80
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.36 E-value=1.5e-11 Score=109.35 Aligned_cols=150 Identities=20% Similarity=0.304 Sum_probs=97.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+.+...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~-------------------------------- 107 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPE-------------------------------- 107 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHh--------------------------------
Confidence 467899999999999999988763 4799999999999999987654
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++...+.+...|+. ...+.||+|+|..+++++ ..+....++..+.+.+++++++.
T Consensus 108 ----------------~~~~~~i~~~~~d~~----~~~~~fD~v~~~~~l~~~----~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 108 ----------------AGLAGNITFEVGDLE----SLLGRFDTVVCLDVLIHY----PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ----------------cCCccCcEEEEcCch----hccCCcCEEEEcchhhcC----CHHHHHHHHHHHHhhcCCeEEEE
Confidence 222245788888842 235789999999998543 34677889999988776555444
Q ss_pred EeeCCCchhhh-hhhhhhhhhc--cccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406 221 LEPQPWVSYEK-NRRVSETTAT--NFQNIK-LYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 221 i~~~~~~~~~~-~~~~~~~~~~--~~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+. +...... ...+...+.. ...... +...++.. ++.++||++++....
T Consensus 164 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 164 FA--PYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRR-ALAAAGFKVVRTERI 215 (230)
T ss_pred EC--CccHHHHHHHHhccccCCccCCCCccccCHHHHHH-HHHHCCCceEeeeec
Confidence 32 1111111 0111111100 111122 33344555 889999998887543
No 81
>PLN02672 methionine S-methyltransferase
Probab=99.35 E-value=1.7e-11 Score=131.12 Aligned_cols=130 Identities=24% Similarity=0.353 Sum_probs=90.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|.+++.+++.++..+|+|+|+|+.+++.|+.|+........ | ..
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~----------------~--~~------ 173 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDD----------------G--LP------ 173 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccc----------------c--cc------
Confidence 35689999999999999999998877999999999999999999875210000 0 00
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch--------------hhh------------hhhh
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS--------------VTK------------WIHL 195 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~--------------vl~------------~~~l 195 (290)
..+.....+.+++.|.+.|+.+........||+|+|+. +.+ ++.+
T Consensus 174 ---------~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL 244 (1082)
T PLN02672 174 ---------VYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCAL 244 (1082)
T ss_pred ---------ccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccc
Confidence 00000012334689999998774322123699999951 111 2344
Q ss_pred cC---CchHH---HHHHHHHHhhcCCCcEEEEeeC
Q 047406 196 NW---GDDGL---ITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 196 ~~---~~~~~---~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.. +.+++ ++++.+..++|+|||.++++.+
T Consensus 245 ~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 245 QGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 33 25555 6889999999999999999987
No 82
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=1.3e-11 Score=121.89 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=85.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~------------------------------------ 78 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESI------------------------------------ 78 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHH------------------------------------
Confidence 56799999999999999999873 4899999999999876541
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeeccccc-CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVH-GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.+...++.+.+.|+.+ ..+.+.++||+|+|..+++|+. ++.+..++.++.++|+|||+++
T Consensus 79 ---------------~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~----~~~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 79 ---------------NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLS----DKEVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred ---------------hccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCC----HHHHHHHHHHHHHhcCCCeEEE
Confidence 1112357888888864 2455678999999999997663 4567899999999999999999
Q ss_pred EeeC
Q 047406 221 LEPQ 224 (290)
Q Consensus 221 i~~~ 224 (290)
+...
T Consensus 140 ~~d~ 143 (475)
T PLN02336 140 FRES 143 (475)
T ss_pred EEec
Confidence 9654
No 83
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.35 E-value=3.1e-11 Score=105.69 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=107.3
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.++.++||||||+|++++.++...|..+|+++|-++++++..+.|...+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f------------------------------ 81 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF------------------------------ 81 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh------------------------------
Confidence 36889999999999999999998778889999999999999999998873
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
+ .+++.+..++.-+.++... .||.|+.... ..+..+++.++..|+|||.+
T Consensus 82 ------------------g-~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg----------~~i~~ile~~~~~l~~ggrl 131 (187)
T COG2242 82 ------------------G-VDNLEVVEGDAPEALPDLP-SPDAIFIGGG----------GNIEEILEAAWERLKPGGRL 131 (187)
T ss_pred ------------------C-CCcEEEEeccchHhhcCCC-CCCEEEECCC----------CCHHHHHHHHHHHcCcCCeE
Confidence 2 3568888888766544332 7999996332 57789999999999999999
Q ss_pred EEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCC-eeeEeccC-CCCCCCCCCCC--cceeee
Q 047406 220 VLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGF-RTVEDIGS-GGLSSSKTGFN--RPIFLF 288 (290)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf-~~v~~~~~-~~~~~~~~~~~--~~~~~~ 288 (290)
+...-. +-...-.-..+++.|| +++++..+ +....+.+.|. .|+++.
T Consensus 132 V~nait----------------------lE~~~~a~~~~~~~g~~ei~~v~is~~~~lg~~~~~~~~nPv~i~ 182 (187)
T COG2242 132 VANAIT----------------------LETLAKALEALEQLGGREIVQVQISRGKPLGGGTMFRPVNPVFII 182 (187)
T ss_pred EEEeec----------------------HHHHHHHHHHHHHcCCceEEEEEeecceeccCeeEeecCCCEEEE
Confidence 995321 1111112226889999 77766544 22233344443 465543
No 84
>PRK05785 hypothetical protein; Provisional
Probab=99.34 E-value=9.6e-12 Score=112.18 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=75.7
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..+++.+ ..+|+|+|+|+++++.|+..
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~----------------------------------- 93 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA----------------------------------- 93 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------------------------------
Confidence 457899999999999999998876 45899999999999998652
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
..+.+.|+.+ +|.++++||+|+|..+++|+ ++....++++.++|+|.+
T Consensus 94 ----------------------~~~~~~d~~~-lp~~d~sfD~v~~~~~l~~~------~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 94 ----------------------DDKVVGSFEA-LPFRDKSFDVVMSSFALHAS------DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ----------------------cceEEechhh-CCCCCCCEEEEEecChhhcc------CCHHHHHHHHHHHhcCce
Confidence 1234566655 57778999999999999765 467899999999999953
No 85
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=112.62 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=91.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
....+|||+|||+|.+++++|++.+..+|+++|+++.+.+.|++++..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-------------------------------- 90 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-------------------------------- 90 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh--------------------------------
Confidence 346899999999999999999998888999999999999999999876
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhh----------------hhhhcCCchHHH
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTK----------------WIHLNWGDDGLI 203 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~----------------~~~l~~~~~~~~ 203 (290)
+.+.+++++.+.|+.+.... ...+||+|+|+.-.. |. ..-+++
T Consensus 91 ----------------n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e----~~~~le 150 (248)
T COG4123 91 ----------------NPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE----ITLDLE 150 (248)
T ss_pred ----------------CcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhh----hcCCHH
Confidence 56777899999999874333 234699999963221 11 122467
Q ss_pred HHHHHHHhhcCCCcEEEEeeC
Q 047406 204 TLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 204 ~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.+++...++|+|||.+++.++
T Consensus 151 ~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 151 DLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred HHHHHHHHHccCCCEEEEEec
Confidence 999999999999999999866
No 86
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=2e-11 Score=118.28 Aligned_cols=102 Identities=24% Similarity=0.421 Sum_probs=83.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------------------------------- 212 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------------------------------- 212 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc--------------------------------
Confidence 5789999999999999999988764 4899999999999999885422
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
+ .+.+...|+.+. .++||.|++..+++|+ +......+++++.++|+|||+++
T Consensus 213 ------------------l--~v~~~~~D~~~l----~~~fD~Ivs~~~~ehv----g~~~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 213 ------------------L--PVEIRLQDYRDL----NGQFDRIVSVGMFEHV----GPKNYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred ------------------C--eEEEEECchhhc----CCCCCEEEEeCchhhC----ChHHHHHHHHHHHHHcCCCcEEE
Confidence 1 256677776542 4689999999988765 24567899999999999999999
Q ss_pred Eee
Q 047406 221 LEP 223 (290)
Q Consensus 221 i~~ 223 (290)
+..
T Consensus 265 l~~ 267 (383)
T PRK11705 265 LHT 267 (383)
T ss_pred EEE
Confidence 964
No 87
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.32 E-value=7.2e-12 Score=99.91 Aligned_cols=112 Identities=23% Similarity=0.268 Sum_probs=84.4
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
|.+|||+|||+|.++..+++.. ..+++|+|+++.+++.++.++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~---------------------------------- 45 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR---------------------------------- 45 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH----------------------------------
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH----------------------------------
Confidence 5689999999999999998886 67999999999999999998766
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCC-CCCCCceeEEEEchhhhhhhhc--CCchHHHHHHHHHHhhcCCCcEE
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLN--WGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~--~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.++...+.+...|+.+.. ..+..+||+|+++.-.....-+ ...+....+++++.++|+|||.+
T Consensus 46 --------------~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~ 111 (117)
T PF13659_consen 46 --------------NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVL 111 (117)
T ss_dssp --------------CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEE
T ss_pred --------------ccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEE
Confidence 344456899999987742 3456899999997554211000 01124578899999999999999
Q ss_pred EEee
Q 047406 220 VLEP 223 (290)
Q Consensus 220 ~i~~ 223 (290)
++..
T Consensus 112 ~~~~ 115 (117)
T PF13659_consen 112 VFIT 115 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9854
No 88
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=4e-11 Score=113.46 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=93.4
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+.+....+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~------------------------------ 191 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALA------------------------------ 191 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhccc------------------------------
Confidence 5789999999999999999885 45899999999999999987654100
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.......+.|...|+.+ ..+.||+|+|..+++|+ .++....++..+.+ +.++|+++.
T Consensus 192 --------------~~~~~~~~~f~~~Dl~~----l~~~fD~Vv~~~vL~H~----p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 192 --------------ALPPEVLPKFEANDLES----LSGKYDTVTCLDVLIHY----PQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred --------------ccccccceEEEEcchhh----cCCCcCEEEEcCEEEec----CHHHHHHHHHHHHh-hcCCEEEEE
Confidence 00011246777777643 24789999999998543 23455667777765 455555443
Q ss_pred eeCCCchhhhhhhhhhhhhcc--cccccc-CchhHHHHHHHHcCCeeeEecc
Q 047406 222 EPQPWVSYEKNRRVSETTATN--FQNIKL-YPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
..+....+.......+.+... .....+ .++++.+ +++++||+++....
T Consensus 249 ~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~-lL~~AGf~v~~~~~ 299 (315)
T PLN02585 249 FAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVER-ALKKAGWKVARREM 299 (315)
T ss_pred eCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHH-HHHHCCCEEEEEEE
Confidence 222211111111111111110 011123 3455554 89999999876543
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=3e-11 Score=107.19 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=81.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++++..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~------------------------------- 119 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER------------------------------- 119 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence 4778999999999999999888764 35899999999999999988765
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.++..++.+...|+.+..+ ...+||+|++...+.++ .+.+.+.|+|||+|
T Consensus 120 -----------------~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~~~------------~~~l~~~L~~gG~l 169 (205)
T PRK13944 120 -----------------LGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAAASTI------------PSALVRQLKDGGVL 169 (205)
T ss_pred -----------------cCCCCcEEEEECCcccCCc-cCCCccEEEEccCcchh------------hHHHHHhcCcCcEE
Confidence 2333457888889876433 34689999998776432 24678999999999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
++...
T Consensus 170 vi~~~ 174 (205)
T PRK13944 170 VIPVE 174 (205)
T ss_pred EEEEc
Confidence 98543
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=99.31 E-value=8.2e-11 Score=101.05 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=94.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~-------------------------------- 67 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKL-------------------------------- 67 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence 47789999999999999999887 46999999999999999887754
Q ss_pred HHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCCCCCceeEEEEchhhhh----------hhhc--C---CchHHHH
Q 047406 141 AQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDSPEKYYDAILCLSVTKW----------IHLN--W---GDDGLIT 204 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~----------~~l~--~---~~~~~~~ 204 (290)
.++.. .+.+...|+.+. .+...||+|+++..... .+.. . +...+..
T Consensus 68 ----------------~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (188)
T PRK14968 68 ----------------NNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDR 129 (188)
T ss_pred ----------------cCCCCcceEEEecccccc--ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHH
Confidence 12211 266777887663 23458999998643210 0000 0 1233577
Q ss_pred HHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 205 LFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 205 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
+++++.++|+|||.+++..... ...+... .++.++||+++....
T Consensus 130 ~i~~~~~~Lk~gG~~~~~~~~~---------------------~~~~~l~-~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLLQSSL---------------------TGEDEVL-EYLEKLGFEAEVVAE 173 (188)
T ss_pred HHHHHHHhcCCCeEEEEEEccc---------------------CCHHHHH-HHHHHCCCeeeeeee
Confidence 8999999999999998864311 0112333 378899998775543
No 91
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.31 E-value=4.5e-11 Score=104.85 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=78.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..++...+..+|+++|+|+.+++.++.++..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-------------------------------- 86 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-------------------------------- 86 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 467899999999999999998776667999999999999999998765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++ .++.+...|..+.++.....+|.++... ......++.++.++|+|||.++
T Consensus 87 ----------------~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~----------~~~~~~~l~~~~~~LkpgG~li 139 (196)
T PRK07402 87 ----------------FGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG----------GRPIKEILQAVWQYLKPGGRLV 139 (196)
T ss_pred ----------------hCC-CCeEEEECchHHHHhhCCCCCCEEEEEC----------CcCHHHHHHHHHHhcCCCeEEE
Confidence 222 2477777776542222223456665421 1345788999999999999999
Q ss_pred EeeC
Q 047406 221 LEPQ 224 (290)
Q Consensus 221 i~~~ 224 (290)
+...
T Consensus 140 ~~~~ 143 (196)
T PRK07402 140 ATAS 143 (196)
T ss_pred EEee
Confidence 9754
No 92
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.31 E-value=2.3e-11 Score=107.45 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=81.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.++||+|||.|..+..+|.+ +..|+++|+|+.+++.+...+..
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~-------------------------------- 74 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEE-------------------------------- 74 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHH--------------------------------
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhh--------------------------------
Confidence 35689999999999999999997 56899999999999998775543
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++ .|.....|+.+. . ..+.||+|++..++++++ .+....++.++...++|||+++
T Consensus 75 ----------------~~l--~i~~~~~Dl~~~-~-~~~~yD~I~st~v~~fL~----~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 75 ----------------EGL--DIRTRVADLNDF-D-FPEEYDFIVSTVVFMFLQ----RELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp ----------------TT---TEEEEE-BGCCB-S--TTTEEEEEEESSGGGS-----GGGHHHHHHHHHHTEEEEEEEE
T ss_pred ----------------cCc--eeEEEEecchhc-c-ccCCcCEEEEEEEeccCC----HHHHHHHHHHHHhhcCCcEEEE
Confidence 233 378888887653 2 246899999988887664 4677899999999999999998
Q ss_pred Eee
Q 047406 221 LEP 223 (290)
Q Consensus 221 i~~ 223 (290)
++.
T Consensus 131 i~~ 133 (192)
T PF03848_consen 131 IVT 133 (192)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.30 E-value=2.8e-11 Score=115.75 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=86.5
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
..+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+.++..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~---------------------------------- 242 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA---------------------------------- 242 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 4589999999999999999988878999999999999999998765
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+++. ..+...|.... ..++||+|+|+..+|+. +....+....++.++.+.|+|||.|++.
T Consensus 243 --------------n~l~--~~~~~~D~~~~---~~~~fDlIvsNPPFH~g-~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 243 --------------NGLE--GEVFASNVFSD---IKGRFDMIISNPPFHDG-IQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred --------------cCCC--CEEEEcccccc---cCCCccEEEECCCccCC-ccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 2221 34556665442 35789999999887642 1223356689999999999999999997
Q ss_pred eCCCc
Q 047406 223 PQPWV 227 (290)
Q Consensus 223 ~~~~~ 227 (290)
...+.
T Consensus 303 an~~l 307 (342)
T PRK09489 303 ANAFL 307 (342)
T ss_pred EeCCC
Confidence 65433
No 94
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.28 E-value=2.4e-11 Score=106.86 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=86.1
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
...++||||||+|.++..+|+.+|..+++|+|+++.+++.|..++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--------------------------------- 62 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--------------------------------- 62 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH---------------------------------
Confidence 45799999999999999999999888999999999999999887765
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCc
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGG 217 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG 217 (290)
.++ .++.+.+.|+.+.. ..+.+.+|.|+++....|..-..... ....++..+.++|+|||
T Consensus 63 ---------------~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG 126 (194)
T TIGR00091 63 ---------------LGL-KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG 126 (194)
T ss_pred ---------------hCC-CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCC
Confidence 233 26889999986521 12346899999876554431100000 11578999999999999
Q ss_pred EEEEeeC
Q 047406 218 IFVLEPQ 224 (290)
Q Consensus 218 ~l~i~~~ 224 (290)
.|++...
T Consensus 127 ~l~~~td 133 (194)
T TIGR00091 127 VIHFKTD 133 (194)
T ss_pred EEEEEeC
Confidence 9999754
No 95
>PRK06202 hypothetical protein; Provisional
Probab=99.28 E-value=4.5e-11 Score=107.45 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=74.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK 136 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (290)
.++.+|||+|||+|.++..++... +..+|+|+|+|+.+++.|+.....
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------------------------- 110 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------------------------- 110 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----------------------------
Confidence 456799999999999988887643 245899999999999999875321
Q ss_pred hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
. .+.+...+... ++.++++||+|+|+.++||+. ++....++.++.++++
T Consensus 111 --------------------~----~~~~~~~~~~~-l~~~~~~fD~V~~~~~lhh~~----d~~~~~~l~~~~r~~~-- 159 (232)
T PRK06202 111 --------------------P----GVTFRQAVSDE-LVAEGERFDVVTSNHFLHHLD----DAEVVRLLADSAALAR-- 159 (232)
T ss_pred --------------------C----CCeEEEEeccc-ccccCCCccEEEECCeeecCC----hHHHHHHHHHHHHhcC--
Confidence 1 13333333322 233557899999999998773 3456789999999998
Q ss_pred cEEEEe
Q 047406 217 GIFVLE 222 (290)
Q Consensus 217 G~l~i~ 222 (290)
|.+++.
T Consensus 160 ~~~~i~ 165 (232)
T PRK06202 160 RLVLHN 165 (232)
T ss_pred eeEEEe
Confidence 445553
No 96
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.24 E-value=5.6e-11 Score=103.71 Aligned_cols=136 Identities=22% Similarity=0.312 Sum_probs=100.8
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
.+|||+|||+|.+...|++.......+|+|+|+.+++.|+.-++.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~----------------------------------- 113 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER----------------------------------- 113 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh-----------------------------------
Confidence 399999999999999999886555689999999999998775544
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCC--chHHHHHHHHHHhhcCCCcEEEE
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG--DDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~--~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.+..+.|.|.+.|+.+. ....+.||+|+=-.++.-+.|..+ ...+.-.+..+.++|+|||+++|
T Consensus 114 -------------~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 114 -------------DGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred -------------cCCCcceeEEEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEE
Confidence 45555699999999884 445688999987666543433321 11223557788999999999999
Q ss_pred eeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 222 EPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
..-+ ++.++..+ .+++-||.....+..
T Consensus 180 tSCN----------------------~T~dELv~-~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 180 TSCN----------------------FTKDELVE-EFENFNFEYLSTVPT 206 (227)
T ss_pred EecC----------------------ccHHHHHH-HHhcCCeEEEEeecc
Confidence 5432 55577777 577788887776655
No 97
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.23 E-value=1.8e-10 Score=103.21 Aligned_cols=119 Identities=14% Similarity=0.088 Sum_probs=81.9
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||.|..+..+|.+ +.+|+|+|+|+.+++.+...... . ..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~---~---------------------~~----- 81 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGL---T---------------------PT----- 81 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCC---C---------------------cc-----
Confidence 47789999999999999999986 56899999999999976331100 0 00
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
...++.....-...+.+.+.|+.+......+.||.|+-..+++ |+ ..+.....+..+.++|+|||+++
T Consensus 82 --------~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~--~l--~~~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 82 --------VTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALI--AL--PEEMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred --------eeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhc--cC--CHHHHHHHHHHHHHHcCCCCeEE
Confidence 0000000000123589999999874222246799999988774 43 24556789999999999999866
Q ss_pred Ee
Q 047406 221 LE 222 (290)
Q Consensus 221 i~ 222 (290)
+.
T Consensus 150 l~ 151 (213)
T TIGR03840 150 LI 151 (213)
T ss_pred EE
Confidence 64
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.23 E-value=1.3e-10 Score=110.25 Aligned_cols=135 Identities=19% Similarity=0.128 Sum_probs=96.2
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
.+.++.+|||+|||+|.+++..+.. ...++|+|+|+.++..|+.++..
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~------------------------------ 226 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEH------------------------------ 226 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHH------------------------------
Confidence 4578899999999999998886553 45899999999999999998765
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh---hhhhcCCchHHHHHHHHHHhhcCC
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK---WIHLNWGDDGLITLFMRIWKLLRP 215 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~---~~~l~~~~~~~~~~l~~~~~~Lkp 215 (290)
.++.. +.+...|+.+ ++.+.+.||+|+|..-.. ........+....++..+.++|+|
T Consensus 227 ------------------~g~~~-i~~~~~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~ 286 (329)
T TIGR01177 227 ------------------YGIED-FFVKRGDATK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS 286 (329)
T ss_pred ------------------hCCCC-CeEEecchhc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC
Confidence 22222 6788888876 455567899999953210 000000012357899999999999
Q ss_pred CcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 216 GGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 216 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
||.+++..+.. .++.+ +++.+|| ++..+..
T Consensus 287 gG~lv~~~~~~------------------------~~~~~-~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 287 EGWIVYAVPTR------------------------IDLES-LAEDAFR-VVKRFEV 316 (329)
T ss_pred CcEEEEEEcCC------------------------CCHHH-HHhhcCc-chheeee
Confidence 99999865421 12333 6888999 7776664
No 99
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=99.22 E-value=1.3e-11 Score=113.50 Aligned_cols=178 Identities=19% Similarity=0.168 Sum_probs=110.9
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..|.++||||||+-......|..+ ..+|+..|.++..++..+++++. + .+++|.|+.++.+.+|.....
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~---------~-~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRK---------E-GAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-----------TS--THHHHHHHHHHTTSSSG
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCC---------C-CCCCccHHHHHHHhccCCcch
Confidence 356799999999987755544332 34899999999999999999876 5 899999999999988853322
Q ss_pred HHHHHHhhhcCCCccccCcCcce-eEeecccccCCCCCC-----CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406 141 AQEEKKAISRNCSPAERNLFDIV-SFKQENFVHGRDSPE-----KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR 214 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~-----~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk 214 (290)
..+ ++. .+...| .+...|..+.-|... .+||+|++.+++... .-+.+.....++++.++||
T Consensus 124 ~~e-~e~----------~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a--~~d~~~y~~al~ni~~lLk 190 (256)
T PF01234_consen 124 WEE-KEE----------KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA--CKDLDEYRRALRNISSLLK 190 (256)
T ss_dssp HHH-HHH----------HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH---SSHHHHHHHHHHHHTTEE
T ss_pred hhh-HHH----------HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH--cCCHHHHHHHHHHHHHHcC
Confidence 211 111 122222 356667666433322 359999999999644 3456677899999999999
Q ss_pred CCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406 215 PGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI 269 (290)
Q Consensus 215 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~ 269 (290)
|||.|++...-- ..........|+.+.+. +++.+..++++||.+++..
T Consensus 191 pGG~Lil~~~l~------~t~Y~vG~~~F~~l~l~-ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 191 PGGHLILAGVLG------STYYMVGGHKFPCLPLN-EEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEEEEEEEEESS-------SEEEETTEEEE---B--HHHHHHHHHHTTEEEEEEE
T ss_pred CCcEEEEEEEcC------ceeEEECCEecccccCC-HHHHHHHHHHcCCEEEecc
Confidence 999999953211 11111111224444444 4455558999999988776
No 100
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.22 E-value=1.1e-10 Score=104.14 Aligned_cols=103 Identities=24% Similarity=0.278 Sum_probs=80.1
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
..++.+|||||||+|..+..++...+ ..+|+++|+++.+++.|+.++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~------------------------------ 124 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK------------------------------ 124 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence 35789999999999999999998764 24699999999999999998765
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.++ +++.+...|..+..+ ...+||+|++..... .+...+.+.|+|||+
T Consensus 125 ------------------~g~-~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~------------~~~~~~~~~L~~gG~ 172 (215)
T TIGR00080 125 ------------------LGL-DNVIVIVGDGTQGWE-PLAPYDRIYVTAAGP------------KIPEALIDQLKEGGI 172 (215)
T ss_pred ------------------CCC-CCeEEEECCcccCCc-ccCCCCEEEEcCCcc------------cccHHHHHhcCcCcE
Confidence 233 358888888876422 346899999865542 233567889999999
Q ss_pred EEEeeC
Q 047406 219 FVLEPQ 224 (290)
Q Consensus 219 l~i~~~ 224 (290)
+++...
T Consensus 173 lv~~~~ 178 (215)
T TIGR00080 173 LVMPVG 178 (215)
T ss_pred EEEEEc
Confidence 999644
No 101
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.22 E-value=2.1e-10 Score=102.41 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=87.8
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|||+|||+|.++..+++..+. ..|+|+|+++. ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~------------------------------ 89 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP------------------------------ 89 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC------------------------------
Confidence 467899999999999999999888643 58999999871 00
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-------CCCCCceeEEEEchhhhhhhhcCCc-----hHHHHHH
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-------DSPEKYYDAILCLSVTKWIHLNWGD-----DGLITLF 206 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~fD~I~~~~vl~~~~l~~~~-----~~~~~~l 206 (290)
+ .++.+.++|+.+.. +...++||+|+|....+|.....-+ .....++
T Consensus 90 --------------------~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L 148 (209)
T PRK11188 90 --------------------I-VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELAL 148 (209)
T ss_pred --------------------C-CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHH
Confidence 1 13678888887621 1345789999997665542210000 0125789
Q ss_pred HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHH--cCCeeeEeccC
Q 047406 207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDK--IGFRTVEDIGS 271 (290)
Q Consensus 207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--~Gf~~v~~~~~ 271 (290)
+.+.++|+|||.|++.. +..+.+.+ ++.. ..|..++++.+
T Consensus 149 ~~~~~~LkpGG~~vi~~------------------------~~~~~~~~-~l~~l~~~f~~v~~~Kp 190 (209)
T PRK11188 149 DMCRDVLAPGGSFVVKV------------------------FQGEGFDE-YLREIRSLFTKVKVRKP 190 (209)
T ss_pred HHHHHHcCCCCEEEEEE------------------------ecCcCHHH-HHHHHHhCceEEEEECC
Confidence 99999999999999953 22333444 3343 58999998877
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.3e-10 Score=103.71 Aligned_cols=103 Identities=22% Similarity=0.243 Sum_probs=80.2
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|||||||+|..+..+++..+. .+|+++|+++++++.|++++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~------------------------------ 123 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK------------------------------ 123 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence 358899999999999999998887543 5899999999999999998765
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.++ .++.+...|....+ .+..+||+|++....+ .+...+.+.|+|||.
T Consensus 124 ------------------~g~-~~v~~~~gd~~~~~-~~~~~fD~I~~~~~~~------------~~~~~l~~~LkpgG~ 171 (212)
T PRK13942 124 ------------------LGY-DNVEVIVGDGTLGY-EENAPYDRIYVTAAGP------------DIPKPLIEQLKDGGI 171 (212)
T ss_pred ------------------cCC-CCeEEEECCcccCC-CcCCCcCEEEECCCcc------------cchHHHHHhhCCCcE
Confidence 222 35889999986643 3457899999866542 223467778999999
Q ss_pred EEEeeC
Q 047406 219 FVLEPQ 224 (290)
Q Consensus 219 l~i~~~ 224 (290)
+++...
T Consensus 172 lvi~~~ 177 (212)
T PRK13942 172 MVIPVG 177 (212)
T ss_pred EEEEEc
Confidence 999644
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=99.20 E-value=3.2e-10 Score=101.55 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=82.1
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++.++..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~------------------------------- 81 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALL------------------------------- 81 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence 356789999999999999998875 445899999999999999988765
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhh----------hcC-----CchHHHH
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIH----------LNW-----GDDGLIT 204 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~----------l~~-----~~~~~~~ 204 (290)
.++ .+.+...|+.+. .+.+.||+|+|+.-....+ ..| +...+..
T Consensus 82 -----------------~~~--~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (223)
T PRK14967 82 -----------------AGV--DVDVRRGDWARA--VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDR 140 (223)
T ss_pred -----------------hCC--eeEEEECchhhh--ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHH
Confidence 222 366777887653 2457899999963211000 000 1123567
Q ss_pred HHHHHHhhcCCCcEEEEeeCCC
Q 047406 205 LFMRIWKLLRPGGIFVLEPQPW 226 (290)
Q Consensus 205 ~l~~~~~~LkpgG~l~i~~~~~ 226 (290)
+++++.++|+|||++++.....
T Consensus 141 ~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 141 LCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHhcCCCcEEEEEEecc
Confidence 8899999999999999965443
No 104
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.1e-10 Score=108.91 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=84.1
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
+.+|||+|||.|.+++.+++..|..+++.+|+|..+++.|+.++..
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~---------------------------------- 204 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA---------------------------------- 204 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----------------------------------
Confidence 4499999999999999999999988999999999999999999876
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+++... .+...|..+. ..++||+|+|+.-+|- ...-...-..+++....+.|++||.|.+.
T Consensus 205 --------------N~~~~~-~v~~s~~~~~---v~~kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 205 --------------NGVENT-EVWASNLYEP---VEGKFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred --------------cCCCcc-EEEEeccccc---ccccccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 333322 5666665543 2349999999887651 00001122358999999999999999997
Q ss_pred eC
Q 047406 223 PQ 224 (290)
Q Consensus 223 ~~ 224 (290)
..
T Consensus 266 an 267 (300)
T COG2813 266 AN 267 (300)
T ss_pred Ec
Confidence 65
No 105
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.19 E-value=3.3e-10 Score=103.83 Aligned_cols=142 Identities=19% Similarity=0.249 Sum_probs=93.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
...++||||.|.|.++..++..+. +|+++|+|+.|....++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k------------------------------------ 135 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK------------------------------------ 135 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC------------------------------------
Confidence 346899999999999999998765 799999999986554441
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
+ ......+- +...+.+||+|.|.++|..+ +.+..+|+++++.|+|+|++++
T Consensus 136 ----------------g----~~vl~~~~---w~~~~~~fDvIscLNvLDRc------~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 136 ----------------G----FTVLDIDD---WQQTDFKFDVISCLNVLDRC------DRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ----------------C----CeEEehhh---hhccCCceEEEeehhhhhcc------CCHHHHHHHHHHHhCCCCEEEE
Confidence 1 11222111 12234689999999999877 5789999999999999999999
Q ss_pred e-eCCCchhhhhhh-----hhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 222 E-PQPWVSYEKNRR-----VSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 222 ~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
. .-||..|-+... ..+.+.-.-....-.-..+. ..++.+||+++.....
T Consensus 187 AvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~~tr~ 241 (265)
T PF05219_consen 187 AVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEVERWTRL 241 (265)
T ss_pred EEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEEEEEecc
Confidence 3 344544433221 11111100000011112344 3788999999887654
No 106
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.18 E-value=4e-10 Score=84.54 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=80.7
Q ss_pred cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHH
Q 047406 65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEE 144 (290)
Q Consensus 65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (290)
+++|+|||+|..+..++. .+..+++++|+++.++..++.....
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------ 43 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA------------------------------------ 43 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc------------------------------------
Confidence 589999999999999887 4567999999999999988752211
Q ss_pred HHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 145 KKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
.....+.+...|+.+.......+||+|++..++++. ......+++.+.+.|+|+|.+++.
T Consensus 44 -------------~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 44 -------------LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------------ccccceEEEEcChhhhccccCCceEEEEEccceeeh-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 122357788888876432245789999999887542 357789999999999999999985
No 107
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.17 E-value=2.9e-10 Score=106.66 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=81.4
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
.+.++.+|||+|||+|..+..+++..+ ..+++++|+|+++++.|..++...
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---------------------------- 111 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---------------------------- 111 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh----------------------------
Confidence 345778999999999999999988765 468999999999999998876541
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC----ceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK----YYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL 213 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~----~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L 213 (290)
.....+.+.++|+.+..+.+.. ...++++...+.++ ..+....+|+++.+.|
T Consensus 112 --------------------~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~----~~~e~~~~L~~i~~~L 167 (301)
T TIGR03438 112 --------------------YPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF----TPEEAVAFLRRIRQLL 167 (301)
T ss_pred --------------------CCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCC----CHHHHHHHHHHHHHhc
Confidence 0112467788888764322222 22334434455433 3567889999999999
Q ss_pred CCCcEEEEe
Q 047406 214 RPGGIFVLE 222 (290)
Q Consensus 214 kpgG~l~i~ 222 (290)
+|||.|++.
T Consensus 168 ~pgG~~lig 176 (301)
T TIGR03438 168 GPGGGLLIG 176 (301)
T ss_pred CCCCEEEEe
Confidence 999999983
No 108
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.16 E-value=1.4e-10 Score=106.98 Aligned_cols=96 Identities=22% Similarity=0.325 Sum_probs=74.7
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCC---ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNC---RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~---~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
...+|||+|||+|.++..+++..+. ..++|+|+|+.+++.|.+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------------------------------- 132 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------------------------------- 132 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------------------------------
Confidence 4478999999999999999887653 37899999999999986531
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
..+.+...|..+ ++.++++||+|++.... ..+.++.++|+|||+
T Consensus 133 ----------------------~~~~~~~~d~~~-lp~~~~sfD~I~~~~~~-------------~~~~e~~rvLkpgG~ 176 (272)
T PRK11088 133 ----------------------PQVTFCVASSHR-LPFADQSLDAIIRIYAP-------------CKAEELARVVKPGGI 176 (272)
T ss_pred ----------------------CCCeEEEeeccc-CCCcCCceeEEEEecCC-------------CCHHHHHhhccCCCE
Confidence 136677778765 56677899999985432 135788999999999
Q ss_pred EEEeeCC
Q 047406 219 FVLEPQP 225 (290)
Q Consensus 219 l~i~~~~ 225 (290)
+++..+.
T Consensus 177 li~~~p~ 183 (272)
T PRK11088 177 VITVTPG 183 (272)
T ss_pred EEEEeCC
Confidence 9997653
No 109
>PTZ00146 fibrillarin; Provisional
Probab=99.16 E-value=9e-10 Score=103.04 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=92.0
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|||+|||+|.++..++...+ ...|+++|+++.+++........
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------------------------------ 179 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------------------------------ 179 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------------------------------
Confidence 46889999999999999999998864 34899999998776555543221
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
..++.+...|.... +..+...+|+|++.... .++...++.++.+.|+||
T Consensus 180 ---------------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~--------pdq~~il~~na~r~LKpG 230 (293)
T PTZ00146 180 ---------------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ--------PDQARIVALNAQYFLKNG 230 (293)
T ss_pred ---------------------cCCCEEEECCccChhhhhcccCCCCEEEEeCCC--------cchHHHHHHHHHHhccCC
Confidence 12466777776542 12233579999986532 234556677899999999
Q ss_pred cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhH----HHHHHHHcCCeeeEeccC
Q 047406 217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEF----QEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ll~~~Gf~~v~~~~~ 271 (290)
|.|++... +.+ ......+++. .+ .|+++||+.++.+..
T Consensus 231 G~~vI~ik-a~~---------------id~g~~pe~~f~~ev~-~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 231 GHFIISIK-ANC---------------IDSTAKPEVVFASEVQ-KLKKEGLKPKEQLTL 272 (293)
T ss_pred CEEEEEEe-ccc---------------cccCCCHHHHHHHHHH-HHHHcCCceEEEEec
Confidence 99999421 111 1112222332 23 689999999888776
No 110
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.14 E-value=2.8e-10 Score=101.15 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=101.8
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
..+|++|||+|..-...-. -|..+|+++|.++.+-+.+.+.++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E----------------------------------- 121 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAE----------------------------------- 121 (252)
T ss_pred cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhh-----------------------------------
Confidence 4689999999987444222 2456999999999999999887654
Q ss_pred HHHhhhcCCCccccCcCccee-EeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 144 EKKAISRNCSPAERNLFDIVS-FKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
. -+..+. |...+..+.-+.+++++|.|+|..++ |+. +++.+.|.++.++|+|||++++-
T Consensus 122 -------------~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL--CSv----e~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 122 -------------K-KPLQVERFVVADGENLPQLADGSYDTVVCTLVL--CSV----EDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred -------------c-cCcceEEEEeechhcCcccccCCeeeEEEEEEE--ecc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 1 112344 67777666333578999999999998 443 68899999999999999999994
Q ss_pred eCCCchhhhhhhhhhh-----hhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 223 PQPWVSYEKNRRVSET-----TATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.+.-..|....+.... +....++..++.+... +|+.+-|+.++....
T Consensus 182 EHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e--~Leda~f~~~~~kr~ 233 (252)
T KOG4300|consen 182 EHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGE--LLEDAEFSIDSCKRF 233 (252)
T ss_pred ecccccchHHHHHHHHHhchhhheeccceEEehhHHH--Hhhhcccccchhhcc
Confidence 4333233332222222 2223344456666554 578899987766544
No 111
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.13 E-value=9.8e-11 Score=105.44 Aligned_cols=139 Identities=21% Similarity=0.341 Sum_probs=94.6
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
.++||+|||+|..+..+-.. ...++|+|||++|++.|...-
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg------------------------------------- 167 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKG------------------------------------- 167 (287)
T ss_pred ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhcc-------------------------------------
Confidence 69999999999988887655 448999999999999987621
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+.+.+ .+.+....++ ....+||+|..-.|+.|+ -.++.++--+..+|+|||.|.|+
T Consensus 168 ---------------~YD~L--~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl------G~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 168 ---------------LYDTL--YVAEAVLFLEDLTQERFDLIVAADVLPYL------GALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred ---------------chHHH--HHHHHHHHhhhccCCcccchhhhhHHHhh------cchhhHHHHHHHhcCCCceEEEE
Confidence 11100 1111111111 234789999999999777 36889999999999999999996
Q ss_pred eCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 223 PQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.-....... +.......| -.++.+++.++...||+++++-..
T Consensus 225 vE~l~~~~~---f~l~ps~Ry----AH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 225 VETLPDDGG---FVLGPSQRY----AHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred ecccCCCCC---eecchhhhh----ccchHHHHHHHHhcCceEEEeecc
Confidence 432111100 111111112 356888888999999999887543
No 112
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.12 E-value=6.6e-10 Score=99.96 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=81.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||.|..+..||++ +.+|+|+|+|+.+++.+...... .... .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l-------~~~~-------------------~- 86 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGL-------TPQT-------------------R- 86 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCC-------Cccc-------------------c-
Confidence 46789999999999999999986 56899999999999986431100 0000 0
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
............+.+.+.|+.+..+...+.||+|+-..+++.+ ..+.....+..+.++|+|||+++
T Consensus 87 ----------~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l----~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 87 ----------QSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL----PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ----------ccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC----CHHHHHHHHHHHHHHcCCCCeEE
Confidence 0000001113468899999987432233689999998887433 24566899999999999999755
Q ss_pred E
Q 047406 221 L 221 (290)
Q Consensus 221 i 221 (290)
+
T Consensus 153 l 153 (218)
T PRK13255 153 L 153 (218)
T ss_pred E
Confidence 5
No 113
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.12 E-value=1.5e-09 Score=112.73 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=101.3
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
..+.++.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|+.|+..
T Consensus 534 ~~~~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~----------------------------- 583 (702)
T PRK11783 534 GQMAKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFAL----------------------------- 583 (702)
T ss_pred HHhcCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH-----------------------------
Confidence 34457899999999999999998874 555899999999999999999876
Q ss_pred hhhHHHHHHhhhcCCCccccCcC-cceeEeecccccCCCCCCCceeEEEEchhhh----hh-hhcCCchHHHHHHHHHHh
Q 047406 138 VTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDSPEKYYDAILCLSVTK----WI-HLNWGDDGLITLFMRIWK 211 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~----~~-~l~~~~~~~~~~l~~~~~ 211 (290)
+++. ..+.+.+.|..+.+.....+||+|++..-.- .. ...-...+...++..+.+
T Consensus 584 -------------------ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~ 644 (702)
T PRK11783 584 -------------------NGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR 644 (702)
T ss_pred -------------------hCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 3443 4688999997653222246899999953210 00 000012455788999999
Q ss_pred hcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCC
Q 047406 212 LLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSS 276 (290)
Q Consensus 212 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~ 276 (290)
+|+|||+++++... .+ +. ....++.++||.+..+...+.++.
T Consensus 645 lL~~gG~l~~~~~~------------------~~--~~---~~~~~~~~~g~~~~~i~~~~~~~D 686 (702)
T PRK11783 645 LLRPGGTLYFSNNK------------------RG--FK---MDEEGLAKLGLKAEEITAKTLPPD 686 (702)
T ss_pred HcCCCCEEEEEeCC------------------cc--CC---hhHHHHHhCCCeEEEEecCCCCCC
Confidence 99999999986431 11 11 113367889999777765544433
No 114
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=100.54 Aligned_cols=105 Identities=21% Similarity=0.338 Sum_probs=83.1
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
..-|||||||+|..+..+... .-.++|+|||+.|++.|... .
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~--e---------------------------------- 92 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER--E---------------------------------- 92 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh--h----------------------------------
Confidence 567999999999988887654 45789999999999999872 1
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcC-----CchHHHHHHHHHHhhcCCCc
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNW-----GDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~-----~~~~~~~~l~~~~~~LkpgG 217 (290)
+ .-++..+|+-+.+|+.++.||-+++...+||+-... ...-+..+|..++.+|++|+
T Consensus 93 ----------------~--egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 93 ----------------L--EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGA 154 (270)
T ss_pred ----------------h--hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCc
Confidence 0 034677777788999999999999999999963221 22334678889999999999
Q ss_pred EEEEee
Q 047406 218 IFVLEP 223 (290)
Q Consensus 218 ~l~i~~ 223 (290)
..+++.
T Consensus 155 raV~Qf 160 (270)
T KOG1541|consen 155 RAVLQF 160 (270)
T ss_pred eeEEEe
Confidence 999974
No 115
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=2e-09 Score=99.91 Aligned_cols=135 Identities=10% Similarity=0.134 Sum_probs=94.2
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..+.+|||+|||+|.++..++.+.+..+|+++|+|+.+++.++.+.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------------------------------- 108 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------------------------------- 108 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------------------------------
Confidence 3457999999999999998888765679999999999999887642
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhh---------hhcCCc---hH--HHHHH
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWI---------HLNWGD---DG--LITLF 206 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~---------~l~~~~---~~--~~~~l 206 (290)
..+.+...|+.+. . ....||+|+++.-..+. ....+. +. +..++
T Consensus 109 --------------------~~v~~v~~D~~e~-~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l 166 (279)
T PHA03411 109 --------------------PEAEWITSDVFEF-E-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKF 166 (279)
T ss_pred --------------------cCCEEEECchhhh-c-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHH
Confidence 1367788888763 2 24689999996554321 111111 11 35677
Q ss_pred HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeE
Q 047406 207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE 267 (290)
Q Consensus 207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~ 267 (290)
.....+|+|+|.+++.-. . ..+-|..+.++++.. +++.+||....
T Consensus 167 ~~v~~~L~p~G~~~~~ys------s---------~~~y~~sl~~~~y~~-~l~~~g~~~~~ 211 (279)
T PHA03411 167 ADVGYFIVPTGSAGFAYS------G---------RPYYDGTMKSNKYLK-WSKQTGLVTYA 211 (279)
T ss_pred hhhHheecCCceEEEEEe------c---------cccccccCCHHHHHH-HHHhcCcEecC
Confidence 888889999997777311 1 112244577888877 89999997543
No 116
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.11 E-value=2e-10 Score=104.04 Aligned_cols=100 Identities=17% Similarity=0.321 Sum_probs=73.2
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
..+||+|||+|..++.+|..+. +|+|+|+|+.+|+.|+++-..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~----------------------------------- 77 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPV----------------------------------- 77 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCc-----------------------------------
Confidence 3899999999988787777754 899999999999998875221
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc-EEEE
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG-IFVL 221 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG-~l~i 221 (290)
........+...+..+ +-.++.+.|+|+|...+||+. +.++++++.++|+++| ++++
T Consensus 78 -------------~y~~t~~~ms~~~~v~-L~g~e~SVDlI~~Aqa~HWFd-------le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 78 -------------TYCHTPSTMSSDEMVD-LLGGEESVDLITAAQAVHWFD-------LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -------------ccccCCcccccccccc-ccCCCcceeeehhhhhHHhhc-------hHHHHHHHHHHcCCCCCEEEE
Confidence 1111112222223322 233478999999999999994 6899999999999877 6555
No 117
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.09 E-value=7.9e-10 Score=100.36 Aligned_cols=110 Identities=21% Similarity=0.355 Sum_probs=86.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.++.+|||+|||+|..++.++...+ ..+|+++|+++++++.|++++..
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~------------------------------- 115 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK------------------------------- 115 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence 5678999999999998888887654 46999999999999999999876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-----CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-----PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR 214 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk 214 (290)
.++.+.+.+..+|..+.++. +.++||+|++- ..++....++..+.++|+
T Consensus 116 -----------------~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiD---------a~k~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 116 -----------------AGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVD---------ADKPNYVHFHEQLLKLVK 169 (234)
T ss_pred -----------------cCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEEC---------CCHHHHHHHHHHHHHhcC
Confidence 44555688999888763221 24689999963 223556788999999999
Q ss_pred CCcEEEEeeCCCc
Q 047406 215 PGGIFVLEPQPWV 227 (290)
Q Consensus 215 pgG~l~i~~~~~~ 227 (290)
|||++++...-|.
T Consensus 170 ~GG~ii~dn~l~~ 182 (234)
T PLN02781 170 VGGIIAFDNTLWF 182 (234)
T ss_pred CCeEEEEEcCCcC
Confidence 9999998655453
No 118
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.09 E-value=9.2e-10 Score=106.71 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=87.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+..+||||||+|.++..+|+..|...++|+|+++.+++.|...+..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~--------------------------------- 168 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL--------------------------------- 168 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 45799999999999999999999988999999999999999887654
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCch---HHHHHHHHHHhhcCCCc
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDD---GLITLFMRIWKLLRPGG 217 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~---~~~~~l~~~~~~LkpgG 217 (290)
.++ .++.+.+.|.... ...+++.+|.|++++...|.. ..+ ....++..+.++|+|||
T Consensus 169 ---------------~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~K---krHRRlv~~~fL~e~~RvLkpGG 229 (390)
T PRK14121 169 ---------------LNL-KNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDK---KPHRRVISEDFLNEALRVLKPGG 229 (390)
T ss_pred ---------------cCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccc---cchhhccHHHHHHHHHHHcCCCc
Confidence 333 3588888887542 134678999999876554421 000 12578999999999999
Q ss_pred EEEEeeC
Q 047406 218 IFVLEPQ 224 (290)
Q Consensus 218 ~l~i~~~ 224 (290)
.+.+.+.
T Consensus 230 ~l~l~TD 236 (390)
T PRK14121 230 TLELRTD 236 (390)
T ss_pred EEEEEEE
Confidence 9999664
No 119
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.08 E-value=1.7e-09 Score=95.98 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=77.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|..+..++... .+++++|+++.+++.|++++..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~-------------------------------- 122 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQ-------------------------------- 122 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 577899999999999998887764 3899999999999999988765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.++. ++.+...|..+..+ ..++||+|++....++ +...+.+.|+|||.++
T Consensus 123 ----------------~~~~-~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~------------~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 123 ----------------LGLH-NVSVRHGDGWKGWP-AYAPFDRILVTAAAPE------------IPRALLEQLKEGGILV 172 (212)
T ss_pred ----------------CCCC-ceEEEECCcccCCC-cCCCcCEEEEccCchh------------hhHHHHHhcCCCcEEE
Confidence 2222 37888888765332 3478999999765532 2356788999999999
Q ss_pred EeeC
Q 047406 221 LEPQ 224 (290)
Q Consensus 221 i~~~ 224 (290)
+...
T Consensus 173 ~~~~ 176 (212)
T PRK00312 173 APVG 176 (212)
T ss_pred EEEc
Confidence 9654
No 120
>PRK04457 spermidine synthase; Provisional
Probab=99.07 E-value=4.4e-10 Score=103.70 Aligned_cols=112 Identities=16% Similarity=0.089 Sum_probs=83.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||||||+|.++..++..+|..+|+++|+++.+++.|+.++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-------------------------------- 112 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL-------------------------------- 112 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------------------------------
Confidence 456899999999999999999988888999999999999999986532
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.+...++.+...|..+.......+||+|++...-. .... ..-....++.++.++|+|||+++
T Consensus 113 ----------------~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~-~~~~-~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 113 ----------------PENGERFEVIEADGAEYIAVHRHSTDVILVDGFDG-EGII-DALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred ----------------CCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCC-CCCc-cccCcHHHHHHHHHhcCCCcEEE
Confidence 22234688888887654333346899999742100 0000 00112689999999999999999
Q ss_pred Ee
Q 047406 221 LE 222 (290)
Q Consensus 221 i~ 222 (290)
+.
T Consensus 175 in 176 (262)
T PRK04457 175 VN 176 (262)
T ss_pred EE
Confidence 95
No 121
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=9.7e-10 Score=99.60 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=101.8
Q ss_pred cEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 65 DCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 65 ~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
+||+||||.|....-+.+..+. ..|+++|.||.+++..+++..-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~---------------------------------- 119 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY---------------------------------- 119 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc----------------------------------
Confidence 8999999999887777787776 6899999999999998886432
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
. ...+.....|+... .+...+++|.|.+.+++.=+ +.+.+...+.++.++|+|||.+
T Consensus 120 --------------~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi----~pek~~~a~~nl~~llKPGG~l 179 (264)
T KOG2361|consen 120 --------------D--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI----HPEKMQSVIKNLRTLLKPGGSL 179 (264)
T ss_pred --------------c--hhhhcccceeccchhccCCCCcCccceEEEEEEEecc----ChHHHHHHHHHHHHHhCCCcEE
Confidence 0 01222233333321 23456899999999998433 4578899999999999999999
Q ss_pred EEeeCCCchhhhhh-----hhhhhhhcccc--ccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 220 VLEPQPWVSYEKNR-----RVSETTATNFQ--NIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 220 ~i~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++..-..-...+.+ .+.+...-.-+ ...+.+++..+.++.++||..++....
T Consensus 180 lfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 180 LFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred EEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 99532111111111 11111111112 224666777777999999998876544
No 122
>PRK00811 spermidine synthase; Provisional
Probab=99.04 E-value=1.7e-09 Score=100.82 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=84.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
+.+.+||+||||+|..+..+++..+..+|+++|+|+.+++.|++++....
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~------------------------------ 124 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA------------------------------ 124 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhc------------------------------
Confidence 45689999999999999998876556699999999999999999765410
Q ss_pred HHHHHHhhhcCCCccccCc--CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCC
Q 047406 141 AQEEKKAISRNCSPAERNL--FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPG 216 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~Lkpg 216 (290)
.+. ..++.+...|....+....++||+|++-..-.+. .... ...++..+.+.|+||
T Consensus 125 ----------------~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~----~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 125 ----------------GGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVG----PAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred ----------------cccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCC----chhhhhHHHHHHHHHHhcCCC
Confidence 111 2358888888776443456789999985432211 1112 267889999999999
Q ss_pred cEEEEeeC
Q 047406 217 GIFVLEPQ 224 (290)
Q Consensus 217 G~l~i~~~ 224 (290)
|++++...
T Consensus 185 Gvlv~~~~ 192 (283)
T PRK00811 185 GIFVAQSG 192 (283)
T ss_pred cEEEEeCC
Confidence 99999643
No 123
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.04 E-value=1.2e-09 Score=97.99 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=94.1
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
-.++||.|+|-|+++..+.... ...|-.+|.++.-++.|+..+..
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~---------------------------------- 100 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGK---------------------------------- 100 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC----------------------------------
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcc----------------------------------
Confidence 4689999999999998775544 34899999999999999875321
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+......+.+..+.+.. ...+.||+|+|-+++-|+ .++++..+|.++...|+|+|++++-
T Consensus 101 ---------------~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lghL----TD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 101 ---------------DNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLGHL----TDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ---------------GGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS-----HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------cCCCcceEEecCHhhcc-CCCCcEeEEEehHhhccC----CHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 11223556666655432 234799999998777433 5899999999999999999999994
Q ss_pred eCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 223 PQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
...-. ........-++.-.++++....++++||+++++...+
T Consensus 161 EN~~~-------~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 161 ENVSS-------SGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp EEEES-------SSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ecCCC-------CCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 32100 0001112223333445555555999999999998877
No 124
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.02 E-value=1.3e-09 Score=98.37 Aligned_cols=99 Identities=23% Similarity=0.361 Sum_probs=82.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.+..+|+|||+|+|.++..+++.+|..+++..|+ |.+++.++.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------------------------------------ 141 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------------------------------------ 141 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------------------------------------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------------------------------------
Confidence 4557899999999999999999999999999999 888877765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC--cE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG--GI 218 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg--G~ 218 (290)
.+++.+..+|+.+ +.|. +|+|+..+++| +|++++...+|+++.+.|+|| |.
T Consensus 142 -------------------~~rv~~~~gd~f~--~~P~--~D~~~l~~vLh----~~~d~~~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 142 -------------------ADRVEFVPGDFFD--PLPV--ADVYLLRHVLH----DWSDEDCVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp -------------------TTTEEEEES-TTT--CCSS--ESEEEEESSGG----GS-HHHHHHHHHHHHHHSEECTTEE
T ss_pred -------------------ccccccccccHHh--hhcc--ccceeeehhhh----hcchHHHHHHHHHHHHHhCCCCCCe
Confidence 1369999999985 3343 99999999986 577899999999999999999 99
Q ss_pred EEEee
Q 047406 219 FVLEP 223 (290)
Q Consensus 219 l~i~~ 223 (290)
|+|..
T Consensus 195 llI~e 199 (241)
T PF00891_consen 195 LLIIE 199 (241)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99954
No 125
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.02 E-value=2.7e-09 Score=101.73 Aligned_cols=122 Identities=16% Similarity=0.318 Sum_probs=80.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||-|.-..-.... ....++|+||++.+++.|+..........+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~-------------------------- 114 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNS-------------------------- 114 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT---------------------------
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhcccccc--------------------------
Confidence 7899999999999876666553 3458999999999999999987442110000
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccC-----CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
..........|...|.... .+....+||+|.|-+.+||..- ..+..+.+|.++..+|+||
T Consensus 115 -------------~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe--se~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 115 -------------KQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFE--SEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp -------------HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGS--SHHHHHHHHHHHHHTEEEE
T ss_pred -------------ccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcC--CHHHHHHHHHHHHHhcCCC
Confidence 0011122355666665432 2222369999999999987632 4555678999999999999
Q ss_pred cEEEEeeCC
Q 047406 217 GIFVLEPQP 225 (290)
Q Consensus 217 G~l~i~~~~ 225 (290)
|+++...+.
T Consensus 180 G~FIgT~~d 188 (331)
T PF03291_consen 180 GYFIGTTPD 188 (331)
T ss_dssp EEEEEEEE-
T ss_pred CEEEEEecC
Confidence 999996653
No 126
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.01 E-value=7.8e-09 Score=96.19 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=115.7
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
...+||||.||.|....-.....+. .+|...|+|+..++..++.+..
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~------------------------------- 183 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE------------------------------- 183 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence 4579999999999988887777775 6999999999999999998876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.++.+.+.|.+.|..+. +......+++++.+.+...+. +.+-....+..+.+++.|||
T Consensus 184 -----------------~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~---Dn~lv~~sl~gl~~al~pgG 243 (311)
T PF12147_consen 184 -----------------RGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFP---DNDLVRRSLAGLARALEPGG 243 (311)
T ss_pred -----------------cCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCC---cHHHHHHHHHHHHHHhCCCc
Confidence 66767679999998874 223345679999988875442 33445778999999999999
Q ss_pred EEEEeeCCCchhhh--hhhhhhhhh-ccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 218 IFVLEPQPWVSYEK--NRRVSETTA-TNFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 218 ~l~i~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
+++...+||..-.+ ++.++..-. ..| .++..++.....|++.+||+.++...
T Consensus 244 ~lIyTgQPwHPQle~IAr~LtsHr~g~~W-vMRrRsq~EmD~Lv~~aGF~K~~q~I 298 (311)
T PF12147_consen 244 YLIYTGQPWHPQLEMIARVLTSHRDGKAW-VMRRRSQAEMDQLVEAAGFEKIDQRI 298 (311)
T ss_pred EEEEcCCCCCcchHHHHHHHhcccCCCce-EEEecCHHHHHHHHHHcCCchhhhee
Confidence 99999999977554 222222111 122 23445555556699999999665433
No 127
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=1.3e-08 Score=93.89 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=104.9
Q ss_pred HHHHhhhcCCCcccccccccccccccc--CCCCCc-----hhhHHhh-----hhccCCCcEEEecCCCChhhHHHHhHcC
Q 047406 18 AQQLKKRKGKDVFPFGNYKNYYGYRIG--QGLNED-----PRFKVLK-----KEWFEGKDCLDIGCNSGIITIQIAQKFN 85 (290)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~l~~l~-----~~~~~~~~vLDiGcG~G~~~~~la~~~~ 85 (290)
....|.++-..+|++| ...|-+..+. +++... ++.+.+. .++..+..+||+|||+|+++..++...+
T Consensus 93 ~~~~R~~r~PlQYIlg-~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~ 171 (328)
T KOG2904|consen 93 ACLQRYKRMPLQYILG-SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP 171 (328)
T ss_pred HHHHHHhcCChhheec-cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC
Confidence 3344555556899999 3455443321 222111 1122222 2335566899999999999999999888
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeE
Q 047406 86 CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSF 165 (290)
Q Consensus 86 ~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 165 (290)
...|+++|.|+.++..|.+|+.+ ..+...+.+
T Consensus 172 ~~~v~AiD~S~~Ai~La~eN~qr------------------------------------------------~~l~g~i~v 203 (328)
T KOG2904|consen 172 QCTVTAIDVSKAAIKLAKENAQR------------------------------------------------LKLSGRIEV 203 (328)
T ss_pred CceEEEEeccHHHHHHHHHHHHH------------------------------------------------HhhcCceEE
Confidence 88999999999999999999877 334445555
Q ss_pred e----ecccccCCCCCCCceeEEEEchhh---------h--------hhhhcCCchHH---HHHHHHHHhhcCCCcEEEE
Q 047406 166 K----QENFVHGRDSPEKYYDAILCLSVT---------K--------WIHLNWGDDGL---ITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 166 ~----~~d~~~~~~~~~~~fD~I~~~~vl---------~--------~~~l~~~~~~~---~~~l~~~~~~LkpgG~l~i 221 (290)
. ..|.....+...+++|+++|+.-. + -..|+++.++. ..++.-..+.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 5 334433344566899999995211 0 13445544444 5677778899999999999
Q ss_pred eeC
Q 047406 222 EPQ 224 (290)
Q Consensus 222 ~~~ 224 (290)
+..
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 754
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.98 E-value=6.4e-09 Score=102.03 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=82.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.+|.+|||+|||+|..+..+++..+..+|+++|+++.+++.++.++..
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r-------------------------------- 284 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKR-------------------------------- 284 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 478999999999999999999887766999999999999999998876
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEc------hhhhhh-hhc--CCc-------hHHH
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCL------SVTKWI-HLN--WGD-------DGLI 203 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~------~vl~~~-~l~--~~~-------~~~~ 203 (290)
.++...+.+.+.|...... .+..+||.|++- .+++.. .+- +.. ..+.
T Consensus 285 ----------------~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~ 348 (426)
T TIGR00563 285 ----------------LGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQS 348 (426)
T ss_pred ----------------cCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHH
Confidence 2222224445555443111 134679999962 222100 000 111 1257
Q ss_pred HHHHHHHhhcCCCcEEEEeeCCC
Q 047406 204 TLFMRIWKLLRPGGIFVLEPQPW 226 (290)
Q Consensus 204 ~~l~~~~~~LkpgG~l~i~~~~~ 226 (290)
.+|..++++|+|||.|++++-.+
T Consensus 349 ~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 349 EILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCC
Confidence 89999999999999999976533
No 129
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=9.4e-09 Score=101.32 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=83.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.++.+|||+|||+|..+..++... +...|+++|+++.+++.++.++..
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~------------------------------- 297 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR------------------------------- 297 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence 567899999999999999999876 456899999999999999998876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh-------hhhh--cCCch-------HHH
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK-------WIHL--NWGDD-------GLI 203 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~-------~~~l--~~~~~-------~~~ 203 (290)
.++. ++.+...|+.+......+.||+|++..-.. +-.. .+... .+.
T Consensus 298 -----------------~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 359 (444)
T PRK14902 298 -----------------LGLT-NIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQL 359 (444)
T ss_pred -----------------cCCC-eEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHH
Confidence 3333 388888888653211126799999742110 0000 01111 235
Q ss_pred HHHHHHHhhcCCCcEEEEeeC
Q 047406 204 TLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 204 ~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.++..++++|+|||.++.++-
T Consensus 360 ~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 360 EILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred HHHHHHHHHcCCCCEEEEEcC
Confidence 789999999999999998653
No 130
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.98 E-value=1.1e-08 Score=94.20 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=82.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.+|.+|||+|||+|..+..+++.++. ..|+++|+++.+++.++.++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~------------------------------- 118 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR------------------------------- 118 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-------------------------------
Confidence 57899999999999999999887753 4899999999999999998876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch------hhhh---hhhcCCc-------hHHH
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS------VTKW---IHLNWGD-------DGLI 203 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~------vl~~---~~l~~~~-------~~~~ 203 (290)
.++ .++.+...|... .+...+.||.|++.. ++.. ....|.. ..+.
T Consensus 119 -----------------~g~-~~v~~~~~D~~~-~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~ 179 (264)
T TIGR00446 119 -----------------CGV-LNVAVTNFDGRV-FGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQK 179 (264)
T ss_pred -----------------cCC-CcEEEecCCHHH-hhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHH
Confidence 223 247777777654 222345699999731 1100 0001111 2346
Q ss_pred HHHHHHHhhcCCCcEEEEeeCC
Q 047406 204 TLFMRIWKLLRPGGIFVLEPQP 225 (290)
Q Consensus 204 ~~l~~~~~~LkpgG~l~i~~~~ 225 (290)
.+|..++++|+|||+|+.++-.
T Consensus 180 ~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 180 ELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHHhcCCCCEEEEEeCC
Confidence 7999999999999999997653
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.97 E-value=7.3e-09 Score=102.11 Aligned_cols=103 Identities=22% Similarity=0.283 Sum_probs=77.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.+++.+|... .+|+|+|+|+.+++.|+.++..
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~-------------------------------- 341 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARR-------------------------------- 341 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 467899999999999999998874 5899999999999999998765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.++ .++.+...|+.+... .....||+|++..-- .+...++..+.+ ++|++
T Consensus 342 ----------------~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr---------~g~~~~~~~l~~-~~~~~ 394 (443)
T PRK13168 342 ----------------NGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPR---------AGAAEVMQALAK-LGPKR 394 (443)
T ss_pred ----------------cCC-CceEEEEeChHHhhhhhhhhcCCCCEEEECcCC---------cChHHHHHHHHh-cCCCe
Confidence 233 248899998865321 234579999974332 223455555555 68999
Q ss_pred EEEEeeC
Q 047406 218 IFVLEPQ 224 (290)
Q Consensus 218 ~l~i~~~ 224 (290)
++++++.
T Consensus 395 ivyvSCn 401 (443)
T PRK13168 395 IVYVSCN 401 (443)
T ss_pred EEEEEeC
Confidence 9999865
No 132
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.97 E-value=3.9e-09 Score=90.16 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=47.6
Q ss_pred cceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 161 DIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 161 ~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
.++++.++|..+ ++.++++||+|++..+++|+ .+...++++++++|+|||.+++.
T Consensus 26 ~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~------~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 26 KCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNV------VDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CceEEEEechhh-CCCCCCCeeEEEecchhhcC------CCHHHHHHHHHHHcCcCeEEEEE
Confidence 358999999876 67778899999999999766 46789999999999999999874
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=6.3e-09 Score=92.88 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=80.6
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.++.+|||||||+|..+..||+... +|+.+|..+...+.|++++..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~------------------------------- 116 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLET------------------------------- 116 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHH-------------------------------
Confidence 36899999999999999999998744 999999999999999999876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
.++. ++.+.+.|....++. ..+||.|++..... .-+ ..+...|+|||++
T Consensus 117 -----------------lg~~-nV~v~~gDG~~G~~~-~aPyD~I~Vtaaa~--------~vP----~~Ll~QL~~gGrl 165 (209)
T COG2518 117 -----------------LGYE-NVTVRHGDGSKGWPE-EAPYDRIIVTAAAP--------EVP----EALLDQLKPGGRL 165 (209)
T ss_pred -----------------cCCC-ceEEEECCcccCCCC-CCCcCEEEEeeccC--------CCC----HHHHHhcccCCEE
Confidence 3443 399999999886543 48999999865542 112 3456677999999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
++-.+
T Consensus 166 v~PvG 170 (209)
T COG2518 166 VIPVG 170 (209)
T ss_pred EEEEc
Confidence 99554
No 134
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=1.3e-08 Score=100.04 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=82.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.+|.+|||+|||+|..+..++...+..+|+++|+|+.+++.++.++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~-------------------------------- 290 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR-------------------------------- 290 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 578999999999999999999887656899999999999999998765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchh------------hhhhhhcCCc-------h
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSV------------TKWIHLNWGD-------D 200 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~v------------l~~~~l~~~~-------~ 200 (290)
.++ .+.+...|..+... ....+||.|++..- ++|. +.. .
T Consensus 291 ----------------~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~---~~~~~l~~l~~ 349 (427)
T PRK10901 291 ----------------LGL--KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWL---RRPEDIAALAA 349 (427)
T ss_pred ----------------cCC--CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCcccccc---CCHHHHHHHHH
Confidence 222 25677777754211 12467999995321 1111 011 2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 201 GLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 201 ~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.+..++..++++|+|||++++++-
T Consensus 350 ~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 350 LQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeC
Confidence 346899999999999999998754
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=1.1e-08 Score=100.76 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=85.3
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
..+|.+|||+|||+|..+..++..++ ...|+++|+|+.+++.++.++..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------------------------ 284 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------------------------ 284 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence 35789999999999999999998764 45899999999999999998876
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhh---hhhh------hcCCc-------hHH
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVT---KWIH------LNWGD-------DGL 202 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl---~~~~------l~~~~-------~~~ 202 (290)
.++. ++.+...|.........++||.|++-.-+ ..+. ..+.. ..+
T Consensus 285 ------------------~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q 345 (431)
T PRK14903 285 ------------------LKLS-SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQ 345 (431)
T ss_pred ------------------cCCC-eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHH
Confidence 2332 37788888754211234679999972111 0000 00011 235
Q ss_pred HHHHHHHHhhcCCCcEEEEeeCCCc
Q 047406 203 ITLFMRIWKLLRPGGIFVLEPQPWV 227 (290)
Q Consensus 203 ~~~l~~~~~~LkpgG~l~i~~~~~~ 227 (290)
.++|.++++.|+|||++++++-.+.
T Consensus 346 ~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 346 LRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCC
Confidence 7889999999999999999876443
No 136
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=1.6e-08 Score=99.74 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=83.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.+|.+|||+|||+|..+..+++..+ ...|+++|+|+.+++.++.++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------------------------------- 297 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA------------------------------- 297 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence 5788999999999999998887654 34899999999999999998876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc----h--hh------hhhhhcCCc-------h
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL----S--VT------KWIHLNWGD-------D 200 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~----~--vl------~~~~l~~~~-------~ 200 (290)
.++ .++.+...|..+. + +..+||+|++- . ++ .|. +.. .
T Consensus 298 -----------------~g~-~~v~~~~~Da~~~-~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~---~~~~~~~~l~~ 354 (445)
T PRK14904 298 -----------------LGI-TIIETIEGDARSF-S-PEEQPDAILLDAPCTGTGVLGRRAELRWK---LTPEKLAELVG 354 (445)
T ss_pred -----------------hCC-CeEEEEeCccccc-c-cCCCCCEEEEcCCCCCcchhhcCcchhhc---CCHHHHHHHHH
Confidence 233 2478888887653 2 34689999962 1 11 111 111 2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406 201 GLITLFMRIWKLLRPGGIFVLEPQP 225 (290)
Q Consensus 201 ~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (290)
.+..++..++++|+|||++++++-.
T Consensus 355 ~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 355 LQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 3457999999999999999997653
No 137
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.94 E-value=4.7e-09 Score=91.46 Aligned_cols=106 Identities=17% Similarity=0.256 Sum_probs=71.7
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK 136 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (290)
..+.++.+|||+|||+|.++..++..+. ..+|+++|+|+.+ .
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~---------------------------- 70 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P---------------------------- 70 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c----------------------------
Confidence 4457889999999999999999888763 4579999999843 1
Q ss_pred hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-------CCCCCceeEEEEchhhh----hhh-hcCCchHHHH
Q 047406 137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-------DSPEKYYDAILCLSVTK----WIH-LNWGDDGLIT 204 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~fD~I~~~~vl~----~~~-l~~~~~~~~~ 204 (290)
...+.+.+.|+.+.. ..+.++||+|+|....+ |.. ..-..+.+..
T Consensus 71 -----------------------~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~ 127 (188)
T TIGR00438 71 -----------------------IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVEL 127 (188)
T ss_pred -----------------------CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHH
Confidence 012556666654410 12346799999854321 110 0000123478
Q ss_pred HHHHHHhhcCCCcEEEEee
Q 047406 205 LFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 205 ~l~~~~~~LkpgG~l~i~~ 223 (290)
++..+.++|+|||.+++..
T Consensus 128 ~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 128 ALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHccCCCEEEEEE
Confidence 9999999999999999963
No 138
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.94 E-value=9.5e-09 Score=97.65 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=77.2
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|||+|||+|.++..+++..+. ..|+++|+++.+++.|+.++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~------------------------------ 127 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR------------------------------ 127 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence 357789999999999999999987653 3699999999999999988765
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.++ +++.+...|..... ....+||+|++...+. .+...+.+.|+|||.
T Consensus 128 ------------------~g~-~nV~~i~gD~~~~~-~~~~~fD~Ii~~~g~~------------~ip~~~~~~LkpgG~ 175 (322)
T PRK13943 128 ------------------LGI-ENVIFVCGDGYYGV-PEFAPYDVIFVTVGVD------------EVPETWFTQLKEGGR 175 (322)
T ss_pred ------------------cCC-CcEEEEeCChhhcc-cccCCccEEEECCchH------------HhHHHHHHhcCCCCE
Confidence 222 34778888876532 2236799999865442 223456788999999
Q ss_pred EEEee
Q 047406 219 FVLEP 223 (290)
Q Consensus 219 l~i~~ 223 (290)
+++..
T Consensus 176 Lvv~~ 180 (322)
T PRK13943 176 VIVPI 180 (322)
T ss_pred EEEEe
Confidence 98853
No 139
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.91 E-value=1.1e-08 Score=92.19 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=87.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
...++|||||++.|.-++.||...+ +.+++.+|++++..+.|++++..
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~------------------------------- 106 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE------------------------------- 106 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence 5779999999999999999999988 66899999999999999999987
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEee-cccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQ-ENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.++.+.+.... +|..+.+. ...++||+|+. +.++..-...+..+.++|+|||
T Consensus 107 -----------------ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI---------DadK~~yp~~le~~~~lLr~GG 160 (219)
T COG4122 107 -----------------AGVDDRIELLLGGDALDVLSRLLDGSFDLVFI---------DADKADYPEYLERALPLLRPGG 160 (219)
T ss_pred -----------------cCCcceEEEEecCcHHHHHHhccCCCccEEEE---------eCChhhCHHHHHHHHHHhCCCc
Confidence 34445566666 57666433 34689999994 4456667899999999999999
Q ss_pred EEEEee
Q 047406 218 IFVLEP 223 (290)
Q Consensus 218 ~l~i~~ 223 (290)
++++..
T Consensus 161 liv~DN 166 (219)
T COG4122 161 LIVADN 166 (219)
T ss_pred EEEEee
Confidence 999953
No 140
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=2e-08 Score=98.88 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=83.2
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.+|.+|||+|||+|..+..+++.+++ ..|+++|+++.+++.++.++..
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r------------------------------- 299 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR------------------------------- 299 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-------------------------------
Confidence 57899999999999999999987653 5899999999999999998876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEch------hhhh-hhh--cCCch-------
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLS------VTKW-IHL--NWGDD------- 200 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~------vl~~-~~l--~~~~~------- 200 (290)
.++. ++.+...|..+... ...+.||.|++.. +++. -.. .+...
T Consensus 300 -----------------~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~ 361 (434)
T PRK14901 300 -----------------LGLK-SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAP 361 (434)
T ss_pred -----------------cCCC-eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHH
Confidence 2332 47788888765211 2246899999731 2110 000 01111
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 201 GLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 201 ~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.+.+++.+++++|+|||+++.++-
T Consensus 362 ~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 362 LQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeC
Confidence 257899999999999999998653
No 141
>PLN02476 O-methyltransferase
Probab=98.90 E-value=1.3e-08 Score=94.85 Aligned_cols=110 Identities=18% Similarity=0.306 Sum_probs=87.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
...++||||||++|..++.+|...+ ...|+++|.+++.++.|+.++..
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~------------------------------- 165 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL------------------------------- 165 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence 5678999999999999999988765 34799999999999999999887
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-----CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-----PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR 214 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk 214 (290)
.++.+.+.+..+|..+.++. ..++||+|+. +..+......++.+.++|+
T Consensus 166 -----------------aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFI---------Da~K~~Y~~y~e~~l~lL~ 219 (278)
T PLN02476 166 -----------------AGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFV---------DADKRMYQDYFELLLQLVR 219 (278)
T ss_pred -----------------cCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEE---------CCCHHHHHHHHHHHHHhcC
Confidence 44555788888887663321 1368999994 4445667889999999999
Q ss_pred CCcEEEEeeCCCc
Q 047406 215 PGGIFVLEPQPWV 227 (290)
Q Consensus 215 pgG~l~i~~~~~~ 227 (290)
|||++++..--|.
T Consensus 220 ~GGvIV~DNvL~~ 232 (278)
T PLN02476 220 VGGVIVMDNVLWH 232 (278)
T ss_pred CCcEEEEecCccC
Confidence 9999999655443
No 142
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.90 E-value=1.2e-08 Score=91.11 Aligned_cols=109 Identities=24% Similarity=0.371 Sum_probs=86.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
...++||||||++|.-++.+|...| ..+|+.+|++++..+.|+.++..
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~------------------------------- 92 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK------------------------------- 92 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH-------------------------------
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh-------------------------------
Confidence 5678999999999999999998776 46999999999999999999887
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-----CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-----SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR 214 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk 214 (290)
.++.++|++..+|..+.++ ...++||+|+. +..+......+..+.++|+
T Consensus 93 -----------------ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFi---------Da~K~~y~~y~~~~~~ll~ 146 (205)
T PF01596_consen 93 -----------------AGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFI---------DADKRNYLEYFEKALPLLR 146 (205)
T ss_dssp -----------------TTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEE---------ESTGGGHHHHHHHHHHHEE
T ss_pred -----------------cCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEE---------cccccchhhHHHHHhhhcc
Confidence 3444578899888865322 12368999994 4455667788999999999
Q ss_pred CCcEEEEeeCCC
Q 047406 215 PGGIFVLEPQPW 226 (290)
Q Consensus 215 pgG~l~i~~~~~ 226 (290)
|||++++..--|
T Consensus 147 ~ggvii~DN~l~ 158 (205)
T PF01596_consen 147 PGGVIIADNVLW 158 (205)
T ss_dssp EEEEEEEETTTG
T ss_pred CCeEEEEccccc
Confidence 999999965444
No 143
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.89 E-value=6.2e-09 Score=93.21 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=76.6
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.+|.+|||||||+|..+..++...+.. +|+++|+++..++.|+.++...+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---------------------------- 121 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---------------------------- 121 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----------------------------
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----------------------------
Confidence 5799999999999999999999876543 69999999999999999987621
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
+ .++.+..+|....++. ..+||.|++..... .+=..+.+.|++||+
T Consensus 122 --------------------~-~nv~~~~gdg~~g~~~-~apfD~I~v~~a~~------------~ip~~l~~qL~~gGr 167 (209)
T PF01135_consen 122 --------------------I-DNVEVVVGDGSEGWPE-EAPFDRIIVTAAVP------------EIPEALLEQLKPGGR 167 (209)
T ss_dssp --------------------T-HSEEEEES-GGGTTGG-G-SEEEEEESSBBS------------S--HHHHHTEEEEEE
T ss_pred --------------------c-CceeEEEcchhhcccc-CCCcCEEEEeeccc------------hHHHHHHHhcCCCcE
Confidence 1 2688999998775433 46899999976652 112457777899999
Q ss_pred EEEeeC
Q 047406 219 FVLEPQ 224 (290)
Q Consensus 219 l~i~~~ 224 (290)
|++-..
T Consensus 168 LV~pi~ 173 (209)
T PF01135_consen 168 LVAPIG 173 (209)
T ss_dssp EEEEES
T ss_pred EEEEEc
Confidence 999554
No 144
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.88 E-value=5.3e-08 Score=94.96 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=82.0
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
.+.++.+|||+|||+|.+++..+. .++.+|+++|+|+.+++.|++++..
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~------------------------------ 265 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVEL------------------------------ 265 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence 345789999999999999887554 3456999999999999999999876
Q ss_pred hhHHHHHHhhhcCCCccccCcC-cceeEeecccccCCC---CCCCceeEEEEchhhh---hhhhcCCchHHHHHHHHHHh
Q 047406 139 TAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRD---SPEKYYDAILCLSVTK---WIHLNWGDDGLITLFMRIWK 211 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~---~~~l~~~~~~~~~~l~~~~~ 211 (290)
+++. ..+++.++|..+.+. ...++||+|++..-.- --.+.-...+...++....+
T Consensus 266 ------------------Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~ 327 (396)
T PRK15128 266 ------------------NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQ 327 (396)
T ss_pred ------------------cCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3443 358899999876321 1245799999863320 00000011345677778899
Q ss_pred hcCCCcEEEEe
Q 047406 212 LLRPGGIFVLE 222 (290)
Q Consensus 212 ~LkpgG~l~i~ 222 (290)
+|+|||++++.
T Consensus 328 lLk~gG~lv~~ 338 (396)
T PRK15128 328 LLNPGGILLTF 338 (396)
T ss_pred HcCCCeEEEEE
Confidence 99999999973
No 145
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.87 E-value=1.1e-08 Score=88.58 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=74.7
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
....++.+|||+|||+|..++.++...+..+|+.+|.++ .++..+.|+....
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~--------------------------- 92 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNG--------------------------- 92 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------------------------
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcc---------------------------
Confidence 345788999999999999999988875677999999988 9999988876511
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC---CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR---DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR 214 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk 214 (290)
......+.+...|+-+.. .....+||+|++..++. ..+....+++.+.++|+
T Consensus 93 -------------------~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y------~~~~~~~L~~tl~~ll~ 147 (173)
T PF10294_consen 93 -------------------SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLY------DEELFEPLVRTLKRLLK 147 (173)
T ss_dssp --------------------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-------GGGHHHHHHHHHHHBT
T ss_pred -------------------ccccccccCcEEEecCcccccccccccCCEEEEecccc------hHHHHHHHHHHHHHHhC
Confidence 012335777777775521 01236899999999983 34677899999999999
Q ss_pred CCcEEEEee
Q 047406 215 PGGIFVLEP 223 (290)
Q Consensus 215 pgG~l~i~~ 223 (290)
|+|.+++..
T Consensus 148 ~~~~vl~~~ 156 (173)
T PF10294_consen 148 PNGKVLLAY 156 (173)
T ss_dssp T-TTEEEEE
T ss_pred CCCEEEEEe
Confidence 999977754
No 146
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.9e-08 Score=91.88 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=85.9
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.+|.+|+|+|+|||.++..||... +..+|+..|+.++.++.|++|+..+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~----------------------------- 142 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF----------------------------- 142 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----------------------------
Confidence 5789999999999999999999644 4469999999999999999999873
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
++.+.+.+...|..+.. .+..||+|+. +.+++...+..++++|+|||.
T Consensus 143 -------------------~l~d~v~~~~~Dv~~~~--~~~~vDav~L-----------Dmp~PW~~le~~~~~Lkpgg~ 190 (256)
T COG2519 143 -------------------GLGDRVTLKLGDVREGI--DEEDVDAVFL-----------DLPDPWNVLEHVSDALKPGGV 190 (256)
T ss_pred -------------------ccccceEEEeccccccc--cccccCEEEE-----------cCCChHHHHHHHHHHhCCCcE
Confidence 34445888888987742 2348999993 346788999999999999999
Q ss_pred EEEeeC
Q 047406 219 FVLEPQ 224 (290)
Q Consensus 219 l~i~~~ 224 (290)
+++-.+
T Consensus 191 ~~~y~P 196 (256)
T COG2519 191 VVVYSP 196 (256)
T ss_pred EEEEcC
Confidence 999655
No 147
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.84 E-value=2.7e-08 Score=91.91 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=79.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+.+||+||||+|..+..+++..+..+++++|+++.+++.|+.++....
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~------------------------------- 120 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA------------------------------- 120 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc-------------------------------
Confidence 4569999999999999888776545689999999999999998764310
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~l 219 (290)
..--..++.+...|....+....++||+|++.....+. .... ...+++.+.+.|+|||++
T Consensus 121 --------------~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~----~~~~l~~~ef~~~~~~~L~pgG~l 182 (270)
T TIGR00417 121 --------------GSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVG----PAETLFTKEFYELLKKALNEDGIF 182 (270)
T ss_pred --------------ccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCC----cccchhHHHHHHHHHHHhCCCcEE
Confidence 00001246666677655333335789999985432110 1112 367889999999999999
Q ss_pred EEee
Q 047406 220 VLEP 223 (290)
Q Consensus 220 ~i~~ 223 (290)
++..
T Consensus 183 v~~~ 186 (270)
T TIGR00417 183 VAQS 186 (270)
T ss_pred EEcC
Confidence 9963
No 148
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.84 E-value=2.7e-08 Score=88.47 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=76.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.+++.++.+. +.+|+++|+++.+++.++.++..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~-------------------------------- 98 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLAT-------------------------------- 98 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence 467899999999999998654443 46999999999999999998876
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCCCcE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRPGGI 218 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~LkpgG~ 218 (290)
.++ .++.+...|+.+.++....+||+|++..-.. ..-...++..+.. +|.|+++
T Consensus 99 ----------------~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~-------~g~~~~~l~~l~~~~~l~~~~i 154 (199)
T PRK10909 99 ----------------LKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR-------KGLLEETINLLEDNGWLADEAL 154 (199)
T ss_pred ----------------hCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC-------CChHHHHHHHHHHCCCcCCCcE
Confidence 222 2478888887664332345799999865421 1122344555544 4799999
Q ss_pred EEEeeC
Q 047406 219 FVLEPQ 224 (290)
Q Consensus 219 l~i~~~ 224 (290)
+++++.
T Consensus 155 v~ve~~ 160 (199)
T PRK10909 155 IYVESE 160 (199)
T ss_pred EEEEec
Confidence 999865
No 149
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.84 E-value=4.2e-08 Score=90.03 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=79.1
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
.+.+|.+|+|.|+|+|.++..|+... |..+|+..|+.++..+.|+++++.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~----------------------------- 87 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER----------------------------- 87 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-----------------------------
Confidence 45799999999999999999999654 456999999999999999999887
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-CC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc-C
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL-R 214 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L-k 214 (290)
.++.+++.+...|.... .+ ..+..+|.|+.- .+++...+..+.+.| +
T Consensus 88 -------------------~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLD-----------lp~Pw~~i~~~~~~L~~ 137 (247)
T PF08704_consen 88 -------------------HGLDDNVTVHHRDVCEEGFDEELESDFDAVFLD-----------LPDPWEAIPHAKRALKK 137 (247)
T ss_dssp -------------------TTCCTTEEEEES-GGCG--STT-TTSEEEEEEE-----------SSSGGGGHHHHHHHE-E
T ss_pred -------------------cCCCCCceeEecceecccccccccCcccEEEEe-----------CCCHHHHHHHHHHHHhc
Confidence 34556788999998642 21 123679999941 244556778899999 8
Q ss_pred CCcEEEEeeC
Q 047406 215 PGGIFVLEPQ 224 (290)
Q Consensus 215 pgG~l~i~~~ 224 (290)
|||.+++-.+
T Consensus 138 ~gG~i~~fsP 147 (247)
T PF08704_consen 138 PGGRICCFSP 147 (247)
T ss_dssp EEEEEEEEES
T ss_pred CCceEEEECC
Confidence 9999999655
No 150
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.82 E-value=2e-08 Score=94.80 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=75.9
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+|||+|||+|.++..+|.. ..+|+|+|+|+.+++.|++++..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~--------------------------------- 217 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAE--------------------------------- 217 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH---------------------------------
Confidence 5789999999999999999885 35899999999999999998765
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.++ .++.|.+.|+.+......+.||+|++..-- .++...+.+....+.|++++++
T Consensus 218 ---------------~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr---------~G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 218 ---------------LGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR---------RGIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred ---------------cCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC---------CCccHHHHHHHHHcCCCeEEEE
Confidence 334 358899999865322233579999986331 1222222233344789999999
Q ss_pred eeCC
Q 047406 222 EPQP 225 (290)
Q Consensus 222 ~~~~ 225 (290)
++.|
T Consensus 273 sc~p 276 (315)
T PRK03522 273 SCNA 276 (315)
T ss_pred ECCc
Confidence 8764
No 151
>PLN02366 spermidine synthase
Probab=98.82 E-value=3.5e-08 Score=93.27 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=83.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
+..++||+||||.|..+..+++..+..+|+.+|+++.+++.|++++....
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~------------------------------ 139 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLA------------------------------ 139 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhc------------------------------
Confidence 46789999999999999998876444689999999999999999765310
Q ss_pred HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCC
Q 047406 141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPG 216 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~Lkpg 216 (290)
..+ ..++.+...|....+.. +.++||+|++-..-.+. .... -..++..+.++|+||
T Consensus 140 ----------------~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~----~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 140 ----------------VGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVG----PAQELFEKPFFESVARALRPG 199 (308)
T ss_pred ----------------cccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCC----chhhhhHHHHHHHHHHhcCCC
Confidence 111 23688899997553222 35689999984322110 0111 257899999999999
Q ss_pred cEEEEeeC-CCch
Q 047406 217 GIFVLEPQ-PWVS 228 (290)
Q Consensus 217 G~l~i~~~-~~~~ 228 (290)
|+++.+.. +|..
T Consensus 200 Gvlv~q~~s~~~~ 212 (308)
T PLN02366 200 GVVCTQAESMWLH 212 (308)
T ss_pred cEEEECcCCcccc
Confidence 99988544 3543
No 152
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.79 E-value=3.6e-08 Score=84.57 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=72.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-------------------------------- 57 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-------------------------------- 57 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--------------------------------
Confidence 46789999999999999999887 45899999999999999876421
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
..++.+...|+.+ ++.+...||.|+++.-.+ ...+.+..++... .+.++|+++
T Consensus 58 -------------------~~~v~ii~~D~~~-~~~~~~~~d~vi~n~Py~-----~~~~~i~~~l~~~--~~~~~~~l~ 110 (169)
T smart00650 58 -------------------ADNLTVIHGDALK-FDLPKLQPYKVVGNLPYN-----ISTPILFKLLEEP--PAFRDAVLM 110 (169)
T ss_pred -------------------CCCEEEEECchhc-CCccccCCCEEEECCCcc-----cHHHHHHHHHhcC--CCcceEEEE
Confidence 1357888999877 344445699999864432 1123333443321 244888888
Q ss_pred Eee
Q 047406 221 LEP 223 (290)
Q Consensus 221 i~~ 223 (290)
++.
T Consensus 111 ~q~ 113 (169)
T smart00650 111 VQK 113 (169)
T ss_pred EEH
Confidence 863
No 153
>PRK03612 spermidine synthase; Provisional
Probab=98.77 E-value=4e-08 Score=98.90 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=79.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHH--HHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHL--RKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
+++++|||+|||+|..+..+++. +. .+|+++|+|+++++.++++. ....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~--------------------------- 347 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALN--------------------------- 347 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhh---------------------------
Confidence 45689999999999999988874 54 69999999999999999842 2100
Q ss_pred hhhHHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 138 VTAAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
...+ ..++++...|..+......++||+|++...-.+.. .-..---..+++.+.++|+||
T Consensus 348 ------------------~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~-~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 348 ------------------GGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNP-ALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred ------------------ccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCc-chhccchHHHHHHHHHhcCCC
Confidence 0011 23578888887764333457899999864321100 000001146889999999999
Q ss_pred cEEEEee
Q 047406 217 GIFVLEP 223 (290)
Q Consensus 217 G~l~i~~ 223 (290)
|+++++.
T Consensus 409 G~lv~~~ 415 (521)
T PRK03612 409 GLLVVQS 415 (521)
T ss_pred eEEEEec
Confidence 9999964
No 154
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.77 E-value=7e-08 Score=86.93 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=99.9
Q ss_pred hhhHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406 51 PRFKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI 128 (290)
Q Consensus 51 ~~l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (290)
|.|..+... ..++.+||..|||.|.-...||.+ +.+|+|+|+|+.+++.+.+.... .+.....
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~----------~~~~~~~--- 88 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNL----------EPTVTSV--- 88 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTT----------EEECTTC---
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhcc----------CCCcccc---
Confidence 445444333 456779999999999999999987 46999999999999998442110 0000000
Q ss_pred hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406 129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR 208 (290)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~ 208 (290)
......-..+|++.++|+.+..+...++||+|+=...+ +.+ ..+.-.+..++
T Consensus 89 ------------------------~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l--~Al--pp~~R~~Ya~~ 140 (218)
T PF05724_consen 89 ------------------------GGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFL--CAL--PPEMRERYAQQ 140 (218)
T ss_dssp ------------------------TTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSST--TTS---GGGHHHHHHH
T ss_pred ------------------------cceeeecCCceEEEEcccccCChhhcCCceEEEEeccc--ccC--CHHHHHHHHHH
Confidence 00000112468999999988433333689999988777 333 35566799999
Q ss_pred HHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 209 IWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 209 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+.++|+|||.+++... .|... ...-+...+.++++.+ ++. .+|++..+...
T Consensus 141 l~~ll~p~g~~lLi~l---~~~~~-------~~~GPPf~v~~~ev~~-l~~-~~f~i~~l~~~ 191 (218)
T PF05724_consen 141 LASLLKPGGRGLLITL---EYPQG-------EMEGPPFSVTEEEVRE-LFG-PGFEIEELEEE 191 (218)
T ss_dssp HHHCEEEEEEEEEEEE---ES-CS-------CSSSSS----HHHHHH-HHT-TTEEEEEEEEE
T ss_pred HHHHhCCCCcEEEEEE---EcCCc-------CCCCcCCCCCHHHHHH-Hhc-CCcEEEEEecc
Confidence 9999999999544321 01110 0111222345555555 566 89987766543
No 155
>PHA03412 putative methyltransferase; Provisional
Probab=98.75 E-value=7.4e-08 Score=87.76 Aligned_cols=103 Identities=10% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC---CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN---CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~---~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
.+.+|||+|||+|.++..++.+++ ..+|+++|+++.+++.|+.+..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------------------------------- 97 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------------------------------- 97 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------------------------------
Confidence 468999999999999999887643 4589999999999999987532
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh---hhhh---cCCchHHHHHHHHHHhh
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK---WIHL---NWGDDGLITLFMRIWKL 212 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~---~~~l---~~~~~~~~~~l~~~~~~ 212 (290)
.+.+...|+.+. + ..++||+|+|+.-.. .-+. .-+..-...++..+.++
T Consensus 98 -----------------------~~~~~~~D~~~~-~-~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L 152 (241)
T PHA03412 98 -----------------------EATWINADALTT-E-FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI 152 (241)
T ss_pred -----------------------CCEEEEcchhcc-c-ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH
Confidence 266778888652 2 246899999974321 0000 00122346788899886
Q ss_pred cCCCcEEEE
Q 047406 213 LRPGGIFVL 221 (290)
Q Consensus 213 LkpgG~l~i 221 (290)
+++|+ +++
T Consensus 153 l~~G~-~IL 160 (241)
T PHA03412 153 ARQGT-FII 160 (241)
T ss_pred cCCCE-EEe
Confidence 66655 455
No 156
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.74 E-value=3.8e-08 Score=92.66 Aligned_cols=124 Identities=18% Similarity=0.295 Sum_probs=87.6
Q ss_pred hhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcc
Q 047406 56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLE 135 (290)
Q Consensus 56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (290)
|.....++..++++|||-|.-.+-..+. +-..++|+||.+-+++.|+...+.+-..
T Consensus 111 I~~y~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r----------------------- 166 (389)
T KOG1975|consen 111 INLYTKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNR----------------------- 166 (389)
T ss_pred HHHHhccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhh-----------------------
Confidence 3344578899999999999877665543 3348999999999999999988763210
Q ss_pred hhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-----CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406 136 KNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW 210 (290)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~ 210 (290)
. ........|..+|.... ++..+.+||+|.|-+++||..- ..+..+.++.++.
T Consensus 167 -------~-------------~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe--tee~ar~~l~Nva 224 (389)
T KOG1975|consen 167 -------F-------------KKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE--TEESARIALRNVA 224 (389)
T ss_pred -------h-------------hcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeec--cHHHHHHHHHHHH
Confidence 0 01112356777775441 3223334999999999875421 4566689999999
Q ss_pred hhcCCCcEEEEeeCC
Q 047406 211 KLLRPGGIFVLEPQP 225 (290)
Q Consensus 211 ~~LkpgG~l~i~~~~ 225 (290)
++|+|||+++-..|+
T Consensus 225 ~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 225 KCLKPGGVFIGTIPD 239 (389)
T ss_pred hhcCCCcEEEEecCc
Confidence 999999999997654
No 157
>PRK01581 speE spermidine synthase; Validated
Probab=98.72 E-value=1.3e-07 Score=91.15 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=79.7
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
....+||+||||+|..+..+++..+..+|+++|+|+.+++.|+...... ...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~-----------------~~~----------- 200 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELV-----------------SLN----------- 200 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccc-----------------hhc-----------
Confidence 4568999999999998888777544569999999999999999621110 000
Q ss_pred HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
...+ ..++.+...|..+.+....+.||+|++-..-..... ...---..++..+.+.|+|||++
T Consensus 201 ---------------~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~-~~~LyT~EFy~~~~~~LkPgGV~ 264 (374)
T PRK01581 201 ---------------KSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATEL-LSTLYTSELFARIATFLTEDGAF 264 (374)
T ss_pred ---------------cccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccc-hhhhhHHHHHHHHHHhcCCCcEE
Confidence 0011 236888888887644445578999998521100000 00001157889999999999999
Q ss_pred EEee
Q 047406 220 VLEP 223 (290)
Q Consensus 220 ~i~~ 223 (290)
++..
T Consensus 265 V~Qs 268 (374)
T PRK01581 265 VCQS 268 (374)
T ss_pred EEec
Confidence 9864
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.72 E-value=5.6e-08 Score=92.36 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=42.7
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+.++||||||+|.+...++...+.++++|+|+|+.+++.|+.++..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 45799999999999888888887788999999999999999999876
No 159
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.71 E-value=2.3e-07 Score=89.79 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=75.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||++||+|.+++.++.. ..+|+|+|+|+.+++.|+.++..
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~-------------------------------- 277 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQM-------------------------------- 277 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHH--------------------------------
Confidence 35689999999999999998864 46899999999999999998865
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH-HHHHHHHHhhcCCCcEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL-ITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~-~~~l~~~~~~LkpgG~l 219 (290)
.++ .++.|...|+.+........||+|++..-- .++ ..++..+. .++|++++
T Consensus 278 ----------------~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr---------~G~~~~~l~~l~-~~~p~~iv 330 (374)
T TIGR02085 278 ----------------LGL-DNLSFAALDSAKFATAQMSAPELVLVNPPR---------RGIGKELCDYLS-QMAPKFIL 330 (374)
T ss_pred ----------------cCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCC---------CCCcHHHHHHHH-hcCCCeEE
Confidence 333 258899999865322122459999975332 111 34444443 47999999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
++++.
T Consensus 331 yvsc~ 335 (374)
T TIGR02085 331 YSSCN 335 (374)
T ss_pred EEEeC
Confidence 99865
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.70 E-value=2.4e-07 Score=88.27 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=103.6
Q ss_pred CCchhhHHh---hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhch
Q 047406 48 NEDPRFKVL---KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASR 124 (290)
Q Consensus 48 ~~~~~l~~l---~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 124 (290)
..+|++.-. .+...+|..+||--||||.+.+.. ..++ .+++|+|++..+++-|+.|+..
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEa-gl~G-~~viG~Did~~mv~gak~Nl~~---------------- 241 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEA-GLMG-ARVIGSDIDERMVRGAKINLEY---------------- 241 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhh-hhcC-ceEeecchHHHHHhhhhhhhhh----------------
Confidence 334555433 344578999999999999999984 4444 5899999999999999999876
Q ss_pred hhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeec-ccccCCCCCCCceeEEEEchh------hhhhhhcC
Q 047406 125 VEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQE-NFVHGRDSPEKYYDAILCLSV------TKWIHLNW 197 (290)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~fD~I~~~~v------l~~~~l~~ 197 (290)
.++. ...+... |... +|.+...+|.|+|-.- .+-..+
T Consensus 242 --------------------------------y~i~-~~~~~~~~Da~~-lpl~~~~vdaIatDPPYGrst~~~~~~l-- 285 (347)
T COG1041 242 --------------------------------YGIE-DYPVLKVLDATN-LPLRDNSVDAIATDPPYGRSTKIKGEGL-- 285 (347)
T ss_pred --------------------------------hCcC-ceeEEEeccccc-CCCCCCccceEEecCCCCcccccccccH--
Confidence 1111 2323333 6655 5666667999999211 100000
Q ss_pred CchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCC
Q 047406 198 GDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSS 277 (290)
Q Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~ 277 (290)
++-..++|+.+.++|++||++++..+ ..... .+...||.++..+... .+
T Consensus 286 -~~Ly~~~le~~~evLk~gG~~vf~~p--------------------------~~~~~-~~~~~~f~v~~~~~~~-~H-- 334 (347)
T COG1041 286 -DELYEEALESASEVLKPGGRIVFAAP--------------------------RDPRH-ELEELGFKVLGRFTMR-VH-- 334 (347)
T ss_pred -HHHHHHHHHHHHHHhhcCcEEEEecC--------------------------Ccchh-hHhhcCceEEEEEEEe-ec--
Confidence 13357899999999999999999532 11112 4667999999888773 12
Q ss_pred CCCCCcceeeecC
Q 047406 278 KTGFNRPIFLFRK 290 (290)
Q Consensus 278 ~~~~~~~~~~~~k 290 (290)
....|.|.++++
T Consensus 335 -~sLtR~i~v~~~ 346 (347)
T COG1041 335 -GSLTRVIYVVRK 346 (347)
T ss_pred -CceEEEEEEEec
Confidence 223456666553
No 161
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.70 E-value=1.6e-07 Score=92.19 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=75.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|||+|.+++.+|.. ..+|+|+|+|+.+++.|+.++..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~-------------------------------- 336 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAEL-------------------------------- 336 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHH--------------------------------
Confidence 45689999999999999999886 34899999999999999998765
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchH-HHHHHHHHHhhcCCC
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDG-LITLFMRIWKLLRPG 216 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~-~~~~l~~~~~~Lkpg 216 (290)
.++ .++.|...|+.+.++ .....||+|++..-- .+ ...+++.+. .++|+
T Consensus 337 ----------------~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr---------~G~~~~~l~~l~-~l~~~ 389 (431)
T TIGR00479 337 ----------------NGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR---------KGCAAEVLRTII-ELKPE 389 (431)
T ss_pred ----------------hCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC---------CCCCHHHHHHHH-hcCCC
Confidence 222 358899999765221 223579999964321 12 234455544 48899
Q ss_pred cEEEEeeC
Q 047406 217 GIFVLEPQ 224 (290)
Q Consensus 217 G~l~i~~~ 224 (290)
+++++++.
T Consensus 390 ~ivyvsc~ 397 (431)
T TIGR00479 390 RIVYVSCN 397 (431)
T ss_pred EEEEEcCC
Confidence 99999754
No 162
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.69 E-value=1.1e-07 Score=84.18 Aligned_cols=112 Identities=24% Similarity=0.311 Sum_probs=80.1
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
..+||||||.|.+.+.+|+.+|...++|+|++...+..+...+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~----------------------------------- 63 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK----------------------------------- 63 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-----------------------------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-----------------------------------
Confidence 389999999999999999999999999999999999999887765
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCcEE
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG~l 219 (290)
.++ .++.+.+.|....+ -.+++++|.|+..+-=-|..-...+. -...++..+.++|+|||.+
T Consensus 64 -------------~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 64 -------------RGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp -------------HTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred -------------hcc-cceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 222 46888988876621 12458899999865543331100000 1158899999999999999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
.+.+.
T Consensus 130 ~~~TD 134 (195)
T PF02390_consen 130 YFATD 134 (195)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99754
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.68 E-value=1.4e-07 Score=86.60 Aligned_cols=110 Identities=19% Similarity=0.325 Sum_probs=86.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
...++|||||++.|.-++.+|...+ ..+|+.+|++++..+.|+.++..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~------------------------------- 126 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK------------------------------- 126 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence 3567999999999999999887764 45899999999999999999876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC------CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhc
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLL 213 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~L 213 (290)
.++.+.|++..++..+.++. ..++||+|+. +.++..-...+..+.++|
T Consensus 127 -----------------ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFi---------DadK~~Y~~y~~~~l~ll 180 (247)
T PLN02589 127 -----------------AGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFV---------DADKDNYINYHKRLIDLV 180 (247)
T ss_pred -----------------CCCCCceEEEeccHHHHHHHHHhccccCCcccEEEe---------cCCHHHhHHHHHHHHHhc
Confidence 44556788988887764322 1368999995 334556678888999999
Q ss_pred CCCcEEEEeeCCCc
Q 047406 214 RPGGIFVLEPQPWV 227 (290)
Q Consensus 214 kpgG~l~i~~~~~~ 227 (290)
+|||++++..--|.
T Consensus 181 ~~GGviv~DNvl~~ 194 (247)
T PLN02589 181 KVGGVIGYDNTLWN 194 (247)
T ss_pred CCCeEEEEcCCCCC
Confidence 99999999655454
No 164
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.67 E-value=1.7e-07 Score=82.56 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=76.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..+.++||++||+|.+++.++.+ ++.+|+++|.++.+++.+++++..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~-------------------------------- 94 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLAL-------------------------------- 94 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 47899999999999999998876 445899999999999999999876
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHh--hcCC
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWK--LLRP 215 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~--~Lkp 215 (290)
.++..++.+...|....+. .....||+|+.-.- +.......++..+.+ +|++
T Consensus 95 ----------------~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP-------y~~~~~~~~l~~l~~~~~l~~ 151 (189)
T TIGR00095 95 ----------------LKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP-------FFNGALQALLELCENNWILED 151 (189)
T ss_pred ----------------hCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC-------CCCCcHHHHHHHHHHCCCCCC
Confidence 2233357778888754221 11234788886322 222333455555543 6899
Q ss_pred CcEEEEeeC
Q 047406 216 GGIFVLEPQ 224 (290)
Q Consensus 216 gG~l~i~~~ 224 (290)
+|++++++.
T Consensus 152 ~~iiv~E~~ 160 (189)
T TIGR00095 152 TVLIVVEED 160 (189)
T ss_pred CeEEEEEec
Confidence 999999765
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.66 E-value=2.9e-07 Score=83.47 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=83.6
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
++.+||+.|||.|..+..||.. +.+|+|+|+|+.+++.+.+.... .++ +...+..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~-------~~~--------~~~~~~~-------- 97 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTI-------NYE--------VIHGNDY-------- 97 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCC-------Ccc--------eeccccc--------
Confidence 5689999999999999999986 55899999999999988552110 000 0000000
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCC--CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD--SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
...-...+++.++|+.+..+ ...+.||+|+=...+ +++ ..+.-.+.+..+.++|+|||.+
T Consensus 98 --------------~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~--~Al--pp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 98 --------------KLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAY--IAL--PNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred --------------ceeccCceEEEEccCcCCCccccccCCcCeeeeehhH--hcC--CHHHHHHHHHHHHHHhCCCcEE
Confidence 00012358999999988422 223689999998888 444 3455579999999999999999
Q ss_pred EEee
Q 047406 220 VLEP 223 (290)
Q Consensus 220 ~i~~ 223 (290)
++..
T Consensus 160 lll~ 163 (226)
T PRK13256 160 LLLV 163 (226)
T ss_pred EEEE
Confidence 8853
No 166
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.63 E-value=3.9e-07 Score=88.64 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=84.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..|++||++-|-||.+++..|. .++.+|+++|+|..++++|++|+..
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~L-------------------------------- 262 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAEL-------------------------------- 262 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHh--------------------------------
Confidence 3499999999999999998655 4666999999999999999999987
Q ss_pred HHHHHHhhhcCCCccccCcC-cceeEeecccccCCCC---CCCceeEEEEchhhhhhhh-----cCCchHHHHHHHHHHh
Q 047406 141 AQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIHL-----NWGDDGLITLFMRIWK 211 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l-----~~~~~~~~~~l~~~~~ 211 (290)
+++. ..+.+++.|..+.+.. ...+||+|+.-.-. +.- .-...+...++..+.+
T Consensus 263 ----------------Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPs--F~r~k~~~~~~~rdy~~l~~~~~~ 324 (393)
T COG1092 263 ----------------NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPS--FARSKKQEFSAQRDYKDLNDLALR 324 (393)
T ss_pred ----------------cCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcc--cccCcccchhHHHHHHHHHHHHHH
Confidence 4443 4578999998774322 33589999983111 000 0012455789999999
Q ss_pred hcCCCcEEEEee
Q 047406 212 LLRPGGIFVLEP 223 (290)
Q Consensus 212 ~LkpgG~l~i~~ 223 (290)
+|+|||++++..
T Consensus 325 iL~pgG~l~~~s 336 (393)
T COG1092 325 LLAPGGTLVTSS 336 (393)
T ss_pred HcCCCCEEEEEe
Confidence 999999999964
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.61 E-value=9.8e-07 Score=76.99 Aligned_cols=116 Identities=24% Similarity=0.283 Sum_probs=75.6
Q ss_pred hhhccCCCcEEEecCCCChhhHHHHhHcCCce---------EEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhh
Q 047406 57 KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRS---------ILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEV 127 (290)
Q Consensus 57 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~---------i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (290)
...+.++..+||.-||+|.+.+..+....... ++|+|+++.+++.|+.|+..
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~------------------- 83 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA------------------- 83 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH-------------------
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh-------------------
Confidence 34567889999999999999988777665545 89999999999999999876
Q ss_pred hhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhh-hhhhcCC-chHHHHH
Q 047406 128 IEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTK-WIHLNWG-DDGLITL 205 (290)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~-~~~l~~~-~~~~~~~ 205 (290)
.++...+.+.+.|+.+ ++...+.+|.|+|..-.- .+..... ..-...+
T Consensus 84 -----------------------------ag~~~~i~~~~~D~~~-l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~ 133 (179)
T PF01170_consen 84 -----------------------------AGVEDYIDFIQWDARE-LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQF 133 (179)
T ss_dssp -----------------------------TT-CGGEEEEE--GGG-GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHH
T ss_pred -----------------------------cccCCceEEEecchhh-cccccCCCCEEEECcchhhhccCHHHHHHHHHHH
Confidence 3344568899999877 444567999999952210 0000000 0112567
Q ss_pred HHHHHhhcCCCcEEEE
Q 047406 206 FMRIWKLLRPGGIFVL 221 (290)
Q Consensus 206 l~~~~~~LkpgG~l~i 221 (290)
++++.+++++..++++
T Consensus 134 ~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 134 LRELKRVLKPRAVFLT 149 (179)
T ss_dssp HHHHHCHSTTCEEEEE
T ss_pred HHHHHHHCCCCEEEEE
Confidence 8888888999444444
No 168
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=9.6e-07 Score=77.31 Aligned_cols=134 Identities=22% Similarity=0.368 Sum_probs=94.8
Q ss_pred CCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
..-|+|||||+|.++..+++... ..-..++|++|.+++..+..++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------------------------------- 91 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------------------------------- 91 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc--------------------------------
Confidence 57899999999999999988765 345779999999999988887652
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch----------hhhhhhhcC-----CchHHHHHH
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS----------VTKWIHLNW-----GDDGLITLF 206 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~----------vl~~~~l~~-----~~~~~~~~l 206 (290)
.. .++..+.|+...+. .++.|+++.+. ..+|+...| |.+-..+++
T Consensus 92 ----------------~~--~~~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll 151 (209)
T KOG3191|consen 92 ----------------RV--HIDVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLL 151 (209)
T ss_pred ----------------CC--ccceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHH
Confidence 11 36677777766432 26778777641 123555555 344457899
Q ss_pred HHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 207 MRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 207 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
.++-.+|+|.|.+++..- . .-.+++... .+++-||.......
T Consensus 152 ~~v~~iLSp~Gv~Ylv~~---------------~------~N~p~ei~k-~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 152 PQVPDILSPRGVFYLVAL---------------R------ANKPKEILK-ILEKKGYGVRIAMQ 193 (209)
T ss_pred hhhhhhcCcCceEEeeeh---------------h------hcCHHHHHH-HHhhcccceeEEEE
Confidence 999999999999999532 0 123455666 67888888665544
No 169
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.60 E-value=2.6e-07 Score=87.84 Aligned_cols=110 Identities=21% Similarity=0.332 Sum_probs=79.3
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
+.++++++|||+|||+|++++..|+. +..+|+++|-|.-+ +.|.+.+..
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~----------------------------- 104 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKD----------------------------- 104 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHh-----------------------------
Confidence 34689999999999999999987765 57799999987644 888776655
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
+++.+.+++.++...+- ..|....|+|+|-+.-.|+-. ..-+..++-.=-+.|+|||
T Consensus 105 -------------------N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy~Ll~---EsMldsVl~ARdkwL~~~G 161 (346)
T KOG1499|consen 105 -------------------NGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGYFLLY---ESMLDSVLYARDKWLKEGG 161 (346)
T ss_pred -------------------cCccceEEEeecceEEE-ecCccceeEEeehhhhHHHHH---hhhhhhhhhhhhhccCCCc
Confidence 66667788888887662 345688999999555443321 1223444444456799999
Q ss_pred EEEE
Q 047406 218 IFVL 221 (290)
Q Consensus 218 ~l~i 221 (290)
.++=
T Consensus 162 ~i~P 165 (346)
T KOG1499|consen 162 LIYP 165 (346)
T ss_pred eEcc
Confidence 8764
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.1e-07 Score=81.90 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=60.4
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
...|.+|+|+|||+|++++..+. +++..|+|+|+|+++++.++.|...
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~------------------------------- 90 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEE------------------------------- 90 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHh-------------------------------
Confidence 35788999999999999998655 5667999999999999999998764
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEch
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLS 188 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~ 188 (290)
+..++.|...|..+ ..+++|.++++.
T Consensus 91 -------------------l~g~v~f~~~dv~~----~~~~~dtvimNP 116 (198)
T COG2263 91 -------------------LLGDVEFVVADVSD----FRGKFDTVIMNP 116 (198)
T ss_pred -------------------hCCceEEEEcchhh----cCCccceEEECC
Confidence 33468999999866 346788888753
No 171
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.53 E-value=4.6e-07 Score=80.73 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=74.3
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
....++.+|+|+.||.|.+++.+|+...+..|+++|++|.+++..+.+++.
T Consensus 97 ~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l----------------------------- 147 (200)
T PF02475_consen 97 NLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL----------------------------- 147 (200)
T ss_dssp TC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH-----------------------------
T ss_pred hcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH-----------------------------
Confidence 345789999999999999999999865677899999999999999999887
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
+.+...+....+|..+..+ ...+|.|++...- ....++..+..++++||
T Consensus 148 -------------------Nkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~----------~~~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 148 -------------------NKVENRIEVINGDAREFLP--EGKFDRVIMNLPE----------SSLEFLDAALSLLKEGG 196 (200)
T ss_dssp -------------------TT-TTTEEEEES-GGG-----TT-EEEEEE--TS----------SGGGGHHHHHHHEEEEE
T ss_pred -------------------cCCCCeEEEEcCCHHHhcC--ccccCEEEECChH----------HHHHHHHHHHHHhcCCc
Confidence 5566678899999887533 6889999975331 22356778999999999
Q ss_pred EEE
Q 047406 218 IFV 220 (290)
Q Consensus 218 ~l~ 220 (290)
++-
T Consensus 197 ~ih 199 (200)
T PF02475_consen 197 IIH 199 (200)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 172
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.52 E-value=7.6e-07 Score=80.79 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=85.1
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
..+||||||.|.+.+.+|+..|...++|+|+....+..|.+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~----------------------------------- 94 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE----------------------------------- 94 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----------------------------------
Confidence 589999999999999999999999999999999999999987765
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCch--HHHHHHHHHHhhcCCCcEE
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDD--GLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~--~~~~~l~~~~~~LkpgG~l 219 (290)
.++. ++.+.+.|....+ -.++++.|-|+.++-=-|.---..+. ....++..+.+.|+|||.|
T Consensus 95 -------------~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l 160 (227)
T COG0220 95 -------------LGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVL 160 (227)
T ss_pred -------------cCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEE
Confidence 3343 6888888876632 23456899999765543321000000 1258899999999999999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
.+.+.
T Consensus 161 ~~aTD 165 (227)
T COG0220 161 HFATD 165 (227)
T ss_pred EEEec
Confidence 99764
No 173
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.51 E-value=2.6e-07 Score=81.09 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=76.2
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.+|.++||+-||||.+++..+.+ ++.+|+.+|.|+.++...++|+....
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~------------------------------ 89 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLG------------------------------ 89 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT------------------------------
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhC------------------------------
Confidence 58999999999999999996665 56799999999999999999998732
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC---CCCCceeEEEEchhhhhhhhcCCchH-HHHHHHHHH--hhcC
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD---SPEKYYDAILCLSVTKWIHLNWGDDG-LITLFMRIW--KLLR 214 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~fD~I~~~~vl~~~~l~~~~~~-~~~~l~~~~--~~Lk 214 (290)
..+.+.....|....+. ....+||+|+.-. ++.... ...++..+. .+|+
T Consensus 90 ------------------~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP-------PY~~~~~~~~~l~~l~~~~~l~ 144 (183)
T PF03602_consen 90 ------------------LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP-------PYAKGLYYEELLELLAENNLLN 144 (183)
T ss_dssp -------------------GGGEEEEESSHHHHHHHHHHCTS-EEEEEE---------STTSCHHHHHHHHHHHHTTSEE
T ss_pred ------------------CCcceeeeccCHHHHHHhhcccCCCceEEEECC-------CcccchHHHHHHHHHHHCCCCC
Confidence 22346677777544221 1357899999642 233344 367777777 7899
Q ss_pred CCcEEEEeeC
Q 047406 215 PGGIFVLEPQ 224 (290)
Q Consensus 215 pgG~l~i~~~ 224 (290)
++|++++++.
T Consensus 145 ~~~~ii~E~~ 154 (183)
T PF03602_consen 145 EDGLIIIEHS 154 (183)
T ss_dssp EEEEEEEEEE
T ss_pred CCEEEEEEec
Confidence 9999999864
No 174
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.50 E-value=6.8e-07 Score=85.04 Aligned_cols=144 Identities=23% Similarity=0.239 Sum_probs=98.9
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
...+|+|.|.|.++..+..+||. |-+++.+..-+-.+..++.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~------------------------------------ 220 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA------------------------------------ 220 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc------------------------------------
Confidence 68999999999999999998874 6677776666555544321
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
..+++.-+|+.+..|. -|+|++-+++| +|++++...+|++|+..|+|+|.+++..
T Consensus 221 -----------------~gV~~v~gdmfq~~P~----~daI~mkWiLh----dwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 221 -----------------PGVEHVAGDMFQDTPK----GDAIWMKWILH----DWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred -----------------CCcceecccccccCCC----cCeEEEEeecc----cCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 1377888888876433 36999877775 6789999999999999999999999954
Q ss_pred CCCchhhhhh-------h-hhhhhhccc-cccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 224 QPWVSYEKNR-------R-VSETTATNF-QNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 224 ~~~~~~~~~~-------~-~~~~~~~~~-~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.....-.... . ......... .+...+..+|+. ++.++||....+...
T Consensus 276 ~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~-l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 276 NVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQA-LLPEEGFPVCMVALT 331 (342)
T ss_pred ccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHh-cchhhcCceeEEEec
Confidence 4222100000 0 000111111 133456677777 899999998887665
No 175
>PLN02823 spermine synthase
Probab=98.50 E-value=7.5e-07 Score=85.22 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=80.9
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
+..++||.||+|.|..+..+++..+..+|+++|+++.+++.|+.++...
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~------------------------------- 150 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVN------------------------------- 150 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccc-------------------------------
Confidence 3557999999999999998887655668999999999999999875320
Q ss_pred HHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCC-chH--HHHHHH-HHHhhcCC
Q 047406 141 AQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWG-DDG--LITLFM-RIWKLLRP 215 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~-~~~--~~~~l~-~~~~~Lkp 215 (290)
...+ ..++.+...|.+..+....++||+|++-..-.+ ..+ ... -..+++ .+.+.|+|
T Consensus 151 ---------------~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~---~~~~~~~Lyt~eF~~~~~~~~L~p 212 (336)
T PLN02823 151 ---------------REAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPV---EGGPCYQLYTKSFYERIVKPKLNP 212 (336)
T ss_pred ---------------cccccCCceEEEEChhHHHHhhCCCCccEEEecCCCcc---ccCcchhhccHHHHHHHHHHhcCC
Confidence 0011 246888888877754445678999997421000 000 011 146777 78999999
Q ss_pred CcEEEEeeC
Q 047406 216 GGIFVLEPQ 224 (290)
Q Consensus 216 gG~l~i~~~ 224 (290)
||++++...
T Consensus 213 ~Gvlv~q~~ 221 (336)
T PLN02823 213 GGIFVTQAG 221 (336)
T ss_pred CcEEEEecc
Confidence 999998654
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.48 E-value=6.3e-07 Score=88.78 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=73.8
Q ss_pred CCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 63 GKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+..|+|||||+|.+....++.. ...+|+++|-++.++...+..+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~------------------------------ 236 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA------------------------------ 236 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH------------------------------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh------------------------------
Confidence 4689999999999977655432 245999999999988777665444
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
+++.+.|++..+|+.+ ...| .+.|+|+| .|+...+..+-...+|....+.|+|||+
T Consensus 237 ------------------n~w~~~V~vi~~d~r~-v~lp-ekvDIIVS----ElLGsfg~nEl~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 237 ------------------NGWGDKVTVIHGDMRE-VELP-EKVDIIVS----ELLGSFGDNELSPECLDAADRFLKPDGI 292 (448)
T ss_dssp ------------------TTTTTTEEEEES-TTT-SCHS-S-EEEEEE-------BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred ------------------cCCCCeEEEEeCcccC-CCCC-CceeEEEE----eccCCccccccCHHHHHHHHhhcCCCCE
Confidence 5666789999999987 3333 58999998 3333223345567788899999999988
Q ss_pred EEE
Q 047406 219 FVL 221 (290)
Q Consensus 219 l~i 221 (290)
++=
T Consensus 293 ~IP 295 (448)
T PF05185_consen 293 MIP 295 (448)
T ss_dssp EES
T ss_pred EeC
Confidence 763
No 177
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.42 E-value=2.3e-06 Score=77.66 Aligned_cols=40 Identities=30% Similarity=0.502 Sum_probs=35.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVAD 101 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~ 101 (290)
.++.+|||+|||+|.++..+++. +..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 47789999999999999999886 56689999999988866
No 178
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.40 E-value=8.1e-08 Score=95.00 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=40.3
Q ss_pred cCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCc
Q 047406 172 HGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWV 227 (290)
Q Consensus 172 ~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 227 (290)
..+|+|+..||+|.|..++ +.|...+ .-+|-++.|+|+|||+++++.+|-.
T Consensus 173 ~rLPfp~~~fDmvHcsrc~----i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCL----IPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccCCccchhhhhccccc----ccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence 3478899999999998887 3453433 3588899999999999999887643
No 179
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.8e-06 Score=77.20 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=86.4
Q ss_pred hhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCc--eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhh
Q 047406 52 RFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCR--SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIE 129 (290)
Q Consensus 52 ~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~--~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (290)
.++.|...+.+|...||+|+|+|.++..++....+. ...|+|.-++.++.+++++.....+ .+-..+.
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~----~e~~~~~------ 141 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT----SESSSKL------ 141 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC----chhhhhh------
Confidence 366777778899999999999999999888655433 3399999999999999999873211 0000000
Q ss_pred ccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406 130 KGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRI 209 (290)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~ 209 (290)
-...+.+..+|.+.. .....+||.|+|-... ..+.+++
T Consensus 142 -----------------------------~~~~l~ivvGDgr~g-~~e~a~YDaIhvGAaa------------~~~pq~l 179 (237)
T KOG1661|consen 142 -----------------------------KRGELSIVVGDGRKG-YAEQAPYDAIHVGAAA------------SELPQEL 179 (237)
T ss_pred -----------------------------ccCceEEEeCCcccc-CCccCCcceEEEccCc------------cccHHHH
Confidence 012467778888774 3345899999986443 3445667
Q ss_pred HhhcCCCcEEEEeeC
Q 047406 210 WKLLRPGGIFVLEPQ 224 (290)
Q Consensus 210 ~~~LkpgG~l~i~~~ 224 (290)
...|+|||.+++-..
T Consensus 180 ~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 180 LDQLKPGGRLLIPVG 194 (237)
T ss_pred HHhhccCCeEEEeec
Confidence 778899999999543
No 180
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.37 E-value=1.4e-06 Score=81.53 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=78.6
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
...|++|||+-|=+|.+++..+ ..++.+|+++|.|..++++++.|+..
T Consensus 121 ~~~gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~~N~~l------------------------------- 168 (286)
T PF10672_consen 121 YAKGKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAKENAAL------------------------------- 168 (286)
T ss_dssp HCTTCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHHHHHHH-------------------------------
T ss_pred HcCCCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------
Confidence 3678999999999999999854 45666899999999999999999887
Q ss_pred hHHHHHHhhhcCCCccccCcC-cceeEeecccccCCCC--CCCceeEEEEchhh---hhhhhcCCchHHHHHHHHHHhhc
Q 047406 140 AAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGRDS--PEKYYDAILCLSVT---KWIHLNWGDDGLITLFMRIWKLL 213 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~~~--~~~~fD~I~~~~vl---~~~~l~~~~~~~~~~l~~~~~~L 213 (290)
+++. +.+.|.+.|..+.+.. ..++||+|++-.-. .-..+ ..+...++..+.++|
T Consensus 169 -----------------Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~---~~~y~~L~~~a~~ll 228 (286)
T PF10672_consen 169 -----------------NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDL---ERDYKKLLRRAMKLL 228 (286)
T ss_dssp -----------------TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEH---HHHHHHHHHHHHHTE
T ss_pred -----------------cCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHH---HHHHHHHHHHHHHhc
Confidence 4443 4688999998663211 23689999993111 00001 145578899999999
Q ss_pred CCCcEEEEe
Q 047406 214 RPGGIFVLE 222 (290)
Q Consensus 214 kpgG~l~i~ 222 (290)
+|||+|++.
T Consensus 229 ~~gG~l~~~ 237 (286)
T PF10672_consen 229 KPGGLLLTC 237 (286)
T ss_dssp EEEEEEEEE
T ss_pred CCCCEEEEE
Confidence 999998874
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.36 E-value=3.4e-06 Score=79.25 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=49.2
Q ss_pred cccCCCCCchh-hHHhhh--hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 42 RIGQGLNEDPR-FKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 42 ~~~~~~~~~~~-l~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.++|+...++. ++.+.. ...++.+|||||||+|.++..+++. +.+++++|+|+.+++.+++++..
T Consensus 13 ~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 13 KFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred CCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHh
Confidence 44556655544 333332 2357789999999999999999886 45899999999999999987654
No 182
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.31 E-value=6.9e-06 Score=72.28 Aligned_cols=100 Identities=22% Similarity=0.211 Sum_probs=79.7
Q ss_pred cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHH
Q 047406 65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEE 144 (290)
Q Consensus 65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (290)
+++|||+|.|-.++-+|-.+|..+++.+|.....+...+.-+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~------------------------------------ 94 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE------------------------------------ 94 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH------------------------------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH------------------------------------
Confidence 89999999999999999999999999999999988888776655
Q ss_pred HHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 145 KKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.++. ++.+.+....+ ......||+|+++.+. .+..++.-+..++++||.+++--+
T Consensus 95 ------------L~L~-nv~v~~~R~E~--~~~~~~fd~v~aRAv~----------~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 95 ------------LGLS-NVEVINGRAEE--PEYRESFDVVTARAVA----------PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp ------------HT-S-SEEEEES-HHH--TTTTT-EEEEEEESSS----------SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ------------hCCC-CEEEEEeeecc--cccCCCccEEEeehhc----------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3443 57788877766 3456899999999885 456788889999999999999655
Q ss_pred C
Q 047406 225 P 225 (290)
Q Consensus 225 ~ 225 (290)
+
T Consensus 150 ~ 150 (184)
T PF02527_consen 150 P 150 (184)
T ss_dssp S
T ss_pred C
Confidence 3
No 183
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.30 E-value=5.9e-06 Score=79.71 Aligned_cols=44 Identities=30% Similarity=0.566 Sum_probs=39.2
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
+.++||++||+|.+++.++... .+|+|+|+|+.+++.|+.|+..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHH
Confidence 3579999999999999888763 4899999999999999998876
No 184
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.30 E-value=1.2e-05 Score=80.27 Aligned_cols=118 Identities=20% Similarity=0.211 Sum_probs=82.5
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
..+|.+|||+++++|.=+..+|+.++. ..|++.|+++..++....++...
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~----------------------------- 161 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC----------------------------- 161 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc-----------------------------
Confidence 358899999999999999999998754 48999999999999999998773
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEE----chh--hhh---hhhcCCc-------hHH
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC----LSV--TKW---IHLNWGD-------DGL 202 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~----~~v--l~~---~~l~~~~-------~~~ 202 (290)
++ .++.+...|...........||.|++ +.. +.. .-..|.. .-+
T Consensus 162 -------------------G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ 221 (470)
T PRK11933 162 -------------------GV-SNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQ 221 (470)
T ss_pred -------------------CC-CeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHH
Confidence 22 23555666654311122357999994 311 100 0001222 234
Q ss_pred HHHHHHHHhhcCCCcEEEEeeCCC
Q 047406 203 ITLFMRIWKLLRPGGIFVLEPQPW 226 (290)
Q Consensus 203 ~~~l~~~~~~LkpgG~l~i~~~~~ 226 (290)
.++|...+++|+|||+|+.++-..
T Consensus 222 ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 222 RELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEECCCC
Confidence 799999999999999999876543
No 185
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.30 E-value=4.8e-06 Score=74.77 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=62.9
Q ss_pred eEeecccccCCCC---CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE-----EEEeeCCCchhhhhhhh
Q 047406 164 SFKQENFVHGRDS---PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI-----FVLEPQPWVSYEKNRRV 235 (290)
Q Consensus 164 ~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~ 235 (290)
.+.+.||++. |. +.+.||+|+|+-||.+++ +..+--+++.++.+.|+|+|. |++..| ..|.
T Consensus 86 ~I~qqDFm~r-plp~~~~e~FdvIs~SLVLNfVP---~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP-~~Cv------ 154 (219)
T PF11968_consen 86 GILQQDFMER-PLPKNESEKFDVISLSLVLNFVP---DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP-LPCV------ 154 (219)
T ss_pred CceeeccccC-CCCCCcccceeEEEEEEEEeeCC---CHHHHHHHHHHHHHHhCCCCccCcceEEEEeC-chHh------
Confidence 4567788873 33 357899999999997764 234456999999999999999 888654 2232
Q ss_pred hhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 236 SETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.+.++...+....++...||..++....
T Consensus 155 --------~NSRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 155 --------TNSRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred --------hcccccCHHHHHHHHHhCCcEEEEEEec
Confidence 2223333333344899999999887655
No 186
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.29 E-value=4e-06 Score=81.55 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
+.+|||++||+|..++.++...+..+|+++|+++.+++.++.|+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~---------------------------------- 103 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL---------------------------------- 103 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------
Confidence 3689999999999999998877656899999999999999999876
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+++. .+.+...|....+.. ...||+|++..- +. ...++......++++|+++++
T Consensus 104 --------------N~~~-~~~v~~~Da~~~l~~-~~~fD~V~lDP~--------Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 104 --------------NGLE-NEKVFNKDANALLHE-ERKFDVVDIDPF--------GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------------hCCC-ceEEEhhhHHHHHhh-cCCCCEEEECCC--------CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 2222 355777776442221 356999996321 11 245677777888999999997
Q ss_pred eC
Q 047406 223 PQ 224 (290)
Q Consensus 223 ~~ 224 (290)
..
T Consensus 158 At 159 (382)
T PRK04338 158 AT 159 (382)
T ss_pred ec
Confidence 43
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.26 E-value=2.7e-06 Score=80.83 Aligned_cols=133 Identities=22% Similarity=0.372 Sum_probs=88.8
Q ss_pred cccccccccc-CCCCCch-h-----hHHh-hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 35 YKNYYGYRIG-QGLNEDP-R-----FKVL-KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 35 ~~~~~~~~~~-~~~~~~~-~-----l~~l-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
|-.||+|... |+..++- | -.++ ....+.++.|||+|||+|+++...|+. +..+|++++.| ++.+.|++-+
T Consensus 142 YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv 219 (517)
T KOG1500|consen 142 YFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLV 219 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHH
Confidence 5577887764 3333331 1 1112 123467899999999999999886664 66799999985 5778888866
Q ss_pred HHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEE
Q 047406 107 RKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILC 186 (290)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~ 186 (290)
.. +++.++|.+..+...+ ... ++..|+|++
T Consensus 220 ~~------------------------------------------------N~~~~rItVI~GKiEd-ieL-PEk~DviIS 249 (517)
T KOG1500|consen 220 AS------------------------------------------------NNLADRITVIPGKIED-IEL-PEKVDVIIS 249 (517)
T ss_pred hc------------------------------------------------CCccceEEEccCcccc-ccC-chhccEEEe
Confidence 54 5677889998888765 233 367999998
Q ss_pred chhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 187 LSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 187 ~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
-..- ++-.+ +.+....-...+.|+|.|.++=..
T Consensus 250 EPMG-~mL~N---ERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 250 EPMG-YMLVN---ERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred ccch-hhhhh---HHHHHHHHHHHhhcCCCCcccCcc
Confidence 4332 11121 334444445668999999988643
No 188
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.26 E-value=2.6e-06 Score=77.31 Aligned_cols=151 Identities=17% Similarity=0.200 Sum_probs=97.1
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.-..++|||||-|.+...+..+. .-+++-+|-|-.+++.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~------------------------------------ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA------------------------------------ 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc------------------------------------
Confidence 34689999999999999887763 44899999999999888652
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
+ .+++ .......|-. .+++.+.++|+|+++..+||. .++...+.+|...|||+|.|+-
T Consensus 115 q-------------dp~i--~~~~~v~DEE-~Ldf~ens~DLiisSlslHW~------NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 115 Q-------------DPSI--ETSYFVGDEE-FLDFKENSVDLIISSLSLHWT------NDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred C-------------CCce--EEEEEecchh-cccccccchhhhhhhhhhhhh------ccCchHHHHHHHhcCCCccchh
Confidence 0 0122 2344444432 256778999999999999998 4678889999999999999987
Q ss_pred eeCCC-chhhhh--hhhhhhhhcc--ccccc-cCchhHHHHHHHHcCCeeeEeccC
Q 047406 222 EPQPW-VSYEKN--RRVSETTATN--FQNIK-LYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 222 ~~~~~-~~~~~~--~~~~~~~~~~--~~~~~-~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+.-.- .-|+-. -.+.+.-+.. -+|+. +..-.-.-.+|.++||....+-.+
T Consensus 173 smlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 173 SMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred HHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 42111 011111 1111221111 12221 111122233899999998776555
No 189
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.25 E-value=6e-06 Score=75.85 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=46.1
Q ss_pred cCCCCCchh-hHHhhhh--ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 44 GQGLNEDPR-FKVLKKE--WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 44 ~~~~~~~~~-l~~l~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
+|+...++. ++.+... ..++.+|||||||+|.++..+++. +.+++++|+++.+++.++.++
T Consensus 8 GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~ 71 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDE 71 (258)
T ss_pred CccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHh
Confidence 444455544 3333332 357789999999999999999987 458999999999999988754
No 190
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.25 E-value=1.1e-05 Score=72.98 Aligned_cols=116 Identities=18% Similarity=0.360 Sum_probs=87.0
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG 131 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (290)
+..+.+. ...++++|||.=+|.-+..+|...|. .+|+++|+++++.+.+...+..
T Consensus 65 l~~li~~-~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~----------------------- 120 (237)
T KOG1663|consen 65 LQMLIRL-LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL----------------------- 120 (237)
T ss_pred HHHHHHH-hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-----------------------
Confidence 3334444 46789999999999988888888875 4899999999999999776655
Q ss_pred CCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC-----CCCCceeEEEEchhhhhhhhcCCchHHHHHH
Q 047406 132 DGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-----SPEKYYDAILCLSVTKWIHLNWGDDGLITLF 206 (290)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l 206 (290)
.+....|.+.++...+.++ ...+.||+++. +.+++.-...+
T Consensus 121 -------------------------agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv---------DadK~nY~~y~ 166 (237)
T KOG1663|consen 121 -------------------------AGVDHKITFIEGPALESLDELLADGESGTFDFAFV---------DADKDNYSNYY 166 (237)
T ss_pred -------------------------ccccceeeeeecchhhhHHHHHhcCCCCceeEEEE---------ccchHHHHHHH
Confidence 3455678888887766422 14588999994 33344556889
Q ss_pred HHHHhhcCCCcEEEEeeCCC
Q 047406 207 MRIWKLLRPGGIFVLEPQPW 226 (290)
Q Consensus 207 ~~~~~~LkpgG~l~i~~~~~ 226 (290)
.++.+++++||++++.---|
T Consensus 167 e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 167 ERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred HHHHhhcccccEEEEecccc
Confidence 99999999999999954333
No 191
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=9.6e-06 Score=80.08 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=79.1
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
+++++||+=||.|.+++.+|+. ..+|+|+|+++++++.|+.++..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~--------------------------------- 337 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAA--------------------------------- 337 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHH---------------------------------
Confidence 5689999999999999999975 55999999999999999999886
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCC--CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP--EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
+++.+ +.|...+..+..+.. ...+|.|+. |-...++..-+.+....++|..++
T Consensus 338 ---------------n~i~N-~~f~~~~ae~~~~~~~~~~~~d~Vvv---------DPPR~G~~~~~lk~l~~~~p~~Iv 392 (432)
T COG2265 338 ---------------NGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVV---------DPPRAGADREVLKQLAKLKPKRIV 392 (432)
T ss_pred ---------------cCCCc-EEEEeCCHHHHhhhccccCCCCEEEE---------CCCCCCCCHHHHHHHHhcCCCcEE
Confidence 45544 888888876643332 257899995 223345554444555667899999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
++++.
T Consensus 393 YVSCN 397 (432)
T COG2265 393 YVSCN 397 (432)
T ss_pred EEeCC
Confidence 99865
No 192
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.24 E-value=9.2e-06 Score=72.75 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=69.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
+....|.|+|||.+.++..+.. ...|...|+-+.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~------------------------------------------- 104 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP------------------------------------------- 104 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-------------------------------------------
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-------------------------------------------
Confidence 5567999999999998755432 246999998430
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
+-.+..+|+.+ .|.+++..|++++.-.| +. -+...++.+.+|+|+|||.|.
T Consensus 105 ---------------------n~~Vtacdia~-vPL~~~svDv~VfcLSL--MG-----Tn~~~fi~EA~RvLK~~G~L~ 155 (219)
T PF05148_consen 105 ---------------------NPRVTACDIAN-VPLEDESVDVAVFCLSL--MG-----TNWPDFIREANRVLKPGGILK 155 (219)
T ss_dssp ---------------------STTEEES-TTS--S--TT-EEEEEEES-----S-----S-HHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCCEEEecCcc-CcCCCCceeEEEEEhhh--hC-----CCcHHHHHHHHheeccCcEEE
Confidence 12255677755 68888999999987666 32 356789999999999999999
Q ss_pred EeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406 221 LEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI 269 (290)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~ 269 (290)
|..- .+.+. ..+.|.+ .+.+.||+...--
T Consensus 156 IAEV---------------~SRf~----~~~~F~~-~~~~~GF~~~~~d 184 (219)
T PF05148_consen 156 IAEV---------------KSRFE----NVKQFIK-ALKKLGFKLKSKD 184 (219)
T ss_dssp EEEE---------------GGG-S-----HHHHHH-HHHCTTEEEEEEE
T ss_pred EEEe---------------cccCc----CHHHHHH-HHHHCCCeEEecc
Confidence 9531 11111 3466777 7899999988643
No 193
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.24 E-value=4.5e-06 Score=77.32 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=38.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
.++.+|||+|||+|.++..+++..+ +|+|+|+|+.+++.++++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHh
Confidence 5778999999999999999999843 899999999999998764
No 194
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.24 E-value=1.8e-05 Score=70.80 Aligned_cols=122 Identities=17% Similarity=0.239 Sum_probs=86.2
Q ss_pred EEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHH
Q 047406 66 CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEK 145 (290)
Q Consensus 66 vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (290)
|+||||--|.+++.+.+...+..++++|+++.-++.|+.++..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~------------------------------------- 43 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK------------------------------------- 43 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-------------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-------------------------------------
Confidence 6899999999999999987667899999999999999999887
Q ss_pred HhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406 146 KAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQP 225 (290)
Q Consensus 146 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (290)
.++.+.+++..+|.++.++. .+..|.|+...+ |.....+++++....++..-.|++++..
T Consensus 44 -----------~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAGM--------GG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 44 -----------YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAGM--------GGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp -----------TT-TTTEEEEE-SGGGG--G-GG---EEEEEEE---------HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred -----------cCCcccEEEEECCcccccCC-CCCCCEEEEecC--------CHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 45667899999998774322 223688776444 2355678888888888777789997651
Q ss_pred CchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406 226 WVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVED 268 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~ 268 (290)
.....+.+|.+.||.+++.
T Consensus 104 ------------------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 104 ------------------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp -------------------------HHHHHHHHHHTTEEEEEE
T ss_pred ------------------------ChHHHHHHHHHCCCEEEEe
Confidence 1233444788899987744
No 195
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.23 E-value=2.8e-06 Score=77.11 Aligned_cols=144 Identities=19% Similarity=0.314 Sum_probs=96.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..|.+|||..+|-|..++..+++ ++..|+.++.+|+.++.|.-|-+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwS-------------------------------- 179 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWS-------------------------------- 179 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCC--------------------------------
Confidence 46899999999999999886664 566999999999999998876443
Q ss_pred HHHHHHhhhcCCCccccCcC-cceeEeecccccCC-CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 141 AQEEKKAISRNCSPAERNLF-DIVSFKQENFVHGR-DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~-~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
.++. ..+....+|..+.. ..++.+||+|+--.-- +++. +.---+.+.++++++|+|||.
T Consensus 180 ----------------r~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR--fS~A-geLYseefY~El~RiLkrgGr 240 (287)
T COG2521 180 ----------------RELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR--FSLA-GELYSEEFYRELYRILKRGGR 240 (287)
T ss_pred ----------------ccccccccEEecccHHHHHhcCCccccceEeeCCCc--cchh-hhHhHHHHHHHHHHHcCcCCc
Confidence 2222 24788888877643 2356789999963211 2111 111126899999999999999
Q ss_pred EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
++--.+. ....|.... .+....+ .|++.||.+|+....
T Consensus 241 lFHYvG~-------------Pg~ryrG~d-~~~gVa~-RLr~vGF~~v~~~~~ 278 (287)
T COG2521 241 LFHYVGN-------------PGKRYRGLD-LPKGVAE-RLRRVGFEVVKKVRE 278 (287)
T ss_pred EEEEeCC-------------CCcccccCC-hhHHHHH-HHHhcCceeeeeehh
Confidence 9984331 011111111 1233334 789999998766543
No 196
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.20 E-value=9.9e-06 Score=75.78 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=83.4
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
++||-||.|.|..+..+.+..+..+++.+||++..++.|++.+....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~--------------------------------- 124 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS--------------------------------- 124 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcc---------------------------------
Confidence 69999999999999999998776799999999999999999865410
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEE
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i 221 (290)
......++.....|..+-.......||+|++-..=. . ...+.+ ..+++.+.++|+++|+++.
T Consensus 125 ------------~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp-~---gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 125 ------------GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDP-V---GPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred ------------cccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCC-C---CcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 011135678888887764444445899999743310 0 011111 6899999999999999999
Q ss_pred eeC
Q 047406 222 EPQ 224 (290)
Q Consensus 222 ~~~ 224 (290)
+..
T Consensus 189 q~~ 191 (282)
T COG0421 189 QAG 191 (282)
T ss_pred ecC
Confidence 743
No 197
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.19 E-value=5e-07 Score=80.70 Aligned_cols=93 Identities=22% Similarity=0.357 Sum_probs=70.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
+..++||+|.|.|.++..++..+. +|+++++|..+....++.-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~y---------------------------------- 155 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNY---------------------------------- 155 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCC----------------------------------
Confidence 357999999999999999988765 68999999988877665211
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC-CcEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP-GGIFV 220 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp-gG~l~ 220 (290)
++...+ ++.+ .+-+||+|.|.+++..+ .+.-.+++.++.+|.| .|.++
T Consensus 156 ----------------nVl~~~-----ew~~----t~~k~dli~clNlLDRc------~~p~kLL~Di~~vl~psngrvi 204 (288)
T KOG3987|consen 156 ----------------NVLTEI-----EWLQ----TDVKLDLILCLNLLDRC------FDPFKLLEDIHLVLAPSNGRVI 204 (288)
T ss_pred ----------------ceeeeh-----hhhh----cCceeehHHHHHHHHhh------cChHHHHHHHHHHhccCCCcEE
Confidence 111112 2221 23469999999999866 4668999999999999 88777
Q ss_pred E
Q 047406 221 L 221 (290)
Q Consensus 221 i 221 (290)
+
T Consensus 205 v 205 (288)
T KOG3987|consen 205 V 205 (288)
T ss_pred E
Confidence 7
No 198
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.17 E-value=3.9e-05 Score=71.35 Aligned_cols=180 Identities=16% Similarity=0.208 Sum_probs=108.3
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
..+||--|||-|+++..+|.. +..+.|.|.|--|+-...--+... .....+.-.|++..=+... +..
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~-------~~~~~~~I~Pf~~~~sn~~----~~~ 123 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHC-------SQPNQFTIYPFVHSFSNQK----SRE 123 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHccc-------CCCCcEEEecceecccCCC----CHH
Confidence 479999999999999999997 458999999998876665543221 0111222224443222111 111
Q ss_pred HHHHhhhcCCCc----cccCcCcceeEeecccccCCCCC--CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 143 EEKKAISRNCSP----AERNLFDIVSFKQENFVHGRDSP--EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 143 ~~~~~~~~~~~~----~~~~~~~~i~~~~~d~~~~~~~~--~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
+ -.++..+-+ .......++....+||.+....+ .+.||+|++.+-+. ....+.+.++.|.++||||
T Consensus 124 d--qlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID------TA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 124 D--QLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID------TAENIIEYIETIEHLLKPG 195 (270)
T ss_pred H--hCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee------chHHHHHHHHHHHHHhccC
Confidence 1 011111111 11222457889999998854443 47999999875542 2366789999999999999
Q ss_pred cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
| +.|..+|..--.. ... ..+-..+.+.-++..+ ++++.||++++.-.
T Consensus 196 G-~WIN~GPLlyh~~--~~~---~~~~~sveLs~eEi~~-l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 G-YWINFGPLLYHFE--PMS---IPNEMSVELSLEEIKE-LIEKLGFEIEKEES 242 (270)
T ss_pred C-EEEecCCccccCC--CCC---CCCCcccCCCHHHHHH-HHHHCCCEEEEEEE
Confidence 9 5555554321000 000 0011125677777777 78899999886533
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.16 E-value=9.9e-06 Score=77.90 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=39.5
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
+.++||++||+|.+++.++... .+|+|+|+++.+++.|++++..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH
Confidence 4579999999999999988874 4899999999999999998876
No 200
>PRK04148 hypothetical protein; Provisional
Probab=98.14 E-value=2.3e-05 Score=65.69 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=65.2
Q ss_pred CCCcEEEecCCCCh-hhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 62 EGKDCLDIGCNSGI-ITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 62 ~~~~vLDiGcG~G~-~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
++.+++|||||+|. ++..|++. +..|+++|+++.+++.++..
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----------------------------------- 58 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----------------------------------- 58 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-----------------------------------
Confidence 45789999999996 88777764 45999999999998888663
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.+.+...|+.+.....-..+|+|++...- .++..-+.++.+.+ |.-++
T Consensus 59 ---------------------~~~~v~dDlf~p~~~~y~~a~liysirpp---------~el~~~~~~la~~~--~~~~~ 106 (134)
T PRK04148 59 ---------------------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP---------RDLQPFILELAKKI--NVPLI 106 (134)
T ss_pred ---------------------CCeEEECcCCCCCHHHHhcCCEEEEeCCC---------HHHHHHHHHHHHHc--CCCEE
Confidence 25678888876433334679999986543 45555555555544 44456
Q ss_pred Eee
Q 047406 221 LEP 223 (290)
Q Consensus 221 i~~ 223 (290)
+.+
T Consensus 107 i~~ 109 (134)
T PRK04148 107 IKP 109 (134)
T ss_pred EEc
Confidence 643
No 201
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.14 E-value=9.4e-06 Score=74.37 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=78.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
+..++||-||-|.|..+..+.+..+..+|+++|+++.+++.|++.+.....
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~----------------------------- 125 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE----------------------------- 125 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT-----------------------------
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc-----------------------------
Confidence 467999999999999999988765456999999999999999997654110
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC-ceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCc
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK-YYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGG 217 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG 217 (290)
.--..++.+...|....+..... .||+|+.-..-... .... -..+++.+.++|+|||
T Consensus 126 ----------------~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~----~~~~l~t~ef~~~~~~~L~~~G 185 (246)
T PF01564_consen 126 ----------------GLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDG----PAPNLFTREFYQLCKRRLKPDG 185 (246)
T ss_dssp ----------------TGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTS----CGGGGSSHHHHHHHHHHEEEEE
T ss_pred ----------------ccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCC----CcccccCHHHHHHHHhhcCCCc
Confidence 01123688888887663333334 89999973221000 0111 2688999999999999
Q ss_pred EEEEee
Q 047406 218 IFVLEP 223 (290)
Q Consensus 218 ~l~i~~ 223 (290)
++++..
T Consensus 186 v~v~~~ 191 (246)
T PF01564_consen 186 VLVLQA 191 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999964
No 202
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.13 E-value=5e-06 Score=71.84 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=54.0
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
..|+|+.||.|..++++|+.+ .+|+++|+++..++.|+.|++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~v----------------------------------- 43 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEV----------------------------------- 43 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHH-----------------------------------
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHH-----------------------------------
Confidence 369999999999999999984 4899999999999999999876
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCC-CCC-ceeEEEEc
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEK-YYDAILCL 187 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~-~fD~I~~~ 187 (290)
.+..++|.+..+|+.+.... ... .+|+|++.
T Consensus 44 -------------YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 44 -------------YGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp -------------TT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred -------------cCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 44456799999999874222 111 28999984
No 203
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.12 E-value=3.5e-05 Score=70.39 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=38.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.++.+|||+|||+|.++..+++..+ .++++|+|+.+++.++.+.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHh
Confidence 5678999999999999999998853 6999999999999887643
No 204
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.12 E-value=2.6e-05 Score=68.72 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=78.4
Q ss_pred HHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406 54 KVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG 133 (290)
Q Consensus 54 ~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (290)
.++.+...+|.++||+-+|||++++..+.+ ++.+++.+|.|..++...++|+..
T Consensus 35 Nil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~------------------------- 88 (187)
T COG0742 35 NILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKA------------------------- 88 (187)
T ss_pred HhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHH-------------------------
Confidence 344331367899999999999999996665 566999999999999999999876
Q ss_pred cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCC--ceeEEEEchhhhhhhhcCCchHH--HHHHHH-
Q 047406 134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEK--YYDAILCLSVTKWIHLNWGDDGL--ITLFMR- 208 (290)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~- 208 (290)
.++.....+...|....+..... +||+|+.-.-. ..... ...+..
T Consensus 89 -----------------------l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy-------~~~l~~~~~~~~~~ 138 (187)
T COG0742 89 -----------------------LGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPY-------AKGLLDKELALLLL 138 (187)
T ss_pred -----------------------hCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCC-------ccchhhHHHHHHHH
Confidence 22334466666666543222333 49999964332 21222 222233
Q ss_pred -HHhhcCCCcEEEEeeC
Q 047406 209 -IWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 209 -~~~~LkpgG~l~i~~~ 224 (290)
-...|+|+|.++++..
T Consensus 139 ~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 139 EENGWLKPGALIVVEHD 155 (187)
T ss_pred HhcCCcCCCcEEEEEeC
Confidence 3466999999999865
No 205
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.10 E-value=1.9e-05 Score=79.47 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=81.1
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+..+||||||.|.++..+|..+|...++|+|++...+..+...+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~--------------------------------- 393 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE--------------------------------- 393 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH---------------------------------
Confidence 35789999999999999999999999999999999988888775543
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCchH--HHHHHHHHHhhcCCCcE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDDG--LITLFMRIWKLLRPGGI 218 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~~--~~~~l~~~~~~LkpgG~ 218 (290)
.++ .++.+...|+... ...+.+++|.|+.++-=-|..-...+.- ...++..+.+.|+|||.
T Consensus 394 ---------------~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 394 ---------------QNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGN 457 (506)
T ss_pred ---------------cCC-CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence 233 2455555554321 1235678999998765444211000111 15889999999999999
Q ss_pred EEEeeC
Q 047406 219 FVLEPQ 224 (290)
Q Consensus 219 l~i~~~ 224 (290)
+.+.+.
T Consensus 458 i~~~TD 463 (506)
T PRK01544 458 LVFASD 463 (506)
T ss_pred EEEEcC
Confidence 999654
No 206
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.06 E-value=9.1e-06 Score=78.54 Aligned_cols=109 Identities=24% Similarity=0.415 Sum_probs=88.7
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
-...++..++|+|||.|.....++- +....++|+|.++..+..+......
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~----------------------------- 155 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKK----------------------------- 155 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHH-----------------------------
Confidence 3346778999999999999998876 4556899999999988888776654
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
..+.+...+...|+.+ .++++..||.+.++.+.+|. .....++.++++.++|||
T Consensus 156 -------------------~~l~~k~~~~~~~~~~-~~fedn~fd~v~~ld~~~~~------~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 156 -------------------AYLDNKCNFVVADFGK-MPFEDNTFDGVRFLEVVCHA------PDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred -------------------HHhhhhcceehhhhhc-CCCCccccCcEEEEeecccC------CcHHHHHHHHhcccCCCc
Confidence 2334456667778877 47888999999999999544 578999999999999999
Q ss_pred EEEEe
Q 047406 218 IFVLE 222 (290)
Q Consensus 218 ~l~i~ 222 (290)
+++..
T Consensus 210 ~~i~~ 214 (364)
T KOG1269|consen 210 LFIVK 214 (364)
T ss_pred eEEeH
Confidence 99994
No 207
>PRK00536 speE spermidine synthase; Provisional
Probab=98.04 E-value=3.3e-05 Score=71.58 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=72.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
+..++||=||.|.|..+..+.+. +. +|+.+|||+.+++.+++++..+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~----------------------------- 119 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHE----------------------------- 119 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHH-----------------------------
Confidence 46689999999999999999886 43 999999999999999997665210
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.+. ..++.+.. .+.+ ...++||+|++-... -...++.+.+.|+|||+++
T Consensus 120 ------------~~~----DpRv~l~~-~~~~---~~~~~fDVIIvDs~~-----------~~~fy~~~~~~L~~~Gi~v 168 (262)
T PRK00536 120 ------------VKN----NKNFTHAK-QLLD---LDIKKYDLIICLQEP-----------DIHKIDGLKRMLKEDGVFI 168 (262)
T ss_pred ------------hhc----CCCEEEee-hhhh---ccCCcCCEEEEcCCC-----------ChHHHHHHHHhcCCCcEEE
Confidence 000 11233332 1211 123689999974221 1467788999999999999
Q ss_pred EeeC
Q 047406 221 LEPQ 224 (290)
Q Consensus 221 i~~~ 224 (290)
.+..
T Consensus 169 ~Qs~ 172 (262)
T PRK00536 169 SVAK 172 (262)
T ss_pred ECCC
Confidence 9543
No 208
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.03 E-value=3.3e-05 Score=72.26 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=70.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHc-------CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCC
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKF-------NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDG 133 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~-------~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (290)
.++.+|+|.+||+|.+...+.... ...+++|+|+++.++..|..++..++.
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~---------------------- 102 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI---------------------- 102 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH----------------------
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc----------------------
Confidence 456789999999999988876632 456899999999999999887654210
Q ss_pred cchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhh---hhh--h----cC------
Q 047406 134 LEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTK---WIH--L----NW------ 197 (290)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~---~~~--l----~~------ 197 (290)
-.....+...|........ ...||+|+++.-.- |.. + .|
T Consensus 103 -------------------------~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~ 157 (311)
T PF02384_consen 103 -------------------------DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPP 157 (311)
T ss_dssp -------------------------HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSS
T ss_pred -------------------------ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCC
Confidence 0112345666655432222 47899999963221 100 0 00
Q ss_pred CchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 198 GDDGLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
....-..++..+.+.|++||.+++..+
T Consensus 158 ~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 158 KSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccchhhhhHHHHHhhcccccceeEEec
Confidence 011223577889999999999877544
No 209
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=7.9e-06 Score=69.41 Aligned_cols=47 Identities=30% Similarity=0.540 Sum_probs=40.2
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|+.++|+|||.|-++...+. +....|+|+||+|++++.+..|+..
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeE 93 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEE 93 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHH
Confidence 5899999999999999865444 4566899999999999999998765
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.01 E-value=6.3e-05 Score=78.53 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=77.9
Q ss_pred hc-cCCCcEEEecCCCChhhHHHHhHc------------C------------------------------CceEEEEeCC
Q 047406 59 EW-FEGKDCLDIGCNSGIITIQIAQKF------------N------------------------------CRSILGIDID 95 (290)
Q Consensus 59 ~~-~~~~~vLDiGcG~G~~~~~la~~~------------~------------------------------~~~i~g~Dis 95 (290)
.| .++..++|.+||+|.+.+..|... + ...|+|+|++
T Consensus 186 ~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did 265 (702)
T PRK11783 186 GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDID 265 (702)
T ss_pred CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECC
Confidence 45 567899999999999988876521 0 1269999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-
Q 047406 96 SNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR- 174 (290)
Q Consensus 96 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~- 174 (290)
+.+++.|+.|+.. .++.+.+.+.+.|+.+..
T Consensus 266 ~~av~~A~~N~~~------------------------------------------------~g~~~~i~~~~~D~~~~~~ 297 (702)
T PRK11783 266 PRVIQAARKNARR------------------------------------------------AGVAELITFEVKDVADLKN 297 (702)
T ss_pred HHHHHHHHHHHHH------------------------------------------------cCCCcceEEEeCChhhccc
Confidence 9999999999887 445556889999987631
Q ss_pred CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcC---CCcEEEEeeC
Q 047406 175 DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLR---PGGIFVLEPQ 224 (290)
Q Consensus 175 ~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lk---pgG~l~i~~~ 224 (290)
+...++||+|+|+.-. ..--....++..++..+...++ +|+.+++-.+
T Consensus 298 ~~~~~~~d~IvtNPPY--g~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 298 PLPKGPTGLVISNPPY--GERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred ccccCCCCEEEECCCC--cCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 1123579999997332 1000122344555555444444 8888877443
No 211
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.99 E-value=0.00014 Score=73.33 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=39.4
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--------CceEEEEeCCHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--------CRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--------~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
...+|||.+||+|.+...++...+ ...++|+|+++.++..++.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 346999999999999988877653 14789999999999999988755
No 212
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.97 E-value=6.8e-05 Score=69.17 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=57.1
Q ss_pred eEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccc
Q 047406 164 SFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNF 243 (290)
Q Consensus 164 ~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 243 (290)
.+..+|+.+ .|.++++.|++++.-.| +. .++..++.++.++|+|||.++|..- .+.|
T Consensus 213 ~V~~cDm~~-vPl~d~svDvaV~CLSL--Mg-----tn~~df~kEa~RiLk~gG~l~IAEv---------------~SRf 269 (325)
T KOG3045|consen 213 RVIACDMRN-VPLEDESVDVAVFCLSL--MG-----TNLADFIKEANRILKPGGLLYIAEV---------------KSRF 269 (325)
T ss_pred ceeeccccC-CcCccCcccEEEeeHhh--hc-----ccHHHHHHHHHHHhccCceEEEEeh---------------hhhc
Confidence 456677776 68888999998876555 32 4678999999999999999999431 1112
Q ss_pred cccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 244 QNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
.. -..|.+ .+.+.||.+.+....
T Consensus 270 ~d----v~~f~r-~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 270 SD----VKGFVR-ALTKLGFDVKHKDVS 292 (325)
T ss_pred cc----HHHHHH-HHHHcCCeeeehhhh
Confidence 11 133666 789999998766554
No 213
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.00012 Score=65.96 Aligned_cols=99 Identities=22% Similarity=0.246 Sum_probs=75.6
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
+.+++|||+|.|-.++-+|-.+|..+++-+|-....+...+.-...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e---------------------------------- 113 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE---------------------------------- 113 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH----------------------------------
Confidence 6899999999999999999888988999999988887777664443
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.++ +++.+.+....+..+.... ||+|.|+.+. .+..+++-+..++++||.++.
T Consensus 114 --------------L~L-~nv~i~~~RaE~~~~~~~~-~D~vtsRAva----------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 114 --------------LGL-ENVEIVHGRAEEFGQEKKQ-YDVVTSRAVA----------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --------------hCC-CCeEEehhhHhhccccccc-CcEEEeehcc----------chHHHHHHHHHhcccCCcchh
Confidence 333 2477777766553222112 9999998874 467788889999999998765
No 214
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.94 E-value=7.1e-05 Score=66.93 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=67.0
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.++...+|||||.|....+.|...++...+|+|+.+...+.|.......-.. ... .
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~-------~~~-------~--------- 96 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR-------MKH-------Y--------- 96 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH-------HHH-------C---------
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH-------HHH-------h---------
Confidence 45788999999999999999888888878999999999998888766542110 000 0
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCC--CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR--DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
..-...+.+.++|+.+.- ...-...|+|++++.+ + ++++..-+.+....|++|-
T Consensus 97 -----------------g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F-----~~~l~~~L~~~~~~lk~G~ 152 (205)
T PF08123_consen 97 -----------------GKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--F-----DPDLNLALAELLLELKPGA 152 (205)
T ss_dssp -----------------TB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T------HHHHHHHHHHHTTS-TT-
T ss_pred -----------------hcccccceeeccCccccHhHhhhhcCCCEEEEeccc--c-----CHHHHHHHHHHHhcCCCCC
Confidence 001235778888887620 0001346999999886 2 2455555577778888876
Q ss_pred EEEE
Q 047406 218 IFVL 221 (290)
Q Consensus 218 ~l~i 221 (290)
.++-
T Consensus 153 ~IIs 156 (205)
T PF08123_consen 153 RIIS 156 (205)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 215
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.94 E-value=0.00016 Score=68.82 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=81.4
Q ss_pred hhhhccCCCcEEEecCCCChhhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhcc
Q 047406 56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKG 131 (290)
Q Consensus 56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (290)
|...+.++.+++|+|||+|.-+..|...+. ...++++|+|.+.|+.+...+..
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~----------------------- 126 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL----------------------- 126 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-----------------------
Confidence 344456788999999999987666555442 35799999999999999887762
Q ss_pred CCcchhhhhHHHHHHhhhcCCCccccCcC-cceeEeecccccC---CCC--CCCceeEEEEchhhhhhhhcCCchHHHHH
Q 047406 132 DGLEKNVTAAQEEKKAISRNCSPAERNLF-DIVSFKQENFVHG---RDS--PEKYYDAILCLSVTKWIHLNWGDDGLITL 205 (290)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d~~~~---~~~--~~~~fD~I~~~~vl~~~~l~~~~~~~~~~ 205 (290)
.... -.+.-..+|+.+. ++. ......+++..... +. |+..+....+
T Consensus 127 -------------------------~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSs--iG-Nf~~~ea~~f 178 (319)
T TIGR03439 127 -------------------------GNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSS--IG-NFSRPEAAAF 178 (319)
T ss_pred -------------------------ccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCcc--cc-CCCHHHHHHH
Confidence 0111 1245577777653 111 12346777776543 22 4566788899
Q ss_pred HHHHHh-hcCCCcEEEEee
Q 047406 206 FMRIWK-LLRPGGIFVLEP 223 (290)
Q Consensus 206 l~~~~~-~LkpgG~l~i~~ 223 (290)
|+++.+ .|+|||.|++..
T Consensus 179 L~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 179 LAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHHHHhhCCCCCEEEEec
Confidence 999999 999999999954
No 216
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=5.4e-05 Score=72.51 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=83.2
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
....+|.+|+|.-+|-|.+++.+|.. +..+|+++|++|.+++..++|++.
T Consensus 184 ~~v~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~L----------------------------- 233 (341)
T COG2520 184 ELVKEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRL----------------------------- 233 (341)
T ss_pred hhhcCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHh-----------------------------
Confidence 33467999999999999999998886 444599999999999999999987
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
+.+...+....+|..... ...+.+|-|++.... .....+....+++++||
T Consensus 234 -------------------N~v~~~v~~i~gD~rev~-~~~~~aDrIim~~p~----------~a~~fl~~A~~~~k~~g 283 (341)
T COG2520 234 -------------------NKVEGRVEPILGDAREVA-PELGVADRIIMGLPK----------SAHEFLPLALELLKDGG 283 (341)
T ss_pred -------------------cCccceeeEEeccHHHhh-hccccCCEEEeCCCC----------cchhhHHHHHHHhhcCc
Confidence 555566889999987742 222789999975442 33566777888899999
Q ss_pred EEEEe
Q 047406 218 IFVLE 222 (290)
Q Consensus 218 ~l~i~ 222 (290)
++-+.
T Consensus 284 ~iHyy 288 (341)
T COG2520 284 IIHYY 288 (341)
T ss_pred EEEEE
Confidence 88884
No 217
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=8e-05 Score=67.82 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=96.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.++.+|||+|+++|.++-.+.++ ++..|+|+|..-..+.+-..+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~----------------------------------- 121 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRN----------------------------------- 121 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhc-----------------------------------
Confidence 68899999999999999998875 566999999988777665432
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
-.+.+.+...|++...+. -.+..|+++|--.. + .+..+|..+..+++|++.+
T Consensus 122 ------------------d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF--I-------SL~~iLp~l~~l~~~~~~~ 174 (245)
T COG1189 122 ------------------DPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF--I-------SLKLILPALLLLLKDGGDL 174 (245)
T ss_pred ------------------CCcEEEEecCChhhCCHHHcccCCCeEEEEeeh--h-------hHHHHHHHHHHhcCCCceE
Confidence 122356666676653221 12478999984433 2 3578899999999999888
Q ss_pred EEeeCCCchhhhhhhhhh---hhhccccccccCchhHHHHHHHHcCCeeeEeccCCCCCCCCCCCCcceeeec
Q 047406 220 VLEPQPWVSYEKNRRVSE---TTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGSGGLSSSKTGFNRPIFLFR 289 (290)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~~~~~~~~~~~~~~~~~~~ 289 (290)
+.-.-| .++-.+..-. ..+. .......-..+.. ++...||.+..++.+ +-....|-...+..++
T Consensus 175 v~LvKP--QFEagr~~v~kkGvv~d-~~~~~~v~~~i~~-~~~~~g~~~~gl~~S--pi~G~~GNiE~l~~~~ 241 (245)
T COG1189 175 VLLVKP--QFEAGREQVGKKGVVRD-PKLHAEVLSKIEN-FAKELGFQVKGLIKS--PIKGGKGNIEFLLLLK 241 (245)
T ss_pred EEEecc--hhhhhhhhcCcCceecC-cchHHHHHHHHHH-HHhhcCcEEeeeEcc--CccCCCCcEeeeeeee
Confidence 773211 1111111110 0000 0000111123333 667789999999988 4444444233444443
No 218
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=3.1e-05 Score=68.64 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=83.8
Q ss_pred hhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 58 KEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
+++..|++|||+|+|+|..++..+. .+...|+++|++|...+...-|+..
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~a----------------------------- 124 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAA----------------------------- 124 (218)
T ss_pred ccccccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhh-----------------------------
Confidence 4567899999999999999887554 4566899999998887777766554
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
++. .+.+...|... .+..+|+|+...+. ++..-..+++. +...+...|
T Consensus 125 -------------------ngv--~i~~~~~d~~g----~~~~~Dl~LagDlf------y~~~~a~~l~~-~~~~l~~~g 172 (218)
T COG3897 125 -------------------NGV--SILFTHADLIG----SPPAFDLLLAGDLF------YNHTEADRLIP-WKDRLAEAG 172 (218)
T ss_pred -------------------ccc--eeEEeeccccC----CCcceeEEEeecee------cCchHHHHHHH-HHHHHHhCC
Confidence 221 47777777643 45779999998775 22333344444 777777788
Q ss_pred EEEEeeCCCchhhhhhhhh
Q 047406 218 IFVLEPQPWVSYEKNRRVS 236 (290)
Q Consensus 218 ~l~i~~~~~~~~~~~~~~~ 236 (290)
..++...|++.+....++.
T Consensus 173 ~~vlvgdp~R~~lpk~~l~ 191 (218)
T COG3897 173 AAVLVGDPGRAYLPKKRLE 191 (218)
T ss_pred CEEEEeCCCCCCCchhhhh
Confidence 8888888888776655543
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00012 Score=70.81 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=83.0
Q ss_pred hhhhccCCCcEEEecCCCChhhHHHHhHcCC--------------------------------c-------eEEEEeCCH
Q 047406 56 LKKEWFEGKDCLDIGCNSGIITIQIAQKFNC--------------------------------R-------SILGIDIDS 96 (290)
Q Consensus 56 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------~-------~i~g~Dis~ 96 (290)
..+.|.++..++|.-||+|.+++..|....+ . .++|+|+|+
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 4566888899999999999999998776531 1 277999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC
Q 047406 97 NRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS 176 (290)
Q Consensus 97 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 176 (290)
.+++.|+.|++. .++.+.|.|.+.|+.. +..
T Consensus 265 r~i~~Ak~NA~~------------------------------------------------AGv~d~I~f~~~d~~~-l~~ 295 (381)
T COG0116 265 RHIEGAKANARA------------------------------------------------AGVGDLIEFKQADATD-LKE 295 (381)
T ss_pred HHHHHHHHHHHh------------------------------------------------cCCCceEEEEEcchhh-CCC
Confidence 999999999987 5567789999999976 333
Q ss_pred CCCceeEEEEchhhhhhhhcCCchH-H----HHHHHHHHhhcCCCcEEEEeeC
Q 047406 177 PEKYYDAILCLSVTKWIHLNWGDDG-L----ITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 177 ~~~~fD~I~~~~vl~~~~l~~~~~~-~----~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
+...+|+|+|+.--- .-.+.+. . ..+...+.+.++-.+.+++...
T Consensus 296 ~~~~~gvvI~NPPYG---eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 296 PLEEYGVVISNPPYG---ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred CCCcCCEEEeCCCcc---hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 337899999963321 0112221 2 2333445566677777777543
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.91 E-value=4.7e-05 Score=65.67 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=29.7
Q ss_pred CCCcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSN 97 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~ 97 (290)
.+.+|||+||++|.++..++++. +...|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 34899999999999999988875 3469999999764
No 221
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.91 E-value=9.2e-05 Score=71.91 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=76.1
Q ss_pred CcEEEecCCCChhhHHHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
.+|||+.||+|..++.++.+. +..+|+++|+++.+++.++.|+..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~---------------------------------- 91 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY---------------------------------- 91 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------
Confidence 589999999999999999874 346899999999999999999876
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+++ .++.+...|....+......||+|..-. ++ ....++..+.+.++++|++++.
T Consensus 92 --------------N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP--------fG--s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 92 --------------NSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP--------FG--TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --------------hCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC--------CC--CcHHHHHHHHHhcccCCEEEEE
Confidence 222 1366777776553222235799998532 12 1246788889999999999997
Q ss_pred e
Q 047406 223 P 223 (290)
Q Consensus 223 ~ 223 (290)
.
T Consensus 147 a 147 (374)
T TIGR00308 147 A 147 (374)
T ss_pred e
Confidence 4
No 222
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.88 E-value=0.00035 Score=63.01 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=92.6
Q ss_pred hhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhc
Q 047406 51 PRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEK 130 (290)
Q Consensus 51 ~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (290)
.|+..+...+..+.+++||||--|.++..+.+..++..+++.|+++.-++.|..++..
T Consensus 5 ~RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~---------------------- 62 (226)
T COG2384 5 KRLTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK---------------------- 62 (226)
T ss_pred HHHHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh----------------------
Confidence 5677777788889999999999999999999988888999999999999999998876
Q ss_pred cCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406 131 GDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW 210 (290)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~ 210 (290)
.++.+.++...+|....+ .+++.+|+|+...+ |......++++-.
T Consensus 63 --------------------------~~l~~~i~vr~~dgl~~l-~~~d~~d~ivIAGM--------GG~lI~~ILee~~ 107 (226)
T COG2384 63 --------------------------NNLSERIDVRLGDGLAVL-ELEDEIDVIVIAGM--------GGTLIREILEEGK 107 (226)
T ss_pred --------------------------cCCcceEEEeccCCcccc-CccCCcCEEEEeCC--------cHHHHHHHHHHhh
Confidence 567777888888886532 23457898886433 2345578888888
Q ss_pred hhcCCCcEEEEeeC
Q 047406 211 KLLRPGGIFVLEPQ 224 (290)
Q Consensus 211 ~~LkpgG~l~i~~~ 224 (290)
+-|+.=-.+++++.
T Consensus 108 ~~l~~~~rlILQPn 121 (226)
T COG2384 108 EKLKGVERLILQPN 121 (226)
T ss_pred hhhcCcceEEECCC
Confidence 87775567788654
No 223
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.86 E-value=7.6e-05 Score=70.34 Aligned_cols=45 Identities=24% Similarity=0.269 Sum_probs=32.5
Q ss_pred CCcEEEecCCCChh-hHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGII-TIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 63 ~~~vLDiGcG~G~~-~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..++||||||...+ .+.-++. .+++++|+||++.+++.|+.++..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~ 148 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVER 148 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHH
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHh
Confidence 56899999998765 4444444 478999999999999999999887
No 224
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.85 E-value=0.00015 Score=67.38 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=71.3
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
...+|||+|||+|..+..+...++ ..+++++|.|+.+++.++.-+...
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~------------------------------- 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG------------------------------- 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-------------------------------
Confidence 557999999999988777767666 348999999999999888754431
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFV 220 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (290)
.... ..........+..+. .+.|+|++.++| ..+. +.....+++++++.+.+ =+++
T Consensus 82 ----------------~~~~-~~~~~~~~~~~~~~~--~~~DLvi~s~~L--~EL~--~~~r~~lv~~LW~~~~~-~LVl 137 (274)
T PF09243_consen 82 ----------------PNNR-NAEWRRVLYRDFLPF--PPDDLVIASYVL--NELP--SAARAELVRSLWNKTAP-VLVL 137 (274)
T ss_pred ----------------cccc-cchhhhhhhcccccC--CCCcEEEEehhh--hcCC--chHHHHHHHHHHHhccC-cEEE
Confidence 0000 000000011111111 234999999999 4443 36678999999998877 4444
Q ss_pred EeeCCCchh
Q 047406 221 LEPQPWVSY 229 (290)
Q Consensus 221 i~~~~~~~~ 229 (290)
++++.-..+
T Consensus 138 VEpGt~~Gf 146 (274)
T PF09243_consen 138 VEPGTPAGF 146 (274)
T ss_pred EcCCChHHH
Confidence 455543333
No 225
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.0004 Score=66.95 Aligned_cols=116 Identities=21% Similarity=0.306 Sum_probs=80.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
.+|.+|||+.+++|.=+.++|+.+.+ ..|+++|+|+..++..+.++...
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl----------------------------- 205 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL----------------------------- 205 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc-----------------------------
Confidence 58899999999999999999998864 34699999999999999998873
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCC-CCC-CCceeEEEEc------hhh------hhhh----hcCCch
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGR-DSP-EKYYDAILCL------SVT------KWIH----LNWGDD 200 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~-~~~fD~I~~~------~vl------~~~~----l~~~~~ 200 (290)
++.. +.....|..... ..+ .++||.|++- .++ .|-- +..-..
T Consensus 206 -------------------G~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~ 265 (355)
T COG0144 206 -------------------GVRN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAK 265 (355)
T ss_pred -------------------CCCc-eEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHH
Confidence 2322 445555543211 112 2359999982 121 1110 000013
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406 201 GLITLFMRIWKLLRPGGIFVLEPQP 225 (290)
Q Consensus 201 ~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (290)
-+.++|...+++|+|||.|+.++-.
T Consensus 266 lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 266 LQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccC
Confidence 3579999999999999999997653
No 226
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00049 Score=61.54 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=68.6
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.++.+|+|+|+.+|.++..+++..+. ..|+|+|+.|
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p------------------------------------------ 80 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP------------------------------------------ 80 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc------------------------------------------
Confidence 467899999999999999998887664 3599999976
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccC-------CCCCCCceeEEEEchh--------hhhhhhcCCchHHH
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-------RDSPEKYYDAILCLSV--------TKWIHLNWGDDGLI 203 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~~~~fD~I~~~~v--------l~~~~l~~~~~~~~ 203 (290)
......+.+.+.|+.+. ......++|+|+|-.. .++... .....
T Consensus 81 ------------------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~---~~L~~ 139 (205)
T COG0293 81 ------------------MKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARS---MYLCE 139 (205)
T ss_pred ------------------cccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHH---HHHHH
Confidence 22233488889998773 1113345799998211 111100 12224
Q ss_pred HHHHHHHhhcCCCcEEEEe
Q 047406 204 TLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 204 ~~l~~~~~~LkpgG~l~i~ 222 (290)
..+.-....|+|||.+++.
T Consensus 140 ~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 140 LALEFALEVLKPGGSFVAK 158 (205)
T ss_pred HHHHHHHHeeCCCCeEEEE
Confidence 5666677899999999994
No 227
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.78 E-value=3.5e-05 Score=72.60 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=41.2
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.++..++|.+||.|.++..++...+ ...|+|+|.|+.+++.|++.+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 4678999999999999999999875 568999999999999998754
No 228
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.77 E-value=0.00066 Score=51.92 Aligned_cols=103 Identities=21% Similarity=0.341 Sum_probs=66.1
Q ss_pred EEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHH
Q 047406 66 CLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEE 144 (290)
Q Consensus 66 vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (290)
++|+|||+|... .++...+. ..++++|+++.++..+......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------ 94 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG------------------------------------ 94 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh------------------------------------
Confidence 999999999876 33443332 3788999999998884332210
Q ss_pred HHhhhcCCCccccCcCcceeEeeccccc-CCCCCC-CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 145 KKAISRNCSPAERNLFDIVSFKQENFVH-GRDSPE-KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~-~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
.....+.+...+... ..+... ..||++.+....+|. . ....+..+.+.++|+|.+++.
T Consensus 95 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 95 -------------AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL------P-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred -------------cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcC------C-HHHHHHHHHHhcCCCcEEEEE
Confidence 000004566666544 134444 479999433333222 1 688999999999999999996
Q ss_pred eCC
Q 047406 223 PQP 225 (290)
Q Consensus 223 ~~~ 225 (290)
...
T Consensus 155 ~~~ 157 (257)
T COG0500 155 DLL 157 (257)
T ss_pred ecc
Confidence 543
No 229
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.72 E-value=0.00022 Score=68.65 Aligned_cols=43 Identities=28% Similarity=0.553 Sum_probs=37.5
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.++||+-||.|.+++.+|.. ..+|+|+|+++.+++.|+.++..
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHH
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHH
Confidence 38999999999999999987 45899999999999999999876
No 230
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=6.9e-05 Score=69.80 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=83.2
Q ss_pred CchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406 49 EDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI 128 (290)
Q Consensus 49 ~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (290)
..|+...+......+..++|+|||.|-.+.. .|...+.|+|++...+..++..
T Consensus 32 ~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----------------------- 84 (293)
T KOG1331|consen 32 PWPMVRQFLDSQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----------------------- 84 (293)
T ss_pred ccHHHHHHHhccCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC-----------------------
Confidence 3366666666667899999999999976432 3556899999998777766541
Q ss_pred hccCCcchhhhhHHHHHHhhhcCCCccccCcCcce-eEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHH
Q 047406 129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIV-SFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFM 207 (290)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~ 207 (290)
+. .....|.++ +|..+.+||.+++..++||+.- ..--..+++
T Consensus 85 ---------------------------------~~~~~~~ad~l~-~p~~~~s~d~~lsiavihhlsT---~~RR~~~l~ 127 (293)
T KOG1331|consen 85 ---------------------------------GGDNVCRADALK-LPFREESFDAALSIAVIHHLST---RERRERALE 127 (293)
T ss_pred ---------------------------------CCceeehhhhhc-CCCCCCccccchhhhhhhhhhh---HHHHHHHHH
Confidence 12 456667766 6778899999999999998852 233468999
Q ss_pred HHHhhcCCCcEEEE
Q 047406 208 RIWKLLRPGGIFVL 221 (290)
Q Consensus 208 ~~~~~LkpgG~l~i 221 (290)
++.+.|+|||...+
T Consensus 128 e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 128 ELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHhcCCCceEE
Confidence 99999999999777
No 231
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.62 E-value=0.00062 Score=63.55 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=63.8
Q ss_pred CcEEEecCCCChhhH-HHHhHc-CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 64 KDCLDIGCNSGIITI-QIAQKF-NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~-~la~~~-~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+|+=||||+=-++. .+++.. ....|.++|+|+.+++.+++-+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~--------------------------------- 168 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS--------------------------------- 168 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------------------------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---------------------------------
Confidence 599999999865444 444443 355799999999999999886652
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
..++...+.|...|..+. ......||+|+..... .-..+...+++.++.+.++||..+++
T Consensus 169 --------------~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~lAalV-----g~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 169 --------------DLGLSKRMSFITADVLDV-TYDLKEYDVVFLAALV-----GMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp ----------------HH-SSEEEEES-GGGG--GG----SEEEE-TT------S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred --------------cccccCCeEEEecchhcc-ccccccCCEEEEhhhc-----ccccchHHHHHHHHHhhCCCCcEEEE
Confidence 134566799999998663 2234689999975443 11234678999999999999999999
Q ss_pred e
Q 047406 222 E 222 (290)
Q Consensus 222 ~ 222 (290)
.
T Consensus 229 R 229 (276)
T PF03059_consen 229 R 229 (276)
T ss_dssp E
T ss_pred e
Confidence 5
No 232
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00051 Score=63.56 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=47.5
Q ss_pred cccCCCCCchh-hHHhhh--hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 42 RIGQGLNEDPR-FKVLKK--EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 42 ~~~~~~~~~~~-l~~l~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
+++|+...+.. ++.+.. ...++.+|||||+|.|.+|..|++. +..|+++++|+..++..+...
T Consensus 7 ~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~ 72 (259)
T COG0030 7 RLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERF 72 (259)
T ss_pred CcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhc
Confidence 45566666644 232222 2345789999999999999999998 458999999999999888753
No 233
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.54 E-value=0.00034 Score=64.97 Aligned_cols=68 Identities=18% Similarity=0.371 Sum_probs=51.3
Q ss_pred ccccccCCCCCchhh-HHh--hhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 39 YGYRIGQGLNEDPRF-KVL--KKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 39 ~~~~~~~~~~~~~~l-~~l--~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
+.-.++|....++.. +.| .+.+.+...|||+|.|+|.++..|.+. +..|++++++|.++....+...+
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~g 102 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQG 102 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcC
Confidence 344556666666543 222 344578899999999999999999887 56999999999999988876543
No 234
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00011 Score=63.45 Aligned_cols=110 Identities=21% Similarity=0.221 Sum_probs=74.3
Q ss_pred cCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
..|.+||++|.| +|..++++|...+..+|..+|-++.+++..++.....
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n------------------------------ 77 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN------------------------------ 77 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc------------------------------
Confidence 578899999999 4667777788778889999999999988877754320
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecc-cccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQEN-FVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
+ -..+. .+.+...+ ..+........||.|+|...+ + + ++.-..+.+.|+.+|+|.|.
T Consensus 78 --------~-------~s~~t-sc~vlrw~~~~aqsq~eq~tFDiIlaADCl--F-f---dE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 78 --------M-------ASSLT-SCCVLRWLIWGAQSQQEQHTFDIILAADCL--F-F---DEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred --------c-------ccccc-eehhhHHHHhhhHHHHhhCcccEEEeccch--h-H---HHHHHHHHHHHHHHhCcccc
Confidence 0 01111 12222222 212222234589999998877 2 1 35567889999999999888
Q ss_pred EEEe
Q 047406 219 FVLE 222 (290)
Q Consensus 219 l~i~ 222 (290)
.++.
T Consensus 136 Al~f 139 (201)
T KOG3201|consen 136 ALLF 139 (201)
T ss_pred eeEe
Confidence 6664
No 235
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.52 E-value=0.00051 Score=59.75 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=75.7
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
..|.-|||+|.|+|-++..+..+.- +.+++++++|++-+....+...
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-------------------------------- 94 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-------------------------------- 94 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------------------------------
Confidence 4678999999999999999887653 4589999999999887766322
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccC----CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCC
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG----RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRP 215 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkp 215 (290)
...+..+|..+. .......||.|+|.--+ +++..+.-..+++++...|.+
T Consensus 95 ----------------------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl----l~~P~~~~iaile~~~~rl~~ 148 (194)
T COG3963 95 ----------------------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL----LNFPMHRRIAILESLLYRLPA 148 (194)
T ss_pred ----------------------CccccccchhhHHHHHhhcCCCeeeeEEecccc----ccCcHHHHHHHHHHHHHhcCC
Confidence 233444444431 11245679999996444 344556778999999999999
Q ss_pred CcEEEE
Q 047406 216 GGIFVL 221 (290)
Q Consensus 216 gG~l~i 221 (290)
||.++.
T Consensus 149 gg~lvq 154 (194)
T COG3963 149 GGPLVQ 154 (194)
T ss_pred CCeEEE
Confidence 999887
No 236
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.49 E-value=0.0027 Score=57.53 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=84.8
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.+|.+||-+|.++|.....++.--+ ...|+|++.|+...+....-...
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~------------------------------ 120 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK------------------------------ 120 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH------------------------------
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc------------------------------
Confidence 36889999999999988777776654 45899999999877666543332
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
..+|-..-.|.... +...-+..|+|++-=.. .++.+-++.++...|++|
T Consensus 121 ---------------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQ--------p~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 121 ---------------------RPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQ--------PDQARIAALNARHFLKPG 171 (229)
T ss_dssp ---------------------STTEEEEES-TTSGGGGTTTS--EEEEEEE-SS--------TTHHHHHHHHHHHHEEEE
T ss_pred ---------------------CCceeeeeccCCChHHhhcccccccEEEecCCC--------hHHHHHHHHHHHhhccCC
Confidence 23566777777652 11123589999973221 255567778888999999
Q ss_pred cEEEEeeCCCchhhhhhhhhhhhhccccccccCchh-HHH--HHHHHcCCeeeEeccC
Q 047406 217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKE-FQE--ILLDKIGFRTVEDIGS 271 (290)
Q Consensus 217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~ll~~~Gf~~v~~~~~ 271 (290)
|.+++..- ++.... .-.+++ |.+ ..|++.||++.+.+.-
T Consensus 172 G~~~i~iK-------a~siD~---------t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 172 GHLIISIK-------ARSIDS---------TADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp EEEEEEEE-------HHHH-S---------SSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred cEEEEEEe-------cCcccC---------cCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 99999531 111100 011111 111 1577789999988766
No 237
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0022 Score=59.69 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=74.4
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+.||.+|+|.|+|+|+++-.+++.... .+++..|+.+...+.|++.++.+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h----------------------------- 153 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH----------------------------- 153 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----------------------------
Confidence 479999999999999999998887643 48999999999999999988763
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccC-CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
++.+++.+..-|.-.. ....+..+|.|+.--- .+...+-.++.+|+.+|
T Consensus 154 -------------------gi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlP-----------aPw~AiPha~~~lk~~g 203 (314)
T KOG2915|consen 154 -------------------GIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLP-----------APWEAIPHAAKILKDEG 203 (314)
T ss_pred -------------------CCCcceEEEEeecccCCccccccccceEEEcCC-----------ChhhhhhhhHHHhhhcC
Confidence 3566777777776553 1222577899985322 23334455667888777
Q ss_pred EEEE
Q 047406 218 IFVL 221 (290)
Q Consensus 218 ~l~i 221 (290)
.-++
T Consensus 204 ~r~c 207 (314)
T KOG2915|consen 204 GRLC 207 (314)
T ss_pred ceEE
Confidence 4444
No 238
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.43 E-value=0.00073 Score=62.72 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=79.0
Q ss_pred CcEEEecCCCC--hhhHHHHhH-cCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 64 KDCLDIGCNSG--IITIQIAQK-FNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 64 ~~vLDiGcG~G--~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
...||||||-= ...=.+|+. .|..+|+-+|.+|-++..++..+...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------------------------------- 118 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------------------------------- 118 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------------------------------
Confidence 47999999932 233334443 46779999999999999888865430
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccC---CCC-------CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDS-------PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW 210 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~-------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~ 210 (290)
-.....+.+.|+++. +.. ...+.=.++...++||+. ++++...++..+.
T Consensus 119 ------------------~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~---D~~dp~~iv~~l~ 177 (267)
T PF04672_consen 119 ------------------PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVP---DDDDPAGIVARLR 177 (267)
T ss_dssp ------------------TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS----CGCTHHHHHHHHH
T ss_pred ------------------CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCC---CccCHHHHHHHHH
Confidence 011266777777662 110 113344667778888774 4578899999999
Q ss_pred hhcCCCcEEEEeeCCCchh-hhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeE
Q 047406 211 KLLRPGGIFVLEPQPWVSY-EKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE 267 (290)
Q Consensus 211 ~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~ 267 (290)
..|.||.+|++++...... .....+............+.+.+.++.++. ||++++
T Consensus 178 d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 178 DALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp CCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred HhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence 9999999999987643211 111223333333333344555444444554 777654
No 239
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.42 E-value=4.3e-05 Score=60.13 Aligned_cols=100 Identities=23% Similarity=0.238 Sum_probs=42.5
Q ss_pred EEecCCCChhhHHHHhHcCCc---eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 67 LDIGCNSGIITIQIAQKFNCR---SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 67 LDiGcG~G~~~~~la~~~~~~---~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
||+||..|..+..+++..... +++++|..+. .+.+...++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~----------------------------------- 44 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK----------------------------------- 44 (106)
T ss_dssp --------------------------EEEESS------------------------------------------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh-----------------------------------
Confidence 689999998888887755432 6999999986 2222222211
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
.++..++.+...+..+.++.- .+++|+|+.-..- ..+.....+..+.+.|+|||++++.
T Consensus 45 -------------~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H-------~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 45 -------------AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH-------SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES----------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -------------cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC-------CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 233446888888876532222 3789999963221 1245677889999999999999884
No 240
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.42 E-value=0.00049 Score=64.30 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=79.9
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.++.+|||+.+++|.=+..+++.+. ...|++.|+++..+...+.++...+
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----------------------------- 134 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----------------------------- 134 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----------------------------
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-----------------------------
Confidence 5789999999999999999999887 4589999999999999999887632
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEc------------hhhhhhhhcC----CchHH
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCL------------SVTKWIHLNW----GDDGL 202 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~------------~vl~~~~l~~----~~~~~ 202 (290)
.. .+.....|.....+. ....||.|++- ....|..-.. -...+
T Consensus 135 -------------------~~-~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q 194 (283)
T PF01189_consen 135 -------------------VF-NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQ 194 (283)
T ss_dssp --------------------S-SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHH
T ss_pred -------------------Cc-eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHH
Confidence 22 344444554442111 22358999881 1111210000 01234
Q ss_pred HHHHHHHHhhc----CCCcEEEEeeC
Q 047406 203 ITLFMRIWKLL----RPGGIFVLEPQ 224 (290)
Q Consensus 203 ~~~l~~~~~~L----kpgG~l~i~~~ 224 (290)
.++|.++.+.+ +|||+++.++-
T Consensus 195 ~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 195 REILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred HHHHHHHHHhhcccccCCCeEEEEec
Confidence 79999999999 99999999764
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.40 E-value=0.00064 Score=55.87 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=40.1
Q ss_pred cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
++||+|||.|..+..+++..+..+|+++|.++.+.+.++.++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH
Confidence 58999999999999999987767899999999999999998765
No 242
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.29 E-value=0.00017 Score=65.18 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=62.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
....|+|..||.|..+++.|..++ .|+++|+||.-+.-|+.|++-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei--------------------------------- 138 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV--------------------------------- 138 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee---------------------------------
Confidence 567899999999999999999855 799999999999999998765
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILC 186 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~ 186 (290)
.++.++|.|.++|+++. ++.....+|+|+.
T Consensus 139 ---------------YGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 139 ---------------YGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred ---------------ecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 56677899999999873 4444455677775
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.23 E-value=0.0023 Score=61.52 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.2
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS 96 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~ 96 (290)
+.+|+++|||||++|.++..++++ +..|+++|.++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh
Confidence 357899999999999999999887 34999999654
No 244
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.15 E-value=0.001 Score=58.98 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred hhhHHhhhhc--cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406 51 PRFKVLKKEW--FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI 128 (290)
Q Consensus 51 ~~l~~l~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (290)
+|+..+...+ .....+.|+|+|+|+++...|.. ..+|++++.+|...+.|++|+..
T Consensus 19 eRlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v-------------------- 76 (252)
T COG4076 19 ERLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHV-------------------- 76 (252)
T ss_pred HHHHHHHHHHHHHhhhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCC--------------------
Confidence 5555543322 23478999999999998875554 55899999999999999887532
Q ss_pred hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHH
Q 047406 129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMR 208 (290)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~ 208 (290)
++ ..++++..+|..+ +.+ ...|+|+|-.. .-.- -.+.+..++..
T Consensus 77 ----------------------------~g-~~n~evv~gDA~~-y~f--e~ADvvicEml-DTaL---i~E~qVpV~n~ 120 (252)
T COG4076 77 ----------------------------PG-DVNWEVVVGDARD-YDF--ENADVVICEML-DTAL---IEEKQVPVINA 120 (252)
T ss_pred ----------------------------CC-CcceEEEeccccc-ccc--cccceeHHHHh-hHHh---hcccccHHHHH
Confidence 22 3468899999877 333 56799998321 1000 13556788888
Q ss_pred HHhhcCCCcEEEE
Q 047406 209 IWKLLRPGGIFVL 221 (290)
Q Consensus 209 ~~~~LkpgG~l~i 221 (290)
+...|+.++.++=
T Consensus 121 vleFLr~d~tiiP 133 (252)
T COG4076 121 VLEFLRYDPTIIP 133 (252)
T ss_pred HHHHhhcCCcccc
Confidence 8889999988765
No 245
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0019 Score=64.57 Aligned_cols=46 Identities=26% Similarity=0.503 Sum_probs=41.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..++.++|+-||||.++..+|+. ..+|+|+++++++++.|++++..
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchh
Confidence 67789999999999999999886 45899999999999999998764
No 246
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.00 E-value=0.0066 Score=50.61 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=41.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+..+|+|+|||.|.++..++..+ +..+|+++|.++..++.+......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 456899999999999999998822 466999999999999999887665
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.02 Score=51.34 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=88.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.+|.+||=+|..+|.-...++.-.+...|+|++.|+........-+..
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-------------------------------- 122 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-------------------------------- 122 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------------------------------
Confidence 688999999999998888888776656799999999888776654433
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
..++-....|.... +..-=+..|+|++--. ..++.+-+..+...-|+++|.
T Consensus 123 -------------------R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA--------Qp~Qa~I~~~Na~~FLk~~G~ 175 (231)
T COG1889 123 -------------------RPNIIPILEDARKPEKYRHLVEKVDVIYQDVA--------QPNQAEILADNAEFFLKKGGY 175 (231)
T ss_pred -------------------CCCceeeecccCCcHHhhhhcccccEEEEecC--------CchHHHHHHHHHHHhcccCCe
Confidence 23455666666542 1111245888886322 124446667788889999998
Q ss_pred EEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHH---HHHHcCCeeeEeccC
Q 047406 219 FVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEI---LLDKIGFRTVEDIGS 271 (290)
Q Consensus 219 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ll~~~Gf~~v~~~~~ 271 (290)
+++..- ++.. ..+-.+++..+. -|+..||++.+.+.-
T Consensus 176 ~~i~iK-------ArSI---------dvT~dp~~vf~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 176 VVIAIK-------ARSI---------DVTADPEEVFKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred EEEEEE-------eecc---------cccCCHHHHHHHHHHHHHhcCceeeEEecc
Confidence 877421 1100 001122222221 477899999998876
No 248
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.92 E-value=0.006 Score=55.25 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=75.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..|.|||.||-|-|++...+ |+.+...=+-++..|++++.-+.+.+.
T Consensus 100 tkggrvLnVGFGMgIidT~i-Qe~~p~~H~IiE~hp~V~krmr~~gw~-------------------------------- 146 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFI-QEAPPDEHWIIEAHPDVLKRMRDWGWR-------------------------------- 146 (271)
T ss_pred hCCceEEEeccchHHHHHHH-hhcCCcceEEEecCHHHHHHHHhcccc--------------------------------
Confidence 67899999999999998876 445666678899999999988876443
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
...++....+-+.+..+ .+++.||-|+---... + -+++..+...+.++|||+|++
T Consensus 147 ------------------ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e---~---yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 147 ------------------EKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSE---L---YEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred ------------------cccceEEEecchHhhhccccccCcceeEeechhh---H---HHHHHHHHHHHhhhcCCCceE
Confidence 12345455554444322 2567899998632211 1 167888899999999999999
Q ss_pred EEe
Q 047406 220 VLE 222 (290)
Q Consensus 220 ~i~ 222 (290)
-+-
T Consensus 203 Syf 205 (271)
T KOG1709|consen 203 SYF 205 (271)
T ss_pred EEe
Confidence 873
No 249
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.92 E-value=0.0056 Score=59.26 Aligned_cols=114 Identities=11% Similarity=0.169 Sum_probs=78.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.-.++|-+|.|.|.....+.+ +| ..+|+-+|++|.+++.++.+..... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~---~------------------------- 338 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRA---L------------------------- 338 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhh---h-------------------------
Confidence 3447899999999999999866 56 5599999999999999986543300 0
Q ss_pred hHHHHHHhhhcCCCccccCc-CcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH-----HHHHHHHHhhc
Q 047406 140 AAQEEKKAISRNCSPAERNL-FDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL-----ITLFMRIWKLL 213 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~-----~~~l~~~~~~L 213 (290)
.+... ..++.+...|..+-+....+.||+|+.-.- +-..+.. ..+..-+.+.|
T Consensus 339 ---------------N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~------DP~tps~~rlYS~eFY~ll~~~l 397 (508)
T COG4262 339 ---------------NQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP------DPSTPSIGRLYSVEFYRLLSRHL 397 (508)
T ss_pred ---------------ccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC------CCCCcchhhhhhHHHHHHHHHhc
Confidence 00111 235777888876644455678999996210 0001111 46778889999
Q ss_pred CCCcEEEEeeC
Q 047406 214 RPGGIFVLEPQ 224 (290)
Q Consensus 214 kpgG~l~i~~~ 224 (290)
+++|+++++.+
T Consensus 398 ~e~Gl~VvQag 408 (508)
T COG4262 398 AETGLMVVQAG 408 (508)
T ss_pred CcCceEEEecC
Confidence 99999999643
No 250
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.88 E-value=0.027 Score=51.62 Aligned_cols=134 Identities=17% Similarity=0.124 Sum_probs=77.2
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
....|++||-+|=..- .++.+|....+.+|+.+|+++..++..+.....
T Consensus 41 gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~------------------------------ 89 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEE------------------------------ 89 (243)
T ss_dssp T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH------------------------------
T ss_pred CcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH------------------------------
Confidence 3468999999984443 344445445567999999999999998887665
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.++ .+.....|+++.+|.. .+.||++++-.. |..+++.-++++....|+..|
T Consensus 90 ------------------~gl--~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-------yT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 90 ------------------EGL--PIEAVHYDLRDPLPEELRGKFDVFFTDPP-------YTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp ------------------HT----EEEE---TTS---TTTSS-BSEEEE----------SSHHHHHHHHHHHHHTB-STT
T ss_pred ------------------cCC--ceEEEEecccccCCHHHhcCCCEEEeCCC-------CCHHHHHHHHHHHHHHhCCCC
Confidence 233 3889999999876653 589999998433 345788899999999999766
Q ss_pred -EEEEeeCCCchhhhhhhhhhhhhccccccccCc---hhHHHHHHHHcCCeeeEeccC
Q 047406 218 -IFVLEPQPWVSYEKNRRVSETTATNFQNIKLYP---KEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 218 -~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
..+++..... ..+ .++++ ++-+.||.+.+++..
T Consensus 143 ~~gy~~~~~~~--------------------~s~~~~~~~Q~-~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 143 CAGYFGFTHKE--------------------ASPDKWLEVQR-FLLEMGLVITDIIPD 179 (243)
T ss_dssp -EEEEEE-TTT----------------------HHHHHHHHH-HHHTS--EEEEEEEE
T ss_pred ceEEEEEecCc--------------------CcHHHHHHHHH-HHHHCCcCHHHHHhh
Confidence 5566433111 011 13444 455899988877654
No 251
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.79 E-value=0.011 Score=52.79 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=81.2
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCC-ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchh
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNC-RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKN 137 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (290)
.+++|.+|+|+-.|.|.++..++...+. ..|++.-..+...-.....-+. .
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~---------~------------------- 96 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRL---------N------------------- 96 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhh---------h-------------------
Confidence 4578999999999999999999887653 2555554333211111110000 0
Q ss_pred hhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhc-CCchHHHHHHHHHHhhcCCC
Q 047406 138 VTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLN-WGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~-~~~~~~~~~l~~~~~~Lkpg 216 (290)
+++++ ....+.+........ +. +.+..|+++....-|-+|.- .......++...+.+.||||
T Consensus 97 -~~~~e--------------~~~aN~e~~~~~~~A-~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG 159 (238)
T COG4798 97 -AAARE--------------PVYANVEVIGKPLVA-LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG 159 (238)
T ss_pred -hhhhh--------------hhhhhhhhhCCcccc-cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence 00000 001122222222222 12 34556666654333222211 12456688999999999999
Q ss_pred cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeE
Q 047406 217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVE 267 (290)
Q Consensus 217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~ 267 (290)
|++.++.+.- ......++... -.++.+....+ ..+++||+..-
T Consensus 160 Gv~~V~dH~a---~pG~~~~dt~~----~~ri~~a~V~a-~veaaGFkl~a 202 (238)
T COG4798 160 GVYLVEDHRA---DPGSGLSDTIT----LHRIDPAVVIA-EVEAAGFKLEA 202 (238)
T ss_pred cEEEEEeccc---cCCCChhhhhh----hcccChHHHHH-HHHhhcceeee
Confidence 9999965411 11111111111 11345555555 68899998663
No 252
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.012 Score=55.79 Aligned_cols=180 Identities=13% Similarity=0.151 Sum_probs=95.3
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
..+||--|||.|.++..||-... .+-|-+.|--|+-...--+.. ... .-.+.--|++---+-.- .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~-~~~------~nq~~IYPfIh~~sn~~------~ 215 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNY-CKQ------ENQFTIYPFIHQYSNSL------S 215 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHh-hcc------CCcEEEEeeeecccccc------c
Confidence 46899999999999999998754 455667766665444332211 000 01111112221111000 0
Q ss_pred HHHHhhhcCCCcc----ccCcCcceeEeecccccCCCC--CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 143 EEKKAISRNCSPA----ERNLFDIVSFKQENFVHGRDS--PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 143 ~~~~~~~~~~~~~----~~~~~~~i~~~~~d~~~~~~~--~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
.+-.-++.+..+. .+......+...+||++-.+. ..+.||+|+..+-+. ........++.+.++|+||
T Consensus 216 ~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID------Ta~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 216 RDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID------TAHNILEYIDTIYKILKPG 289 (369)
T ss_pred cccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee------chHHHHHHHHHHHHhccCC
Confidence 0000011111111 122223344466888874333 346799999864432 3356788899999999999
Q ss_pred cEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEec
Q 047406 217 GIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDI 269 (290)
Q Consensus 217 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~ 269 (290)
|+.+=..|-.-.+.... ...+-..+.+..++..+ +++.-||++++.-
T Consensus 290 GvWiNlGPLlYHF~d~~-----g~~~~~siEls~edl~~-v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 290 GVWINLGPLLYHFEDTH-----GVENEMSIELSLEDLKR-VASHRGFEVEKER 336 (369)
T ss_pred cEEEeccceeeeccCCC-----CCcccccccccHHHHHH-HHHhcCcEEEEee
Confidence 98765333111111000 00122245566677777 7889999988664
No 253
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.76 E-value=0.018 Score=56.61 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=43.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIV 110 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~ 110 (290)
.+|.||||+.+-+|.=+..+|..+.+. .|++.|.+...+.....++..++
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG 290 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG 290 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC
Confidence 588999999999999888888887653 78999999999999999988754
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.68 E-value=0.014 Score=52.52 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=41.5
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
....+.|||||.|.+.+.++..+|+..|+|.+|--.+-+..+..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~A 106 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQA 106 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999988888888877765
No 255
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.64 E-value=0.0086 Score=54.13 Aligned_cols=152 Identities=13% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCC--ceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch-hh
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNC--RSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK-NV 138 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~--~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 138 (290)
.+.++||-.||+|.+.-.+.-..+. ..|+|.||++++++.|++|+.....++...-.+....... .+|..+.. -.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e--~~~kps~~eAl 128 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE--QYGKPSHAEAL 128 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--HH--HHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH--HcCCchHHHHH
Confidence 3469999999999887777666554 3899999999999999999976554444432222221111 11111110 00
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCC----CCCCceeEEEEc----hhhhhhhhcCCchHHHHHHHHHH
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD----SPEKYYDAILCL----SVTKWIHLNWGDDGLITLFMRIW 210 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~fD~I~~~----~vl~~~~l~~~~~~~~~~l~~~~ 210 (290)
-||.. -..+ -.+.... ......+.|..+..+ ......|+|+.- ....|-.- .+.....++|..+.
T Consensus 129 ~sA~R-L~~~----l~~~g~~-~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~-~~~~p~~~ml~~l~ 201 (246)
T PF11599_consen 129 ESADR-LRER----LAAEGGD-EPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGE-GSGGPVAQMLNSLA 201 (246)
T ss_dssp HHHHH-HHHH----HHHTTSS---EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS----HHHHHHHHHHHH
T ss_pred HHHHH-HHHH----HHhcCCC-CchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCC-CCCCcHHHHHHHHH
Confidence 00000 0000 0001111 125666777655211 122346999872 33444421 13355689999999
Q ss_pred hhcCCCcEEEEe
Q 047406 211 KLLRPGGIFVLE 222 (290)
Q Consensus 211 ~~LkpgG~l~i~ 222 (290)
.+|-++.+++++
T Consensus 202 ~vLp~~sVV~v~ 213 (246)
T PF11599_consen 202 PVLPERSVVAVS 213 (246)
T ss_dssp CCS-TT-EEEEE
T ss_pred hhCCCCcEEEEe
Confidence 999666666663
No 256
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.56 E-value=0.091 Score=52.88 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRKIV 110 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~~~ 110 (290)
+..+|+|..||+|......+.... ...++|.|+++.....|+.++-.++
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 567999999999988777666553 2579999999999999999887743
No 257
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.44 E-value=0.0099 Score=54.69 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=37.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
.++..|+|||+|.|.++..|+... .+++++|+++..++..+..
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~ 71 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKER 71 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHH
Confidence 378999999999999999999874 6999999999888777763
No 258
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.43 E-value=0.011 Score=55.92 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=42.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.++..++|.-+|.|..+..++...+...|+|+|.++.+++.+++.+..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 467899999999999999999887667999999999999999987654
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.20 E-value=0.021 Score=48.21 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=52.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEee
Q 047406 88 SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQ 167 (290)
Q Consensus 88 ~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 167 (290)
+|+|.||-+.+++.++..+.. .++.+++.+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~------------------------------------------------~~~~~~v~li~ 32 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE------------------------------------------------AGLEDRVTLIL 32 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH------------------------------------------------TT-GSGEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHh------------------------------------------------cCCCCcEEEEE
Confidence 589999999999999998876 22333466655
Q ss_pred cccccCCC-CCCCceeEEEEchhhhhhhhcCCchH-------HHHHHHHHHhhcCCCcEEEEeeC
Q 047406 168 ENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDG-------LITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 168 ~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.+-.+... .+.+++|+++.+... |..++.. -...++.+.++|+|||++.+..-
T Consensus 33 ~sHe~l~~~i~~~~v~~~iFNLGY----LPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 33 DSHENLDEYIPEGPVDAAIFNLGY----LPGGDKSITTKPETTLKALEAALELLKPGGIITIVVY 93 (140)
T ss_dssp S-GGGGGGT--S--EEEEEEEESB-----CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCHHHHHhhCccCCcCEEEEECCc----CCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEe
Confidence 54333111 122578988865332 2334332 35788999999999999999643
No 260
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.09 E-value=0.028 Score=56.08 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=80.0
Q ss_pred hhhhccCCC-cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCc
Q 047406 56 LKKEWFEGK-DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGL 134 (290)
Q Consensus 56 l~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (290)
|.++..+-. ++|-+|||+-.+...+-.. +...|+.+|+|+-+++........
T Consensus 41 i~~~~~p~~~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-------------------------- 93 (482)
T KOG2352|consen 41 IMKYLSPSDFKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-------------------------- 93 (482)
T ss_pred HHHhhchhhceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc--------------------------
Confidence 334434444 9999999999888876543 445899999999888776552110
Q ss_pred chhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcC----CchHHHHHHHHHH
Q 047406 135 EKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNW----GDDGLITLFMRIW 210 (290)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~----~~~~~~~~l~~~~ 210 (290)
...-+.+...|... +.+++.+||+|+--..++.+-.+- ........+..+.
T Consensus 94 ------------------------~~~~~~~~~~d~~~-l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVs 148 (482)
T KOG2352|consen 94 ------------------------ERPEMQMVEMDMDQ-LVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVS 148 (482)
T ss_pred ------------------------CCcceEEEEecchh-ccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHH
Confidence 12236777777766 577889999999987776432211 1123457889999
Q ss_pred hhcCCCcEEEEe
Q 047406 211 KLLRPGGIFVLE 222 (290)
Q Consensus 211 ~~LkpgG~l~i~ 222 (290)
++|+|||+++..
T Consensus 149 rvl~~~gk~~sv 160 (482)
T KOG2352|consen 149 RVLAPGGKYISV 160 (482)
T ss_pred HHhccCCEEEEE
Confidence 999999997774
No 261
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.95 E-value=0.032 Score=54.40 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=72.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
..+.++||.=+|+|.=++..+.+.+ ...|++-|+|+++++..+.|+..
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~------------------------------- 96 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL------------------------------- 96 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH-------------------------------
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh-------------------------------
Confidence 3456999999999999999998854 45899999999999999999876
Q ss_pred hHHHHHHhhhcCCCccccCcCc-ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 140 AAQEEKKAISRNCSPAERNLFD-IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
+++.. .+.+...|....+......||+|=. .- +| ....++....+.++.||+
T Consensus 97 -----------------N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-------DP-fG--Sp~pfldsA~~~v~~gGl 149 (377)
T PF02005_consen 97 -----------------NGLEDERIEVSNMDANVLLYSRQERFDVIDL-------DP-FG--SPAPFLDSALQAVKDGGL 149 (377)
T ss_dssp -----------------CT-SGCCEEEEES-HHHHHCHSTT-EEEEEE----------SS----HHHHHHHHHHEEEEEE
T ss_pred -----------------ccccCceEEEehhhHHHHhhhccccCCEEEe-------CC-CC--CccHhHHHHHHHhhcCCE
Confidence 44444 4667666654422224578999874 11 12 235788899999999999
Q ss_pred EEEee
Q 047406 219 FVLEP 223 (290)
Q Consensus 219 l~i~~ 223 (290)
|.+..
T Consensus 150 l~vTa 154 (377)
T PF02005_consen 150 LCVTA 154 (377)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99954
No 262
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.058 Score=48.00 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=29.7
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHc-CCceEEEEeC
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKF-NCRSILGIDI 94 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~i~g~Di 94 (290)
+.++.+|||+||.+|+++...-++. |..-|.|+|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 4678999999999999988877766 5567999998
No 263
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.83 E-value=0.014 Score=52.32 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=56.8
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHc----CCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKF----NCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI 128 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~----~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (290)
+..+.-++ +...|+|+|.-.|.-++.+|..+ +..+|+|+|++-.........
T Consensus 24 ~qeli~~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e----------------------- 79 (206)
T PF04989_consen 24 YQELIWEL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE----------------------- 79 (206)
T ss_dssp HHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG-----------------------
T ss_pred HHHHHHHh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh-----------------------
Confidence 44555553 56899999999997776665433 456999999954222111000
Q ss_pred hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC-----CCCCCCceeEEEEchhhhhhhhcCCchHHH
Q 047406 129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-----RDSPEKYYDAILCLSVTKWIHLNWGDDGLI 203 (290)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~ 203 (290)
.-.+..+|++.++|..+. .......++-++.....+|.+ +...
T Consensus 80 ---------------------------~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~-----~hvl 127 (206)
T PF04989_consen 80 ---------------------------SHPMSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTH-----EHVL 127 (206)
T ss_dssp ---------------------------G----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS---------SSHH
T ss_pred ---------------------------hccccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccH-----HHHH
Confidence 011235789999987652 111112233333222322222 5567
Q ss_pred HHHHHHHhhcCCCcEEEEeeC
Q 047406 204 TLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 204 ~~l~~~~~~LkpgG~l~i~~~ 224 (290)
..|+....++++|++++++..
T Consensus 128 ~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 128 AELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp HHHHHHHHT--TT-EEEETSH
T ss_pred HHHHHhCccCCCCCEEEEEec
Confidence 888889999999999999643
No 264
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.76 E-value=0.049 Score=52.35 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=39.2
Q ss_pred hccCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406 59 EWFEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 59 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
...+|.+|+-+|+| .|..++++|+.+. .+|+++|.|++-++.|++-
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence 35789999999998 3478999999777 7999999999999999873
No 265
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.73 E-value=0.042 Score=50.65 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=35.9
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
++..+|+|||||-=-++.......+...++|+||++..++.....+..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~ 151 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV 151 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 456899999999887777665555567999999999999999887655
No 266
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.044 Score=52.98 Aligned_cols=112 Identities=15% Similarity=0.256 Sum_probs=63.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+...++||+|.|+|.-...+-..+|.. +++-++.|+..-+....-...
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n------------------------------- 160 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN------------------------------- 160 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh-------------------------------
Confidence 345789999999998877666666643 566677776444333322111
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccC-CCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG-RDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
..+ ........|+... ++. ..+.|++++...-+ ++ +.....+...++.+|.++.|||
T Consensus 161 ------------v~t------~~td~r~s~vt~dRl~lp~ad~ytl~i~~~eL--l~-d~~ek~i~~~ie~lw~l~~~gg 219 (484)
T COG5459 161 ------------VST------EKTDWRASDVTEDRLSLPAADLYTLAIVLDEL--LP-DGNEKPIQVNIERLWNLLAPGG 219 (484)
T ss_pred ------------ccc------ccCCCCCCccchhccCCCccceeehhhhhhhh--cc-ccCcchHHHHHHHHHHhccCCC
Confidence 000 0111112222211 122 23567777665544 22 2233344569999999999999
Q ss_pred EEEEeeC
Q 047406 218 IFVLEPQ 224 (290)
Q Consensus 218 ~l~i~~~ 224 (290)
.|+|..+
T Consensus 220 ~lVivEr 226 (484)
T COG5459 220 HLVIVER 226 (484)
T ss_pred eEEEEeC
Confidence 9999543
No 267
>PRK10742 putative methyltransferase; Provisional
Probab=95.53 E-value=0.047 Score=50.37 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=39.9
Q ss_pred cCCC--cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGK--DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~--~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|. +|||+-+|+|..+..++.. ++ +|+++|-++......+.++..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~-G~-~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV-GC-RVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHH
Confidence 4666 8999999999999998876 44 699999999999999888776
No 268
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.42 E-value=0.092 Score=48.41 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=70.8
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
...||++|+|+|..++..|.. ....+..+|+ +..+...+.+......
T Consensus 87 ~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~-~~~~~~L~~~~~~~~~------------------------------- 133 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL-LGAEVVLTDL-PKVVENLKFNRDKNNI------------------------------- 133 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH-hcceeccCCc-hhhHHHHHHhhhhhhh-------------------------------
Confidence 346999999999888876664 3458999998 5555555554322100
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCC--CCCc-eeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS--PEKY-YDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~-fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
+.+++...+.....++.+.... .... +|+|+...+. +.......++.-+..+|..++++
T Consensus 134 ------------~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvv------y~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 134 ------------ALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVV------YEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred ------------hhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeee------ecCCcchhHHHHHHHHHhcCCeE
Confidence 0022222455666666553211 1233 8999998886 23466788888899999999977
Q ss_pred EEee
Q 047406 220 VLEP 223 (290)
Q Consensus 220 ~i~~ 223 (290)
++..
T Consensus 196 ~l~~ 199 (248)
T KOG2793|consen 196 FLAY 199 (248)
T ss_pred EEEE
Confidence 7754
No 269
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.32 E-value=0.093 Score=49.42 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=35.2
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||-.|||. |..++++|+..+...|+++|.+++.++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 4688999999874 5677778887766579999999998888765
No 270
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.30 E-value=0.21 Score=48.47 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=38.8
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCc----eEEEEeCCHHHHHHHHHHH
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCR----SILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~----~i~g~Dis~~~l~~a~~~~ 106 (290)
.+.++.+|||+...+|.=+.++.+..-+. .|++=|+++..+......+
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~ 203 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL 203 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH
Confidence 35789999999999999887777654433 7899999998888877765
No 271
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.11 E-value=0.033 Score=50.98 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=36.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
++.++||||.|.-.+--.+-.+.-.++.+|+|+|+.+++.|+..+..
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~ 124 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISA 124 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHc
Confidence 56789999999775533333332357999999999999999998765
No 272
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.96 E-value=0.24 Score=51.42 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=51.7
Q ss_pred ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhh
Q 047406 162 IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT 239 (290)
Q Consensus 162 ~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 239 (290)
.+++..+|+.+.++.....+|+++.-.-.- . ..+.+ ..+|+++.++++|||+++-
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP----~-~np~~W~~~~~~~l~~~~~~~~~~~t------------------ 204 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAP----A-KNPDMWSPNLFNALARLARPGATLAT------------------ 204 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCC----c-cChhhccHHHHHHHHHHhCCCCEEEE------------------
Confidence 466777887765443345699999632110 0 01222 6899999999999999987
Q ss_pred hccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 240 ATNFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
++....++.-|..+||++.+.-+
T Consensus 205 --------~t~a~~vr~~l~~~GF~v~~~~~ 227 (662)
T PRK01747 205 --------FTSAGFVRRGLQEAGFTVRKVKG 227 (662)
T ss_pred --------eehHHHHHHHHHHcCCeeeecCC
Confidence 33455566678889998766533
No 273
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.70 E-value=0.092 Score=50.31 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=39.6
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
.++.+|+-+|||+ |..++.+++.++...|+++|.+++.++.|++.
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 3445899999998 88889999999888999999999999999873
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.43 E-value=0.26 Score=49.95 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=37.3
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+|+-+|||. |..++..|+.+++ .|+++|.+++.++.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 4688999999997 7778888888776 79999999999998876
No 275
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.87 E-value=0.9 Score=42.13 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=33.4
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.+++|+.||.|..+.-+.+. +...++++|+++.+++..+.|.
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred CcEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhC
Confidence 37999999999998877654 3346789999999988877754
No 276
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.85 E-value=0.26 Score=48.25 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=37.2
Q ss_pred eecccccCCCCCCCceeEEEEchhhhhhhh-----------cCC---------c------------hHHHHHHHHHHhhc
Q 047406 166 KQENFVHGRDSPEKYYDAILCLSVTKWIHL-----------NWG---------D------------DGLITLFMRIWKLL 213 (290)
Q Consensus 166 ~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l-----------~~~---------~------------~~~~~~l~~~~~~L 213 (290)
..+.|... -+|.++.|+++|...+||+.- .|. . .++..+|+.=.+-|
T Consensus 149 vpGSFY~R-LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~EL 227 (386)
T PLN02668 149 VPGSFYRR-LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEM 227 (386)
T ss_pred cCcccccc-ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455542 457899999999999999751 010 0 12234444445669
Q ss_pred CCCcEEEEee
Q 047406 214 RPGGIFVLEP 223 (290)
Q Consensus 214 kpgG~l~i~~ 223 (290)
.|||.+++..
T Consensus 228 vpGG~mvl~~ 237 (386)
T PLN02668 228 KRGGAMFLVC 237 (386)
T ss_pred ccCcEEEEEE
Confidence 9999999964
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.80 E-value=0.16 Score=44.16 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=32.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+|..|||.-||+|..+....+. +++.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 68899999999999987764433 5789999999999998864
No 278
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.39 E-value=0.19 Score=45.93 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=51.4
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
.+|||.-+|-|.-+..+|.. ++ +|+++|-||-........+...... . +
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G~-~V~~lErspvia~Ll~dGL~r~~~~-~--------------------~-------- 125 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-GC-KVTGLERSPVIAALLKDGLKRAQQD-P--------------------E-------- 125 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHS-T--------------------T--------
T ss_pred CEEEECCCcchHHHHHHHcc-CC-eEEEEECCHHHHHHHHHHHHHHHhC-c--------------------H--------
Confidence 38999999999999988864 44 8999999998877777766652110 0 0
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhh
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVT 190 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl 190 (290)
+ ......+|++...|..+.+..+..+||+|++-.+.
T Consensus 126 -~----------~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 126 -L----------LAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -T----------HHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S-
T ss_pred -h----------HHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCC
Confidence 0 01112469999999888666667899999985554
No 279
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.38 E-value=0.25 Score=46.75 Aligned_cols=117 Identities=16% Similarity=0.105 Sum_probs=78.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
+..+++|-||-|.|.+....+++-..-+|.-+|++...++..++....+.
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la------------------------------ 169 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLA------------------------------ 169 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHh------------------------------
Confidence 45689999999999988887776222378999999999999999876531
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
|+ --..++....+|....+. ...++||+|+.-..=- + ...-.-=+...+..+.+.|++||++
T Consensus 170 -----------~g----y~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdp-v-gpa~~lf~~~~~~~v~~aLk~dgv~ 232 (337)
T KOG1562|consen 170 -----------CG----YEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDP-V-GPACALFQKPYFGLVLDALKGDGVV 232 (337)
T ss_pred -----------cc----cCCCceEEEeccHHHHHHHhccCCceEEEEecCCc-c-chHHHHHHHHHHHHHHHhhCCCcEE
Confidence 11 112346666667544322 2468999999731100 0 0000011367888899999999999
Q ss_pred EEeeC
Q 047406 220 VLEPQ 224 (290)
Q Consensus 220 ~i~~~ 224 (290)
++...
T Consensus 233 ~~q~e 237 (337)
T KOG1562|consen 233 CTQGE 237 (337)
T ss_pred EEecc
Confidence 99654
No 280
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.23 E-value=0.059 Score=46.75 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=41.2
Q ss_pred eEeecccccCCCCCCCceeEEEEchhhhhhhhc--C---CchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 164 SFKQENFVHGRDSPEKYYDAILCLSVTKWIHLN--W---GDDGLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 164 ~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~--~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
++...||...+..-.++||++.|..++++..|- + +..+=.+.+.++.++|||||.|++..|
T Consensus 47 si~p~df~~~~~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 47 SILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred cccHHHHHHHHHHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 344455554333345789999999888764432 1 122225778889999999999999765
No 281
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.20 E-value=0.48 Score=45.39 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=17.8
Q ss_pred eEeecccccCCCCCCCceeEEEEchhhhhhh
Q 047406 164 SFKQENFVHGRDSPEKYYDAILCLSVTKWIH 194 (290)
Q Consensus 164 ~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~ 194 (290)
.-..+.|... -.|.++.|+++|...+||+.
T Consensus 92 ~gvpgSFy~r-LfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 92 SGVPGSFYGR-LFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EEEES-TTS---S-TT-EEEEEEES-TTB-S
T ss_pred EecCchhhhc-cCCCCceEEEEEechhhhcc
Confidence 3345666653 45789999999999999964
No 282
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.70 E-value=0.62 Score=43.34 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=33.1
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.++.++|-+|||. |..++++|+.++...|+++|.+++.++.|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 4677899999875 677788888877766888999887766554
No 283
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.67 E-value=0.2 Score=50.27 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=77.1
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
..+.+|||.=|++|.-++..|.+.++. +|++-|.++.+++..+.++..
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~------------------------------- 156 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL------------------------------- 156 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh-------------------------------
Confidence 567899999999999999999988754 899999999999999998876
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccC---CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
+...+.++....|.... .+.....||+|=. .-+ |. .-.+|....+.++.|
T Consensus 157 -----------------N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL-------DPy-Gs--~s~FLDsAvqav~~g 209 (525)
T KOG1253|consen 157 -----------------NGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL-------DPY-GS--PSPFLDSAVQAVRDG 209 (525)
T ss_pred -----------------cCchhhcccccchHHHHHHhccccccccceEec-------CCC-CC--ccHHHHHHHHHhhcC
Confidence 22333455555554331 2234578999873 212 22 246778888999999
Q ss_pred cEEEEeeC
Q 047406 217 GIFVLEPQ 224 (290)
Q Consensus 217 G~l~i~~~ 224 (290)
|+|.+..-
T Consensus 210 GLL~vT~T 217 (525)
T KOG1253|consen 210 GLLCVTCT 217 (525)
T ss_pred CEEEEEec
Confidence 99999543
No 284
>PRK11524 putative methyltransferase; Provisional
Probab=92.66 E-value=0.32 Score=45.25 Aligned_cols=46 Identities=24% Similarity=0.170 Sum_probs=39.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|..|||.-||||.-++. |.+. +++.+|+|++++.++.|...+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~A-A~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAV-AKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHH-HHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 6899999999999998776 4433 67899999999999999998754
No 285
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=0.072 Score=46.05 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406 173 GRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQP 225 (290)
Q Consensus 173 ~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (290)
..++.+.+.|+|+|..++.|+.+ +.....++.+++.|+|||+|-+..+.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~----~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTY----DEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhH----HHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 35667789999999999977654 56678899999999999999996543
No 286
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.39 E-value=0.32 Score=48.46 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=36.5
Q ss_pred cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
-+||||+|+|.++++.+.. ++.+|++++.-..+.+.|++-..+
T Consensus 69 ~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~k 111 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHK 111 (636)
T ss_pred EEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhc
Confidence 5899999999998886665 466899999999999999886655
No 287
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.26 E-value=0.73 Score=44.82 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..+|+|.=+|+|+=++.+|.+.+...++.-|+||++++..+.|++.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~ 98 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL 98 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh
Confidence 6899999999999999999988776899999999999999999876
No 288
>PRK13699 putative methylase; Provisional
Probab=92.14 E-value=0.47 Score=42.94 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=39.5
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
-.+|..|||.-||+|..+....+ . ..+.+|+|+++...+.+.+.+..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~-~-~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQ-S-GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHH-c-CCCEEEEecCHHHHHHHHHHHHH
Confidence 35889999999999998776443 3 56899999999999999888765
No 289
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.13 E-value=0.2 Score=47.64 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=40.3
Q ss_pred hhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406 51 PRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR 107 (290)
Q Consensus 51 ~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~ 107 (290)
+.++.+.. .++...+|.--|.|.++..+++..+..+++|+|.|+.+++.|.+.+.
T Consensus 11 Evl~~L~~--~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 11 EVLEALNP--KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp HHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred HHHHhhCc--CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 34444432 47789999999999999999998888899999999999999987554
No 290
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.77 E-value=0.58 Score=44.59 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=34.7
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..+.++|+..+...|+++|.++..++.++.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 45788999999764 5667777777665479999999988887754
No 291
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.65 E-value=0.79 Score=43.40 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=35.0
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|||. |..++++|+..+...|+++|.++..++.++.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 45788999998864 5667778887765469999999988887754
No 292
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.62 E-value=0.8 Score=43.21 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=33.2
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhH-cCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQK-FNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+|.+||-+|||. |..++++++. ++..+|+++|.++..++.++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 5689999999875 4555666665 455689999999988877654
No 293
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.52 E-value=0.43 Score=45.84 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||.+|||. |..++.+|+..+..+++++|.+++.++.++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 35688999999988 8888999998875569999999988887766
No 294
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.41 E-value=0.86 Score=45.07 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=34.2
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+|++|+-+|||. |......++.++. +|+.+|.++..++.|..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 5799999999997 6666666666665 89999999988777654
No 295
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.34 E-value=0.34 Score=46.43 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=42.6
Q ss_pred hhccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 58 KEWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
..+..|.+||-+|+|+ |..+...|+.+++.+|+.+|+++..++.|++
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3457889999999997 8888888999999999999999999999988
No 296
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.33 E-value=0.21 Score=50.28 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=40.1
Q ss_pred cccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 168 ENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 168 ~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
.|+-+..++-+..||+|....++. ..-..-.+..++-++-|+|+|+|.++|..
T Consensus 415 hDWCE~fsTYPRTYDLlHA~~lfs---~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 415 HDWCEAFSTYPRTYDLLHADGLFS---LYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred cchhhccCCCCcchhheehhhhhh---hhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 355555566678999999987763 11234457899999999999999999964
No 297
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.13 E-value=0.85 Score=41.69 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=33.7
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||-.|+|. |..++++|+..+...|+++|.++..++.++.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4688999998864 5666777777765559999999988877765
No 298
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.03 E-value=0.17 Score=40.50 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.0
Q ss_pred CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 73 SGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 73 ~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.|..++++|+..+ .+|+++|.++..++.+++
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh
Confidence 4778899999888 799999999999888866
No 299
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.98 E-value=1.4 Score=41.61 Aligned_cols=43 Identities=7% Similarity=0.147 Sum_probs=32.6
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeC---CHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDI---DSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Di---s~~~l~~a~~ 104 (290)
.++.+||-+|+|. |.++.++|+..+. +|++++. ++..++.+++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence 4788999999875 6677888887765 7999986 6777666654
No 300
>PHA01634 hypothetical protein
Probab=90.60 E-value=0.63 Score=39.11 Aligned_cols=47 Identities=4% Similarity=-0.031 Sum_probs=41.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..+++|+|||.+.|.-++.++.+ ++..|++++.++...+..+.+++.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhh
Confidence 57899999999999999988775 566999999999999999888765
No 301
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=90.05 E-value=5.6 Score=36.70 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=84.4
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
..|+.+|||-=.-...+... +...++=+|. |++++.-++.+...+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~--------------------------------- 127 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELG--------------------------------- 127 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcC---------------------------------
Confidence 46999999976655554321 1345666665 556655555444311
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCC-------CCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGR-------DSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
.....+..+...|+.+.+ .......-++++-.++.|+ ..+....+|..+.+...||
T Consensus 128 -------------~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL----~~~~v~~ll~~i~~~~~~g 190 (260)
T TIGR00027 128 -------------AEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYL----TEEAVDALLAFIAELSAPG 190 (260)
T ss_pred -------------CCCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcC----CHHHHHHHHHHHHHhCCCC
Confidence 001223455555554211 1122456688887887555 4678899999999999899
Q ss_pred cEEEEeeCCCchhhh----hhhhhhhhh-cccc--ccccCchhHHHHHHHHcCCeeeEe
Q 047406 217 GIFVLEPQPWVSYEK----NRRVSETTA-TNFQ--NIKLYPKEFQEILLDKIGFRTVED 268 (290)
Q Consensus 217 G~l~i~~~~~~~~~~----~~~~~~~~~-~~~~--~~~~~~~~~~~~ll~~~Gf~~v~~ 268 (290)
+.+++....-..... ......... .... ...+.+++..+ +|...||+..+.
T Consensus 191 s~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gw~~~~~ 248 (260)
T TIGR00027 191 SRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAE-WLAERGWRASEH 248 (260)
T ss_pred cEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHH-HHHHCCCeeecC
Confidence 999996422110000 011111111 1111 11244555555 899999998876
No 302
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=89.86 E-value=0.72 Score=44.66 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=32.6
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHH
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVAD 101 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~ 101 (290)
...+|.-|.|--.|+|++.+..| +++ +-|+|+||+-.++..
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa-~FG-a~viGtDIDyr~vra 245 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAA-HFG-AYVIGTDIDYRTVRA 245 (421)
T ss_pred ccCCCCEEecCccccCceeeehh-hhc-ceeeccccchheeec
Confidence 35799999999999999988744 454 489999998766653
No 303
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.78 E-value=0.25 Score=40.05 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=24.5
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeC
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Di 94 (290)
....+|||||+|.+...|.++ +..-+|+|+
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 457999999999998888776 446688887
No 304
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.72 E-value=2.6 Score=39.61 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=33.8
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|.+||-.|+|. |..++++|+..+. +|++++.+++.++.+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 46788999999763 5566777787664 79999999988777765
No 305
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.64 E-value=1.5 Score=40.37 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=33.3
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||..|+|. |..++.+|+..+ .+|++++.++...+.++.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHH
Confidence 45678899988763 677788888765 469999999887766643
No 306
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.41 E-value=1.2 Score=41.48 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=33.2
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+|.+||-+|+|. |..++++|+.++...|+++|.+++.++.++.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 5688999998764 5566777777765459999999888777644
No 307
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=89.30 E-value=0.52 Score=38.89 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=49.3
Q ss_pred ceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhh
Q 047406 162 IVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETT 239 (290)
Q Consensus 162 ~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 239 (290)
.+.+..+|..+.++.....+|+|+--.-.. -..+++ ..+++++.++++|||++..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP-----~~nPelWs~e~~~~l~~~~~~~~~l~T------------------ 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSP-----AKNPELWSEELFKKLARLSKPGGTLAT------------------ 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-T-----TTSGGGSSHHHHHHHHHHEEEEEEEEE------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCC-----cCCcccCCHHHHHHHHHHhCCCcEEEE------------------
Confidence 466777777654333347899999632210 011222 5899999999999999887
Q ss_pred hccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 240 ATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+.....++..|..+||.+.+.-+-
T Consensus 89 --------ys~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 89 --------YSSAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp --------S--BHHHHHHHHHCTEEEEEEE-S
T ss_pred --------eechHHHHHHHHHcCCEEEEcCCC
Confidence 333445566899999998877655
No 308
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.02 E-value=9.2 Score=35.77 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcch
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEK 136 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (290)
..+.+.+|+|+|+..=+..+...+. ....+.+|+|...+......+..-
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--------------------------- 129 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--------------------------- 129 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh---------------------------
Confidence 4568999999999866655544333 358899999999887665544330
Q ss_pred hhhhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEc--hhhhhhhhcCCchHHHHHHHHHHhhcC
Q 047406 137 NVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCL--SVTKWIHLNWGDDGLITLFMRIWKLLR 214 (290)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~--~vl~~~~l~~~~~~~~~~l~~~~~~Lk 214 (290)
.+++ .+.-..+|+...+..+++.-.-++|. ..+ =++..+....++.++...|+
T Consensus 130 -------------------y~~l--~v~~l~~~~~~~La~~~~~~~Rl~~flGStl----GN~tp~e~~~Fl~~l~~a~~ 184 (321)
T COG4301 130 -------------------YPGL--EVNALCGDYELALAELPRGGRRLFVFLGSTL----GNLTPGECAVFLTQLRGALR 184 (321)
T ss_pred -------------------CCCC--eEeehhhhHHHHHhcccCCCeEEEEEecccc----cCCChHHHHHHHHHHHhcCC
Confidence 0111 23344455443322333444444442 222 13345677899999999999
Q ss_pred CCcEEEEee
Q 047406 215 PGGIFVLEP 223 (290)
Q Consensus 215 pgG~l~i~~ 223 (290)
||-++.+..
T Consensus 185 pGd~~LlGv 193 (321)
T COG4301 185 PGDYFLLGV 193 (321)
T ss_pred CcceEEEec
Confidence 999999943
No 309
>PLN02740 Alcohol dehydrogenase-like
Probab=88.64 E-value=1.3 Score=42.39 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=35.8
Q ss_pred hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+.+|.+||-+|+|. |..++++|+..+...|+++|.+++.++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 346788999999864 5667777887765579999999988888754
No 310
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=88.59 E-value=2.6 Score=39.13 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=32.3
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
++.+||-.|||. |..+..+|+..+...+++++.++...+.++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 678899988875 6677778887654478999988877765443
No 311
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.46 E-value=2.2 Score=40.01 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=34.1
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..++++|+..+...++++|.+++.++.++.
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 35678999998763 5677778887766569999999887776654
No 312
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.93 E-value=4.1 Score=35.21 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=37.2
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..+.+|+|+|.|.+-...++.. ...-+|++++|-.+..++-+...
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R 117 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWR 117 (199)
T ss_pred CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHH
Confidence 3689999999999988877653 35679999999999988887766
No 313
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.81 E-value=1.9 Score=41.04 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=42.6
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.++...+|.--|.|.++..+...++.. +++|+|-||.+++.|++.+..
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 467899999999999999999998744 699999999999999997755
No 314
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.23 E-value=2.9 Score=36.63 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=32.7
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.++.+||..|+|+ |.....+++..+ .+|++++.++...+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHH
Confidence 5788999999986 666677777665 68999999987766653
No 315
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.39 E-value=3.3 Score=38.80 Aligned_cols=44 Identities=36% Similarity=0.559 Sum_probs=33.6
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||-.|+|+ |..++++|+..+...|++++.+++.++.++.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 5688999998865 5677777887765458999999988777643
No 316
>PLN02827 Alcohol dehydrogenase-like
Probab=86.25 E-value=2 Score=41.25 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=34.1
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|.+||-.|+|. |..++++|+..+...|+++|.++..++.++.
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 46789999998764 5666777777765568999999988777644
No 317
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=86.05 E-value=0.61 Score=43.75 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=32.9
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHH
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVA 100 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~ 100 (290)
...+++|||+|||+|..++...... ..++...|++.+.++
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred EecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 3678999999999999888876653 358899999988873
No 318
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.63 E-value=1.6 Score=44.42 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=70.8
Q ss_pred CcEEEecCCCChhhHHH---HhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 64 KDCLDIGCNSGIITIQI---AQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~l---a~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
.+|+-+|.|-|-+.-.. |.... ..++++++-+|.++-..+.. .
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~--n------------------------------- 415 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR--N------------------------------- 415 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh--c-------------------------------
Confidence 46889999999554332 22221 34899999999998777652 1
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEE
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIF 219 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l 219 (290)
-..+.+.+.....|++. ++.|....|++++- .| .-.++.+--..+|..+-+.|+|+|+.
T Consensus 416 ----------------~~~W~~~Vtii~~DMR~-w~ap~eq~DI~VSE-LL---GSFGDNELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 416 ----------------FECWDNRVTIISSDMRK-WNAPREQADIIVSE-LL---GSFGDNELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred ----------------hhhhcCeeEEEeccccc-cCCchhhccchHHH-hh---ccccCccCCHHHHHHHHhhcCCCceE
Confidence 03345569999999987 56555789998862 22 11222333378999999999999877
Q ss_pred EE
Q 047406 220 VL 221 (290)
Q Consensus 220 ~i 221 (290)
+=
T Consensus 475 IP 476 (649)
T KOG0822|consen 475 IP 476 (649)
T ss_pred cc
Confidence 64
No 319
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.39 E-value=2.6 Score=42.40 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=42.9
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..+..+|-+|-|+|.++..+...+|..++++++++|.+++.|..+...
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence 456789999999999999998888888999999999999999998754
No 320
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.85 E-value=3.8 Score=38.95 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=32.7
Q ss_pred ccCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|.+||-.|... |.++++||+..+. .++++--+++..+.++.
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~ 185 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE 185 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh
Confidence 46789999999554 5799999998876 66777777766665444
No 321
>PRK10083 putative oxidoreductase; Provisional
Probab=84.72 E-value=4.7 Score=37.32 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=31.7
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhH-cCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQK-FNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~-~~~~~i~g~Dis~~~l~~a~~ 104 (290)
..++.+||-.|+|. |..+.++|+. ++...++++|.+++..+.++.
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 35688999999653 3455556664 465568899998888777654
No 322
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.93 E-value=2.4 Score=41.54 Aligned_cols=57 Identities=16% Similarity=0.008 Sum_probs=39.3
Q ss_pred CCCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406 47 LNEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 47 ~~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
.-+||+.+.-.=.+.++.+||-|.+|......+ +... +.+|++||+||..+...+-.
T Consensus 20 ~WEDp~vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~-P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 20 CWEDPRVDMEALNIGPDDRVLTITSAGCNALDY-LLAG-PKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred ccCCcHHHHHHhCCCCCCeEEEEccCCchHHHH-HhcC-CceEEEEeCCHHHHHHHHHH
Confidence 568888776444557899999996554444444 4433 46999999999887655433
No 323
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.71 E-value=8.8 Score=34.32 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=33.6
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
..++.++|-.|||. |..++.+|+.++...|++++.+++.++.+++
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 35678899988875 6677777887765349999998887765554
No 324
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.54 E-value=2 Score=39.53 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=26.5
Q ss_pred CcEEEecCCCChhhHHHHhHcCC---------ceEEEEeCCH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNC---------RSILGIDIDS 96 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~---------~~i~g~Dis~ 96 (290)
.|++|+...+|+++..++++.-. ..|+++|+-+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP 84 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence 78999999999999998876532 1399999854
No 325
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.88 E-value=4.7 Score=37.12 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=31.6
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.++.+||-.|+|. |..++.+|+..+...|++++-+++..+.+.
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK 201 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 35678999998653 566677777766544889998887766653
No 326
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.79 E-value=19 Score=27.95 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406 71 CNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 71 cG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~ 104 (290)
||.|.++..+++.+. ...|+.+|.+++.++.+..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~ 39 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE 39 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh
Confidence 666777777776553 3479999999998777765
No 327
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=82.78 E-value=5.7 Score=36.97 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+++|.+||-+|.++|.--..+....+ .--||+++.|+.+=.....-+.+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------------------------------ 203 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------------------------------ 203 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------------------------------
Confidence 47899999999999976555554433 34689999988654433322211
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC--CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS--PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
..+|-.+..|.+..... .-.-.|+|++- +- ..++.+-+.-+....|++|
T Consensus 204 ---------------------RtNiiPIiEDArhP~KYRmlVgmVDvIFaD-va-------qpdq~RivaLNA~~FLk~g 254 (317)
T KOG1596|consen 204 ---------------------RTNIIPIIEDARHPAKYRMLVGMVDVIFAD-VA-------QPDQARIVALNAQYFLKNG 254 (317)
T ss_pred ---------------------cCCceeeeccCCCchheeeeeeeEEEEecc-CC-------CchhhhhhhhhhhhhhccC
Confidence 22466666777652100 11235666642 11 1234455566788889999
Q ss_pred cEEEEee
Q 047406 217 GIFVLEP 223 (290)
Q Consensus 217 G~l~i~~ 223 (290)
|-++++.
T Consensus 255 Ghfvisi 261 (317)
T KOG1596|consen 255 GHFVISI 261 (317)
T ss_pred CeEEEEE
Confidence 9999964
No 328
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=82.65 E-value=5.4 Score=37.90 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=34.4
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..++++|+.++...|+++|.+++.++.++.
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 46788999998764 5666777777765479999999988877654
No 329
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=82.59 E-value=6.1 Score=36.48 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=35.5
Q ss_pred CcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 160 FDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 160 ~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.+++.++.+.|.+.++. +..++-++..-..+ + +.-...|..++..|.|||++++..-
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-----Y---esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-----Y---ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE---S-----H---HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred cccEEEECCcchhhhccCCCccEEEEEEeccc-----h---HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 35789999999776554 23333333321111 1 3457889999999999999999643
No 330
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=82.17 E-value=6.5 Score=36.40 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=31.3
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.++.+||-.|+|. |..++.+|+..+...+++++.++...+.++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 35678898877653 667777888776447888888876665554
No 331
>PTZ00357 methyltransferase; Provisional
Probab=81.43 E-value=6.4 Score=41.67 Aligned_cols=109 Identities=11% Similarity=0.037 Sum_probs=61.7
Q ss_pred cEEEecCCCChhhHHH---HhHcC-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 65 DCLDIGCNSGIITIQI---AQKFN-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 65 ~vLDiGcG~G~~~~~l---a~~~~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
.|+-+|+|-|-+.... ++..+ ..+|+++|-++.++.....+...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N-------------------------------- 750 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAN-------------------------------- 750 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhc--------------------------------
Confidence 5899999999543322 22222 34899999997765554443211
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCCC-----------CCceeEEEEchhhhhhhhcCCchHHHHHHHHH
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSP-----------EKYYDAILCLSVTKWIHLNWGDDGLITLFMRI 209 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----------~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~ 209 (290)
.++|.+. ..-....++++..|++. +..+ -+.+|+|++= .| .-.++.+--..+|.-+
T Consensus 751 -~eeW~n~-------~~~~G~~VtII~sDMR~-W~~pe~~~s~~~P~~~gKaDIVVSE-LL---GSFGDNELSPECLDGa 817 (1072)
T PTZ00357 751 -DPEWTQL-------AYTFGHTLEVIVADGRT-IATAAENGSLTLPADFGLCDLIVSE-LL---GSLGDNELSPECLEAF 817 (1072)
T ss_pred -ccccccc-------cccCCCeEEEEeCcccc-cccccccccccccccccccceehHh-hh---cccccccCCHHHHHHH
Confidence 0011110 00012347888889887 2221 1369999972 22 1112233336888888
Q ss_pred HhhcCC----CcE
Q 047406 210 WKLLRP----GGI 218 (290)
Q Consensus 210 ~~~Lkp----gG~ 218 (290)
.+.||+ +|+
T Consensus 818 QrfLKdiqhsdGI 830 (1072)
T PTZ00357 818 HAQLEDIQLSRGI 830 (1072)
T ss_pred HHhhhhhcccccc
Confidence 888887 787
No 332
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=81.43 E-value=1 Score=44.74 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=42.3
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
...+|..|.|+-||.|-+++-++++ ...|++-|++|+++++.+.++..
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccc
Confidence 4578999999999999998887776 35999999999999999998754
No 333
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.30 E-value=5.7 Score=37.39 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=35.1
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|||. |..++++|+..+. +|+++|.+++.++.++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 45788999999965 6677778887765 79999999988877754
No 334
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=80.90 E-value=15 Score=34.85 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=68.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhh
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTA 140 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (290)
..|++|+-+| -.-..++.+|--.-+-+|..+||++..+..-++-+..
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee-------------------------------- 197 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEE-------------------------------- 197 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHH--------------------------------
Confidence 4667899998 3333333332221234899999999998888776554
Q ss_pred HHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC---
Q 047406 141 AQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG--- 216 (290)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg--- 216 (290)
.++ ++++....|+++.+|. ....||+++.-..- .-+++..++++=-..|+.-
T Consensus 198 ----------------~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe-------Ti~alk~FlgRGI~tLkg~~~a 253 (354)
T COG1568 198 ----------------LGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDPPE-------TIKALKLFLGRGIATLKGEGCA 253 (354)
T ss_pred ----------------hCc-cchhheeehhcccChHHHHhhCCeeecCchh-------hHHHHHHHHhccHHHhcCCCcc
Confidence 222 3477788888875443 24689999974332 1146677777777777765
Q ss_pred cEEEEe
Q 047406 217 GIFVLE 222 (290)
Q Consensus 217 G~l~i~ 222 (290)
|++.+.
T Consensus 254 GyfgiT 259 (354)
T COG1568 254 GYFGIT 259 (354)
T ss_pred ceEeee
Confidence 777774
No 335
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=80.79 E-value=6.7 Score=37.18 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=34.1
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..++.+|+.++...|+++|.++..++.++.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 35788999998763 5566777887765579999999888777754
No 336
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.68 E-value=7 Score=36.26 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=31.6
Q ss_pred CcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 64 KDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 64 ~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+||-.|+ |.|..++++|+.++...|++++-+++..+.+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 78998886 356788888888765479999998877666654
No 337
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=80.25 E-value=7.9 Score=36.63 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=34.0
Q ss_pred ccCCCcEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.+|.+||-.|+ | .|..++++|+..+. +|++++.+++.++.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 467889999998 3 57788888888764 7999999888776664
No 338
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=80.11 E-value=3.9 Score=41.63 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=33.8
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
++.+|+-+|+|. |..+..++..+++ .|+++|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 457999999997 5677777777665 69999999998777765
No 339
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=79.51 E-value=15 Score=34.86 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
..+++|+-||.|.+..-+.+.. -.-+.++|+++.+++.-+.+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~ 45 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF 45 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC
Confidence 4689999999999987766542 234679999999988877754
No 340
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=79.50 E-value=9 Score=35.82 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=32.0
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
..++.+||=.|+|. |..+.++|+..+...|++++.+++..+.+..
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~ 215 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE 215 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 35678888888653 4566677777655478999988887776643
No 341
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=79.27 E-value=37 Score=29.22 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCCceeEEEEchhhh---------hhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 177 PEKYYDAILCLSVTK---------WIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 177 ~~~~fD~I~~~~vl~---------~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
....||.|+-++--- -+.+ ...-+..+|..+..+|+++|.+.+..
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~--nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRL--NRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHH--HHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 357899999754320 0000 01234688999999999999999964
No 342
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.26 E-value=3.7 Score=39.51 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=38.1
Q ss_pred hhccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 58 KEWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+++.+|.+|.-.|+|. |...++-|+..+..+|+|+|++++-.+.|+.
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 3457889999999987 5555555777777899999999999999987
No 343
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=79.05 E-value=13 Score=34.38 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=33.7
Q ss_pred ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|.+||=.|. |.|..++++|+..+. +|++++-+++..+.++.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK 181 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 357889998884 357788888887654 79999988887777643
No 344
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=79.05 E-value=8.8 Score=35.16 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=33.4
Q ss_pred ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|.+||-.|. +.|..++++|+..+. .|++++-+++..+.++.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 457889988884 346788888888765 79999988887776654
No 345
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.78 E-value=21 Score=33.68 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.5
Q ss_pred EEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 66 CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 66 vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
|+|+-||.|....-+.+. +..-+.++|+++.+++.-+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhC
Confidence 589999999988887654 2224568999999888777653
No 346
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=78.76 E-value=2.8 Score=41.18 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=69.5
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhh
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVT 139 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (290)
+.++....|+|.|.|.....+|....+..-+|+++....-+.|..+... .+++|+..
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~-------------------~kk~~k~f---- 246 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEE-------------------FKKLMKHF---- 246 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHH-------------------HHHHHHHh----
Confidence 3677899999999999988888876666667888766555555443322 12222222
Q ss_pred hHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 140 AAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
... ...+...+++|.+. ...-....++|+++++. + + +++.--+.++..-+++|-
T Consensus 247 ----------------Gk~-~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~--F----d-p~L~lr~~eil~~ck~gt 302 (419)
T KOG3924|consen 247 ----------------GKK-PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVA--F----D-PELKLRSKEILQKCKDGT 302 (419)
T ss_pred ----------------CCC-cCceeecccccCCHHHHHHHhhcceEEEEeccc--C----C-HHHHHhhHHHHhhCCCcc
Confidence 011 23467777777652 00122457899988886 2 2 333333347777777766
Q ss_pred EEEE
Q 047406 218 IFVL 221 (290)
Q Consensus 218 ~l~i 221 (290)
.++=
T Consensus 303 rIiS 306 (419)
T KOG3924|consen 303 RIIS 306 (419)
T ss_pred eEec
Confidence 6654
No 347
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=78.76 E-value=8 Score=38.24 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=30.5
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
...|++|+-+|+|. |......++.++ .+|+++|.++.....+
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEA 234 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHH
Confidence 36799999999997 555555556554 4899999998654333
No 348
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.34 E-value=13 Score=35.18 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=30.9
Q ss_pred ccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCH
Q 047406 60 WFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDS 96 (290)
Q Consensus 60 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~ 96 (290)
+.+|+..+|+|.-+|.++.++-++ ...|+++|-.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ 243 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGP 243 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccch
Confidence 468999999999999999999887 56899999754
No 349
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=77.33 E-value=1.7 Score=41.36 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=39.8
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..+..|+|+=.|-|.++....-..++..|+++|.+|.+++..+.++..
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~ 240 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA 240 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh
Confidence 456899999999999988444444567999999999999999888765
No 350
>PRK11524 putative methyltransferase; Provisional
Probab=77.17 E-value=8.5 Score=35.72 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=37.9
Q ss_pred eeEeecccccCC-CCCCCceeEEEEchhh----hhhhh--cCCc----hHHHHHHHHHHhhcCCCcEEEEee
Q 047406 163 VSFKQENFVHGR-DSPEKYYDAILCLSVT----KWIHL--NWGD----DGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 163 i~~~~~d~~~~~-~~~~~~fD~I~~~~vl----~~~~l--~~~~----~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
..+.++|.++.+ ..++++||+|++..-. .+... .|.. +-+..++..+.++|+|||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 456777776632 2356789999994211 00000 0000 123678999999999999999964
No 351
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=77.11 E-value=13 Score=34.57 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=30.8
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.++.++|-.|+|. |..+.++|+.++...|++++.++.....++
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 208 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK 208 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 35677888777653 456666778776567889998887766554
No 352
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=77.01 E-value=26 Score=31.79 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=31.3
Q ss_pred CcEEEecCCCC----hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNSG----IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~G----~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
+.++++.|+.| .++...|.+.-+.+++++-.++..+....+.+..
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~ 91 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE 91 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh
Confidence 57888866544 3445555555566899999998887777776654
No 353
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=76.77 E-value=3.7 Score=40.20 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=49.4
Q ss_pred cceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 161 DIVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 161 ~~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+.+.+++.++.+.+. .+++++|.++.+....|+. ++.+......+.+.++|||++++-
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~----~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMD----PEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCC----HHHHHHHHHHHHHHhCCCCEEEEe
Confidence 678889988877433 3578999999999999985 578899999999999999999993
No 354
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=76.57 E-value=9.1 Score=38.52 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=30.6
Q ss_pred CCcEEEecCCCCh--hhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGI--ITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 63 ~~~vLDiGcG~G~--~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
...+.|+|.|.|. .+..+.-..-...++.||.|..+.......++.
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~ 248 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD 248 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC
Confidence 4567778877664 333322222244789999999999998887654
No 355
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=75.72 E-value=16 Score=33.94 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=30.4
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||-.|+|. |..+..+|+.++...|++++-++...+.+..
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 206 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 5678888877654 5677778887765468888777766555443
No 356
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=75.44 E-value=21 Score=32.74 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=31.8
Q ss_pred ccCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
..++.+||-.||| .|..+..+|+..+ .+|++++.+++.++.+.
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH
Confidence 3567889999887 5666677777665 47999998887766653
No 357
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=74.96 E-value=2.8 Score=38.10 Aligned_cols=45 Identities=13% Similarity=0.122 Sum_probs=34.3
Q ss_pred CcEEEecCCCChhhHHHHhHcCC--------ceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNC--------RSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~--------~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|+|+|+|+|.++..++..... .+++.+|+||...+.-++.+..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 69999999999998888765542 4899999999887777776543
No 358
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=74.87 E-value=14 Score=34.35 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=31.8
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|||. |..+..+|+.++. ++++++.+++.++.+++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK 205 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 35678999999653 5566667777654 79999998877776643
No 359
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.39 E-value=14 Score=34.25 Aligned_cols=43 Identities=28% Similarity=0.405 Sum_probs=31.7
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.++.+||-.|+|. |..++.+|+..+ .+++++.-+++..+.++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFAR 200 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHH
Confidence 35788999998764 667777888765 47888888877666553
No 360
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=74.18 E-value=5.1 Score=39.44 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=34.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.-..++|+|.|.|.++..++-.++ .+|++||-|....+.|+.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHHH
Confidence 336899999999999999987764 599999999766666554
No 361
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=73.90 E-value=20 Score=33.55 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
++.+||-.|+|. |..++.+|+..+..+|++++.++...+.++
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 219 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR 219 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 678888888653 456667777766448999998887665553
No 362
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=73.48 E-value=13 Score=35.11 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=33.3
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||-.|+|. |..++.+|+..+...++++|.++...+.++.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 5678888888764 6677778887766579999999877766544
No 363
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=73.35 E-value=16 Score=33.83 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=30.6
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+|.+||-.|+|. |..++.+|+..+...|++++-++...+.++.
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 206 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 3677888877664 5677777877665468888877766655443
No 364
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=73.17 E-value=6.9 Score=31.97 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=24.4
Q ss_pred EecCCCC--hhhHHHH--hHcCCceEEEEeCCHHHHHHHHHH
Q 047406 68 DIGCNSG--IITIQIA--QKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 68 DiGcG~G--~~~~~la--~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
|||++.| .....++ ...+..+|+++|.+|..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5544443 334566899999999999888887
No 365
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=73.12 E-value=20 Score=33.29 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=32.3
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..+..+|+.++...|++++-+++..+.++.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 46788888888765 6677778887765348899888776665533
No 366
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=72.78 E-value=16 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=32.2
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..+..+|+..+...|++++.++...+.+..
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~ 226 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ 226 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 35678888888753 4566667777765568899988887776643
No 367
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.72 E-value=12 Score=35.63 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=28.0
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRV 99 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l 99 (290)
.+|.+||-.|+|. |..++++|+..+. ++++++.+++..
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~ 220 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKE 220 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchh
Confidence 4688899998874 6677777887654 788888776543
No 368
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=72.71 E-value=7.6 Score=37.68 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=38.8
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
..+|.++.-+|||. |..+++-|...++..|+++|+++..+++|++.
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 46889999999986 76777777777778999999999999999873
No 369
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=72.63 E-value=16 Score=35.00 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=40.8
Q ss_pred ceeEeecccccCCCC------CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406 162 IVSFKQENFVHGRDS------PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQP 225 (290)
Q Consensus 162 ~i~~~~~d~~~~~~~------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (290)
.+.|.+.|.+..... .....++|...+++.=+.. -+...-.++|.++-..++||-+|.|...|
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs-~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFS-TSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHh-cChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 588999998873211 0124677776666642111 12333468999999999999999996543
No 370
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=72.22 E-value=17 Score=34.80 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=32.0
Q ss_pred hccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 59 EWFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+.++.+||-.|+|. |..++.+|+..+...|++++.+++..+.+.+
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~ 246 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE 246 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 345778888887754 4556667777765579999988876555544
No 371
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=71.91 E-value=4.9 Score=38.75 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=34.8
Q ss_pred EEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 66 CLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 66 vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
-+|||+|.-.+-..+-.+..++...++|++...+..|..++..
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~q 148 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQ 148 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccc
Confidence 5899999887666665555567889999999999999998765
No 372
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.91 E-value=13 Score=37.08 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=28.9
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
..|++|+-+|+|. |......++.++. +|+.+|+++.....+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A 251 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQA 251 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHH
Confidence 5789999999985 4444444555544 899999998665433
No 373
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=70.68 E-value=21 Score=33.10 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=29.3
Q ss_pred cCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.++|-.|+| .|..++.+|+..+...|++++-++...+.++.
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK 204 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 467788877765 25566677777654348888887766655543
No 374
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=70.32 E-value=36 Score=29.28 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCC-cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 62 EGK-DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 62 ~~~-~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
++. .|+.+|||-=.-...+....+...++-+|. |++++.-++.+..
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~ 123 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPE 123 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHh
Confidence 554 899999999888888777555567888887 7777777666655
No 375
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=69.50 E-value=14 Score=32.17 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 198 GDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+.+.-..++.-+++.|.|||.++++ |.........+...++ .++.-.-..|.++||+.++++.-
T Consensus 61 ~s~~E~~l~~~~~~~l~pg~~lfVe------Y~~D~eT~~~L~~G~p----p~~TrLG~~Ll~~GFtwfKdWYf 124 (170)
T PF06557_consen 61 GSPLEDELYKLFSRYLEPGGRLFVE------YVEDRETRRQLQRGVP----PAETRLGFSLLKAGFTWFKDWYF 124 (170)
T ss_dssp TSHHHHHHHHHHHTT----SEEEEE-------TT-HHHHHHHHTT------GGGSHHHHHHHTTT--EEEEEE-
T ss_pred CChHHHHHHHHHHHHhhhcCeEEEE------EecCHHHHHHHHcCCC----cccchhHHHHHhCCcEEEeeeec
Confidence 4555578999999999999999996 3333322222222221 12222333678999999988653
No 376
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.31 E-value=48 Score=31.29 Aligned_cols=112 Identities=9% Similarity=0.075 Sum_probs=74.1
Q ss_pred ccCC-CcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 60 WFEG-KDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 60 ~~~~-~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
+..| ..|+-+|||-=.=...+... ....|+=+|. |+.++.=++.+...+
T Consensus 89 ~~~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~---------------------------- 138 (297)
T COG3315 89 LDAGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERG---------------------------- 138 (297)
T ss_pred HHhcccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcC----------------------------
Confidence 3444 78999999965444433221 1357778887 777777666655421
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccc-cCCCC-------CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHH
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFV-HGRDS-------PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIW 210 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~-------~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~ 210 (290)
........++..|+. ++++. .....-++++-.++.|+ ..+.+.++|++|.
T Consensus 139 ------------------~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL----~~~~v~~ll~~I~ 196 (297)
T COG3315 139 ------------------ATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYL----PEEAVDRLLSRIA 196 (297)
T ss_pred ------------------CCCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccC----CHHHHHHHHHHHH
Confidence 122334667777777 32221 23556788888888555 5688899999999
Q ss_pred hhcCCCcEEEEee
Q 047406 211 KLLRPGGIFVLEP 223 (290)
Q Consensus 211 ~~LkpgG~l~i~~ 223 (290)
.+..||=.+++..
T Consensus 197 ~~~~~gS~~~~~~ 209 (297)
T COG3315 197 ALSAPGSRVAFDY 209 (297)
T ss_pred HhCCCCceEEEec
Confidence 9999999988865
No 377
>PLN02702 L-idonate 5-dehydrogenase
Probab=69.06 E-value=22 Score=33.54 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=32.6
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-+|+|. |..++.+|+..+...|+++|.++...+.++.
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 224 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ 224 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 35678888888652 5666777887766568999998877776554
No 378
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=69.02 E-value=9.4 Score=34.17 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=36.3
Q ss_pred hHHhhhhcc--CCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 53 FKVLKKEWF--EGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 53 l~~l~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
++.|...++ +..+++|+-||+|+++..+.. ....++.-|+++..+...+.-++.
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHHhc
Confidence 345555555 579999999999999887655 355899999999988777755443
No 379
>PLN02494 adenosylhomocysteinase
Probab=68.29 E-value=13 Score=37.68 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=29.6
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
..|++|+-+|+|. |......++.++. +|+++|.++.....+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA 293 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQA 293 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHH
Confidence 5789999999996 5555555555544 899999998654444
No 380
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=68.09 E-value=17 Score=33.94 Aligned_cols=42 Identities=19% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
++.+||-.|+|. |..+..+|+..+...|++++.++...+.+.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 217 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAK 217 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 678888887753 566677777766557899998887766664
No 381
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=67.86 E-value=19 Score=33.24 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=30.9
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
..++.+||-.|+|. |..+..+|+..+...+++++-++...+.+
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA 200 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 35678899998765 66777778876643489998887766554
No 382
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=67.04 E-value=26 Score=32.00 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=20.9
Q ss_pred hHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 77 TIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 77 ~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+..+.+..+..+|+|.|.++..++.|.+
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 4455666556799999999999888865
No 383
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=66.70 E-value=11 Score=35.57 Aligned_cols=84 Identities=19% Similarity=0.392 Sum_probs=49.1
Q ss_pred ceeEeecccccCCCC---CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhh
Q 047406 162 IVSFKQENFVHGRDS---PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSET 238 (290)
Q Consensus 162 ~i~~~~~d~~~~~~~---~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 238 (290)
.|.|...|....++. -.+.||+|+..... +|+ +-..+..+++|+|.|+++..-..-.......
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~--vh~---------L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~--- 266 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSM--VHF---------LKPELFQALAPDAVLVVETAKFMVDLRKEQL--- 266 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhh--Hhh---------cchHHHHHhCCCCEEEEEcchhheeCCHHHH---
Confidence 577888777664433 24679999986543 221 1123778899999999986422111111111
Q ss_pred hhccccccccCchhHHHHHHHHcCCeeeEe
Q 047406 239 TATNFQNIKLYPKEFQEILLDKIGFRTVED 268 (290)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~ 268 (290)
.-......+ ++..+||+.+..
T Consensus 267 --------~~F~~kv~e-LA~~aG~~p~~~ 287 (289)
T PF14740_consen 267 --------QEFVKKVKE-LAKAAGFKPVTN 287 (289)
T ss_pred --------HHHHHHHHH-HHHHCCCccccc
Confidence 112233334 888999987654
No 384
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=66.46 E-value=46 Score=30.37 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=30.4
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||-.|+|. |..++.+|+..+. ++++++.+++..+.++.
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 5678899887643 4455566666554 68999998888777765
No 385
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=65.82 E-value=25 Score=32.38 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=32.5
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..+..+|+.....+|++++-+++..+.+++
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~ 205 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE 205 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Confidence 46778999998653 5566667775424589999999988777743
No 386
>PRK13699 putative methylase; Provisional
Probab=64.38 E-value=19 Score=32.46 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEe
Q 047406 202 LITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 202 ~~~~l~~~~~~LkpgG~l~i~ 222 (290)
+...+.++.++|+|||.+++-
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 357889999999999998873
No 387
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=64.15 E-value=28 Score=33.46 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=27.5
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNR 98 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~ 98 (290)
.++.+|+-.|+|. |..++++|+.++. +|++++.+++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~ 214 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEK 214 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHH
Confidence 3688999888864 5677777887764 78899887654
No 388
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=63.98 E-value=14 Score=33.83 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=33.2
Q ss_pred cEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406 65 DCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLR 107 (290)
Q Consensus 65 ~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~ 107 (290)
+++|+-||.|.+..-+.+. +-.-+.++|+++.+.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc
Confidence 7899999999998887664 33367899999999888888763
No 389
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=63.23 E-value=14 Score=35.06 Aligned_cols=45 Identities=27% Similarity=0.267 Sum_probs=35.7
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|||. |..++++|+..+..+|+++|.+++.++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 46788999999864 5677778887765579999999998888755
No 390
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=63.17 E-value=23 Score=33.38 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=31.0
Q ss_pred cCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 61 FEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 61 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.++.+||-.|+| .|..++.+++..+...|++++-++...+.+.
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~ 224 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR 224 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 567888888775 3566677788776545899988887766553
No 391
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=62.67 E-value=38 Score=31.42 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=33.7
Q ss_pred ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|.+||-.|+ |.|..++++|+.++. +|++++.+++..+.++.
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 467889999986 346788888887765 78999988877766654
No 392
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=62.61 E-value=35 Score=32.14 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=29.6
Q ss_pred cCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 61 FEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 61 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.++.+||-.|+| .|..+..+|+..+...+++++-++...+.+.
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~ 229 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK 229 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 467788877665 3556667777766544899998887766553
No 393
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.57 E-value=41 Score=31.05 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=30.2
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
..++.+||=.|||. |..+..+|+..+...+++++.++...+.++
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 210 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR 210 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 35677777787763 566677788776546889998876555544
No 394
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=61.58 E-value=7.8 Score=40.38 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=31.7
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCc-eEEEEeCCH
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCR-SILGIDIDS 96 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~i~g~Dis~ 96 (290)
.+.++..|||++|.+|.+....++.+|.. -|+|+|+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 35678999999999999998888888854 578999865
No 395
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=61.36 E-value=12 Score=32.07 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 201 GLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 201 ~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
-+..++.++.++|+|||.+++..+
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHHHhhcCCCeeEEEEec
Confidence 457899999999999999999654
No 396
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=61.34 E-value=66 Score=29.41 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=28.2
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.++|-.|||. |..+..+++..+ .+|++++-+++..+.+
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g-~~v~~~~~~~~~~~~~ 207 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQG-AEVFAFTRSGEHQELA 207 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEcCChHHHHHH
Confidence 35677888887653 344455666554 5899998888666555
No 397
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=60.80 E-value=1.1e+02 Score=26.35 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=58.4
Q ss_pred EEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHHH
Q 047406 66 CLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQE 143 (290)
Q Consensus 66 vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (290)
|.-||+|+ | .++..++.. +.+|..+|.+++.++.+...+...... ..++|.-.....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~--------------~~~~~~~~~~~~----- 60 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDR--------------LVRKGRLSQEEA----- 60 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHH--------------HHHTTTTTHHHH-----
T ss_pred EEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhh--------------hhhhccchhhhh-----
Confidence 55677765 3 233333333 569999999999999999887762211 001111000000
Q ss_pred HHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 144 EKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
.....++. ...|+.+ . ...|+|+-.- .-..+....+|.++.+++.|+-+|.-..
T Consensus 61 -------------~~~~~~i~-~~~dl~~----~-~~adlViEai-------~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 61 -------------DAALARIS-FTTDLEE----A-VDADLVIEAI-------PEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp -------------HHHHHTEE-EESSGGG----G-CTESEEEE-S--------SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred -------------hhhhhhcc-cccCHHH----H-hhhheehhhc-------cccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 00011233 2223322 2 2678888531 1123556899999999999999988854
Q ss_pred C
Q 047406 224 Q 224 (290)
Q Consensus 224 ~ 224 (290)
.
T Consensus 115 S 115 (180)
T PF02737_consen 115 S 115 (180)
T ss_dssp S
T ss_pred C
Confidence 4
No 398
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.61 E-value=52 Score=27.22 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=24.9
Q ss_pred hhccCCCcEEEecCCCC-hhhHHHHhHcCCceEEEEeCCHH
Q 047406 58 KEWFEGKDCLDIGCNSG-IITIQIAQKFNCRSILGIDIDSN 97 (290)
Q Consensus 58 ~~~~~~~~vLDiGcG~G-~~~~~la~~~~~~~i~g~Dis~~ 97 (290)
.+..+ .+|.++|-|-= .++..|+++ + ..++++||++.
T Consensus 10 re~~~-gkVvEVGiG~~~~VA~~L~e~-g-~dv~atDI~~~ 47 (129)
T COG1255 10 RENAR-GKVVEVGIGFFLDVAKRLAER-G-FDVLATDINEK 47 (129)
T ss_pred HHhcC-CcEEEEccchHHHHHHHHHHc-C-CcEEEEecccc
Confidence 34334 49999998764 355555554 3 57999999875
No 399
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=60.47 E-value=23 Score=34.60 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHc--------CCceEEEEeCCHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKF--------NCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~--------~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
....++|+|.|.|.++..++... ...+++-+++|+...+.=+..+..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 44689999999999888776543 245899999999988777776665
No 400
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=59.79 E-value=44 Score=30.73 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=29.7
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+||-.|+|. |..+..+|+..+..+|++++-+++..+.+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~ 208 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLA 208 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence 45678899888654 44555666665546889998888766655
No 401
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=58.38 E-value=43 Score=31.68 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=28.9
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
.++.++|-.|+|. |..++++|+..+. ++++++.+++....+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~ 220 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEA 220 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4678888887754 5666777887654 688888777655444
No 402
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=58.32 E-value=46 Score=30.60 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=28.3
Q ss_pred CCCcEEEe--cCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 62 EGKDCLDI--GCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 62 ~~~~vLDi--GcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+.+++=+ |+| .|..+.++|+.++. ++++++.+++..+.++.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK 186 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 44555554 443 35666777777654 79999999887777654
No 403
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.60 E-value=36 Score=31.34 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=29.8
Q ss_pred CcEEEecCCCC--hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNSG--IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~G--~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|.-||+|.- .++..++.. +..|+.+|.+++.++.+...+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~ 48 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAK 48 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 46778888752 233444432 45899999999999988876543
No 404
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=56.86 E-value=54 Score=29.84 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 62 EGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 62 ~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.+.+||=.|+. .|..+..+|+..+. +|++++-+++..+.++
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 188 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLK 188 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHH
Confidence 45788888872 35667777887654 7899998887766664
No 405
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=56.09 E-value=33 Score=32.92 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCchhhHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 48 NEDPRFKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 48 ~~~~~l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
-++|..+.-.-..-.|.+|.-||+|.-.+..+++.. +.+|.++|+++..++..+-.+
T Consensus 49 wEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 49 WEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred cCCccccHHHHhcCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHHHH
Confidence 344554432223357889999998877666666653 569999999998876655443
No 406
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=55.67 E-value=36 Score=30.96 Aligned_cols=48 Identities=29% Similarity=0.324 Sum_probs=39.7
Q ss_pred hccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 59 EWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.-.++..|||.-+|+|..++.. .. .....+|+|+++..++.+...+..
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa-~~-~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAA-KN-LGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHH-HH-cCCceEEEecCHHHHHHHHHHHHh
Confidence 3468899999999999887763 33 356899999999999999998765
No 407
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=55.37 E-value=49 Score=30.96 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=29.1
Q ss_pred CcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 64 KDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 64 ~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
++|+=+|.|- |+++..+........|++.|.+...++.+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~ 46 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE 46 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh
Confidence 5677788774 4566666555445578999999888777764
No 408
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=55.09 E-value=37 Score=31.62 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=30.1
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||=.|+|. |..+..+|+..+...++++|-++...+.+..
T Consensus 173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 217 (350)
T cd08256 173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK 217 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence 4677777766643 4566777777776678899988877655543
No 409
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=54.76 E-value=68 Score=29.71 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=29.2
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.++.++|-.|||. |..+..+++..+. .+++++.+++..+.+.
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDAL 210 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHH
Confidence 4677787777643 4555666776554 8999998887776664
No 410
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=54.42 E-value=24 Score=35.65 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=26.7
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRV 99 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l 99 (290)
..|++|+-+|+|. |......+..++ .+|+.+|.++...
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a 290 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICA 290 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhH
Confidence 5789999999996 443334444444 4899999987654
No 411
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=54.13 E-value=49 Score=30.59 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=30.1
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.++.+||-.|+|. |..+..+|+..+ .+|++++-+++..+.+.
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G-~~vi~~~~~~~~~~~~~ 206 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALG-ARVIAVDIDDDKLELAR 206 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHH
Confidence 34678899888642 455666677654 47899988887766663
No 412
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.92 E-value=1.2e+02 Score=26.18 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=27.8
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~ 104 (290)
.+++||-.|++ |.++..+++.+. +..|++++-++..++....
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46789999986 444454554432 4589999998876655433
No 413
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=53.87 E-value=76 Score=28.21 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=30.5
Q ss_pred ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.++.+|+-.||. .|..+..+++..+ ..|++++.+++..+.+.
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALG-ARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhC-CEEEEEeCCHHHHHHHH
Confidence 3567899999983 3556666677655 47899998887666553
No 414
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=53.33 E-value=19 Score=33.36 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=31.5
Q ss_pred cCCCcEEEecCCCChhhHHHHhHc-----CCceEEEEeCCHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKF-----NCRSILGIDIDSNRV 99 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~-----~~~~i~g~Dis~~~l 99 (290)
.+...++|.|||.|.++..+++.. +...++.||-.....
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 466789999999999999999987 345889999865433
No 415
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=52.57 E-value=27 Score=33.01 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=34.7
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|.+||-.|+|. |..+.++|+.++...|+++|.+++.++.++.
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 46788999998763 5566777887765579999999988887754
No 416
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=50.96 E-value=85 Score=28.87 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=31.1
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
..++.+||=.|+|. |..+..+|+..+...+++++-++...+.+..
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 35678888887642 4455666777665568889988877776654
No 417
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=50.85 E-value=1.1e+02 Score=28.40 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=51.2
Q ss_pred ceeEeecccccCCCCCCC---ceeEEEEchhhhhhhhcCCchHH--HHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhh
Q 047406 162 IVSFKQENFVHGRDSPEK---YYDAILCLSVTKWIHLNWGDDGL--ITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVS 236 (290)
Q Consensus 162 ~i~~~~~d~~~~~~~~~~---~fD~I~~~~vl~~~~l~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 236 (290)
.+....+|.....+..+. .+|+.+--.-- -. -++++ ..++..+.+...|||.+.-
T Consensus 147 ~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFs----P~-kNP~mW~~e~l~~~a~~~~~~~~l~t--------------- 206 (252)
T COG4121 147 LLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFR----PV-KNPEMWEDELLNLMARIPYRDPTLAT--------------- 206 (252)
T ss_pred eeeeeeeehhhcCCcccccccCccEEecCCcc----cc-CChhhccHHHHHHHHhhcCCCCceec---------------
Confidence 466777777665554444 67887742111 00 11222 5788999999999998876
Q ss_pred hhhhccccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 237 ETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
+...-+.+.-|+.+||++.+.-+
T Consensus 207 -----------~ssA~~vRr~L~~aGF~v~~r~g 229 (252)
T COG4121 207 -----------FAAAIAVRRRLEQAGFTVEKRTG 229 (252)
T ss_pred -----------hHHHHHHHHHHHHcCceeeecCC
Confidence 44455667778899999888643
No 418
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=50.19 E-value=21 Score=34.49 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=34.9
Q ss_pred hccCCCcEEEecCCCC--hhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 59 EWFEGKDCLDIGCNSG--IITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 59 ~~~~~~~vLDiGcG~G--~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.+.+|..||-+|.++| ..++++|...+ ...+.+.-|++.++.++.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~ 200 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKK 200 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHH
Confidence 3567788888887764 78899999877 567778888888888776
No 419
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=49.76 E-value=26 Score=34.52 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=27.6
Q ss_pred CcEEEecCCC-ChhhHH-HHhHcCCceEEEEeCCHHHHHHHHHH
Q 047406 64 KDCLDIGCNS-GIITIQ-IAQKFNCRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 64 ~~vLDiGcG~-G~~~~~-la~~~~~~~i~g~Dis~~~l~~a~~~ 105 (290)
++||-||||. |..... +|+. ...+|+..|-|.+.++.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhh
Confidence 5799999964 433332 2333 346899999998887777653
No 420
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=49.53 E-value=50 Score=37.19 Aligned_cols=59 Identities=7% Similarity=-0.012 Sum_probs=34.5
Q ss_pred cCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcE
Q 047406 159 LFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGI 218 (290)
Q Consensus 159 ~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~ 218 (290)
+...-.|.+.|++..--.-..++|.+.|...|- -......-++...+.++.+.+++.|.
T Consensus 862 w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLG-AAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 862 WNTQTQYIQADYLSDAWWNGTPFDAVTAILSLG-AAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp CSTTEEEEES-TTSCCGGCC---SEEEECTCHH-HHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred hhhcceeeeeccccceeEecCCCCEEEEEeeeh-hhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 344578999999874222347899999987763 11222334567788888888887765
No 421
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.31 E-value=44 Score=32.40 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=34.1
Q ss_pred ccCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.+|+++--+|-| -|.+++.+|+.++ .+|+++|-++..-+.|-+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG-~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG-MRVTVISTSSKKKEEAIK 223 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC-cEEEEEeCCchhHHHHHH
Confidence 4688887777654 6999999999886 599999998766565554
No 422
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=49.21 E-value=46 Score=27.71 Aligned_cols=34 Identities=9% Similarity=0.225 Sum_probs=19.8
Q ss_pred CCCcEEEecCCCCh-hhHHHHhHcCCceEEEEeCCHH
Q 047406 62 EGKDCLDIGCNSGI-ITIQIAQKFNCRSILGIDIDSN 97 (290)
Q Consensus 62 ~~~~vLDiGcG~G~-~~~~la~~~~~~~i~g~Dis~~ 97 (290)
+..+++|+|-|.=. .+..|+. .+ ..|+++|+.+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~-~G-~dV~~tDi~~~ 47 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKE-RG-FDVIATDINPR 47 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHH-HS--EEEEE-SS-S
T ss_pred CCCcEEEECcCCCHHHHHHHHH-cC-CcEEEEECccc
Confidence 44599999999754 4444444 33 68999999885
No 423
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=48.79 E-value=1.5e+02 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=24.1
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
++|+=+|+|. | .++..|++. +..|+.++-+++.++..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i 41 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAY 41 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHH
Confidence 5788999985 3 456665553 34788888876544433
No 424
>PRK06197 short chain dehydrogenase; Provisional
Probab=47.60 E-value=1.9e+02 Score=26.35 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.+++||-.|++.| ++..+++.+. +.+|+.++-++...+.+...+
T Consensus 15 ~~k~vlItGas~g-IG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 15 SGRVAVVTGANTG-LGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred CCCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 5788998886554 4444444332 357888888877666554433
No 425
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=47.26 E-value=72 Score=29.88 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=28.2
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.+.+|+-+|+|. |......++.++ .+|+.+|.++...+.++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~ 192 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARIT 192 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH
Confidence 579999999985 333344444455 48999999987655543
No 426
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=46.92 E-value=1.7e+02 Score=30.19 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=26.5
Q ss_pred CcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~ 104 (290)
.+|+= ||.|.++..+++... ...++.+|.|++.++.+++
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK 441 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 34554 455666666665432 4589999999999887754
No 427
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=46.64 E-value=27 Score=35.31 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=28.7
Q ss_pred CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeCC
Q 047406 179 KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQP 225 (290)
Q Consensus 179 ~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (290)
...|+|++.-- +.....+..++..+|+||..|.++++.
T Consensus 96 ~~ADvVviLlP---------Dt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 96 PQADLVINLTP---------DKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred HhCCEEEEcCC---------hHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 45788886321 234567779999999999999998874
No 428
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=46.46 E-value=17 Score=31.16 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVA 100 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~ 100 (290)
..|++|.=+|+|. |.....+++.++ .+|++.|.+.....
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEE 73 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhh
Confidence 4789999998864 444444444444 49999999887554
No 429
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=46.22 E-value=1.3e+02 Score=27.66 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=25.1
Q ss_pred cEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 65 DCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 65 ~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+|.=||+|. |.++..+.+. +..|+++|.+++.++.+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 466678764 3444444443 3589999999988777654
No 430
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=45.49 E-value=97 Score=28.47 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=30.0
Q ss_pred ccCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+||-.|+| .|..+..+|+..+...|++++-+++..+.+
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~ 206 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA 206 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 4577888888865 456666777765543388888888776655
No 431
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=45.41 E-value=1.1e+02 Score=27.48 Aligned_cols=42 Identities=31% Similarity=0.439 Sum_probs=27.3
Q ss_pred cCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 61 FEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 61 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
.++.++|-.|+| .|..++.+|+..+...++++.-+++..+.+
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~ 170 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALA 170 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 567788887754 245666667776543388888777665533
No 432
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.35 E-value=1.2e+02 Score=28.93 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=29.9
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|--||+|+ | .++..++. .+.+|+..|.+++.++.+...+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~ 52 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVAN 52 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5688888874 2 23333343 256999999999999887776654
No 433
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=44.68 E-value=1.1e+02 Score=28.11 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=31.0
Q ss_pred ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+||-.|++ .|..+..+|+..+. +++++.-+++..+.+
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~ 206 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELA 206 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 3567888888876 46677778887654 889998888665554
No 434
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=44.63 E-value=1.4e+02 Score=27.61 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=24.9
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
.+|.=||+|. | .++..+........|+++|.+++.++.+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR 48 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 5788888875 2 23333333211237999999998776654
No 435
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.44 E-value=1.1e+02 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=31.3
Q ss_pred ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+||-.|+ +.|..++.+|+..+ .+|+++..+++..+.+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~ 183 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALL 183 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHH
Confidence 356788998886 34677788888776 4789998888766555
No 436
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=43.26 E-value=44 Score=32.29 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=34.8
Q ss_pred ccCCCcEEEec-CC-CChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHH
Q 047406 60 WFEGKDCLDIG-CN-SGIITIQIAQKFN--CRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 60 ~~~~~~vLDiG-cG-~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~ 105 (290)
+.+|.+||-+| +| .|..++++|+..+ ..+|+++|.+++.++.++..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 35678899887 44 4677777887753 34799999999999888763
No 437
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=43.26 E-value=35 Score=29.40 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=22.6
Q ss_pred CcEEEecCCCChhhHHHHhHcCCceEEEEeC
Q 047406 64 KDCLDIGCNSGIITIQIAQKFNCRSILGIDI 94 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~~~~i~g~Di 94 (290)
.-|||+|=|+|.-=-.|-..+|+..|+++|-
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 5799999999998888888999999999995
No 438
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=42.94 E-value=1.6e+02 Score=28.88 Aligned_cols=39 Identities=8% Similarity=-0.050 Sum_probs=29.9
Q ss_pred CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEe
Q 047406 177 PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 177 ~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
..+.+|+|+. .+....+.+...+.++..+|.||+.++..
T Consensus 103 ~~~~~d~vl~-------~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 103 YPQQPGVVLI-------KVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred ccCCCCEEEE-------EeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 3466999884 23445567788999999999999998763
No 439
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=42.68 E-value=1.1e+02 Score=27.87 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 63 GKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 63 ~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.+|+-.|+ +.|..++.+|+.++..+|++++.+++..+.+.
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 192 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVK 192 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHH
Confidence 788998885 34567777888876468999998887766663
No 440
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=41.92 E-value=3.4e+02 Score=26.38 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=36.0
Q ss_pred CCCcEEEecCCCCh----hhHHHHhHc---CCceEEEEeC----CHHHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGI----ITIQIAQKF---NCRSILGIDI----DSNRVADAYWHLRKIV 110 (290)
Q Consensus 62 ~~~~vLDiGcG~G~----~~~~la~~~---~~~~i~g~Di----s~~~l~~a~~~~~~~~ 110 (290)
+...|+|+|.|.|. +...++.+- |..+|++++. +...++.+..++....
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA 169 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA 169 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH
Confidence 44689999999993 444455442 2248999999 8889999988887643
No 441
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=41.88 E-value=2.1e+02 Score=27.74 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=28.4
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~ 104 (290)
+..+++=+|+ |.++..+++... ...++.+|.+++.++....
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 3466777776 666666665543 3479999999988776654
No 442
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=41.56 E-value=3.2e+02 Score=29.03 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=32.5
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|.-||+|+ | .++..+|.. +..|+..|++++.++.+...+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 4789999997 3 344444443 56999999999999998887765
No 443
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=41.55 E-value=1.4e+02 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=30.8
Q ss_pred ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.++|-.|+ +.|..+..+++.++ ..+++++.+++..+.+
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALG-ATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHH
Confidence 356788999884 34667777777765 4789998888776655
No 444
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=41.25 E-value=1.1e+02 Score=28.12 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=26.9
Q ss_pred ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+||-.|+. .|..++.+|+..+. ++++++-++ ..+.+
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~ 217 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAV 217 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHH
Confidence 3578899999972 35666777777654 688887543 43333
No 445
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=41.15 E-value=2.7e+02 Score=29.69 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=32.1
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|--||+|+ | .++..++.. +..|+..|.+++.++.+...+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~ 380 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFK 380 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHH
Confidence 4688999986 2 344444443 56899999999999999888765
No 446
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=40.97 E-value=52 Score=31.85 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=33.6
Q ss_pred ccCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 60 WFEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 60 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
+.++.+||-.|+|. |..++++|+.++...|+.+|.+++.++.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS 228 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 45678888888764 5566777777766567778998888888876
No 447
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=40.92 E-value=61 Score=31.20 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=48.7
Q ss_pred ceeEeecccccCCC-CCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEeeC
Q 047406 162 IVSFKQENFVHGRD-SPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 162 ~i~~~~~d~~~~~~-~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
.+.++..|+.+.+. .+.+..|.++.+.+-.|+. +..+..+.+++.+-+.+|..+++...
T Consensus 308 RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmt----d~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 308 RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMT----DGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred heeeecccHHHHhccCCCCCcceEEEecchhhcc----cchHHHHHHHHhhccCCCcEEEEecc
Confidence 47888888877432 2568899999999998885 57789999999999999999999554
No 448
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=40.87 E-value=3.2e+02 Score=28.95 Aligned_cols=44 Identities=18% Similarity=0.056 Sum_probs=32.3
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|.-||+|+ | .++..+|.. .+..|+..|.+++.++.+...+..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5789999987 3 344444422 256899999999999998877765
No 449
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=40.46 E-value=3.1e+02 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=36.0
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC----CceEEEEeCCHHHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN----CRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~----~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
++..+.|..||+|.+......... ..+++|.++.+.+...+..++..
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l 267 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMIL 267 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHH
Confidence 557899999999998765443221 24689999999999998887655
No 450
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=40.41 E-value=67 Score=31.12 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=62.5
Q ss_pred CcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhHH
Q 047406 64 KDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAAQ 142 (290)
Q Consensus 64 ~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (290)
.+|.-||.|. |..+..+|.-++ ..|+-.|+|.+.+.........
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg-A~Vtild~n~~rl~~ldd~f~~---------------------------------- 213 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG-ADVTILDLNIDRLRQLDDLFGG---------------------------------- 213 (371)
T ss_pred ccEEEECCccccchHHHHHhccC-CeeEEEecCHHHHhhhhHhhCc----------------------------------
Confidence 4788888885 777777776554 5899999999888776543211
Q ss_pred HHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 143 EEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
++...-.+..+ +...-...|+++.- ++ + -+.+.+.-+.+++.+.|+||..++=
T Consensus 214 -------------------rv~~~~st~~~-iee~v~~aDlvIga-VL--I---pgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 214 -------------------RVHTLYSTPSN-IEEAVKKADLVIGA-VL--I---PGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred -------------------eeEEEEcCHHH-HHHHhhhccEEEEE-EE--e---cCCCCceehhHHHHHhcCCCcEEEE
Confidence 23333333322 11123567988873 22 1 1455666778888999999988775
No 451
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=40.34 E-value=41 Score=31.02 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=43.8
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
++.+.+ .+|...+|.--|.|.++..+.++.+...+++.|.+|-+.+.|....
T Consensus 36 l~~lsp--v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 36 LDILSP--VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred HHHcCC--CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 444433 3789999999999999999999988889999999998888887665
No 452
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.32 E-value=1.8e+02 Score=26.87 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=31.3
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|--||+|+ | .++..++.. +..|+..|.+++.++.+...+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHH
Confidence 3688888885 2 344443432 56899999999999998887765
No 453
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=39.73 E-value=2.1e+02 Score=30.37 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=65.1
Q ss_pred CcEEEecCCCC--hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhhhhH
Q 047406 64 KDCLDIGCNSG--IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNVTAA 141 (290)
Q Consensus 64 ~~vLDiGcG~G--~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (290)
.+|--||+|+= .++..+|.. +..|+..|.+++.++.+...+....... .++|.-.. ..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~--------------~~~g~~~~----~~ 373 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQ--------------VERGRITP----AK 373 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHH--------------HHcCCCCh----hh
Confidence 36888998862 344444443 5699999999999999888776532110 11111000 00
Q ss_pred HHHHHhhhcCCCccccCcCcceeEeecccccCCCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEE
Q 047406 142 QEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVL 221 (290)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i 221 (290)
.+ ....++.+. .|+ + .-...|+|+-. +. -+.+-...+|.++-.+++|+.+|.-
T Consensus 374 ~~--------------~~~~~i~~~-~~~-~----~~~~aDlViEa-v~------E~l~~K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 374 MA--------------GVLNGITPT-LSY-A----GFDNVDIVVEA-VV------ENPKVKAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred HH--------------HHHhCeEEe-CCH-H----HhcCCCEEEEc-Cc------ccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 00 001123322 122 1 12457888853 11 1224568999999999999998888
Q ss_pred eeC
Q 047406 222 EPQ 224 (290)
Q Consensus 222 ~~~ 224 (290)
.+.
T Consensus 427 nTS 429 (714)
T TIGR02437 427 NTS 429 (714)
T ss_pred CCC
Confidence 554
No 454
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=39.40 E-value=1.3e+02 Score=28.62 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=60.3
Q ss_pred cCCCcEEE--ecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 61 FEGKDCLD--IGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 61 ~~~~~vLD--iGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
.+|.+||- ...|.|.+..++++..+ ..++++--+.+-.+.|+++
T Consensus 145 kpGhtVlvhaAAGGVGlll~Ql~ra~~-a~tI~~asTaeK~~~aken--------------------------------- 190 (336)
T KOG1197|consen 145 KPGHTVLVHAAAGGVGLLLCQLLRAVG-AHTIATASTAEKHEIAKEN--------------------------------- 190 (336)
T ss_pred CCCCEEEEEeccccHHHHHHHHHHhcC-cEEEEEeccHHHHHHHHhc---------------------------------
Confidence 67887775 34566778888777654 4677777777666776663
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccC--CCCCCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCC
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG--RDSPEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPG 216 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~Lkpg 216 (290)
+..-.|.....|+.+. -.+.....|+++=+- + .+.++.-..+|||.
T Consensus 191 -------------------G~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsv---------G----~dt~~~sl~~Lk~~ 238 (336)
T KOG1197|consen 191 -------------------GAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSV---------G----KDTFAKSLAALKPM 238 (336)
T ss_pred -------------------CCcceeeccchhHHHHHHhccCCCCceeeeccc---------c----chhhHHHHHHhccC
Confidence 2222366666666552 112346788887311 1 24467778899999
Q ss_pred cEEEE
Q 047406 217 GIFVL 221 (290)
Q Consensus 217 G~l~i 221 (290)
|.++-
T Consensus 239 G~mVS 243 (336)
T KOG1197|consen 239 GKMVS 243 (336)
T ss_pred ceEEE
Confidence 99886
No 455
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=39.06 E-value=1.4e+02 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=24.6
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDS 96 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~ 96 (290)
...+|+-+|||. |..........+..+++.+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 668999999995 55444444445556899999763
No 456
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=38.11 E-value=3e+02 Score=27.96 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=26.2
Q ss_pred CcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~ 104 (290)
.+++=+||| .++..+++... ...++.+|.+++.++.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 456665555 45555555442 3479999999998877764
No 457
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=37.65 E-value=2.8e+02 Score=24.31 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=25.9
Q ss_pred ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.++|-.|+. .|..+..+++..+ ..+++++.++ ..+.+
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g-~~v~~~~~~~-~~~~~ 184 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARG-ARVIATASAA-NADFL 184 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC-CEEEEEecch-hHHHH
Confidence 4577889988862 3555666666654 4778777655 44333
No 458
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.53 E-value=1.2e+02 Score=27.84 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=28.1
Q ss_pred cEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 65 DCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 65 ~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
+|.-||+|. | .++..++.. ...|+..|.+++.++.+...+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~ 46 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIAS 46 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHH
Confidence 567777764 2 233333332 45899999999999988776543
No 459
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=37.19 E-value=1.7e+02 Score=23.28 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=40.1
Q ss_pred CCchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhh-hhhhhhh-c-cccccccCchhHHHHHHHHcCCeeeEecc
Q 047406 197 WGDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNR-RVSETTA-T-NFQNIKLYPKEFQEILLDKIGFRTVEDIG 270 (290)
Q Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~ 270 (290)
+..++..+++..+....+ |.++++..|.....-.- .+.++.- . .-+.+....++-...++..+||++...-.
T Consensus 8 Yp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~~r 82 (97)
T PF07109_consen 8 YPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRTER 82 (97)
T ss_pred cCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeeccc
Confidence 356788888888887665 66777666654432221 1111111 1 11223344455555578889998776543
No 460
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=36.57 E-value=3e+02 Score=28.65 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=26.3
Q ss_pred CcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406 64 KDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 64 ~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~ 104 (290)
.+|+=+|||. ++..+++... ...++.+|.|++.++.+++
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 401 PRVIIAGFGR--FGQIVGRLLLSSGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred CcEEEEecCh--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 5677776664 4444444322 3579999999999888765
No 461
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=36.31 E-value=1.5e+02 Score=27.15 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=29.0
Q ss_pred CCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 63 GKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 63 ~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.+||-.|+ +.|..++.+|+.+.+..|+++.-+++..+.++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~ 191 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVL 191 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH
Confidence 788988885 34667777788652457899988776655553
No 462
>PRK08507 prephenate dehydrogenase; Validated
Probab=35.86 E-value=1.8e+02 Score=26.54 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=23.7
Q ss_pred cEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 65 DCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 65 ~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+|.=||+|. |.++..+.+......|+++|.+++.++.+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 466677765 234444443322247999999998776654
No 463
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=35.35 E-value=78 Score=27.53 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=24.1
Q ss_pred ceeEEEEchhhhhhhhcCCchHHHHHH-HHHHhhcCCCcEEEEeeC
Q 047406 180 YYDAILCLSVTKWIHLNWGDDGLITLF-MRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 180 ~fD~I~~~~vl~~~~l~~~~~~~~~~l-~~~~~~LkpgG~l~i~~~ 224 (290)
..|+|+.. ..++.+..++ +++...|+||-.|++.++
T Consensus 60 ~aDvV~~L---------~PD~~q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 60 KADVVMLL---------LPDEVQPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp C-SEEEE----------S-HHHHHHHHHHHHHHHS-TT-EEEESSS
T ss_pred hCCEEEEe---------CChHHHHHHHHHHHHhhCCCCCEEEeCCc
Confidence 46888752 1345566777 889999999999999876
No 464
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.60 E-value=3e+02 Score=26.29 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=35.2
Q ss_pred cCCCcEEEecCCCCh---hhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGI---ITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~---~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
..|..||=-|.|+|. ++..+|++ ...+...|++++..+...+.++.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~ 84 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRK 84 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHh
Confidence 468899999999883 55666665 33788999999888887776665
No 465
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=34.59 E-value=1.2e+02 Score=27.58 Aligned_cols=111 Identities=17% Similarity=0.245 Sum_probs=65.6
Q ss_pred hHHhhhhccCCCcEEEecCCCChhhHHHHhHc---C-CceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhh
Q 047406 53 FKVLKKEWFEGKDCLDIGCNSGIITIQIAQKF---N-CRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVI 128 (290)
Q Consensus 53 l~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~-~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (290)
.++++-. .....|.+.|.-.|.-++..|..+ + ...|+++|||-..+.-+-.
T Consensus 61 yQellw~-~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~------------------------ 115 (237)
T COG3510 61 YQELLWE-LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR------------------------ 115 (237)
T ss_pred HHHHHHh-cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh------------------------
Confidence 3444444 355789999998887666555432 2 3589999987433221111
Q ss_pred hccCCcchhhhhHHHHHHhhhcCCCccccCcCcceeEeecccccC---CC---CCCCceeEEEEchhhhhhhhcCCchHH
Q 047406 129 EKGDGLEKNVTAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHG---RD---SPEKYYDAILCLSVTKWIHLNWGDDGL 202 (290)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~---~~~~~fD~I~~~~vl~~~~l~~~~~~~ 202 (290)
+ ..+|.|.+++-.+. .+ ...++.-+.+|...-|.+ +..
T Consensus 116 -----------------------------e-~p~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~------~hv 159 (237)
T COG3510 116 -----------------------------E-VPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSM------EHV 159 (237)
T ss_pred -----------------------------c-CCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchH------HHH
Confidence 1 12477777776552 00 022333455554444322 556
Q ss_pred HHHHHHHHhhcCCCcEEEEeeC
Q 047406 203 ITLFMRIWKLLRPGGIFVLEPQ 224 (290)
Q Consensus 203 ~~~l~~~~~~LkpgG~l~i~~~ 224 (290)
...++-+..+|..|-+++++..
T Consensus 160 LAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 160 LAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred HHHHHHhhhHhhcCceEEEecc
Confidence 6777888899999999999653
No 466
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=34.21 E-value=1.8e+02 Score=23.51 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 178 EKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 178 ~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
...||+|+..-= ..+....+..+.+.+.|+..+++..
T Consensus 65 ~~~~D~viv~vK---------a~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 65 AGPYDLVIVAVK---------AYQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp HSTESEEEE-SS---------GGGHHHHHHHHCTGEETTEEEEEES
T ss_pred cCCCcEEEEEec---------ccchHHHHHHHhhccCCCcEEEEEe
Confidence 478999996411 2355778899999999997766643
No 467
>PRK07063 short chain dehydrogenase; Provisional
Probab=34.03 E-value=2.1e+02 Score=25.08 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.++++|-.|++.| ++..+++.+. +.+|+.++.+++.++.....+
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~ 51 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAI 51 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 5688999997655 3444444332 458999999887776655544
No 468
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=33.89 E-value=1.5e+02 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.0
Q ss_pred ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+||=.|++ .|..+..+|+.++ ..++++.-+++..+.+
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g-~~v~~~~~~~~~~~~~ 179 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLLG-FKTINVVRRDEQVEEL 179 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCC-CeEEEEecChHHHHHH
Confidence 3567889888874 4667777888765 4788888777665555
No 469
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=33.57 E-value=1.4e+02 Score=26.66 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=24.1
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDS 96 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~ 96 (290)
...+|+=+|||. |........+.+..+++.+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 568999999984 65444444445666888887553
No 470
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=33.26 E-value=2.2e+02 Score=25.59 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=28.6
Q ss_pred cCCCcEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 61 FEGKDCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 61 ~~~~~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
.++.++|-.|.+. |.....++...+ .+++.++.++...+.+
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g-~~v~~~~~~~~~~~~~ 207 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFG-ATVIATAGSEDKLERA 207 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHH
Confidence 5678899888764 455566666554 4789999888766554
No 471
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=32.92 E-value=1.5e+02 Score=25.98 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHhhcCCCcEEEEeeCCCchhhhhhhhhhhhhccccccccCchhHHHHHHHHcCCeeeEeccC
Q 047406 198 GDDGLITLFMRIWKLLRPGGIFVLEPQPWVSYEKNRRVSETTATNFQNIKLYPKEFQEILLDKIGFRTVEDIGS 271 (290)
Q Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gf~~v~~~~~ 271 (290)
+.+--..++.-+++.|.|||.++++-- ..+.....+...- ..+..-.-..|-++||+..+++.-
T Consensus 68 gs~~E~~l~~~l~~~lspg~~lfVeYv------~DrET~~~lqkG~----~p~atrLGfeL~k~GftwfkdWY~ 131 (192)
T COG4353 68 GSELEVKLYKVLYNFLSPGGKLFVEYV------RDRETRYRLQKGK----PPVATRLGFELLKAGFTWFKDWYF 131 (192)
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEE------echhHHHHHHcCC----CCccchhhHHHHhCcceeeeeeec
Confidence 455557889999999999999999632 1111111111110 111122222577899999988653
No 472
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.64 E-value=1.4e+02 Score=27.23 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=28.7
Q ss_pred cEEEecCCC--ChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 65 DCLDIGCNS--GIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 65 ~vLDiGcG~--G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
+|.-||+|. +.++..++.. +.+|+++|++++.++.+...+..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~ 48 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITK 48 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHH
Confidence 577788874 3344444443 45899999999999877665543
No 473
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=32.20 E-value=64 Score=26.96 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=23.5
Q ss_pred CceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCcEEEEee
Q 047406 179 KYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 179 ~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
...|+|+..- ....++.+++++...++++-.+++..
T Consensus 68 ~~ad~Iiiav---------Ps~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 68 EDADIIIIAV---------PSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp TT-SEEEE-S----------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred CcccEEEecc---------cHHHHHHHHHHHhhccCCCCEEEEec
Confidence 3468887521 23567889999999998887777743
No 474
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=32.06 E-value=1.7e+02 Score=26.48 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=27.7
Q ss_pred ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+||-.|+. .|..++.+|+.++. .++.+.-+++..+.+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~ 180 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAEL 180 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHH
Confidence 3567888888753 46777888888765 666665555544443
No 475
>PRK08324 short chain dehydrogenase; Validated
Probab=31.68 E-value=2.8e+02 Score=29.01 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=27.6
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~ 104 (290)
.++++|-.|++.| ++..+++.+. +.+|+++|.++..++.+..
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~ 464 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAA 464 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHH
Confidence 5688998886544 4444444332 3589999999877665544
No 476
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=31.53 E-value=3.3e+02 Score=24.21 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=27.2
Q ss_pred ccCCCcEEEecCC--CChhhHHHHhHcCCceEEEEeCCHHHHHH
Q 047406 60 WFEGKDCLDIGCN--SGIITIQIAQKFNCRSILGIDIDSNRVAD 101 (290)
Q Consensus 60 ~~~~~~vLDiGcG--~G~~~~~la~~~~~~~i~g~Dis~~~l~~ 101 (290)
+.++.+++-.|+. .|.....+|+..+. +|++++- +...+.
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~-~~~~~~ 182 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCS-TRNAEL 182 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHH
Confidence 4578899999973 45677777777654 7888874 344333
No 477
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=30.52 E-value=2.7e+02 Score=25.10 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=30.2
Q ss_pred ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.++.+||-.|+ +.|..++.+|+..+. .++.++-+++..+.+.
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 182 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCK 182 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 356788888874 356777788887654 5666887887766664
No 478
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.40 E-value=1.6e+02 Score=27.15 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=28.6
Q ss_pred CcEEEecCCCC--hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNSG--IITIQIAQKFNCRSILGIDIDSNRVADAYWHLR 107 (290)
Q Consensus 64 ~~vLDiGcG~G--~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~ 107 (290)
.+|.=||+|.- .++..++. .+.+|+++|.+++.++.+...+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~ 48 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIE 48 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHH
Confidence 46778888752 33333333 24589999999999888877543
No 479
>PRK07677 short chain dehydrogenase; Provisional
Probab=30.26 E-value=2.5e+02 Score=24.54 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=26.3
Q ss_pred CCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~ 105 (290)
++++|-.|++.| ++..+++.+. +.+|++++.++..++.....
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~ 44 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLE 44 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 467888887665 3333333332 45899999988766555443
No 480
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=30.16 E-value=1.7e+02 Score=28.25 Aligned_cols=96 Identities=15% Similarity=0.058 Sum_probs=64.4
Q ss_pred cCCCcEEEec-CC-CChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHHHHHhhhhhhhhhhhchhhhhhccCCcchhh
Q 047406 61 FEGKDCLDIG-CN-SGIITIQIAQKFNCRSILGIDIDSNRVADAYWHLRKIVRTEHNEKRRANASRVEVIEKGDGLEKNV 138 (290)
Q Consensus 61 ~~~~~vLDiG-cG-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (290)
++|.+|+--| +| .|+...+||+..+ .+|+|+--+++-++.+...
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG-~rVVGiaGg~eK~~~l~~~--------------------------------- 194 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKG-CRVVGIAGGAEKCDFLTEE--------------------------------- 194 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhC-CeEEEecCCHHHHHHHHHh---------------------------------
Confidence 5677665544 33 5788899998654 5899999999888877663
Q ss_pred hhHHHHHHhhhcCCCccccCcCcceeEeecccccCCCC-CCCceeEEEEchhhhhhhhcCCchHHHHHHHHHHhhcCCCc
Q 047406 139 TAAQEEKKAISRNCSPAERNLFDIVSFKQENFVHGRDS-PEKYYDAILCLSVTKWIHLNWGDDGLITLFMRIWKLLRPGG 217 (290)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~fD~I~~~~vl~~~~l~~~~~~~~~~l~~~~~~LkpgG 217 (290)
.+....|+++..|+.+.+.. .++..|+.+-+=. -.++..+..+|++.+
T Consensus 195 ------------------lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG-------------g~v~DAv~~~ln~~a 243 (340)
T COG2130 195 ------------------LGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG-------------GEVLDAVLPLLNLFA 243 (340)
T ss_pred ------------------cCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC-------------chHHHHHHHhhcccc
Confidence 23334567777777654222 3477888884211 245667778888888
Q ss_pred EEEE
Q 047406 218 IFVL 221 (290)
Q Consensus 218 ~l~i 221 (290)
++.+
T Consensus 244 Ri~~ 247 (340)
T COG2130 244 RIPV 247 (340)
T ss_pred ceee
Confidence 8877
No 481
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.58 E-value=61 Score=29.91 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=27.1
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCC
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDID 95 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis 95 (290)
..+.||-.||.+|.++..+|.++. +..|+++--+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc
Confidence 347899999999999999998874 4477877543
No 482
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.42 E-value=2.8e+02 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=22.9
Q ss_pred CCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCH
Q 047406 62 EGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDS 96 (290)
Q Consensus 62 ~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~ 96 (290)
...+|+=+|||. |..........+..+++.+|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 568999999985 44333333334556899998653
No 483
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.40 E-value=2e+02 Score=25.45 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=30.7
Q ss_pred CCCceeEEEEchhhhhhhhcCCc-------hHHHHHHHHHHhhcCCCcEEEEee
Q 047406 177 PEKYYDAILCLSVTKWIHLNWGD-------DGLITLFMRIWKLLRPGGIFVLEP 223 (290)
Q Consensus 177 ~~~~fD~I~~~~vl~~~~l~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~ 223 (290)
..+..|+|+.++.+.-++. |++ ..++.++.++..+|.|...++...
T Consensus 47 ~gg~~DVIi~Ns~LWDl~r-y~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSR-YQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred cCCceeEEEEecceecccc-cCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 3467899999888753322 222 334677778888888888887743
No 484
>PRK06172 short chain dehydrogenase; Provisional
Probab=28.61 E-value=3.1e+02 Score=23.88 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=28.8
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.++++|-.|++.| ++..++..+. ..+|+.++-+++.++.....+
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALI 51 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 5688999997554 4444444332 358999999887766555443
No 485
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=28.38 E-value=1.2e+02 Score=26.39 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEEe
Q 047406 201 GLITLFMRIWKLLRPGGIFVLE 222 (290)
Q Consensus 201 ~~~~~l~~~~~~LkpgG~l~i~ 222 (290)
-+...++.+...++++-++++.
T Consensus 98 ~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 98 YVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp HHHHHHHHHHHHHCSCEEEEES
T ss_pred HHHHHHHHHHHHHhhcceEEEc
Confidence 4578899999999998888884
No 486
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=28.01 E-value=3.2e+02 Score=24.49 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=29.9
Q ss_pred cCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 61 FEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 61 ~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
.++.++|=.|+ +.|..+..+|+..+ .++++++-+++..+.+
T Consensus 141 ~~~~~vlI~g~~~~~g~~~~~la~~~g-~~v~~~~~~~~~~~~~ 183 (324)
T cd08244 141 TPGDVVLVTAAAGGLGSLLVQLAKAAG-ATVVGAAGGPAKTALV 183 (324)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH
Confidence 46778888885 34567777788765 4799999888776655
No 487
>PRK10458 DNA cytosine methylase; Provisional
Probab=27.88 E-value=1.2e+02 Score=30.66 Aligned_cols=43 Identities=9% Similarity=0.025 Sum_probs=34.0
Q ss_pred CCcEEEecCCCChhhHHHHhHcCCceEEEEeCCHHHHHHHHHHH
Q 047406 63 GKDCLDIGCNSGIITIQIAQKFNCRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 63 ~~~vLDiGcG~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~ 106 (290)
..+++|+-||.|.+..-+-+. +..-|.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHc
Confidence 469999999999998887554 3335679999999888877764
No 488
>PRK05867 short chain dehydrogenase; Provisional
Probab=27.83 E-value=2.9e+02 Score=24.17 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.++++|-.|+++| ++..+++.+. +.+|+.++.+++.++.....+
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEI 53 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 5788999997665 3333343332 458999999887766555443
No 489
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=27.75 E-value=3.2e+02 Score=24.67 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=28.2
Q ss_pred ccCCC-cEEEecC-C-CChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGK-DCLDIGC-N-SGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~-~vLDiGc-G-~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
..++. +||=.|+ | .|..+..+|+..+. .+++++-+++..+.+
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~ 186 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYL 186 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 35677 8999987 2 35677777777754 677776666655444
No 490
>PRK06701 short chain dehydrogenase; Provisional
Probab=27.38 E-value=4.3e+02 Score=23.97 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=22.3
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDS 96 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~ 96 (290)
..++++|-.|++.| ++..++..+. +.+|+.++.++
T Consensus 44 ~~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 44 LKGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 35678999986554 4444444432 45788888764
No 491
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=27.25 E-value=2.5e+02 Score=25.53 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=29.6
Q ss_pred ccCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHH
Q 047406 60 WFEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADA 102 (290)
Q Consensus 60 ~~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a 102 (290)
+.++.+++=.|. +.|..++.+|+..+. ++++++.++...+.+
T Consensus 138 ~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~ 181 (327)
T PRK10754 138 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRA 181 (327)
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 356778887753 346677778887664 788999888776655
No 492
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=27.07 E-value=4.9e+02 Score=23.80 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=29.2
Q ss_pred CcEEEecCCC-C-hhhHHHHhHcCCceEEEEeCCHHHHHHHHHHHHH
Q 047406 64 KDCLDIGCNS-G-IITIQIAQKFNCRSILGIDIDSNRVADAYWHLRK 108 (290)
Q Consensus 64 ~~vLDiGcG~-G-~~~~~la~~~~~~~i~g~Dis~~~l~~a~~~~~~ 108 (290)
.+|.=||+|. | .++..++.. +.+|++.|.+++.++.++..+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~ 49 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISS 49 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 4677788874 2 233333332 45899999999999887776654
No 493
>PRK07062 short chain dehydrogenase; Provisional
Probab=26.94 E-value=3.1e+02 Score=24.08 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHHH
Q 047406 62 EGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 62 ~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~~ 106 (290)
.++++|-.|++.| ++..+++.+. +.+|+.++.+++.++.+...+
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARL 52 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 5788999997765 3344444432 458999999887776655443
No 494
>PRK06949 short chain dehydrogenase; Provisional
Probab=26.88 E-value=3.2e+02 Score=23.70 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=30.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWHL 106 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~~ 106 (290)
..++++|-.| |+|.++..++..+. +.+|++++.+++.++.....+
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 3568899988 45555555555442 457999999988776655543
No 495
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=26.62 E-value=3.3e+02 Score=24.59 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=30.5
Q ss_pred cCCCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||=.|+ +.|..+..+++..+ ..+++++-++...+.++.
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~ 188 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVE 188 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHh
Confidence 46788888884 34667777777765 478999888877666544
No 496
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=26.46 E-value=82 Score=24.05 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=19.3
Q ss_pred CCcEEEecCCCCh-hhHHHHhHcC-CceEEEEeC
Q 047406 63 GKDCLDIGCNSGI-ITIQIAQKFN-CRSILGIDI 94 (290)
Q Consensus 63 ~~~vLDiGcG~G~-~~~~la~~~~-~~~i~g~Di 94 (290)
.++||-|||++|. ++..++..|. ....+|+-.
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 4899999999995 5545555554 346667654
No 497
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=26.32 E-value=1.3e+02 Score=28.39 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=32.3
Q ss_pred cCCCcEEEecCCC-ChhhHHHHhHcCCceEEEEeCCHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNS-GIITIQIAQKFNCRSILGIDIDSNRVADAYW 104 (290)
Q Consensus 61 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~i~g~Dis~~~l~~a~~ 104 (290)
.++.+||-.|+|. |..+.++|+..+...|+++|.++...+.+.+
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~ 219 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES 219 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4678888888763 5666777777665578889998877776654
No 498
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=26.31 E-value=2.4e+02 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCcEEEecC--CCChhhHHHHhHcCCceEEEEeCCHHHHHHHH
Q 047406 63 GKDCLDIGC--NSGIITIQIAQKFNCRSILGIDIDSNRVADAY 103 (290)
Q Consensus 63 ~~~vLDiGc--G~G~~~~~la~~~~~~~i~g~Dis~~~l~~a~ 103 (290)
+.+||=.|+ +.|..+..+|+..+. +|+.++.+++..+.++
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~ 188 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLK 188 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 457888876 235666777777654 6999999887766664
No 499
>PRK07814 short chain dehydrogenase; Provisional
Probab=26.08 E-value=3.3e+02 Score=24.04 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=29.0
Q ss_pred cCCCcEEEecCCCChhhHHHHhHcC--CceEEEEeCCHHHHHHHHHH
Q 047406 61 FEGKDCLDIGCNSGIITIQIAQKFN--CRSILGIDIDSNRVADAYWH 105 (290)
Q Consensus 61 ~~~~~vLDiGcG~G~~~~~la~~~~--~~~i~g~Dis~~~l~~a~~~ 105 (290)
..++++|-.|. +|.++..+++.+. +.+|++++.+++.++.....
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~ 53 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQ 53 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 35788999985 4555555554432 45899999988766555443
No 500
>PRK06153 hypothetical protein; Provisional
Probab=26.07 E-value=80 Score=31.23 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=27.3
Q ss_pred cCCCcEEEecCC-CChhhHHHHhHcCCceEEEEeCCH
Q 047406 61 FEGKDCLDIGCN-SGIITIQIAQKFNCRSILGIDIDS 96 (290)
Q Consensus 61 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~i~g~Dis~ 96 (290)
..+.+|+-|||| .|+.......+.+..+++.+|.+.
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 356899999998 477666655666777999999763
Done!