BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047408
         (830 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
          Length = 1134

 Score = 32.0 bits (71), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 40/156 (25%)

Query: 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLF 224
           ++N +M  +++ G FKE +Y+   ++  G+  D  +++  L+C+      R+ +DA    
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG-----RQDQDA---- 217

Query: 225 DELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALM 284
                                G  E+ LE   +M   G  +       +LS       L 
Sbjct: 218 ---------------------GTIERCLE---QMSQEGLKLQALFTAVLLSEEDRATVL- 252

Query: 285 FGRAVH----AFALKACFSKEISFNNTLLDMYSKCG 316
             +AVH     F+L       ++ +  L D+Y+K G
Sbjct: 253 --KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286


>pdb|2O8P|A Chain A, Crystal Structure Of A Putative 14-3-3 Protein From
           Cryptosporidium Parvum, Cgd7_2470
          Length = 227

 Score = 31.6 bits (70), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 79  LEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVH----SIICESGIVIDDGVL 134
           +++ +E  + S+  K+  K+  S  +L   L SLED KK+H    +++CE    I+   L
Sbjct: 108 VDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPL 167

Query: 135 GSKLVFMFVTCGDLKEGRRVFNKIDN-GKVF 164
           G      ++      E ++VFN +++ GK+ 
Sbjct: 168 GFIQNLAYILSEKYGEKKQVFNXLNSLGKIL 198


>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
           System
 pdb|1WOP|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
           System
 pdb|1WOR|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
           System
 pdb|1WOS|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
           System
          Length = 364

 Score = 30.4 bits (67), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 105 LCADLKSLEDGKKVHSIIC-ESGIVIDDGVL 134
           +  D  SL DGK ++S++C E+G +IDD V+
Sbjct: 69  ITNDFSSLPDGKAIYSVMCNENGGIIDDLVV 99


>pdb|1TI2|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1TI2|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1TI2|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1TI2|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1TI2|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1TI2|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1TI4|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1TI4|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1TI4|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1TI4|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1TI4|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1TI4|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1TI6|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1TI6|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1TI6|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1TI6|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1TI6|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1TI6|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1VLD|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1VLD|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1VLD|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1VLD|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1VLD|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1VLD|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici
 pdb|1VLE|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1VLE|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1VLE|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1VLE|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1VLE|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1VLE|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Pyrogallol
 pdb|1VLF|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1VLF|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1VLF|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1VLF|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1VLF|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
 pdb|1VLF|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
           Transhydroxylase From Pelobacter Acidigallici Complexed
           With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
          Length = 274

 Score = 30.0 bits (66), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 783 VTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFK 820
           VT  + V GDC E AK + K+  +E+   ++N F  FK
Sbjct: 199 VTAGILVQGDCFEGAKVVLKSGGKEVASAETNFFGEFK 236


>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
           Protein From Thermoplasma Acidophilum
 pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
           Protein From Thermoplasma Acidophilum
          Length = 290

 Score = 29.3 bits (64), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 277 CANCGALMFGRAVHAFALKACFSKEISFNNTL 308
           C+N GA     A HAFAL    +K I  NN L
Sbjct: 75  CSNAGAYSISVAEHAFALLLAHAKNILENNEL 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,337,824
Number of Sequences: 62578
Number of extensions: 994197
Number of successful extensions: 2309
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2299
Number of HSP's gapped (non-prelim): 15
length of query: 830
length of database: 14,973,337
effective HSP length: 107
effective length of query: 723
effective length of database: 8,277,491
effective search space: 5984625993
effective search space used: 5984625993
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)