Query 047407
Match_columns 294
No_of_seqs 170 out of 1292
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 10:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02567 alpha,alpha-trehalase 100.0 2.7E-75 5.8E-80 559.3 30.1 293 1-293 200-554 (554)
2 PRK13270 treF trehalase; Provi 100.0 9.8E-69 2.1E-73 508.8 27.6 263 1-286 219-549 (549)
3 PRK13272 treA trehalase; Provi 100.0 1.1E-68 2.4E-73 507.0 26.8 266 1-288 208-541 (542)
4 PRK13271 treA trehalase; Provi 100.0 1.6E-68 3.6E-73 509.9 27.5 262 1-285 207-538 (569)
5 PF01204 Trehalase: Trehalase; 100.0 2.9E-69 6.2E-74 517.6 16.6 267 1-284 176-512 (512)
6 KOG0602 Neutral trehalase [Car 100.0 1.3E-61 2.9E-66 455.7 21.7 274 1-290 233-571 (600)
7 COG1626 TreA Neutral trehalase 100.0 1E-52 2.2E-57 388.3 23.2 268 1-287 219-556 (558)
8 PRK10137 alpha-glucosidase; Pr 100.0 2.5E-48 5.4E-53 380.5 25.8 261 2-284 415-784 (786)
9 PF03200 Glyco_hydro_63: Manno 100.0 9.7E-39 2.1E-43 318.1 23.5 272 3-283 460-801 (801)
10 KOG2161 Glucosidase I [Carbohy 100.0 1.7E-32 3.6E-37 260.0 21.5 271 4-283 502-847 (849)
11 PF06202 GDE_C: Amylo-alpha-1, 99.9 5E-21 1.1E-25 177.9 21.5 249 5-278 85-370 (370)
12 COG3408 GDB1 Glycogen debranch 99.9 2.8E-20 6.1E-25 182.0 20.3 247 6-283 341-607 (641)
13 TIGR01577 oligosac_amyl oligos 99.6 3.4E-14 7.4E-19 140.5 23.8 240 9-283 358-613 (616)
14 PF05592 Bac_rhamnosid: Bacter 99.6 7.3E-15 1.6E-19 142.4 15.0 222 8-282 208-444 (509)
15 TIGR01561 gde_arch glycogen de 99.6 1.2E-13 2.7E-18 133.9 17.5 188 6-211 350-573 (575)
16 PF04685 DUF608: Protein of un 99.3 2.6E-12 5.6E-17 119.0 7.9 207 6-236 101-330 (365)
17 COG3387 SGA1 Glucoamylase and 99.0 1E-08 2.2E-13 100.8 15.0 177 77-285 425-606 (612)
18 TIGR01535 glucan_glucosid gluc 99.0 2.1E-07 4.6E-12 92.0 23.8 235 28-283 370-632 (648)
19 TIGR01531 glyc_debranch glycog 98.8 2.2E-07 4.7E-12 96.8 19.2 189 77-281 1232-1462(1464)
20 PF12899 Glyco_hydro_100: Alka 98.7 7.8E-06 1.7E-10 75.4 22.7 121 146-281 292-431 (436)
21 COG4354 Predicted bile acid be 98.5 6.6E-06 1.4E-10 78.2 16.8 202 8-236 446-679 (721)
22 PLN02973 beta-fructofuranosida 98.3 0.00025 5.3E-09 67.2 22.4 123 144-281 399-540 (571)
23 PLN02703 beta-fructofuranosida 98.3 0.00027 5.9E-09 67.4 21.5 122 145-281 432-572 (618)
24 PLN03005 beta-fructofuranosida 98.2 0.00017 3.7E-09 68.1 19.3 122 145-281 379-519 (550)
25 KOG2119 Predicted bile acid be 98.1 0.00015 3.2E-09 70.7 16.2 186 18-234 571-785 (879)
26 PF06824 DUF1237: Protein of u 97.9 0.00064 1.4E-08 63.6 15.5 238 9-280 133-422 (424)
27 COG3538 Uncharacterized conser 97.4 0.014 2.9E-07 53.1 16.8 237 9-280 140-419 (434)
28 PF00723 Glyco_hydro_15: Glyco 97.4 0.0063 1.4E-07 58.3 15.4 187 77-280 193-447 (448)
29 COG3459 Cellobiose phosphoryla 96.9 0.032 6.9E-07 56.8 15.0 141 77-232 766-923 (1056)
30 cd00249 AGE AGE domain; N-acyl 96.0 1.3 2.7E-05 41.2 19.9 96 10-122 59-160 (384)
31 cd00249 AGE AGE domain; N-acyl 95.9 1.5 3.3E-05 40.7 19.3 100 10-124 121-221 (384)
32 PF03632 Glyco_hydro_65m: Glyc 91.9 0.15 3.2E-06 47.6 3.3 36 9-44 110-146 (370)
33 COG1331 Highly conserved prote 91.7 4.3 9.4E-05 40.5 13.2 93 15-125 422-516 (667)
34 PF07221 GlcNAc_2-epim: N-acyl 88.6 15 0.00033 33.6 13.7 88 20-124 36-128 (346)
35 COG1331 Highly conserved prote 88.5 3.4 7.3E-05 41.3 9.5 119 6-138 211-335 (667)
36 PF07221 GlcNAc_2-epim: N-acyl 86.6 7.1 0.00015 35.8 10.2 39 80-123 29-67 (346)
37 PF07971 Glyco_hydro_92: Glyco 79.2 0.84 1.8E-05 44.4 0.9 43 78-125 244-286 (502)
38 PF03663 Glyco_hydro_76: Glyco 76.6 7.3 0.00016 36.4 6.4 103 8-126 92-206 (370)
39 PRK13807 maltose phosphorylase 75.1 15 0.00033 37.8 8.6 36 9-44 430-466 (756)
40 PF06917 Pectate_lyase_2: Peri 74.8 86 0.0019 30.5 13.8 152 77-236 311-474 (557)
41 COG3537 Putative alpha-1,2-man 73.8 4.2 9E-05 40.4 4.0 41 78-123 490-530 (768)
42 PF08760 DUF1793: Domain of un 71.2 11 0.00024 31.2 5.4 46 79-125 4-49 (171)
43 PF07470 Glyco_hydro_88: Glyco 71.1 66 0.0014 29.3 11.2 98 6-121 130-235 (336)
44 KOG2244 Highly conserved prote 70.7 41 0.00088 33.1 9.6 95 8-111 581-678 (786)
45 PF03663 Glyco_hydro_76: Glyco 68.8 43 0.00094 31.2 9.6 104 5-123 157-268 (370)
46 COG4225 Predicted unsaturated 63.5 69 0.0015 29.6 9.3 42 79-124 142-183 (357)
47 PRK11097 endo-1,4-D-glucanase; 61.4 1.5E+02 0.0031 28.0 14.7 182 79-286 123-316 (376)
48 PF09061 Stirrup: Stirrup; In 58.5 15 0.00031 25.1 3.1 29 3-32 49-77 (79)
49 PF08513 LisH: LisH; InterPro 56.0 25 0.00054 19.4 3.4 23 203-228 2-24 (27)
50 COG2942 N-acyl-D-glucosamine 2 53.8 2E+02 0.0043 27.2 14.3 38 84-124 66-103 (388)
51 COG1554 ATH1 Trehalose and mal 51.5 89 0.0019 32.1 8.7 36 9-44 439-475 (772)
52 cd04791 LanC_SerThrkinase Lant 50.6 1.6E+02 0.0035 26.2 9.8 87 9-113 144-234 (321)
53 PRK13270 treF trehalase; Provi 47.5 25 0.00055 34.7 4.2 44 182-236 162-205 (549)
54 PF13374 TPR_10: Tetratricopep 47.0 46 0.00099 19.3 4.0 30 79-108 6-35 (42)
55 PRK13271 treA trehalase; Provi 46.0 26 0.00057 34.7 4.1 44 182-236 150-193 (569)
56 PRK13272 treA trehalase; Provi 45.7 27 0.00058 34.4 4.0 42 184-236 153-194 (542)
57 PF13176 TPR_7: Tetratricopept 45.7 43 0.00092 19.5 3.6 29 79-107 3-31 (36)
58 COG3533 Uncharacterized protei 43.0 1.9E+02 0.0041 28.3 9.0 147 77-253 183-345 (589)
59 COG0124 HisS Histidyl-tRNA syn 41.4 37 0.0008 32.5 4.1 44 242-285 272-328 (429)
60 KOG3625 Alpha amylase [Carbohy 41.0 3.6E+02 0.0079 28.8 11.0 82 193-283 1428-1516(1521)
61 PLN02567 alpha,alpha-trehalase 40.7 35 0.00077 33.8 4.1 36 204-246 157-192 (554)
62 TIGR01535 glucan_glucosid gluc 38.9 77 0.0017 32.1 6.2 53 193-252 288-340 (648)
63 TIGR01577 oligosac_amyl oligos 34.3 1.3E+02 0.0028 30.2 7.0 54 192-252 287-340 (616)
64 PF01204 Trehalase: Trehalase; 33.6 33 0.00071 33.6 2.6 34 205-245 134-167 (512)
65 PF04447 DUF550: Protein of un 33.1 37 0.0008 25.3 2.1 39 200-239 43-81 (100)
66 KOG4125 Acid trehalase [Carboh 32.4 96 0.0021 29.9 5.2 92 9-104 373-472 (682)
67 PF13181 TPR_8: Tetratricopept 29.3 1.1E+02 0.0023 16.9 3.7 26 80-105 6-31 (34)
68 PF13231 PMT_2: Dolichyl-phosp 27.6 82 0.0018 24.5 3.6 35 4-38 1-35 (159)
69 PF13424 TPR_12: Tetratricopep 26.1 96 0.0021 21.0 3.3 29 78-106 49-77 (78)
70 PF15232 DUF4585: Domain of un 25.8 42 0.0009 23.7 1.3 18 110-127 31-48 (75)
71 COG2942 N-acyl-D-glucosamine 2 24.9 6E+02 0.013 24.0 11.0 104 3-121 172-285 (388)
72 COG3387 SGA1 Glucoamylase and 24.4 2.2E+02 0.0047 28.7 6.5 77 196-281 281-364 (612)
73 PF06301 Lambda_Kil: Bacteriop 24.2 1.9E+02 0.0041 18.1 4.2 30 78-110 8-37 (43)
74 PRK15444 pduC propanediol dehy 23.3 87 0.0019 29.9 3.3 44 207-253 472-516 (554)
75 KOG0602 Neutral trehalase [Car 21.9 97 0.0021 30.9 3.4 45 181-236 175-219 (600)
76 smart00685 DM14 Repeats in fly 21.1 2.6E+02 0.0056 18.8 4.4 31 80-110 13-43 (59)
77 PF02286 Dehydratase_LU: Dehyd 20.7 82 0.0018 30.0 2.5 44 207-253 472-516 (554)
78 PRK12421 ATP phosphoribosyltra 20.4 58 0.0013 30.7 1.6 34 242-275 279-320 (392)
No 1
>PLN02567 alpha,alpha-trehalase
Probab=100.00 E-value=2.7e-75 Score=559.32 Aligned_cols=293 Identities=63% Similarity=1.117 Sum_probs=267.7
Q ss_pred CCCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCCCCCcHHH----
Q 047407 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRPESSTI---- 76 (294)
Q Consensus 1 ~~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prpes~~~---- 76 (294)
|+|||||||++||+.||++|+|++||++++|.|++||+||++.|+.+.+.+.+|..++|++|++..+.||||+|++
T Consensus 200 l~RSQPPlla~mV~~~~~~t~d~~~l~~~lp~L~~E~~~W~~~~~~v~i~~~~g~~~~L~rY~~~~~~PrpEsyreD~~~ 279 (554)
T PLN02567 200 TNRSQPPLLSAMVLAVYAATKDVELVRRALPALLKEHAFWTSGRHTVTIRDANGVVHVLSRYYAMWDKPRPESSRIDKEV 279 (554)
T ss_pred cCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcceeeecCCCCcCCCcccccCCCCCCCccccccHHH
Confidence 6899999999999999999999999999999999999999999887877777788889999999999999998743
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHhCCchhHHHHHH
Q 047407 77 ---------------------------------------------------------MELDIASMAQIVGDNRTAESFLK 99 (294)
Q Consensus 77 ---------------------------------------------------------~~~~lA~la~~lG~~~~a~~~~~ 99 (294)
++++||+||+.+|+.+++++|++
T Consensus 280 a~~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~ti~t~~i~pVDLNa~L~~~e~~LA~la~~lG~~~~a~~~~~ 359 (554)
T PLN02567 280 ASKFSSSSEKQQLYRDIASAAESGWDFSSRWMRDGSNLTTLRTTSILPVDLNAFLLKMELDIAFFAKLLGDKATAERFLK 359 (554)
T ss_pred HhcCCCchHHHHHHHHHHHHHHcCCCchhhhccccccccccccccccCccHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 67789999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCeEEeeecCCCccc-chhhhccCCCCccceehhhhHHHhccCCCCchHHHHHHHHHhhhcCc
Q 047407 100 AAQARKQAINSVFWNKEKGQWLDYWISNRTSS-QECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSSGF 178 (294)
Q Consensus 100 ~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~~~ 178 (294)
+|+.++++|+++|||+++|+|+||++.+++.. +.++++....+++.+++++|+|||+|+++++++++.++++.|+++.+
T Consensus 360 ~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~~~~~~~~~~~~~~~~s~f~PLw~g~~~~~~~~a~~v~~~l~~~~l 439 (554)
T PLN02567 360 AAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQESYTWDAENQNTNVYASNFVPLWCGVVPPGDAKVEKVVESLKSSGL 439 (554)
T ss_pred HHHHHHHHHHHHhcCcccCeEEeeccccccccccccccccccccccCccHHHHHHHHcCCCChhhHHHHHHHHHHHhccC
Confidence 99999999999999999999999999874321 11222222344578889999999999999876667899999987778
Q ss_pred ccccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccC
Q 047407 179 LGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIG 258 (294)
Q Consensus 179 ~~~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g 258 (294)
+.|+|||||+.++++||||||+|||+|||+++||++||+.+|+++|++||+|||+++++.|.++|.|+||||+.+++..|
T Consensus 440 ~~pgGiptsl~~sg~qWdgPn~W~pl~~l~i~GL~~yG~~ea~~lA~~la~rwl~~~~~~~~~tg~m~EkYd~~~~~~~G 519 (554)
T PLN02567 440 VLPAGIATSLRNTGQQWDFPNAWAPLQHMIVEGLAASGSKEGKALAEDIARRWLRSNYVAYKKTGAMHEKYDARYCGEVG 519 (554)
T ss_pred ccCCcccCCCCCccccCCCCCcCHhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcCceEEeECCCCccccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CCccccCCCCccccHHHHHHHHHHhCCCCCCCCCC
Q 047407 259 GGGEYIPQTGFGWSNGVVLAFLEEFGWPEDLKIGC 293 (294)
Q Consensus 259 ~gGey~~~~~fgWT~~v~L~~~~~~~~~~~~~~~~ 293 (294)
+||||++|.||||||||+|+|+.+||.+.++++.|
T Consensus 520 gGGey~~q~GFGWTngV~L~ll~~yg~~~~~~~~~ 554 (554)
T PLN02567 520 GGGEYIPQTGFGWSNGVVLSLLEEFGWPEDKKLDC 554 (554)
T ss_pred CCCCCCCCCCcChHHHHHHHHHHHhCCcccCCCCC
Confidence 99999999999999999999999999999999999
No 2
>PRK13270 treF trehalase; Provisional
Probab=100.00 E-value=9.8e-69 Score=508.81 Aligned_cols=263 Identities=32% Similarity=0.573 Sum_probs=235.3
Q ss_pred CCCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccc--------cccCCCCeeeceeeecCCCCCCCC
Q 047407 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVN--------IQEDHGRNHTLSRYYGMWNKLRPE 72 (294)
Q Consensus 1 ~~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~--------~~~~~G~~~~l~~y~~~~~~prpe 72 (294)
|+|||||||++||..|++ .|.+++++.+|.|++||+||++++..+. +.-.+|. +|+||++..+.||||
T Consensus 219 l~RSQPP~l~~Mv~~y~~--~~~~~~~~~lp~l~~E~~fWm~~~~~~~~~~~~~~~v~~~~g~--~L~rY~~~~~~PRpE 294 (549)
T PRK13270 219 LSRSQPPVFALMVELFEE--DGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGS--LLNRYWDDRDTPRDE 294 (549)
T ss_pred ccCCCCHhHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHcCCCCccCcccccceeEecCCCC--ccccccCCCCCCCCc
Confidence 689999999999977665 5789999999999999999999865210 1113444 899999999999999
Q ss_pred cHHH-----------------------------------------------------------HHHHHHHHHHHhCCchh
Q 047407 73 SSTI-----------------------------------------------------------MELDIASMAQIVGDNRT 93 (294)
Q Consensus 73 s~~~-----------------------------------------------------------~~~~lA~la~~lG~~~~ 93 (294)
||++ ++++||++++++|+.++
T Consensus 295 syreD~~~a~~~~rp~~~~Y~~lra~aESGWDfSsRW~~~~~~L~~i~T~~iipVDLNaiL~~~e~~LA~~a~~lG~~~~ 374 (549)
T PRK13270 295 SWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLYKLESAIANISALKGEKET 374 (549)
T ss_pred hhHHHHHhhcccCCchHHHHHHHHHHHHcCCCchhhcccCCcccccccccCcchhhHHHHHHHHHHHHHHHHHHhCChHH
Confidence 9975 67889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhccCCCCchHHHHHHHHHh
Q 047407 94 AESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTCIVEKVKKSF 173 (294)
Q Consensus 94 a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l 173 (294)
+++|+++|++++++|+++|||+++|+|+|||+.+ +++ +.+++++|+|||+|++++++ ++++++.|
T Consensus 375 a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~------------~~~-~~~s~a~f~PLwaG~a~~~q--a~~l~~~l 439 (549)
T PRK13270 375 EALFRQKASARRDAVNRYLWDDENGIYRDYDWRR------------EQL-ALFSAAAIVPLYVGMANHEQ--ADRLANAV 439 (549)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCeEEeccccc------------Ccc-ccccHHHHHHHHhCCCCHHH--HHHHHHHH
Confidence 9999999999999999999999999999999986 334 67899999999999999875 47888887
Q ss_pred hhcCcccccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeecccc
Q 047407 174 QSSGFLGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEK 253 (294)
Q Consensus 174 ~~~~~~~~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~ 253 (294)
. +.++.+|||++|.+++++|||+||+|||+|||+++||++||+. ++|++|+++|++++++.|.++|.|+||||+.+
T Consensus 440 ~-~~ll~pGGl~tS~~~sgqQWD~PN~WaPlqwmiieGL~ryG~~---~lA~~LA~rwl~~~~~~~~~~g~m~EKYdv~~ 515 (549)
T PRK13270 440 R-SRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDD---LLGDEIARSWLKTVNQFYQEHHKLIEKYHIAG 515 (549)
T ss_pred H-HhcccCCCcCCCCCCCcccCCCCCCCccHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHhhcCeeEEEecCCC
Confidence 6 4667899999999999999999999999999999999999998 59999999999999999999999999999987
Q ss_pred C-CccCCCccccCCCCccccHHHHHHHHHHhCCC
Q 047407 254 C-GDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 286 (294)
Q Consensus 254 ~-~~~g~gGey~~~~~fgWT~~v~L~~~~~~~~~ 286 (294)
+ +..|+||||++|.||||||||+|+++.+||.+
T Consensus 516 ~~g~~GgGGEY~~q~GFGWTNGV~l~~l~~yg~~ 549 (549)
T PRK13270 516 GVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP 549 (549)
T ss_pred CCCCCCCCCCcCCCCCcCcHHHHHHHHHHHhCCC
Confidence 5 46678999999999999999999999999964
No 3
>PRK13272 treA trehalase; Provisional
Probab=100.00 E-value=1.1e-68 Score=507.03 Aligned_cols=266 Identities=31% Similarity=0.551 Sum_probs=239.5
Q ss_pred CCCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccc--------cccCCCCeeeceeeecCCCCCCCC
Q 047407 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVN--------IQEDHGRNHTLSRYYGMWNKLRPE 72 (294)
Q Consensus 1 ~~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~--------~~~~~G~~~~l~~y~~~~~~prpe 72 (294)
|+|||||||+.||..|+++|+|..+ ++.+|.|+|||+||+++++.+. +.-.+| +.|++|++..+.||||
T Consensus 208 l~RSQPP~l~~Mv~~~~~~t~d~~~-~~~lp~l~kEy~~Wm~~~~~~~~~~~~~~~v~~~~g--~~L~rY~~~~~~PRpE 284 (542)
T PRK13272 208 LSRSQPPFFSYMVELQAGVEGDAAY-QRYLPQLQKEYAYWMQGSDDLQPGQAARHVVRLADG--SLLNRYWDERDTPRPE 284 (542)
T ss_pred ccCCCchhHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHcCCCCCCCCccccceeEecCCC--cchhhhcCCCCCCCCh
Confidence 6899999999999999999999986 7899999999999999874211 111234 4899999999999999
Q ss_pred cHHH------------------------------------------------------------HHHHHHHHHHHhCCch
Q 047407 73 SSTI------------------------------------------------------------MELDIASMAQIVGDNR 92 (294)
Q Consensus 73 s~~~------------------------------------------------------------~~~~lA~la~~lG~~~ 92 (294)
||++ ++++||++++.+|+.+
T Consensus 285 sy~eD~~~a~~~~~~~~~~~Y~~l~a~aESGWDfSsRw~~~~~~L~~i~t~~IvpVDLNalL~~~e~~LA~~~~~lG~~~ 364 (542)
T PRK13272 285 AWLHDTRTAAEAKDRPAAEVYRDLRAGAESGWDYSSRWLADGKTLASIRTTAIVPVDLNSLLYHLERTLAQACASSGLAA 364 (542)
T ss_pred HHHHHHHHhcCcccCcHHHHHHHHHHHHhcCCCchhhhccccccccccCcccccCccHHHHHHHHHHHHHHHHHHhCChH
Confidence 9966 6789999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhccCCCCchHHHHHHHHH
Q 047407 93 TAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTCIVEKVKKS 172 (294)
Q Consensus 93 ~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~~~ 172 (294)
++++|+++|++++++|+++|||+ .|+|+|||+.+ +++++.+++++|+|||+|+++++++ +++++.
T Consensus 365 ~a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~------------~~~~~~~s~a~f~PLwag~a~~~~a--~~l~~~ 429 (542)
T PRK13272 365 CSQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQT------------RTLSEQVTAAALYPLFAGLASDDRA--KRTADS 429 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-CceEEeeccCC------------CCccccccHHHHHHHHcCCCCHHHH--HHHHHH
Confidence 99999999999999999999998 89999999987 5678889999999999999998754 777887
Q ss_pred hhhcCcccccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccc
Q 047407 173 FQSSGFLGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVE 252 (294)
Q Consensus 173 l~~~~~~~~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~ 252 (294)
|+ +.++.+|||||+..+|++|||+||+|||+|||+++||++||+. ++|++|+++|++++++.|.++|.|+||||+.
T Consensus 430 l~-~~~l~~gGlpTt~~~sgqQWD~PN~WaPlq~i~i~GL~~yG~~---~lA~~La~rwl~~~~~~~~~~g~m~EKYdv~ 505 (542)
T PRK13272 430 VR-AQLLRPGGLATTALKTGQQWDEPNGWAPLQWVAVDGLRRYGED---ALARTIGERFLAQVQALFAREHKLVEKYGLD 505 (542)
T ss_pred HH-HhccCCCCcCCCCCCccccCCCCCccHhHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHhhcCceeEEeecC
Confidence 76 4566899999999999999999999999999999999999998 5999999999999999999999999999997
Q ss_pred cCCccCCCccccCCCCccccHHHHHHHHHHhCCCCC
Q 047407 253 KCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPED 288 (294)
Q Consensus 253 ~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~~~~~~ 288 (294)
..+..|+||||++|.||||||||+|+++.+||...+
T Consensus 506 ~~g~~GgGGEY~~Q~GFGWTNgV~L~lL~~yg~~~~ 541 (542)
T PRK13272 506 GNAAGGGGGEYALQDGFGWTNGVTLMLLNLYPPGGA 541 (542)
T ss_pred CCCCCCCCCCcCCCCCCCCHHHHHHHHHHHhccccC
Confidence 666667889999999999999999999999998654
No 4
>PRK13271 treA trehalase; Provisional
Probab=100.00 E-value=1.6e-68 Score=509.86 Aligned_cols=262 Identities=34% Similarity=0.619 Sum_probs=237.8
Q ss_pred CCCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCC----------ccccccCCCCeeeceeeecCCCCCC
Q 047407 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIH----------KVNIQEDHGRNHTLSRYYGMWNKLR 70 (294)
Q Consensus 1 ~~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~----------~~~~~~~~G~~~~l~~y~~~~~~pr 70 (294)
|+|||||||+.||..|+++++| +||++.+|.|+|||+||+++++ .|.+ .+| ++|+||++..+.||
T Consensus 207 l~RSQPP~l~~Mv~~~~~~~~~-~~l~~~lp~l~kEy~~Wm~~~~~~~~~~~~~r~v~~--~~~--~~L~rY~~~~~~PR 281 (569)
T PRK13271 207 LSRSQPPFFALMVELLAQHEGD-AALKQYLPQMQKEYAYWMEGVENLQPGQQEKRVVKL--QDG--TLLNRYWDDRDTPR 281 (569)
T ss_pred ccCCCChhHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHhCCCcccCccccccceEEe--CCC--CcccccccCCCCCC
Confidence 6899999999999999999988 5999999999999999999743 2223 233 48999999999999
Q ss_pred CCcHHH------------------------------------------------------------HHHHHHHHHHHhCC
Q 047407 71 PESSTI------------------------------------------------------------MELDIASMAQIVGD 90 (294)
Q Consensus 71 pes~~~------------------------------------------------------------~~~~lA~la~~lG~ 90 (294)
||||++ ++++||++++++|+
T Consensus 282 pEsy~eD~~~a~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~~i~t~~IiPVDLNALLy~ae~~LA~la~~lGd 361 (569)
T PRK13271 282 PESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTIRTTSIVPVDLNALMFKMEKILARASKAAGD 361 (569)
T ss_pred CCcHHHHHHHHhhCCcchHHHHHHHHHHHhhcCCcchhhhccCCccccccccccccCchHHHHHHHHHHHHHHHHHHhCC
Confidence 999865 67899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhccCCCCchHHHHHHH
Q 047407 91 NRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTCIVEKVK 170 (294)
Q Consensus 91 ~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~ 170 (294)
.+++++|+++|++++++|+++|||+++|.|+|||+.+ ++++..+++++|+|||+|+++++++ ++++
T Consensus 362 ~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~------------~~~r~~~saa~f~PLwag~a~~~qA--~~Vv 427 (569)
T PRK13271 362 NAMANQYETLANARQKAIEKYLWNDKEGWYADYDLKS------------HKVRNQLTAAALFPLYVNAAAKDRA--NKVA 427 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCC------------CCEeechhHHHHHhhhcCCCCHHHH--HHHH
Confidence 9999999999999999999999999999999999986 4567788999999999999997654 7788
Q ss_pred HHhhhcCcccccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeec
Q 047407 171 KSFQSSGFLGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYD 250 (294)
Q Consensus 171 ~~l~~~~~~~~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~ 250 (294)
+.+. ++++.||||||+..++++||||||+|||+|||+++||++||+. ++|++|+++|++++++.|.++|.|+||||
T Consensus 428 ~~l~-~~Ll~pgGLpTt~~~SgqQWD~PngWaPlq~iiieGL~~yG~~---~lA~~la~rwl~~~~~~~~~~g~m~EKYd 503 (569)
T PRK13271 428 AATK-THLLQPGGLNTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQK---EVAMDVTWRFLTNVQHTYDREKKLVEKYD 503 (569)
T ss_pred HHHH-HhcCCCCCccCCCCCCCCCCcCcccCHhHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhcccCceEEeeC
Confidence 7765 5677899999999999999999999999999999999999998 49999999999999999999999999999
Q ss_pred cccCCccCCCccccCCCCccccHHHHHHHHHHhCC
Q 047407 251 VEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGW 285 (294)
Q Consensus 251 ~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~~~ 285 (294)
+...|..|+||||++|.||||||||+|+++..|+.
T Consensus 504 ~~~~G~~gGGGeY~~q~GFGWTNgV~L~lL~~~~~ 538 (569)
T PRK13271 504 VSSTGTGGGGGEYPLQDGFGWTNGVTLKMLDLICP 538 (569)
T ss_pred CCCCCCCCCCCCCCCCCCcCcHHHHHHHHHHhcCc
Confidence 97666678899999999999999999999999986
No 5
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=100.00 E-value=2.9e-69 Score=517.57 Aligned_cols=267 Identities=42% Similarity=0.775 Sum_probs=221.4
Q ss_pred CCCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh-CCCccccccCCCCeeeceeeecCCCCCCCCcHHH---
Q 047407 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNS-GIHKVNIQEDHGRNHTLSRYYGMWNKLRPESSTI--- 76 (294)
Q Consensus 1 ~~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~-~r~~~~~~~~~G~~~~l~~y~~~~~~prpes~~~--- 76 (294)
|+|||||||++||+.||++|+|++||++++|.|+++|+||++ +|. +.+. ..+..+.|++|+++.+.||||||++
T Consensus 176 l~RSQPPlla~mV~~~y~~t~d~~~l~~~lp~L~ke~~fW~~~~r~-~~~~-~~~~~~~l~ry~~~~~~prpEsy~eD~~ 253 (512)
T PF01204_consen 176 LNRSQPPLLAQMVREYYEATKDKAFLREALPALEKEYEFWMDNNRD-VRVT-GLGKGYGLNRYGDPWNSPRPESYREDVE 253 (512)
T ss_dssp TT---S--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCCEEE-TTEE-EECTSEECCHHHHCHHCT-CCCCCHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCCCcc-eeec-CCCccCCcccccCCCCCCcchHHHhhHH
Confidence 799999999999999999999999999999999999999995 443 3332 2334579999999999999998754
Q ss_pred --------------------------------------------------------------HHHHHHHHHHHhCCchhH
Q 047407 77 --------------------------------------------------------------MELDIASMAQIVGDNRTA 94 (294)
Q Consensus 77 --------------------------------------------------------------~~~~lA~la~~lG~~~~a 94 (294)
++++||+||++||+.++|
T Consensus 254 ~a~~~~~~~~~~~~y~~i~saaESGwDfssRw~~~sg~d~~~l~~~~t~~iipVDLNa~L~~~e~~LA~~a~~lG~~~~a 333 (512)
T PF01204_consen 254 TAENFPSERDKEELYRDIASAAESGWDFSSRWFRDSGFDNSNLFTIRTTDIIPVDLNAILYRNEKDLAEFAELLGDQEKA 333 (512)
T ss_dssp HHHCHCHTSTCHHHHCHHHHHHHCCHHCTGGGBSSECCEE-TCHHCECCCEE-HHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHhhcccchHHHHhhcccchhhhhhhccceeeecCCCchhhhhccceeeecCchHHHHHHHHHHHHHHHHHHcCchhHH
Confidence 678899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhccCCCCchH--HHHHHHHH
Q 047407 95 ESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTC--IVEKVKKS 172 (294)
Q Consensus 95 ~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~g~~~~~~~--~~~~~~~~ 172 (294)
+.|+++|+.++++|+++|||+++|+|+||++.+ +.+++++++++|+|||+|+++++++ ++.++++.
T Consensus 334 ~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~------------~~~~~~~~~a~f~PL~ag~a~~~qa~~~~~~~l~~ 401 (512)
T PF01204_consen 334 EEYRQRAEERKEAINQYLWDEEDGFYYDYDLRT------------GKRSPVFSPANFLPLWAGIASPEQAERLVARALDY 401 (512)
T ss_dssp HHHHHHHHHHHHHHHHHTEETTTTEE--EETTT------------TEEGG--BGGGGHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCC------------CCCcccccHHHHHHHHHhhcCHhhhhhHHHHHHHH
Confidence 999999999999999999999999999999986 4677889999999999999998873 35666777
Q ss_pred hhhcCccc-ccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeecc
Q 047407 173 FQSSGFLG-AAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDV 251 (294)
Q Consensus 173 l~~~~~~~-~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~ 251 (294)
++..+++. ++|++++.+.+++|||+||+|||+|||+++||++||+. ++|++||++|++++.+.|.++|.||||||+
T Consensus 402 ~~~~~~l~~~~g~~ts~~~~~~qWD~Pn~WaPlq~~~i~GL~~yG~~---~lA~~la~rwl~~~~~~~~~~g~m~EKYd~ 478 (512)
T PF01204_consen 402 LERSGLLTFPGGIPTSLYDTGQQWDGPNVWAPLQWMAIEGLRRYGYR---ELARRLAQRWLRLNYKVFKRTGKMFEKYDV 478 (512)
T ss_dssp CTTCCSSC-CSECTTCTTTTTSTTSTTEEEHHHHHHHHHHHHHTT-H---HHHHHHHHHHHHHHHHCCCCCSSEBSEEET
T ss_pred HHhcCCcccCCCCCCccccccccCCCCCccHhHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHhhcCchhccccc
Confidence 76666665 99999999999999999999999999999999999997 599999999999999999999999999999
Q ss_pred ccCCccC-CCccccCCCCccccHHHHHHHHHHhC
Q 047407 252 EKCGDIG-GGGEYIPQTGFGWSNGVVLAFLEEFG 284 (294)
Q Consensus 252 ~~~~~~g-~gGey~~~~~fgWT~~v~L~~~~~~~ 284 (294)
.+++..| +||||++|.||||||||+|++|.+||
T Consensus 479 ~~~~~~gg~gGeY~~q~GFGWTNgv~l~~l~~yg 512 (512)
T PF01204_consen 479 EDGGEPGGGGGEYPVQDGFGWTNGVYLDLLDKYG 512 (512)
T ss_dssp TTTSCEC-S-SSS---BS-HHHHHHHHHHHHHH-
T ss_pred eeccccCCCCCcccCCCCCccHHHHHHHHHHhhC
Confidence 9876655 89999999999999999999999998
No 6
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-61 Score=455.74 Aligned_cols=274 Identities=41% Similarity=0.756 Sum_probs=249.0
Q ss_pred CCCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCCCCCcHHH----
Q 047407 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRPESSTI---- 76 (294)
Q Consensus 1 ~~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prpes~~~---- 76 (294)
|+|||||+|+.||+.||++|+|.+|+++.+|.|.+|+.||+++|. +.+.++ |+ .|++|......||||+|++
T Consensus 233 l~RSQPPllt~Mv~~~y~~t~~~~~~~~~l~tl~kEy~fw~~~~~-~~~~~~-~~--~l~~y~~~~~~prPEsy~~d~e~ 308 (600)
T KOG0602|consen 233 LNRSQPPLLTGMVYEYYEATNDEQFLKRALPTLIKEYEFWTNNRT-EDVKDE-GK--VLSRYRVMGSGPRPESYREDFET 308 (600)
T ss_pred eccCCCchhhhhHHHhhhccCcHHHHHHHHHHHhhheecccCCCc-cccccC-Cc--eeEEEeccCCCCCCcchHHHHHH
Confidence 689999999999999999999999999999999999999999986 333232 22 5999999999999999865
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHhCCchhHHHHHH
Q 047407 77 ---------------------------------------------------------MELDIASMAQIVGDNRTAESFLK 99 (294)
Q Consensus 77 ---------------------------------------------------------~~~~lA~la~~lG~~~~a~~~~~ 99 (294)
..++|+.++...|+.++++.|++
T Consensus 309 ~e~~~t~~~~~~~~~~l~~~aesg~DfSsrw~~~~~t~~~~~t~~~vpvDLN~~~~~~~~i~~y~~~~~Gd~~~s~~~~~ 388 (600)
T KOG0602|consen 309 AEHLKTEKEKQQLYQDLAAAAESGWDFSSRWFAVNGTLSSIGTTDLVPVDLNLLYKWNADIMKYFYVVDGDPKDSAQFEK 388 (600)
T ss_pred HhcccchHHHHHHHHHHhhcCcccchhHHHhhccCCcccccccccccccchHHHHHhhHHHHhhhcccCCChhHHHHHHH
Confidence 23567788889999999999999
Q ss_pred HHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhccCCCCch--HHHHHHHHHhhhcC
Q 047407 100 AAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNT--CIVEKVKKSFQSSG 177 (294)
Q Consensus 100 ~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~g~~~~~~--~~~~~~~~~l~~~~ 177 (294)
+++.++.+|+++||||++|.|+|||+.. +.++..+++++|+|||+|+.++.+ ..++++++.|+..+
T Consensus 389 k~~~r~~~i~~vlWde~~g~w~DYd~~~------------~~~~~~~~~sn~~Pl~~~~~~~~~~~~~~~~v~~~le~~g 456 (600)
T KOG0602|consen 389 KSEQRRAAIQEVLWDEEDGAWFDYDLEL------------KKHNTYFYASNFAPLWAGCYPAPDDDKSVDKVLDYLEKSG 456 (600)
T ss_pred HHHHHHHHHHHhccCCCCCcceeccccc------------cccCCCcCchhhhhhhccCCCcccccchHHHHHHHHHHcC
Confidence 9999999999999999999999999986 467788999999999999999433 35799999999887
Q ss_pred c-ccccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeecccc-CC
Q 047407 178 F-LGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEK-CG 255 (294)
Q Consensus 178 ~-~~~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~-~~ 255 (294)
. -.|+|||+|+.+|++|||.||+|+|+++|+++||+++|..+++++|.+||++|+.++++.|..+|.|+||||+.. .+
T Consensus 457 ~~~~p~giP~Sl~~s~eQWD~Pn~WaP~q~m~~~gl~~~~~~~~~~~A~kla~~wl~~~~~~~~~~g~~~EKY~vt~~~~ 536 (600)
T KOG0602|consen 457 ALTFPGGIPTSLSNSGEQWDFPNGWAPNQHMAIEGLRRAGNQELQEVALKLAQRWLETNFAVFVDSGGMFEKYDVTRDPG 536 (600)
T ss_pred CcCCCCCCcccCCCchhhccCCCCCCcceehhhhhhhhcCCHHHHHHHHHHHHHHHHHhhhhhcccCceeEeeccccCCC
Confidence 4 489999999999999999999999999999999999998888999999999999999999999999999999987 66
Q ss_pred ccCCCccccCCCCccccHHHHHHHHHHhCCCCCCC
Q 047407 256 DIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPEDLK 290 (294)
Q Consensus 256 ~~g~gGey~~~~~fgWT~~v~L~~~~~~~~~~~~~ 290 (294)
..|+||||.+|.|||||||++|++|.+||.....+
T Consensus 537 ~~G~ggEY~~QeGFGW~Ng~il~~L~~~g~~~~~~ 571 (600)
T KOG0602|consen 537 PHGGGGEYEVQEGFGWTNGVILDLLKKYGSDLRRG 571 (600)
T ss_pred CCCCCCccccccCCCccchhHHHHHHHcCCccccc
Confidence 77889999999999999999999999999998874
No 7
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-52 Score=388.30 Aligned_cols=268 Identities=37% Similarity=0.658 Sum_probs=234.9
Q ss_pred CCCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccc--------cccCCCCe-eeceeeecCCCCCCC
Q 047407 1 MSCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVN--------IQEDHGRN-HTLSRYYGMWNKLRP 71 (294)
Q Consensus 1 ~~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~--------~~~~~G~~-~~l~~y~~~~~~prp 71 (294)
|+|||||+|+.||..++++.| .+++++.+|.++|++.+|+..--... +...+|.. ..+++||++.+.||+
T Consensus 219 LsRSQPPff~~Mv~~~~~~~g-~~~~~r~l~~~~key~~w~~~~~~l~~~~~~~~~~~~~dG~~pe~ln~y~dd~~tpr~ 297 (558)
T COG1626 219 LSRSQPPFFALMVELVAEHEG-VAALKRYLPALIKEYAYWMDGVPSLQPKQGYSRVVTLGDGSPPEVLNRYWDDRDTPRQ 297 (558)
T ss_pred eecCCCCcHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHhccCcccCccccceeEEecCCCCchhhhhhhhcccCCccc
Confidence 789999999999999999999 67899999999999999998421111 12345542 478999999999999
Q ss_pred CcHHH------------------------------------------------------------HHHHHHHHHHHhCCc
Q 047407 72 ESSTI------------------------------------------------------------MELDIASMAQIVGDN 91 (294)
Q Consensus 72 es~~~------------------------------------------------------------~~~~lA~la~~lG~~ 91 (294)
|+|.+ ++..++++.++.|+.
T Consensus 298 Esy~~t~~~a~~~~~r~~~eiy~~dRA~reSGwD~ssRw~g~~~~LasIrt~~~~p~dlna~~y~~e~~~~~~~~~~~~~ 377 (558)
T COG1626 298 ESYHETIATAKHNPERPLDEIYRDDRAGRESGWDFSSRWLGVPAPLASIRTTSILPVDLNALLYKLEEIIANISAIKGDK 377 (558)
T ss_pred hhhhhhHHHhhcCcCCChHhhhcchhhhHhccCcccccccCCCccccceeccccchhhhhhHHHHHHHHHHHHHHhcCch
Confidence 98744 567899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhccCCCCchHHHHHHHH
Q 047407 92 RTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDLFNSNTCIVEKVKK 171 (294)
Q Consensus 92 ~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~~ 171 (294)
+.++.|+++|+.++.+|++++||++.|.|+||+... ++.+..+++++++|||.|+++++++ .++++
T Consensus 378 ~~~e~~~~~A~~R~~aI~~ylW~~e~G~~~DYd~k~------------~~~~~y~~a~~~~plw~G~a~~era--~~~a~ 443 (558)
T COG1626 378 ETAERYQRKAEARRCAINKYLWDDEAGQYNDYDWKL------------KKRRAYLSAAALWPLWVGLATPERA--QRLAD 443 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccceeehhhhhc------------cccccccchhhhhhccCCCCCHHHH--HHHHH
Confidence 999999999999999999999999999999999874 4567788999999999999999864 66666
Q ss_pred HhhhcCcccccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeecc
Q 047407 172 SFQSSGFLGAAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDV 251 (294)
Q Consensus 172 ~l~~~~~~~~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~ 251 (294)
.+. +.+..||||++|...+++|||.||+|+|+|++..+||+|||+. ++|.+|+.+|+.++...+..+|.+.|||++
T Consensus 444 ~~~-~~l~~pGGl~ast~~s~~QWD~PNgWaPlq~ia~~gL~ryG~~---~la~~ia~rwL~~v~~~~d~~~~~VEKydv 519 (558)
T COG1626 444 AAL-SMLEQPGGLSASTPRSGQQWDYPNGWAPLQWIATQGLKRYGYD---ILADDIARRWLTNVEQFYDYEGKLVEKYDV 519 (558)
T ss_pred HHH-HHhcCCCceecccccccccccCCCCCccHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHhhcccceeEeee
Confidence 654 3567999999999999999999999999999999999999998 599999999999999988889999999999
Q ss_pred ccC-CccCCCccccCCCCccccHHHHHHHHHHhCCCC
Q 047407 252 EKC-GDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWPE 287 (294)
Q Consensus 252 ~~~-~~~g~gGey~~~~~fgWT~~v~L~~~~~~~~~~ 287 (294)
..+ +..|++|||+.|.||||||||+|.+|.-||..+
T Consensus 520 ~~~~~~~g~~geyp~q~GFGWtNgv~l~lL~~~~~~~ 556 (558)
T COG1626 520 SRGTGPGGGGGEYPLQDGFGWTNGVVLKLLDLYGPHA 556 (558)
T ss_pred cccccCCCCCcccCCcccccchhHHHHHHHHhhCccc
Confidence 854 445678999999999999999999999998764
No 8
>PRK10137 alpha-glucosidase; Provisional
Probab=100.00 E-value=2.5e-48 Score=380.54 Aligned_cols=261 Identities=18% Similarity=0.294 Sum_probs=206.6
Q ss_pred CCCCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCee------------------------
Q 047407 2 SCSQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNH------------------------ 57 (294)
Q Consensus 2 ~rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~------------------------ 57 (294)
..|||||++++|++||++++|++||+++||+|+++|+||.++||+ +.+|...
T Consensus 415 ~~tqPPL~a~av~~vy~~t~d~~fl~~lyPkL~a~h~Ww~~~RD~----dg~Gl~eY~~~~~~~h~~~~g~~~~~i~~~~ 490 (786)
T PRK10137 415 RNTKPSLAAWSVMEVYNVTQDKAWLAEMYPKLVAYHDWWLRNRDH----NGNGVPEYGATRDKAHNTESGEMLFTVKKGD 490 (786)
T ss_pred CCcCcCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCC----CCCceeEeecccccccccccccccccccccc
Confidence 368999999999999999999999999999999999999999985 3333211
Q ss_pred ------ece---------------------eeec--CCCCCCC-------------------------------------
Q 047407 58 ------TLS---------------------RYYG--MWNKLRP------------------------------------- 71 (294)
Q Consensus 58 ------~l~---------------------~y~~--~~~~prp------------------------------------- 71 (294)
+|. +-|. .+++||-
T Consensus 491 ~~~~~~G~~n~~~~~~~~~~~~~~~~~~~~~~WESGmDNap~f~~i~~~~~~~y~r~~y~r~~~~V~~~~~~~~dg~l~~ 570 (786)
T PRK10137 491 KEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLG 570 (786)
T ss_pred ccccccccccccccccccccccccccccccCCCCCCCCCccccccccccccchhhhccccccceeeeehhcccCCCCccC
Confidence 000 1121 1122211
Q ss_pred -----C-----cHHH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCC
Q 047407 72 -----E-----SSTI-MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGS 140 (294)
Q Consensus 72 -----e-----s~~~-~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~ 140 (294)
| +|.. +++.||+||++||+.+++++|+++|++++++|++.|||+++|+|+|+++++.....++ .+
T Consensus 571 ~p~~~e~VDLNsyLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~DydL~~~~~~~~~----~g 646 (786)
T PRK10137 571 YSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVRIEDKPLANGC----AG 646 (786)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEecCcccccccc----cC
Confidence 1 1111 5678999999999999999999999999999999999999999999998853211100 11
Q ss_pred CCc--cceehhhhHHHhccCCCCchHHHHHHHHHhhhcC-cccccccccc-----cCCCCCCCCCCCCCchHHHHHHHHH
Q 047407 141 NQS--NNAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSSG-FLGAAGIATS-----LTRSREQWDFPNGWAPLQHMIVEGL 212 (294)
Q Consensus 141 ~~~--~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~~-~~~~~Gi~ts-----~~~~~~~W~gPnvW~~~~~l~~~gL 212 (294)
+.. ...++++|+|||+|++++++ +++++++|.++. +.+++||||. .+++..||||| ||||+|||+++||
T Consensus 647 ~~i~~~~~~~agf~PLwaGia~~eq--A~~VV~~L~~p~~F~t~~GipTlS~s~p~ydp~~YWRGp-VWpp~N~Li~~GL 723 (786)
T PRK10137 647 KPIVERGKGPEGWSPLFNGAATQAN--ADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGR-VWVDQFYFGLKGM 723 (786)
T ss_pred cceeeeccCccchhhccCCCCCHHH--HHHHHHHhcChhhcCCCCCccCcCCCccccCCCCCCCCC-cCHhHHHHHHHHH
Confidence 222 24558899999999998764 589999998765 5578899873 36788999999 9999999999999
Q ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHHHhC
Q 047407 213 AKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFG 284 (294)
Q Consensus 213 ~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~~ 284 (294)
++||+. ++|++|+++++++ .+.+.++|.|+|||||.+|.. .|+ .+|||||+|+|+|.+.|.
T Consensus 724 ~rYG~~---e~A~~La~~ll~~-a~~l~~tG~~~E~YDp~TGeg--~Ga-----~~FSWTAAvlLml~~~~~ 784 (786)
T PRK10137 724 ERYGYR---DDALKLADTFFRH-AKGLTADGPIQENYNPLTGAQ--QGA-----PNFSWSAAHLYMLYNDFF 784 (786)
T ss_pred HHcCCH---HHHHHHHHHHHHH-HHHHHhcCceEEeECCCCCcc--cCC-----CCCChHHHHHHHHHHHHh
Confidence 999998 4899999999984 668899999999999998652 332 579999999999998774
No 9
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=100.00 E-value=9.7e-39 Score=318.11 Aligned_cols=272 Identities=23% Similarity=0.383 Sum_probs=207.3
Q ss_pred CCCcchHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHhhCCC-cccc-ccCCCCe---------eece
Q 047407 3 CSQPPLLSAMVYDIYNRTG-----------DLDLVKKALSALLKEHQFWNSGIH-KVNI-QEDHGRN---------HTLS 60 (294)
Q Consensus 3 rsqPP~~~~~v~~~y~~t~-----------D~~fL~~~~p~l~k~~~~w~~~r~-~~~~-~~~~G~~---------~~l~ 60 (294)
.-+||.|.+++..+.+.-. +.+||+++||+|++++.||.+... .+.. .-..|+. ++|.
T Consensus 460 ~ANPPTl~l~l~~ll~~~~~~~~~~~~~~~~~~~l~~~yp~L~~~~~wf~~tQ~G~~~~~yrWrGr~~~~~~~lnp~~L~ 539 (801)
T PF03200_consen 460 NANPPTLFLALEKLLDRLKAEKKSEDNSEEDLEFLRRIYPRLKRWYNWFNTTQAGDIPGSYRWRGRDPTTDRELNPHTLT 539 (801)
T ss_pred CCCCccHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCceeEcCCCCCccccccccCcC
Confidence 4579999999999986532 568999999999999999986643 2110 0112321 2344
Q ss_pred eeecCCCCCCC--CcHHH-----------HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCC
Q 047407 61 RYYGMWNKLRP--ESSTI-----------MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISN 127 (294)
Q Consensus 61 ~y~~~~~~prp--es~~~-----------~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~ 127 (294)
...|| .||+ .+-.| +++.|++||.+||.++++.+|.+.+..++++|++.+|||++|+|||+..++
T Consensus 540 SGlDD--YPRa~~p~~~e~hvDl~sWMa~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~~ 617 (801)
T PF03200_consen 540 SGLDD--YPRASHPSDSERHVDLTSWMAFFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLHP 617 (801)
T ss_pred CCCCC--CCCCCCCCccceechHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeecccc
Confidence 43443 4654 11111 567899999999999999999999999999999999999999999998876
Q ss_pred Ccccc---h----------hhhccCC----CCccceehhhhHHHhccCCCCchHHHHHHHHHhhhc-Cccccccccc-c-
Q 047407 128 RTSSQ---E----------CQRWKGS----NQSNNAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSS-GFLGAAGIAT-S- 187 (294)
Q Consensus 128 ~~~~~---~----------~~~~~~~----~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~-~~~~~~Gi~t-s- 187 (294)
+.+.- . ..+.... ..+.+++..+++||+++++++++.+++++++.|.++ .|++|+||+| |
T Consensus 618 ~~v~l~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~Gyvsl~Plll~ll~~ds~~L~~~L~~l~D~~ef~s~yGirSLSk 697 (801)
T PF03200_consen 618 DAVRLEWKEVLENGQFRRELVRVVRGEPQLQLVCHFGYVSLFPLLLGLLPPDSERLERLLERLLDEDEFWSPYGIRSLSK 697 (801)
T ss_pred ccceecccccccccccchhheecccCCccccceeeecccCCCchhhccCCCCHHHHHHHHHHhcChhhccCCCCCccccC
Confidence 51110 0 0000001 123566788899999999999877889999999876 5889999997 2
Q ss_pred ---cCCCC------CCCCCCCCCchHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHhhcCccceeeccc
Q 047407 188 ---LTRSR------EQWDFPNGWAPLQHMIVEGLAKSGLQ------EAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVE 252 (294)
Q Consensus 188 ---~~~~~------~~W~gPnvW~~~~~l~~~gL~~yg~~------~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~ 252 (294)
.+.++ .||||| ||+|+|||+++||++||.. .|++++.+|+.+.++++++.|+++|.+||+||+.
T Consensus 698 ~~~~y~~~~~e~d~~YWRGp-IW~~~NyL~i~aL~~y~~~~g~~~~~a~~~y~~Lr~nli~nv~~~~~~tg~~~E~Y~~~ 776 (801)
T PF03200_consen 698 SDPFYGPGENEHDPSYWRGP-IWIPINYLLIEALRRYGYYYGPYQERAKEIYKELRKNLINNVYKEYKRTGYFWEQYNPE 776 (801)
T ss_pred CCccccccCCccCCCcccCc-cchhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccEEEeECCC
Confidence 23332 399999 9999999999999999942 4678889999999999999999999999999999
Q ss_pred cCCccCCCccccCCCCccccHHHHHHHHHHh
Q 047407 253 KCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 283 (294)
Q Consensus 253 ~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~ 283 (294)
||...| ...+.|||++|+|+|.++|
T Consensus 777 tG~g~g------~~~FtGWtslv~~im~e~Y 801 (801)
T PF03200_consen 777 TGRGQG------AHPFTGWTSLVVLIMAEQY 801 (801)
T ss_pred CCcccC------CCCCCchHHHHHHHHhccC
Confidence 865222 2467789999999998876
No 10
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-32 Score=259.97 Aligned_cols=271 Identities=19% Similarity=0.306 Sum_probs=197.2
Q ss_pred CCcchHHHHHHHHHHHcC------C--HHHHHHHHHHHHHHHHHHhhCCCcccc-c---c-----CCCCe---------e
Q 047407 4 SQPPLLSAMVYDIYNRTG------D--LDLVKKALSALLKEHQFWNSGIHKVNI-Q---E-----DHGRN---------H 57 (294)
Q Consensus 4 sqPP~~~~~v~~~y~~t~------D--~~fL~~~~p~l~k~~~~w~~~r~~~~~-~---~-----~~G~~---------~ 57 (294)
-+||.+.++|..+.+.-. | ..||+++||+|.+++.||.+....... . + ..|+. +
T Consensus 502 aNPPTLllav~~~~~~~~~~~~~~~r~~~fL~r~fprLl~~f~Wf~~sQ~G~~~~~~~~~n~~YrWrGR~~~~~t~lnp~ 581 (849)
T KOG2161|consen 502 ANPPTLLLAVYRLLNREREMYGREDRSLTFLKRLFPRLLKWFTWFRKSQEGKNVFEEGFDNEGYRWRGRDLPTGTTLNPH 581 (849)
T ss_pred CCCceeHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHhhhhhhhcccCCcccccccccceeEeccCCCCCCceeccc
Confidence 479999999999987521 2 489999999999999999865421110 0 0 01110 1
Q ss_pred eceeeecCCCCCCC--CcHHH-----------HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeee
Q 047407 58 TLSRYYGMWNKLRP--ESSTI-----------MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYW 124 (294)
Q Consensus 58 ~l~~y~~~~~~prp--es~~~-----------~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~ 124 (294)
.|...- ++.||. .+-.| +.+.|-.||+.+|..+.-......-.+.++.+...+|||+.+.|+|+.
T Consensus 582 ~L~SGl--DDyPRAs~Ps~~ElhvDl~~W~~lasrsl~~iae~lg~~~~E~~~a~~e~~~~e~L~~~HW~ee~~~y~D~g 659 (849)
T KOG2161|consen 582 CLSSGL--DDYPRASHPSVLELHVDLRCWVGLASRSLNRIAEFLGETEAEYATAITELECKENLVQNHWSEEDQAYCDFG 659 (849)
T ss_pred cccccc--cccccccCchHHHHhhhhHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHHHhccChhhCeeeecc
Confidence 122211 233443 22222 567899999999987722224455556779999999999999999988
Q ss_pred cCCCcccch-----------hhhccCCC-----C-ccceehhhhHHHhccCCCCchHHHHHHHHHhhhcC-ccccccccc
Q 047407 125 ISNRTSSQE-----------CQRWKGSN-----Q-SNNAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSSG-FLGAAGIAT 186 (294)
Q Consensus 125 ~~~~~~~~~-----------~~~~~~~~-----~-~~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~~-~~~~~Gi~t 186 (294)
.++.+..-. ..+-++.. . ...+...+++|++++++|.+..++.++++.|.+++ +++|+||+|
T Consensus 660 ~h~~dv~~~~~p~~g~~~r~~~r~v~~~~p~~e~v~~h~GYvSl~P~mlrLlp~~S~rL~~~Ldli~D~~~lwSpYGlrS 739 (849)
T KOG2161|consen 660 NHTEDVSITPEPSIGKQFRGLVRRVDWFVPNLELVDRHIGYVSLFPFMLRLLPATSPRLTKLLDLISDENELWSPYGLRS 739 (849)
T ss_pred CChhhccccccCCcccchhhhheeccccCCcceeeecccceeehhhhHHhhcCCCchHHHHHHHHhcCcccccCcchhhh
Confidence 776443211 00000110 1 23566788999999999998889999999998875 679999987
Q ss_pred ----c-cC---CC-CC--CCCCCCCCchHHHHHHHHHHh-cCcH------HHHHHHHHHHHHHHHHHHHHHhhcCcccee
Q 047407 187 ----S-LT---RS-RE--QWDFPNGWAPLQHMIVEGLAK-SGLQ------EAKSMAQDIAMRWINTNYVAYKETGAMHEK 248 (294)
Q Consensus 187 ----s-~~---~~-~~--~W~gPnvW~~~~~l~~~gL~~-yg~~------~~~~~A~~la~~~~~~~~~~~~~~g~~~E~ 248 (294)
+ ++ ++ .+ ||||| ||.|+|||++.+|++ |.+. .|++++.+|+.+.+.++.+.|.+||.|||+
T Consensus 740 LS~~s~yym~~Nte~d~pYWRGp-IW~N~NYLiLsaL~~~Y~~~~gp~~~nA~~iyeELRaNlv~Nv~k~~~~tG~~wE~ 818 (849)
T KOG2161|consen 740 LSRSSPYYMKRNTEHDPPYWRGP-IWMNVNYLILSALRHFYLYVPGPYQSNAAKIYEELRANLVGNVSKQWQQTGYFWEN 818 (849)
T ss_pred hhhcCCccccccCCCCCcccccc-eeeehHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHhhccceeeee
Confidence 1 22 23 23 99999 999999999999999 6543 477899999999999999999999999999
Q ss_pred eccccCCccCCCccccCCCCccccHHHHHHHHHHh
Q 047407 249 YDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 283 (294)
Q Consensus 249 Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~ 283 (294)
||+.||... | ...+.|||+.|+++|.+.|
T Consensus 819 Yd~~tG~G~---g---a~~FtGWTaLVl~imse~y 847 (849)
T KOG2161|consen 819 YDPRTGRGL---G---ARHFTGWTALVLLIMSENY 847 (849)
T ss_pred cCCCCCCcc---c---cccccchHHHHHHHHHhcc
Confidence 999986522 2 2468899999999998866
No 11
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=99.88 E-value=5e-21 Score=177.88 Aligned_cols=249 Identities=16% Similarity=0.199 Sum_probs=172.7
Q ss_pred CcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCC-ccccccCCCCee----eceeeecC------CCCCCCCc
Q 047407 5 QPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIH-KVNIQEDHGRNH----TLSRYYGM------WNKLRPES 73 (294)
Q Consensus 5 qPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~-~~~~~~~~G~~~----~l~~y~~~------~~~prpes 73 (294)
.+|+|.+++.+|++.|+|.+||++++|.++..++|..+..+ .+.+...+|... ..+.-|.+ ...||+..
T Consensus 85 at~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~ 164 (370)
T PF06202_consen 85 ATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGA 164 (370)
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCc
Confidence 57999999999999999999999999999999998766543 122211344321 11222322 22456522
Q ss_pred HHH-------HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccce
Q 047407 74 STI-------MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNA 146 (294)
Q Consensus 74 ~~~-------~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~ 146 (294)
-.| +.+.++++++..+++ .+..|+++|+++|++|++.||+++.|.|.|....+ +.....+
T Consensus 165 ~vEIqal~y~AL~~~~~la~~~~~~-~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~------------~~~d~~i 231 (370)
T PF06202_consen 165 AVEIQALWYNALRFAAELAEKFGDE-LAARYREWAERLKESFEKRFWDEDRGYYADALDGD------------KEPDDSI 231 (370)
T ss_pred chHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCC------------CCCCccc
Confidence 122 446788888877766 78999999999999999999999999999986443 1222233
Q ss_pred ehhhh--HHHhccCCCCchHHHHHHHHHhhhcCccccccccc-c----cCCC----------CCCCCCCCCCchHHHHHH
Q 047407 147 FTSNF--VPIWIDLFNSNTCIVEKVKKSFQSSGFLGAAGIAT-S----LTRS----------REQWDFPNGWAPLQHMIV 209 (294)
Q Consensus 147 ~~s~~--~PL~~g~~~~~~~~~~~~~~~l~~~~~~~~~Gi~t-s----~~~~----------~~~W~gPnvW~~~~~l~~ 209 (294)
.+... +.|+.+++++++ ++++++.+. +++++|+||+| + .|++ ..|.+|+ |||..+-+++
T Consensus 232 rpN~~~a~~L~~~~l~~~~--a~~vl~~~~-~~L~tp~GlRTLs~~~~~Y~p~y~g~~~~rd~sYHnGs-vWpw~~g~~~ 307 (370)
T PF06202_consen 232 RPNQLIALSLPPGLLDPEQ--AKKVLDRVE-EELLTPWGLRTLSPSDPRYNPIYEGDQDSRDMSYHNGS-VWPWDNGIYA 307 (370)
T ss_pred ccCchhHHhcCCccCCHHH--HHHHHHHHH-HHcCCCCchhcccCCCCCcCCCCCCccccCcccccCCC-cCcCcHHHHH
Confidence 33333 346678888764 478888774 57789999987 2 2444 4699999 9999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh--hcCccceeeccccCCccCCCccccCCCCccccHHHHHH
Q 047407 210 EGLAKSGLQEAKSMAQDIAMRWINTNYVAYK--ETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLA 278 (294)
Q Consensus 210 ~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~--~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~ 278 (294)
+||.++|... +.+.+++..+++....... .-|.+.|-||......+ .......||.|.+|.
T Consensus 308 ~al~r~g~~~--~~~~~~~~~ll~~~~~~~~~~~~~~lpEl~dg~~~~~p------~gc~~QAWS~a~ilr 370 (370)
T PF06202_consen 308 EALLRYGFDE--EEAIREAKSLLEGFEEHLQEFGLGRLPELFDGDPPHYP------RGCSPQAWSVAEILR 370 (370)
T ss_pred HHHHHhCccc--hHHHHHHHHHHHHHHHHHhhccCCCcchhcCCCCCCCC------CCCHHHHHHHHHhhC
Confidence 9999999841 2455556666654333222 25789999995532111 124567999998873
No 12
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.8e-20 Score=182.00 Aligned_cols=247 Identities=17% Similarity=0.234 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeec-eeeecC------CCCCC---CCcHH
Q 047407 6 PPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTL-SRYYGM------WNKLR---PESST 75 (294)
Q Consensus 6 PP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l-~~y~~~------~~~pr---pes~~ 75 (294)
.|+++.++.+|+..|+|.+|+++++|.+...++|+.+.-+.-...+.+|...+. ++-|-+ ...|| |....
T Consensus 341 t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~ 420 (641)
T COG3408 341 TPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAIN 420 (641)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHH
Confidence 689999999999999999999999999999999998875431111222322211 222321 12344 32211
Q ss_pred H----HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhh
Q 047407 76 I----MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNF 151 (294)
Q Consensus 76 ~----~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (294)
+ ..+.+..+|.++++.++++.|++.|+++++.+++.||++ + .|+|..+... +.+.+..+...+
T Consensus 421 al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~F~~~fw~~-~-~f~dl~~~~~-----------~~~~r~~~~~a~ 487 (641)
T COG3408 421 ALQYYALKAALRLANLLGDEEDAARLEKIARRLKESFEAKFWNP-T-GFYDLALDDK-----------DVPIRPNFSNAI 487 (641)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhCc-c-chHhhhccCC-----------CcccCccceecc
Confidence 1 234567788888888899999999999999999999999 3 3778876642 345555667779
Q ss_pred HHHhccCCCCchHHHHHHHHHhhhcCccccccccc-c----cCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHH
Q 047407 152 VPIWIDLFNSNTCIVEKVKKSFQSSGFLGAAGIAT-S----LTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQD 226 (294)
Q Consensus 152 ~PL~~g~~~~~~~~~~~~~~~l~~~~~~~~~Gi~t-s----~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~ 226 (294)
++++.|+++++.+ ++..+....+++|+||+| | .|++.-|++|+ |||++|.+++.|+.|+|..+ ..+.+
T Consensus 488 ~l~~~gi~~~~~~----~~~~l~e~~lltp~GlRTLS~~dp~Y~p~yYH~Gt-VWP~~~gifv~g~~r~G~~~--~~~~~ 560 (641)
T COG3408 488 HLLYTGIVDPERA----VIIRLAEEDLLTPWGLRTLSPDDPRYNPMYYHNGT-VWPHDTGIFVLGLRRYGLKD--IQALE 560 (641)
T ss_pred cccccccCchHHH----HHHHHHHHhccCCccccccCCCCCCcCCCcccCCC-cccchHHHHHHHHHHcCccc--HHHHH
Confidence 9999999987532 444444467889999998 2 36777799999 99999999999999999774 26888
Q ss_pred HHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHH-HHHHh
Q 047407 227 IAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLA-FLEEF 283 (294)
Q Consensus 227 la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~-~~~~~ 283 (294)
+.++.+... .-|.+.|.|+....+.+ .| +..++||+|.+|. ++...
T Consensus 561 ~~~~~~~~a-----~~~~~pE~f~g~~~~~P--~g----c~~QAWS~a~~l~~~~~~~ 607 (641)
T COG3408 561 LFDGLFSSA-----SPGRIPELFDGDSPNRP--KG----CYPQAWSSAEILRSLLQGL 607 (641)
T ss_pred HHHHHhhhc-----ccCCCcccccccCCCCC--CC----cchhhhhHHHHHHHHHHHH
Confidence 888887553 35778999999875421 23 4567999999998 77654
No 13
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=99.65 E-value=3.4e-14 Score=140.53 Aligned_cols=240 Identities=15% Similarity=0.129 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCCCCCc---HHHHHHHHHHHH
Q 047407 9 LSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRPES---STIMELDIASMA 85 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prpes---~~~~~~~lA~la 85 (294)
..++++.|++.|+|.+|+++++|.+++..+|.....+. ++...... .|....++-+.+ ...+.+.+++||
T Consensus 358 ~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~------~l~~~~~~-lWEer~G~~~~t~a~~~aAL~~aa~lA 430 (616)
T TIGR01577 358 ILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDP------ETPLPCRD-LWEEREGVFTYTASAVYGGLDAAAAVA 430 (616)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccC------CCCCCCCc-cceecCCccCccHHHHHHHHHHHHHHH
Confidence 44677888899999999999999999999987775431 11000011 122211111111 011446789999
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhh-HHHhccCCCCchH
Q 047407 86 QIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNF-VPIWIDLFNSNTC 164 (294)
Q Consensus 86 ~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~PL~~g~~~~~~~ 164 (294)
+.+|+++.++.|++.|++++++|++.+|+++.|.|.+..-.. .....+.+|-+ +|+-+|+.++++.
T Consensus 431 ~~lGd~~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~-------------~~~~~vDaSlL~l~~~~g~l~~~Dp 497 (616)
T TIGR01577 431 DKLGEKRLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLM-------------VLDKTIDISILGISVPFNLIAPDDE 497 (616)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCC-------------CCCCcccHHHHhHHHhcCCCCCCCh
Confidence 999999889999999999999999999999999998754221 11223444433 4455899988776
Q ss_pred HHHHHHHHhhhcCccc--ccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHH----------HHHHHHHHHHH
Q 047407 165 IVEKVKKSFQSSGFLG--AAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAK----------SMAQDIAMRWI 232 (294)
Q Consensus 165 ~~~~~~~~l~~~~~~~--~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~----------~~A~~la~~~~ 232 (294)
++.+.++.+.+ .+.. ++||... ..+.|-.| |.|...+.++++.+.+.|..... +.|+++.
T Consensus 498 r~v~Tv~~I~~-~L~~~~~ggi~RY--~~D~y~~g-~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll---- 569 (616)
T TIGR01577 498 RMVKMAEAIEK-HLTSPIVGGIKRY--ENDPYVGG-NPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLL---- 569 (616)
T ss_pred HHHHHHHHHHH-HhcccCCCeeeCC--CCCCCCCC-CcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHH----
Confidence 55555666653 2333 4555432 22223334 79999999999999998865310 1344444
Q ss_pred HHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHHHh
Q 047407 233 NTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEF 283 (294)
Q Consensus 233 ~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~ 283 (294)
+.+...-..+|.|.|++|+.++... ...+.+||++.+|..+..+
T Consensus 570 ~~~~~~~~~~Gll~Eqvd~~~g~~~-------g~~Pl~wSHa~~i~a~~~l 613 (616)
T TIGR01577 570 KWVMDHRTDLGLLPEQVDKETGKPA-------WAVPLGWSHAMFLLTVLDL 613 (616)
T ss_pred HHHHhcCCCCCCCccccCCCCCCCC-------CcCCcccchHHHHHHHHHH
Confidence 4333333467999999999874332 2467899999998876544
No 14
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=99.62 E-value=7.3e-15 Score=142.44 Aligned_cols=222 Identities=17% Similarity=0.243 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeec---CCCCCCCCc------HHHHH
Q 047407 8 LLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYG---MWNKLRPES------STIME 78 (294)
Q Consensus 8 ~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~---~~~~prpes------~~~~~ 78 (294)
.+..+++.||+++||.+||++.||.|++.++|+.+..+. . ......+.+..|-. +...+.+.. |..+.
T Consensus 208 ~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l 284 (509)
T PF05592_consen 208 AWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLERRVDD-G--LDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYAL 284 (509)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTB-T-S--SB-CCSB--S-SS----TT---SCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCc-c--ccCCCCCceeecCCccCcccccchHHHHHHHHHHHHH
Confidence 457789999999999999999999999999998876542 0 00001122333210 111111211 22356
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhccC
Q 047407 79 LDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWIDL 158 (294)
Q Consensus 79 ~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~g~ 158 (294)
+.+|+||+.||++++++.|+++|+++|++|++.|||+++|.+- + . -..++.+||++|+
T Consensus 285 ~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~~-----~------------~-----sq~~~alAl~~gl 342 (509)
T PF05592_consen 285 RAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGYA-----D------------G-----SQHANALALLFGL 342 (509)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEEC-----T------------T-----SHCHHHHCHHCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCccc-----C------------C-----chHHHHHHHHhch
Confidence 7899999999999999999999999999999999999999331 1 1 1468899999999
Q ss_pred CCCchHHHHHHHHHhhhcCccccc-ccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHH-----HH
Q 047407 159 FNSNTCIVEKVKKSFQSSGFLGAA-GIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMR-----WI 232 (294)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~-Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~-----~~ 232 (294)
+|+++. .+.+.+.|.+. +...+ -+.++.+ ...+++++|.+.|+.+ .|.+++.+ |.
T Consensus 343 ~p~~~~-~~~~~~~l~~~-~~~~~~~~~~g~~--------------g~~~~~~~L~~~g~~~---~a~~~~~~~~~~~w~ 403 (509)
T PF05592_consen 343 VPEEER-AAAALKRLAKR-IAANGYHLSTGFI--------------GSPYLLEALFRAGRAD---GAYDLLTQRDYPSWG 403 (509)
T ss_dssp C-HHHH-TCHCHCHCHHC-CHCCCHS--TCCC---------------CHHHHHHHHHCCHHC---CHHHHHHHHHHHHCH
T ss_pred hhhhhh-HHHHHHHHHHH-HHhcCCCcCcccc--------------cHHHHHHHHHHcCCHH---HHHHHHHhccccchh
Confidence 986531 12333333211 10101 1222211 2268899999999874 56666543 44
Q ss_pred HHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHHH
Q 047407 233 NTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEE 282 (294)
Q Consensus 233 ~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~~ 282 (294)
.++.. -..++||.++...+.. .. ...-=+|.+++.-.|.+.
T Consensus 404 ~ml~~---g~tT~wE~w~~~~~~~--~~----~S~~H~w~~~p~~~l~~~ 444 (509)
T PF05592_consen 404 YMLDQ---GATTLWEYWDGDGGDP--PN----RSLCHAWSAGPTYWLYRY 444 (509)
T ss_dssp HHHCT---T-SS--SS-STT-TCT--T-----S-SSBGGG-THHHHHHHC
T ss_pred HHHhC---CCCEEEEecCccCCCC--CC----CCCCCCcchhHHHHHHHH
Confidence 44332 2357999999743110 01 123348988887666553
No 15
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=99.56 E-value=1.2e-13 Score=133.87 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=128.0
Q ss_pred cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceee----ecCC------CCCCCCcHH
Q 047407 6 PPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRY----YGMW------NKLRPESST 75 (294)
Q Consensus 6 PP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y----~~~~------~~prpes~~ 75 (294)
+|+|.+++.+|++.|+|.+++++++|.|+.+++++....+.....|.+|. ++.- |.+. .+||...-.
T Consensus 350 tLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~~~~i~~d~dGL---i~~g~~lTWMDa~~g~~~~tPR~G~~V 426 (575)
T TIGR01561 350 SLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGNDFAIGMDNDLI---FHKGAPLTWMDAKVDERAVTPRAGAAC 426 (575)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCcEEEECCCcc---EeCCCCCCCCCCCCCCccCCCCCCccH
Confidence 68999999999999999999999999999999988776442111244553 2221 4332 256643222
Q ss_pred H-------HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCC--ccce
Q 047407 76 I-------MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQ--SNNA 146 (294)
Q Consensus 76 ~-------~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~--~~~~ 146 (294)
| +.+.|+.+++.+|+. +..|+++|+++|++|++.||+++.|.++|+.-.... +.. ....
T Consensus 427 EInALwYnAL~~~a~la~~~g~~--a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~v~~d~~----------~~~~~d~s~ 494 (575)
T TIGR01561 427 EINALWYNALKTAEFLGNELGED--AESLEEKAAGVAKNFAEKFINPDGNCLFDLIHQDEA----------GNQVKDKAI 494 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEecCCC----------CCccccccc
Confidence 2 456899999999973 678999999999999999999999988887533210 111 1112
Q ss_pred ehhhhHHHh--ccCCCCchHHHHHHHHHhhhcCccccccccc-c----cCCCC----------CCCCCCCCCchHHHHHH
Q 047407 147 FTSNFVPIW--IDLFNSNTCIVEKVKKSFQSSGFLGAAGIAT-S----LTRSR----------EQWDFPNGWAPLQHMIV 209 (294)
Q Consensus 147 ~~s~~~PL~--~g~~~~~~~~~~~~~~~l~~~~~~~~~Gi~t-s----~~~~~----------~~W~gPnvW~~~~~l~~ 209 (294)
-+..++.+- .++++++. +++++++.+ .+.+++|+||+| + .|++. .|-+|+ |||.+.=..+
T Consensus 495 RPNql~A~sL~~~ll~~~~-~~~~vl~~v-~~~Lltp~GlRTLsp~d~~Y~p~Y~g~~~~Rd~aYHqGt-vWpwl~G~y~ 571 (575)
T TIGR01561 495 RPNQIFAISLPFPIIDDES-IAKAILDLI-EKDLLRPFGLKSLSRDDPLYKGQYKGDALSRDTAYHNGS-LPPWLHGALV 571 (575)
T ss_pred CCCceeHhhCCCCCCCHHH-HHHHHHHHH-HhhccCCcccccCCCCCCCcCCCCCCCccccCCcCcCCC-cCccchhhHH
Confidence 244444332 46777651 236777544 467889999998 2 24332 699999 9998766555
Q ss_pred HH
Q 047407 210 EG 211 (294)
Q Consensus 210 ~g 211 (294)
++
T Consensus 572 ~A 573 (575)
T TIGR01561 572 KA 573 (575)
T ss_pred hh
Confidence 44
No 16
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=99.33 E-value=2.6e-12 Score=119.00 Aligned_cols=207 Identities=21% Similarity=0.344 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeece---eeecCCCCCCCCcHHH-----H
Q 047407 6 PPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLS---RYYGMWNKLRPESSTI-----M 77 (294)
Q Consensus 6 PP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~---~y~~~~~~prpes~~~-----~ 77 (294)
+|.|+++|+++|..|||.+||++++|.+++.++|... .|. |.+|....-. +..|.....-+.+|.. +
T Consensus 101 ~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~-~D~----d~dGl~e~~g~~D~TyD~~~~~G~say~~~L~laA 175 (365)
T PF04685_consen 101 NPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS-WDR----DGDGLPENPGHPDQTYDDWSMYGPSAYCGGLWLAA 175 (365)
T ss_dssp ----------------------EHHHHHHHHHHHHHH-SB------TTS-BEEET---SSSTT-EEEEEEHHHHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHh-hCC----CCCCCCCCCCCCccccccCCeeCCCHHHHHHHHHH
Confidence 5889999999999999999999999999999998776 332 4555422111 0011111111233322 4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEe--eecCCCcccchhhhccCCCCccce---ehhhhH
Q 047407 78 ELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLD--YWISNRTSSQECQRWKGSNQSNNA---FTSNFV 152 (294)
Q Consensus 78 ~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D--~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~~ 152 (294)
.+.+++||+++|+++.+++|++.+++.++++++.|||.+ ||. ++.... ... +...+.+ ..+.+.
T Consensus 176 L~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWnGe---yy~~~~d~~~~-~~~-------~~~aDQl~Gqw~a~~~ 244 (365)
T PF04685_consen 176 LRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWNGE---YYRQWYDSKYQ-NGD-------GCMADQLCGQWWARLL 244 (365)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEETT---EE--EE---TT-S-E-------ES-TT-SS--EEHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhCHh---heeeeeccCCC-CCC-------eEEeChhhHHHHHHHc
Confidence 568999999999999999999999999999999999998 776 441110 000 1111111 122222
Q ss_pred HHhccCCCCchHHHHHHHHHhhhcCcc----cccccccccC------CCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHH
Q 047407 153 PIWIDLFNSNTCIVEKVKKSFQSSGFL----GAAGIATSLT------RSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKS 222 (294)
Q Consensus 153 PL~~g~~~~~~~~~~~~~~~l~~~~~~----~~~Gi~ts~~------~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~ 222 (294)
-| -+++|+++ +++.++.+.+-++. .+.|++.... .+.-|-+ .||+-++|-+...+...|..+
T Consensus 245 gl-~~v~~~e~--v~sAL~sI~~~N~~~~~~~~~G~~n~~~p~g~~~~~~~q~~--evW~G~~y~~Aa~mi~~G~~~--- 316 (365)
T PF04685_consen 245 GL-GDVLDEEK--VKSALRSIYEYNVKYFLGGEMGAVNGVWPDGKPDTSSPQSN--EVWTGVEYAVAAHMIQEGMVE--- 316 (365)
T ss_dssp HH-TT-S-HHH--HHHHHHHHHHHHEE-S-BTTTBGGGGS-T--------------------------------------
T ss_pred CC-cCCCCHHH--HHHHHHHHHHhcCeEccCCCCcEEEeeeccccccccccccc--ccccccccccccccccccccc---
Confidence 33 34566653 45666666543332 3344443211 1111111 399999999999999999873
Q ss_pred HHHHHHHHHHHHHH
Q 047407 223 MAQDIAMRWINTNY 236 (294)
Q Consensus 223 ~A~~la~~~~~~~~ 236 (294)
.|.++++...++..
T Consensus 317 e~~~~~~~~~~~~~ 330 (365)
T PF04685_consen 317 EGLEIAKGIYDRYY 330 (365)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 57777666665443
No 17
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.99 E-value=1e-08 Score=100.77 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhc
Q 047407 77 MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWI 156 (294)
Q Consensus 77 ~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~ 156 (294)
.....++||+..|+...++.|+..|+.+++.|.+.+++++.|.|.-+.-+ ...+++.++-+-...+
T Consensus 425 gLd~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~--------------~~~~~vDasll~l~~f 490 (612)
T COG3387 425 GLDAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGR--------------KPDDTVDASLLGLVLF 490 (612)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccCCeeehhcCC--------------CccccccHHHhhcccc
Confidence 34578999999999999999999999999999999999998877633321 1344566666656668
Q ss_pred cCCCCchHHHHHHHHHhhhcCccccc-ccccccCCCCCCCCC---CC-CCchHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 047407 157 DLFNSNTCIVEKVKKSFQSSGFLGAA-GIATSLTRSREQWDF---PN-GWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRW 231 (294)
Q Consensus 157 g~~~~~~~~~~~~~~~l~~~~~~~~~-Gi~ts~~~~~~~W~g---Pn-vW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~ 231 (294)
|+.+++..++-++++.|.+. +..++ ||.... . +++|| +| .|+.++.++++.+.+.|..+ .|++|...+
T Consensus 491 g~i~~~D~~~~~t~~~I~~~-L~~~~~gi~RY~--~-~~~d~~~~~~~~w~i~t~Wl~~~~~~~g~~~---~a~~ll~~l 563 (612)
T COG3387 491 GFIPPDDPRILATVEAIERE-LLVDGGGIRRYN--N-EYDDGLGGDNGPWIITTLWLSEYYLALGRLD---EAKKLLEWL 563 (612)
T ss_pred CccCCCCHHHHHHHHHHHHH-HhhcCCcEEcCc--c-ccccccCCCCCcceeehhHHHHHHHHccchH---HHHHHHHHH
Confidence 99998776556666666532 33444 554422 1 44444 34 99999999999999999984 677775433
Q ss_pred HHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHHHhCC
Q 047407 232 INTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGW 285 (294)
Q Consensus 232 ~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~~~ 285 (294)
+ ..-..+|-+.|++|+.+| +.....+.+||++.+|..+.++-.
T Consensus 564 ~----~~a~~~gll~EQv~~~~G-------~~~g~~PlawSha~~I~ai~~l~~ 606 (612)
T COG3387 564 L----AFASPLGLLPEQVDDGSG-------EPLGAFPLAWSHAEFIIAIRELEE 606 (612)
T ss_pred H----HhcCCCCCcchhhcCCCC-------ccCCCCcchhhhHHHHHHHHHHHh
Confidence 3 233578999999999863 444456789999999998887643
No 18
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=98.98 E-value=2.1e-07 Score=91.97 Aligned_cols=235 Identities=11% Similarity=0.025 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCCCCCcHHH---HHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 047407 28 KALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRPESSTI---MELDIASMAQIVGDNRTAESFLKAAQAR 104 (294)
Q Consensus 28 ~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prpes~~~---~~~~lA~la~~lG~~~~a~~~~~~A~~l 104 (294)
..++.+++..+|...+-.. .+ .| -|.....++|-.+.- .....++||+.+|+++.++.|++.|+.+
T Consensus 370 ~~~~~vk~aadfl~~~~p~---p~-~d-------~WEer~g~~~~T~a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i 438 (648)
T TIGR01535 370 FYDKMLKPAADFIVKNGPK---TG-QE-------RWEEIGGYSPSTLAAEIAGLTAAADIAEQNGDAGSAQKYRETADNW 438 (648)
T ss_pred HHHHHHHHHHHHHHHcCCC---CC-CC-------cccccCCcCchhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3566777777765544210 01 11 144333444422211 3456899999999998899999999999
Q ss_pred HHHHHhhccccC-----CCeEEeeecCCCcccchhhhccCC----CCccceehhhhHHHhccCCCCchHHHHHHHHHhhh
Q 047407 105 KQAINSVFWNKE-----KGQWLDYWISNRTSSQECQRWKGS----NQSNNAFTSNFVPIWIDLFNSNTCIVEKVKKSFQS 175 (294)
Q Consensus 105 ~~ai~~~lWdee-----~g~y~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~ 175 (294)
++.|.+.+|+++ .+.|.-.....+...........+ ...+++.++-+....+|+.+++..++.+.++.+++
T Consensus 439 ~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vDaSlL~L~~~G~~~~dDPri~~Tl~aIe~ 518 (648)
T TIGR01535 439 QKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLDPGFLELVRLGVKSPDDPHILATLKEIDS 518 (648)
T ss_pred HHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccCHHHHHHHHcCCcCCCCHHHHHHHHHHHH
Confidence 999999999999 888876632111000000000000 11345666666455699999887666666666653
Q ss_pred cCccc--c--ccccccc---C---CCCCCCCC---CCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047407 176 SGFLG--A--AGIATSL---T---RSREQWDF---PNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKET 242 (294)
Q Consensus 176 ~~~~~--~--~Gi~ts~---~---~~~~~W~g---PnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~ 242 (294)
. +.. | +|+.... + ..+.-|+| .|+||-++-...+.....|.. |. .+++.+...-..+
T Consensus 519 ~-L~~~~~~~g~~~RY~~Dgyg~~~~~~~~~~~~~G~~Wpi~T~~~~~y~l~~~~~-----a~----~~l~~~~~~a~~~ 588 (648)
T TIGR01535 519 T-IKVDTPKGPSWYRYTHDGYGEPAKTEAYDGTGKGRLWPLLTGERGHYELAAGKD-----AT----PYLKAMEKFANEG 588 (648)
T ss_pred H-hccCCCCCCeEEecCCCCCCCcCCCCCccCCcCCceeehhhhHHHHHHHHcCCh-----HH----HHHHHHHHhcCcC
Confidence 2 221 1 2343321 1 11222222 379999999888876655553 32 5666555555567
Q ss_pred CccceeeccccCCc-cC-CCcccc-CCCCccccHHHHHHHHHHh
Q 047407 243 GAMHEKYDVEKCGD-IG-GGGEYI-PQTGFGWSNGVVLAFLEEF 283 (294)
Q Consensus 243 g~~~E~Y~~~~~~~-~g-~gGey~-~~~~fgWT~~v~L~~~~~~ 283 (294)
|-|+|+.++.++.. .+ --|+.. ...+..||+|.+|.++..+
T Consensus 589 g~lpEQV~d~~~~~~~~~~~G~pt~Sa~PL~WsHA~yi~l~~s~ 632 (648)
T TIGR01535 589 GMIPEQVWDQTDLPSRGLFYGLPTDSASPLNWAHAEYVKLLRSN 632 (648)
T ss_pred CCcCcccCCCCCCcccccccCCcCCccccchhhHHHHHHHHHHh
Confidence 89999998876211 11 114553 5678999999999998865
No 19
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.85 E-value=2.2e-07 Score=96.78 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHHhhccccCC-CeEEeeec--CCCcccchhhh--------ccCC
Q 047407 77 MELDIASMAQIV-----GDNRTAESFLKAAQARKQAINSVFWNKEK-GQWLDYWI--SNRTSSQECQR--------WKGS 140 (294)
Q Consensus 77 ~~~~lA~la~~l-----G~~~~a~~~~~~A~~l~~ai~~~lWdee~-g~y~D~~~--~~~~~~~~~~~--------~~~~ 140 (294)
+.+.++++++.. |.+.....|+++|++++++|.+.||+++. +.=||++- +++ .++|. +.+-
T Consensus 1232 AL~~~~~l~~~~~~~~~g~~~~~~~~~~wa~~ik~~Fe~~F~~~~~~~~lyDv~~~~vnr---rgIykD~~~s~~~~~D~ 1308 (1464)
T TIGR01531 1232 ALRFLIELKEKGVFKRSGVETQKWSYIEWNQKIQDNFEKRFFVDESQDADYDVAKLGVNR---RGIYKDSYGSTKPWTDY 1308 (1464)
T ss_pred HHHHHHHHHHhcCcCcCCcccchhhHHHHHHHHHHHHhhhcCCCcccCccccccchhhcc---ccccccccCCCCCCCCc
Confidence 446788888776 66555667999999999999999999653 33234331 111 11111 1111
Q ss_pred CCccceehhhhHHHhccCCCCchHHHHHHHHHhhhcCccccccccc-cc----C-----CC----------C-CCCCCCC
Q 047407 141 NQSNNAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSSGFLGAAGIAT-SL----T-----RS----------R-EQWDFPN 199 (294)
Q Consensus 141 ~~~~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~~~~~~~Gi~t-s~----~-----~~----------~-~~W~gPn 199 (294)
+.++.+-.+..+| ..+++++ ++.++++.. ..+++|.|++| +. | ++ | .|-+||
T Consensus 1309 qlRPN~~iA~sla--~~l~~~~--~a~~~L~~v--~~LltP~GlRTLdP~D~~Y~g~Y~g~~dsrD~~t~kg~aYHqG~- 1381 (1464)
T TIGR01531 1309 QLRPNFAIAMTVA--PELFVPE--KAWKALTIA--EVLLGPLGMKTLDPSDWNYRGYYNNGEDSDDFATAKGRNYHQGP- 1381 (1464)
T ss_pred ccCCCceEEEeCC--cccCCHH--HHHHHHHHH--HHhccCCccccCCCCCcCCCCccCCchhhccccccccccccCCC-
Confidence 2222222222222 1334444 346666655 34779999987 11 1 11 1 599999
Q ss_pred CCchHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHHHhhc--CccceeeccccCCccCCCccccCCCCccccHH
Q 047407 200 GWAPLQHMIVEGLAKSGLQ---EAKSMAQDIAMRWINTNYVAYKET--GAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNG 274 (294)
Q Consensus 200 vW~~~~~l~~~gL~~yg~~---~~~~~A~~la~~~~~~~~~~~~~~--g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~ 274 (294)
+|+...=..++++.+.+.. ..+..+.+...+.+....+...+. |.+.|-||......+ .| .....||.|
T Consensus 1382 eW~WllG~fl~A~lk~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~g~l~El~dgdgp~~~--~g----c~aQAWSva 1455 (1464)
T TIGR01531 1382 EWVWPIGYFLRARLHFHFKTGPRCQAAAIKPVSYLLQQLYYHLKESPWRGLPELTNKDGEYCN--DS----CPTQAWSVA 1455 (1464)
T ss_pred cCccchhHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCC--CC----CHHHHHHHH
Confidence 9999999999999987543 211233344455665555444444 589999998743211 22 456799999
Q ss_pred HHHHHHH
Q 047407 275 VVLAFLE 281 (294)
Q Consensus 275 v~L~~~~ 281 (294)
.+|+++.
T Consensus 1456 elLr~l~ 1462 (1464)
T TIGR01531 1456 CLLELLY 1462 (1464)
T ss_pred HHHHHHh
Confidence 9999754
No 20
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=98.71 E-value=7.8e-06 Score=75.37 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=80.6
Q ss_pred eehhhhHHHhccCCCCchHHHHHHHHHhhhc--Ccccccccc--------------cc--c-CCCCCCCCCCCCCchHHH
Q 047407 146 AFTSNFVPIWIDLFNSNTCIVEKVKKSFQSS--GFLGAAGIA--------------TS--L-TRSREQWDFPNGWAPLQH 206 (294)
Q Consensus 146 ~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~--~~~~~~Gi~--------------ts--~-~~~~~~W~gPnvW~~~~~ 206 (294)
++..|++..++|+++++|+ +++++.++.. ++..+..+. |. . .-+.+|++|. .||-+.|
T Consensus 292 f~lGNlLAiLsgLat~~qa--~~I~~lIe~~~~~L~g~mPlki~yPale~~eWri~tg~dpKN~PwsYHNGG-~WP~LlW 368 (436)
T PF12899_consen 292 FSLGNLLAILSGLATPEQA--EAIMDLIEERWEDLVGPMPLKICYPALEGEEWRIYTGCDPKNTPWSYHNGG-SWPVLLW 368 (436)
T ss_pred hhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHhhhccccchhhccCCCCCCCCccccCcCcCccccccccCC-CcHHHHH
Confidence 4578999999999999875 6666666432 221111111 10 1 2357799999 9999999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHH
Q 047407 207 MIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 281 (294)
Q Consensus 207 l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~ 281 (294)
+.+-++.+-|..+ +|++.... ..+...+.+ +.|+||..+|...|-. .....+||+|.+|..-.
T Consensus 369 ~~~aA~ik~gr~~---lA~~al~~----a~~rL~~de-wpEyydGktGrp~Gkq----ar~~QTWSaAgyLlA~~ 431 (436)
T PF12899_consen 369 FLTAALIKMGRPE---LAERALEA----AENRLSKDE-WPEYYDGKTGRPMGKQ----ARKYQTWSAAGYLLAKH 431 (436)
T ss_pred HHHHHHHHcCCHH---HHHHHHHH----HHHhhcccC-CcccccCCCCCccccc----ccccCchHHHHHHHHHH
Confidence 9999999999985 56644333 222223344 8999999986544322 13567999999986543
No 21
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=6.6e-06 Score=78.16 Aligned_cols=202 Identities=12% Similarity=0.184 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCee---eceeeecCCCCCCCCcHHH-----HHH
Q 047407 8 LLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNH---TLSRYYGMWNKLRPESSTI-----MEL 79 (294)
Q Consensus 8 ~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~---~l~~y~~~~~~prpes~~~-----~~~ 79 (294)
-|..+|++++..|+|.+||+++||.+++.++|-++.+- +.+|... .+-.-.+.+..---.+|-- +..
T Consensus 446 ~fVLlvYrdf~~T~D~eFL~e~y~~iv~~iD~~~~~d~-----d~DgiP~~~g~~d~~fDa~~i~G~ssy~~sl~iaal~ 520 (721)
T COG4354 446 DFVLLVYRDFKFTNDREFLKEVYPVIVEAIDWLKRFDQ-----DNDGIPENSGAMDNTFDATRIQGHSSYCGSLFIAALI 520 (721)
T ss_pred cEEeeehhhhhhcccHHHHHHHHHHHHHHHHHHHhhcc-----cCCCCCcccCCcccccccceeechhhhhhHHHHHHHH
Confidence 46688999999999999999999999999997653321 3344311 0100011110000012211 222
Q ss_pred HHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceeh
Q 047407 80 DIASMAQIVGDN-----------RTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFT 148 (294)
Q Consensus 80 ~lA~la~~lG~~-----------~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (294)
++..|+..+++. .....|...-+..++++|+.|||.+ ||-.+-. ..++++-+
T Consensus 521 A~l~is~~l~~~~~~~a~~e~~~~~~~~y~~~L~~~~e~~~~~LwNGk---Yy~lws~--------------~~~~s~lA 583 (721)
T COG4354 521 AALEISKYLLDNAQLEALNEASKNYVDFYNTWLKEAREAFNKYLWNGK---YYILWSN--------------SGNDSVLA 583 (721)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCce---eEecccc--------------cCchhhhH
Confidence 345566666654 2234577778888999999999975 6644411 12222222
Q ss_pred ----hhhHHHhccCCCC-chHHHHHHHHHhhhcCcc-cccccccc------cCCCCC-CCCCCCCCchHHHHHHHHHHhc
Q 047407 149 ----SNFVPIWIDLFNS-NTCIVEKVKKSFQSSGFL-GAAGIATS------LTRSRE-QWDFPNGWAPLQHMIVEGLAKS 215 (294)
Q Consensus 149 ----s~~~PL~~g~~~~-~~~~~~~~~~~l~~~~~~-~~~Gi~ts------~~~~~~-~W~gPnvW~~~~~l~~~gL~~y 215 (294)
..|+.=++|+.+- ++.+++++++.+-+-++- .+++.+.+ ..++.. |=. .+||-+++-++.-|..-
T Consensus 584 sQL~Gqfy~~LLgLpdivdhd~~ksal~sIy~lnf~~~~~~~~n~v~~dgsp~n~~svq~~--s~W~gi~F~laa~m~~~ 661 (721)
T COG4354 584 SQLCGQFYATLLGLPDIVDHDKIKSALESIYDLNFNASEYCAANGVRPDGSPVNPLSVQPL--SVWPGINFALAAHMIQM 661 (721)
T ss_pred HHHHhHHHHHHcCCCcccchHHHHHHHHHHHhhccccccccccCccCCCCCcCCccccccc--ccccchHHHHHHHHHHh
Confidence 3466666776553 334556666665442332 34443321 111100 100 39999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 047407 216 GLQEAKSMAQDIAMRWINTNY 236 (294)
Q Consensus 216 g~~~~~~~A~~la~~~~~~~~ 236 (294)
|.. +++.+++++..+++.
T Consensus 662 Gm~---de~~~~~e~~w~~l~ 679 (721)
T COG4354 662 GMK---DEGFELAENVWNQLK 679 (721)
T ss_pred cch---hhhhHHHHHHHHHHH
Confidence 988 489999998887765
No 22
>PLN02973 beta-fructofuranosidase
Probab=98.33 E-value=0.00025 Score=67.21 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=74.8
Q ss_pred cceehhhhHHHhccCCCCchHHHHHHHHHhhhc--Cccccccccc------c-------cCC----CCCCCCCCCCCchH
Q 047407 144 NNAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSS--GFLGAAGIAT------S-------LTR----SREQWDFPNGWAPL 204 (294)
Q Consensus 144 ~~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~--~~~~~~Gi~t------s-------~~~----~~~~W~gPnvW~~~ 204 (294)
+-++..|++..++++++++|+ +++++.++.. ++...-.++- . -.+ +-+|-+|- .||-+
T Consensus 399 RffslGNllAILs~Lat~~Qs--~aIm~lIe~~w~~Lvg~MPlkicyPaie~~EWri~tG~dpKN~PWSYHNGG-sWP~L 475 (571)
T PLN02973 399 RWFALGNCIAILSSLATPEQS--TAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSYHNGG-SWPVL 475 (571)
T ss_pred chhhhhhHHHHHhccCCHHHH--HHHHHHHHHHHHHHHhcCCcceeccCcCCccceehhccCCCCCccceecCC-CccHH
Confidence 345588999999999999875 5666655431 1111011110 0 012 23455555 99999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHH
Q 047407 205 QHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 281 (294)
Q Consensus 205 ~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~ 281 (294)
.|+..-++.+.|..+ +|++.. ........+++ -.|+||..+|.-.|-. .....+||++-+|.+-.
T Consensus 476 lw~~~aA~iK~gr~~---lA~ral----~~ae~rl~~d~-WpEyyDGktGr~iGkq----ar~yQTWSiAG~LlA~~ 540 (571)
T PLN02973 476 LWLLTAACIKTGRPQ---IARRAI----EVAEARLHKDH-WPEYYDGKVGRYVGKQ----SRKNQTWSVAGYLVAKM 540 (571)
T ss_pred HHHHHHHHHHcCCHH---HHHHHH----HHHHHHhhhcC-ChhhcCCCCCcCccee----ccccCchHHHHHHHHHH
Confidence 999999999999995 555333 22222223344 5999999875433211 12378999998765433
No 23
>PLN02703 beta-fructofuranosidase
Probab=98.28 E-value=0.00027 Score=67.36 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=75.2
Q ss_pred ceehhhhHHHhccCCCCchHHHHHHHHHhhhc--Ccc--ccccc------------cccc---CCCCCCCCCCCCCchHH
Q 047407 145 NAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSS--GFL--GAAGI------------ATSL---TRSREQWDFPNGWAPLQ 205 (294)
Q Consensus 145 ~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~--~~~--~~~Gi------------~ts~---~~~~~~W~gPnvW~~~~ 205 (294)
-++..|++..++++++++|+ +++++.++.. ++. -|..| -|.. .-+-+|-+|- .||-+.
T Consensus 432 ffsLGNlLAILs~Lat~~Qs--~aIm~lIe~~w~~Lvg~MPlkIcyPaie~~EWRi~TG~DpKN~PWSYHNGG-sWP~Ll 508 (618)
T PLN02703 432 FFTLGNLWSIVSSLATNDQS--HAILDLIEAKWAELVADMPLKICYPAMEGEEWRIITGSDPKNTPWSYHNGG-AWPTLL 508 (618)
T ss_pred hhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhccCccccccCCcCCccceeeeCcCCCCCCccccCCC-cchHHH
Confidence 45588999999999999875 5666665431 111 12111 1110 1123455666 999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHH
Q 047407 206 HMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 281 (294)
Q Consensus 206 ~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~ 281 (294)
|+..-++.+.|..+ +|++.. ........+++ -+|+||..+|.-.|-. .....+||++-+|.+-.
T Consensus 509 Wf~~aA~iK~Gr~~---lA~ral----~~ae~rl~~d~-WpEYyDGktGr~iGkq----ar~yQTWSiAGyLlAk~ 572 (618)
T PLN02703 509 WQLTVASIKMGRPE---IAEKAV----ELAERRISLDK-WPEYYDTKRARFIGKQ----ARLYQTWSIAGYLVAKL 572 (618)
T ss_pred HHHHHHHHHcCCHH---HHHHHH----HHHHHHhhhcc-ChhhccCCCCcCccee----ccccCchHHHHHHHHHH
Confidence 99999999999995 555333 22222223344 5999999875433211 12377999998775543
No 24
>PLN03005 beta-fructofuranosidase
Probab=98.25 E-value=0.00017 Score=68.09 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=75.3
Q ss_pred ceehhhhHHHhccCCCCchHHHHHHHHHhhhc--Ccc--ccccc--cc--c-------cCC----CCCCCCCCCCCchHH
Q 047407 145 NAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSS--GFL--GAAGI--AT--S-------LTR----SREQWDFPNGWAPLQ 205 (294)
Q Consensus 145 ~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~--~~~--~~~Gi--~t--s-------~~~----~~~~W~gPnvW~~~~ 205 (294)
-++..|++..++++++++|+ +++++.++.. ++. -|..| |. . -.+ +-+|-+|- .||-+.
T Consensus 379 ffslGNllAILs~Lat~~Qs--~aIm~lIe~~w~~Lv~~MPlkIcyPa~e~~eWri~tG~dpKN~PWSYHNGG-sWP~Ll 455 (550)
T PLN03005 379 WFALGNCVSILSSLATPDQS--MAIMDLLEHRWEELVGEMPLKICYPCLEGHEWRIVTGCDPKNTRWSYHNGG-SWPVLL 455 (550)
T ss_pred ehhhhhHHHHHhccCCHHHH--HHHHHHHHHHHHHHhccCCcceeecccCCccceecccCCCCCCCccccCCC-cchHHH
Confidence 45588999999999999875 5666665511 110 11111 11 0 012 23455565 999999
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHH
Q 047407 206 HMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLE 281 (294)
Q Consensus 206 ~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~ 281 (294)
|+..-++.+.|..+ +|++.. ........+++ -+|+||..+|.-.|-. .....+||++-+|.+-.
T Consensus 456 w~~~aA~iK~gr~~---lA~ral----~~ae~rl~~d~-WpEyydGktGr~iGkq----ar~~QTWSiAG~Lla~~ 519 (550)
T PLN03005 456 WQLTAACIKTGRPQ---IARRAV----DLIESRLHRDC-WPEYYDGKLGRYVGKQ----ARKYQTWSIAGYLVAKM 519 (550)
T ss_pred HHHHHHHHHcCCHH---HHHHHH----HHHHHHhhhcC-chhhcCCCCCccccee----ccccCchHHHHHHHHHH
Confidence 99999999999995 555333 22222223344 5999999875433211 13677999998765543
No 25
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.00015 Score=70.67 Aligned_cols=186 Identities=18% Similarity=0.271 Sum_probs=112.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCee--ecee-eecCCCCCCCCcH-----HHHHHHHHHHHHHhC
Q 047407 18 NRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNH--TLSR-YYGMWNKLRPESS-----TIMELDIASMAQIVG 89 (294)
Q Consensus 18 ~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~--~l~~-y~~~~~~prpes~-----~~~~~~lA~la~~lG 89 (294)
-.|||..||+.++|...+.+++...- |. |.||... ++.. -.|.+..--+.+| ..+.+.++.||+++|
T Consensus 571 ~~tgd~~flk~~wpsv~~ime~l~~f-DK----D~DGmIEN~GfpDQTYD~W~~tGvSAYCGgLWlAALqa~~amA~~~g 645 (879)
T KOG2119|consen 571 VATGDEKFLKAVWPSVYAIMEYLEQF-DK----DNDGMIENEGFPDQTYDAWSMTGVSAYCGGLWLAALQAASAMARQIG 645 (879)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHhh-cc----cCCcccccCCCCCccccceEEecchhhhhHHHHHHHHHHHHHHHHhC
Confidence 35899999999999999999875544 21 4555421 1110 0011111112222 225578899999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCcccee---hhhhHHH-hcc---CCCCc
Q 047407 90 DNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAF---TSNFVPI-WID---LFNSN 162 (294)
Q Consensus 90 ~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~PL-~~g---~~~~~ 162 (294)
++..+..|+..-++-|.+..+.||| |.||.||...+ + .++.+- ..+.+-+ -+| ++|.+
T Consensus 646 ~~~~~~~f~~klekak~~ye~kLWN---GsYfnyD~s~s-----------~-~s~sImaDQlaGqWy~~a~gl~~i~~~~ 710 (879)
T KOG2119|consen 646 DPNTQDYFNNKLEKAKDVYEKKLWN---GSYFNYDESSS-----------G-SSSSIMADQLAGQWYARACGLPPIFPEE 710 (879)
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhcC---CceeccccCCC-----------C-cchhhHHHhHhhHHHHHhcCCCccCchH
Confidence 9999999999999999999999998 57998986542 1 122222 2222222 122 33333
Q ss_pred hHHHHHHHHHhhhcCcc-cccc--------ccc-----ccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHH
Q 047407 163 TCIVEKVKKSFQSSGFL-GAAG--------IAT-----SLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIA 228 (294)
Q Consensus 163 ~~~~~~~~~~l~~~~~~-~~~G--------i~t-----s~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la 228 (294)
.+.+.++.|-+-+.. +.+| +|+ +...+.+ ||+-++|=+.--+..-|..+ .+.+.|
T Consensus 711 --~vrsAL~tIy~~NVm~~~~G~~GAVNGm~p~G~VD~ssiQS~E------vW~GvtYalAAtMIqeG~~e---~~FqTA 779 (879)
T KOG2119|consen 711 --KVRSALDTIYDFNVMKFKGGRMGAVNGMLPSGKVDTSSIQSRE------VWAGVTYALAATMIQEGLVE---KGFQTA 779 (879)
T ss_pred --HHHHHHHHHHhhceeeecCCceeccccccCCCccccccceehh------hhccHHHHHHHHHHHHhhHH---hhhhhh
Confidence 456777777654422 2222 222 2233444 88888887777777777663 677777
Q ss_pred HHHHHH
Q 047407 229 MRWINT 234 (294)
Q Consensus 229 ~~~~~~ 234 (294)
.....+
T Consensus 780 ~G~y~~ 785 (879)
T KOG2119|consen 780 SGIYEA 785 (879)
T ss_pred hhhHHH
Confidence 666655
No 26
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=97.88 E-value=0.00064 Score=63.56 Aligned_cols=238 Identities=17% Similarity=0.293 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHhhCCCccccccCCCCe-eeceeeecC---------------------
Q 047407 9 LSAMVYDIYNRTGDLDLVK-KALSALLKEHQFWNSGIHKVNIQEDHGRN-HTLSRYYGM--------------------- 65 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~fL~-~~~p~l~k~~~~w~~~r~~~~~~~~~G~~-~~l~~y~~~--------------------- 65 (294)
+..+.+.||+.|||.+|+. ....++++-++-|...+++- .+++|.. ..-.+|...
T Consensus 133 ~l~La~~y~~~Tgd~~~f~~~~~~A~~~il~~~~~eq~~t--~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~pv~~tG 210 (424)
T PF06824_consen 133 FLQLAYQYWKATGDTSFFDEDWLRAVRLILDTWRTEQRPT--YDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGNPVAYTG 210 (424)
T ss_dssp HHHHHHHHHHHH--GTTSSHHHHHHHHHHHHHHHHTTG--------SSSCS-S---BESBSSGGGS-HHHHT-S----SS
T ss_pred HHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHhh--hccccccCCCcceeeccCCCCCccccCCCcCCcCCCCC
Confidence 5678899999999998774 46778888888888776521 0122210 000111000
Q ss_pred --CCCCCCCc------HH-----H---HHHHHHHHHHHhCCch---hHHHHHHHHHHHHHHHHhhcccc--CCCeEEeee
Q 047407 66 --WNKLRPES------ST-----I---MELDIASMAQIVGDNR---TAESFLKAAQARKQAINSVFWNK--EKGQWLDYW 124 (294)
Q Consensus 66 --~~~prpes------~~-----~---~~~~lA~la~~lG~~~---~a~~~~~~A~~l~~ai~~~lWde--e~g~y~D~~ 124 (294)
...-||.. |. . ....+++|++.++..+ .+++.+++|++++++|.++.=-+ +-|.-|.|.
T Consensus 211 li~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~~~~~~~~~la~~~~~la~eI~~gI~~~giv~h~~~g~iyAYE 290 (424)
T PF06824_consen 211 LIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRALGWDDSAELAERARALADEIRAGIEKHGIVEHPKFGKIYAYE 290 (424)
T ss_dssp S-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE-SE
T ss_pred ceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHheEEeCCCCCeEEEEE
Confidence 01123311 10 0 2235666666665544 68889999999999999985443 555666677
Q ss_pred cCCCcccchhhhccCCCCccceehhhh-HHHhccCCCCchHHHHHHHHHhhhcC---ccccc----ccccccCCCCCCCC
Q 047407 125 ISNRTSSQECQRWKGSNQSNNAFTSNF-VPIWIDLFNSNTCIVEKVKKSFQSSG---FLGAA----GIATSLTRSREQWD 196 (294)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~PL~~g~~~~~~~~~~~~~~~l~~~~---~~~~~----Gi~ts~~~~~~~W~ 196 (294)
++... -+...+.. . -+|-+ +| ++|.++.+..+-.+..+.+.++. ....| ||-++-...
T Consensus 291 VDG~G----~~~~mDDA--N--vPSLLSlP-ylGf~~~~DpvYqnTR~~iLS~~~NPyy~~G~~~~GiGsPHt~~----- 356 (424)
T PF06824_consen 291 VDGFG----NHLLMDDA--N--VPSLLSLP-YLGFCSKDDPVYQNTRRFILSPEGNPYYFSGKAASGIGSPHTPP----- 356 (424)
T ss_dssp E-SSS-----EE----S--S--SS-STTHH-HHTSS-TT-HHHHHHHHHHTSTT-STTEEEESSEEEE--TTT-T-----
T ss_pred ecCCC----CccccCCC--C--CchHhhhh-hcCCCCCCcHHHHHHHHHHhCCCCCCccccCCCcCCCCCCCCCC-----
Confidence 65310 00000100 1 13333 55 67887776555566666665433 12222 232211111
Q ss_pred CCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHH
Q 047407 197 FPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVV 276 (294)
Q Consensus 197 gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~ 276 (294)
+++||- -++++||-.-...| +. +..+..+++. .-+|.|+|-+|+.++. .+. ..-|+|.|+.+
T Consensus 357 -~~iWPm--sl~~~~lTs~d~~E---i~-~~L~~L~~t~----~gtGlmHES~d~~~~~------~~T-R~WFaWaNslF 418 (424)
T PF06824_consen 357 -GYIWPM--SLAMQGLTSDDDEE---IR-ECLRMLKRTT----AGTGLMHESFDVDDPS------KFT-RPWFAWANSLF 418 (424)
T ss_dssp -TEEEHH--HHHHHHHT-S-HHH---HH-HHHHHHHHTS----TTSSS--SEEETTEEE------EEE--S-BHHHHHHH
T ss_pred -CCccHH--HHHHHHhcCCCHHH---HH-HHHHHHHhcc----CCCCceeccccCCCCc------ccC-cHHHHHHHHHH
Confidence 136764 57778886644432 33 3332333332 2479999999998743 232 36799999998
Q ss_pred HHHH
Q 047407 277 LAFL 280 (294)
Q Consensus 277 L~~~ 280 (294)
=.|+
T Consensus 419 ~eli 422 (424)
T PF06824_consen 419 GELI 422 (424)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6664
No 27
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.014 Score=53.08 Aligned_cols=237 Identities=18% Similarity=0.302 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHhhCCCccc------ccc---------CCCCeeeceeeec-CCCCCCC
Q 047407 9 LSAMVYDIYNRTGDLD-LVKKALSALLKEHQFWNSGIHKVN------IQE---------DHGRNHTLSRYYG-MWNKLRP 71 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~-fL~~~~p~l~k~~~~w~~~r~~~~------~~~---------~~G~~~~l~~y~~-~~~~prp 71 (294)
..++++.||+.|||.+ |=.+...+++..++-|....++-. .++ .+|+.... .+.. .+.+-||
T Consensus 140 PiqLAYl~wk~Tg~t~~Fde~f~~a~~~il~~~~~eQ~h~~~spY~F~R~t~r~~dTL~~~G~G~~~-a~tGM~wSgFRP 218 (434)
T COG3538 140 PIQLAYLYWKATGDTSQFDEDFRQAVETILRVWKVEQDHETDSPYRFERDTDRKSDTLGRAGKGAPT-APTGMTWSGFRP 218 (434)
T ss_pred HHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhHhhccCCCCCeeeeccccccchhhhhCCCCCCc-CcccceecCcCC
Confidence 3578899999999875 334555667777788887755320 111 11110000 1111 1123344
Q ss_pred Cc------HH-----HH---HHHHHHHHH-HhCCchhHHHHHHHHHHHHHHHHhh--ccccCCCeEEeeecCCCcccchh
Q 047407 72 ES------ST-----IM---ELDIASMAQ-IVGDNRTAESFLKAAQARKQAINSV--FWNKEKGQWLDYWISNRTSSQEC 134 (294)
Q Consensus 72 es------~~-----~~---~~~lA~la~-~lG~~~~a~~~~~~A~~l~~ai~~~--lWdee~g~y~D~~~~~~~~~~~~ 134 (294)
.. |. .+ ...+.+|.+ ..++.+-|.+.+.+++++.+.|.+. .=++.-|-.|.|.++.-
T Consensus 219 SDDAC~YgYliPsNmFaVVvl~y~~ei~~~~~~~~~~a~~a~~L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~------ 292 (434)
T COG3538 219 SDDACEYGYLIPSNMFAVVVLSYLQEILEALPHDAEIARQAKELANEIQQGIEQFGKMDHPKGGEIYAYEVDGL------ 292 (434)
T ss_pred CccchhcccccccchhhhhhHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHhceecCCCCCeeEEEEecCC------
Confidence 21 11 01 123444544 4566777888888888998888875 44556666777876631
Q ss_pred hhccCCCC--cc-ceehhhhHHHhccCCCCchHHHHHHHHHhhhcC--ccccc----ccccccCCCCCCCCCCCCCchHH
Q 047407 135 QRWKGSNQ--SN-NAFTSNFVPIWIDLFNSNTCIVEKVKKSFQSSG--FLGAA----GIATSLTRSREQWDFPNGWAPLQ 205 (294)
Q Consensus 135 ~~~~~~~~--~~-~~~~s~~~PL~~g~~~~~~~~~~~~~~~l~~~~--~~~~~----Gi~ts~~~~~~~W~gPnvW~~~~ 205 (294)
|.. .+ .--+|-+..-++|....+..+-.+.-+.+.+.. +...| ||-++- -+.. +|||.
T Consensus 293 -----Gn~l~MDDaNvPSLLa~PYLG~c~~dDpvY~~TRk~iLS~eNPYy~eG~~a~GiGSpH-Tp~~-----yvWpi-- 359 (434)
T COG3538 293 -----GNQLFMDDANVPSLLAAPYLGFCEKDDPVYQNTRKTILSSENPYYYEGKYASGIGSPH-TPDH-----YVWPI-- 359 (434)
T ss_pred -----CceeeccCCCchhhhhhhhhccccCCCHHHHHHHHHHHhcCCCceecceeeccCCCCC-CCCc-----ccchH--
Confidence 221 11 112455555678888776544444455544322 22222 443321 1111 39985
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHH
Q 047407 206 HMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFL 280 (294)
Q Consensus 206 ~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~ 280 (294)
-|+++||...-..+ -++|..-++.+- .-||.|+|-||+.... .|. ..=|+|.|..+-.|+
T Consensus 360 aLaiqgLTa~D~~e----k~~iL~~L~~td----aGTg~MHE~f~vd~P~------~fT-R~WFsWAN~mF~Eli 419 (434)
T COG3538 360 ALAIQGLTANDDSE----KKEILDMLKATD----AGTGLMHEGFDVDDPE------QFT-REWFSWANMMFCELI 419 (434)
T ss_pred HHHHhhcccCChHH----HHHHHHHHHhcc----CCccceecccCCCCHH------Hhh-hHHHHHHHHHHHHHH
Confidence 58889998776653 444443344332 2479999999998643 222 356999999876554
No 28
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=97.40 E-value=0.0063 Score=58.35 Aligned_cols=187 Identities=17% Similarity=0.158 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH------HhhccccCCCeEEeeecC--CCcccchhhhccCCCCccceeh
Q 047407 77 MELDIASMAQIVGDNRTAESFLKAAQARKQAI------NSVFWNKEKGQWLDYWIS--NRTSSQECQRWKGSNQSNNAFT 148 (294)
Q Consensus 77 ~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai------~~~lWdee~g~y~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (294)
+....+++|+.+|+...++.|++.|+++++.| .+.+|+ +.+.|.-.... .+. ... ....+....
T Consensus 193 AL~~a~~~a~~~g~~~~~~~~~~~a~~i~~~l~~~~~~~~g~~~-~~~~~~~~~~~~~~~~---~~~----~~~~~~lD~ 264 (448)
T PF00723_consen 193 ALLRAANLAELFGDPGDAERWRETADEIRERLEGWYGLERGFWP-EFGYFIRIYGSFSGNS---EQV----QGYRSGLDA 264 (448)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHEESGGGBT-TSSBESEESSSEETTT---CCE----EEGSGS-BT
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhhccccccccC-CCCeEEEecCCccccc---hhh----hcchhhHHH
Confidence 34567899999999999999999999999999 234554 45556533321 000 000 001234455
Q ss_pred hhhHHHhccCCCCch----------HHHHHHHHHhhhcCcccccccccc-----c--CCCCCCCC----CCCCCchHHHH
Q 047407 149 SNFVPIWIDLFNSNT----------CIVEKVKKSFQSSGFLGAAGIATS-----L--TRSREQWD----FPNGWAPLQHM 207 (294)
Q Consensus 149 s~~~PL~~g~~~~~~----------~~~~~~~~~l~~~~~~~~~Gi~ts-----~--~~~~~~W~----gPnvW~~~~~l 207 (294)
+.++...++..|++. .++-+.++.|.+. +...+.|... . |....|=+ .-|.|.-.+..
T Consensus 265 slll~~~~~~~~~~d~~~~~~~p~sp~~~~T~~~i~~~-l~~~~~in~g~~~~~~~RY~~D~y~~~~~~~G~pw~l~T~w 343 (448)
T PF00723_consen 265 SLLLLPLFGFVPPDDVDDERFQPHSPRVLNTLKAIEEE-LRVDYPINPGDIDPGIGRYPEDVYDDGLGSEGNPWFLCTFW 343 (448)
T ss_dssp HHHHHHHTTSSTTT-S-TTTTTTTSHHHHHHHHHHHHC-TTTTEGGGTT-STTSEBSCTT--GGSSSBTGS-CBHHHHHH
T ss_pred HHHHHHHccCCCcccccccccccccHHHHHHHHHHHHH-HHHhcCCCccccCccceecccccccCccCCCCccceeeech
Confidence 554444566666654 4445555555432 3333333221 1 11111110 12689888888
Q ss_pred HHHHHHhc-----CcH-------H----HHHH-----------------------HHHHHHHHHHHHHHHHhhcCcccee
Q 047407 208 IVEGLAKS-----GLQ-------E----AKSM-----------------------AQDIAMRWINTNYVAYKETGAMHEK 248 (294)
Q Consensus 208 ~~~gL~~y-----g~~-------~----~~~~-----------------------A~~la~~~~~~~~~~~~~~g~~~E~ 248 (294)
+++-|.+. |.. . -+++ -.+++..+++.+.. -...|.|.|+
T Consensus 344 ~ae~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~~d~~l~~~~~-~~~~g~lsEq 422 (448)
T PF00723_consen 344 AAEALYAEAYRRAGRGRDWPIVREARGFFEKFVSSKQITVGIPYNSEDFISLPKALFEYADSFLRVVRE-ANRNGLLSEQ 422 (448)
T ss_dssp HHHHHHHHHHHHHHHTEBEEECTTTHHHHHHHTTTGSSESEEEETSHHHHHHHHHHHHHHHHHHHHHHH-S-TTS---SE
T ss_pred hHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccccccccccCchhhhhcccchHHHHHHHHHHHhc-CCcCcEeeee
Confidence 66655432 210 0 0111 12356667766665 6678999999
Q ss_pred eccccCCccCCCccccCCCCccccHHHHHHHH
Q 047407 249 YDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFL 280 (294)
Q Consensus 249 Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~ 280 (294)
+|..+|... ......||.+.+|.+.
T Consensus 423 ~~~~~G~~~-------ga~pltwS~~~~l~~~ 447 (448)
T PF00723_consen 423 FNRYTGFMQ-------GARPLTWSYASFLRAG 447 (448)
T ss_dssp E-TTT--EE-------SSSS-HHHHHHHHHHH
T ss_pred eecccCCcC-------CCCchhhhhhhhHhhc
Confidence 999875432 2467899999998763
No 29
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.032 Score=56.85 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhc
Q 047407 77 MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWI 156 (294)
Q Consensus 77 ~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~ 156 (294)
..+....+|+.+|+.+.+..|++.++.+++++.+.-|| |-||-+....+.. .=.. ....-.++.+.++-+.++.
T Consensus 766 tlq~F~~lak~r~d~~r~~~~~~~~ea~~~~~~~~~wD---g~wy~r~~~d~g~-~lgs--~e~~E~qI~~i~qs~sVlS 839 (1056)
T COG3459 766 TLQTFKELAKARGDEARADTWAKHVEALREALETNGWD---GEWYRRGYGDDGT-PLGS--PEDEECQIDSIPQSWSVLS 839 (1056)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCC---cceEEeccccCCC-cccC--CCCcccceeeeccchhhhh
Confidence 45678899999999999999999999999999999999 4466555443110 0000 0011234566788899999
Q ss_pred cCCCCchH--HHHHHHHHhhhcCc---ccc-----ccccccc-------CCCCCCCCCCCCCchHHHHHHHHHHhcCcHH
Q 047407 157 DLFNSNTC--IVEKVKKSFQSSGF---LGA-----AGIATSL-------TRSREQWDFPNGWAPLQHMIVEGLAKSGLQE 219 (294)
Q Consensus 157 g~~~~~~~--~~~~~~~~l~~~~~---~~~-----~Gi~ts~-------~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~ 219 (294)
|..+++++ ..+.+.++|.++.. .+| .+-|+.. .+.|.|.--+++ +++.+|.+.|..
T Consensus 840 g~gd~~ra~kaMd~v~k~L~~pdgvrL~tppf~~~~~~~gyiK~y~pgvREnGgQYtHa~~------w~i~Alak~G~a- 912 (1056)
T COG3459 840 GEGDKERAEKAMDSVMKYLVDPDGVRLFTPPFSYTKGDPGYIKRYPPGVRENGGQYTHAAT------WVILALAKMGRA- 912 (1056)
T ss_pred CCCChHHHHHHHHHHHHhccCccccEecCCcccccCCCCCeeecCCcccccccceeecccH------HHHHHHHhhccH-
Confidence 99988653 13444455543321 111 1111110 122445555544 488999999997
Q ss_pred HHHHHHHHHHHHH
Q 047407 220 AKSMAQDIAMRWI 232 (294)
Q Consensus 220 ~~~~A~~la~~~~ 232 (294)
+.|.++-...-
T Consensus 913 --~eAw~~f~~in 923 (1056)
T COG3459 913 --DEAWELFDKIN 923 (1056)
T ss_pred --HHHHHHHHhcC
Confidence 46877764443
No 30
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.04 E-value=1.3 Score=41.23 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCC-CCeeeceeeecCCCCCC---CCcHHH--HHHHHHH
Q 047407 10 SAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDH-GRNHTLSRYYGMWNKLR---PESSTI--MELDIAS 83 (294)
Q Consensus 10 ~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~-G~~~~l~~y~~~~~~pr---pes~~~--~~~~lA~ 83 (294)
+.+....|+.++|.++++ .+++.++|+.++-. |++ |. +..-.+....|. +..|.. ....++.
T Consensus 59 i~~~a~a~~~~~~~~~l~----~A~~~~~fl~~~~~-----d~~~Gg---~~~~~~~~g~~~~~~~~l~~~a~~l~ala~ 126 (384)
T cd00249 59 VYCFAVAYLLGWRPEWLE----AAEHGLEYLDRHGR-----DPDHGG---WYFALDQDGRPVDATKDLYSHAFALLAAAQ 126 (384)
T ss_pred HHHHHHHHHhcCChhHHH----HHHHHHHHHHHhCc-----CCCCCC---EEEEEcCCCCCcccccchHHHHHHHHHHHH
Confidence 445556677788877654 45666677666432 333 42 222222122222 222322 3456788
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEe
Q 047407 84 MAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLD 122 (294)
Q Consensus 84 la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D 122 (294)
++++.|++ .|.+.|+++.+.|.+.+| ++.|.|++
T Consensus 127 ~~~at~d~----~~l~~A~~~~~~l~~~~~-~~~g~~~~ 160 (384)
T cd00249 127 AAKVGGDP----EARALAEETIDLLERRFW-EDHPGAFD 160 (384)
T ss_pred HHHhcCCH----HHHHHHHHHHHHHHHHhc-cCCCcccC
Confidence 88888764 589999999999999999 55665553
No 31
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.87 E-value=1.5 Score=40.73 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecC-CCCCCCCcHHHHHHHHHHHHHHh
Q 047407 10 SAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGM-WNKLRPESSTIMELDIASMAQIV 88 (294)
Q Consensus 10 ~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~-~~~prpes~~~~~~~lA~la~~l 88 (294)
..++-.+|+.++|.++++.+-..+....+.+... +|. .......+ ...|..+++......|..++++.
T Consensus 121 l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~---------~g~--~~~~~~~~~~~~~~~~~~~h~~~all~l~~~t 189 (384)
T cd00249 121 LLAAAQAAKVGGDPEARALAEETIDLLERRFWED---------HPG--AFDEADPGTPPYRGSNPHMHLLEAMLAAYEAT 189 (384)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccC---------CCc--ccCCCCCCCCCCCCCChhHHHHHHHHHHHHHh
Confidence 4455578899999988876666655555433211 111 01111111 11222233333234566777887
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeee
Q 047407 89 GDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYW 124 (294)
Q Consensus 89 G~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~ 124 (294)
|+ ..|.++|+++.+.+.+.+++++.|.++...
T Consensus 190 gd----~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~ 221 (384)
T cd00249 190 GE----QKYLDRADEIADLILDRFIDAESGVVREHF 221 (384)
T ss_pred CC----HHHHHHHHHHHHHHHHHhcCcccCeEEEEE
Confidence 74 358999999999999999999889887543
No 32
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=91.87 E-value=0.15 Score=47.63 Aligned_cols=36 Identities=22% Similarity=0.643 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHhhCC
Q 047407 9 LSAMVYDIYNRTGDLDLVKK-ALSALLKEHQFWNSGI 44 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~fL~~-~~p~l~k~~~~w~~~r 44 (294)
.+.+++.||..|+|.+||++ .+|.|...-+||.+.-
T Consensus 110 Ia~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~ 146 (370)
T PF03632_consen 110 IAYAIWQYYQATGDEEFLREYGAEILFETARFWASRV 146 (370)
T ss_dssp HHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHhe
Confidence 46789999999999999976 5899999899999763
No 33
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=4.3 Score=40.54 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=57.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCC--CCCCCcHHHHHHHHHHHHHHhCCch
Q 047407 15 DIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWN--KLRPESSTIMELDIASMAQIVGDNR 92 (294)
Q Consensus 15 ~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~--~prpes~~~~~~~lA~la~~lG~~~ 92 (294)
.-++.++|.++++. .++..+|+.+.-- .++ .+-+|.+... ..-.|.|......|..++++.++.
T Consensus 422 ~a~~~~~d~~~l~~----A~~~~~fi~~~l~-------~~r--l~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~- 487 (667)
T COG1331 422 EAGRVLGDPEYLEA----AERAADFILDNLY-------VDR--LLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDL- 487 (667)
T ss_pred HHHHHcCChHHHHH----HHHHHHHHHHhhc-------ccc--hheeeecCcccccccchhHHHHHHHHHHHHHhhCcH-
Confidence 33456788887764 4455555544310 011 1223322221 122356655556677788888753
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCeEEeeec
Q 047407 93 TAESFLKAAQARKQAINSVFWNKEKGQWLDYWI 125 (294)
Q Consensus 93 ~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~ 125 (294)
.|.+.|..+.+.+.+.|||++-| |||..-
T Consensus 488 ---~yL~~A~~L~~~~i~~f~d~~gG-f~~t~~ 516 (667)
T COG1331 488 ---AYLEKAIELADEAIADFWDDEGG-FYDTPS 516 (667)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCC-cccCCC
Confidence 59999999999999999999966 777653
No 34
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=88.62 E-value=15 Score=33.64 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhCCCcccccc-CCCCeeeceeeecCCC--CCCCCcHHHH--HHHHHHHHHHhCCchhH
Q 047407 20 TGDLDLVKKALSALLKEHQFWNSGIHKVNIQE-DHGRNHTLSRYYGMWN--KLRPESSTIM--ELDIASMAQIVGDNRTA 94 (294)
Q Consensus 20 t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~-~~G~~~~l~~y~~~~~--~prpes~~~~--~~~lA~la~~lG~~~~a 94 (294)
.++.++++ .+++-++|..++-. | .+| ++....+... .++...|..+ ...+|. ++..|++
T Consensus 36 ~g~~~~l~----~A~~~~~fl~~~~~-----D~~~G---g~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~~tg~~--- 99 (346)
T PF07221_consen 36 LGRPEYLE----LAEHGFDFLRKHFR-----DPEYG---GWYRSLDDGGPLDPQKDLYDQAFALLALAE-ARATGDP--- 99 (346)
T ss_dssp TTSHHHHH----HHHHHHHHHHHTTB-----TTTTS---SBSSEEETTEEEE--EEHHHHHHHHHHHHH-HHCTT-T---
T ss_pred cCchhHHH----HHHHHHHHHHHhcc-----cCCCC---CEEEEeCCCCCCccccchHHHHHHHHHHHH-HHHhCCh---
Confidence 67777555 46677777665531 2 223 2322222222 1122345542 345666 6677765
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCeEEeee
Q 047407 95 ESFLKAAQARKQAINSVFWNKEKGQWLDYW 124 (294)
Q Consensus 95 ~~~~~~A~~l~~ai~~~lWdee~g~y~D~~ 124 (294)
++.+.|+++.+.|.+.+||++.|.|.+..
T Consensus 100 -~~~~~A~~~~~~l~~~~~d~~~g~~~~~~ 128 (346)
T PF07221_consen 100 -EALELAEQTLEFLERRFWDPEGGGYRESF 128 (346)
T ss_dssp -THHHHHHHHHHHHHHHTEETTTTEE--EE
T ss_pred -hHHHHHHHHHHHHHHHhcccccCcceecc
Confidence 35788999999999999999999887654
No 35
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=3.4 Score=41.28 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=72.0
Q ss_pred cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCCCC--Cc--HHH--HHH
Q 047407 6 PPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRP--ES--STI--MEL 79 (294)
Q Consensus 6 PP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prp--es--~~~--~~~ 79 (294)
||.+...+.+++..++|..-++-+.-.|.+-. . +. |.|.- ..++.||..+...--| |- |+. +.+
T Consensus 211 ~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma-----~-GG--IyDhl--gGGF~RYStD~~WlvPHFEKMLyDnA~l~~ 280 (667)
T COG1331 211 PPHLLLFLLRYSLRTGDERALDMVLRTLDAMA-----R-GG--IYDHL--GGGFFRYSTDREWLVPHFEKMLYDNALLLR 280 (667)
T ss_pred ChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH-----c-cC--Ccccc--CCceeeeecCCceechhHHHHHHHHHHHHH
Confidence 34555566677777888654444444433211 1 11 12221 2378999876655444 31 222 223
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhcc
Q 047407 80 DIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWK 138 (294)
Q Consensus 80 ~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~ 138 (294)
..++.+..+|+. .|+..|+.+..-+.+.||.++-|+|..-|-+....+...|+|+
T Consensus 281 ~y~~ay~~tgd~----~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws 335 (667)
T COG1331 281 AYAEAYRATGDD----LYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWS 335 (667)
T ss_pred HHHHHHHHhCCH----HHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecC
Confidence 456677777864 5999999999999999999999977766655433233344443
No 36
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=86.58 E-value=7.1 Score=35.85 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEee
Q 047407 80 DIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDY 123 (294)
Q Consensus 80 ~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~ 123 (294)
..|.+++ +|+++ |.+.|+...+-|.+.+||++.|.|+-.
T Consensus 29 ~fa~a~~-~g~~~----~l~~A~~~~~fl~~~~~D~~~Gg~~~~ 67 (346)
T PF07221_consen 29 TFARAYR-LGRPE----YLELAEHGFDFLRKHFRDPEYGGWYRS 67 (346)
T ss_dssp HHHHHHH-TTSHH----HHHHHHHHHHHHHHTTBTTTTSSBSSE
T ss_pred HHHHHHh-cCchh----HHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 4666777 88443 888999999999999999998877633
No 37
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=79.16 E-value=0.84 Score=44.42 Aligned_cols=43 Identities=28% Similarity=0.422 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeec
Q 047407 78 ELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWI 125 (294)
Q Consensus 78 ~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~ 125 (294)
.-++|++|+.||++++++.|.++|..-+ .+||+++|++...+.
T Consensus 244 D~~iA~~A~~LG~~~~~~~~~~Rs~ny~-----n~fd~~tgf~~pr~~ 286 (502)
T PF07971_consen 244 DWAIAQMAKALGKKEDADKFLKRSQNYR-----NVFDPETGFFRPRNA 286 (502)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHCCGGGGG-----GGEETTTTCE--B-T
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH-----HHcCCccCCccccCC
Confidence 3579999999999999999999998764 489999998876653
No 38
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=76.56 E-value=7.3 Score=36.39 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCCCCCcH------HH
Q 047407 8 LLSAMVYDIYNRTGDL-----DLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRPESS------TI 76 (294)
Q Consensus 8 ~~~~~v~~~y~~t~D~-----~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prpes~------~~ 76 (294)
.+++++.+.|+.|+|. .+|+.+-.....-...|.+... .| ++ +|..........| ..
T Consensus 92 w~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~c-------gG---Gi--~W~~~~~~~~~~~Kna~sN~~ 159 (370)
T PF03663_consen 92 WWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSC-------GG---GI--WWSIDDTNSGYDYKNAISNGP 159 (370)
T ss_dssp HHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG--------GS----B--EEET----TEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccC-------CC---Cc--cccccccCCCCCcccccchHH
Confidence 3678888999999999 8777544433333233332210 12 22 2331100000111 11
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh-hccccCCCeEEeeecC
Q 047407 77 MELDIASMAQIVGDNRTAESFLKAAQARKQAINS-VFWNKEKGQWLDYWIS 126 (294)
Q Consensus 77 ~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~-~lWdee~g~y~D~~~~ 126 (294)
+....++|++..|+. .|.+.|+++-+=+.+ .|.|+++|.++|-.-.
T Consensus 160 ~~~laarL~~~t~~~----~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~ 206 (370)
T PF03663_consen 160 AAQLAARLYRITGDQ----TYLDWAKKIYDWMRDSGLIDPSTGLVYDGINI 206 (370)
T ss_dssp HHHHHHHHHHHH--H----HHHHHHHHHHHHHHH-HHB--TTS-B--EE-T
T ss_pred HHHHHHHHHHhcCCh----HHHHHHHHHHHHhhcceeEECCCcEEEeCCcc
Confidence 345677888888643 499999999999999 9999999999997633
No 39
>PRK13807 maltose phosphorylase; Provisional
Probab=75.11 E-value=15 Score=37.76 Aligned_cols=36 Identities=28% Similarity=0.598 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHhhCC
Q 047407 9 LSAMVYDIYNRTGDLDLVKK-ALSALLKEHQFWNSGI 44 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~fL~~-~~p~l~k~~~~w~~~r 44 (294)
.+.+++.||..|+|.+||++ -+|.|..-.+||.+.-
T Consensus 430 Iaya~~~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~ 466 (756)
T PRK13807 430 IAYAIYNYTNYTGDESYLKEEGLEVLVEIARFWADRV 466 (756)
T ss_pred HHHHHHHHHHHhCCHHHHHhcCHHHHHHHHHHHHHhe
Confidence 46789999999999999975 6888888889999763
No 40
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=74.80 E-value=86 Score=30.50 Aligned_cols=152 Identities=12% Similarity=0.122 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCccc-----chhhhccCCCCccce--ehh
Q 047407 77 MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSS-----QECQRWKGSNQSNNA--FTS 149 (294)
Q Consensus 77 ~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~-----~~~~~~~~~~~~~~~--~~s 149 (294)
+..++-+|++.||..+ ++..+++-.-..+.-++-||++++.+....-+..+-+ ...|.-+.|.....+ ...
T Consensus 311 n~La~l~l~~~lG~~~--~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~ 388 (557)
T PF06917_consen 311 NPLAQLELARQLGQDD--KEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPADPD 388 (557)
T ss_dssp HHHHHHHHHHHTGGGG--HHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE--HH
T ss_pred CHHHHHHHHHHhCCch--HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCchh
Confidence 4456778899999765 5577888777888889999999998876553321111 112222223322111 244
Q ss_pred hhHHHhccCC-CCchHHHHHHHHHhhh-cCcccccccccc---cCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHH
Q 047407 150 NFVPIWIDLF-NSNTCIVEKVKKSFQS-SGFLGAAGIATS---LTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMA 224 (294)
Q Consensus 150 ~~~PL~~g~~-~~~~~~~~~~~~~l~~-~~~~~~~Gi~ts---~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A 224 (294)
-|+|+...-. +++. .+-.++..|.. .++ ..-|-++. ..+.. -.|+-|-+-+-+++=-+..+...-.++|
T Consensus 389 yll~~vra~~~s~D~-~Lw~~~~~m~~~~gL-Gdig~~~~~~~~~~~~----~~~~sp~~L~allEL~~atq~~~~l~lA 462 (557)
T PF06917_consen 389 YLLPYVRAYRLSRDP-ELWDLARTMAHHFGL-GDIGNAAGKEPRVNMQ----TDNASPYLLFALLELYQATQDARYLELA 462 (557)
T ss_dssp HHHHHHHHHHHS--H-HHHHHHHHHHHHTT--EE-TTBTTBS-EE-TT---------HHHHHHHHHHHHHH--HHHHHHH
T ss_pred HhHHHHHHHHcCCCH-HHHHHHHHHHhhcCc-ccccCccccccccccC----CCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5778766543 3333 23344444431 111 11111110 01110 0123333333333333444544445788
Q ss_pred HHHHHHHHHHHH
Q 047407 225 QDIAMRWINTNY 236 (294)
Q Consensus 225 ~~la~~~~~~~~ 236 (294)
.+|+.+.++..+
T Consensus 463 ~~~g~~l~~~~~ 474 (557)
T PF06917_consen 463 DQVGENLFEQHF 474 (557)
T ss_dssp HHHHHHHHHHHE
T ss_pred HHHHHHHHHHHc
Confidence 888888887644
No 41
>COG3537 Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]
Probab=73.83 E-value=4.2 Score=40.38 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEee
Q 047407 78 ELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDY 123 (294)
Q Consensus 78 ~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~ 123 (294)
.-.+|.+|+.+|++++|+.|+.+++.-++ +||+++|+--.+
T Consensus 490 DfaiA~vAk~lG~te~A~~y~arS~nwrn-----lfn~~tGfmrpR 530 (768)
T COG3537 490 DFAIAQVAKSLGDTEEAKVYQARSQNWRN-----LFNPDTGFMRPR 530 (768)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHh-----hcCccccccccc
Confidence 34689999999999999999999998865 788988865443
No 42
>PF08760 DUF1793: Domain of unknown function (DUF1793); InterPro: IPR014870 This domain is found at the C terminus of a glutaminase protein from fungi []. It is also found as a single domain protein in Bacteroides thetaiotaomicron.
Probab=71.16 E-value=11 Score=31.19 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeec
Q 047407 79 LDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWI 125 (294)
Q Consensus 79 ~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~ 125 (294)
..+++||+.+|+.++++.|...|+.......+.--|.... -+....
T Consensus 4 ~A~s~ia~~~G~~~~a~~Y~~~A~~~a~~W~~~a~~~~g~-H~~L~Y 49 (171)
T PF08760_consen 4 GAMSEIASMLGHTEDAANYSDIAKSYASQWQTLAISTDGD-HYTLAY 49 (171)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhhccCCCC-eEEeec
Confidence 4689999999999999999999999998888876644333 334444
No 43
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=71.09 E-value=66 Score=29.31 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=56.2
Q ss_pred cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCCCCC---cHHH----HH
Q 047407 6 PPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRPE---SSTI----ME 78 (294)
Q Consensus 6 PP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prpe---s~~~----~~ 78 (294)
||+|+++ ...|+|..+++.+...+....++.... .+|. +.+.+... ...+. .+.. +.
T Consensus 130 ~p~l~~~----~~~tgd~~~~~~a~~q~~~~~~~~~d~--------~tGl---~~h~~~~~-~~~~~s~~~WsRG~gW~~ 193 (336)
T PF07470_consen 130 LPFLAWA----GKLTGDPKYLDEAVRQFRLTRKYLYDP--------ETGL---YYHGYTYQ-GYADWSDSFWSRGNGWAI 193 (336)
T ss_dssp HHHHHHH----HHHHTGHHHHHHHHHHHHHHHHHHB-T--------TTSS---BESEEETT-SSSTTST--BHHHHHHHH
T ss_pred HHHHHHH----HHHHCCcHHHHHHHHHHHHHHHhccCC--------CCCc---eeeccCCC-CCcCcccccCcchhhHHH
Confidence 4555544 678999999999988888887763322 2443 22222211 12111 1222 23
Q ss_pred HHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhhccccCCCeEE
Q 047407 79 LDIASMAQIVG-DNRTAESFLKAAQARKQAINSVFWNKEKGQWL 121 (294)
Q Consensus 79 ~~lA~la~~lG-~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~ 121 (294)
.-|+.+.+.|- +......+.+.++++..++.+ +.+ ++|.|+
T Consensus 194 ~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~-~q~-~~G~w~ 235 (336)
T PF07470_consen 194 YGLAEVLEYLPEDHPERDELLEIAKKLADALAR-YQD-EDGLWY 235 (336)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT-TST-TTSBEB
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHh-cCC-CCCCcc
Confidence 34566666663 344456677777777777654 666 788875
No 44
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=70.66 E-value=41 Score=33.08 Aligned_cols=95 Identities=23% Similarity=0.353 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHhhCCCccccccCCCCeeeceeeecCCCCCCC--CcHHHHHHHHHHH
Q 047407 8 LLSAMVYDIYNRTGDLDLVKKALSALLKEHQ-FWNSGIHKVNIQEDHGRNHTLSRYYGMWNKLRP--ESSTIMELDIASM 84 (294)
Q Consensus 8 ~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~-~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~prp--es~~~~~~~lA~l 84 (294)
|++..+.++|+.+++.+||+.+...=.-.-. ||.-+- ..+...++. ....|-..+.++..| .|. .+-.|-.+
T Consensus 581 FlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdggg--YF~Se~~~~-~v~vRlkeDhDGAEPs~nSV--sahNLvrL 655 (786)
T KOG2244|consen 581 FLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGG--YFISEKTDE-DVSVRLKEDHDGAEPSGNSV--SAHNLVRL 655 (786)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCc--eeeeeccCC-CcceeeccccCCCCCCccch--hhhhHHHH
Confidence 4567788999999999999988764333332 665221 111111111 012233334444444 332 23356666
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHhh
Q 047407 85 AQIVGDNRTAESFLKAAQARKQAINSV 111 (294)
Q Consensus 85 a~~lG~~~~a~~~~~~A~~l~~ai~~~ 111 (294)
|.+++ ++.|.++|.++-..+.+.
T Consensus 656 ~~~~~----~e~yl~ka~~ll~~fseR 678 (786)
T KOG2244|consen 656 ASIVA----AESYLNKAHRLLAVFSER 678 (786)
T ss_pred HHHhh----HHHHHHHHHHHHHHHHHH
Confidence 66665 577999998887766553
No 45
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=68.84 E-value=43 Score=31.23 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=54.1
Q ss_pred CcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccC-CCCeeeceeee-cCCCC--CCCC--cHHH--
Q 047407 5 QPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQED-HGRNHTLSRYY-GMWNK--LRPE--SSTI-- 76 (294)
Q Consensus 5 qPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~-~G~~~~l~~y~-~~~~~--prpe--s~~~-- 76 (294)
+-|++.. ..++|+.|+|.. .+...++.++|..+.. +.|+ +|. +...- ...+. .... +|..
T Consensus 157 N~~~~~l-aarL~~~t~~~~----Yl~~A~~~~~W~~~~~----L~d~~~g~---v~Dg~~~~~~c~~~~~~~~TYNqG~ 224 (370)
T PF03663_consen 157 NGPAAQL-AARLYRITGDQT----YLDWAKKIYDWMRDSG----LIDPSTGL---VYDGINIDGNCTNINKTKWTYNQGV 224 (370)
T ss_dssp HHHHHHH-HHHHHHHH--HH----HHHHHHHHHHHHHH-H----HB--TTS----B--EE-TTSSS-B-TT---HHHHHH
T ss_pred hHHHHHH-HHHHHHhcCChH----HHHHHHHHHHHhhcce----eEECCCcE---EEeCCccCCCCCcCCCceechHHHH
Confidence 3444444 447889999886 4455677788766521 1122 243 11111 11111 1112 2322
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEee
Q 047407 77 MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDY 123 (294)
Q Consensus 77 ~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~ 123 (294)
+...++.|++..++. +.|.++|+++.++..+.|+++..|...+.
T Consensus 225 ~l~a~~~Ly~~T~~~---~~yl~~A~~la~~~~~~~~~~~~gil~e~ 268 (370)
T PF03663_consen 225 FLGAAAYLYNATNDE---QTYLDRAEKLADAAINHFFDNGDGILTEE 268 (370)
T ss_dssp HHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHEETT--EE---
T ss_pred HHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHhCCCCCeeeecc
Confidence 334677888887542 28999999999999998999988877665
No 46
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=63.54 E-value=69 Score=29.57 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeee
Q 047407 79 LDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYW 124 (294)
Q Consensus 79 ~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~ 124 (294)
.-++++++.+|+++ |-..+-.=-....+++=|+++|+||--.
T Consensus 142 ~F~ak~g~~~~~~e----~~d~~~~QF~~~~~~l~Dp~TGL~YH~w 183 (357)
T COG4225 142 LFLAKYGQVTGRPE----YFDEALYQFSLHEKYLRDPETGLYYHGW 183 (357)
T ss_pred HHHHHHHHHhCCHH----HHHHHHHHHHHHHHHccCCCcCceEEee
Confidence 46889999998765 3333333344556678899999999643
No 47
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=61.40 E-value=1.5e+02 Score=27.97 Aligned_cols=182 Identities=13% Similarity=0.149 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCC-CccceehhhhHHHhcc
Q 047407 79 LDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSN-QSNNAFTSNFVPIWID 157 (294)
Q Consensus 79 ~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~PL~~g 157 (294)
-.|...++.-|+. .|.+.|..+.++|.+..-.+..|... .-+... ..+...+.- .++...+-.++..|+.
T Consensus 123 ~ALl~A~~~W~~~----~Y~~~A~~ll~~I~~~ev~~~~g~g~-~LlPG~----~gF~~~~~~~~NPSY~~p~~~~~fa~ 193 (376)
T PRK11097 123 YSLLEAGRLWKEP----RYTALGTALLKRIAREEVVTVPGLGS-MLLPGP----VGFADDGSWRLNPSYLPPQLLRRFAR 193 (376)
T ss_pred HHHHHHHHhhCcH----HHHHHHHHHHHHHHHhcccccCCCce-eecccc----ccccCCCCCeECcccccHHHHHHHHH
Confidence 3455566777764 49999999999999977665544211 111100 000000000 1111112334445555
Q ss_pred CCCCch--HHHHHHHHHhhhcCcccccccccc--cCCCCCCCCCCCCCchH-------HHHHHHHHHhcCcHHHHHHHHH
Q 047407 158 LFNSNT--CIVEKVKKSFQSSGFLGAAGIATS--LTRSREQWDFPNGWAPL-------QHMIVEGLAKSGLQEAKSMAQD 226 (294)
Q Consensus 158 ~~~~~~--~~~~~~~~~l~~~~~~~~~Gi~ts--~~~~~~~W~gPnvW~~~-------~~l~~~gL~~yg~~~~~~~A~~ 226 (294)
..+... .+++...+.|.+. .+.|++.. .++.+..|.--.++++. .+ +.-|+...+.. .+..
T Consensus 194 ~~~~~~W~~l~~~~~~lL~~~---a~tGL~PDWv~~~~~~~~~p~~~~~~~~sYdAiRVp-LWagm~~~~dp----~~~~ 265 (376)
T PRK11097 194 FLPGGPWAALAATNARLLLET---APKGFSPDWVRYQKGKGFQPDPEKGDIGSYDAIRVY-LWAGMLADGDP----QKAR 265 (376)
T ss_pred hcCCchHHHHHHHHHHHHHHh---cccCCCCcceeEcCCCCcccCCCCCCCcchhHhHHh-hhccccCccCh----hHHH
Confidence 555332 3345555555432 24555431 11111112111122221 11 13333333333 4555
Q ss_pred HHHHHHHHHHHHHhhcCccceeeccccCCccCCCccccCCCCccccHHHHHHHHHHhCCC
Q 047407 227 IAMRWINTNYVAYKETGAMHEKYDVEKCGDIGGGGEYIPQTGFGWSNGVVLAFLEEFGWP 286 (294)
Q Consensus 227 la~~~~~~~~~~~~~~g~~~E~Y~~~~~~~~g~gGey~~~~~fgWT~~v~L~~~~~~~~~ 286 (294)
+..++.... ..+.+.|..+|+.|..+|...+. ...|| +++ +|=+|...|.+
T Consensus 266 ll~~~~~~~-~~~~~~~~~p~~vd~~tG~~~~~-----~~~Gf--~Aa-~lp~l~~~~~~ 316 (376)
T PRK11097 266 LLARFKPMA-ALTAKNGAPPEKVDVATGKAQGN-----GPVGF--SAA-LLPFLQALGEP 316 (376)
T ss_pred HHHHHHHHH-HHHhhcCCCCeeEECCCCcCCCC-----CCccH--HHH-HHHHHHhcCCc
Confidence 666666543 34566788999999998653332 24566 444 44555555554
No 48
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=58.47 E-value=15 Score=25.14 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=20.5
Q ss_pred CCCcchHHHHHHHHHHHcCCHHHHHHHHHH
Q 047407 3 CSQPPLLSAMVYDIYNRTGDLDLVKKALSA 32 (294)
Q Consensus 3 rsqPP~~~~~v~~~y~~t~D~~fL~~~~p~ 32 (294)
|...-++.-|++.+|+.|++.+ +++++-.
T Consensus 49 rvskavlvkmlrkly~~tk~e~-vkrmlhl 77 (79)
T PF09061_consen 49 RVSKAVLVKMLRKLYEATKNEE-VKRMLHL 77 (79)
T ss_dssp -EEHHHHHHHHHHHHHHH--HH-HHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhchHH-HHHHHHh
Confidence 4445688999999999999887 6666644
No 49
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=55.98 E-value=25 Score=19.45 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHH
Q 047407 203 PLQHMIVEGLAKSGLQEAKSMAQDIA 228 (294)
Q Consensus 203 ~~~~l~~~gL~~yg~~~~~~~A~~la 228 (294)
.+|.+|.+-|.+.|+.+ .|..+.
T Consensus 2 ~Ln~lI~~YL~~~Gy~~---tA~~f~ 24 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKE---TAKAFA 24 (27)
T ss_dssp HHHHHHHHHHHHCT-HH---HHHHHH
T ss_pred HHHHHHHHHHHHCCcHH---HHHHHH
Confidence 37899999999999985 566554
No 50
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=53.81 E-value=2e+02 Score=27.15 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=25.8
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeee
Q 047407 84 MAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYW 124 (294)
Q Consensus 84 la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~ 124 (294)
+|..+|... .|.+.++.=...+.++.=|++-|.|+-.+
T Consensus 66 ~A~~~g~~~---~~~~~v~hG~~y~~~~~R~~~gg~~~~~~ 103 (388)
T COG2942 66 VAGLLGWRG---PWLDAVAHGIAYLARVGRDPEGGWYFALD 103 (388)
T ss_pred HHHHhcCCc---cHHHHHHhHHHHHHhcCcCCCCCeEEEec
Confidence 345566432 28888888888888888777777665433
No 51
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=51.45 E-value=89 Score=32.14 Aligned_cols=36 Identities=28% Similarity=0.601 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHHhhCC
Q 047407 9 LSAMVYDIYNRTGDLDLVKKA-LSALLKEHQFWNSGI 44 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~fL~~~-~p~l~k~~~~w~~~r 44 (294)
.+.+|+.|++.|||.+||++. ++.|...-+||.+.-
T Consensus 439 IAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv 475 (772)
T COG1554 439 IAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRV 475 (772)
T ss_pred HHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHh
Confidence 467899999999999999865 677777778999763
No 52
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=50.59 E-value=1.6e+02 Score=26.23 Aligned_cols=87 Identities=23% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCC-CC---CcHHHHHHHHHHH
Q 047407 9 LSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKL-RP---ESSTIMELDIASM 84 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~p-rp---es~~~~~~~lA~l 84 (294)
.++++..+|+.|+|.++++.+...+++..+-+... .+|. ++.....+ .+ ....-....+.++
T Consensus 144 i~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~--------~~g~------~~~~~~~~~~~~wchG~aGi~~~l~~l 209 (321)
T cd04791 144 IALFLLRLYKATGDSRYLELAEEALDKELARAVVD--------DGGL------LQVDEGARLLPYLCSGSAGLGLLMLRL 209 (321)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccC--------CCCc------eEcCCCCccCcccCCCcHHHHHHHHHH
Confidence 45677788999999999988877777766532211 1111 11111001 11 0001134456677
Q ss_pred HHHhCCchhHHHHHHHHHHHHHHHHhhcc
Q 047407 85 AQIVGDNRTAESFLKAAQARKQAINSVFW 113 (294)
Q Consensus 85 a~~lG~~~~a~~~~~~A~~l~~ai~~~lW 113 (294)
++.+++ ++|.+.|++..+.+.+.+|
T Consensus 210 ~~~~~d----~~~~~~a~~~~~~~~~~~~ 234 (321)
T cd04791 210 EAITGD----KRWRDEADGIAHAALSSCY 234 (321)
T ss_pred HHhcCC----HHHHHHHHHHHHHHhhhhc
Confidence 887765 3578888888887776653
No 53
>PRK13270 treF trehalase; Provisional
Probab=47.51 E-value=25 Score=34.68 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=33.4
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 047407 182 AGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNY 236 (294)
Q Consensus 182 ~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~ 236 (294)
+-||..-|+.--|||. |++++||...|.. ++|+.|.++++..+.
T Consensus 162 ~iVPGGRFrE~YYWDS--------Ywi~~GLl~sg~~---~~a~~mi~Nf~~li~ 205 (549)
T PRK13270 162 YIVPGGRFSETYYWDS--------YFTMLGLAESGRE---DLLKCMADNFAWMIE 205 (549)
T ss_pred eEecCCCcccchhhhH--------HHHHHHhhhcCcH---HHHHHHHHHHHHHHH
Confidence 3344444444448884 8999999999998 599999999997654
No 54
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=46.96 E-value=46 Score=19.28 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 047407 79 LDIASMAQIVGDNRTAESFLKAAQARKQAI 108 (294)
Q Consensus 79 ~~lA~la~~lG~~~~a~~~~~~A~~l~~ai 108 (294)
..|+.++...|+.++|..+.+++-.+++.+
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 367888888899999999999988887665
No 55
>PRK13271 treA trehalase; Provisional
Probab=46.01 E-value=26 Score=34.74 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=33.5
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 047407 182 AGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNY 236 (294)
Q Consensus 182 ~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~ 236 (294)
+-||..-|+.--|||. |++++||...|.. ++|+.+.++++..+.
T Consensus 150 ~iVPGGRFrE~YYWDS--------Y~i~~GLl~s~~~---~~a~~mi~Nf~~~i~ 193 (569)
T PRK13271 150 YVVPGGRFREVYYWDS--------YFTMLGLAESGHW---DKVADMVANFAHEID 193 (569)
T ss_pred eEecCCCcchhhhhHH--------HHHHHhhHhcCCH---HHHHHHHHHHHHHHH
Confidence 3344444444448874 8999999999998 599999999997654
No 56
>PRK13272 treA trehalase; Provisional
Probab=45.71 E-value=27 Score=34.45 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=32.3
Q ss_pred cccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 047407 184 IATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNY 236 (294)
Q Consensus 184 i~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~ 236 (294)
||..-|+.--|||. |++++||...|.. ++|+.+.++++..+.
T Consensus 153 VPGGRFrE~YYWDS--------Y~i~~GLl~s~~~---~~a~~mi~Nf~~~i~ 194 (542)
T PRK13272 153 VPGGRFREVYYWDS--------YFTMLGLVKSGQT---TLSRQMLDNFAYLID 194 (542)
T ss_pred ecCCCccchhhhHH--------HHHHHhhhhcCcH---HHHHHHHHHHHHHHH
Confidence 44433444448874 8999999999998 599999999997654
No 57
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=45.71 E-value=43 Score=19.46 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 047407 79 LDIASMAQIVGDNRTAESFLKAAQARKQA 107 (294)
Q Consensus 79 ~~lA~la~~lG~~~~a~~~~~~A~~l~~a 107 (294)
..|+.++...|+.++|..+-++|-.+...
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46899999999999998888887666543
No 58
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.00 E-value=1.9e+02 Score=28.33 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEEeeecCCCcccchhhhccCCCCccceehhhhHHHhc
Q 047407 77 MELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWLDYWISNRTSSQECQRWKGSNQSNNAFTSNFVPIWI 156 (294)
Q Consensus 77 ~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~PL~~ 156 (294)
.+..|++++++.|++ +|...|......=-. .+ ..++ +....+..+...+||+.
T Consensus 183 ielAl~~Ly~~Tg~~----rYL~LA~~Fi~~rg~---~P---------~~~r-----------g~e~~~gHAvr~iyl~~ 235 (589)
T COG3533 183 IELALAELYRLTGDQ----RYLDLARRFIHQRGV---EP---------LAQR-----------GDELEGGHAVRQIYLYI 235 (589)
T ss_pred hhHHHHHHHHHhcCh----HHHHHHHHHHHHhcc---Ch---------hhcC-----------chhhhhhhHHHHHHHhh
Confidence 677899999999875 488888766432111 11 1111 11112334666899999
Q ss_pred cCCCC-----ch---HHHHHHHHHhhhcCcccccccccccCCCCCCCCCCCCC--------chHHHHHHHHHHhcCcHHH
Q 047407 157 DLFNS-----NT---CIVEKVKKSFQSSGFLGAAGIATSLTRSREQWDFPNGW--------APLQHMIVEGLAKSGLQEA 220 (294)
Q Consensus 157 g~~~~-----~~---~~~~~~~~~l~~~~~~~~~Gi~ts~~~~~~~W~gPnvW--------~~~~~l~~~gL~~yg~~~~ 220 (294)
|++.- |. +.++.+-+.+....+..-||+-++--.-+..-+-||-= .++..+.-+=|.--+..
T Consensus 236 G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn~~~yAEtCas~~l~~~a~Rml~~~~d~-- 313 (589)
T COG3533 236 GAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPNRTAYAETCASYNLLKLARRMLGWGPDS-- 313 (589)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcccchHHHHHHHHHHHHHHHHHhccCCCc--
Confidence 98752 21 22455555554444445677754311112233444421 22222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccceeecccc
Q 047407 221 KSMAQDIAMRWINTNYVAYKETGAMHEKYDVEK 253 (294)
Q Consensus 221 ~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~ 253 (294)
+.|.-+-+...+.+..+..-+|.||=++||..
T Consensus 314 -~yaDvmErALYN~iL~g~slDg~~ffY~nPle 345 (589)
T COG3533 314 -QYADVMERALYNHILAGQSLDGGMFFYFNPLE 345 (589)
T ss_pred -hHHHHHHHHHHhccccccCCCCCeeEEecchh
Confidence 35555555566666666666799999999975
No 59
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.42 E-value=37 Score=32.50 Aligned_cols=44 Identities=36% Similarity=0.591 Sum_probs=32.3
Q ss_pred cCccceeeccccC--CccCCCccc---------cCCCCccccHHH--HHHHHHHhCC
Q 047407 242 TGAMHEKYDVEKC--GDIGGGGEY---------IPQTGFGWSNGV--VLAFLEEFGW 285 (294)
Q Consensus 242 ~g~~~E~Y~~~~~--~~~g~gGey---------~~~~~fgWT~~v--~L~~~~~~~~ 285 (294)
||.+||-+....+ +..++||.| .+.++.|++-|+ ++.++...|.
T Consensus 272 tg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavGFaiGveRl~~~l~~~~~ 328 (429)
T COG0124 272 TGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVGFAIGVERLILALEEEGK 328 (429)
T ss_pred cceEEEEEEcCCccccceecCccchHHHHHhCCCCCCceeEehHHHHHHHHHHHcCC
Confidence 7999999988654 345567776 346788999997 5566777775
No 60
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=40.96 E-value=3.6e+02 Score=28.76 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCcHH-HHHHHHHHHHH--HHHHHHHHHhhc--CccceeeccccCCccCCCcccc--C
Q 047407 193 EQWDFPNGWAPLQHMIVEGLAKSGLQE-AKSMAQDIAMR--WINTNYVAYKET--GAMHEKYDVEKCGDIGGGGEYI--P 265 (294)
Q Consensus 193 ~~W~gPnvW~~~~~l~~~gL~~yg~~~-~~~~A~~la~~--~~~~~~~~~~~~--g~~~E~Y~~~~~~~~g~gGey~--~ 265 (294)
.|-.|| -|...-=..+++-...+..- ....++.|++- -+...++...++ -.+.|-=|.. |||- .
T Consensus 1428 NYHQGP-EWlw~~GyfLrArl~f~~k~gp~~~~y~i~qv~~rL~~h~k~l~~S~WrgLpELTN~n--------geyC~dS 1498 (1521)
T KOG3625|consen 1428 NYHQGP-EWLWPIGYFLRARLYFSRKMGPETTAYTIVQVKNRLSRHYKHLERSPWRGLPELTNEN--------GEYCPDS 1498 (1521)
T ss_pred cccCCC-ceeehhHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHhhccccCchhhccCC--------cCccccc
Confidence 488999 66655445555554443210 00234444333 333444443333 2477765554 5553 2
Q ss_pred CCCccccHHHHHHHHHHh
Q 047407 266 QTGFGWSNGVVLAFLEEF 283 (294)
Q Consensus 266 ~~~fgWT~~v~L~~~~~~ 283 (294)
..-..||.|.+|+.+...
T Consensus 1499 c~tQAWSvacile~~ydL 1516 (1521)
T KOG3625|consen 1499 CETQAWSVACILETLYDL 1516 (1521)
T ss_pred chHhHHHHHHHHHHHHHH
Confidence 445689999999987653
No 61
>PLN02567 alpha,alpha-trehalase
Probab=40.74 E-value=35 Score=33.78 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 047407 204 LQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMH 246 (294)
Q Consensus 204 ~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~ 246 (294)
..|+++.||...|.. ++|+.+.++++..+. +.|.++
T Consensus 157 DSy~i~~GLl~s~~~---~~A~~mi~Nf~~~i~----~~GfIP 192 (554)
T PLN02567 157 DSYWVIRGLLASKMY---ETAKGVVENLLYLVD----TYGFVP 192 (554)
T ss_pred HHHHHHHHHHhCCCH---HHHHHHHHHHHHHHH----HcCcCC
Confidence 458999999999998 499999999997765 468776
No 62
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=38.94 E-value=77 Score=32.10 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=42.6
Q ss_pred CCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccc
Q 047407 193 EQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVE 252 (294)
Q Consensus 193 ~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~ 252 (294)
+.|++-.+||=..++++.+|.+.|+.+ .|++.. +|+..+. ..+|.+.-+|.+.
T Consensus 288 ~n~dYryvW~RD~a~~a~AL~~~G~~~---~a~~~~-~~l~~~~---~~~G~~lq~y~vd 340 (648)
T TIGR01535 288 NTGGYHLVWPRDLYQVANAFLAAGDVD---SALRSL-DYLAKVQ---QDNGMFPQNSWVD 340 (648)
T ss_pred CCCceEEEehhhHHHHHHHHHHCCCHH---HHHHHH-HHHHHHh---ccCCCcCceeccC
Confidence 369998899999999999999999985 676655 5665444 3588888889887
No 63
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=34.30 E-value=1.3e+02 Score=30.22 Aligned_cols=54 Identities=15% Similarity=0.364 Sum_probs=40.5
Q ss_pred CCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccc
Q 047407 192 REQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVE 252 (294)
Q Consensus 192 ~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~ 252 (294)
.+.|++..+||=...+++.||...|..+ .|++.. .|+..+ -..+|.+.-+|.+.
T Consensus 287 ~~~~~Y~y~W~RD~~~~a~Al~~~G~~~---~a~~~l-~~l~~~---q~~~G~~~~~~~~d 340 (616)
T TIGR01577 287 VRCGGYAYCWGRDASYIATALDRAGYHD---RVDRFF-RWAMQT---QSRDGSWQQRYYLN 340 (616)
T ss_pred ccCCCCceeccccHHHHHHHHHHCCCHH---HHHHHH-HHHHHh---hCcCCCcceEEecC
Confidence 3357888899999999999999999984 677665 344332 24688888888754
No 64
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=33.55 E-value=33 Score=33.62 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 047407 205 QHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAM 245 (294)
Q Consensus 205 ~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~ 245 (294)
.|++++||...|.. ++|+.+.++++..+. +-|.+
T Consensus 134 SYfi~~GLl~s~~~---~~a~~mi~Nf~~~i~----~yGfi 167 (512)
T PF01204_consen 134 SYFIILGLLASGMY---ETAKGMIENFLYLID----RYGFI 167 (512)
T ss_dssp HHHHHHHHHHTT-H---HHHHHHHHHHHHHHH----HHSS-
T ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHHHHH----HhCcC
Confidence 48999999999998 599999999997764 34766
No 65
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=33.08 E-value=37 Score=25.35 Aligned_cols=39 Identities=13% Similarity=0.392 Sum_probs=29.9
Q ss_pred CCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Q 047407 200 GWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAY 239 (294)
Q Consensus 200 vW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~ 239 (294)
-|+.++.|+++|.+|.|... ++++..|..+.--+..+.|
T Consensus 43 EwaDv~~Ll~D~~~RaGis~-~~i~~A~~~K~~iN~aR~W 81 (100)
T PF04447_consen 43 EWADVQILLWDGARRAGISP-EQIIDAMEAKLAINKARQW 81 (100)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhccccCC
Confidence 89999999999999999863 3677777666665544444
No 66
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]
Probab=32.38 E-value=96 Score=29.91 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeecCCCCC--CCCcHHH-----HHHH
Q 047407 9 LSAMVYDIYNRTGDLDLVK-KALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYGMWNKL--RPESSTI-----MELD 80 (294)
Q Consensus 9 ~~~~v~~~y~~t~D~~fL~-~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~~~~~p--rpes~~~-----~~~~ 80 (294)
.+++...||..+.|.+|++ ..+|..+.-.+||.+.-. -.+..++.|.++....+-.-| ....|.- ..+-
T Consensus 373 v~~Af~~y~h~~~D~e~~~~t~Wpi~~~VA~F~~SRv~---~~~s~~~yHL~nVM~PDE~H~~VNn~VYTNa~~k~~L~F 449 (682)
T KOG4125|consen 373 VAMAFSIYLHEGIDDEYLRYTTWPIIKNVAQFFTSRVK---YNSSLGLYHLYNVMDPDEFHNHVNNGVYTNAGIKTLLKF 449 (682)
T ss_pred HHHHHHHHHHhccchhhhccCCchhHHHHHHHhhheeE---ecCccceeeeeccCCchhcccccccchhhhHHHHHHHHH
Confidence 4567777777788999987 688988888889987532 112334444433311111111 1123322 2344
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHH
Q 047407 81 IASMAQIVGDNRTAESFLKAAQAR 104 (294)
Q Consensus 81 lA~la~~lG~~~~a~~~~~~A~~l 104 (294)
.+.+|+.+|.. .-.+|++-++.+
T Consensus 450 A~~LA~hlG~~-~~~kW~eVsD~i 472 (682)
T KOG4125|consen 450 ATDLANHLGEV-VDPKWSEVSDDI 472 (682)
T ss_pred HHHHHHhhCCc-cChhHHHhccCc
Confidence 56778888854 446688777655
No 67
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=29.32 E-value=1.1e+02 Score=16.88 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHH
Q 047407 80 DIASMAQIVGDNRTAESFLKAAQARK 105 (294)
Q Consensus 80 ~lA~la~~lG~~~~a~~~~~~A~~l~ 105 (294)
.++.+...+|+.+.|..+-+++-++.
T Consensus 6 ~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 6 NLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 57889999999999988888877664
No 68
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=27.56 E-value=82 Score=24.54 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 047407 4 SQPPLLSAMVYDIYNRTGDLDLVKKALSALLKEHQ 38 (294)
Q Consensus 4 sqPP~~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~ 38 (294)
+|||+..+++...+...|+..+.-++...+.....
T Consensus 1 ~~pPl~~~~~~~~~~l~G~~~~~~~~~~~l~~~~~ 35 (159)
T PF13231_consen 1 DHPPLYFLLLALFFKLFGDSVWALRLFNILFSLLT 35 (159)
T ss_pred CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 59999999999999999987776667666655544
No 69
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=26.09 E-value=96 Score=21.01 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 047407 78 ELDIASMAQIVGDNRTAESFLKAAQARKQ 106 (294)
Q Consensus 78 ~~~lA~la~~lG~~~~a~~~~~~A~~l~~ 106 (294)
...|+.+...+|+.++|..+-++|-++.+
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 34688899999999999999999888765
No 70
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=25.77 E-value=42 Score=23.67 Aligned_cols=18 Identities=22% Similarity=0.601 Sum_probs=14.9
Q ss_pred hhccccCCCeEEeeecCC
Q 047407 110 SVFWNKEKGQWLDYWISN 127 (294)
Q Consensus 110 ~~lWdee~g~y~D~~~~~ 127 (294)
+.|+|+|+|.|.+..+-.
T Consensus 31 k~lfDPETGqYVeV~iP~ 48 (75)
T PF15232_consen 31 KTLFDPETGQYVEVLIPS 48 (75)
T ss_pred eeeecCCCCcEEEEeCCC
Confidence 568999999999888764
No 71
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=24.85 E-value=6e+02 Score=24.03 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=63.0
Q ss_pred CCCcch-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhCCCccccccCCCCeeeceeeec----CCCCCC-----CC
Q 047407 3 CSQPPL-LSAMVYDIYNRTGDLDLVKKALSALLKEHQFWNSGIHKVNIQEDHGRNHTLSRYYG----MWNKLR-----PE 72 (294)
Q Consensus 3 rsqPP~-~~~~v~~~y~~t~D~~fL~~~~p~l~k~~~~w~~~r~~~~~~~~~G~~~~l~~y~~----~~~~pr-----pe 72 (294)
+|+|=+ +.-++..-|+.|+++.++.++-........=+... ++| .+..+.+ +....| |.
T Consensus 172 ~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~--------~~g---~v~E~fd~dW~p~~~frg~~~ePG 240 (388)
T COG2942 172 GSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADA--------ESG---LVREHFDHDWNPAHGFRGRGIEPG 240 (388)
T ss_pred CCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhc--------ccC---cHhhhccccCCcCCCcccCCCCCc
Confidence 455543 33444556789999877777666655555433322 233 2333332 222223 32
Q ss_pred cHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccccCCCeEE
Q 047407 73 SSTIMELDIASMAQIVGDNRTAESFLKAAQARKQAINSVFWNKEKGQWL 121 (294)
Q Consensus 73 s~~~~~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~~lWdee~g~y~ 121 (294)
.--|-...|-.+++..|+ ..-...|.++-+...+.=||+++|..+
T Consensus 241 H~fEW~~Lll~~a~~~~~----~~l~~~A~~lf~~a~~~g~d~~~gg~~ 285 (388)
T COG2942 241 HQFEWAWLLLDIARRRGR----AWLIEAARRLFDIAVADGWDPERGGAY 285 (388)
T ss_pred hHHHHHHHHHHHHHHhch----hHHHHHHHHHHHHHHHhccCcccCeEE
Confidence 333445667788888876 345667888888888999999998665
No 72
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=24.43 E-value=2.2e+02 Score=28.74 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=49.9
Q ss_pred CCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccceeeccccC-------CccCCCccccCCCC
Q 047407 196 DFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMHEKYDVEKC-------GDIGGGGEYIPQTG 268 (294)
Q Consensus 196 ~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~E~Y~~~~~-------~~~g~gGey~~~~~ 268 (294)
|+-.+||-...+++.||...|+.+ .|.++. .++..+. ..+|.+..+|.+... +-.|...-+++ .
T Consensus 281 dY~y~W~RD~~~~~~AL~~~G~~~---~a~~~f-~~l~~~~---~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv--~ 351 (612)
T COG3387 281 DYRYVWPRDASYAALALLAIGYKK---EALRFF-EFLPDVQ---TPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPV--R 351 (612)
T ss_pred CceEEccCcHHHHHHHHHHcCCHH---HHHHHH-HHHHHhh---CCCCceeeEEecCCCccccccccccCCCCCCce--E
Confidence 455699999999999999999984 788776 3443333 456778888887642 00111122333 4
Q ss_pred ccccHHHHHHHHH
Q 047407 269 FGWSNGVVLAFLE 281 (294)
Q Consensus 269 fgWT~~v~L~~~~ 281 (294)
-|+|+.+...|..
T Consensus 352 ~~~~a~~~~~ld~ 364 (612)
T COG3387 352 IGNTALVQGALDV 364 (612)
T ss_pred EcchhhHHHHHHH
Confidence 5787777655443
No 73
>PF06301 Lambda_Kil: Bacteriophage lambda Kil protein; InterPro: IPR010444 This family consists of several Bacteriophage lambda Kil protein like sequences. A cessation of division, followed by one or two fairly synchronous cell divisions in Escherichia coli is due to two genetically separable events: a temporary block of cell division and, at the same time, a block to the initiation of new rounds of DNA replication. The cell division block is a result of the transient expression of the lambda kil gene []. The lambda kil gene has been shown to be responsible for premature lysis on the addition of chloramphenicol between 15 and 20 min after thermal induction of a lambda prophage []. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of functions from the lambda p(L) operon. The kil gene causes cell death and filamentation [].
Probab=24.23 E-value=1.9e+02 Score=18.06 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 047407 78 ELDIASMAQIVGDNRTAESFLKAAQARKQAINS 110 (294)
Q Consensus 78 ~~~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~ 110 (294)
.+.=+-||+.+||. .-|.+.-+.+|.+|+-
T Consensus 8 aQsK~~IA~flGD~---~mw~eA~e~~k~ai~~ 37 (43)
T PF06301_consen 8 AQSKAAIARFLGDE---KMWSEANEAMKIAIGM 37 (43)
T ss_pred HHHHHHHHHHHccH---HHHHHHHHHHHHHhCc
Confidence 34456789999965 5699999999998863
No 74
>PRK15444 pduC propanediol dehydratase large subunit; Provisional
Probab=23.34 E-value=87 Score=29.88 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccc-eeecccc
Q 047407 207 MIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMH-EKYDVEK 253 (294)
Q Consensus 207 l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~-E~Y~~~~ 253 (294)
=++++|.+.|+. ++|..|..-.-..+...|.+|..++ |.|++.+
T Consensus 472 DiVkaL~~~Gf~---dvAe~il~m~kqrv~GDyLqTSAi~d~~~~v~S 516 (554)
T PRK15444 472 DVVKALAKGGFT---DVAENILNMLKQRVTGDYLQTSAIIDEDFNVLS 516 (554)
T ss_pred HHHHHHHHcCCh---HHHHHHHHHHHHHhhcchhhhhhhhcCCCcEEe
Confidence 478899999998 4888877655566667788888777 8998875
No 75
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=21.87 E-value=97 Score=30.89 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=33.8
Q ss_pred ccccccccCCCCCCCCCCCCCchHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Q 047407 181 AAGIATSLTRSREQWDFPNGWAPLQHMIVEGLAKSGLQEAKSMAQDIAMRWINTNY 236 (294)
Q Consensus 181 ~~Gi~ts~~~~~~~W~gPnvW~~~~~l~~~gL~~yg~~~~~~~A~~la~~~~~~~~ 236 (294)
|++||-.-++.=.|||-+ ++++||...+-. +.|+-+.++++..|.
T Consensus 175 PfiVPGgRF~E~YyWDsy--------wii~GLl~S~m~---~takGmieNf~~lV~ 219 (600)
T KOG0602|consen 175 PFIVPGGRFRELYYWDSY--------WIIKGLLASQMF---DTAKGMIENFISLVD 219 (600)
T ss_pred ceeccCCceeeeecccHH--------HHHHhHHhhccc---HHHHHHHHHHHHHHH
Confidence 344554444444589865 999999999887 589999999997765
No 76
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=21.07 E-value=2.6e+02 Score=18.79 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Q 047407 80 DIASMAQIVGDNRTAESFLKAAQARKQAINS 110 (294)
Q Consensus 80 ~lA~la~~lG~~~~a~~~~~~A~~l~~ai~~ 110 (294)
.+|.-|+.-|+.+.|..|.+.++.+-.+|..
T Consensus 13 ~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~ 43 (59)
T smart00685 13 QAALQAKRAGDEEKARRHLRIAKQFDDAIKA 43 (59)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhHHHHHHH
Confidence 4566688889999999999999999998887
No 77
>PF02286 Dehydratase_LU: Dehydratase large subunit; InterPro: IPR003206 This entry represents the large subunit of adenosylcobalamin-dependent diol dehydratases (4.2.1.28 from EC) and glycerol dehydratases (4.2.1.30 from EC). These enzymes are produced by some enterobacteria in response to growth substances. The enzyme have an TIM beta/alpha barrel fold []. Inactivated holoenzymes are reactivated by their own reactivating factors that mediate the ATP-dependent exchange of an enzyme-bound, damaged cofactor for free adenosylcobalamin through intermediary formation of apoenzyme. The reactivation takes place in two steps: (a) ADP-dependent cobalamin release and (b) ATP-dependent dissociation of the resulting apoenzyme-reactivating factor complexes [].; GO: 0016836 hydro-lyase activity, 0031419 cobalamin binding, 0050215 propanediol dehydratase activity, 0006071 glycerol metabolic process, 0008152 metabolic process; PDB: 1MMF_A 1IWP_A 1UC4_A 1IWB_L 1EGM_L 1EGV_A 3AUJ_L 1DIO_L 1UC5_A 1EEX_L ....
Probab=20.70 E-value=82 Score=30.04 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=32.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhcCccc-eeecccc
Q 047407 207 MIVEGLAKSGLQEAKSMAQDIAMRWINTNYVAYKETGAMH-EKYDVEK 253 (294)
Q Consensus 207 l~~~gL~~yg~~~~~~~A~~la~~~~~~~~~~~~~~g~~~-E~Y~~~~ 253 (294)
=++++|.+.|+. ++|..|..-.-..+...|.+|..++ |.|++.+
T Consensus 472 DivkaL~~~Gf~---dvAe~il~m~kqrvsGDyLqTSAi~d~~~~v~S 516 (554)
T PF02286_consen 472 DIVKALAKRGFR---DVAENILNMLKQRVSGDYLQTSAIFDEDFNVIS 516 (554)
T ss_dssp HHHHHHHCTT-H---HHHHHHHHHHCHHHH-GGGSTT-EEETTTEEE-
T ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHHhccchhhhhhhhcCCCcEEe
Confidence 478899999998 5888887666667777888998888 8898865
No 78
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=20.42 E-value=58 Score=30.67 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=25.0
Q ss_pred cCccceeeccccCCccCCCccccC--------CCCccccHHH
Q 047407 242 TGAMHEKYDVEKCGDIGGGGEYIP--------QTGFGWSNGV 275 (294)
Q Consensus 242 ~g~~~E~Y~~~~~~~~g~gGey~~--------~~~fgWT~~v 275 (294)
||.+||-|.+..+...++||.|.. .++.||+-++
T Consensus 279 TG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAvGfai~l 320 (392)
T PRK12421 279 TGLVFAAYIPGRGQALARGGRYDGIGEAFGRARPATGFSMDL 320 (392)
T ss_pred CCCEEEEEECCCCCcccCCCCccchhHhhCCCCCCceEEeeH
Confidence 799999999876666778888841 3566776554
Done!