BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047407
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
1- Thiatrehazolin
pdb|2JJB|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|B Chain B, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|C Chain C, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|D Chain D, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2WYN|A Chain A, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|B Chain B, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|C Chain C, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|D Chain D, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
Length = 535
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 140/349 (40%), Gaps = 89/349 (25%)
Query: 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGR----- 55
+S SQPP + MV + GD L K+ L + KE+ +W G+ + + R
Sbjct: 173 LSRSQPPFFALMVELLAQHEGDAAL-KQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQ 231
Query: 56 -NHTLSRYYGMWNKLRPES----------------------------------------- 73
L+RY+ + RPES
Sbjct: 232 DGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNP 291
Query: 74 --------STIMELDIASM-----------AQIVGDNRTAESFLKAAQARKQAINSVFWN 114
++I+ +D+ S+ ++ GDN A + A AR++ I WN
Sbjct: 292 QQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWN 351
Query: 115 KEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTCIVEKVKK--S 172
++G + DY + K N + P+++ N ++ K +
Sbjct: 352 DQQGWYADYDL------------KSHKVRNQLTAAALFPLYV-----NAAAKDRANKMAT 394
Query: 173 FQSSGFLGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWI 232
+ L G+ T+ +S +QWD PNGWAPLQ + EGL G +E +A DI+ ++
Sbjct: 395 ATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKE---VAMDISWHFL 451
Query: 233 NTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 281
Y + EKYDV G GGGGEY Q GFGW+NGV L L+
Sbjct: 452 TNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKMLD 500
>pdb|2JF4|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Validoxylamine
Length = 535
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 138/349 (39%), Gaps = 89/349 (25%)
Query: 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGR----- 55
+S SQPP + V + GD L K+ L KE+ +W G+ + + R
Sbjct: 173 LSRSQPPFFALXVELLAQHEGDAAL-KQYLPQXQKEYAYWXDGVENLQAGQQEKRVVKLQ 231
Query: 56 -NHTLSRYYGMWNKLRPES----------------------------------------- 73
L+RY+ + RPES
Sbjct: 232 DGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWXDNP 291
Query: 74 --------STIMELDIASM-----------AQIVGDNRTAESFLKAAQARKQAINSVFWN 114
++I+ +D+ S+ ++ GDN A + A AR++ I WN
Sbjct: 292 QQLNTLRTTSIVPVDLNSLXFKXEKILARASKAAGDNAXANQYETLANARQKGIEKYLWN 351
Query: 115 KEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTCIVEKVKK--S 172
++G + DY + K N + P+++ N ++ K +
Sbjct: 352 DQQGWYADYDL------------KSHKVRNQLTAAALFPLYV-----NAAAKDRANKXAT 394
Query: 173 FQSSGFLGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWI 232
+ L G+ T+ +S +QWD PNGWAPLQ + EGL G +E +A DI+ ++
Sbjct: 395 ATKTHLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKE---VAXDISWHFL 451
Query: 233 NTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 281
Y + EKYDV G GGGGEY Q GFGW+NGV L L+
Sbjct: 452 TNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQDGFGWTNGVTLKXLD 500
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 54 GRNHTLSRYYGMWNKLRPESSTIMELDIASMA-QIVGDNRTAESFLKAAQARKQAINSVF 112
G+++ LSR+ N+ +S + + ++ A+ +I G A+ + A Q R +AI S +
Sbjct: 25 GKSNLLSRF--TKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 113 WNKEKGQWLDYWISNRTSSQECQRW 137
+ G + Y IS +S + C W
Sbjct: 83 YRGAVGALIVYDISKSSSYENCNHW 107
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 6 PPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFW 40
P LSA+ D NR D+D+ K+ + L +HQF
Sbjct: 239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 6 PPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFW 40
P LSA+ D NR D+D+ K+ + L +HQF
Sbjct: 239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273
>pdb|3CIH|A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From
Bacteroides Thetaiotaomicron
Length = 739
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 82 ASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTS 130
A A +VGD + + K A A K + FWN +K ++ + R S
Sbjct: 468 ALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQAFVHNCVDGRQS 516
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 54 GRNHTLSRYYGMWNKLRPESSTIMELDIASMAQIVGDNRT-AESFLKAAQARKQAINSVF 112
G+++ LSR+ ++ ES + + ++ A+ V + + A+ + A R +AI S +
Sbjct: 22 GKSNLLSRF--TTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAY 79
Query: 113 WNKEKGQWLDYWISNRTSSQECQRW 137
+ G + Y IS +S + C W
Sbjct: 80 YRGAVGALIVYDISKSSSYENCNHW 104
>pdb|4A02|A Chain A, X-Ray Crystallographic Structure Of Efcbm33a
pdb|4ALC|A Chain A, X-ray Photoreduction Of Polysaccharide Monooxigenase Cbm33
pdb|4ALE|A Chain A, Structure Changes Of Polysaccharide Monooxygenase Cbm33a
From Enterococcus Faecalis By X-ray Induced
Photoreduction.
pdb|4ALQ|A Chain A, X-ray Photoreduction Of Polysaccharide Monooxygenase Cbm33
pdb|4ALR|A Chain A, X-ray Photoreduction Of Polysaccharide Monooxygenase Cbm33
pdb|4ALS|A Chain A, X-ray Photoreduction Of Polysaccharide Monooxygenase Cbm33
pdb|4ALT|A Chain A, X-ray Photoreduction Of Polysaccharide Monooxigenase Cbm33
Length = 166
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 175 SSGFLGA-AGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWIN 233
S F G+ AG + R QW+ + AP I LA +G+ + + + A RW
Sbjct: 9 SRAFFGSSAGGNLNTNVGRAQWEPQSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHK 68
Query: 234 TN 235
TN
Sbjct: 69 TN 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,234,425
Number of Sequences: 62578
Number of extensions: 372102
Number of successful extensions: 1107
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 15
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)