Query 047408
Match_columns 830
No_of_seqs 981 out of 5215
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-157 1E-161 1412.9 87.4 768 58-828 46-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-133 4E-138 1180.1 66.7 602 229-830 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.4E-82 3E-87 766.4 61.6 613 132-752 51-735 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.3E-68 9.4E-73 626.9 55.4 531 80-628 354-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.5E-67 7.5E-72 619.3 57.0 576 161-773 368-991 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 5.9E-67 1.3E-71 615.9 53.5 461 61-621 85-554 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 5.2E-40 1.1E-44 285.5 6.9 106 697-820 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.7E-32 1.7E-36 331.5 65.2 616 60-688 224-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-31 3.9E-36 328.3 65.3 629 46-690 172-866 (899)
10 PRK11447 cellulose synthase su 99.9 2.8E-22 6.1E-27 248.3 60.5 596 60-693 59-744 (1157)
11 PRK11447 cellulose synthase su 99.9 1.7E-22 3.6E-27 250.3 55.1 592 69-691 34-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.4E-20 3.1E-25 222.4 60.1 598 60-689 75-705 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.5E-17 3.2E-22 197.1 55.9 547 108-689 56-671 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 6.6E-18 1.4E-22 176.9 34.9 433 235-679 51-508 (966)
15 PRK11788 tetratricopeptide rep 99.8 9.1E-18 2E-22 185.4 28.0 291 343-697 45-354 (389)
16 KOG4626 O-linked N-acetylgluco 99.8 8.2E-17 1.8E-21 168.8 31.4 371 232-637 116-500 (966)
17 PRK11788 tetratricopeptide rep 99.8 1.3E-17 2.8E-22 184.2 25.0 304 241-575 44-363 (389)
18 TIGR00990 3a0801s09 mitochondr 99.8 8.1E-16 1.7E-20 179.3 39.6 417 235-689 130-570 (615)
19 PRK10049 pgaA outer membrane p 99.8 7E-15 1.5E-19 174.6 42.6 369 304-689 51-455 (765)
20 TIGR00990 3a0801s09 mitochondr 99.7 3.7E-14 8.1E-19 165.3 42.9 442 165-688 129-595 (615)
21 PRK15174 Vi polysaccharide exp 99.7 5.1E-15 1.1E-19 172.0 33.5 324 308-661 48-386 (656)
22 PRK15174 Vi polysaccharide exp 99.7 5E-15 1.1E-19 172.0 31.9 351 268-660 43-407 (656)
23 PRK14574 hmsH outer membrane p 99.7 1.7E-13 3.6E-18 159.6 43.1 432 242-689 44-512 (822)
24 KOG2002 TPR-containing nuclear 99.7 1E-12 2.2E-17 146.1 43.6 170 507-693 626-801 (1018)
25 PRK10049 pgaA outer membrane p 99.7 5E-14 1.1E-18 167.3 35.2 363 271-663 53-463 (765)
26 KOG2002 TPR-containing nuclear 99.7 5.8E-13 1.3E-17 148.0 40.2 580 77-688 108-743 (1018)
27 PRK14574 hmsH outer membrane p 99.7 2.9E-12 6.3E-17 149.3 45.0 434 172-663 43-520 (822)
28 KOG0495 HAT repeat protein [RN 99.6 5.1E-10 1.1E-14 119.3 53.2 550 109-707 328-895 (913)
29 KOG4422 Uncharacterized conser 99.6 3.4E-12 7.3E-17 129.2 34.7 361 223-621 198-587 (625)
30 KOG2076 RNA polymerase III tra 99.6 5.4E-11 1.2E-15 131.8 45.8 600 74-685 150-890 (895)
31 KOG4422 Uncharacterized conser 99.6 1.1E-11 2.5E-16 125.5 37.2 432 62-554 115-591 (625)
32 KOG2003 TPR repeat-containing 99.5 3.9E-12 8.4E-17 129.2 27.0 203 468-676 500-709 (840)
33 KOG4318 Bicoid mRNA stability 99.5 3.2E-11 7E-16 132.6 33.5 511 85-620 12-621 (1088)
34 PF13429 TPR_15: Tetratricopep 99.4 1.8E-13 3.9E-18 143.3 9.2 256 408-688 13-275 (280)
35 KOG0495 HAT repeat protein [RN 99.4 4E-08 8.6E-13 105.3 47.8 490 105-668 385-892 (913)
36 KOG1155 Anaphase-promoting com 99.4 5.9E-10 1.3E-14 114.7 29.1 345 310-686 172-532 (559)
37 KOG1126 DNA-binding cell divis 99.4 2.7E-11 5.9E-16 130.3 20.4 247 459-739 354-609 (638)
38 KOG2076 RNA polymerase III tra 99.4 2.8E-10 6.1E-15 126.3 28.4 330 312-700 150-522 (895)
39 KOG0547 Translocase of outer m 99.4 3.6E-10 7.8E-15 116.9 26.3 211 472-688 340-564 (606)
40 KOG1126 DNA-binding cell divis 99.3 6.1E-11 1.3E-15 127.6 20.5 277 384-689 335-619 (638)
41 KOG1173 Anaphase-promoting com 99.3 9.7E-09 2.1E-13 108.6 32.7 264 398-688 239-516 (611)
42 TIGR00540 hemY_coli hemY prote 99.3 1.5E-09 3.2E-14 119.8 28.3 143 509-653 245-396 (409)
43 KOG4318 Bicoid mRNA stability 99.3 9.1E-09 2E-13 113.8 32.5 530 117-700 11-603 (1088)
44 PRK10747 putative protoheme IX 99.3 6.1E-10 1.3E-14 122.2 24.0 285 315-657 97-391 (398)
45 PRK10747 putative protoheme IX 99.3 4.4E-09 9.6E-14 115.4 29.2 279 346-688 97-388 (398)
46 KOG1915 Cell cycle control pro 99.2 2.7E-07 5.9E-12 95.5 38.5 488 145-689 86-624 (677)
47 PF13041 PPR_2: PPR repeat fam 99.2 2E-11 4.3E-16 90.0 6.4 50 522-571 1-50 (50)
48 KOG2047 mRNA splicing factor [ 99.2 6.8E-07 1.5E-11 96.0 42.0 397 233-688 249-685 (835)
49 KOG1155 Anaphase-promoting com 99.2 3.9E-09 8.5E-14 108.7 24.4 246 467-736 236-522 (559)
50 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5.1E-16 89.6 6.2 50 230-279 1-50 (50)
51 PF13429 TPR_15: Tetratricopep 99.2 3.4E-11 7.3E-16 126.1 9.8 253 340-655 15-276 (280)
52 TIGR02521 type_IV_pilW type IV 99.2 2.1E-09 4.6E-14 108.9 22.7 197 492-689 30-231 (234)
53 KOG1915 Cell cycle control pro 99.2 8.4E-07 1.8E-11 92.0 39.8 413 76-553 86-536 (677)
54 TIGR00540 hemY_coli hemY prote 99.2 1.5E-08 3.2E-13 111.9 29.3 291 66-360 85-397 (409)
55 KOG1840 Kinesin light chain [C 99.2 6.9E-09 1.5E-13 113.3 24.6 196 467-688 250-477 (508)
56 KOG2003 TPR repeat-containing 99.1 2.9E-08 6.4E-13 101.5 24.9 181 505-689 502-688 (840)
57 COG3071 HemY Uncharacterized e 99.1 7.8E-08 1.7E-12 98.1 27.7 289 69-367 88-395 (400)
58 PRK12370 invasion protein regu 99.1 2.5E-08 5.5E-13 114.4 25.1 213 470-690 316-535 (553)
59 KOG0985 Vesicle coat protein c 99.1 1.1E-05 2.3E-10 90.8 43.7 144 524-688 1104-1247(1666)
60 KOG1173 Anaphase-promoting com 99.0 5.5E-07 1.2E-11 95.7 31.3 267 342-636 253-531 (611)
61 PRK12370 invasion protein regu 99.0 3.6E-08 7.8E-13 113.1 23.2 210 472-689 275-501 (553)
62 KOG1174 Anaphase-promoting com 99.0 1.4E-06 3.1E-11 88.9 31.1 347 306-661 101-505 (564)
63 KOG4162 Predicted calmodulin-b 99.0 1.4E-06 3E-11 95.9 33.4 375 296-689 317-782 (799)
64 KOG2047 mRNA splicing factor [ 99.0 2.2E-05 4.7E-10 84.8 40.4 328 63-435 102-509 (835)
65 KOG1840 Kinesin light chain [C 99.0 2.8E-07 6E-12 101.0 27.2 246 303-654 200-477 (508)
66 TIGR02521 type_IV_pilW type IV 99.0 7.8E-08 1.7E-12 97.3 21.9 198 402-658 30-234 (234)
67 COG3071 HemY Uncharacterized e 99.0 6E-07 1.3E-11 91.8 27.2 283 315-652 97-386 (400)
68 COG2956 Predicted N-acetylgluc 99.0 3E-07 6.4E-12 91.1 23.7 293 346-697 48-354 (389)
69 KOG0547 Translocase of outer m 99.0 1.2E-06 2.7E-11 91.3 29.3 404 67-518 119-562 (606)
70 KOG3616 Selective LIM binding 98.9 4.4E-05 9.5E-10 83.1 41.4 259 342-688 741-1022(1636)
71 PRK11189 lipoprotein NlpI; Pro 98.9 5.8E-08 1.3E-12 102.0 19.7 211 472-691 40-266 (296)
72 KOG3616 Selective LIM binding 98.9 2.5E-06 5.4E-11 92.5 30.2 128 216-360 546-675 (1636)
73 COG3063 PilF Tfp pilus assembl 98.9 1E-07 2.2E-12 90.3 17.2 162 526-692 37-204 (250)
74 COG2956 Predicted N-acetylgluc 98.9 3.4E-06 7.3E-11 83.8 27.1 220 459-682 70-303 (389)
75 KOG2376 Signal recognition par 98.8 8.6E-05 1.9E-09 79.8 38.5 180 496-683 312-513 (652)
76 PRK11189 lipoprotein NlpI; Pro 98.8 9.2E-07 2E-11 92.9 23.7 209 460-676 66-286 (296)
77 KOG1129 TPR repeat-containing 98.8 1.9E-07 4E-12 92.3 15.3 224 406-690 226-458 (478)
78 KOG3785 Uncharacterized conser 98.7 4E-05 8.7E-10 76.9 30.7 218 384-659 270-493 (557)
79 KOG1127 TPR repeat-containing 98.7 6.6E-05 1.4E-09 85.1 32.4 557 114-687 474-1101(1238)
80 KOG1125 TPR repeat-containing 98.6 6.6E-07 1.4E-11 95.5 15.0 217 469-689 296-526 (579)
81 KOG3785 Uncharacterized conser 98.6 5.6E-05 1.2E-09 75.9 27.4 449 70-598 29-497 (557)
82 KOG1174 Anaphase-promoting com 98.6 4.9E-05 1.1E-09 78.0 27.4 253 471-735 209-519 (564)
83 KOG0985 Vesicle coat protein c 98.6 0.0027 5.8E-08 72.4 49.0 491 167-691 485-1163(1666)
84 KOG1156 N-terminal acetyltrans 98.6 0.00021 4.5E-09 77.8 33.4 217 176-433 20-249 (700)
85 KOG4162 Predicted calmodulin-b 98.6 0.00013 2.7E-09 81.0 31.2 436 188-661 313-788 (799)
86 KOG0548 Molecular co-chaperone 98.6 2.4E-05 5.3E-10 83.2 24.7 211 465-689 231-454 (539)
87 KOG1127 TPR repeat-containing 98.6 0.0002 4.4E-09 81.3 32.9 344 79-433 474-880 (1238)
88 PF12569 NARP1: NMDA receptor- 98.5 0.00023 4.9E-09 79.4 32.7 415 208-685 14-515 (517)
89 KOG2376 Signal recognition par 98.5 0.00043 9.4E-09 74.6 32.9 435 69-572 18-505 (652)
90 PRK04841 transcriptional regul 98.5 0.0011 2.3E-08 82.1 41.9 436 218-690 265-760 (903)
91 KOG0624 dsRNA-activated protei 98.5 0.00014 3.1E-09 72.9 26.6 92 467-561 164-258 (504)
92 PF12569 NARP1: NMDA receptor- 98.5 5.8E-05 1.3E-09 84.1 27.0 172 476-655 129-333 (517)
93 KOG1156 N-terminal acetyltrans 98.5 0.00095 2.1E-08 72.8 34.6 458 98-651 10-506 (700)
94 KOG1129 TPR repeat-containing 98.5 1E-05 2.2E-10 80.3 17.9 156 337-517 227-382 (478)
95 PF04733 Coatomer_E: Coatomer 98.5 6.9E-06 1.5E-10 85.1 17.4 163 492-661 101-270 (290)
96 KOG3617 WD40 and TPR repeat-co 98.5 0.00011 2.5E-09 81.2 26.9 435 132-645 726-1189(1416)
97 PRK15359 type III secretion sy 98.4 3.3E-06 7.2E-11 78.0 13.1 122 545-673 14-138 (144)
98 TIGR03302 OM_YfiO outer membra 98.4 1.5E-05 3.3E-10 81.0 19.0 178 493-690 33-232 (235)
99 PF12854 PPR_1: PPR repeat 98.4 3E-07 6.5E-12 60.8 4.1 34 397-430 1-34 (34)
100 cd05804 StaR_like StaR_like; a 98.4 0.00029 6.4E-09 76.6 30.1 58 632-689 269-335 (355)
101 COG3063 PilF Tfp pilus assembl 98.4 4.4E-05 9.5E-10 72.8 19.7 190 497-688 39-234 (250)
102 PF12854 PPR_1: PPR repeat 98.4 3.9E-07 8.4E-12 60.2 4.1 33 488-520 2-34 (34)
103 KOG3617 WD40 and TPR repeat-co 98.4 0.0054 1.2E-07 68.5 37.3 72 278-360 923-994 (1416)
104 PRK04841 transcriptional regul 98.3 0.0095 2.1E-07 73.7 44.0 262 379-660 463-764 (903)
105 PRK15359 type III secretion sy 98.3 1.6E-05 3.4E-10 73.6 14.2 98 590-689 21-120 (144)
106 KOG1070 rRNA processing protei 98.3 3.9E-05 8.6E-10 89.6 20.1 200 490-693 1455-1666(1710)
107 PRK10370 formate-dependent nit 98.3 3.5E-05 7.5E-10 75.4 16.5 115 572-689 52-172 (198)
108 PLN02789 farnesyltranstransfer 98.3 9E-05 2E-09 77.9 20.1 199 470-674 49-268 (320)
109 PRK15363 pathogenicity island 98.2 1.8E-05 3.9E-10 72.0 12.3 118 595-735 35-154 (157)
110 cd05804 StaR_like StaR_like; a 98.2 0.00037 8.1E-09 75.8 25.2 266 403-690 6-293 (355)
111 KOG1128 Uncharacterized conser 98.2 5.3E-05 1.1E-09 83.4 17.5 189 488-691 393-583 (777)
112 PF04733 Coatomer_E: Coatomer 98.2 2.2E-05 4.7E-10 81.4 14.0 213 464-689 41-264 (290)
113 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6E-11 57.0 4.5 35 525-559 1-35 (35)
114 KOG4340 Uncharacterized conser 98.2 0.00056 1.2E-08 67.4 21.8 321 65-429 12-372 (459)
115 PRK10370 formate-dependent nit 98.1 0.00013 2.8E-09 71.4 17.3 153 500-665 23-182 (198)
116 TIGR03302 OM_YfiO outer membra 98.1 9.2E-05 2E-09 75.2 17.1 181 457-658 32-234 (235)
117 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9.2E-11 56.1 4.4 35 233-267 1-35 (35)
118 KOG1128 Uncharacterized conser 98.1 3.9E-05 8.5E-10 84.4 14.1 223 398-692 393-618 (777)
119 PRK15179 Vi polysaccharide bio 98.1 0.00013 2.9E-09 84.4 19.3 137 523-664 85-225 (694)
120 COG5010 TadD Flp pilus assembl 98.1 0.00017 3.6E-09 70.5 16.7 134 555-690 62-197 (257)
121 TIGR02552 LcrH_SycD type III s 98.1 5.5E-05 1.2E-09 69.3 13.2 100 590-689 11-113 (135)
122 KOG1125 TPR repeat-containing 98.1 0.00022 4.9E-09 76.7 18.2 222 312-586 295-525 (579)
123 COG4783 Putative Zn-dependent 98.0 0.0017 3.7E-08 68.9 22.9 174 508-688 252-435 (484)
124 KOG1070 rRNA processing protei 98.0 0.00066 1.4E-08 79.9 21.1 235 447-685 1447-1695(1710)
125 KOG0548 Molecular co-chaperone 97.9 0.0029 6.3E-08 67.8 23.6 357 310-688 10-419 (539)
126 COG4783 Putative Zn-dependent 97.9 0.00088 1.9E-08 71.1 19.5 145 525-691 307-455 (484)
127 KOG1914 mRNA cleavage and poly 97.9 0.05 1.1E-06 58.7 34.6 160 459-619 367-534 (656)
128 COG5010 TadD Flp pilus assembl 97.9 0.00056 1.2E-08 66.9 16.7 150 530-683 72-224 (257)
129 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 52.8 4.4 34 524-557 1-34 (34)
130 KOG0624 dsRNA-activated protei 97.9 0.0052 1.1E-07 62.0 23.4 250 498-791 43-315 (504)
131 PRK15179 Vi polysaccharide bio 97.9 0.00056 1.2E-08 79.3 19.3 143 488-635 81-230 (694)
132 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00038 8.3E-09 74.6 16.5 122 562-688 172-295 (395)
133 PLN02789 farnesyltranstransfer 97.9 0.00073 1.6E-08 71.1 18.2 180 502-686 46-246 (320)
134 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.7E-10 52.2 4.4 34 232-265 1-34 (34)
135 KOG4340 Uncharacterized conser 97.8 0.0011 2.4E-08 65.4 17.0 286 336-685 13-334 (459)
136 PLN03088 SGT1, suppressor of 97.8 0.00021 4.5E-09 77.0 13.0 86 603-688 10-97 (356)
137 KOG2053 Mitochondrial inherita 97.8 0.13 2.8E-06 59.0 36.9 68 629-696 438-508 (932)
138 PF01535 PPR: PPR repeat; Int 97.8 3.3E-05 7.1E-10 50.0 3.6 31 525-555 1-31 (31)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00072 1.6E-08 72.6 15.0 126 495-625 171-298 (395)
140 PF01535 PPR: PPR repeat; Int 97.7 4.5E-05 9.8E-10 49.4 3.6 31 233-263 1-31 (31)
141 TIGR02552 LcrH_SycD type III s 97.7 0.00058 1.2E-08 62.5 12.0 113 546-663 5-121 (135)
142 cd00189 TPR Tetratricopeptide 97.7 0.00047 1E-08 57.8 10.7 92 598-689 3-96 (100)
143 PRK14720 transcript cleavage f 97.7 0.0019 4.1E-08 75.7 18.3 196 456-672 29-268 (906)
144 PF09976 TPR_21: Tetratricopep 97.6 0.0014 3E-08 60.8 13.5 114 572-686 24-143 (145)
145 PF12895 Apc3: Anaphase-promot 97.6 7.1E-05 1.5E-09 62.0 4.2 78 608-686 2-83 (84)
146 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00078 1.7E-08 59.9 11.3 92 598-689 5-104 (119)
147 KOG0553 TPR repeat-containing 97.5 0.00051 1.1E-08 68.5 9.9 95 566-663 88-185 (304)
148 PF13414 TPR_11: TPR repeat; P 97.5 0.0002 4.2E-09 56.7 5.8 64 626-689 2-66 (69)
149 PF14559 TPR_19: Tetratricopep 97.5 0.00022 4.9E-09 56.2 5.5 51 638-688 2-52 (68)
150 KOG3060 Uncharacterized conser 97.5 0.0048 1E-07 60.0 15.3 179 506-688 25-218 (289)
151 PRK10153 DNA-binding transcrip 97.5 0.0032 7E-08 70.8 16.7 138 520-688 333-480 (517)
152 KOG1914 mRNA cleavage and poly 97.4 0.26 5.7E-06 53.3 34.4 210 475-687 310-536 (656)
153 KOG2053 Mitochondrial inherita 97.4 0.4 8.8E-06 55.1 41.6 223 73-299 19-258 (932)
154 KOG0553 TPR repeat-containing 97.4 0.0012 2.6E-08 65.9 10.1 97 532-633 89-188 (304)
155 PF13432 TPR_16: Tetratricopep 97.4 0.00048 1E-08 53.7 6.0 57 633-689 3-59 (65)
156 KOG3081 Vesicle coat complex C 97.4 0.018 3.8E-07 56.6 17.6 175 480-661 95-276 (299)
157 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0022 4.8E-08 56.9 11.1 101 564-664 7-113 (119)
158 CHL00033 ycf3 photosystem I as 97.3 0.0014 3.1E-08 62.5 10.2 93 595-687 35-139 (168)
159 PF09976 TPR_21: Tetratricopep 97.3 0.0085 1.8E-07 55.5 15.0 122 529-654 17-145 (145)
160 KOG0550 Molecular chaperone (D 97.3 0.017 3.7E-07 60.0 17.8 88 602-689 256-349 (486)
161 PRK02603 photosystem I assembl 97.3 0.0044 9.5E-08 59.4 13.2 130 523-676 34-166 (172)
162 PF13431 TPR_17: Tetratricopep 97.3 0.00013 2.8E-09 48.1 1.7 32 650-681 2-33 (34)
163 KOG3060 Uncharacterized conser 97.3 0.019 4.2E-07 55.9 16.8 170 489-661 47-225 (289)
164 PRK15331 chaperone protein Sic 97.3 0.0042 9.1E-08 57.0 11.8 89 601-689 43-133 (165)
165 PRK02603 photosystem I assembl 97.3 0.0022 4.7E-08 61.4 10.6 81 596-676 36-121 (172)
166 PLN03088 SGT1, suppressor of 97.2 0.0029 6.3E-08 68.2 12.3 103 569-674 12-117 (356)
167 PRK14720 transcript cleavage f 97.2 0.022 4.8E-07 67.0 19.9 170 229-434 28-200 (906)
168 PF08579 RPM2: Mitochondrial r 97.2 0.0022 4.8E-08 54.2 8.1 88 165-278 27-115 (120)
169 COG3898 Uncharacterized membra 97.1 0.4 8.6E-06 49.9 25.1 240 415-686 132-388 (531)
170 PF13432 TPR_16: Tetratricopep 97.1 0.0017 3.6E-08 50.6 6.3 61 601-661 3-65 (65)
171 PF13371 TPR_9: Tetratricopept 97.0 0.0019 4E-08 51.7 6.4 55 635-689 3-57 (73)
172 PF07079 DUF1347: Protein of u 97.0 0.64 1.4E-05 49.5 28.6 187 495-687 300-521 (549)
173 COG4235 Cytochrome c biogenesi 97.0 0.015 3.3E-07 58.6 13.8 102 592-693 152-259 (287)
174 CHL00033 ycf3 photosystem I as 97.0 0.017 3.7E-07 55.0 13.9 109 524-660 35-153 (168)
175 cd00189 TPR Tetratricopeptide 97.0 0.0069 1.5E-07 50.4 10.1 57 527-585 3-60 (100)
176 KOG3081 Vesicle coat complex C 97.0 0.088 1.9E-06 51.9 18.2 116 567-689 116-235 (299)
177 PRK10153 DNA-binding transcrip 96.9 0.022 4.7E-07 64.2 15.6 49 643-691 400-450 (517)
178 COG3898 Uncharacterized membra 96.9 0.23 5E-06 51.6 20.9 178 506-689 97-291 (531)
179 PF14559 TPR_19: Tetratricopep 96.9 0.0015 3.3E-08 51.4 4.4 63 607-669 3-67 (68)
180 COG4700 Uncharacterized protei 96.8 0.019 4.2E-07 53.1 11.8 99 590-688 84-187 (251)
181 PF05843 Suf: Suppressor of fo 96.7 0.031 6.7E-07 58.1 13.8 135 525-662 2-142 (280)
182 PF12895 Apc3: Anaphase-promot 96.7 0.0039 8.4E-08 51.5 5.7 80 537-620 2-83 (84)
183 PF04840 Vps16_C: Vps16, C-ter 96.6 1.3 2.7E-05 46.8 26.8 122 497-638 181-302 (319)
184 PRK10803 tol-pal system protei 96.6 0.021 4.5E-07 58.3 11.5 93 597-689 145-245 (263)
185 PF14938 SNAP: Soluble NSF att 96.5 0.24 5.2E-06 51.6 19.3 89 573-661 129-230 (282)
186 PF12688 TPR_5: Tetratrico pep 96.5 0.023 5.1E-07 50.0 9.8 85 601-685 7-99 (120)
187 COG4700 Uncharacterized protei 96.5 0.2 4.3E-06 46.7 15.8 128 555-687 85-219 (251)
188 PF13414 TPR_11: TPR repeat; P 96.5 0.0047 1E-07 48.7 4.7 64 595-658 3-69 (69)
189 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.01 2.2E-07 63.5 8.4 63 627-689 75-140 (453)
190 PF12688 TPR_5: Tetratrico pep 96.4 0.047 1E-06 48.1 11.3 91 530-620 7-100 (120)
191 PF06239 ECSIT: Evolutionarily 96.4 0.039 8.5E-07 53.0 11.4 126 152-295 34-167 (228)
192 PRK15363 pathogenicity island 96.4 0.048 1E-06 50.0 11.5 90 526-620 37-128 (157)
193 PF06239 ECSIT: Evolutionarily 96.4 0.021 4.5E-07 54.8 9.5 90 521-611 44-154 (228)
194 KOG0543 FKBP-type peptidyl-pro 96.4 0.041 8.8E-07 57.7 12.0 108 603-736 216-340 (397)
195 PF10037 MRP-S27: Mitochondria 96.3 0.043 9.4E-07 59.4 12.6 82 335-416 105-186 (429)
196 COG0457 NrfG FOG: TPR repeat [ 96.3 1.2 2.6E-05 43.8 23.6 213 473-689 38-264 (291)
197 KOG0550 Molecular chaperone (D 96.3 0.35 7.5E-06 50.8 18.2 263 342-621 58-347 (486)
198 PF07079 DUF1347: Protein of u 96.3 2 4.4E-05 45.8 33.3 126 503-633 389-531 (549)
199 PF10037 MRP-S27: Mitochondria 96.3 0.035 7.6E-07 60.1 11.4 118 455-572 63-186 (429)
200 PF13428 TPR_14: Tetratricopep 96.2 0.007 1.5E-07 42.7 4.0 42 628-669 2-43 (44)
201 KOG1538 Uncharacterized conser 96.2 0.35 7.6E-06 53.3 18.2 56 266-330 746-801 (1081)
202 PF08579 RPM2: Mitochondrial r 96.2 0.065 1.4E-06 45.6 10.1 81 526-607 27-116 (120)
203 PF13371 TPR_9: Tetratricopept 96.2 0.014 2.9E-07 46.6 6.1 64 603-666 3-68 (73)
204 PF05843 Suf: Suppressor of fo 96.1 0.056 1.2E-06 56.1 11.9 129 560-690 2-136 (280)
205 PF04840 Vps16_C: Vps16, C-ter 96.1 1.7 3.7E-05 45.8 22.7 108 306-429 181-288 (319)
206 PRK10866 outer membrane biogen 96.0 0.32 6.9E-06 49.3 16.1 54 635-688 183-239 (243)
207 PF13281 DUF4071: Domain of un 95.8 1.3 2.7E-05 47.3 19.8 160 498-660 146-338 (374)
208 KOG2066 Vacuolar assembly/sort 95.7 2.1 4.6E-05 48.8 22.2 125 305-434 395-536 (846)
209 PF03704 BTAD: Bacterial trans 95.7 0.16 3.4E-06 47.0 11.6 114 569-696 16-136 (146)
210 PF14938 SNAP: Soluble NSF att 95.6 3.5 7.5E-05 43.0 25.9 94 528-621 159-263 (282)
211 KOG4555 TPR repeat-containing 95.6 0.091 2E-06 45.7 8.6 90 603-692 51-146 (175)
212 PRK10803 tol-pal system protei 95.4 0.16 3.4E-06 51.9 11.6 61 601-661 186-251 (263)
213 PRK11906 transcriptional regul 95.4 0.7 1.5E-05 50.0 16.7 173 507-684 232-430 (458)
214 KOG2796 Uncharacterized conser 95.4 0.73 1.6E-05 45.4 15.0 186 478-669 125-328 (366)
215 KOG2041 WD40 repeat protein [G 95.4 1.6 3.6E-05 48.7 19.3 19 416-434 747-765 (1189)
216 KOG2796 Uncharacterized conser 95.4 0.97 2.1E-05 44.6 15.7 144 371-566 180-326 (366)
217 PF12921 ATP13: Mitochondrial 95.3 0.1 2.2E-06 46.5 8.6 52 590-641 47-102 (126)
218 KOG1130 Predicted G-alpha GTPa 95.3 0.19 4.1E-06 52.4 11.4 127 562-688 198-342 (639)
219 KOG2041 WD40 repeat protein [G 95.2 6.9 0.00015 44.1 25.9 256 308-618 766-1044(1189)
220 PF13424 TPR_12: Tetratricopep 95.2 0.026 5.7E-07 45.6 4.2 61 628-688 6-73 (78)
221 KOG1538 Uncharacterized conser 95.2 1.3 2.7E-05 49.2 17.5 200 269-521 600-801 (1081)
222 COG5107 RNA14 Pre-mRNA 3'-end 95.0 6 0.00013 42.3 25.5 82 92-175 37-121 (660)
223 PF13424 TPR_12: Tetratricopep 95.0 0.031 6.7E-07 45.2 4.0 60 597-656 7-75 (78)
224 PRK11906 transcriptional regul 94.8 0.36 7.8E-06 52.1 12.2 126 563-688 257-399 (458)
225 PRK10866 outer membrane biogen 94.7 2.6 5.6E-05 42.7 18.0 57 306-362 148-204 (243)
226 KOG2280 Vacuolar assembly/sort 94.7 10 0.00022 43.4 32.2 333 260-618 425-793 (829)
227 PF13525 YfiO: Outer membrane 94.5 2.4 5.3E-05 41.6 16.9 163 528-738 9-192 (203)
228 COG4105 ComL DNA uptake lipopr 94.5 1.9 4.2E-05 42.8 15.5 138 527-690 37-196 (254)
229 PF04053 Coatomer_WDAD: Coatom 94.3 0.39 8.5E-06 53.0 11.6 131 534-691 271-403 (443)
230 PF12921 ATP13: Mitochondrial 94.3 0.13 2.9E-06 45.8 6.5 96 493-604 2-97 (126)
231 KOG2280 Vacuolar assembly/sort 94.1 14 0.0003 42.4 27.0 328 66-428 440-795 (829)
232 PF09205 DUF1955: Domain of un 94.1 3.1 6.8E-05 36.7 14.0 139 536-693 14-152 (161)
233 COG0457 NrfG FOG: TPR repeat [ 94.1 6.4 0.00014 38.5 21.2 195 460-659 61-268 (291)
234 KOG3941 Intermediate in Toll s 94.1 0.33 7E-06 48.2 9.1 100 512-612 53-175 (406)
235 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 1.8 3.9E-05 46.9 15.1 62 491-552 73-140 (453)
236 PF04097 Nic96: Nup93/Nic96; 93.9 3.2 7E-05 48.3 18.6 243 341-625 266-535 (613)
237 PF13512 TPR_18: Tetratricopep 93.8 0.75 1.6E-05 41.5 10.3 58 605-662 20-82 (142)
238 KOG3941 Intermediate in Toll s 93.8 0.62 1.3E-05 46.4 10.5 116 148-282 50-173 (406)
239 PF13525 YfiO: Outer membrane 93.7 4.7 0.0001 39.6 17.0 166 498-682 10-199 (203)
240 smart00299 CLH Clathrin heavy 93.6 2.8 6E-05 38.3 14.3 68 558-638 68-136 (140)
241 PF00515 TPR_1: Tetratricopept 93.5 0.11 2.5E-06 33.9 3.6 33 628-660 2-34 (34)
242 COG4235 Cytochrome c biogenesi 93.4 0.74 1.6E-05 46.7 10.7 65 60-124 153-221 (287)
243 PF04184 ST7: ST7 protein; In 93.4 1.3 2.7E-05 48.2 12.9 217 537-771 181-410 (539)
244 PF07719 TPR_2: Tetratricopept 93.3 0.17 3.6E-06 33.0 4.2 33 628-660 2-34 (34)
245 KOG1130 Predicted G-alpha GTPa 93.2 1.6 3.5E-05 45.8 12.8 131 456-586 193-342 (639)
246 KOG1258 mRNA processing protei 93.0 18 0.00039 40.5 28.0 182 492-676 296-490 (577)
247 KOG0543 FKBP-type peptidyl-pro 93.0 2.7 5.9E-05 44.5 14.4 94 596-689 258-354 (397)
248 smart00299 CLH Clathrin heavy 92.7 4.8 0.0001 36.7 14.5 87 165-258 9-95 (140)
249 KOG4234 TPR repeat-containing 92.6 0.73 1.6E-05 43.5 8.6 88 602-689 102-196 (271)
250 PF10300 DUF3808: Protein of u 92.3 4.2 9E-05 45.7 16.1 159 528-689 192-375 (468)
251 COG1729 Uncharacterized protei 92.3 0.77 1.7E-05 46.0 9.0 89 598-689 145-243 (262)
252 PF03704 BTAD: Bacterial trans 92.3 0.96 2.1E-05 41.7 9.4 65 530-596 68-137 (146)
253 COG3118 Thioredoxin domain-con 91.4 4.6 9.9E-05 41.1 13.2 114 568-688 143-263 (304)
254 PF04184 ST7: ST7 protein; In 91.1 5.6 0.00012 43.4 14.3 101 563-663 263-382 (539)
255 KOG1941 Acetylcholine receptor 91.1 2 4.4E-05 44.4 10.5 193 493-685 43-270 (518)
256 PF13281 DUF4071: Domain of un 91.0 22 0.00048 38.1 18.6 37 402-438 304-340 (374)
257 PF09613 HrpB1_HrpK: Bacterial 90.7 1.5 3.2E-05 40.5 8.3 54 638-691 21-74 (160)
258 PF13512 TPR_18: Tetratricopep 90.6 5.5 0.00012 36.0 11.8 19 643-661 115-133 (142)
259 PRK09687 putative lyase; Provi 90.6 23 0.00051 36.6 22.3 236 301-570 36-278 (280)
260 COG1729 Uncharacterized protei 89.9 2.8 6.1E-05 42.1 10.2 92 527-621 145-241 (262)
261 PF10300 DUF3808: Protein of u 89.7 2.4 5.3E-05 47.5 10.9 140 546-689 179-333 (468)
262 KOG1920 IkappaB kinase complex 89.5 15 0.00032 44.4 17.1 23 407-429 794-818 (1265)
263 TIGR02561 HrpB1_HrpK type III 89.5 2 4.2E-05 39.0 7.9 54 639-692 22-75 (153)
264 COG3118 Thioredoxin domain-con 89.3 20 0.00044 36.6 15.6 154 532-688 142-300 (304)
265 PF02259 FAT: FAT domain; Int 88.9 25 0.00054 37.7 18.2 150 522-673 144-304 (352)
266 PF09613 HrpB1_HrpK: Bacterial 88.8 9.1 0.0002 35.4 11.9 93 564-659 15-109 (160)
267 KOG4555 TPR repeat-containing 88.6 2.3 5E-05 37.3 7.4 89 568-659 52-147 (175)
268 KOG1920 IkappaB kinase complex 88.4 70 0.0015 39.1 24.1 198 171-435 859-1058(1265)
269 PF08631 SPO22: Meiosis protei 88.3 34 0.00075 35.4 20.6 59 203-261 89-150 (278)
270 PF13176 TPR_7: Tetratricopept 88.1 0.66 1.4E-05 30.9 3.2 26 663-688 1-26 (36)
271 PF13181 TPR_8: Tetratricopept 88.1 0.67 1.5E-05 30.1 3.2 31 629-659 3-33 (34)
272 PF13170 DUF4003: Protein of u 88.1 9.8 0.00021 39.7 13.3 129 473-604 77-226 (297)
273 KOG2610 Uncharacterized conser 87.7 7.4 0.00016 40.0 11.4 159 536-697 115-283 (491)
274 COG5107 RNA14 Pre-mRNA 3'-end 87.5 46 0.001 36.0 30.8 80 299-380 39-121 (660)
275 KOG4279 Serine/threonine prote 87.4 16 0.00034 41.8 14.6 154 459-661 244-400 (1226)
276 KOG4648 Uncharacterized conser 87.3 2 4.3E-05 44.1 7.2 91 567-660 105-198 (536)
277 KOG1585 Protein required for f 87.3 33 0.00071 34.0 15.1 194 466-684 39-250 (308)
278 PF04053 Coatomer_WDAD: Coatom 87.3 5.6 0.00012 44.1 11.5 105 308-429 324-428 (443)
279 PF00637 Clathrin: Region in C 87.2 0.21 4.6E-06 45.9 0.4 127 274-418 14-140 (143)
280 PF13428 TPR_14: Tetratricopep 86.9 1.7 3.7E-05 30.4 4.9 34 526-561 3-36 (44)
281 KOG2114 Vacuolar assembly/sort 86.8 19 0.00041 41.9 15.2 173 499-687 340-516 (933)
282 PRK15331 chaperone protein Sic 86.6 3.2 7E-05 38.5 7.7 83 535-621 48-131 (165)
283 COG4785 NlpI Lipoprotein NlpI, 86.6 25 0.00054 34.1 13.6 158 525-689 100-265 (297)
284 PF06552 TOM20_plant: Plant sp 86.4 7.6 0.00016 36.5 10.0 46 643-688 51-100 (186)
285 PF08631 SPO22: Meiosis protei 85.9 46 0.001 34.4 21.3 18 636-653 255-272 (278)
286 COG3629 DnrI DNA-binding trans 85.5 4.5 9.7E-05 41.3 8.8 75 493-567 153-235 (280)
287 COG4455 ImpE Protein of avirul 85.0 10 0.00022 36.7 10.3 55 634-688 8-62 (273)
288 PF13176 TPR_7: Tetratricopept 84.7 1.3 2.8E-05 29.4 3.2 28 629-656 1-28 (36)
289 PF00515 TPR_1: Tetratricopept 84.0 2 4.3E-05 27.8 3.9 32 525-558 2-33 (34)
290 KOG1498 26S proteasome regulat 83.8 45 0.00097 35.4 15.1 109 600-712 136-263 (439)
291 KOG3364 Membrane protein invol 83.5 13 0.00027 33.2 9.4 86 629-740 34-124 (149)
292 KOG0276 Vesicle coat complex C 83.4 15 0.00032 41.0 12.0 147 505-685 598-745 (794)
293 PF04097 Nic96: Nup93/Nic96; 82.9 58 0.0013 38.1 17.8 159 525-688 325-532 (613)
294 PF09205 DUF1955: Domain of un 82.7 35 0.00076 30.4 12.2 58 528-586 90-147 (161)
295 PF14853 Fis1_TPR_C: Fis1 C-te 82.2 4.2 9.1E-05 29.8 5.2 31 633-663 7-37 (53)
296 PF14853 Fis1_TPR_C: Fis1 C-te 82.0 7.6 0.00016 28.5 6.5 50 664-739 4-53 (53)
297 COG3629 DnrI DNA-binding trans 81.3 6 0.00013 40.5 7.8 56 633-688 159-214 (280)
298 PF07035 Mic1: Colon cancer-as 80.7 36 0.00078 32.0 12.1 132 252-395 14-147 (167)
299 PF00637 Clathrin: Region in C 80.5 1.2 2.6E-05 40.9 2.4 87 460-549 9-95 (143)
300 PRK12798 chemotaxis protein; R 80.2 93 0.002 33.7 21.4 177 506-685 125-319 (421)
301 COG3947 Response regulator con 80.1 74 0.0016 32.5 14.5 57 632-688 284-340 (361)
302 TIGR02508 type_III_yscG type I 80.1 22 0.00047 29.9 9.0 88 473-564 20-107 (115)
303 PF02259 FAT: FAT domain; Int 80.0 39 0.00084 36.2 14.5 67 626-692 145-215 (352)
304 KOG4570 Uncharacterized conser 79.6 9.5 0.00021 39.0 8.3 102 296-398 58-165 (418)
305 PRK10941 hypothetical protein; 78.9 9.8 0.00021 38.9 8.6 60 629-688 183-242 (269)
306 PF07721 TPR_4: Tetratricopept 78.8 2.9 6.4E-05 25.3 3.0 24 662-685 2-25 (26)
307 COG2976 Uncharacterized protei 78.0 67 0.0015 30.8 13.2 114 542-660 70-192 (207)
308 COG4649 Uncharacterized protei 77.9 46 0.00099 31.2 11.4 120 313-432 69-196 (221)
309 PF07719 TPR_2: Tetratricopept 77.6 4.2 9.1E-05 26.1 3.7 31 526-558 3-33 (34)
310 PF11207 DUF2989: Protein of u 76.6 11 0.00024 36.3 7.5 76 605-681 117-198 (203)
311 COG4105 ComL DNA uptake lipopr 76.6 88 0.0019 31.5 19.4 174 494-689 36-232 (254)
312 PF13374 TPR_10: Tetratricopep 76.3 3.3 7.2E-05 28.1 3.1 28 662-689 3-30 (42)
313 KOG2610 Uncharacterized conser 76.2 1E+02 0.0023 32.1 15.1 152 505-661 115-283 (491)
314 KOG4570 Uncharacterized conser 76.0 18 0.00038 37.1 9.0 97 487-587 58-163 (418)
315 PF10602 RPN7: 26S proteasome 75.7 13 0.00029 35.4 8.1 57 304-360 38-100 (177)
316 PRK09687 putative lyase; Provi 75.6 1E+02 0.0023 31.8 24.7 203 162-378 67-277 (280)
317 KOG0292 Vesicle coat complex C 75.6 7.3 0.00016 45.2 7.0 115 537-683 606-720 (1202)
318 KOG0376 Serine-threonine phosp 75.5 6.8 0.00015 42.5 6.5 86 603-688 12-99 (476)
319 PF07035 Mic1: Colon cancer-as 75.3 73 0.0016 29.9 14.9 101 255-362 48-149 (167)
320 PF10602 RPN7: 26S proteasome 74.7 48 0.001 31.6 11.5 59 494-552 37-101 (177)
321 PF13170 DUF4003: Protein of u 74.7 99 0.0021 32.3 14.7 56 540-595 78-139 (297)
322 smart00028 TPR Tetratricopepti 74.0 6.4 0.00014 24.0 4.0 31 629-659 3-33 (34)
323 TIGR02561 HrpB1_HrpK type III 73.5 52 0.0011 30.1 10.5 65 570-637 21-87 (153)
324 PF02284 COX5A: Cytochrome c o 72.9 27 0.00058 29.5 7.8 60 542-603 28-87 (108)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 72.8 22 0.00048 29.6 7.3 62 540-603 23-84 (103)
326 KOG1308 Hsp70-interacting prot 72.4 2.3 4.9E-05 43.9 2.0 90 608-697 127-218 (377)
327 PF13374 TPR_10: Tetratricopep 72.0 7.2 0.00016 26.4 4.0 28 525-552 3-30 (42)
328 PF13431 TPR_17: Tetratricopep 71.3 6.7 0.00014 25.6 3.4 24 490-513 10-33 (34)
329 KOG1586 Protein required for f 71.1 1.1E+02 0.0025 30.2 13.4 66 596-661 114-188 (288)
330 KOG4648 Uncharacterized conser 70.8 13 0.00028 38.4 6.8 86 532-628 105-199 (536)
331 KOG2066 Vacuolar assembly/sort 70.8 2.2E+02 0.0047 33.4 22.7 75 460-544 636-710 (846)
332 KOG1941 Acetylcholine receptor 70.3 1.4E+02 0.003 31.6 13.9 198 459-656 44-275 (518)
333 PRK15180 Vi polysaccharide bio 70.2 18 0.00038 39.2 7.9 111 545-660 311-424 (831)
334 PF13181 TPR_8: Tetratricopept 69.6 8.1 0.00018 24.8 3.6 28 662-689 2-29 (34)
335 PF13174 TPR_6: Tetratricopept 69.3 6.6 0.00014 24.9 3.1 27 663-689 2-28 (33)
336 KOG0276 Vesicle coat complex C 68.1 1.2E+02 0.0026 34.4 13.6 103 501-621 645-747 (794)
337 PF04910 Tcf25: Transcriptiona 67.2 1.9E+02 0.0041 31.3 17.3 91 566-659 110-225 (360)
338 PF06552 TOM20_plant: Plant sp 66.9 46 0.001 31.5 9.0 31 541-573 52-83 (186)
339 PRK15180 Vi polysaccharide bio 65.9 55 0.0012 35.6 10.4 137 572-713 302-441 (831)
340 PF13174 TPR_6: Tetratricopept 65.2 9.3 0.0002 24.1 3.2 29 632-660 5-33 (33)
341 PF09477 Type_III_YscG: Bacter 65.0 71 0.0015 27.3 8.8 87 473-563 21-107 (116)
342 cd00923 Cyt_c_Oxidase_Va Cytoc 65.0 29 0.00062 29.0 6.4 53 613-665 28-80 (103)
343 PF13934 ELYS: Nuclear pore co 64.3 1E+02 0.0023 30.7 11.9 105 528-641 80-186 (226)
344 KOG2114 Vacuolar assembly/sort 64.1 3.1E+02 0.0066 32.6 27.3 53 66-121 337-393 (933)
345 PF02284 COX5A: Cytochrome c o 63.9 29 0.00063 29.3 6.3 53 614-666 32-84 (108)
346 PF14427 Pput2613-deam: Pput_2 63.6 16 0.00035 30.8 4.8 59 756-814 44-102 (118)
347 PF10345 Cohesin_load: Cohesin 63.5 3E+02 0.0065 32.3 31.6 37 323-359 289-327 (608)
348 PF15161 Neuropep_like: Neurop 63.4 2.3 5E-05 30.6 -0.0 16 785-801 11-26 (65)
349 KOG0686 COP9 signalosome, subu 63.3 2.1E+02 0.0045 30.9 13.8 160 494-688 151-331 (466)
350 COG4649 Uncharacterized protei 62.5 1.4E+02 0.003 28.2 15.8 121 534-655 68-195 (221)
351 PF07721 TPR_4: Tetratricopept 61.2 15 0.00033 22.1 3.3 24 405-428 3-26 (26)
352 PF09986 DUF2225: Uncharacteri 60.6 44 0.00095 33.0 8.3 63 628-690 119-194 (214)
353 PF11768 DUF3312: Protein of u 60.3 90 0.002 35.0 11.2 56 498-553 413-473 (545)
354 KOG1586 Protein required for f 60.1 1.9E+02 0.0041 28.8 16.9 69 603-671 162-241 (288)
355 KOG1585 Protein required for f 59.1 2E+02 0.0043 28.8 12.0 50 636-685 159-214 (308)
356 KOG1258 mRNA processing protei 58.9 3.2E+02 0.0069 31.1 24.5 127 64-192 46-180 (577)
357 PF10366 Vps39_1: Vacuolar sor 58.8 1.1E+02 0.0024 26.3 9.5 40 216-260 28-67 (108)
358 PF04910 Tcf25: Transcriptiona 58.6 1.9E+02 0.0041 31.2 13.4 64 626-689 99-167 (360)
359 COG2909 MalT ATP-dependent tra 57.8 4E+02 0.0087 31.9 18.8 163 526-692 459-649 (894)
360 KOG1550 Extracellular protein 55.7 2.5E+02 0.0055 32.4 14.7 83 610-694 343-430 (552)
361 PHA02875 ankyrin repeat protei 55.5 3.2E+02 0.0069 30.0 18.2 23 308-330 171-193 (413)
362 KOG1464 COP9 signalosome, subu 55.1 1.4E+02 0.0031 30.1 10.5 183 506-688 40-259 (440)
363 PF14561 TPR_20: Tetratricopep 54.4 30 0.00066 28.7 5.2 40 649-688 10-49 (90)
364 COG4785 NlpI Lipoprotein NlpI, 54.3 2.2E+02 0.0049 27.9 15.3 156 403-586 99-264 (297)
365 PF11838 ERAP1_C: ERAP1-like C 53.6 2.9E+02 0.0063 29.0 18.7 164 508-671 55-246 (324)
366 PF09670 Cas_Cas02710: CRISPR- 53.0 1.6E+02 0.0035 32.0 11.9 51 536-587 143-197 (379)
367 TIGR03504 FimV_Cterm FimV C-te 52.6 28 0.00061 24.4 3.9 25 169-193 5-29 (44)
368 PF13934 ELYS: Nuclear pore co 52.5 1.1E+02 0.0025 30.4 9.9 114 505-628 90-205 (226)
369 PRK13800 putative oxidoreducta 51.7 5.6E+02 0.012 31.7 23.2 250 153-427 625-876 (897)
370 KOG3807 Predicted membrane pro 51.2 1.9E+02 0.0041 30.1 10.9 161 472-664 230-399 (556)
371 PF11207 DUF2989: Protein of u 50.1 1.1E+02 0.0023 29.8 8.6 20 595-614 178-197 (203)
372 KOG4642 Chaperone-dependent E3 50.0 37 0.0008 33.6 5.5 67 622-688 38-105 (284)
373 PHA02537 M terminase endonucle 49.9 1.3E+02 0.0027 30.1 9.4 27 534-560 93-120 (230)
374 smart00028 TPR Tetratricopepti 49.0 30 0.00065 20.7 3.6 27 526-552 3-29 (34)
375 smart00386 HAT HAT (Half-A-TPR 47.7 26 0.00057 21.7 3.1 29 641-669 1-29 (33)
376 PF07720 TPR_3: Tetratricopept 47.7 37 0.00079 22.6 3.7 31 630-660 4-36 (36)
377 COG1488 PncB Nicotinic acid ph 47.5 22 0.00047 38.8 4.1 88 722-813 273-365 (405)
378 KOG2300 Uncharacterized conser 47.2 4.4E+02 0.0096 29.3 16.2 155 528-683 327-507 (629)
379 TIGR02508 type_III_yscG type I 46.7 1.3E+02 0.0028 25.5 7.3 79 111-193 20-98 (115)
380 PF10579 Rapsyn_N: Rapsyn N-te 46.0 34 0.00073 27.4 3.8 47 571-617 18-65 (80)
381 TIGR02270 conserved hypothetic 46.0 4.5E+02 0.0097 29.0 22.6 174 70-259 45-218 (410)
382 COG1747 Uncharacterized N-term 45.9 4.8E+02 0.01 29.3 19.9 189 492-687 65-285 (711)
383 PRK13342 recombination factor 45.7 4E+02 0.0087 29.4 13.9 45 334-378 228-275 (413)
384 KOG4507 Uncharacterized conser 45.6 66 0.0014 36.0 7.2 98 572-672 620-721 (886)
385 PRK11619 lytic murein transgly 45.0 5.9E+02 0.013 30.1 34.3 136 72-213 42-178 (644)
386 KOG4234 TPR repeat-containing 44.5 2.9E+02 0.0063 26.8 10.3 27 636-662 177-203 (271)
387 KOG0551 Hsp90 co-chaperone CNS 44.3 1E+02 0.0022 32.3 7.8 90 596-685 82-177 (390)
388 PF06957 COPI_C: Coatomer (COP 44.3 74 0.0016 34.8 7.4 41 620-660 291-333 (422)
389 PF10366 Vps39_1: Vacuolar sor 43.6 1.7E+02 0.0037 25.2 8.2 27 526-552 41-67 (108)
390 COG2976 Uncharacterized protei 43.4 2.6E+02 0.0056 27.1 9.8 57 307-363 131-189 (207)
391 PF14863 Alkyl_sulf_dimr: Alky 43.3 96 0.0021 28.3 6.9 66 611-679 57-122 (141)
392 smart00638 LPD_N Lipoprotein N 43.0 5.9E+02 0.013 29.5 21.0 63 196-263 308-371 (574)
393 PF15469 Sec5: Exocyst complex 42.8 1.8E+02 0.0038 27.8 9.3 88 564-667 91-179 (182)
394 PF13762 MNE1: Mitochondrial s 42.4 1E+02 0.0022 28.1 6.9 51 162-212 78-129 (145)
395 PF13929 mRNA_stabil: mRNA sta 42.3 4.1E+02 0.0089 27.5 13.9 115 315-429 141-264 (292)
396 KOG2659 LisH motif-containing 41.9 1.8E+02 0.0039 28.8 8.9 93 525-620 27-128 (228)
397 KOG3824 Huntingtin interacting 41.6 39 0.00085 34.5 4.5 62 605-666 126-189 (472)
398 PRK13800 putative oxidoreducta 41.4 7.8E+02 0.017 30.5 24.6 240 322-608 624-865 (897)
399 PF10579 Rapsyn_N: Rapsyn N-te 41.4 55 0.0012 26.3 4.4 45 639-683 18-65 (80)
400 PF12862 Apc5: Anaphase-promot 41.2 66 0.0014 26.8 5.3 51 638-688 9-68 (94)
401 TIGR03504 FimV_Cterm FimV C-te 41.0 51 0.0011 23.1 3.7 25 238-262 5-29 (44)
402 PF14561 TPR_20: Tetratricopep 40.7 2.1E+02 0.0046 23.7 8.7 63 626-688 21-86 (90)
403 PF13929 mRNA_stabil: mRNA sta 40.7 4.3E+02 0.0094 27.3 14.5 115 245-363 141-264 (292)
404 COG4976 Predicted methyltransf 39.8 53 0.0011 32.3 4.9 58 604-661 4-63 (287)
405 PF07163 Pex26: Pex26 protein; 39.3 2.9E+02 0.0063 28.3 10.0 89 530-621 89-184 (309)
406 KOG0545 Aryl-hydrocarbon recep 38.6 1.7E+02 0.0036 29.3 8.0 88 602-689 185-292 (329)
407 PF09045 L27_2: L27_2; InterP 38.5 53 0.0012 24.4 3.6 35 722-776 4-38 (58)
408 KOG4718 Non-SMC (structural ma 38.4 7.7 0.00017 36.9 -0.8 10 786-795 180-189 (235)
409 PRK11509 hydrogenase-1 operon 37.2 44 0.00096 30.0 3.8 73 700-789 30-103 (132)
410 KOG3507 DNA-directed RNA polym 36.8 13 0.00027 27.4 0.2 11 787-797 20-30 (62)
411 KOG0128 RNA-binding protein SA 36.7 8.1E+02 0.017 29.3 24.8 57 504-560 473-533 (881)
412 PRK10941 hypothetical protein; 36.7 1.7E+02 0.0037 30.0 8.4 65 599-663 185-251 (269)
413 PF11846 DUF3366: Domain of un 36.4 90 0.0019 30.2 6.2 37 622-658 139-175 (193)
414 PRK00366 ispG 4-hydroxy-3-meth 35.9 1.1E+02 0.0024 32.3 6.8 54 640-706 88-145 (360)
415 PF11663 Toxin_YhaV: Toxin wit 35.9 45 0.00097 29.8 3.4 33 344-378 106-138 (140)
416 KOG2471 TPR repeat-containing 35.7 6.6E+02 0.014 28.0 14.4 217 470-697 29-273 (696)
417 COG2178 Predicted RNA-binding 35.7 3.1E+02 0.0066 26.5 9.0 52 502-553 38-98 (204)
418 PF13762 MNE1: Mitochondrial s 34.7 3.6E+02 0.0079 24.7 10.7 89 484-572 28-128 (145)
419 cd08819 CARD_MDA5_2 Caspase ac 34.5 2.2E+02 0.0047 23.5 6.8 39 505-544 48-86 (88)
420 KOG1550 Extracellular protein 34.0 7.9E+02 0.017 28.4 18.7 209 473-689 308-537 (552)
421 KOG3824 Huntingtin interacting 33.8 68 0.0015 32.9 4.8 49 637-685 126-174 (472)
422 PF11525 CopK: Copper resistan 33.6 15 0.00034 28.0 0.2 20 806-825 8-27 (73)
423 PRK14015 pepN aminopeptidase N 33.2 4.7E+02 0.01 32.1 12.7 119 562-683 717-846 (875)
424 PF11848 DUF3368: Domain of un 32.6 1.3E+02 0.0029 21.4 5.0 34 242-275 12-45 (48)
425 cd08819 CARD_MDA5_2 Caspase ac 32.6 2E+02 0.0043 23.7 6.3 66 115-183 21-86 (88)
426 PF11846 DUF3366: Domain of un 32.2 1.2E+02 0.0025 29.3 6.3 32 555-586 140-171 (193)
427 PRK10564 maltose regulon perip 32.2 72 0.0016 32.9 4.7 41 234-274 259-299 (303)
428 PRK10564 maltose regulon perip 31.8 76 0.0016 32.8 4.8 41 526-566 259-299 (303)
429 KOG2396 HAT (Half-A-TPR) repea 31.7 7.8E+02 0.017 27.6 30.4 84 56-141 98-183 (568)
430 PF14669 Asp_Glu_race_2: Putat 30.5 5E+02 0.011 25.0 14.5 93 326-428 100-206 (233)
431 PHA02875 ankyrin repeat protei 30.4 7.5E+02 0.016 27.0 17.6 78 242-327 9-90 (413)
432 PF11838 ERAP1_C: ERAP1-like C 30.4 6.5E+02 0.014 26.3 17.8 28 216-243 55-84 (324)
433 KOG4077 Cytochrome c oxidase, 30.3 2.6E+02 0.0056 24.8 7.0 58 543-602 68-125 (149)
434 KOG4642 Chaperone-dependent E3 30.0 4.3E+02 0.0093 26.5 9.2 117 503-621 20-143 (284)
435 PF11848 DUF3368: Domain of un 29.8 1.2E+02 0.0027 21.6 4.4 37 171-207 10-46 (48)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 29.6 3.5E+02 0.0076 24.0 8.3 45 113-157 80-124 (126)
437 PF15015 NYD-SP12_N: Spermatog 29.4 1.1E+02 0.0025 32.9 5.7 47 636-682 237-283 (569)
438 COG0790 FOG: TPR repeat, SEL1 28.9 6.5E+02 0.014 25.8 16.0 47 642-691 206-267 (292)
439 KOG0889 Histone acetyltransfer 28.7 1.5E+03 0.031 32.5 16.3 31 456-486 2628-2660(3550)
440 PF14689 SPOB_a: Sensor_kinase 28.7 78 0.0017 24.1 3.4 30 523-552 22-51 (62)
441 PF14689 SPOB_a: Sensor_kinase 28.4 1E+02 0.0023 23.4 4.0 45 541-587 7-51 (62)
442 TIGR02710 CRISPR-associated pr 28.1 5.3E+02 0.011 28.0 10.6 29 533-561 139-167 (380)
443 PHA03100 ankyrin repeat protei 27.8 8.9E+02 0.019 27.0 15.2 14 314-327 117-130 (480)
444 cd08326 CARD_CASP9 Caspase act 27.5 2E+02 0.0042 23.6 5.7 62 116-182 19-80 (84)
445 PF01147 Crust_neurohorm: Crus 26.7 12 0.00027 29.3 -1.3 14 785-798 18-31 (73)
446 PF01347 Vitellogenin_N: Lipop 26.5 1.1E+03 0.023 27.6 15.2 57 200-260 348-406 (618)
447 COG4890 Predicted outer membra 26.3 38 0.00083 21.8 1.0 10 765-774 11-20 (37)
448 PF14376 Haem_bd: Haem-binding 26.2 24 0.00051 32.0 0.2 9 787-795 41-49 (137)
449 KOG0292 Vesicle coat complex C 26.0 9.2E+02 0.02 29.1 12.3 151 477-655 623-781 (1202)
450 COG3947 Response regulator con 25.8 1.2E+02 0.0025 31.2 4.8 58 371-429 282-339 (361)
451 KOG2063 Vacuolar assembly/sort 25.5 1.3E+03 0.028 28.2 24.7 39 318-361 494-532 (877)
452 PF12862 Apc5: Anaphase-promot 25.3 1.9E+02 0.0041 24.0 5.5 26 632-657 46-71 (94)
453 PF09477 Type_III_YscG: Bacter 25.2 3.9E+02 0.0085 23.0 7.0 81 109-193 19-99 (116)
454 COG4455 ImpE Protein of avirul 25.1 6.8E+02 0.015 24.8 12.1 124 527-663 4-141 (273)
455 KOG3364 Membrane protein invol 25.0 4.2E+02 0.009 24.0 7.5 28 634-661 78-105 (149)
456 PF11663 Toxin_YhaV: Toxin wit 25.0 68 0.0015 28.7 2.7 34 73-106 105-138 (140)
457 PF12968 DUF3856: Domain of Un 24.6 3.5E+02 0.0076 23.8 6.7 19 668-686 107-125 (144)
458 KOG4507 Uncharacterized conser 24.4 6.1E+02 0.013 29.0 10.2 131 555-688 567-703 (886)
459 PF04123 DUF373: Domain of unk 24.3 3E+02 0.0064 29.4 7.8 84 644-755 28-113 (344)
460 KOG4279 Serine/threonine prote 24.2 3.5E+02 0.0076 31.7 8.5 27 789-815 490-516 (1226)
461 cd00280 TRFH Telomeric Repeat 24.0 2.7E+02 0.0058 26.6 6.5 30 633-663 117-146 (200)
462 PRK11639 zinc uptake transcrip 23.9 2.2E+02 0.0048 26.9 6.3 38 538-575 39-76 (169)
463 smart00544 MA3 Domain in DAP-5 23.8 4.6E+02 0.01 22.4 8.0 61 66-126 5-67 (113)
464 PF08225 Antimicrobial19: Pseu 23.8 30 0.00064 19.5 0.2 9 793-801 12-20 (23)
465 KOG4077 Cytochrome c oxidase, 23.4 3.1E+02 0.0067 24.4 6.3 44 613-656 70-113 (149)
466 COG5431 Uncharacterized metal- 23.1 24 0.00053 29.4 -0.3 11 819-829 47-57 (117)
467 PF13971 Mei4: Meiosis-specifi 23.1 47 0.001 35.4 1.6 22 761-782 18-40 (375)
468 TIGR02414 pepN_proteo aminopep 23.0 1.1E+03 0.023 29.1 13.1 152 528-683 676-836 (863)
469 KOG0686 COP9 signalosome, subu 23.0 1E+03 0.022 26.0 12.7 172 305-520 153-331 (466)
470 PF11768 DUF3312: Protein of u 22.1 1.2E+03 0.026 26.6 12.2 55 136-190 412-471 (545)
471 KOG2422 Uncharacterized conser 22.1 1.2E+03 0.026 26.7 11.9 123 569-691 248-408 (665)
472 COG2178 Predicted RNA-binding 22.0 6.3E+02 0.014 24.4 8.6 19 671-689 131-149 (204)
473 smart00777 Mad3_BUB1_I Mad3/BU 22.0 3.6E+02 0.0078 24.0 6.7 42 115-156 82-123 (125)
474 smart00777 Mad3_BUB1_I Mad3/BU 21.7 2.6E+02 0.0056 24.9 5.8 68 612-685 50-123 (125)
475 PF00244 14-3-3: 14-3-3 protei 21.3 8.4E+02 0.018 24.4 10.6 160 530-690 7-198 (236)
476 PF12554 MOZART1: Mitotic-spin 21.1 2.2E+02 0.0047 20.5 4.1 35 70-104 11-45 (48)
477 COG3043 NapB Nitrate reductase 21.0 70 0.0015 28.8 2.0 41 735-805 62-102 (155)
478 cd08332 CARD_CASP2 Caspase act 20.9 3.7E+02 0.0079 22.3 6.2 58 117-179 24-81 (90)
479 PF05119 Terminase_4: Phage te 20.9 2.2E+02 0.0048 23.8 5.2 36 714-749 57-92 (100)
480 COG0735 Fur Fe2+/Zn2+ uptake r 20.9 3.2E+02 0.007 25.0 6.5 48 528-575 24-71 (145)
481 cd08326 CARD_CASP9 Caspase act 20.5 3.4E+02 0.0074 22.1 5.9 62 478-543 19-80 (84)
482 TIGR02710 CRISPR-associated pr 20.5 1.1E+03 0.024 25.6 11.3 18 503-520 140-157 (380)
483 TIGR01503 MthylAspMut_E methyl 20.4 5.5E+02 0.012 28.4 8.9 187 418-642 29-241 (480)
484 PF04190 DUF410: Protein of un 20.1 9.3E+02 0.02 24.5 16.4 28 401-428 88-115 (260)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5e-157 Score=1412.91 Aligned_cols=768 Identities=41% Similarity=0.796 Sum_probs=746.7
Q ss_pred ccCCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchH
Q 047408 58 TLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDT--KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLG 135 (830)
Q Consensus 58 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 135 (830)
..+++...+|.+|.+|++.|++++|+.+|++|...|+.| .+|..++++|.+.+.++.|.++|+.+.+.|..++ ..++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG-VRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCC-chHH
Confidence 345778889999999999999999999999999987555 5999999999999999999999999999999888 9999
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCC
Q 047408 136 SKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSR 215 (830)
Q Consensus 136 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 215 (830)
|+|+++|+++|+++.|+++|++|++||+++||+||++|++.|++++|+++|++|...|+.||.+||+++|++|+..++..
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999888877776665443321
Q ss_pred --------------------------------CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047408 216 --------------------------------RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGF 263 (830)
Q Consensus 216 --------------------------------~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 263 (830)
++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHH
Q 047408 264 NVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGY 343 (830)
Q Consensus 264 ~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~ 343 (830)
.||..||++++.+|++.|+++.|+++|..+.+.|+.||+.+||+||++|+++|++++|.++|++|..||+++||+||.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH
Q 047408 344 AREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE 423 (830)
Q Consensus 344 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 423 (830)
+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchhHHHHHH----------HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 424 SVFNQMPVKDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 424 ~~f~~m~~~~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
++|++|.++|+++||+||. |+++|++|....+||.+||+++|.+|++.|+++.|+++|..+++.|+.+|.
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 9999999999999999998 999999998645999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG 573 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 573 (830)
.++|+||++|+|||++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+++|.+|++.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 574 LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++++|+++|+.|.+++|+.|+..||+||+++|+|+|+++||++++++||++||..+|++|+++|+.||+.+.|+.+++++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHH
Q 047408 654 FELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLE 733 (830)
Q Consensus 654 ~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~ 733 (830)
++++|++++.|++|+|+|++.|+|++|.++|+.|+++|++|+||+||||++|++|.|.+||++||+.++||.+|++|..+
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCCCCCeEEEEecccccccccchhhhhhccccceEEEecC
Q 047408 734 MKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDS 813 (830)
Q Consensus 734 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 813 (830)
|++.||+||+++++ |++|++||..|++||||||||||||+||||+||||+||||||+|||+++||||||++|||||||+
T Consensus 764 ~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 842 (857)
T PLN03077 764 MKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDT 842 (857)
T ss_pred HHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecC
Confidence 99999999999988 55889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCccccCCC
Q 047408 814 NRFHHFKDGRCSCRG 828 (830)
Q Consensus 814 ~rfh~f~~g~csc~d 828 (830)
+|||||+||+|||||
T Consensus 843 ~rfh~f~~g~csc~d 857 (857)
T PLN03077 843 EQFHHFKDGECSCGD 857 (857)
T ss_pred CcceeCCCCcccCCC
Confidence 999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.9e-133 Score=1180.12 Aligned_cols=602 Identities=36% Similarity=0.663 Sum_probs=595.2
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH
Q 047408 229 DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLG-FNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT 307 (830)
Q Consensus 229 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 307 (830)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.++++|..+++.|+.||+.++|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhh
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIG 387 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 387 (830)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH----------HHHHHHHHHhCC-CC
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------ALDLFVAMLQNF-EP 456 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~----------al~~f~~m~~~~-~p 456 (830)
+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+.+|+++||+||. |+++|++|...| .|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999 99
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHh
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGM 536 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 536 (830)
|.+||++++.+|++.|.+++|+++|..+.+.|+++|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
+|++++|+++|++|.+.|+.||.+||++++++|++.|++++|.++|+.|.+++|+.|+..||++||++|+|+|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCC
Q 047408 617 FIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNP 696 (830)
Q Consensus 617 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~ 696 (830)
+|++|+++||..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCC
Q 047408 697 GCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLP 776 (830)
Q Consensus 697 ~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~ 776 (830)
|+|||++++++|.|.+||.+||+.++||.+|++|..+|++.||+||+.+++||+++++||..|++||||||||||||+||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccccccccchhhhhhccccceEEEecCCccccccCccccCCCCC
Q 047408 777 AGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830 (830)
Q Consensus 777 ~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 830 (830)
||+||||+||||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-82 Score=766.35 Aligned_cols=613 Identities=27% Similarity=0.444 Sum_probs=526.4
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 047408 132 GVLGSKLVFMFVTCGDLKEGRRVFNKIDN----GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKC 207 (830)
Q Consensus 132 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 207 (830)
...+|.++..|++.|++++|..+|+.|.. ++..+|+.++.++.+.+.++.|..++..+.+.|..++...++++|.+
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 44455555555555556666555555543 45677888889999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHH
Q 047408 208 LAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGR 287 (830)
Q Consensus 208 ~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~ 287 (830)
|++.| +++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..++
T Consensus 131 ~~~~g---~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 131 FVRFG---ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHhCC---ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 047408 288 AVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPD 367 (830)
Q Consensus 288 ~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 367 (830)
++|..+++.|+.+|+.++|+||++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH-----
Q 047408 368 VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----- 442 (830)
Q Consensus 368 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~----- 442 (830)
.+||++++.+|++.|+++.|+++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..+|+++||+||.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----HHHHHHHHHhCC-CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHh
Q 047408 443 -----ALDLFVAMLQNF-EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLF 516 (830)
Q Consensus 443 -----al~~f~~m~~~~-~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 516 (830)
|+++|++|...| .||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 517 DMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 517 ~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|.+++|.+++..|.+ .|+.|+..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccce
Confidence 999999999999999999999999999999999986 6999999999999999999999999999999875 48888877
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCcchHHHHHHHHhhh
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE--LEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~ 674 (830)
++++|+++|+++|++++|.++|+++ +||..+|++++.+|..+|+.++|..+++++.+ +.|+ ..+|..+...|.+.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhc
Confidence 7777777777777777777777666 56666666666666666666666666666654 3344 33444455555555
Q ss_pred cCHHHHHHHHHHHH-hCCCcCCCc-------------------------------eeEEEECCE--EEEEE-----eC--
Q 047408 675 EKWEEVKKLREKIS-RRGLKKNPG-------------------------------CSWIEIKGK--VNIFV-----AG-- 713 (830)
Q Consensus 675 g~~~~A~~~~~~m~-~~g~~~~~~-------------------------------~swi~~~~~--~~~f~-----~~-- 713 (830)
|++++|.++++.|+ +.|+.|+.. ..|..+-+. .|.-. +.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 55555555555555 344444321 123211000 01000 00
Q ss_pred -CcCCCChhHHHHHH-------------HHHHHHHHHcCccCCCCccccccch
Q 047408 714 -GSSHPHAKKIESLL-------------KRLRLEMKREGYFPKTRYALINADE 752 (830)
Q Consensus 714 -~~~~p~~~~i~~~l-------------~~l~~~~~~~g~~~~~~~~~~~~~~ 752 (830)
-...|+....|..| .++++.|++.|..++++++|.++..
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 12456655555555 4688999999999999999877653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-68 Score=626.92 Aligned_cols=531 Identities=17% Similarity=0.242 Sum_probs=480.5
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC
Q 047408 80 EKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID 159 (830)
Q Consensus 80 ~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 159 (830)
..++...+.......+...|..++..|++.|++++|.++++.|.+.|+.+.+...++.++..|.+.|.+++|.++|+.|+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 354 ENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 33444444444333344588889999999999999999999999999776658888999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC----CCCcchH
Q 047408 160 NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS----DRDVVSW 235 (830)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~----~~~~~~~ 235 (830)
.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.| ++++|.++|++|. .||.++|
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G---~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG---KVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc---CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999 5999999999998 5899999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCCchHHHHHHHHhh
Q 047408 236 NCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK--ACFSKEISFNNTLLDMYS 313 (830)
Q Consensus 236 n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~Li~~y~ 313 (830)
|+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+|++||++|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 688999999999999999
Q ss_pred cCCChHHHHHHHhhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhh
Q 047408 314 KCGDLDGAIRVFEKMGE----RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKD 389 (830)
Q Consensus 314 k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 389 (830)
++|++++|.++|+.|.+ |+.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999976 56799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC----CCCchhHHHHHH----------HHHHHHHHHhCC-
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP----VKDIVSWNTMIG----------ALDLFVAMLQNF- 454 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~~~~~~n~~i~----------al~~f~~m~~~~- 454 (830)
+|..|.+.|+.||..+|++||++|+++|++++|.++|++|. .+|+++||+||. |+++|++|...|
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999994 689999999998 999999999999
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHH----HHhcCCHHHHHHHhhhCCCCChhhHHHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDM----YVKCGVLVLARSLFDMIPAKDLISWTIM 530 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~----y~k~g~~~~A~~~f~~m~~~d~~~~~~l 530 (830)
.||..||++++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+++ |.++++..++...|+.+...+...|+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~-- 828 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT-- 828 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH--
Confidence 999999999999999999999999999999999999999999999987 45566666666666655555555665
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 047408 531 IAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGN 610 (830)
Q Consensus 531 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 610 (830)
++|+.+|++|++.|+.||.+||+.+|.++...+..+.+..+++.|... +..|+..+|+++|+.+++.
T Consensus 829 ----------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~-- 895 (1060)
T PLN03218 829 ----------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY-- 895 (1060)
T ss_pred ----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--
Confidence 469999999999999999999999997777778888777777776533 6667788999999998543
Q ss_pred HHHHHHHHHhC---CCCCCHH
Q 047408 611 LSEAYRFIEMM---PVAPDAT 628 (830)
Q Consensus 611 ~~eA~~~~~~m---~~~p~~~ 628 (830)
.++|..++++| ++.|+..
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCcc
Confidence 47899999998 6677654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-67 Score=619.25 Aligned_cols=576 Identities=17% Similarity=0.258 Sum_probs=505.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHH
Q 047408 161 GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGI-AADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMI 239 (830)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li 239 (830)
++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.| .+++|.++|+.|+.||..+||.||
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g---~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR---AVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4677899999999999999999999999999995 578888899999999988 699999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChH
Q 047408 240 SGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLD 319 (830)
Q Consensus 240 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 319 (830)
.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.+.+++..|.+.|+.||..+||+||++|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCcchHHHHHHHhhccCcchhhhhHHHH
Q 047408 320 GAIRVFEKMGE----RSVVSWTSMIAGYAREGVFDGAIRLFRGMVR--EGIEPDVYAITSILHACACDGLLEIGKDVHDY 393 (830)
Q Consensus 320 ~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 393 (830)
+|.++|+.|.. ||.++||+||.+|++.|++++|.++|.+|.. .|+.||.+||++++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999964 8999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred HHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhh
Q 047408 394 IKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAA 473 (830)
Q Consensus 394 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~ 473 (830)
|.+.|+.|+..+||+||++|++.|++++|.++|++|...++ .||.+||++++.+|++.|+
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv--------------------~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV--------------------KPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------CCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999988877655 7999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AKDLISWTIMIAGYGMHGFGCDAIATFND 549 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 549 (830)
+++|.++|..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999994 78999999999999999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hcC----------------
Q 047408 550 MRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLS----RTG---------------- 609 (830)
Q Consensus 550 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~----r~g---------------- 609 (830)
|.+.|+.||.+||+.++.+|.+.|++++|.++|+.|.+. |+.|+..+|++|++++. +++
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~ 823 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 999999999999999999999999999999999999855 99999999999998743 333
Q ss_pred ---CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCCCCcchHHHHHHHHhhhcCH-HHHH
Q 047408 610 ---NLSEAYRFIEMM---PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVF-ELEPDNTGYYVLLANVYAEAEKW-EEVK 681 (830)
Q Consensus 610 ---~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~l~p~~~~~~~~l~~~y~~~g~~-~~A~ 681 (830)
..++|..+|++| ++.||..+|++++.++...+..+.+..+++.+. +-.+.+..+|..|.+.+ |++ ++|.
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~ 900 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAF 900 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHH
Confidence 347899999999 789999999999987778888998888887654 33455677899998877 443 5899
Q ss_pred HHHHHHHhCCCcCCCce--e-EEEECCEEEEEEeCCcCCCChhH--HHHHHHHHHHHHHHcCccCCCCccccccchhhhH
Q 047408 682 KLREKISRRGLKKNPGC--S-WIEIKGKVNIFVAGGSSHPHAKK--IESLLKRLRLEMKREGYFPKTRYALINADEMEKE 756 (830)
Q Consensus 682 ~~~~~m~~~g~~~~~~~--s-wi~~~~~~~~f~~~~~~~p~~~~--i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 756 (830)
.++++|...|+.|+... + |.- .+|.| -+...+ +...|..|+..+...-..|.....+++ ++.++.
T Consensus 901 ~l~~em~~~Gi~p~~~~~~~~~~~---d~~~~------~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~-~~~~~~ 970 (1060)
T PLN03218 901 SLLEEAASLGVVPSVSFKKSPIVI---DAEEL------PVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT-EKKEIY 970 (1060)
T ss_pred HHHHHHHHcCCCCCcccccCceEE---EcccC------cchhHHHHHHHHHHHHHHHHhccCcCCcceeeecc-ccceee
Confidence 99999999999987641 1 321 11222 222333 344556666665443356776665665 443322
Q ss_pred HHhhhhH----HHHHHHHHhh
Q 047408 757 VALCGHS----EKLAMAFGIL 773 (830)
Q Consensus 757 ~~l~~hs----e~la~a~~~~ 773 (830)
..-..|+ -+||-+|+-+
T Consensus 971 ~~~g~~~~~~~~~~~~~~~~~ 991 (1060)
T PLN03218 971 TPKGEKTINLAGRVGQAVAAL 991 (1060)
T ss_pred ccCCchhHHHHHHHHHHHHHH
Confidence 2222233 3477777654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.9e-67 Score=615.86 Aligned_cols=461 Identities=26% Similarity=0.461 Sum_probs=385.5
Q ss_pred CCCcchhHHHHHHHhcCChHHHHHHHHHhhcCC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHH
Q 047408 61 CKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSK---IDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSK 137 (830)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 137 (830)
.+..+|+.+|.++.+.|++++|+++|+.|...+ |++.+|+.++.+|++.++++.|.++|..+.+.|+.|+ ..++|.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHH
Confidence 355689999999999999999999998887643 3446888888888888888888888888888888777 777777
Q ss_pred HHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCH
Q 047408 138 LVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRV 217 (830)
Q Consensus 138 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 217 (830)
|+++|+++|++++|+++|++|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~---------------------------------------------------------- 185 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP---------------------------------------------------------- 185 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----------------------------------------------------------
Confidence 7777777776665555555554
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 047408 218 KDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKAC 297 (830)
Q Consensus 218 ~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 297 (830)
+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.|+++|..+.+.|
T Consensus 186 -----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 186 -----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred -----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 445566666677777777888899999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 047408 298 FSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHA 377 (830)
Q Consensus 298 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 377 (830)
+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC
Q 047408 378 CACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD 457 (830)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd 457 (830)
|++.|+++.|+++|..|.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|+++||+||
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI---------------- 398 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI---------------- 398 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999887776666655
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCChhhHHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKDLISWTIMIA 532 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~ 532 (830)
.+|++.|+.++|.+++..|.+.|+.||..+|++++.+|++.|.+++|.++|+.|. .|+..+|++||.
T Consensus 399 --------~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 399 --------AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred --------HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 5666777777777777777777777777777777777777777777777777664 356667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCH
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~ 611 (830)
+|++.|+.++|.++|++| ++.||..+|++|+.+|...|+++.|..+++.+. ++.|+ ..+|..|+++|++.|++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCH
Confidence 777777777777776665 467777777777777777777777777777664 56664 56777777777777777
Q ss_pred HHHHHHHHhC
Q 047408 612 SEAYRFIEMM 621 (830)
Q Consensus 612 ~eA~~~~~~m 621 (830)
++|.++++.|
T Consensus 545 ~~A~~v~~~m 554 (697)
T PLN03081 545 AEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHH
Confidence 7777777777
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=5.2e-40 Score=285.48 Aligned_cols=106 Identities=62% Similarity=1.071 Sum_probs=99.3
Q ss_pred ceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCccCCCCccccccchhhh--------HHHhhhhHHHHHH
Q 047408 697 GCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEK--------EVALCGHSEKLAM 768 (830)
Q Consensus 697 ~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~l~~hse~la~ 768 (830)
||||+++ |.|++||.+||+. ++..+++..||.|++..+.||++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999988 9999999999998 455677889999999999999988776 6799999999999
Q ss_pred HHHhhcCCCCCeEEEEecc-cccccccchhhhhhccccceEEEecCCcccccc
Q 047408 769 AFGILNLPAGQTIRVTKNL-RVCGDCHEMAKFMSKTARREIVLRDSNRFHHFK 820 (830)
Q Consensus 769 a~~~~~~~~~~~~~~~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 820 (830)
|||||++ ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.7e-32 Score=331.50 Aligned_cols=616 Identities=13% Similarity=0.057 Sum_probs=296.8
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCC----------
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIV---------- 128 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---------- 128 (830)
|.+...|..++..+...|++++|...++.+....|+.. ........+...|+++.|...+..+.+.+..
T Consensus 224 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 224 PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34555666666666666666666666666655444321 1111122223344555555555544443211
Q ss_pred ----------------------CCccchHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHH
Q 047408 129 ----------------------IDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDN---GKVFIWNLLMHEYSKTGNFKESL 183 (830)
Q Consensus 129 ----------------------~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 183 (830)
|++......+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 22233344444444445555555544444321 12334444445555555555555
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047408 184 YLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLN 260 (830)
Q Consensus 184 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 260 (830)
++|+++.+.. +.+...+..+...+...| +.++|.+.|+.... .+...+..++..|.+.|++++|++++.++..
T Consensus 384 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 384 EYLAKATELD-PENAAARTQLGISKLSQG---DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5555444321 112223333333333444 24444444443321 1223344444555555555555555555543
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHH
Q 047408 261 LGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWT 337 (830)
Q Consensus 261 ~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~ 337 (830)
. .+++..++..+...+...|+.+.+.+.+..+++.. +.+...+..+...|.+.|++++|.+.|+.+.. .+..+++
T Consensus 460 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 460 K-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred h-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 2 22334445555555555555555555555554432 22333444455555555555555555555432 2344455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcC
Q 047408 338 SMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCG 417 (830)
Q Consensus 338 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 417 (830)
.+...+.+.|+.++|...|+++...+ +.+...+..+...+...|++++|.+++..+.+.. +.+..++..+...|.+.|
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555554432 2233344444555555555555555555554432 334445555555555555
Q ss_pred ChHHHHHHHhcCCCC---CchhHHHHHH----------HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHH
Q 047408 418 SMADAESVFNQMPVK---DIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYI 484 (830)
Q Consensus 418 ~~~~A~~~f~~m~~~---~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 484 (830)
++++|...|+.+.+. +...|..+.. |+..|.++....+.+..++..+...+...|++++|.+++..+
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555544321 2222332222 445555544433334444455555555555555555555555
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 047408 485 LRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF 562 (830)
Q Consensus 485 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~ 562 (830)
.+.+ +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+. .+.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 4443 3344444555555555555555555555443 233344444555555555555555555555543 12223344
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH 640 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 640 (830)
..+...|...|+.++|.++|+.+... -+++...+..+..++.+.|+ ++|++.++++ ...| +..+|..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 44445555555555555555555422 11234445555555555555 5555555544 2223 234455555555555
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-31 Score=328.27 Aligned_cols=629 Identities=13% Similarity=0.075 Sum_probs=380.6
Q ss_pred CCCcchhhhhhhc----cCCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHH
Q 047408 46 CTINPISASISKT----LVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHS 120 (830)
Q Consensus 46 ~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~ 120 (830)
.+....+...++. .|++...|..+...+...|++++|...|++.....|.. ..+..+...+...|+++.|...++
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455556555443 35677788888899999999999999999998877654 477778888889999999999999
Q ss_pred HHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 047408 121 IICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK---VFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAAD 197 (830)
Q Consensus 121 ~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 197 (830)
.+.+... ++..........+...|++++|...|+.+.+.+ ...+..+...+.+.|++++|...|+++.+.. +.+
T Consensus 252 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 252 ALLKKAP--NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred HHHHhCC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9988653 324444444455667788888888887764322 2233444556667777777777777766542 223
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHH
Q 047408 198 SYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV-DLATMVTV 273 (830)
Q Consensus 198 ~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~l 273 (830)
...+..+...+...| +.++|...++.+.. .+...|+.+...|.+.|++++|.+.|+++.+. .| +...+..+
T Consensus 329 ~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 403 (899)
T TIGR02917 329 HQARRLLASIQLRLG---RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQL 403 (899)
T ss_pred hHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 344455555566666 46666666665532 34556666667777777777777777766553 23 23344444
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChh
Q 047408 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFD 350 (830)
Q Consensus 274 l~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~ 350 (830)
...+...|+.+.+...+..+.+.... .......++..|.+.|+.++|.++++.+.. .+...|+.+...|...|+++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 482 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA 482 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHH
Confidence 44555566666666665555544321 122233344445555555555555544432 23334444555555555555
Q ss_pred HHHHHHHHHHHcC---------------------------------CCCCcchHHHHHHHhhccCcchhhhhHHHHHHhh
Q 047408 351 GAIRLFRGMVREG---------------------------------IEPDVYAITSILHACACDGLLEIGKDVHDYIKEN 397 (830)
Q Consensus 351 ~A~~l~~~m~~~g---------------------------------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 397 (830)
+|...|+++.+.. .+.+..++..+...+...|+.++|..++..+.+.
T Consensus 483 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555444321 1122333444444444445555555555444443
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHH----------HHHHHHHHHhCCCCCccccccc
Q 047408 398 DMQSSLYVSNALMDMYAKCGSMADAESVFNQMPV---KDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACI 464 (830)
Q Consensus 398 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~l 464 (830)
+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+.. |++.|.++....+.+...+..+
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 641 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3 23334444455555555555555555554432 12333433332 5555555554433344445555
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~ 541 (830)
..++...|+.++|..++..+.+.. +.+...+..++..|.+.|++++|.++++.+.. .+...|..+...|...|+++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 555555566666666666555533 33455556666666666666666666665542 24455666666666777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 542 DAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+|++.|+++... .|+..++..+..++.+.|++++|.+.++.+... .+.+...+..+...|.+.|++++|.+.|+++
T Consensus 721 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 721 AAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 777777777663 455556666667777777777777777776643 2234566777777777778888888777776
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 622 -PVA-PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 622 -~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
... +++.+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 223 356777777777777777 66888888888888888777778888888888888888888777653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.8e-22 Score=248.26 Aligned_cols=596 Identities=11% Similarity=0.039 Sum_probs=408.9
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhH-----------------HHHHHHHhccCChhHHHHHHHHH
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTY-----------------CSILQLCADLKSLEDGKKVHSII 122 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~ 122 (830)
|.++..+..++..+.+.|+.++|...+++..+..|+...+ ..+.+.+...|++++|.+.+..+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5577778888888899999999999999988877755322 22234567789999999999988
Q ss_pred HHhCCCCCccch-HHHHHHHHHhCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC---
Q 047408 123 CESGIVIDDGVL-GSKLVFMFVTCGDLKEGRRVFNKIDNG---KVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIA--- 195 (830)
Q Consensus 123 ~~~g~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--- 195 (830)
.+.. |++..+ ...+.......|+.++|++.|+++... +...+..+...+...|+.++|+..|+++......
T Consensus 139 l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 8754 221221 111222223458899999999887643 4557888888899999999999999988653210
Q ss_pred -------------CCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 047408 196 -------------ADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS----DRDVVSWNCMISGYIANGVAEKGLEVFKEM 258 (830)
Q Consensus 196 -------------p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~----~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 258 (830)
++......+-.......+...+..|...+++.. .|+.. ...+...+...|++++|+..|++.
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000000011111111111112344555554432 12211 123345667788888888888888
Q ss_pred HHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCc-hHH------------HHHHHHhhcCCChHHHHHH
Q 047408 259 LNLGFNV-DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEI-SFN------------NTLLDMYSKCGDLDGAIRV 324 (830)
Q Consensus 259 ~~~g~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~------------~~Li~~y~k~g~~~~A~~~ 324 (830)
++. .| +...+..+-.++.+.|+.++|...+..+++....... ..+ ..+...+.+.|++++|.+.
T Consensus 296 L~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 764 34 5566677777778888888888888888776443221 111 1223456778888888888
Q ss_pred HhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCcchhhhhHHHHHHhhcC-
Q 047408 325 FEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGLLEIGKDVHDYIKENDM- 399 (830)
Q Consensus 325 f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~- 399 (830)
|++... .+...+..+...|.+.|++++|++.|++..+. .|+. ..+..+...+ ..++.++|..++..+....-
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHH
Confidence 887754 24556777778888888888888888888764 3443 3344444444 33456777766655432210
Q ss_pred -------CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchh
Q 047408 400 -------QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLA 472 (830)
Q Consensus 400 -------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~ 472 (830)
......+..+...|...|++++|.+.|++..+.+ +-+...+..+...+...|
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---------------------P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---------------------PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcC
Confidence 0011234556777788888888888887765543 123345566777888999
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC----hh---------hHHHHHHHHHhcCC
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD----LI---------SWTIMIAGYGMHGF 539 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d----~~---------~~~~li~~~~~~g~ 539 (830)
+.++|...++.+++.. +.+.....++...+.+.|+.++|...++.++... .. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998754 3455566666667888999999999999886431 11 12345677889999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
.++|+++++. ..++...+..+...+...|+.++|++.|+.... ..|+ ...+..++.+|...|++++|++.+
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999872 233444667777889999999999999999874 4564 778889999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc------hHHHHHHHHhhhcCHHHHHHHHHHHH-h
Q 047408 619 EMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG------YYVLLANVYAEAEKWEEVKKLREKIS-R 689 (830)
Q Consensus 619 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m~-~ 689 (830)
+.. ...|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|++++|.+.++... .
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 987 34554 567788888899999999999999999998776543 55667999999999999999977764 3
Q ss_pred CCCc
Q 047408 690 RGLK 693 (830)
Q Consensus 690 ~g~~ 693 (830)
.|+.
T Consensus 741 ~~~~ 744 (1157)
T PRK11447 741 SGIT 744 (1157)
T ss_pred cCCC
Confidence 4453
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.7e-22 Score=250.28 Aligned_cols=592 Identities=12% Similarity=0.070 Sum_probs=365.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchH------------
Q 047408 69 EIGRFCEVGNLEKAMEVLYSSEKSKID-TKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLG------------ 135 (830)
Q Consensus 69 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~------------ 135 (830)
.+..+...++.+.|.+.++++....|+ |..+..+...+...|+.++|.+.++++.+.. |++....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCc
Confidence 345567788999999999998877764 4577788888889999999999999998865 4323322
Q ss_pred ----HHHHHHHHhCCChHHHHHHHhcCCCCCcchHH----HHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cccHHHHHH
Q 047408 136 ----SKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWN----LLMHEYSKTGNFKESLYLFKKMQSLGIAAD-SYTFSCVLK 206 (830)
Q Consensus 136 ----~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 206 (830)
..+...+.+.|++++|.+.|+.....+..... .........|+.++|++.|+++.+.. |+ ...+..+-.
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 22233566677777777777765433221110 11111123467777777777776642 33 233444444
Q ss_pred HHHhcCCCCCHHHHHHHHhhCCCCCc------chHH-----------------HHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047408 207 CLAVVGNSRRVKDAHKLFDELSDRDV------VSWN-----------------CMISGYIANGVAEKGLEVFKEMLNLGF 263 (830)
Q Consensus 207 ~~~~~g~~~~~~~A~~lf~~m~~~~~------~~~n-----------------~li~~~~~~g~~~~A~~l~~~m~~~g~ 263 (830)
.+...| +.++|.+.|+++...+. ..|- ..+..+-......+|...+.++.....
T Consensus 190 ll~~~g---~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 190 LLFSSG---RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHccC---CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 555455 46667776666532111 0110 001111111112233333333332222
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--CCe---ehHHH
Q 047408 264 NVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--RSV---VSWTS 338 (830)
Q Consensus 264 ~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~---~~~~~ 338 (830)
.|+.... ..-.++...|+++.|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+ |+. ..|..
T Consensus 267 dp~~~~~-~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 267 DPAFRAR-AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred CcchHHH-HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 2221110 11223344556666666666655542 22444555555666666666666666655433 211 11221
Q ss_pred H------------HHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhH
Q 047408 339 M------------IAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVS 406 (830)
Q Consensus 339 l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 406 (830)
+ ...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+..+++.. +.+...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 1 223445566666666666665531 1122334444455555666666666666665543 2233444
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHH
Q 047408 407 NALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILR 486 (830)
Q Consensus 407 ~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 486 (830)
..+...|. .++.++|...++.+............. ......+......+...|+.++|.+.+..+++
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~------------~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER------------SLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH------------HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555553 345566666555544321100000000 00011233344566778999999999999988
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--- 560 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--- 560 (830)
.. +.+..++..+...|.+.|++++|...|+++. ..+...+..+...+...|+.++|+..++++......++..
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 65 4467788889999999999999999999864 3355566666667788999999999999875433222221
Q ss_pred ------HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047408 561 ------SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGS 632 (830)
Q Consensus 561 ------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ 632 (830)
.+..+...+...|+.++|.++++. ..++...+..+.+.|.+.|++++|++.+++. ...| +...+..
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 133456678899999999998872 2235567788999999999999999999987 4556 4688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
+...+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++.+....
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999999999999999999887543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.4e-20 Score=222.45 Aligned_cols=598 Identities=10% Similarity=0.007 Sum_probs=417.0
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHH
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLV 139 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li 139 (830)
|.+...+..+...|.+.|++++|+..+++.....|+...|..++... ++.+.|..+++++.+.. |++..++..+.
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~--P~n~~~~~~la 149 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ--KACDAVPTLRC 149 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC--CCChhHHHHHH
Confidence 45667788888999999999999999999988877655555544333 78888999999998865 44455665566
Q ss_pred HH--------HHhCCChHHHHHHHhcCCCCC--cch-HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 047408 140 FM--------FVTCGDLKEGRRVFNKIDNGK--VFI-WNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCL 208 (830)
Q Consensus 140 ~~--------y~~~g~~~~A~~~f~~m~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 208 (830)
.. |.+.+...+|++ .....++ ..+ .-.+...|.+.|++++|++++.++.+.+... ..-...+-.++
T Consensus 150 ~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay 226 (987)
T PRK09782 150 RSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVL 226 (987)
T ss_pred HHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 55 777766666666 3333333 333 4444889999999999999999999986333 33344555566
Q ss_pred Hh-cCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHhcCCChHHH
Q 047408 209 AV-VGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN-VDLATMVTVLSGCANCGALMFG 286 (830)
Q Consensus 209 ~~-~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~~ 286 (830)
.. .+ + +.+..++....+.|...+..+...|.+.|+.++|.++++++...-.. |+..++..++.-....... +
T Consensus 227 ~q~l~---~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~--~ 300 (987)
T PRK09782 227 LAGQL---D-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ--A 300 (987)
T ss_pred HHhhC---H-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh--h
Confidence 65 34 3 77888877655578889999999999999999999999998765433 6666665554433322100 0
Q ss_pred HHHHHHHHHhCCCCC-chHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHH--HHhcCChhHHHHHHHHHHHcC
Q 047408 287 RAVHAFALKACFSKE-ISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAG--YAREGVFDGAIRLFRGMVREG 363 (830)
Q Consensus 287 ~~l~~~~~~~g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g 363 (830)
..-+. + .+.++ ....-++++.+.+.+..+.|.++.+.-+ .+. . ..+.. ....+...++....+.|.+.
T Consensus 301 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~- 371 (987)
T PRK09782 301 LANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP-ANE-M--LEERYAVSVATRNKAEALRLARLLYQQ- 371 (987)
T ss_pred ccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC-cch-H--HHHHHhhccccCchhHHHHHHHHHHhc-
Confidence 00000 0 01111 1122455889999999998888855222 222 2 23322 22346777788888888765
Q ss_pred CCC-CcchHHHHHHHhhccCcchhhhhHHHHHHhh-c-CCCchhhHHHHHHHHHhcCChH---HHHHHHhcCCCCCchhH
Q 047408 364 IEP-DVYAITSILHACACDGLLEIGKDVHDYIKEN-D-MQSSLYVSNALMDMYAKCGSMA---DAESVFNQMPVKDIVSW 437 (830)
Q Consensus 364 ~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~~~---~A~~~f~~m~~~~~~~~ 437 (830)
.| +....--+---....|+.++|.+++...... + -..+....+-|+..|.+.+.++ +|..+-..+..+..-.|
T Consensus 372 -~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 372 -EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred -CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 22 2222222222345778999999999988763 1 2235566778999999999844 44444443444433333
Q ss_pred HHHHH----HHHHHHHHHhCCCC--CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHH
Q 047408 438 NTMIG----ALDLFVAMLQNFEP--DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVL 511 (830)
Q Consensus 438 n~~i~----al~~f~~m~~~~~p--d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 511 (830)
-.-.. +.+.+.......++ +...+..+..++.. +..++|...+....... |+......+...+.+.|++++
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHH
Confidence 22111 22333333222123 33344444444444 78888999777777654 454444445556679999999
Q ss_pred HHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhh
Q 047408 512 ARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYE 588 (830)
Q Consensus 512 A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~ 588 (830)
|...|+++. .++...|..+...+.+.|+.++|.+.|++.++. .|+... +..+.......|++++|...++...
T Consensus 528 Ai~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL-- 603 (987)
T PRK09782 528 ALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL-- 603 (987)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH--
Confidence 999999765 345566778888899999999999999999985 455543 3344455667799999999999987
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 589 CNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 589 ~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
.+.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.++|+..++++++++|+++..+..
T Consensus 604 -~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 604 -NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred -HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 56688889999999999999999999999987 56675 5788888889999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|...+++..+
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999888765
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=1.5e-17 Score=197.09 Aligned_cols=547 Identities=13% Similarity=0.039 Sum_probs=349.8
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCCChhHHHH
Q 047408 108 DLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK---VFIWNLLMHEYSKTGNFKESLY 184 (830)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~ 184 (830)
..|++++|...+...++. .|++..++..|...|.+.|+.++|+..+++....+ ...+..+ ..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 347888888888888874 46667788888888888888888888888765433 3333333 222 88888899
Q ss_pred HHHHHHHcCCCCCcc-cHHHHHHH--------HHhcCCCCCHHHHHHHHhhCCCC--Ccch-HHHHHHHHHhCCChhHHH
Q 047408 185 LFKKMQSLGIAADSY-TFSCVLKC--------LAVVGNSRRVKDAHKLFDELSDR--DVVS-WNCMISGYIANGVAEKGL 252 (830)
Q Consensus 185 l~~~m~~~g~~p~~~-t~~~ll~~--------~~~~g~~~~~~~A~~lf~~m~~~--~~~~-~n~li~~~~~~g~~~~A~ 252 (830)
+++++... .|+.. .+..+... |.+.+ ....+++ .+...+ +..+ .-.+...|.+.|++++|+
T Consensus 130 ~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 130 TVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99998875 34432 23222222 44332 3444554 222223 3333 344488999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC-
Q 047408 253 EVFKEMLNLGFNVDLATMVTVLSGCAN-CGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE- 330 (830)
Q Consensus 253 ~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~- 330 (830)
+++.+|.+.+... ..-...+-.++.. .++ +.+..++. ..+..++.+..++.+.|.+.|+.++|.+++++++.
T Consensus 203 ~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999875333 2224444445555 355 55555533 24447888889999999999999999999999864
Q ss_pred ----CCeehHHHH------------------------------HHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH
Q 047408 331 ----RSVVSWTSM------------------------------IAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH 376 (830)
Q Consensus 331 ----~d~~~~~~l------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 376 (830)
|+..+|--. +.-+.++++++.+.++ ..+.|.......-..
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEMLEERYA 350 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchHHHHHHh
Confidence 222232222 2333444444433322 123444432211111
Q ss_pred HhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC--CchhHHHHH-HHHHHHHHHHhC
Q 047408 377 ACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK--DIVSWNTMI-GALDLFVAMLQN 453 (830)
Q Consensus 377 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--~~~~~n~~i-~al~~f~~m~~~ 453 (830)
+....+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|+..... +...--+++ ....++ ...
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~ 426 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL---ESH 426 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH---HhC
Confidence 2223355555555565555542 224444444555567888889999888876542 111000111 000000 001
Q ss_pred CCCCccccccch-h------hhcchhhHHHHHHHHHHHHHh-CC-CC--chhHHhHHHHHHHhcCCHHHHHHHhhhCCCC
Q 047408 454 FEPDGVTMACIL-P------ACASLAALERGREIHGYILRH-GI-SA--DRNVANAIVDMYVKCGVLVLARSLFDMIPAK 522 (830)
Q Consensus 454 ~~pd~~t~~~ll-~------a~~~~~~~~~a~~i~~~~~~~-g~-~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 522 (830)
+.++..+-...+ . -|.-.|....+......+.+. +. ++ +...+..+...+.. |+.++|...|.+....
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 111111111000 0 022233333333333333332 22 34 67788888888887 8999999988776533
Q ss_pred ChhhHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHH
Q 047408 523 DLISWTIMIAGY--GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYA 599 (830)
Q Consensus 523 d~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 599 (830)
.+..|+.+..++ .+.|++++|+..|+++.. ..|+...+..+..++.+.|+.++|.++++...+. .|+ ...+.
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~ 580 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYW 580 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHH
Confidence 333555554454 589999999999999866 3566666677778889999999999999998743 344 33344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
.+...+.+.|++++|...+++. ...|+...|..+...+...|+.++|+..++++++++|+++..+..++.++...|+++
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 4445555679999999999987 677888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
+|...++...+
T Consensus 661 eAi~~l~~AL~ 671 (987)
T PRK09782 661 QSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=6.6e-18 Score=176.91 Aligned_cols=433 Identities=14% Similarity=0.121 Sum_probs=330.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhh
Q 047408 235 WNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLS-GCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYS 313 (830)
Q Consensus 235 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~ 313 (830)
...|..-..+.|++++|++.-...-++ .|+..--..++. .+.+...++...+--...++.. +.-...|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 344555566789999998876544332 222222222222 2344444444333333333322 223456677888899
Q ss_pred cCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH-HhhccCcchhhhh
Q 047408 314 KCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH-ACACDGLLEIGKD 389 (830)
Q Consensus 314 k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~ 389 (830)
..|++++|..+++.+.+ ..+..|-.+..++...|+.+.|.+.|.+.++ +.|+.+...+-+. .....|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998866 3567899999999999999999999998877 4677665544433 3344688899999
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH-------------HHHHHHHHHhCCCC
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG-------------ALDLFVAMLQNFEP 456 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~-------------al~~f~~m~~~~~p 456 (830)
.+.+.++.. +.-..+|+.|...+-..|++..|+.-|++...-|.---.+-|. |+..+.+.....+.
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 888888765 2335678888888999999999999999887665533333332 55555555555455
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAG 533 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~ 533 (830)
..+.+..+...|...|.++.|...+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+.. ..-..+.|.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 56778888888899999999999999988754 2336789999999999999999999998765 2345688889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~ 611 (830)
|...|..++|..+|....+ +.|.-. .++.|.+.+-+.|.+++|+..+++.. .|.|+ ...|+.|...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999988 778765 68899999999999999999999877 78898 68899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 612 SEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
+.|.+.+.+. .+.|. +...+.|.+.++..|++.+|+..++.+++++||.+.+|..|...+.---.|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999886 67776 57889999999999999999999999999999999999888877766667766
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=9.1e-18 Score=185.45 Aligned_cols=291 Identities=16% Similarity=0.145 Sum_probs=191.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCC---chhhHHHHHHHHHhcCC
Q 047408 343 YAREGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQS---SLYVSNALMDMYAKCGS 418 (830)
Q Consensus 343 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~k~g~ 418 (830)
+...|++++|+..|+++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..+ ...++..|...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555555543 222 2234444444455555555555555544432111 12456778888888888
Q ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhH
Q 047408 419 MADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANA 498 (830)
Q Consensus 419 ~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 498 (830)
+++|..+|+++.+.+ +.+..+++.
T Consensus 123 ~~~A~~~~~~~l~~~--------------------------------------------------------~~~~~~~~~ 146 (389)
T PRK11788 123 LDRAEELFLQLVDEG--------------------------------------------------------DFAEGALQQ 146 (389)
T ss_pred HHHHHHHHHHHHcCC--------------------------------------------------------cchHHHHHH
Confidence 888888888775432 123344555
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHH
Q 047408 499 IVDMYVKCGVLVLARSLFDMIPAKD--------LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYAC 569 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~~~d--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~ 569 (830)
++.+|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|++.|+++.+. .|+.. .+..+...+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHH
Confidence 6666666666666666666553211 113455666777778888888888887763 45433 566666777
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a 646 (830)
.+.|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|
T Consensus 225 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHH
Confidence 7888888888888877632 343 355677888888888888888888886 4567766678888888999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhh---hcCHHHHHHHHHHHHhCCCcCCCc
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAE---AEKWEEVKKLREKISRRGLKKNPG 697 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~---~g~~~~A~~~~~~m~~~g~~~~~~ 697 (830)
..+++++++..|++.... .+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 302 ~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 302 QALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999999999876443 33444332 568999999999999999999986
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=8.2e-17 Score=168.80 Aligned_cols=371 Identities=14% Similarity=0.188 Sum_probs=295.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCch-HHHHHH
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVD-LATMVTVLSGCANCGALMFGRAVHAFALKACFSKEIS-FNNTLL 309 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~Li 309 (830)
..+|..+...+-..|+.++|+.+++.|.+. +|+ ...|..+-.++...|+.+.+.+.+...++.. |+.+ +.+-+-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 457777888888888888888888888764 554 4567777777888888888888887777643 3332 223444
Q ss_pred HHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcch
Q 047408 310 DMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLE 385 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~ 385 (830)
+..-..|++++|..-+.+..+ | -.+.|+.+...+-.+|+..+|+..|++... +.|+ ...|..|-..+...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence 555567889998888876544 4 357899999999999999999999999876 4565 345667777777777788
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-ccccccc
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-GVTMACI 464 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-~~t~~~l 464 (830)
.|...+....... +....++..|...|-..|.+|-|+..+++..+.+ |+ ...|+.+
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~----------------------P~F~~Ay~Nl 326 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ----------------------PNFPDAYNNL 326 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC----------------------CCchHHHhHH
Confidence 8777777666543 3345667778888999999999999998876653 33 4578889
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KD-LISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~ 541 (830)
..|+-..|++.+|.+.+...+... +......+.|...|...|.+++|..+|....+ |+ ....|.|...|-++|+.+
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 999999999999999999988865 34466778899999999999999999987653 32 357899999999999999
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 542 DAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
+|+..|++.++ ++|+.. .|+.+...+-..|+++.|.+.+.... .+.|. .+..+.|..+|-.+|++.+|++-++
T Consensus 406 ~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 406 DAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 99999999998 899976 79999999999999999999998877 67887 7888999999999999999999999
Q ss_pred hC-CCCCCH-HHHHHHHHHH
Q 047408 620 MM-PVAPDA-TIWGSLLCGC 637 (830)
Q Consensus 620 ~m-~~~p~~-~~~~~ll~~~ 637 (830)
+. .++||. ..+-.|+-+.
T Consensus 481 ~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHccCCCCchhhhHHHHHH
Confidence 86 778873 5666666554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=1.3e-17 Score=184.19 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=192.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---chHHHHHHHHhhcCC
Q 047408 241 GYIANGVAEKGLEVFKEMLNLGFNVD-LATMVTVLSGCANCGALMFGRAVHAFALKACFSKE---ISFNNTLLDMYSKCG 316 (830)
Q Consensus 241 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~---~~~~~~Li~~y~k~g 316 (830)
.+...|++++|++.|.++.+. .|+ ..++..+...+...|+++.+..++..+++.+..++ ..++..|...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 345566777777777777654 333 33555555666666666666666666665432111 235677888899999
Q ss_pred ChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc----hHHHHHHHhhccCcchhhhh
Q 047408 317 DLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVY----AITSILHACACDGLLEIGKD 389 (830)
Q Consensus 317 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~ 389 (830)
++++|.++|+++.+ .+..+++.++..|.+.|++++|++.|+.+.+.+..++.. .+..+...+...|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999998865 456688889999999999999999999988765333221 23445556667788888888
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhc
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACA 469 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~ 469 (830)
.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++...+. .....++..+..++.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------------------~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--------------------EYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--------------------hhHHHHHHHHHHHHH
Confidence 888877654 33455667777888888888888888777654321 011223444555556
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHh---cCChHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGM---HGFGCDAI 544 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~---~g~~~~A~ 544 (830)
..|+.++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. +|+.++++
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence 6666666666666655543 333444556666666666666666665543 3555556655555443 44566666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHccCCH
Q 047408 545 ATFNDMRQAGIEPDEVSFISVLYACSHSGLV 575 (830)
Q Consensus 545 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~ 575 (830)
.+|++|.+.+++|+.. .+|++.|.+
T Consensus 339 ~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 339 LLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 6666666655555554 235555544
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=8.1e-16 Score=179.26 Aligned_cols=417 Identities=11% Similarity=0.014 Sum_probs=273.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhc
Q 047408 235 WNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSK 314 (830)
Q Consensus 235 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k 314 (830)
+..+...|.+.|++++|++.|.+... +.|+...|..+-.++...|+++.+...+..+++.. +.+...+..+...|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44456677788888888888888765 45677777777777777888888888777777653 2344566677778888
Q ss_pred CCChHHHHHHHhhcCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHH
Q 047408 315 CGDLDGAIRVFEKMGERS---VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVH 391 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 391 (830)
.|++++|..-|......+ ......++..+.. ..+.....+..+. -.++...+..+ ..+...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFV-GNYLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHH-HHHHHHccCCcchhhh
Confidence 888888887765543211 1111111111111 1222222222222 11111222211 1121111111111111
Q ss_pred HHHHhhcCCCchhhHHHHHHHH------HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCC-Cccccccc
Q 047408 392 DYIKENDMQSSLYVSNALMDMY------AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEP-DGVTMACI 464 (830)
Q Consensus 392 ~~~~~~g~~~~~~~~~~Li~~y------~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~p-d~~t~~~l 464 (830)
.... ..+......++..+ ...+++++|.+.|+.....+.. .| +...+..+
T Consensus 281 ~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~-------------------~~~~a~a~~~l 337 (615)
T TIGR00990 281 EDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL-------------------GEKEAIALNLR 337 (615)
T ss_pred hccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC-------------------ChhhHHHHHHH
Confidence 1100 00111111111111 2346788888888876654210 12 22234444
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~ 541 (830)
...+...|++++|...+..+++.. +.+...+..+...|...|++++|...|++.. ..+...|..+...|...|+++
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455567788888888888887753 3346677888899999999999999998764 346788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 542 DAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
+|+..|++.++ +.|+.. .+..+..++.+.|++++|...|+.... ..|+ ...|..+..+|...|++++|++.++
T Consensus 417 ~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 417 QAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred HHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998 567654 566777888899999999999999874 3454 6788899999999999999999998
Q ss_pred hC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 620 MM-PVAPDA-T-------IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 620 ~m-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+. .+.|+. . .++..+..+...|++++|+..++++++++|++...+..|+.+|...|++++|.+.++...+
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 85 444431 1 1222222334469999999999999999999999999999999999999999999888764
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=7e-15 Score=174.55 Aligned_cols=369 Identities=11% Similarity=0.035 Sum_probs=251.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhc
Q 047408 304 FNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACAC 380 (830)
Q Consensus 304 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 380 (830)
.+..+...+.+.|++++|.++|++... .+...+..+...+...|++++|+..+++..+. .|+...+..+..++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345666666777777777777776432 23445666667777777777777777777664 3333225555556677
Q ss_pred cCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccc
Q 047408 381 DGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVT 460 (830)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t 460 (830)
.|+.++|...+..+++.. +.+..++..+...+.+.|..++|.+.++.... +.. +..-+........ .
T Consensus 129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~-~~~~l~~~~~~~~----------~ 195 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA-EKRDLEADAAAEL----------V 195 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH-HHHHHHHHHHHHH----------H
Confidence 777777777777777765 33455666678888888888889888887765 211 1000000000000 0
Q ss_pred cccchhhhcchhhH---HHHHHHHHHHHHh-CCCCchh--HHhHH---HHHHHhcCCHHHHHHHhhhCCCCC--hhh--H
Q 047408 461 MACILPACASLAAL---ERGREIHGYILRH-GISADRN--VANAI---VDMYVKCGVLVLARSLFDMIPAKD--LIS--W 527 (830)
Q Consensus 461 ~~~ll~a~~~~~~~---~~a~~i~~~~~~~-g~~~~~~--~~~~L---i~~y~k~g~~~~A~~~f~~m~~~d--~~~--~ 527 (830)
-..+.......+.+ +.|.+.++.+++. .-.|+.. ...+. +..+...|++++|...|+.+...+ ... -
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~ 275 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ 275 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH
Confidence 00111111223333 6777777777754 2223221 11111 223456799999999999987432 111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHccCCHHHHHHHHHHhHhhcC----------CC
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-----VSFISVLYACSHSGLVDEGWRFFNMMRYECN----------IE 592 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~ 592 (830)
-.+...|...|++++|+..|+++.+. .|.. .....+..++...|++++|.++++.+..... -.
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 22567899999999999999998864 3332 3456666788999999999999999874321 11
Q ss_pred CC---cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 593 PK---LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 593 p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
|+ ...+..+..++...|++++|++.++++ ...| +...|..+...+...|+.++|+..++++++++|+++..+..+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 22 224567788999999999999999997 4445 468899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.++...|+|++|..+++.+.+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=3.7e-14 Score=165.35 Aligned_cols=442 Identities=12% Similarity=0.052 Sum_probs=265.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHH
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISG 241 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~ 241 (830)
.+..+...|.+.|++++|+..|++... +.|+...|..+-.++...| +.++|...+++.. +.+...|..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~---~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 355667788889999999999998775 4577777777777888777 4777777776644 3456678888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHH
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGA 321 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 321 (830)
|...|++++|+.-|......+-..+. ....++..... ..+.......++.. +.+...+..+ ..|........+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcc
Confidence 99999999998888766543211111 11111111000 01111111111111 1111111111 111111111111
Q ss_pred HHHHhhcCCCCe---ehHHHHHHHH---HhcCChhHHHHHHHHHHHcC-CCCCcchHHHHHHHhhccCcchhhhhHHHHH
Q 047408 322 IRVFEKMGERSV---VSWTSMIAGY---AREGVFDGAIRLFRGMVREG-IEPDVYAITSILHACACDGLLEIGKDVHDYI 394 (830)
Q Consensus 322 ~~~f~~m~~~d~---~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 394 (830)
..-++...+-+. ..+..+...+ ...+.+++|++.|++....+ ..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~----------------------------- 327 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG----------------------------- 327 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC-----------------------------
Confidence 111111111000 0010000000 11234444555444444332 11
Q ss_pred HhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-ccccccchhhhcchhh
Q 047408 395 KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-GVTMACILPACASLAA 473 (830)
Q Consensus 395 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-~~t~~~ll~a~~~~~~ 473 (830)
+.+...++.+...|...|++++|...|+...+.+ |+ ...+..+...+...|+
T Consensus 328 -----~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~----------------------P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 328 -----EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD----------------------PRVTQSYIKRASMNLELGD 380 (615)
T ss_pred -----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------CCcHHHHHHHHHHHHHCCC
Confidence 1223445555566666666666666666554432 22 2234444445555666
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDM 550 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 550 (830)
+++|...+..+++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666666543 4467788888999999999999999998765 335677888888999999999999999998
Q ss_pred HHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc--ch------HHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 551 RQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL--EH------YACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 551 ~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~------y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
++ ..|+. ..+..+..++...|++++|++.|+... .+.|+. .+ ++.....+...|++++|.+++++.
T Consensus 460 l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 460 KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 87 45664 467788888999999999999999876 344431 11 122223344579999999999885
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 622 -PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 622 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.+.|+ ...|..+...+...|++++|...+++++++.+..... ..+..|.+|.++....+
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQ 595 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHH
Confidence 66675 4678999999999999999999999999998764332 23335556666655444
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=5.1e-15 Score=172.00 Aligned_cols=324 Identities=10% Similarity=-0.003 Sum_probs=199.4
Q ss_pred HHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCc
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGL 383 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 383 (830)
++-...+.|+.++|..+++.... .+...+..++.+....|++++|+..|+++... .|+. ..+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Confidence 34455566777777777766543 23344555556666677777777777777653 3443 344555556667777
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
++.|...+..+++.. +.+..++..+...|...|+.++|...++.+...+ |+......
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----------------------P~~~~a~~ 182 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV----------------------PPRGDMIA 182 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------------CCCHHHHH
Confidence 777777777776653 3345566667777777777777777666543321 22222221
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG 540 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~ 540 (830)
.+..+...|++++|...+..+++....++......+...|.+.|+.++|...|++.. ..+...++.+...|.+.|++
T Consensus 183 ~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 183 TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Confidence 223355667777777777766655322333444445566777777777777777654 23455666677777777777
Q ss_pred HH----HHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 047408 541 CD----AIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEA 614 (830)
Q Consensus 541 ~~----A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA 614 (830)
++ |+..|++..+ +.|+.. .+..+...+...|++++|..+++.... +.|+ ...+..+..+|.+.|++++|
T Consensus 263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 64 6777777776 455544 566666677777777777777776653 3443 34455566777777777777
Q ss_pred HHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 615 YRFIEMM-PVAPDATIWG-SLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 615 ~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 7777665 3455543333 334556677777777777777777777653
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=5e-15 Score=172.03 Aligned_cols=351 Identities=8% Similarity=-0.050 Sum_probs=253.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHH
Q 047408 268 ATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYA 344 (830)
Q Consensus 268 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~ 344 (830)
.-...++..+-+.|+++.+..+...++.....+....++ +.......|+.++|...|+++.. | +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345556777888889999988888888776555444433 44555668999999999988755 3 4567888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH
Q 047408 345 REGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE 423 (830)
Q Consensus 345 ~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 423 (830)
+.|++++|+..|++.... .|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+.+.|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 899999999999888764 455 4456667778888899999988888777665322 3333333 3477889999998
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHH
Q 047408 424 SVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMY 503 (830)
Q Consensus 424 ~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 503 (830)
..++.+...+. .++......+..++...|+.++|.+.+..+++.. +.+..++..+..+|
T Consensus 198 ~~~~~~l~~~~--------------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l 256 (656)
T PRK15174 198 DLARALLPFFA--------------------LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAY 256 (656)
T ss_pred HHHHHHHhcCC--------------------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 88887655432 1233344444566778888999998888888765 45677788888889
Q ss_pred HhcCCHHH----HHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCH
Q 047408 504 VKCGVLVL----ARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLV 575 (830)
Q Consensus 504 ~k~g~~~~----A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~ 575 (830)
.+.|++++ |...|++.. ..+...|..+...+...|++++|+..+++..+ ..|+.. ....+..++...|++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCH
Confidence 99998885 788888764 33566888888888999999999999998887 466654 455666778888999
Q ss_pred HHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 576 DEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 576 ~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++|...|+.+.. ..|+. ..+..+..+|...|+.++|.+.+++. ...|+.. ..++++|...+.++
T Consensus 335 ~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~ 400 (656)
T PRK15174 335 TAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQ 400 (656)
T ss_pred HHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHH
Confidence 999998888764 34543 23444567788899999999988876 4555542 34566777777777
Q ss_pred hccCCCC
Q 047408 654 FELEPDN 660 (830)
Q Consensus 654 ~~l~p~~ 660 (830)
++.-+..
T Consensus 401 ~~~~~~~ 407 (656)
T PRK15174 401 ISAVNLP 407 (656)
T ss_pred HHhcCCc
Confidence 7655443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.7e-13 Score=159.62 Aligned_cols=432 Identities=12% Similarity=0.060 Sum_probs=274.1
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChH
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDL--ATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLD 319 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 319 (830)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|.......+ ..-........++...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45667777777777776653 3443 122 55555566677777776666665 101111222223345677777777
Q ss_pred HHHHHHhhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHh
Q 047408 320 GAIRVFEKMGER---SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE 396 (830)
Q Consensus 320 ~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 396 (830)
+|.++|+++.+. |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777777552 3445556667777777777777777777654 45544553333333334444447777777777
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH-HHHHHHHHHhCC-CCCccccccchhhhcchhhH
Q 047408 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG-ALDLFVAMLQNF-EPDGVTMACILPACASLAAL 474 (830)
Q Consensus 397 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~-al~~f~~m~~~~-~pd~~t~~~ll~a~~~~~~~ 474 (830)
.. +.+...+..++....+.|-...|.++..+-+. ..+-..... -...+.++.+.. .|+.. - -.+-.-+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l~~~~~a~~vr~a~~~~~~-~------~~r~~~~ 267 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQLERDAAAEQVRMAVLPTRS-E------TERFDIA 267 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHhhccccccc-c------hhhHHHH
Confidence 65 45566677777778888888888777766542 111000000 001111111111 11100 0 0011123
Q ss_pred HHHHHHHHHHHHh-CC-CCch-hHHhHH---HHHHHhcCCHHHHHHHhhhCCCC--Chh--hHHHHHHHHHhcCChHHHH
Q 047408 475 ERGREIHGYILRH-GI-SADR-NVANAI---VDMYVKCGVLVLARSLFDMIPAK--DLI--SWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 475 ~~a~~i~~~~~~~-g~-~~~~-~~~~~L---i~~y~k~g~~~~A~~~f~~m~~~--d~~--~~~~li~~~~~~g~~~~A~ 544 (830)
+.+..-.+.+... +- ++.. ....+. +-++.+.|+..++.+.|+.++.. .+. .--++..+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3344444443331 11 2221 223333 34567889999999999999843 233 4456788999999999999
Q ss_pred HHHHHHHHcCC----CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcC----------CCCC---cchHHHHHHHHH
Q 047408 545 ATFNDMRQAGI----EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECN----------IEPK---LEHYACMVDLLS 606 (830)
Q Consensus 545 ~l~~~m~~~g~----~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~lv~~l~ 606 (830)
.+|++.....- .|+.. ....|..|+..++++++|..+++.+.+... -.|+ ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999876431 12222 356788999999999999999999875211 0132 234556788889
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 607 RTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 607 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
..|++.+|++.++++ ...| |..++..+...++..|+...|+..++.+..++|++......++..+...|+|++|.++.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999998 3445 67888899999999999999999999999999999999999999999999999998887
Q ss_pred HHHHh
Q 047408 685 EKISR 689 (830)
Q Consensus 685 ~~m~~ 689 (830)
+...+
T Consensus 508 ~~l~~ 512 (822)
T PRK14574 508 DDVIS 512 (822)
T ss_pred HHHHh
Confidence 66654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1e-12 Score=146.11 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=104.7
Q ss_pred CCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 047408 507 GVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 507 g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
+..++|.++|.++. .+|...=|-+...++..|++.+|..+|.+.++... -+..+|..+...|...|.+-.|++.|+
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 34566777777554 34555666677777777888888888887777532 334456777777777788888888887
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 584 MMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA--TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 584 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
...+++.-.-+.....+|..++.++|.+.+|.+..... ...|.. +.+|-.+ ...+..+.++..++.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~----------v~kkla~s~lr~~k~- 773 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL----------VLKKLAESILRLEKR- 773 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH----------HHHHHHHHHHhcccc-
Confidence 77766665556777778888888888888877765443 334432 2222221 111223333333331
Q ss_pred cchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 661 TGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.+=.+....+..++|.++|..|...+-+
T Consensus 774 -----t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 774 -----TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2233455566777777777777764443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=5e-14 Score=167.29 Aligned_cols=363 Identities=12% Similarity=0.025 Sum_probs=224.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcC
Q 047408 271 VTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREG 347 (830)
Q Consensus 271 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g 347 (830)
..+..++...|+++.|..++..+++.. +.+......+...+.+.|+.++|...+++... | +.. |..+...+...|
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 333333344444444444444433321 12233334555555666666666666665533 2 233 555555666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCcch-HHHHHHHhhccCcchhhhhHHHHHHhhcCCCch------hhHHHHHHHHH-----h
Q 047408 348 VFDGAIRLFRGMVREGIEPDVYA-ITSILHACACDGLLEIGKDVHDYIKENDMQSSL------YVSNALMDMYA-----K 415 (830)
Q Consensus 348 ~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~Li~~y~-----k 415 (830)
+.++|+..++++.+. .|+... +..+..++...+..+.|.+.++.+.+ .|+. .....++..+. .
T Consensus 131 ~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 131 RHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 666666666666553 343322 23333444455555555555544332 1110 01111222221 1
Q ss_pred cCCh---HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcc-cccc----chhhhcchhhHHHHHHHHHHHHHh
Q 047408 416 CGSM---ADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGV-TMAC----ILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 416 ~g~~---~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
.+++ ++|++.++.+.... ...|+.. .+.. .+.++...++.++|...+..+.+.
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~-------------------~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 206 KERYAIADRALAQYDALEALW-------------------HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhc-------------------ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 2223 45555555543210 0023321 1111 133455678999999999999887
Q ss_pred CCC-CchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q 047408 488 GIS-ADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD-------LISWTIMIAGYGMHGFGCDAIATFNDMRQAG----- 554 (830)
Q Consensus 488 g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 554 (830)
+-+ |+ .....+...|...|++++|...|+++...+ ...+..+..++...|++++|+++++++....
T Consensus 267 ~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 267 GQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred CCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 632 22 122335778999999999999999875332 2345667778899999999999999998742
Q ss_pred ------CCCChh---HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 047408 555 ------IEPDEV---SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PV 623 (830)
Q Consensus 555 ------~~Pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 623 (830)
-.|+.. .+..+...+...|+.++|++.++.+... .| +...+..+..++.+.|+.++|++.+++. ..
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 113321 3445567788999999999999998743 45 4678889999999999999999999987 56
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 624 APD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 624 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.|| ...+..+.......|++++|+.+++++++..|+++..
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 776 5677777778889999999999999999999999754
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5.8e-13 Score=147.95 Aligned_cols=580 Identities=16% Similarity=0.089 Sum_probs=349.6
Q ss_pred CChHHHHHHHHHhhcCCC--Chh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHH--HhCCChHHH
Q 047408 77 GNLEKAMEVLYSSEKSKI--DTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMF--VTCGDLKEG 151 (830)
Q Consensus 77 g~~~~A~~~~~~m~~~~~--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y--~~~g~~~~A 151 (830)
..+..|..+|...-.... ++. .+...........+.+.|.+.|..+++.. |+|. ...|..+. ...|++..|
T Consensus 108 e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s--p~Ni--l~LlGkA~i~ynkkdY~~a 183 (1018)
T KOG2002|consen 108 ELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS--PDNI--LALLGKARIAYNKKDYRGA 183 (1018)
T ss_pred HHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC--Ccch--HHHHHHHHHHhccccHHHH
Confidence 346677777765543322 111 22221111222223577777777777754 3322 22233333 234678888
Q ss_pred HHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH-HhcCCCCCHHHHHHHH
Q 047408 152 RRVFNKIDN------GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCL-AVVGNSRRVKDAHKLF 224 (830)
Q Consensus 152 ~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~~~~A~~lf 224 (830)
..+|..... +|+. -.+-.++.+.|+.+.|+..|.+..+. .|+.+.-...|.-+ ....+.+....+..++
T Consensus 184 l~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll 259 (1018)
T KOG2002|consen 184 LKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLL 259 (1018)
T ss_pred HHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 888887331 2221 12224566888888888888887763 34222111111111 1223333556666666
Q ss_pred hhCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 047408 225 DELS---DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN--VDLATMVTVLSGCANCGALMFGRAVHAFALKACFS 299 (830)
Q Consensus 225 ~~m~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 299 (830)
...- ..|++..|.|.+-|.-.|++..+..+...+...... .-...|-.+-+++-..|+++.|...+....+..-.
T Consensus 260 ~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 260 QRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 5543 468899999999999999999999999888765311 12335677788888999999999999888876544
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCcchHH
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREG----VFDGAIRLFRGMVREGIEPDVYAIT 372 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~ 372 (830)
..+.-+-.|..+|.+.|+++.|...|+.+.. | +..+...+...|+..+ ..+.|..++.+..+.- ..|...|.
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l 418 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWL 418 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 4344455788999999999999999999865 3 3455666666677665 3455665555554431 23444554
Q ss_pred HHHHHhhccCcchhhhhHHHHH----HhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHHHHHHHHHH
Q 047408 373 SILHACACDGLLEIGKDVHDYI----KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK-DIVSWNTMIGALDLF 447 (830)
Q Consensus 373 ~ll~a~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-~~~~~n~~i~al~~f 447 (830)
.+-..+- .++.......+..+ ...+-.+-+.+.|.+...+...|.+++|...|+....+ ..
T Consensus 419 ~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~------------- 484 (1018)
T KOG2002|consen 419 ELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE------------- 484 (1018)
T ss_pred HHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh-------------
Confidence 4444433 34444445555443 34555577789999999999999999999999876543 00
Q ss_pred HHHHhCCCCCc-----ccccc-chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-
Q 047408 448 VAMLQNFEPDG-----VTMAC-ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP- 520 (830)
Q Consensus 448 ~~m~~~~~pd~-----~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~- 520 (830)
.| .+|. +|..- +....-..++.+.|.+.+..+++.. +.-+..|--|.-|--..+...+|...+....
T Consensus 485 -~~----n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 485 -VA----NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred -hc----CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 00 1222 12222 2222335567777777777777653 1112222222222222345566777776554
Q ss_pred --CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHc------------cCCHHHHHHHHHHh
Q 047408 521 --AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA-GIEPDEVSFISVLYACSH------------SGLVDEGWRFFNMM 585 (830)
Q Consensus 521 --~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~m 585 (830)
..|+..|+-+...|.....+..|-+-|....+. -..+|..+..+|.+.|.. .+..+.|+++|...
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 446666776666777777777777766655542 123566666666665432 23456666666665
Q ss_pred HhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCC
Q 047408 586 RYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMP--VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFEL--EPDN 660 (830)
Q Consensus 586 ~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~ 660 (830)
. ...| +...-+-+.-.|+..|++.+|..+|.+.. ...+..+|-.+...|...|++-.|.++|+..+.. .-++
T Consensus 639 L---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 639 L---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred H---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 5 2334 45555666777777788888887777762 2223456777777777778888888877776642 2345
Q ss_pred cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 661 TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+.....|+.++.+.|+|.+|.+......
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6667777788888888887777655544
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=2.9e-12 Score=149.33 Aligned_cols=434 Identities=10% Similarity=0.056 Sum_probs=284.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchH-HHH--HHHHHhCC
Q 047408 172 EYSKTGNFKESLYLFKKMQSLGIAADS--YTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSW-NCM--ISGYIANG 246 (830)
Q Consensus 172 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~-n~l--i~~~~~~g 246 (830)
...+.|+++.|+..|++..+. .|+. ..+ .++..+...| ..++|+..+++...|+...+ ..+ ...|...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G---~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAG---RDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcC---CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 345667777777777766653 2332 122 5555555555 46666666666655433333 222 34667778
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHh
Q 047408 247 VAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFE 326 (830)
Q Consensus 247 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 326 (830)
++++|+++|+++.+. .|+ +..++..|+..|...++.++|++.++
T Consensus 117 dyd~Aiely~kaL~~--dP~----------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 117 RWDQALALWQSSLKK--DPT----------------------------------NPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred CHHHHHHHHHHHHhh--CCC----------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 888888888888765 222 23334556677788888888888888
Q ss_pred hcCCCCeehHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCch
Q 047408 327 KMGERSVVSWTSMIAGYAR--EGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSL 403 (830)
Q Consensus 327 ~m~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 403 (830)
++...+......+..+|.. .++..+|++.++++.+. .|+ ...+..+..+..+.|-...|.++...- |+.
T Consensus 161 ~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~ 232 (822)
T PRK14574 161 ELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNL 232 (822)
T ss_pred HhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccc
Confidence 8876443332234444444 45555688888888875 454 444566677777777777776655542 222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhcC--CCCCc-hhHHHHHHHHHHHHHHHhCC--CCCc-ccc----ccchhhhcchhh
Q 047408 404 YVSNALMDMYAKCGSMADAESVFNQM--PVKDI-VSWNTMIGALDLFVAMLQNF--EPDG-VTM----ACILPACASLAA 473 (830)
Q Consensus 404 ~~~~~Li~~y~k~g~~~~A~~~f~~m--~~~~~-~~~n~~i~al~~f~~m~~~~--~pd~-~t~----~~ll~a~~~~~~ 473 (830)
++-.-+... +.+.|.+..+.- ..+.. -.+..+=.|+.-+..+...- .|.. .-| .--+-++...++
T Consensus 233 f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 233 VSAEHYRQL-----ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred cCHHHHHHH-----HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 211111110 011111111110 00000 00111111455555554422 2322 211 223556778889
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---------ChhhHHHHHHHHHhcCChHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---------DLISWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~A~ 544 (830)
..++.+.++.+...|.+.-..+--++.++|...+++++|..+|..+... ++.....|.-+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999887767778899999999999999999999987432 2333577899999999999999
Q ss_pred HHHHHHHHcCC-------------CCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 545 ATFNDMRQAGI-------------EPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 545 ~l~~~m~~~g~-------------~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
.+++++.+.-. .||-.. +..+...+...|++.+|++.++.+. ...| |......+.+++...|
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS---STAPANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcC
Confidence 99999997311 123333 3344567889999999999999997 4456 5788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 610 NLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+..+|++.++.. ...|+ ..+...+..+....+++++|+.+.+++++..|+++..
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999876 46775 4566677777888899999999999999999999754
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=5.1e-10 Score=119.33 Aligned_cols=550 Identities=12% Similarity=0.068 Sum_probs=413.5
Q ss_pred cCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHH
Q 047408 109 LKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKESLYL 185 (830)
Q Consensus 109 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 185 (830)
....+.|+.+.+..++.- |.++.+|-.-...- .+...-.+|+.+.. ..++..|-+. ......+.|.-+
T Consensus 328 Lhp~d~aK~vvA~Avr~~--P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~daril 398 (913)
T KOG0495|consen 328 LHPPDVAKTVVANAVRFL--PTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARIL 398 (913)
T ss_pred cCChHHHHHHHHHHHHhC--CCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHH
Confidence 344555666666665532 33233332222211 12222233443322 2345566543 345666778888
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChhHHHHHHHH----H
Q 047408 186 FKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISGYIANGVAEKGLEVFKE----M 258 (830)
Q Consensus 186 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~----m 258 (830)
+.+..+. -|. -.-|..++++.. .++.|.+++.+.. +.+...|-+-...--++|+.+...+++.+ +
T Consensus 399 L~rAvec--cp~---s~dLwlAlarLe---tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L 470 (913)
T KOG0495|consen 399 LERAVEC--CPQ---SMDLWLALARLE---TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSEL 470 (913)
T ss_pred HHHHHHh--ccc---hHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8887763 122 223445556555 4778888876654 46888998888888899999988888765 4
Q ss_pred HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC--chHHHHHHHHhhcCCChHHHHHHHhhcCC---CCe
Q 047408 259 LNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKE--ISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSV 333 (830)
Q Consensus 259 ~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~ 333 (830)
...|+..|...|..=..+|-..|..-....|..-++..|++.. -.+++.-.+.+.+.+.++-|+.+|....+ .+.
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~ 550 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK 550 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh
Confidence 5679999999998888899999999999999999988887653 35677778889999999999999987765 366
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHH
Q 047408 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMY 413 (830)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 413 (830)
..|...+..--..|..++-..+|++.... ++-....+....+..-..|++..|+.++..+.+.. +.+..+|-+-+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHh
Confidence 77888777777789999999999999875 33344445555556667899999999999999886 34778899999999
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
....+++.|+.+|.+.... .|+...|.--+.---.++..++|+++.+..++. ++.-.
T Consensus 629 ~en~e~eraR~llakar~~----------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~ 685 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI----------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFH 685 (913)
T ss_pred hccccHHHHHHHHHHHhcc----------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchH
Confidence 9999999999999887654 355555555555555678899999999888875 34456
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIPA--K-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACS 570 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 570 (830)
..|-.+.+.|-+.++++.|++.|..-.+ | .+..|-.+...--+.|+.-+|..+|++.+..+ +-|..-|...+..=.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 7888899999999999999999987653 3 55689988888889999999999999998753 234457888899999
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 571 HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 571 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
+.|..++|..+.....++ .+.+...|..-|.+..+.++-..+.+.+++- +.|+.+.-+....+.....++.|+.-|
T Consensus 765 R~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888764 4445778888999999999988888877776 455666666777778888999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEE
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKV 707 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~ 707 (830)
++++..+|++..++..+-..+...|.-++-.++++.... -.|.-|-.|+.+...+
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhhH
Confidence 999999999999999999999999999999999987775 3455676786654433
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.4e-12 Score=129.23 Aligned_cols=361 Identities=16% Similarity=0.162 Sum_probs=241.1
Q ss_pred HHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCc
Q 047408 223 LFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEI 302 (830)
Q Consensus 223 lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~ 302 (830)
++-+..++...++..||.|+|+--..+.|.+++++-.....+.+..+|+.+|.+.+- ..++.+...|+...+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 444444556679999999999999999999999999999899999999999988653 3458999999999999999
Q ss_pred hHHHHHHHHhhcCCChHHHHHHH----hhcC----CCCeehHHHHHHHHHhcCChhH-HHHHHHHHHH----cCCCC---
Q 047408 303 SFNNTLLDMYSKCGDLDGAIRVF----EKMG----ERSVVSWTSMIAGYAREGVFDG-AIRLFRGMVR----EGIEP--- 366 (830)
Q Consensus 303 ~~~~~Li~~y~k~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p--- 366 (830)
+++|+++...++.|+++.|++.+ .+|+ +|...+|..+|..+++.+++.+ |..+..+.+. +.++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999999998876654 4453 4899999999999999988744 4555555443 22333
Q ss_pred -CcchHHHHHHHhhccCcchhhhhHHHHHHhhc----CCCc---hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHH
Q 047408 367 -DVYAITSILHACACDGLLEIGKDVHDYIKEND----MQSS---LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWN 438 (830)
Q Consensus 367 -d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n 438 (830)
|..-|.+.+..|.+..+.+.|.++++...... +.++ .+-|..+.+..+....++.-...++.|.-.-.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y---- 429 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY---- 429 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee----
Confidence 34557888999999999999999998775431 2222 23445677777777888888888777754322
Q ss_pred HHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhh
Q 047408 439 TMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDM 518 (830)
Q Consensus 439 ~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 518 (830)
-|+..+...+++|....+.++...+++..++..|...+....--+...+++..
T Consensus 430 ----------------~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------- 482 (625)
T KOG4422|consen 430 ----------------FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------- 482 (625)
T ss_pred ----------------cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-----------
Confidence 48888999999999999999999999999998885544433333322222221
Q ss_pred CCCCChhhHHHHHHHHHhc-CChHH-HHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 519 IPAKDLISWTIMIAGYGMH-GFGCD-AIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 519 m~~~d~~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
+.|+...-..+-...++. -++.+ ....-.+|.+....|.. .+.++.-+.+.|..++|+++|....+++.-.|...
T Consensus 483 -~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~--l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 483 -LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATS--LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhH--HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 112211111111111100 01111 11222344443343433 34444456677777888777777755545555555
Q ss_pred hHHHHH---HHHHhcCCHHHHHHHHHhC
Q 047408 597 HYACMV---DLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 597 ~y~~lv---~~l~r~g~~~eA~~~~~~m 621 (830)
..++|+ |.-.+......|...++-|
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555443 3333444555555555444
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=5.4e-11 Score=131.81 Aligned_cols=600 Identities=13% Similarity=0.123 Sum_probs=362.6
Q ss_pred HhcCChHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHH
Q 047408 74 CEVGNLEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGR 152 (830)
Q Consensus 74 ~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~ 152 (830)
...|+.++|.+++.+..+..|.. ..|.+|...+-..|+.+.+... .++...+.|.|...|-.+-....+.|.++.|+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 33499999999999999887765 4999999999999988876654 45566677877899999999999999999999
Q ss_pred HHHhcCCCCCcchHHH---HHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHH----HHHHHhcCCCCCHHHHHHHHh
Q 047408 153 RVFNKIDNGKVFIWNL---LMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCV----LKCLAVVGNSRRVKDAHKLFD 225 (830)
Q Consensus 153 ~~f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~~~~A~~lf~ 225 (830)
-.|.+..+.++.-|-. =+.-|-+.|+...|..-|.++.....+.|..-+-.+ ++.+...++ -+.|.+.++
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALE 304 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 9999876554443433 356788899999999999999876432232333333 444445553 477777777
Q ss_pred hCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----------------------hhHH----HHH
Q 047408 226 ELSD-----RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDL----------------------ATMV----TVL 274 (830)
Q Consensus 226 ~m~~-----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------------~t~~----~ll 274 (830)
.... -+...+|.++..|.+...++.|......+......+|. ..|. -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 6543 34567899999999999999999999988872222221 1111 122
Q ss_pred HHHhcCCChHHHHHHHHHHHHhC--CCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC----CCeehHHHHHHHHHhcCC
Q 047408 275 SGCANCGALMFGRAVHAFALKAC--FSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE----RSVVSWTSMIAGYAREGV 348 (830)
Q Consensus 275 ~a~~~~~~~~~~~~l~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~ 348 (830)
-+..+....+....+.....+.. +..++..+.-+.++|...|+..+|.++|..+.. .+...|--+...|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 22345556666666766676666 455677888999999999999999999999865 367789999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCcc-hHHHHHHHhhccCcchhhhhHHHHHH--------hhcCCCchhhHHHHHHHHHhcCCh
Q 047408 349 FDGAIRLFRGMVREGIEPDVY-AITSILHACACDGLLEIGKDVHDYIK--------ENDMQSSLYVSNALMDMYAKCGSM 419 (830)
Q Consensus 349 ~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~ 419 (830)
.++|++.|...+.. .|+.. .-.+|-..+.+.|+.++|.+.+..+. ..+..|+....--..+.|.+.|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999999874 55543 33445556778899999999988854 334566666777778888899988
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC----CCCccccccchhhhcchhh---HHHHHHHH---HHHHHhCC
Q 047408 420 ADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF----EPDGVTMACILPACASLAA---LERGREIH---GYILRHGI 489 (830)
Q Consensus 420 ~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~----~pd~~t~~~ll~a~~~~~~---~~~a~~i~---~~~~~~g~ 489 (830)
++-..+-..|..+ .....++.--..=+++.... +-...+...+..+-.+.++ .+.+..-. ......|+
T Consensus 543 E~fi~t~~~Lv~~--~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 543 EEFINTASTLVDD--FLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred HHHHHHHHHHHHH--HHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 7744433332211 00000000000000000000 1111111112222211111 11111111 11111222
Q ss_pred CCch--hHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh---------hhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC
Q 047408 490 SADR--NVANAIVDMYVKCGVLVLARSLFDMIPAKDL---------ISWTIMIAGYGMHGFGCDAIATFNDMRQA---GI 555 (830)
Q Consensus 490 ~~~~--~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~ 555 (830)
..+. ..+.-+|...+|-|++++|..+...+..-++ ..-..++.+....+++.+|.+.++.|... ..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 2221 2334455566666666666666554432111 11233444555556666666666665542 11
Q ss_pred CCChhH-HHHHHHHHHc-----------------------------------cCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 047408 556 EPDEVS-FISVLYACSH-----------------------------------SGLVDEGWRFFNMMRYECNIEPKLEHYA 599 (830)
Q Consensus 556 ~Pd~~t-~~~ll~a~~~-----------------------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 599 (830)
.|...+ |+..++..+. .+.+..|++++-... ...|+...++
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~n 777 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLIN 777 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHH
Confidence 233222 2212222222 334455555443332 3345533333
Q ss_pred -HHHHHHH----------hcCCHHHHHHHHHhC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc--
Q 047408 600 -CMVDLLS----------RTGNLSEAYRFIEMM---PVA-PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG-- 662 (830)
Q Consensus 600 -~lv~~l~----------r~g~~~eA~~~~~~m---~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-- 662 (830)
||.-++. |.-.+-.+..++++. ... -...++-.+..+|..-|-+-.|...+++++++.|.+.+
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~ 857 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDP 857 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccc
Confidence 2222211 112233444444332 111 01234445778888888888999999999998765432
Q ss_pred ----------hHHHHHHHHhhhcCHHHHHHHHH
Q 047408 663 ----------YYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 663 ----------~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+-..|.-+|-..|+.+-|..+.+
T Consensus 858 ~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 858 KEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred cCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 34567778999999998888754
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.1e-11 Score=125.45 Aligned_cols=432 Identities=11% Similarity=0.096 Sum_probs=286.8
Q ss_pred CCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChh--hHHHHHHH--HhccCChhH-HHHHHHHHHHhCCCCCccchHH
Q 047408 62 KTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTK--TYCSILQL--CADLKSLED-GKKVHSIICESGIVIDDGVLGS 136 (830)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~ll~~--~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~ 136 (830)
.+.+-|.++.. ...|...++.-+|+.|...+++.+ .-..|++. |....++.- -.+.|-.+.+.|-.. ...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S--~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS--TSSW- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc--cccc-
Confidence 34556666554 556888999999999998876653 33344432 222223222 223344444444222 3333
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCC
Q 047408 137 KLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRR 216 (830)
Q Consensus 137 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 216 (830)
|.|++.+ ++-+...+...++..||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-+-..
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~---- 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV---- 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----
Confidence 5666655 44444455668999999999999999999999999999888999999999999876543
Q ss_pred HHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH-HH
Q 047408 217 VKDAHKLFDELS----DRDVVSWNCMISGYIANGVAEK----GLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMF-GR 287 (830)
Q Consensus 217 ~~~A~~lf~~m~----~~~~~~~n~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-~~ 287 (830)
-.++..+|. .||..|+|+++++..+.|+++. |++++.+|++-|+.|.-.+|-.+|.-+.+.++... +.
T Consensus 257 ---~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 257 ---GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred ---cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 256666665 5999999999999999998764 67888999999999999999999998888777643 33
Q ss_pred HHHHHHHHh--C--C----CCCchHHHHHHHHhhcCCChHHHHHHHhhcCCC-----------CeehHHHHHHHHHhcCC
Q 047408 288 AVHAFALKA--C--F----SKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER-----------SVVSWTSMIAGYAREGV 348 (830)
Q Consensus 288 ~l~~~~~~~--g--~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-----------d~~~~~~li~~~~~~g~ 348 (830)
.+...+... | + +.|...+.+-++.+....+.+-|.++-.-.... ..+-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 344444321 1 2 234455566677777888999998887655432 12346667788888899
Q ss_pred hhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 349 FDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 349 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
.+.-+..|..|.-.-+-|+..+...+++|....+.++....++..++..|...+....--++..+++..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------- 482 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------- 482 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-----------
Confidence 999999999998888889999999999999999999999999998888874443333222222222211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhCCCCCcc---ccccchhhhcchhhHHHHH-HHHHHHHHhCCCCchhHHhHHHHHHH
Q 047408 429 MPVKDIVSWNTMIGALDLFVAMLQNFEPDGV---TMACILPACASLAALERGR-EIHGYILRHGISADRNVANAIVDMYV 504 (830)
Q Consensus 429 m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~---t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~ 504 (830)
+ .|+.. -+.....-|+ .++.++- .--.++.+. .......+.+.-.+.
T Consensus 483 -~------------------------hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 483 -L------------------------HPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLL 533 (625)
T ss_pred -C------------------------CCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHH
Confidence 0 12211 1222222121 1111111 112223333 344556677777889
Q ss_pred hcCCHHHHHHHhhhCC-C----CChhhHHHHHH---HHHhcCChHHHHHHHHHHHHcC
Q 047408 505 KCGVLVLARSLFDMIP-A----KDLISWTIMIA---GYGMHGFGCDAIATFNDMRQAG 554 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~-~----~d~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g 554 (830)
+.|+.++|.++|.-+. + |.....|+|+. .-.+...+..|+..++-|...+
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9999999999998763 2 23345665553 4445667777777777776543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=3.9e-12 Score=129.25 Aligned_cols=203 Identities=13% Similarity=0.146 Sum_probs=166.2
Q ss_pred hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHH
Q 047408 468 CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 544 (830)
....|++++|.+.+.+++...-......|| +.-.|-+.|++++|.+.|-++. ..++...-.+.+.|-...+..+|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 345689999999999988765444444444 3445788999999999997654 456667777888999999999999
Q ss_pred HHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 047408 545 ATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM- 621 (830)
Q Consensus 545 ~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 621 (830)
+++.+... +-|+.. .+..|...|-+.|+-.+|.+++-. .|..-| ++++..-|..-|....-+++|+..|++.
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~yd---syryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYD---SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhh---cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99988766 566655 667777889999999999987754 334445 6888888888899999999999999997
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 622 PVAPDATIWGSLLCGC-RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 622 ~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
-++|+.+-|.-++..| ++.|+++.|...++.....-|++....-.|+.+....|.
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 5799999999999887 778999999999999999999999888888888777764
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=3.2e-11 Score=132.56 Aligned_cols=511 Identities=12% Similarity=0.043 Sum_probs=277.8
Q ss_pred HHHHhhcCCCChh--hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC
Q 047408 85 VLYSSEKSKIDTK--TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK 162 (830)
Q Consensus 85 ~~~~m~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 162 (830)
++-.+...|+.|+ ||.+++..|+..|+.+.|. ++..|.-..+... ..+++.++......++.+.+. +|.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-EGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccccc-chhHHHHHhcccccccccCCC-------CCc
Confidence 3445666677664 8999999999999999998 8888877766666 788899999988888877765 677
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-HH-------HcCCCCCcccHHHHHHHHH--------------hcCCCCCHHHH
Q 047408 163 VFIWNLLMHEYSKTGNFKESLYLFKK-MQ-------SLGIAADSYTFSCVLKCLA--------------VVGNSRRVKDA 220 (830)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~--------------~~g~~~~~~~A 220 (830)
..+|+.|..+|.+.|+... ++..++ |. ..|+..-...+-..+.+|- ..| -.+.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg---lwaql 158 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG---LWAQL 158 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH---HHHHH
Confidence 7899999999999999765 333322 21 1232211111111111111 001 11222
Q ss_pred HHHHhhCC----------------------------------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047408 221 HKLFDELS----------------------------------DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVD 266 (830)
Q Consensus 221 ~~lf~~m~----------------------------------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 266 (830)
.++...+| .++..++.+++..-..+|+.+.|..++.+|.+.|+..+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 22222222 25667777777777778888888888888888888777
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 047408 267 LATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYARE 346 (830)
Q Consensus 267 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 346 (830)
..-|..+|-+ .++......+..-+...|+.|+..++..-+-...++|....+....+.-..-....+..+.+|...+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 7777777655 5666667777777777788887777776665555555433222211100000111222222221111
Q ss_pred CChh-----HHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcC---CCchhhHHHHHHHHHhcCC
Q 047408 347 GVFD-----GAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDM---QSSLYVSNALMDMYAKCGS 418 (830)
Q Consensus 347 g~~~-----~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~Li~~y~k~g~ 418 (830)
...+ -.+..+++..-.|+.-....| ++..-....|.-+...++-+.+..--+ ..++..+..++.-|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 1111 112222222222332222122 122222234555555555555432211 1223334444444433211
Q ss_pred ------hHHHHHHHhcCC-CCCchhHHHHHH------HHHHHHHHHhCC------------CCCccccccchhhhcchhh
Q 047408 419 ------MADAESVFNQMP-VKDIVSWNTMIG------ALDLFVAMLQNF------------EPDGVTMACILPACASLAA 473 (830)
Q Consensus 419 ------~~~A~~~f~~m~-~~~~~~~n~~i~------al~~f~~m~~~~------------~pd~~t~~~ll~a~~~~~~ 473 (830)
+..|.+.+..-. ..++.--.-+.. ++.-........ .+-...-..++..|.+.-+
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 111111110000 000000000000 111111110000 0111122344455555555
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh------hhHHHHHHHHHhcCChHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDL------ISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
..++.+.-+.....-+ ...|..||+......++++|....+++..+|. .-+..+...+.+++....+..++
T Consensus 475 ~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 5555544433333222 26788899999999999999999998887654 45777888889999999999999
Q ss_pred HHHHHcCC-CCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 047408 548 NDMRQAGI-EPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 548 ~~m~~~g~-~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 620 (830)
++|.+.-. .|+ ..++.-+++.-...|..+.-.+.++-+. .+|+.-+ .-++....+.++...|.+..+.
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd~s~a~ea~e~ 621 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDDQSAAQEAPEP 621 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccchhhhhhcchH
Confidence 99987422 333 3467778888888888888888877765 3344331 3344445566777666665544
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=1.8e-13 Score=143.27 Aligned_cols=256 Identities=16% Similarity=0.170 Sum_probs=113.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchh-hhcchhhHHHHHHHHHHHHH
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILP-ACASLAALERGREIHGYILR 486 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~ 486 (830)
.+..++.+.|++++|.+++++...... +|+...|-.++. .+-..++.+.|.+.+..+.+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~--------------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~ 72 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA--------------------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccccccccccc
Confidence 567888999999999999965433221 255555555444 44578899999999999988
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHH
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAG-IEPDEVSFI 563 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~t~~ 563 (830)
.+- .++..+..++.. ...+++++|.+++...- .++...|..++..+.+.|+++++.+++++..... .+++...|.
T Consensus 73 ~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 150 (280)
T PF13429_consen 73 SDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL 150 (280)
T ss_dssp -----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH
T ss_pred ccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 763 367778888887 79999999999988763 4567788899999999999999999999987643 234555677
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCRIH 640 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~ 640 (830)
.+...+.+.|+.++|.+.++... ...|+ ......++.++...|+.+++.++++.. ..+.|+..|..+..++...
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKAL---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 77788899999999999999987 45675 777889999999999999988888776 1234667899999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+.++|...++++.+..|+|+.....+++++...|+.++|.++++..-
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999987653
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=4e-08 Score=105.27 Aligned_cols=490 Identities=14% Similarity=0.108 Sum_probs=295.2
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhH
Q 047408 105 LCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKE 181 (830)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 181 (830)
+.....+.+.|+.++.+..+.- |... -|.-+|++..-++.|++++.+.. ..+...|-+-..---.+|+.+.
T Consensus 385 aAVelE~~~darilL~rAvecc--p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC--PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc--cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 3344445555666666555532 2211 23334444455566666655433 3355556555544455666666
Q ss_pred HHHHHHH----HHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 047408 182 SLYLFKK----MQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKE 257 (830)
Q Consensus 182 A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~ 257 (830)
..++.++ +...|+..+...|-.=-..| -..|..-.+..+...
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~----------------------------------e~agsv~TcQAIi~a 504 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEAC----------------------------------EDAGSVITCQAIIRA 504 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHH----------------------------------hhcCChhhHHHHHHH
Confidence 5555544 22345444444433333333 223333333333333
Q ss_pred HHHCCCCC--ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CC
Q 047408 258 MLNLGFNV--DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RS 332 (830)
Q Consensus 258 m~~~g~~p--d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d 332 (830)
...-|+.- -..|+...-..|.+.+.++-++.++...++. ++.+..+|...+..=-..|..++-..+|++... +.
T Consensus 505 vigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka 583 (913)
T KOG0495|consen 505 VIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA 583 (913)
T ss_pred HHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc
Confidence 33333322 1235555556666666666666666666654 344555555555555555666666666666543 24
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHH
Q 047408 333 VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDM 412 (830)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 412 (830)
.+.|-....-+-..|+...|..++.+..+.... +...+...+..-.....++.|+.++...... .++..+|.--+..
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANL 660 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHH
Confidence 455666666666667777777776666654221 3445555556666666677777777666543 3555566555555
Q ss_pred HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcc-ccccchhhhcchhhHHHHHHHHHHHHHhCCCC
Q 047408 413 YAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGV-TMACILPACASLAALERGREIHGYILRHGISA 491 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 491 (830)
---.+..++|.+++++..+. -|+-. .|..+-..+-+.++++.|+..+..=.+. ++.
T Consensus 661 er~ld~~eeA~rllEe~lk~----------------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~ 717 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS----------------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPN 717 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh----------------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCC
Confidence 55666777777777654332 12221 2222333344455555555555433332 244
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
.+..|-.|...--+.|.+-.|+.+|++.. .+|...|-..|..-.++|+.+.|..+..+.+++ .+-+..-+.--|..
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 57788888889999999999999999765 347789999999999999999999999888875 33333445555555
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA-TIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a 646 (830)
.-+.++-......+. ..+-|....-.+..++-...++++|.+.|.+. ...||. .+|.-+..-+..||.-+.-
T Consensus 797 e~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred ccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHH
Confidence 555555333333332 23345566677778888889999999999886 667764 7899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHH
Q 047408 647 EKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
..++.+...-+|.+...+...+
T Consensus 871 kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 871 KEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHhccCCCCCcHHHHHh
Confidence 9999999999999876655443
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.9e-10 Score=114.69 Aligned_cols=345 Identities=15% Similarity=0.114 Sum_probs=246.1
Q ss_pred HHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchH--HHHHHHhhccCcchhh
Q 047408 310 DMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI--TSILHACACDGLLEIG 387 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a 387 (830)
-.+-+.|....|+..|.....+-+..|.+.+...--.-+.+.+..+ . .|...|..-+ -.+..++......+++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888877665556666655433222222222211 1 1222222222 1234466666677778
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhh
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPA 467 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a 467 (830)
.+=.......|++.+...-+-...++-...++|.|+.+|+++.+.|+.- -.|..||+.+|-.
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------l~dmdlySN~LYv 308 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------LDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------------------chhHHHHhHHHHH
Confidence 8878888888888777766666667778889999999999988766431 1344566655544
Q ss_pred hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHH
Q 047408 468 CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 544 (830)
-.....+.---+....+- .--+.+...+.+-|+-.++.++|...|++.. ++-...|+-|..-|....+...|+
T Consensus 309 ~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 333222221111111111 1234556677788999999999999999765 445678999999999999999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047408 545 ATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMP 622 (830)
Q Consensus 545 ~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 622 (830)
+-|+..++ +.| |...|-+|..+|.-.++..=|+-+|+... .++| |...|.+|.+.|.+.++++||++-|+..-
T Consensus 385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998 555 45589999999999999999999999876 6777 58899999999999999999999999872
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCcchHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 623 --VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE-------LEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 623 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
-..+...+..|...+...++.++|...+++-++ .+|+-..+-.-|++-+.+.++|++|...-..
T Consensus 460 ~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 460 LLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred hccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 233458889999999999999999999998876 4454455566789999999999999886443
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.7e-11 Score=130.30 Aligned_cols=247 Identities=14% Similarity=0.124 Sum_probs=196.4
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCC--CCchhHHhHHHHHHHhcCCHH-HHHHHhhhCCCCChhhHHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGI--SADRNVANAIVDMYVKCGVLV-LARSLFDMIPAKDLISWTIMIAGYG 535 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~~~-~A~~~f~~m~~~d~~~~~~li~~~~ 535 (830)
.....+..+|..+++.++++.+|+.+.+..- -.+..+|.+.+--+-+.=.+. -|..+.+. ..-.+.+|-++.+.|.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT-DPNSPESWCALGNCFS 432 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh-CCCCcHHHHHhcchhh
Confidence 4556678899999999999999999987531 225667776664433322222 13333333 2346789999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHH---HHHHHhcCCH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACM---VDLLSRTGNL 611 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l---v~~l~r~g~~ 611 (830)
-+++.+.|++.|++..+ +.| ...+|+-+..-+.....+|.|...|+... ..+..||+++ .-.|.|.+++
T Consensus 433 LQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchh
Confidence 99999999999999998 788 45578877777788889999999998754 5677888875 5568899999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 612 SEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.|+-.|+++ .+.|. .++...+...+.+.|+.|+|..++++++-++|.|+-.-+..+.++...+++++|...++++++
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 9999999987 78885 466666777789999999999999999999999999999999999999999999999999986
Q ss_pred CCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCc
Q 047408 690 RGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGY 739 (830)
Q Consensus 690 ~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~ 739 (830)
.-|+...++..|.++.++|+...+
T Consensus 586 --------------------------~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 586 --------------------------LVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred --------------------------hCcchHHHHHHHHHHHHHHccchH
Confidence 346667788888888887765443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.38 E-value=2.8e-10 Score=126.26 Aligned_cols=330 Identities=19% Similarity=0.231 Sum_probs=222.0
Q ss_pred hhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcchHHHHHHHhhccCcchhh
Q 047408 312 YSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEP-DVYAITSILHACACDGLLEIG 387 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a 387 (830)
+++ |+.++|.+++.++.. ++...|.+|...|-+.|+.++++..+-..-. ..| |..-|..+-.-..+.|++++|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHH
Confidence 344 999999999998865 4667899999999999999999887654433 334 445566666677778888888
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhh
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPA 467 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a 467 (830)
.-.+..+++.. +++....--=..+|-+.|+...|..-|.++...+. |..
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---------------------~~d--------- 275 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---------------------PVD--------- 275 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---------------------chh---------
Confidence 88888888876 44444444456778888888888887777654421 111
Q ss_pred hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C---ChhhHHHHHHHHHhcCChHH
Q 047408 468 CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--K---DLISWTIMIAGYGMHGFGCD 542 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~~g~~~~ 542 (830)
..+++..+. ..+..|...++-+.|.+.++.... . +...+|.++..|....+++.
T Consensus 276 ---------~er~~d~i~------------~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 276 ---------IERIEDLIR------------RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred ---------HHHHHHHHH------------HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHH
Confidence 111111110 122333334444445444444332 1 23345566666666666666
Q ss_pred HHHHHHHHHHcC---------------------------CCCChhHHHHHHHHHHccC--CHHHHHHHHHHhHhhcCCCC
Q 047408 543 AIATFNDMRQAG---------------------------IEPDEVSFISVLYACSHSG--LVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 543 A~~l~~~m~~~g---------------------------~~Pd~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p 593 (830)
|+.....+.... +.++... ..+.-++.|.. ...+++..|- . +..+.|
T Consensus 335 ~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l--~-~~n~~~ 410 (895)
T KOG2076|consen 335 ALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFL--V-EDNVWV 410 (895)
T ss_pred hhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHH--H-HhcCCh
Confidence 666666665511 1222222 11222223333 3333433332 2 335444
Q ss_pred --CcchHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 594 --KLEHYACMVDLLSRTGNLSEAYRFIEMMPV---APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 594 --~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
+.+.|.-+.++|-+.|++.+|++++..+-. .-+..+|--+...+...|.+++|...+++++.+.|++..+-..|+
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 478899999999999999999999998832 224679999999999999999999999999999999999999999
Q ss_pred HHHhhhcCHHHHHHHHHHHHhCCCcCCCceeE
Q 047408 669 NVYAEAEKWEEVKKLREKISRRGLKKNPGCSW 700 (830)
Q Consensus 669 ~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~sw 700 (830)
.+|...|+.|+|.++.+.|..-+-++.+++.|
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999998877544445566776
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.6e-10 Score=116.91 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
|+.-.+.+-+..+++.... +...|--+..+|....+.++-...|+... ..|..+|.--...+.-.+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 5666777778877776533 33336667778999999999999999765 4466677777777777889999999999
Q ss_pred HHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047408 549 DMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD 626 (830)
Q Consensus 549 ~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 626 (830)
+.+. +.|+.+ .|.-+-.+..+.+.++++...|+....++ +-.++.|+-....|...+++++|.+.|+.. .++|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 788776 68888888889999999999999998654 345789999999999999999999999886 45554
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 627 ---------ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 627 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+.+-.+++-. +-.+++..|+.+++++++++|...-+|..|+.+-...|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344333 234899999999999999999999999999999999999999999998643
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=6.1e-11 Score=127.63 Aligned_cols=277 Identities=10% Similarity=-0.010 Sum_probs=204.1
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
.++|...|..+...- .....+..-+..+|...+++++|.++|+.+...+..- --+..+|.+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r------------------v~~meiyST 395 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR------------------VKGMEIYST 395 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------------------ccchhHHHH
Confidence 455556666633332 3334677778899999999999999999886543210 112223333
Q ss_pred chhhhcchhhHHHHHHHHH-HHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCC
Q 047408 464 ILPACASLAALERGREIHG-YILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGF 539 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~ 539 (830)
+|--+-+.- +...+. .+++. -+..+.+|-++.+.|+-.++.+.|.+.|++..+- ...+|+-+..-+.....
T Consensus 396 ~LWHLq~~v----~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 396 TLWHLQDEV----ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE 470 (638)
T ss_pred HHHHHHhhH----HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence 332221111 111111 12222 2456889999999999999999999999987644 44677777777888889
Q ss_pred hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRF 617 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~ 617 (830)
+|.|...|+..+. +.|... .|..+...|.+.+.++.|.-.|+.+. .|.|. .....++...+-+.|+.|+|+++
T Consensus 471 ~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 471 FDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred HHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 9999999999876 677766 67788889999999999999999887 78885 66677888899999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 618 IEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 618 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++++ .++| |+..----...+...+++++|...+|++.++.|+++..|.+|+.+|-+.|+.+.|..-+.-|.+
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 9997 4444 3332222334456678999999999999999999999999999999999999999987766554
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.7e-09 Score=108.64 Aligned_cols=264 Identities=11% Similarity=0.055 Sum_probs=205.5
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHH
Q 047408 398 DMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERG 477 (830)
Q Consensus 398 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a 477 (830)
|...++.+.-...+-+..++++.+..++++.+.+.|+ +....+..=|.++..+|+-.+-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp---------------------fh~~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP---------------------FHLPCLPLHIACLYELGKSNKL 297 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC---------------------CCcchHHHHHHHHHHhcccchH
Confidence 3455667777788888899999999999999888774 3443443444444555554444
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047408 478 REIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD---LISWTIMIAGYGMHGFGCDAIATFNDMRQAG 554 (830)
Q Consensus 478 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 554 (830)
-.+-..+++. .|....+|-++.--|.--|+.++|++.|.+...-| -..|-.....|+-.|..++|+..+...-+.
T Consensus 298 f~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl- 375 (611)
T KOG1173|consen 298 FLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL- 375 (611)
T ss_pred HHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-
Confidence 4443344443 46678899999999999999999999999765433 468999999999999999999999888763
Q ss_pred CCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CC------C
Q 047408 555 IEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM--PV------A 624 (830)
Q Consensus 555 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~------~ 624 (830)
-|- ..-+.-+.--|.+.+..+.|.++|.+.. ++.|+ +..++-+.-+....+.+.+|...|+.. ++ +
T Consensus 376 -~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 376 -MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred -ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 332 2234455566888999999999999876 77784 666677776777888999999988875 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 625 P-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 625 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+ -..+|+.|+.+|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+.+.|.+.+.+..
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1 234678888999999999999999999999999999999999999999999999999987665
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=1.5e-09 Score=119.80 Aligned_cols=143 Identities=10% Similarity=-0.046 Sum_probs=73.9
Q ss_pred HHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH---HHHHHHHHccCCHHHHHHHH
Q 047408 509 LVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF---ISVLYACSHSGLVDEGWRFF 582 (830)
Q Consensus 509 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~---~~ll~a~~~~g~~~~a~~~~ 582 (830)
.+...+..+..+. ++...+..+...+...|+.++|++++++..+. .||.... ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3444555555553 47778888888888888888888888888873 5555421 11111112234455555555
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 583 NMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEM---MPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 583 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
+...+...-.|+.....++..++.+.|++++|.+.|+. ....||..++..|...+...|+.++|..++++.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54443221111112333444555555555555555552 133444444444444455555555555555444
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=9.1e-09 Score=113.77 Aligned_cols=530 Identities=14% Similarity=0.069 Sum_probs=259.8
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC----cchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 047408 117 KVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK----VFIWNLLMHEYSKTGNFKESLYLFKKMQSL 192 (830)
Q Consensus 117 ~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 192 (830)
.++..+...|+.|+ ..+|.+||.-||..|+.+.|- +|..|.-++ -..++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~Pn-RvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPN-RVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCc-hhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 45667788899999 899999999999999999998 888887553 457899999999988887665
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCChhhHH
Q 047408 193 GIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLN-LGFNVDLATMV 271 (830)
Q Consensus 193 g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~ 271 (830)
.|...||..|+.+|...||+..++...+.+.. ++..+..+|....-..++....- -+.-||..+..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~-----------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i 146 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLES-----------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI 146 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHH-----------HHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence 68889999999999999987666666663333 23333444444333333333221 12334433321
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH--H--HH-HhhcCCChHHHHHHHhhcCC-CCeehHHHHHHHHHh
Q 047408 272 TVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT--L--LD-MYSKCGDLDGAIRVFEKMGE-RSVVSWTSMIAGYAR 345 (830)
Q Consensus 272 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~--L--i~-~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~ 345 (830)
-++ .-+.+++..++.+....+..++. . ++ +-.-...+++-........+ ++..++.+.+..-.-
T Consensus 147 lll----------v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 147 LLL----------VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred HHH----------HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 111 01112222222221000000000 0 00 00001111111111122222 455555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 047408 346 EGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 346 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
+|+.+.|..++.+|.+.|++.+..-|-.+|-+ .++......+...|...|+.|+..++.-.+-...++|....+...
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 56666666666666666655555555555443 445555555555555556666555555444444443332221111
Q ss_pred HhcCCCCCchhHHHHHH---------------HHHHHHHHHhCC--CCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 426 FNQMPVKDIVSWNTMIG---------------ALDLFVAMLQNF--EPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~---------------al~~f~~m~~~~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
.+.-.--....+.++.. .+..+.+..-.| .|. +.-+...-..+.|.-+...++-+.+...-
T Consensus 294 sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~--aiws~c~~l~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 294 SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILE--AIWSMCEKLRHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccch--HHHHHHHHHHHcCCCchHHHHHhhhcCCc
Confidence 00000000000000000 111222221112 111 10011111111233333444433332211
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh-hhHHHHHHHHHh---cCChHHHHHHHHHHH------------H
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDL-ISWTIMIAGYGM---HGFGCDAIATFNDMR------------Q 552 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-~~~~~li~~~~~---~g~~~~A~~l~~~m~------------~ 552 (830)
+ ...+.-+++| .+.+.+.|.+...+.. ..++ .-.|... ..+..+..++....+ .
T Consensus 372 ~----r~s~~~V~a~-----~~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss 441 (1088)
T KOG4318|consen 372 L----RDSGQNVDAF-----GALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSS 441 (1088)
T ss_pred c----ccCcchHHHH-----HHHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhH
Confidence 1 1111111111 1223344444433321 1122 1111111 111222222222111 0
Q ss_pred c----CCCC-------ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 553 A----GIEP-------DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 553 ~----g~~P-------d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
. -+.| -...-+.++.+|...-...++++.-+... .+-+ ...|..||+.+.+..++++|..+.++.
T Consensus 442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~ 517 (1088)
T KOG4318|consen 442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEI 517 (1088)
T ss_pred HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhh
Confidence 0 0111 01112344445544444444443333222 1111 256899999999999999999999887
Q ss_pred C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 622 P-----VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE---LEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 622 ~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
. +.-|..-+..+.....+++....+..+.+...+ ..|.-.....-+-|--+..|+-+...++.+-....|+.
T Consensus 518 d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 518 DTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred cccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 3 223445577788888888888888888776654 33443445556667777888988888888888888886
Q ss_pred CCCceeE
Q 047408 694 KNPGCSW 700 (830)
Q Consensus 694 ~~~~~sw 700 (830)
- .|--|
T Consensus 598 e-tgPl~ 603 (1088)
T KOG4318|consen 598 E-TGPLW 603 (1088)
T ss_pred h-cccce
Confidence 6 34445
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.28 E-value=6.1e-10 Score=122.19 Aligned_cols=285 Identities=11% Similarity=0.014 Sum_probs=193.3
Q ss_pred CCChHHHHHHHhhcCCC--Ce-ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHH--HHHHHhhccCcchhhhh
Q 047408 315 CGDLDGAIRVFEKMGER--SV-VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAIT--SILHACACDGLLEIGKD 389 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~~--d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~ 389 (830)
.|+++.|++.+...++. +. ..|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58899999888876553 22 22322234447889999999999999763 56655443 22456778899999999
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhc
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACA 469 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~ 469 (830)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+....+ |
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-------------------~------------- 221 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-------------------E------------- 221 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-------------------H-------------
Confidence 999998887 5667889999999999999999999999887654310 0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l 546 (830)
+...++- ...+..++....+..+.+...++++.++ ..++..+..+...+...|+.++|.++
T Consensus 222 -----~~~~~l~-----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 222 -----EHRAMLE-----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred -----HHHHHHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0000000 0011122222233334455555566554 34666777777888888888888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047408 547 FNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVA 624 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 624 (830)
+++..+. .||.. ..++.+....++.+++.+..+...++ .|+ ...+.++..++.+.|++++|.+.|+.+ ...
T Consensus 286 L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 286 ILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8877763 44442 11233334457888888888777643 343 456777888888888888888888876 667
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047408 625 PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 657 (830)
|+...+..|...+...|+.++|...+++.+.+.
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888777778888888888888888888877653
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.25 E-value=4.4e-09 Score=115.42 Aligned_cols=279 Identities=12% Similarity=0.042 Sum_probs=187.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 047408 346 EGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 346 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+..-.............+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588888887776654432111 1122222334456677777777777776543121122222335666777777777776
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 047408 426 FNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK 505 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 505 (830)
++++.+.+ +.++.+...+...|.+
T Consensus 176 l~~~~~~~--------------------------------------------------------P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 176 VDKLLEVA--------------------------------------------------------PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHhcC--------------------------------------------------------CCCHHHHHHHHHHHHH
Confidence 66654432 3455666677777777
Q ss_pred cCCHHHHHHHhhhCCCCCh-----------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCC
Q 047408 506 CGVLVLARSLFDMIPAKDL-----------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGL 574 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~~d~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 574 (830)
.|++++|.+++..+.+... ..|..++.-.....+.+...++++.+-+. .+.+......+..++...|+
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 7777777777776653321 13334444444555566677777776543 34455678888899999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
.++|.+.++...+ ..|+... .++......|+.+++++.+++. ...|+ +..+.++...|...+++++|+..+++
T Consensus 279 ~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988763 3444421 1222333559999999999887 45564 56788889999999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 653 VFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 653 ~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+++.+|++ ..|..|+.++.+.|+-++|.+.+++-.
T Consensus 354 al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 354 ALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999996 457799999999999999999988653
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.7e-07 Score=95.50 Aligned_cols=488 Identities=12% Similarity=0.100 Sum_probs=269.3
Q ss_pred CCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHH
Q 047408 145 CGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAH 221 (830)
Q Consensus 145 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~ 221 (830)
.+++..|+.+|+... .+++..|---+..=.++.....|..++++....=...|..-|--+. .=-..| .+..|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-mEE~Lg---Ni~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-MEEMLG---NIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-HHHHhc---ccHHHH
Confidence 345555666666543 3344555555555566666666666666655432222322222111 111223 477777
Q ss_pred HHHhhCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC
Q 047408 222 KLFDELS--DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKA-CF 298 (830)
Q Consensus 222 ~lf~~m~--~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~ 298 (830)
++|++-- +|+...|++.|.-=.+....+.|..++.+..- +.|+..+|.--.+-=-+.|....+++++..+++. |-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 7777654 57777888888877787888888888877764 4577777766666666777777777777776653 11
Q ss_pred C-CCchHHHHHHHHhhcCCChHHHHHHHhh----cCCCC-eehHHHHHHHHHhcCCh---hHHHHH-----HHHHHHcCC
Q 047408 299 S-KEISFNNTLLDMYSKCGDLDGAIRVFEK----MGERS-VVSWTSMIAGYAREGVF---DGAIRL-----FRGMVREGI 364 (830)
Q Consensus 299 ~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~----m~~~d-~~~~~~li~~~~~~g~~---~~A~~l-----~~~m~~~g~ 364 (830)
+ .+..++++....=.++...+.|+-+|.- +|... ...|.....-=-+-|+. ++++-- |+.++.. -
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 1 1222334444444455566666666543 22211 11222222211222332 222221 2222222 1
Q ss_pred CCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCch-hhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHH
Q 047408 365 EPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSL-YVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGA 443 (830)
Q Consensus 365 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~a 443 (830)
+-|-.|+--.+..-...|+.+..+++++.++..-.+... ..|...|-.... ..+|+++
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin-------YalyeEl-------------- 377 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN-------YALYEEL-------------- 377 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH-------HHHHHHH--------------
Confidence 223334444444444445555555555555443211100 111111111110 0111221
Q ss_pred HHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH----hcCCHHHHHHHhhhC
Q 047408 444 LDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYV----KCGVLVLARSLFDMI 519 (830)
Q Consensus 444 l~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m 519 (830)
...+.+..++++...++ -++...+++.-+=-||+ ++.++..|++++...
T Consensus 378 --------------------------e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 378 --------------------------EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred --------------------------HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 22345666666666666 23444555555544454 567777777777655
Q ss_pred C--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 520 P--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 520 ~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
. .|-.-++-..|..-.+.++++....+|++.++ ..|. ..++.....-=...|+.+.|+.+|+...++..+..-..
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 4 44555666677777777888888888888887 4454 34666666556677888888888888776533333445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc----
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCR-----IHH-----------EVKLAEKVAEHVFE---- 655 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~---- 655 (830)
.|.+.||.=...|.++.|..+++++ ...+..-+|-++..--. ..+ ++..|+.+++++..
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 6777777777888888888888876 33455557777654322 233 56788888887753
Q ss_pred cCCCC--cchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 656 LEPDN--TGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 656 l~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+|.. ......+-++-...|.-.+...|-++|.+
T Consensus 589 ~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 589 STPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 34432 12333445566677877788777777653
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2e-11 Score=89.98 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 047408 522 KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 522 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 571 (830)
||+++||++|.+|+++|++++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=6.8e-07 Score=95.98 Aligned_cols=397 Identities=13% Similarity=0.153 Sum_probs=194.2
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH-HhCCCCCchHHHHHHHH
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFAL-KACFSKEISFNNTLLDM 311 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~Li~~ 311 (830)
..|++|..-|.+.|.++.|.++|.+-.+.- ....-|+.+.++|+.......+..+- ... +.|-+.+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~--------- 316 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD--------- 316 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh---------
Confidence 479999999999999999999999877642 33445666777765433221111111 000 11111111
Q ss_pred hhcCCChHHHHHHHhhcCC---------------CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc------ch
Q 047408 312 YSKCGDLDGAIRVFEKMGE---------------RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV------YA 370 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~---------------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~t 370 (830)
-+++-...-|+.+.. .++..|..-+.. ..|++.+-...|.+..+. +.|-. ..
T Consensus 317 ----~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 317 ----VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTL 389 (835)
T ss_pred ----hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhH
Confidence 122223333333322 245566655443 467788888888888764 34432 23
Q ss_pred HHHHHHHhhccCcchhhhhHHHHHHhhcCCCc---hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 047408 371 ITSILHACACDGLLEIGKDVHDYIKENDMQSS---LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLF 447 (830)
Q Consensus 371 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f 447 (830)
|..+.+-|-..|+++.|+.+|....+..++.- ..+|-.-.+|=.+..+++.|+++.+....-
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v--------------- 454 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV--------------- 454 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---------------
Confidence 56666677778888888888888777654332 345555556666666777777766554211
Q ss_pred HHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhH
Q 047408 448 VAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISW 527 (830)
Q Consensus 448 ~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~ 527 (830)
|.... +.. ...+..-++ . +-.+..+|.-.+|.--.+|-++....+++++..--+.|=
T Consensus 455 --------P~~~~----~~~-yd~~~pvQ~-r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 455 --------PTNPE----LEY-YDNSEPVQA-R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred --------CCchh----hhh-hcCCCcHHH-H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 11100 000 000000000 0 011233444444555555555555555555442211111
Q ss_pred HHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHH---HccCCHHHHHHHHHHhHhhcCCCCCc--chH
Q 047408 528 TIMI---AGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYAC---SHSGLVDEGWRFFNMMRYECNIEPKL--EHY 598 (830)
Q Consensus 528 ~~li---~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y 598 (830)
-.++ .-+-.|..++++.+.|++-+..=--|+.. .++..|.-+ ...-.++.|+.+|++..+ +.+|.. ..|
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiy 589 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHH
Confidence 1111 11234445556666555544431223332 233333222 122345566666666553 333321 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch--HHHHHHHHh
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM--PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY--YVLLANVYA 672 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y~ 672 (830)
-....+=.+-|....|++++++. .+++. ...||..|.--...=-+-.-+.+++++++.-|++-.- ..-.+++-.
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET 669 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh
Confidence 11122222445556666666665 22332 1355555543221112233455677777766664322 234567777
Q ss_pred hhcCHHHHHHHHHHHH
Q 047408 673 EAEKWEEVKKLREKIS 688 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~ 688 (830)
+.|..+.|..++..-.
T Consensus 670 klGEidRARaIya~~s 685 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGS 685 (835)
T ss_pred hhhhHHHHHHHHHhhh
Confidence 7777777777765443
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.9e-09 Score=108.74 Aligned_cols=246 Identities=16% Similarity=0.139 Sum_probs=181.1
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC-----------------------
Q 047408 467 ACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD----------------------- 523 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d----------------------- 523 (830)
++-.+...+++.+-.......|++.+...-+-....+-...+++.|+.+|+++.+.|
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 334444555555555555555655555555544455555556666666666554321
Q ss_pred --------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhh
Q 047408 524 --------------LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYE 588 (830)
Q Consensus 524 --------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~ 588 (830)
+.|...+.+-|+..++.++|+..|++.++ +.|.... ++-+..-+........|.+-++...
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-- 391 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-- 391 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH--
Confidence 22333345567778889999999999998 6777764 5555577888899999999999887
Q ss_pred cCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 589 CNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 589 ~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
.+.| |-..|-.|..+|.-.+...-|+=+|++. ..+| |...|.+|...|.+.++.++|+..+++++...-.+..+|+
T Consensus 392 -di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 392 -DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred -hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 6777 5678889999999999999999999998 6777 6899999999999999999999999999999888889999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.|+++|-+.++.++|...+++-.+.-. ......|+..++...|++-..+|++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~-------------------~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSE-------------------LEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-------------------hhcccchHHHHHHHHHHHHHHhhcc
Confidence 999999999999999998876543110 0011245566677777766666553
No 50
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.3e-11 Score=89.56 Aligned_cols=50 Identities=38% Similarity=0.594 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 047408 230 RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCAN 279 (830)
Q Consensus 230 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 279 (830)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.22 E-value=3.4e-11 Score=126.10 Aligned_cols=253 Identities=13% Similarity=0.153 Sum_probs=74.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH-HhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCC
Q 047408 340 IAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH-ACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGS 418 (830)
Q Consensus 340 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 418 (830)
...+.+.|++++|++++++-.....+|+...|-.++. .+-..++.+.|.+.++.+...+- .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 3444555566666665544333322334333333222 23334555555555555554442 234445555555 46666
Q ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhH
Q 047408 419 MADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANA 498 (830)
Q Consensus 419 ~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 498 (830)
+++|.+++...-+++ +++..+..
T Consensus 93 ~~~A~~~~~~~~~~~---------------------------------------------------------~~~~~l~~ 115 (280)
T PF13429_consen 93 PEEALKLAEKAYERD---------------------------------------------------------GDPRYLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc---------------------------------------------------------cccchhhH
Confidence 666666655433221 22233333
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHcc
Q 047408 499 IVDMYVKCGVLVLARSLFDMIP-----AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHS 572 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~ 572 (830)
++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.|++.++ ..|+. .....++..+...
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHC
Confidence 4444555555555555554422 23445566666666666666666666666666 45543 3455566666666
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
|+.+++.+++....... ..+...+..+..+|...|+.++|+..+++. ...| |+.+...+..++...|+.++|..+.
T Consensus 194 ~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp CHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred CChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66666666666655332 334455566666666777777777766665 2234 4555666666677777777777766
Q ss_pred HHHhc
Q 047408 651 EHVFE 655 (830)
Q Consensus 651 ~~~~~ 655 (830)
+++++
T Consensus 272 ~~~~~ 276 (280)
T PF13429_consen 272 RQALR 276 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 66553
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=2.1e-09 Score=108.89 Aligned_cols=197 Identities=10% Similarity=0.041 Sum_probs=164.0
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
....+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677788899999999999999998764 3356788889999999999999999999998853 2234567777888
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 646 (830)
+...|++++|.++|+..............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998753222223556778889999999999999999886 4444 466788888899999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999898888889999999999999999999887764
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=8.4e-07 Score=91.96 Aligned_cols=413 Identities=13% Similarity=0.114 Sum_probs=242.9
Q ss_pred cCChHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHH
Q 047408 76 VGNLEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRV 154 (830)
Q Consensus 76 ~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 154 (830)
++++..|.++|++.+..+-.. ..+..-+..-.+.+.+..|+.++++.+.. .|....+|-..+-|--..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344455555555554332111 12333333334445555555555555442 222123444444444455555555555
Q ss_pred HhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCc
Q 047408 155 FNKID--NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDV 232 (830)
Q Consensus 155 f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~ 232 (830)
|+... +|+...|++.|.-=.+-...+.|..++++..- ..|++
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~------------------------------------~HP~v 207 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL------------------------------------VHPKV 207 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe------------------------------------ecccH
Confidence 55432 44555555555555555555555555554442 23455
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH----hcCCChHHHHHHHHHHHHhCCCCC-chHHHH
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGC----ANCGALMFGRAVHAFALKACFSKE-ISFNNT 307 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~----~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~ 307 (830)
.+|--...-=-++|+...|..+|....+. -.|...-..++.++ .++...+.++.++..++..-.... ..++..
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~ 285 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 55555455555556665566655554432 11222222233333 345566777777777776533322 234444
Q ss_pred HHHHhhcCCChHHHHHH--------HhhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-------
Q 047408 308 LLDMYSKCGDLDGAIRV--------FEKMGER---SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVY------- 369 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~--------f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------- 369 (830)
++..=-+.|+....... ++.+... |-.+|--.++.--..|+.+...++|++.... ++|-..
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RY 364 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHH
Confidence 44444444554333222 2222222 4557777777777789999999999988754 555321
Q ss_pred hHHHHHHHh---hccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHH----hcCChHHHHHHHhcCCCCCchhHHHHHH
Q 047408 370 AITSILHAC---ACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYA----KCGSMADAESVFNQMPVKDIVSWNTMIG 442 (830)
Q Consensus 370 t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m~~~~~~~~n~~i~ 442 (830)
.|.-+=-+| ....+.+.+++++...++. ++...+++.-+=-||+ ++.++..|++++.....+
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---------- 433 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---------- 433 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc----------
Confidence 222221122 2457888888999888873 4555666666666665 567888888887654432
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-C
Q 047408 443 ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-A 521 (830)
Q Consensus 443 al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~ 521 (830)
-|-.-+|-.-|..=.+++.++..+.+++..++.+ +.+..+|.-....-...|+.+.|+.+|+-.. +
T Consensus 434 ------------cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 434 ------------CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred ------------CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 4666677777777778888999999999888876 5577788877777788899999999998654 3
Q ss_pred C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 522 K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 522 ~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
| ....|-+.|.--...|.+++|..+|+++++.
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 3 3467888888888889999999999999874
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.19 E-value=1.5e-08 Score=111.88 Aligned_cols=291 Identities=9% Similarity=0.031 Sum_probs=201.9
Q ss_pred hhHHHHHH--HhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHH
Q 047408 66 YNAEIGRF--CEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMF 142 (830)
Q Consensus 66 ~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y 142 (830)
...+..+. ...|+++.|.+.+.+.....++|. .+.....+....|+.+.+...+....+....+. ..+.-.....+
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~ 163 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHH
Confidence 33344443 468999999999999888777765 445556777788999999999999877542222 23444467888
Q ss_pred HhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH---HhcCC-CC
Q 047408 143 VTCGDLKEGRRVFNKIDN---GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCL---AVVGN-SR 215 (830)
Q Consensus 143 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~---~~~g~-~~ 215 (830)
...|+.+.|+..|+.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+..........+. ...+. ..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998763 356678899999999999999999999999987543332211111111 11110 11
Q ss_pred CHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHH--hcCCChHHHHHH
Q 047408 216 RVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMV-TVLSGC--ANCGALMFGRAV 289 (830)
Q Consensus 216 ~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~--~~~~~~~~~~~l 289 (830)
..+...+.++..+. .+...+..+...+...|+.++|.+++++..+. .||..... .++..+ ...++.....+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 24556666777764 48889999999999999999999999999875 35544210 122222 233556666666
Q ss_pred HHHHHHhCCCCCc--hHHHHHHHHhhcCCChHHHHHHHh--hc--CCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 290 HAFALKACFSKEI--SFNNTLLDMYSKCGDLDGAIRVFE--KM--GERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 290 ~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~--~m--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
.+...+.. +.|+ ....++-..+.+.|++++|++.|+ .. ..||...+..+...+.+.|+.++|.+++++-.
T Consensus 322 ~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66655542 3333 555677777888888888888888 34 23666667778888888888888888877643
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=6.9e-09 Score=113.35 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=138.8
Q ss_pred hhcchhhHHHHHHHHHHHHHh-----C--CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCC
Q 047408 467 ACASLAALERGREIHGYILRH-----G--ISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~-----g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 539 (830)
.+...+.+.+|.-++..+... | .+.-..+++.|...|.+.|++++|...+
T Consensus 250 ~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~----------------------- 306 (508)
T KOG1840|consen 250 VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC----------------------- 306 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH-----------------------
Confidence 344445555555555444321 2 1112345566667899999999998877
Q ss_pred hHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC--C----cchHHHHHHHHHhcCCH
Q 047408 540 GCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP--K----LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~----~~~y~~lv~~l~r~g~~ 611 (830)
++|++++++ ..|..+..+ -++.+...|.+.+.+++|..++....+.+.-.| + ..+|+.|..+|-..|++
T Consensus 307 -e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 307 -ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 557777777 333444443 366677778999999999999887665444222 2 46799999999999999
Q ss_pred HHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCCCCc---chHHHHHHHHhhh
Q 047408 612 SEAYRFIEMM---------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFE----LEPDNT---GYYVLLANVYAEA 674 (830)
Q Consensus 612 ~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----l~p~~~---~~~~~l~~~y~~~ 674 (830)
+||++++++. ...+. ....+-|..+|...++.+.|..++++... ..|+++ ..|..|+-+|.+.
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 9999999886 11232 45677788899999999999999887654 345554 5688999999999
Q ss_pred cCHHHHHHHHHHHH
Q 047408 675 EKWEEVKKLREKIS 688 (830)
Q Consensus 675 g~~~~A~~~~~~m~ 688 (830)
|++++|.++-+...
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999877654
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=2.9e-08 Score=101.52 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=137.4
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 047408 505 KCGVLVLARSLFDMIPAKDLISWTIMIA---GYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRF 581 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 581 (830)
-.|++++|.+.+.+....|...-.++.+ .+-..|+.++|++.|-++..- +.-+...+..+.+-|....+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4578889988888887776654444332 456778999999999887652 233444677777888888889999998
Q ss_pred HHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 582 FNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIE-MMPVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 582 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~-~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
+.+.. .+.| |+...+-|.++|-+.|+-.+|.+..- ....-| +..+..-|..-|....-.+.++..++++--+.|
T Consensus 581 ~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 87654 4555 58889999999999999999988643 333333 444444455555666667899999999999999
Q ss_pred CCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 659 DNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 659 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+.....++..+.+.|++..|.++++..-.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9888888889999999999999999887753
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.11 E-value=7.8e-08 Score=98.11 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=221.4
Q ss_pred HHHHHH--hcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhC
Q 047408 69 EIGRFC--EVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTC 145 (830)
Q Consensus 69 li~~~~--~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~ 145 (830)
+..++. -.|+|.+|.++..+....+..|. .|..-.++.-+.|+.+.+-+...++.+..-.+. ..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-LAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHhC
Confidence 444443 36999999999999888777775 777778888899999999999999988643444 66777778888999
Q ss_pred CChHHHHHHHhc---CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCCC
Q 047408 146 GDLKEGRRVFNK---IDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADS-------YTFSCVLKCLAVVGNSR 215 (830)
Q Consensus 146 g~~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~ 215 (830)
|+.+.|+.-.+. |..++...-....+.|.+.|++.+...++..|.+.|+-.|+ .+|..+++-+...+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~--- 243 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN--- 243 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc---
Confidence 999999887775 55678889999999999999999999999999999976654 35666666555444
Q ss_pred CHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAF 292 (830)
Q Consensus 216 ~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~ 292 (830)
..+.-...++..|. .++..--+++.-+.+.|+.++|.++..+-.+.+..|+- ..+-.+.+.++...-.+..+.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 34444556666663 45777778889999999999999999999988877772 223345556665554444444
Q ss_pred H-HHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 047408 293 A-LKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPD 367 (830)
Q Consensus 293 ~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 367 (830)
. .+.+-.| ..+.+|-..|.+.+.+.+|...|+.... ++..+|+-+..+|.+.|++.+|.+.+++-...-.+|+
T Consensus 320 ~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 320 WLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 4 3444344 6778899999999999999999987643 7888999999999999999999999888765433443
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=2.5e-08 Score=114.36 Aligned_cols=213 Identities=14% Similarity=0.027 Sum_probs=161.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CC-ChhhHHHHHHHHHhcCChHHHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AK-DLISWTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l 546 (830)
..++.++|...+..+++.. +.+...+..+...+...|++++|...|++.. .| +...|..+...|...|++++|+..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3456889999999998875 4577888889999999999999999999865 33 466888899999999999999999
Q ss_pred HHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 047408 547 FNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PV 623 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 623 (830)
|++..+ +.|+.. .+..++.++...|++++|...++..... ..|+ ...+..+..+|...|+.++|.+.++++ +.
T Consensus 395 ~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 395 INECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999998 567654 2334445566789999999999887643 2353 455777888999999999999999887 55
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 624 APDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 624 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
.|+. ..++.|...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+... +++.+.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 6654 44555555566666 5788878877764433333344488889999998888877 556543
No 59
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.1e-05 Score=90.84 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=119.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
...|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.+++-.+++...+++ .-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 457999999999999999999988442 34557999999999999999999999877654 5666554 57899
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
+|++.+++.|-++++. -||..-......-|...|.++.|..++.. .+.|..|+..+...|.+..|..-
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 57877788889999999999999888864 46788899999999999988876
Q ss_pred HHHHH
Q 047408 684 REKIS 688 (830)
Q Consensus 684 ~~~m~ 688 (830)
-++..
T Consensus 1243 aRKAn 1247 (1666)
T KOG0985|consen 1243 ARKAN 1247 (1666)
T ss_pred hhhcc
Confidence 54443
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.5e-07 Score=95.67 Aligned_cols=267 Identities=12% Similarity=0.019 Sum_probs=145.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHH
Q 047408 342 GYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMAD 421 (830)
Q Consensus 342 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 421 (830)
-+...+++.+.+++++...+. .++....+..-|.++...|+...-..+=..+++. .+....+|-++.--|.-.|+.++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 344445555555555554443 2233333333344444444433333333333332 23344555555555555566666
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCC-CCchhHHhHHH
Q 047408 422 AESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGI-SADRNVANAIV 500 (830)
Q Consensus 422 A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li 500 (830)
|++.|.....-|. .=...|.....+++..+..++|...+..+-+.-. ..-+..| +.
T Consensus 331 ARry~SKat~lD~---------------------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lg 387 (611)
T KOG1173|consen 331 ARRYFSKATTLDP---------------------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LG 387 (611)
T ss_pred HHHHHHHHhhcCc---------------------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HH
Confidence 6666655433221 1122344444555555555555555554444210 0112222 22
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---C-ChhHHHHHHHHHHc
Q 047408 501 DMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA--GIE---P-DEVSFISVLYACSH 571 (830)
Q Consensus 501 ~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---P-d~~t~~~ll~a~~~ 571 (830)
--|.+.++++-|.+.|.+.. ..|+...+-+....-..+.+.+|..+|+..+.. .+. + -..+++.|..+|.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 23666777777777776543 336666666666666677777888887776621 011 1 23356777777788
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCG 636 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~ 636 (830)
.+.+++|+..|+... -..| +..+|+++.-.|...|+++.|.+.|.+. .++||..+-..+|+.
T Consensus 468 l~~~~eAI~~~q~aL---~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKAL---LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HhhHHHHHHHHHHHH---HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 888888888877765 2333 5677777777777778888887777765 677777666666653
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=3.6e-08 Score=113.12 Aligned_cols=210 Identities=11% Similarity=0.050 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH---------hcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYV---------KCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~---------k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~ 539 (830)
+++++|.+.+..+++.. +.+...+..|...|. ..+++++|...+++.. ..+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 46788888888888754 234555666655544 2345889999998765 3467789999899999999
Q ss_pred hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRF 617 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~ 617 (830)
+++|+..|++..+ +.|+.. .+..+..++...|++++|...++... .+.|+. ..+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 567765 57777788999999999999999987 456653 2333445567778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 618 IEMMP--VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 618 ~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++.- ..|+ +..+..+...+...|+.++|+..++++....|++......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98862 2354 4556667777889999999999999999899998888888999999888 577776666554
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.4e-06 Score=88.90 Aligned_cols=347 Identities=14% Similarity=0.097 Sum_probs=219.3
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCC-CeehHHHHHHHHHhcCC-hhH--------------HHHHHHHHHHcC------
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGER-SVVSWTSMIAGYAREGV-FDG--------------AIRLFRGMVREG------ 363 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~-~~~--------------A~~l~~~m~~~g------ 363 (830)
--.+..|-..++-+.|.....+.+.. ...--|.|+.-+-+.|- -.+ |++.+.-..+.+
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~ 180 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEI 180 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhh
Confidence 44566677778888888888887763 33334444444333331 111 222222222222
Q ss_pred ---------CCCCcchHHHHHHHhh--ccCcchhhhhHHHHHHh-hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047408 364 ---------IEPDVYAITSILHACA--CDGLLEIGKDVHDYIKE-NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPV 431 (830)
Q Consensus 364 ---------~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 431 (830)
+.|+..+...-+.+++ ..++-..+.+.+..+.+ .-++.|+....++.+.|...|+.++|...|++...
T Consensus 181 ~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 181 NSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred hhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 2333334444444433 23444444444444443 34677889999999999999999999999999877
Q ss_pred CCchhHHHHHHHHHHHHHHHh-CC--C-----------CCccc---cccchhhhcchhhHHHHHHHHHHHHHhCCCCchh
Q 047408 432 KDIVSWNTMIGALDLFVAMLQ-NF--E-----------PDGVT---MACILPACASLAALERGREIHGYILRHGISADRN 494 (830)
Q Consensus 432 ~~~~~~n~~i~al~~f~~m~~-~~--~-----------pd~~t---~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 494 (830)
-|+.+-.+| ++|.-+.. +| . -+..| +..-+.......+.+.|..+-+..++.. +.+..
T Consensus 261 ~dpy~i~~M----D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~ 335 (564)
T KOG1174|consen 261 ANPDNVEAM----DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHE 335 (564)
T ss_pred CChhhhhhH----HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccch
Confidence 776554444 22222211 11 0 11111 1111222234455666666665555533 12233
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP--A-KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL-YACS 570 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~ 570 (830)
.+-.-...+...|+.++|.-.|+... . -+..+|.-++..|...|...||+-+-+...+. +.-+..+..-+. ..|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF 414 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence 33333456677899999999998654 3 47889999999999999999999888776653 333344444331 2332
Q ss_pred -ccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047408 571 -HSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAE 647 (830)
Q Consensus 571 -~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~ 647 (830)
....-++|+.+++.-. .+.|+ ....+.+..++.+.|+.+++..++++. ...||....+.|....+..+.+++|.
T Consensus 415 ~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred cCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 2334577888888754 66776 566777888899999999999999886 67889999999999999999999999
Q ss_pred HHHHHHhccCCCCc
Q 047408 648 KVAEHVFELEPDNT 661 (830)
Q Consensus 648 ~~~~~~~~l~p~~~ 661 (830)
..|..++.++|++-
T Consensus 492 ~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 492 EYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHhcCccch
Confidence 99999999999874
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.4e-06 Score=95.91 Aligned_cols=375 Identities=18% Similarity=0.130 Sum_probs=242.3
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAIT 372 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 372 (830)
..+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|....|+.++++-....-.|+..+-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888889999999999999999999998654 345679999999999999999999998876543335544443
Q ss_pred HHHH-Hhh-ccCcchhhhhHHHHHHhhc--C--CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH----
Q 047408 373 SILH-ACA-CDGLLEIGKDVHDYIKEND--M--QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG---- 442 (830)
Q Consensus 373 ~ll~-a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~---- 442 (830)
.+.. .|. +.+.+++|..+-..++... . ......+-.+.-+|...-. ...+|+--..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSERDALHKK 462 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHHHHHHHHH
Confidence 3333 343 4567777777776666521 1 1112333334334432210 0001111000
Q ss_pred HHHHHHHHHhCC--CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC
Q 047408 443 ALDLFVAMLQNF--EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 443 al~~f~~m~~~~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 520 (830)
++..+++-.+-+ .|+..-|.++ -++..++++.|.+...+..+.+-..+...+.-|.-.+.-.+++.+|..+.+...
T Consensus 463 slqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 334444443333 4444444333 346677889999999988888667788888888888888899999988887542
Q ss_pred C--CC---------------------hhhHHHHHHHHH-----------------------hcCChHHHHHHHHHHH---
Q 047408 521 A--KD---------------------LISWTIMIAGYG-----------------------MHGFGCDAIATFNDMR--- 551 (830)
Q Consensus 521 ~--~d---------------------~~~~~~li~~~~-----------------------~~g~~~~A~~l~~~m~--- 551 (830)
. ++ +.|...++...- .+++..+|.+..++..
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 1 11 111111111111 0112222222222211
Q ss_pred -----HcC---------CC--CChh------HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc
Q 047408 552 -----QAG---------IE--PDEV------SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRT 608 (830)
Q Consensus 552 -----~~g---------~~--Pd~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~ 608 (830)
..| +. |+.. .+......+...+..++|+..+.+.. ++.|- ...|.-....+...
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHH
Confidence 011 11 2211 12233355667777788876665554 44453 45666677888899
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 609 GNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEK--VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 609 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
|+++||.+.|... .+.|| +.+..+|...+...|+-..|+. +...+++++|.++.+|..|+.++-+.|+.++|.+-+
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999988775 77886 5688889889999999888888 999999999999999999999999999999999998
Q ss_pred HHHHh
Q 047408 685 EKISR 689 (830)
Q Consensus 685 ~~m~~ 689 (830)
....+
T Consensus 778 ~aa~q 782 (799)
T KOG4162|consen 778 QAALQ 782 (799)
T ss_pred HHHHh
Confidence 87654
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=2.2e-05 Score=84.80 Aligned_cols=328 Identities=16% Similarity=0.193 Sum_probs=161.0
Q ss_pred CcchhHHHHHHHhcCChHHHHHHHHHhhcCCCCh---hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHH
Q 047408 63 TKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDT---KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLV 139 (830)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li 139 (830)
+..|-.-+..+..+|+.......|++.+..=|-. ..+...++-..+.+-++.+..++++-++-. +...+-.|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHHH
Confidence 3445555555555555555555555544332211 144444444444444555555555554421 22234445
Q ss_pred HHHHhCCChHHHHHHHhcCC--------------------------------------------CC--C--cchHHHHHH
Q 047408 140 FMFVTCGDLKEGRRVFNKID--------------------------------------------NG--K--VFIWNLLMH 171 (830)
Q Consensus 140 ~~y~~~g~~~~A~~~f~~m~--------------------------------------------~~--~--~~~~~~li~ 171 (830)
.-+++.+++++|.+.+..+. .+ | -..|++|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 55555555555544444332 11 1 146788888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC------CCCcchHHHHHHHHHhC
Q 047408 172 EYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS------DRDVVSWNCMISGYIAN 245 (830)
Q Consensus 172 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~------~~~~~~~n~li~~~~~~ 245 (830)
-|.+.|.++.|.++|++.... ...+.-|+.+.++|+.... -.-+.++ + +. +.+.+.+
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE---~~~~~~m-e-~a~~~~~n~ed~~dl---------- 319 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEE---SCVAAKM-E-LADEESGNEEDDVDL---------- 319 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHH---HHHHHHH-h-hhhhcccChhhhhhH----------
Confidence 888888888888888776553 2344456666666654321 0000000 0 00 1111211
Q ss_pred CChhHHHHHHHHHHHCC----------CCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-----CCCCchHHHHHH
Q 047408 246 GVAEKGLEVFKEMLNLG----------FNV-DLATMVTVLSGCANCGALMFGRAVHAFALKAC-----FSKEISFNNTLL 309 (830)
Q Consensus 246 g~~~~A~~l~~~m~~~g----------~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-----~~~~~~~~~~Li 309 (830)
+-.+.-|+.+...+ -.| +..++..-++. ..|+..+-...+..+++.- ...-...|..+.
T Consensus 320 ---~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 320 ---ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred ---HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 22233333333221 011 12222222221 1233444444555555431 112234577888
Q ss_pred HHhhcCCChHHHHHHHhhcCCCCe-------ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccC
Q 047408 310 DMYSKCGDLDGAIRVFEKMGERSV-------VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDG 382 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 382 (830)
+.|-..|+++.|+.+|++...-+- ..|......=.+..+++.|+.+.+.... .|.... +..+ ..+
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~y-d~~ 466 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYY-DNS 466 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhh-cCC
Confidence 999999999999999998866332 2455555555667778888887766543 233211 1111 111
Q ss_pred cchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch
Q 047408 383 LLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIV 435 (830)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~ 435 (830)
. -+-.. +-.+..+|.-+++.--.+|-++....+++.+.+.-+.
T Consensus 467 ~-----pvQ~r-----lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 467 E-----PVQAR-----LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred C-----cHHHH-----HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 1 00000 1123445666666666666677777777666554433
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.98 E-value=2.8e-07 Score=101.01 Aligned_cols=246 Identities=17% Similarity=0.203 Sum_probs=129.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHhhcCC----------CCee-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchH
Q 047408 303 SFNNTLLDMYSKCGDLDGAIRVFEKMGE----------RSVV-SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI 371 (830)
Q Consensus 303 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~----------~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 371 (830)
.+..-|..+|...|+++.|..+|....+ +.+. .-+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 3444577777777777777777765432 1221 2233556677777888888887777541
Q ss_pred HHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 047408 372 TSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAML 451 (830)
Q Consensus 372 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~ 451 (830)
.....-...+.-..+++.|...|.+.|++++|...+++. ++++.+.
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A--------------l~I~~~~- 316 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA--------------LEIYEKL- 316 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH--------------HHHHHHh-
Confidence 000000001112346677778899999999999887652 2222220
Q ss_pred hCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCC-CCc-hhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHH
Q 047408 452 QNFEPDGVTMACILPACASLAALERGREIHGYILRHGI-SAD-RNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTI 529 (830)
Q Consensus 452 ~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~ 529 (830)
.|. .+. ....+.++..|...+++++|..+++.
T Consensus 317 -----------------------------------~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~----------- 350 (508)
T KOG1840|consen 317 -----------------------------------LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK----------- 350 (508)
T ss_pred -----------------------------------hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH-----------
Confidence 110 111 11223344445555555555555532
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCCC-cchHH
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDE----VSFISVLYACSHSGLVDEGWRFFNMMRYEC-----NIEPK-LEHYA 599 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~y~ 599 (830)
|++++... +.++. -++..+...+-+.|.+++|.++|++..+.. +..+. ..+++
T Consensus 351 -------------al~i~~~~----~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 351 -------------ALKIYLDA----PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred -------------HHHHHHhh----ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 11111100 11222 134444444444444444444444433221 11111 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM--------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
-|...|.+.++.++|.++|.+. |..|+. .+|..|...|+..|++|.|+++.++++
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5555566666666665555543 345554 678888888888889888888888776
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=7.8e-08 Score=97.33 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=136.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIH 481 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 481 (830)
....+..+...|.+.|++++|...|++....+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------ 61 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------------------------------ 61 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 34566777788888888888888777653221
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 482 GYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
+.+...+..+...|...|++++|.+.|++.. ..+...|..+...|...|++++|++.|++.......|.
T Consensus 62 --------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 62 --------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 2234455666677777777777777777554 33455677777778888888888888888876432232
Q ss_pred -hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047408 559 -EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLL 634 (830)
Q Consensus 559 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll 634 (830)
...+..+...+...|++++|.+.|+.... ..|+ ...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 210 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGI 210 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 23455566677788888888888887763 2343 556777888888888888888888775 2223 455666667
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCC
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
..+...|+.+.|....+.+.+..|
T Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 211 RIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCc
Confidence 777888888888888777765543
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.97 E-value=6e-07 Score=91.80 Aligned_cols=283 Identities=12% Similarity=0.054 Sum_probs=158.8
Q ss_pred CCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHH
Q 047408 315 CGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVH 391 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 391 (830)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.|-.++.+..+.--.++...+.+........|+...|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4889999888877544 2334455555666677899999999888876422333444455555677888888888888
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcch
Q 047408 392 DYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASL 471 (830)
Q Consensus 392 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~ 471 (830)
..+.+.+ +.+..+.......|.+.|++.+...+...+.+.++.+-.-+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~------------------------------- 224 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA------------------------------- 224 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-------------------------------
Confidence 8888777 55677888899999999999999999888877654321111
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
.++ ...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..
T Consensus 225 ------~~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 225 ------ARL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred ------HHH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 000 11223333333333333333333444444 2245555566666667777777777777
Q ss_pred HHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047408 549 DMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA 627 (830)
Q Consensus 549 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~ 627 (830)
+-.+.+..|+-.+ +..|.+-++...=.+..+.-.+.++-.| ..+.+|..+|.+.+.|.+|.+.|+.. +..|+.
T Consensus 288 ~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 288 DALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 7777666666222 2233444444443333333333333333 33334444444444444444444432 334444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
..|+-+..++...|+.++|..+.++
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444444444444444444444433
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.96 E-value=3e-07 Score=91.07 Aligned_cols=293 Identities=16% Similarity=0.169 Sum_probs=168.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhc-CCC--chhhHHHHHHHHHhcCChHH
Q 047408 346 EGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKEND-MQS--SLYVSNALMDMYAKCGSMAD 421 (830)
Q Consensus 346 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~ 421 (830)
+.++++|+++|-+|.+. .|. ..+-.+|-+.+.+.|..+.|..+|..+.+.- +.. -..+...|..=|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46778888888888763 122 2223455556777788888888887776542 111 12344567778889999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc----hhHHh
Q 047408 422 AESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISAD----RNVAN 497 (830)
Q Consensus 422 A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~ 497 (830)
|+.+|..+.+.+... ....--++..|-...++++|..+-..+.+.+-.+. ...|.
T Consensus 126 AE~~f~~L~de~efa---------------------~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 126 AEDIFNQLVDEGEFA---------------------EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHhcchhhh---------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 999998876643321 22333456666677777777777777777654332 22344
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHcc
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPAKDL---ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHS 572 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~ 572 (830)
-|...+.-..+++.|..++.+..+-|. -.=-.+...+...|++..|++.++...+. .|+.+ +...|..+|.+.
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHh
Confidence 455555555667777777766543222 22222334556667777777777777664 34433 455566666777
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRF-IEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
|+.+++..++..+.+ ..+..+.-..|.+......-.++|... .+...-+|+...+..|+..-..
T Consensus 263 g~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~------------ 327 (389)
T COG2956 263 GKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA------------ 327 (389)
T ss_pred CCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc------------
Confidence 777777766666552 234444444444444433344444433 2334445555544444432111
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCc
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPG 697 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~ 697 (830)
=+..|+|.+...+.+.|....++..|.
T Consensus 328 -------------------daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 328 -------------------DAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred -------------------cccccchhhhHHHHHHHHHHHHhhcCC
Confidence 123355777777777777666666554
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.2e-06 Score=91.30 Aligned_cols=404 Identities=10% Similarity=0.037 Sum_probs=235.2
Q ss_pred hHHHHHHHhcCChHHHHHHHHHhhcCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhC
Q 047408 67 NAEIGRFCEVGNLEKAMEVLYSSEKSKID-TKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTC 145 (830)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~ 145 (830)
-..-.-+-++|++++|+..|.......|+ |.-|.....+|...|+++...+--...++ +.|+-+-++..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 34445678999999999999999999888 77888888888899999988887777776 4455455566666677778
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHH---------HHHcC--CCCCcccHHHHHHHHHhcCCC
Q 047408 146 GDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKK---------MQSLG--IAADSYTFSCVLKCLAVVGNS 214 (830)
Q Consensus 146 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~~g--~~p~~~t~~~ll~~~~~~g~~ 214 (830)
|++++|+. | +|-..+..++..+.-..-+.+++.+ |.+.+ +-|+.....+.+..+...-.
T Consensus 197 g~~~eal~--D-------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~- 266 (606)
T KOG0547|consen 197 GKFDEALF--D-------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK- 266 (606)
T ss_pred ccHHHHHH--h-------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc-
Confidence 88887743 2 2223333333333222233333332 11111 22333333333322211000
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHH----h-CCChhHHHHHHHHHHHC-CCCCChh---------hHHHHHHH--H
Q 047408 215 RRVKDAHKLFDELSDRDVVSWNCMISGYI----A-NGVAEKGLEVFKEMLNL-GFNVDLA---------TMVTVLSG--C 277 (830)
Q Consensus 215 ~~~~~A~~lf~~m~~~~~~~~n~li~~~~----~-~g~~~~A~~l~~~m~~~-g~~pd~~---------t~~~ll~a--~ 277 (830)
.. +..+...+.-.+..++- . ...+..|.+.+.+-... -..++.- .-..++.+ .
T Consensus 267 -------~~---~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 267 -------PL---FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred -------cc---ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 00 00000011111111111 0 01223333333221110 0001100 11112222 2
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHH
Q 047408 278 ANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIR 354 (830)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~ 354 (830)
.-.|+.-.+.+-++.+++....++. .|--+..+|....+.++-.+.|+.... .|..+|..-...+.-.+++++|+.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 2356777777777777776543332 255666778888888999999987754 345566666666666778899999
Q ss_pred HHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 047408 355 LFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKD 433 (830)
Q Consensus 355 l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 433 (830)
=|++.+.. .|+ .+.|.-+--+.-+.+.+++....|+..++. ++.-+.+||-....+...+++++|.+.|+...+..
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99988763 443 445666655666788899999999988765 57778899999999999999999999998754321
Q ss_pred c----h--hHHHHHH-HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 047408 434 I----V--SWNTMIG-ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC 506 (830)
Q Consensus 434 ~----~--~~n~~i~-al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 506 (830)
. + .-..+|. |+-++ --.+++..|.++...+++..- -....+-.|..+-.+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~---------------------qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL---------------------QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQR 550 (606)
T ss_pred cccccccccchhhhhhhHhhh---------------------chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHH
Confidence 1 1 1111111 11111 123788889999888887552 2345666677777777
Q ss_pred CCHHHHHHHhhh
Q 047408 507 GVLVLARSLFDM 518 (830)
Q Consensus 507 g~~~~A~~~f~~ 518 (830)
|++++|.++|++
T Consensus 551 ~~i~eAielFEk 562 (606)
T KOG0547|consen 551 GKIDEAIELFEK 562 (606)
T ss_pred hhHHHHHHHHHH
Confidence 777777777743
No 70
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=4.4e-05 Score=83.13 Aligned_cols=259 Identities=17% Similarity=0.168 Sum_probs=166.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHH
Q 047408 342 GYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMAD 421 (830)
Q Consensus 342 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 421 (830)
+-....++.+|+.+++.++.... -.--|..+..-|+..|+++.|+++|-+. ..++--|+||.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34445556666666665554322 2223444555566666666666655432 123445666666666666
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHH
Q 047408 422 AESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVD 501 (830)
Q Consensus 422 A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 501 (830)
|.++-.+...+ +.....|-+-..
T Consensus 810 a~kla~e~~~~---------------------------------------------------------e~t~~~yiakae 832 (1636)
T KOG3616|consen 810 AFKLAEECHGP---------------------------------------------------------EATISLYIAKAE 832 (1636)
T ss_pred HHHHHHHhcCc---------------------------------------------------------hhHHHHHHHhHH
Confidence 66655443322 223344444555
Q ss_pred HHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHH
Q 047408 502 MYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGW 579 (830)
Q Consensus 502 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~ 579 (830)
-.-+.|++.+|.+++-.+..||. .|..|-++|..++.+.+.++- .||.. |-..+..-+...|++.+|.
T Consensus 833 dldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 833 DLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred hHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHH
Confidence 56678999999999988888875 478899999999999888763 45543 6666777788899999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC---CC-CHHHHHHH------HHHHHhcCCHHHHHHH
Q 047408 580 RFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPV---AP-DATIWGSL------LCGCRIHHEVKLAEKV 649 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~---~p-~~~~~~~l------l~~~~~~g~~~~a~~~ 649 (830)
+.|-... -|.+-|++|-.+|.|++|..+-+.-+- +. -...|.-- ...+.+||-++.|...
T Consensus 903 ~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~ 972 (1636)
T KOG3616|consen 903 EHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF 972 (1636)
T ss_pred HHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence 8886653 367889999999999999998876531 11 12445422 2345677777777653
Q ss_pred H------HHHhc-----cCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 650 A------EHVFE-----LEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 650 ~------~~~~~-----l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+ +-+++ ....-+..++.++--+...|++++|.+-+-+..
T Consensus 973 a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred hhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 2 22222 223345678888888999999999977655443
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=5.8e-08 Score=101.97 Aligned_cols=211 Identities=14% Similarity=0.052 Sum_probs=150.1
Q ss_pred hhHHHHHHHHHHHHHhC-CCC--chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 047408 472 AALERGREIHGYILRHG-ISA--DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIA 545 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 545 (830)
+..+.+..-+..++... ..+ ....+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 222 24567788888999999999999998764 3467899999999999999999999
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 047408 546 TFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--P 622 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~ 622 (830)
.|++..+ +.|+.. ++..+..++...|++++|.+.|+.... ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 678754 677788888899999999999998873 4565432233333455678899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------ccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 623 VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVF-------ELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 623 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..|+...|. + .....|+...+ ..++.+. ++.|+.+..|..|+.+|...|++++|...+++..+.+
T Consensus 195 ~~~~~~~~~-~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGWN-I--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHHH-H--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233332231 2 22234444333 2333332 4566777889999999999999999999998877533
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=2.5e-06 Score=92.46 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=66.7
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 216 ~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
.+.+|..+|-+-.. -..-|..|....++++|+.+-+. .|.+.-...-.+.++++...|.-+.+-++-
T Consensus 546 kfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----- 612 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----- 612 (1636)
T ss_pred hhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc-----
Confidence 46677776654211 12234455555556666655332 122222222334455555555444433321
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhh--cCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEK--MGERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~--m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
..+-. .-+-|..|.|.|.+..|.+.-.. -...|......+..++.+...+++|-++|+++.
T Consensus 613 ---~sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 613 ---ESDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred ---cccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11111 24568889999998888765422 122355555556666667667777777777664
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=1e-07 Score=90.27 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVD 603 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~ 603 (830)
+...+..+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ .++.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 344566789999999999999999988 677776 78888888999999999999998877 56774 678888889
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
-|+..|++++|...|++.-..|+ ..+|..+..+-.+.|+.+.|+..+++.++++|+++.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998733333 46788888877889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 047408 680 VKKLREKISRRGL 692 (830)
Q Consensus 680 A~~~~~~m~~~g~ 692 (830)
|.-.++....+|.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988877665
No 74
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=3.4e-06 Score=83.78 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=165.4
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhC-CCCc--hhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHG-ISAD--RNVANAIVDMYVKCGVLVLARSLFDMIPAKDL---ISWTIMIA 532 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~ 532 (830)
.+-.++-+-+-+.|..+.|..+|.-+.++. .+.+ ....-.|..=|.+.|-+|.|+.+|..+...+. ...-.++.
T Consensus 70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~ 149 (389)
T COG2956 70 EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 344456677778899999999999988743 2211 34455678889999999999999999876444 35566899
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEVS----FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR 607 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r 607 (830)
.|-+..++++|++.-+++.+.|-++..+- |.-+........+++.|+..+....+ ..|+ +..--.+.+.+..
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELA 226 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHh
Confidence 99999999999999999999776666652 45556666777899999999988763 3454 4445567889999
Q ss_pred cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHH
Q 047408 608 TGNLSEAYRFIEMM-PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKK 682 (830)
Q Consensus 608 ~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~ 682 (830)
.|+++.|.+.++.. .-.|+ +.+...|..+|.+.|+.++++..+.++.+..|... .-..|..+-....-.++|..
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~ 303 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQA 303 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHH
Confidence 99999999999887 34555 35788899999999999999999999999888754 33444444443333344433
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=8.6e-05 Score=79.80 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=118.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCCCC-hhhHHHHHHHH-H-hcCChHHHHHHHHHHHHcCCCCChhH--HHHHHHHHH
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPAKD-LISWTIMIAGY-G-MHGFGCDAIATFNDMRQAGIEPDEVS--FISVLYACS 570 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d-~~~~~~li~~~-~-~~g~~~~A~~l~~~m~~~g~~Pd~~t--~~~ll~a~~ 570 (830)
-++|+.+|. +..+.++++-...+..- ...+.+++... - +...+.+|.+++...-+. .|+... ....+.-..
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 356677765 45677788777776433 33444444332 2 223577888888777663 455533 333344567
Q ss_pred ccCCHHHHHHHHH--------HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHH
Q 047408 571 HSGLVDEGWRFFN--------MMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--------PVAPDA-TIWGSL 633 (830)
Q Consensus 571 ~~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~l 633 (830)
..|+++.|.+++. ... .+.-.+.+.+.++.+|.+.+.-+-|.+++.+. +-++.. .+|.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7899999999988 443 22233466778899999888766565555543 333322 344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
..--.++|+-++|...++++++..|++....+.++-.|++.. .+.|..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 444467799999999999999999999999999999998753 4555554
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.82 E-value=9.2e-07 Score=92.91 Aligned_cols=209 Identities=11% Similarity=-0.071 Sum_probs=150.4
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
.+......+...|+.++|...+..+++.. +.+...++.+...|...|++++|...|++.. ..+...|..+...+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35555566778899999999999998865 4568899999999999999999999999875 3356788999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH--H
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE--A 614 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e--A 614 (830)
.|++++|++.|++..+ ..|+.......+..+...++.++|.+.|..... ...|+... ..++..+ .|++.+ +
T Consensus 145 ~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~~~--lg~~~~~~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVEFY--LGKISEETL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHHHH--ccCCCHHHH
Confidence 9999999999999998 567665322222334567889999999976543 23343322 2344333 455433 3
Q ss_pred HHHHHh-CCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-CCcchHHHHHHHHhhhcC
Q 047408 615 YRFIEM-MPV----AP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP-DNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 615 ~~~~~~-m~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~ 676 (830)
.+.+.+ ... .| ....|..|...+...|+.++|+..++++++++| +...+-..+..+....++
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 333332 121 22 236899999999999999999999999999997 555555555555444333
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=1.9e-07 Score=92.28 Aligned_cols=224 Identities=11% Similarity=0.036 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHH
Q 047408 406 SNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYIL 485 (830)
Q Consensus 406 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 485 (830)
-+-+..+|.+.|.+.+|.+.|+.-.+. .|-..|
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q----------------------~~~~dT------------------------- 258 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ----------------------FPHPDT------------------------- 258 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc----------------------CCchhH-------------------------
Confidence 356778888888888888888765433 233333
Q ss_pred HhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-H
Q 047408 486 RHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AK-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-S 561 (830)
Q Consensus 486 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t 561 (830)
+-.|-..|-+-.+.+.|..+|.+-. .| |+....-+...+-..++.++|+++|+...+ ..|+.+ .
T Consensus 259 ----------fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEa 326 (478)
T KOG1129|consen 259 ----------FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEA 326 (478)
T ss_pred ----------HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCcccee
Confidence 3344455555555555555555443 12 333333344555556666666666666665 344444 3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM---PVAPD--ATIWGSLLCG 636 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~ 636 (830)
..++...+...+..+-|+.+++++.+- |+. +.+.|..+.-.+.-++++|-++.-|++. .-.|+ ..+|-.|...
T Consensus 327 iAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 327 IACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred eeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 444555566666666777766666532 432 3455666665566666777666666654 12344 4688888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
....||+..|.+.++-++..+|++...++.|+-+-.+.|+.++|..++...++.
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888999999999999999999999999999999999999999999999888763
No 78
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4e-05 Score=76.92 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=120.0
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
-+.|.+++--+++. -|. ..-.|+--|.+.+++.+|..+.+++... .|-.+.+-.
T Consensus 270 gEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----------------------tP~EyilKg 323 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT----------------------TPYEYILKG 323 (557)
T ss_pred CccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC----------------------ChHHHHHHH
Confidence 34455555444433 122 2334666789999999999998876432 132222222
Q ss_pred chhh-----hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 047408 464 ILPA-----CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHG 538 (830)
Q Consensus 464 ll~a-----~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 538 (830)
+..+ ..+...+.-|.+.+..+-.++...|+. .--.+|.+.+.-..
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI------------------------------pGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTI------------------------------PGRQSMASYFFLSF 373 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc------------------------------cchHHHHHHHHHHH
Confidence 2221 122223444555555554444443322 22333444444445
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
++++.+-.++....- +.-|.+--..+..|....|.+.+|.++|-.+.. -.++-+......|...|.+.|+.+-|++++
T Consensus 374 qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 555555555555543 222333333455667777777777777765541 122222222334556777888888888888
Q ss_pred HhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhccCCC
Q 047408 619 EMMPVAPDATIWGSLLC-GCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 619 ~~m~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
-++....+..+..-|+. -|.+.+.+=-|-+++..+-.++|.
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 77764445555555543 477888887788888877777776
No 79
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.66 E-value=6.6e-05 Score=85.05 Aligned_cols=557 Identities=13% Similarity=0.060 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 047408 114 DGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQ 190 (830)
Q Consensus 114 ~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 190 (830)
.+..++..+....+.++-...+..|...|...-+...|.+.|+..- ..++.+|.....-|++..++++|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3444455555544555545678888888888778888888888654 3466788888889999999998888732222
Q ss_pred HcC-CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047408 191 SLG-IAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDEL---SDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVD 266 (830)
Q Consensus 191 ~~g-~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m---~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 266 (830)
+.. ...-...|..+--.+...+ ....|..-|+.. .+.|...|..+..+|...|++..|+++|.+... +.|+
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~---n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAH---NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred hhchHHHHHhhhhhccccccCcc---chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 110 0000011111111111222 345555555543 356888999999999999999999999988765 3454
Q ss_pred hhhHHHHHHH--HhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcC-------CChHHHHHHHhhcCCCCeehHH
Q 047408 267 LATMVTVLSG--CANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKC-------GDLDGAIRVFEKMGERSVVSWT 337 (830)
Q Consensus 267 ~~t~~~ll~a--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~-------g~~~~A~~~f~~m~~~d~~~~~ 337 (830)
. +|.-...+ -+..|....+....+.++..- ..-....+.|...+.++ |-...|...|+.-. ..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~ 702 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFI 702 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHH
Confidence 3 33333332 234566666666666655321 11111122333333322 22233333333221 1111
Q ss_pred H-HHHHHHhcC----ChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcc---h---hhhhHHHHHHhhcCCCchhhH
Q 047408 338 S-MIAGYAREG----VFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLL---E---IGKDVHDYIKENDMQSSLYVS 406 (830)
Q Consensus 338 ~-li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~ 406 (830)
. ++...+... -...|..+|-... .. .|+......+..-.-..+.. + .|-+.+ .....+..+...|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccchH
Confidence 1 111111000 0123344444432 11 22222222222212222222 1 011111 1111122234444
Q ss_pred HHHHHHHHh----cCC----hHHHHHHHhcC---CCCCchhHHHHHH---------HHHHHHHHHhCCCCCccccccchh
Q 047408 407 NALMDMYAK----CGS----MADAESVFNQM---PVKDIVSWNTMIG---------ALDLFVAMLQNFEPDGVTMACILP 466 (830)
Q Consensus 407 ~~Li~~y~k----~g~----~~~A~~~f~~m---~~~~~~~~n~~i~---------al~~f~~m~~~~~pd~~t~~~ll~ 466 (830)
..|+.-|.+ +|. ...|...+..- ...+...||++=. |--.|-+-....+-...+|..+--
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccce
Confidence 444444433 332 23455555543 3567788887643 222232222233567778888888
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhC-----C---CCChhhHHHHHHHHHhcC
Q 047408 467 ACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMI-----P---AKDLISWTIMIAGYGMHG 538 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-----~---~~d~~~~~~li~~~~~~g 538 (830)
.|....+++.|.+.+....... +.|..-|-...-.-...|+.-++..+|..- . .++..-|-.-..-..++|
T Consensus 859 L~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng 937 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG 937 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc
Confidence 8899999999999999887644 334444433333345567777888887641 1 345666666666667788
Q ss_pred ChHHHHHHHHHHHH---------cCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHH----HHHH
Q 047408 539 FGCDAIATFNDMRQ---------AGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACM----VDLL 605 (830)
Q Consensus 539 ~~~~A~~l~~~m~~---------~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----v~~l 605 (830)
+.++-+..-+..-. .|.+-+...|....+...|.+.+.++.+...+...-...+-+...|+.. ..++
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 87766655544432 1334445678888888888888888877766654222223344555533 3445
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH---HHHhhhcCHHHHHH
Q 047408 606 SRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA---NVYAEAEKWEEVKK 682 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~---~~y~~~g~~~~A~~ 682 (830)
...|.++.|..-+...+.+-|..+-.+-++. .-.|+++.+...+++++.+.-++...-+++. .....+|.-+.|..
T Consensus 1018 lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1018 LSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 5678888877777666666666655555555 4467899999999999887665554333333 33445555666665
Q ss_pred HHHHH
Q 047408 683 LREKI 687 (830)
Q Consensus 683 ~~~~m 687 (830)
..-+.
T Consensus 1097 lLfe~ 1101 (1238)
T KOG1127|consen 1097 LLFEV 1101 (1238)
T ss_pred HHHHH
Confidence 54333
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=6.6e-07 Score=95.54 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=175.5
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 047408 469 ASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIA 545 (830)
Q Consensus 469 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 545 (830)
.+.|++.+|.-.|+..++.. +.+...|--|...-+..++-..|+..+.+.. ..|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46688888988899888876 5578888888888888888888888888654 4467778888889999999999999
Q ss_pred HHHHHHHcCCCCChhH---------HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 546 TFNDMRQAGIEPDEVS---------FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~t---------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
.++.-+... |-.+- +..- ....+...+....++|-.+....+..+|.+.+.+|.-+|--.|.+++|.+
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999886632 11110 0000 12223334556677887777777777889999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 617 FIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 617 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.|+.. ..+| |...||-|...+....+.++|+.+|.+++++.|.-......|+--|...|.++||.+.+-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99987 7788 5689999999999999999999999999999999999999999999999999999998765543
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=5.6e-05 Score=75.89 Aligned_cols=449 Identities=15% Similarity=0.150 Sum_probs=251.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCh-h-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCC
Q 047408 70 IGRFCEVGNLEKAMEVLYSSEKSKIDT-K-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGD 147 (830)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~m~~~~~~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~ 147 (830)
+.-+..+.++..|+.+++.-...+-.. + +-.-+..++...|++++|...+..+.... .++ ..++-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~-~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAP-AELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCC-cccchhHHHHHHHHHH
Confidence 566677888999999988765443322 2 33334455568899999999998887743 334 5566556666666788
Q ss_pred hHHHHHHHhcCCCCCcchHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhh
Q 047408 148 LKEGRRVFNKIDNGKVFIWNL-LMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDE 226 (830)
Q Consensus 148 ~~~A~~~f~~m~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~ 226 (830)
+.+|..+-...++ ....+. |...--+.++-++-..+...+... .-|..+..++ .|.+. ..++|..++.+
T Consensus 107 Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsv--hYmR~----HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASV--HYMRM----HYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHH--HHHHH----HHHHHHHHHHH
Confidence 8899888776543 223333 334444556655555555544431 1122222211 22333 37889999888
Q ss_pred CCC--CCcchHHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCC
Q 047408 227 LSD--RDVVSWNCMI-SGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCG--ALMFGRAVHAFALKACFSKE 301 (830)
Q Consensus 227 m~~--~~~~~~n~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~~~~l~~~~~~~g~~~~ 301 (830)
... |+-...|.-+ -+|.+..-++-+.+++.--++. .||. |+..-|.+|.... +-+.+.+-...+.+.+-..-
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 754 5555666544 4667788888888888777664 3443 4555556664332 22222222222222221111
Q ss_pred chHHHHHH-HHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHh--
Q 047408 302 ISFNNTLL-DMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHAC-- 378 (830)
Q Consensus 302 ~~~~~~Li-~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-- 378 (830)
++. .-|+ .-+.-...-+.|++++-.+...=+..--.++--|.+.++..+|..+.+++.- ..|-++..-.+..+.
T Consensus 254 ~f~-~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 254 PFI-EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred hhH-HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 111 1111 1111113345666665444332222333455568888999999988777532 334343333333221
Q ss_pred ---hccCcchhhhhHHHHHHhhcCCCchhhH-HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC
Q 047408 379 ---ACDGLLEIGKDVHDYIKENDMQSSLYVS-NALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 379 ---~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~ 454 (830)
.....+..|.+.|..+-..+.+-|.... .++...+.-..++|+....++.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS-------------------------- 384 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS-------------------------- 384 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 1222355566666666666555544332 2222322222333333322222
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMI 531 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li 531 (830)
+...-...|.+.+| +.++++..|...+|+++|-.+..+ |-.+|-+|+
T Consensus 385 -----------------------------i~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 385 -----------------------------IESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSML 434 (557)
T ss_pred -----------------------------HHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHH
Confidence 22222223444444 778888889999999999887644 566776654
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHccCCHHHHHHHHHHhHhhcCCCCCcchH
Q 047408 532 -AGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL-YACSHSGLVDEGWRFFNMMRYECNIEPKLEHY 598 (830)
Q Consensus 532 -~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 598 (830)
.+|.++|+++-|.++|-++. -..+..+...++ .-|.+.+.+--|-+.|+.+. .+.|+++.|
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 57888899998888766554 233445555554 66888888888888888876 567777665
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.9e-05 Score=77.98 Aligned_cols=253 Identities=15% Similarity=0.071 Sum_probs=163.9
Q ss_pred hhhHHHHHHHHHHHHH-hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHH---HHHHHh----------
Q 047408 471 LAALERGREIHGYILR-HGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIM---IAGYGM---------- 536 (830)
Q Consensus 471 ~~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~---------- 536 (830)
.++...+.+.+..+.+ .-++.|+....++.+.|...|+.++|...|++...-|+.+..+| ...+.+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 3444555555555544 45677889999999999999999999999997664433322222 111223
Q ss_pred ------------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 047408 537 ------------------------HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNI 591 (830)
Q Consensus 537 ------------------------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 591 (830)
.++++.|+.+-++-++ +.|+.+ .+..=..++...|++++|.-.|+..+ .+
T Consensus 289 ~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~L 363 (564)
T KOG1174|consen 289 MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ---ML 363 (564)
T ss_pred HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHH---hc
Confidence 3445555555555554 455554 34444466788899999999999886 67
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHH----HhCCCCCCHHHHHHHHHH--HH-hcCCHHHHHHHHHHHhccCCCCcch
Q 047408 592 EP-KLEHYACMVDLLSRTGNLSEAYRFI----EMMPVAPDATIWGSLLCG--CR-IHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 592 ~p-~~~~y~~lv~~l~r~g~~~eA~~~~----~~m~~~p~~~~~~~ll~~--~~-~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.| +.+.|.-|+..|...|++.||.-+- +.|| .++.+. +|+++ |. ...--|+|...+++.+.++|.-.++
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~L-tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSL-TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhh-hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 76 6899999999999999999987554 3343 223332 23321 21 2223577888888888888888888
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEE-----------EECCEEEEEEeCCcCCCChhHHHHHHHHHHH
Q 047408 664 YVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWI-----------EIKGKVNIFVAGGSSHPHAKKIESLLKRLRL 732 (830)
Q Consensus 664 ~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi-----------~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~ 732 (830)
-+.++.++...|+.+++..+++.-.. ..|.++.- +.+....-|...-+.+|+++...+-|++|.+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 88888888888888888887665432 22222210 0011111133444678999988888888887
Q ss_pred HHH
Q 047408 733 EMK 735 (830)
Q Consensus 733 ~~~ 735 (830)
+|+
T Consensus 517 ~~~ 519 (564)
T KOG1174|consen 517 SDD 519 (564)
T ss_pred ccC
Confidence 776
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.0027 Score=72.36 Aligned_cols=491 Identities=15% Similarity=0.204 Sum_probs=274.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC--CCcchHHHHHHHHHh
Q 047408 167 NLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD--RDVVSWNCMISGYIA 244 (830)
Q Consensus 167 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~--~~~~~~n~li~~~~~ 244 (830)
+..+.+|+..|+++++.-.. .+.|..||. ..+|+...+. ..+.+.++...|++ +...-.+.+...+..
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r~----sPD~~~qFa~~l~Q~~~~~~die~I~DlFme 554 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKRS----SPDQALQFAMMLVQDEEPLADIEQIVDLFME 554 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHcc----ChhHHHHHHHHhhccCCCcccHHHHHHHHHH
Confidence 34566666666666554433 356888874 4455555554 37788887777764 445567777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHH
Q 047408 245 NGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRV 324 (830)
Q Consensus 245 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 324 (830)
.+....+...+-..++ +..|+.-...+=+---...+..+.+.. ++-.+.-.. +-+..+.+.+.|.|-...|++.
T Consensus 555 ~N~iQq~TSFLLdaLK-~~~Pd~g~LQTrLLE~NL~~aPqVADA----ILgN~mFtH-yDra~IAqLCEKAGL~qraLeh 628 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALK-LNSPDEGHLQTRLLEMNLVHAPQVADA----ILGNDMFTH-YDRAEIAQLCEKAGLLQRALEH 628 (1666)
T ss_pred HHhhhhhHHHHHHHhc-CCChhhhhHHHHHHHHHhccchHHHHH----HHhcccccc-ccHHHHHHHHHhcchHHHHHHh
Confidence 7777777776666554 345554433221111111122222222 222221111 1146677889999999999998
Q ss_pred HhhcCC--CCeehHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHh--
Q 047408 325 FEKMGE--RSVVSWT----SMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE-- 396 (830)
Q Consensus 325 f~~m~~--~d~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-- 396 (830)
+..+.. |.++.-+ -.+.+|.-.-.++++++.++.|...+++.|..+...+..-|...-..+.-.++|+....
T Consensus 629 ytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~e 708 (1666)
T KOG0985|consen 629 YTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYE 708 (1666)
T ss_pred cccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccch
Confidence 888754 2222211 12345666667899999999999999998888777776666554434444444443322
Q ss_pred ---------hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhH------------------------------
Q 047408 397 ---------NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSW------------------------------ 437 (830)
Q Consensus 397 ---------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~------------------------------ 437 (830)
.++.-|+.+.--.|.+-++.|++.+..++.++-.--|.---
T Consensus 709 GL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvl 788 (1666)
T KOG0985|consen 709 GLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVL 788 (1666)
T ss_pred hHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHH
Confidence 13456667777889999999999999888766532221111
Q ss_pred ----HHHHHHHHHHHHHHhCC-CCCc------------------------cccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 438 ----NTMIGALDLFVAMLQNF-EPDG------------------------VTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 438 ----n~~i~al~~f~~m~~~~-~pd~------------------------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
|.|..-++.|.+-...+ .|-. +...-++.-+.+.+++..-...++..+..|
T Consensus 789 YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG 868 (1666)
T KOG0985|consen 789 YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG 868 (1666)
T ss_pred HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 11111222222211111 1100 001111122233334444444455555555
Q ss_pred CCCchhHHhHHHHHHHhcCCH--------------------------------------H--------------HHHHHh
Q 047408 489 ISADRNVANAIVDMYVKCGVL--------------------------------------V--------------LARSLF 516 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~--------------------------------------~--------------~A~~~f 516 (830)
..|+.++|+|...|...++- . .|+-+.
T Consensus 869 -~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv 947 (1666)
T KOG0985|consen 869 -SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLV 947 (1666)
T ss_pred -CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHH
Confidence 34566666665555433210 0 011111
Q ss_pred hhC----------------------------C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-------------
Q 047408 517 DMI----------------------------P-AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAG------------- 554 (830)
Q Consensus 517 ~~m----------------------------~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------- 554 (830)
+++ + ..|+..-+.-+.++...+-+.+-++++++..-..
T Consensus 948 ~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLL 1027 (1666)
T KOG0985|consen 948 ERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLL 1027 (1666)
T ss_pred hccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhH
Confidence 110 0 1133333444556667777777777777775321
Q ss_pred ----CCCCh--h-HHHH---------HHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 555 ----IEPDE--V-SFIS---------VLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 555 ----~~Pd~--~-t~~~---------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
++.|. + .|.. +...+...+.++||..+|+... .+......| ...-|.++.|.++-
T Consensus 1028 iLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VL---ie~i~~ldRA~efA 1098 (1666)
T KOG0985|consen 1028 ILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVL---IENIGSLDRAYEFA 1098 (1666)
T ss_pred HHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHH---HHHhhhHHHHHHHH
Confidence 01111 0 0111 1122344556677777765431 112222222 23456777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 619 EMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 619 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
++.. .+.+|..|..+-.+.|.+.+|..-+-+ .+||+.|.-.+++-.+.|+|+|-.+.+...+++.
T Consensus 1099 e~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1099 ERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 7653 356899999999999999988887654 4788999999999999999999999887666544
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.61 E-value=0.00021 Score=77.77 Aligned_cols=217 Identities=13% Similarity=0.187 Sum_probs=123.8
Q ss_pred CCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChhHHH
Q 047408 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISGYIANGVAEKGL 252 (830)
Q Consensus 176 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~~~~~g~~~~A~ 252 (830)
.+++...+++.+...+ +..-...|....--.+...| +.++|......-. .++.+.|..+.-.+-...++++|+
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg---~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLG---KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhccc---chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 4455556666655554 22222222222111122233 3566665554433 356788998888888888999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhh---cC
Q 047408 253 EVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEK---MG 329 (830)
Q Consensus 253 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~---m~ 329 (830)
+.|+..... .||.... +.-|--.-++.|+++.....-.. ..
T Consensus 96 Kcy~nAl~~--~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 96 KCYRNALKI--EKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHHhc--CCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 999988764 3443221 11111111112222222221111 12
Q ss_pred CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcchHHHHHH------HhhccCcchhhhhHHHHHHhhcCCCc
Q 047408 330 ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREG-IEPDVYAITSILH------ACACDGLLEIGKDVHDYIKENDMQSS 402 (830)
Q Consensus 330 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~g~~~~ 402 (830)
......|..+..++.-.|+...|..+.++..+.. -.|+...|.-... -....|.++.+.+.+...... +...
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dk 218 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDK 218 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHH
Confidence 2345689999999999999999999998887654 2466555543322 234456666666655443222 2222
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKD 433 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 433 (830)
...--.-.+.+.+.|++++|..++..+..++
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 3344456778889999999999999887664
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.57 E-value=0.00013 Score=81.00 Aligned_cols=436 Identities=15% Similarity=0.114 Sum_probs=227.4
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 047408 188 KMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN 264 (830)
Q Consensus 188 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 264 (830)
+++...+.-|...|-.+--+....| +++.+-+.|++... .....|+.+-..|...|....|+.+++.-....-.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g---~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCG---QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3333345556666666666666667 47777777776543 34567888888888888888888888766543323
Q ss_pred CChhhH-HHHHHHHh-cCCChHHHHHHHHHHHHhC--CC--CCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHH
Q 047408 265 VDLATM-VTVLSGCA-NCGALMFGRAVHAFALKAC--FS--KEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTS 338 (830)
Q Consensus 265 pd~~t~-~~ll~a~~-~~~~~~~~~~l~~~~~~~g--~~--~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~ 338 (830)
|+..+- -.+-+.|. +.+..++|...-..++..+ .. .....+-.+--+|...- +...+|.-
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se 455 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE 455 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH
Confidence 443333 33333343 3445555554444444311 00 01111111111111100 00001100
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-CCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcC
Q 047408 339 MIAGYAREGVFDGAIRLFRGMVREG-IEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCG 417 (830)
Q Consensus 339 li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 417 (830)
+.....++++.+++..+.+ -.|+..-|.++ -++-.++++.|.+...+.++.+-..+...|.-|.-.+...+
T Consensus 456 ------R~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 456 ------RDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred ------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 0011234555555554432 23433333333 23445566666666666666655556666666666666666
Q ss_pred ChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHH----HHHHHHHH----HHhCC
Q 047408 418 SMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALER----GREIHGYI----LRHGI 489 (830)
Q Consensus 418 ~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~----a~~i~~~~----~~~g~ 489 (830)
++.+|+.+.+...+.-...++-|-.-+ .- ...-.---..+..|.+.=++-+ +.+..+.. .+.|.
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~------~i--~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKI------HI--ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhh------hh--hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 666666665443211000000000000 00 0000000000111110000000 00000000 00010
Q ss_pred -------CCchhHHhH---HHHHHHhcCCHHHHHHHhhhCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 490 -------SADRNVANA---IVDMYVKCGVLVLARSLFDMIPAKD------LISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 490 -------~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
.....++.. ++..=.+.-..+.....|...+.|+ ...|......+...++.++|...+.+...
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~- 678 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK- 678 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-
Confidence 001112222 2221111111111222222233333 23566677788888999999877777765
Q ss_pred CCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CH
Q 047408 554 GIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYR--FIEMM-PVAP-DA 627 (830)
Q Consensus 554 g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~--~~~~m-~~~p-~~ 627 (830)
+.|-.. .|..........|..+||.+.|.... -+.|+ +....++..+|.+.|+..-|.. ++..+ .+.| +.
T Consensus 679 -~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 679 -IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred -cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 455544 34444456677889999999998765 67786 6778899999999998777777 77776 6777 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
..|-.|.....+.|+.+.|-..|+.++++++.+|
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8999999999999999999999999999998876
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.4e-05 Score=83.18 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=139.9
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChh----------hHHHHHHHH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLI----------SWTIMIAGY 534 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~----------~~~~li~~~ 534 (830)
.++..+..+++.+.+-+...+... .+..-++.....|...|...+....-+...+..-. +..-+..+|
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 334444455666666666666554 55556666677777777766665554443322111 122233466
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCCHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE-HYACMVDLLSRTGNLSE 613 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~g~~~e 613 (830)
...++++.|+..|++.+..-..||..+ +....+++....+... -+.|... -.-.=...+.+.|++.+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHH
Confidence 667778888888888766555554432 2222334443333321 2344321 11122667788999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 614 AYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 614 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|...+.++ ...| |...|.....++...|++..|..-+++.++++|+....|..=+-++....+|++|.+.+++..+
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 4456 5688888888889999999999999999999999999999999999999999999999887664
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.56 E-value=0.0002 Score=81.29 Aligned_cols=344 Identities=16% Similarity=0.079 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhc
Q 047408 79 LEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNK 157 (830)
Q Consensus 79 ~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 157 (830)
...|+..|-+..+..+.- ..|..|-..|....+...|++.|+...+ +++.+...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 666777776666555443 2666666666655566667777766655 3444466666777777777777776665332
Q ss_pred CCCCCc---chHHH--HHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCc
Q 047408 158 IDNGKV---FIWNL--LMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDV 232 (830)
Q Consensus 158 m~~~~~---~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~ 232 (830)
..+.+. -.||- .--.|.+.++...|+.-|+...+-. +-|...|..+..+|...| +...|.++|++...-++
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG---ry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG---RYSHALKVFTKASLLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC---ceehHHHhhhhhHhcCc
Confidence 222211 11222 2223444555555555555444321 123344555555555555 45555555555443322
Q ss_pred chHHH---HHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcCCC-------hHHHHHHHHHHHHh
Q 047408 233 VSWNC---MISGYIANGVAEKGLEVFKEMLNL------GFNVDLATMVTVLSGCANCGA-------LMFGRAVHAFALKA 296 (830)
Q Consensus 233 ~~~n~---li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~-------~~~~~~l~~~~~~~ 296 (830)
.+|-. ....-+.+|.+.+|+..+...... +..--..++......+...|- ++...+.+.-++..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22211 112233445555555554443321 000011111111111111110 11111111111111
Q ss_pred C--------------------CCCCchHHHHHHHHhhc----CCCh---H---HHHHHHhhcC--CCCeehHHHHHHHHH
Q 047408 297 C--------------------FSKEISFNNTLLDMYSK----CGDL---D---GAIRVFEKMG--ERSVVSWTSMIAGYA 344 (830)
Q Consensus 297 g--------------------~~~~~~~~~~Li~~y~k----~g~~---~---~A~~~f~~m~--~~d~~~~~~li~~~~ 344 (830)
. ..|+ .+...++..+.+ .+.. | -+.+.+-.-. .-+..+|..++..|.
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 1 1233 221222222222 1111 1 0111110000 024567877776665
Q ss_pred h----cC----ChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhc-CCCchhhHHHHHHHHHh
Q 047408 345 R----EG----VFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEND-MQSSLYVSNALMDMYAK 415 (830)
Q Consensus 345 ~----~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~k 415 (830)
+ .| +...|+..+.+.++. ..|...+-..|...+..|++.-+ .|..+...- .+....+|..+.-.+.+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~a--QHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACA--QHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhh--hhhhhhhhhccccchhheeccceeEEe
Confidence 5 12 224677777777653 33444444444444444555444 444443332 24556788888888999
Q ss_pred cCChHHHHHHHhcCCCCC
Q 047408 416 CGSMADAESVFNQMPVKD 433 (830)
Q Consensus 416 ~g~~~~A~~~f~~m~~~~ 433 (830)
..+++.|...|.....-+
T Consensus 863 n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred cccHHHhhHHHHhhhhcC
Confidence 999999999998876543
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=0.00023 Score=79.44 Aligned_cols=415 Identities=14% Similarity=0.140 Sum_probs=220.5
Q ss_pred HHhcCCCCCHHHHHHHHhhCCC--CCcch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChH
Q 047408 208 LAVVGNSRRVKDAHKLFDELSD--RDVVS-WNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALM 284 (830)
Q Consensus 208 ~~~~g~~~~~~~A~~lf~~m~~--~~~~~-~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 284 (830)
+...| +.++|++.++.-.. .|..+ .......+.+.|+.++|..+++.+... .|+...|-..+..|.....
T Consensus 14 l~e~g---~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~-- 86 (517)
T PF12569_consen 14 LEEAG---DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL-- 86 (517)
T ss_pred HHHCC---CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc--
Confidence 34455 47777777766443 34333 344556677777777777777777764 4666666554444431100
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCC--eehHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 047408 285 FGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERS--VVSWTSMIAGYAREGVF-DGAIRLFRGMVR 361 (830)
Q Consensus 285 ~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 361 (830)
+ ......+...++++++.... ..+.--+.-.+.....+ ..+...+..+..
T Consensus 87 ------------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 87 ------------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred ------------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence 0 00112333334444332211 01111111111111112 233344455566
Q ss_pred cCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhh----c----------CCCch--hhHHHHHHHHHhcCChHHHHHH
Q 047408 362 EGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEN----D----------MQSSL--YVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 362 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g----------~~~~~--~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
.|+++ +|+.|-..|......+...++....... + -+|.. .++.-|...|-..|+.++|...
T Consensus 140 KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~ 216 (517)
T PF12569_consen 140 KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY 216 (517)
T ss_pred cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66543 3444444444433333333333333221 1 12333 2446667788888999998888
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 047408 426 FNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYV 504 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 504 (830)
+++..+.+ |+ ...|..-...+-+.|++.+|.+..+.+.+.. ..|..+-+-.+..+.
T Consensus 217 Id~aI~ht----------------------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 217 IDKAIEHT----------------------PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHhcC----------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 88766553 33 2344455566778888888888888887765 357777788888899
Q ss_pred hcCCHHHHHHHhhhCCCCCh----------hhH--HHHHHHHHhcCChHHHHHHHHHHHHc--CCC-------------C
Q 047408 505 KCGVLVLARSLFDMIPAKDL----------ISW--TIMIAGYGMHGFGCDAIATFNDMRQA--GIE-------------P 557 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-------------P 557 (830)
++|++++|.+++.....++. ..| ..-..+|.+.|++..|++.|....+. .+. .
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 99999999999887765542 134 33456888999999998887776541 122 2
Q ss_pred ChhHHHHHHHHHHccCC-------HHHHHHHHHHhHhhcCCCCCcch-----------HHHHHHHH---HhcCCHHHHHH
Q 047408 558 DEVSFISVLYACSHSGL-------VDEGWRFFNMMRYECNIEPKLEH-----------YACMVDLL---SRTGNLSEAYR 616 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~-----------y~~lv~~l---~r~g~~~eA~~ 616 (830)
+..+|..+|...-+... ...|.+++-.+..+-........ -.-+-.-. .+...-+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22334444433222211 12334443333221111000000 00000000 01111111111
Q ss_pred HHH-----------hC----CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 617 FIE-----------MM----PVAPDATIWG-SLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 617 ~~~-----------~m----~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
.-. +. +.+.|....+ .|+ ....=+++|.+.++-+.+..|++...|.+--.+|.+.|++--|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLa 510 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLA 510 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHH
Confidence 110 00 1122221111 122 2334578899999999999999999999999999999999988
Q ss_pred HHHHH
Q 047408 681 KKLRE 685 (830)
Q Consensus 681 ~~~~~ 685 (830)
.+-.+
T Consensus 511 LqaL~ 515 (517)
T PF12569_consen 511 LQALK 515 (517)
T ss_pred HHHHH
Confidence 87654
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00043 Score=74.59 Aligned_cols=435 Identities=14% Similarity=0.113 Sum_probs=232.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCC-CCCccchHHHHHHHHH--h
Q 047408 69 EIGRFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGI-VIDDGVLGSKLVFMFV--T 144 (830)
Q Consensus 69 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~~li~~y~--~ 144 (830)
=++-+..+|++++|.....++...+|++. .+..=+-+..+.+.+++|..+. ...+. ...+.+. +=.+|| +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~~~~~~~~~---fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI---KKNGALLVINSFF---FEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcchhhhcchhh---HHHHHHHHH
Confidence 35667788999999999999998887763 4544445566777888877443 23221 1121221 244555 5
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcCCCCCHHHHHHH
Q 047408 145 CGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAA-DSYTFSCVLKCLAVVGNSRRVKDAHKL 223 (830)
Q Consensus 145 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~A~~l 223 (830)
.+..++|.+.++...+-+..+-..-...+-+.|++++|+.+|+.+.+.+..- |...-..++.+-.. ..+. +
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~~-~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQVQ-L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhHH-H
Confidence 6999999999996666665566666778889999999999999998765421 12222222222211 1121 3
Q ss_pred HhhCCCCCcchHHHH---HHHHHhCCChhHHHHHHHHHHHCC-------CCCCh--hhH-----HHHHHHHhcCCChHHH
Q 047408 224 FDELSDRDVVSWNCM---ISGYIANGVAEKGLEVFKEMLNLG-------FNVDL--ATM-----VTVLSGCANCGALMFG 286 (830)
Q Consensus 224 f~~m~~~~~~~~n~l---i~~~~~~g~~~~A~~l~~~m~~~g-------~~pd~--~t~-----~~ll~a~~~~~~~~~~ 286 (830)
.+..+.....+|..+ ...+..+|++.+|++++....+.| -.-+. ..= .-+.-.+-..|+-+++
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 555554434444443 345678999999999998883321 11100 011 1112233467889999
Q ss_pred HHHHHHHHHhCCCCCch---HHHHHHHHhhcCCChH-HHHHHHhhcCCCCeehH---------------HHHHHHHHhcC
Q 047408 287 RAVHAFALKACFSKEIS---FNNTLLDMYSKCGDLD-GAIRVFEKMGERSVVSW---------------TSMIAGYAREG 347 (830)
Q Consensus 287 ~~l~~~~~~~g~~~~~~---~~~~Li~~y~k~g~~~-~A~~~f~~m~~~d~~~~---------------~~li~~~~~~g 347 (830)
.+++..+++......++ ..|.|+.+-.-..-.+ .++..|+.........| +.++..|. +
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 99999998876544322 2344554433322222 34444444332222111 12222221 2
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccC--cchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 047408 348 VFDGAIRLFRGMVREGIEPDVYAITSILHACACDG--LLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 348 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
..+.+.++-.... +..|. +.+..++..+.... ....+..++....+........+.-.++..-...|+++.|.++
T Consensus 322 k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2223333222211 22232 33444554443221 2334444444443332222345556667777778888888877
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 047408 426 FNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK 505 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 505 (830)
+.... .+|-+ .+.+. ...+.+..+++.+|.+
T Consensus 399 l~~~~----~~~~s-------------------------------------------s~~~~--~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 399 LSLFL----ESWKS-------------------------------------------SILEA--KHLPGTVGAIVALYYK 429 (652)
T ss_pred HHHHh----hhhhh-------------------------------------------hhhhh--ccChhHHHHHHHHHHh
Confidence 65432 11111 11122 2334566778888888
Q ss_pred cCCHHHHHHHhhhCC------CCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 047408 506 CGVLVLARSLFDMIP------AKDL----ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS 572 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~------~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 572 (830)
.++-+.|..++++.. .... .+|.-...--.++|+.++|..+++++.+. -.+|..+...++.++++.
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 888877777776432 1111 12222223333556666666666666553 133444455555554443
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.51 E-value=0.0011 Score=82.13 Aligned_cols=436 Identities=10% Similarity=0.019 Sum_probs=249.7
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C-C----hhhHHHHHHHHhcC----CChHHH
Q 047408 218 KDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN--V-D----LATMVTVLSGCANC----GALMFG 286 (830)
Q Consensus 218 ~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-d----~~t~~~ll~a~~~~----~~~~~~ 286 (830)
++..+++..+.--+.++ -.+...... .+.+.++++++...|+- | + .+.|..++..+... .+....
T Consensus 265 ~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~ 340 (903)
T PRK04841 265 LETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQEL 340 (903)
T ss_pred HHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHH
Confidence 34444444443333333 233333333 33456777777777651 1 1 24455555544321 122233
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeeh--HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 047408 287 RAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVS--WTSMIAGYAREGVFDGAIRLFRGMVREGI 364 (830)
Q Consensus 287 ~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 364 (830)
..+|.. ....|...|++.+|..........+... ...........|+.+.+...+..+.....
T Consensus 341 ~~lh~r---------------aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~ 405 (903)
T PRK04841 341 PELHRA---------------AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL 405 (903)
T ss_pred HHHHHH---------------HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH
Confidence 334332 3344566677777776666655432211 11112234456777777777666532211
Q ss_pred CCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcC------CCc--hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc--
Q 047408 365 EPDVYAITSILHACACDGLLEIGKDVHDYIKENDM------QSS--LYVSNALMDMYAKCGSMADAESVFNQMPVKDI-- 434 (830)
Q Consensus 365 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~-- 434 (830)
..+..........+...++++++...+....+.-- .+. ......+...+...|++++|...+++......
T Consensus 406 ~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (903)
T PRK04841 406 LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLT 485 (903)
T ss_pred hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 12222223333345567888888888877654311 111 12223344556788999999988876432100
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh----CCC-CchhHHhHHHHHHHhcCCH
Q 047408 435 VSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH----GIS-ADRNVANAIVDMYVKCGVL 509 (830)
Q Consensus 435 ~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~Li~~y~k~g~~ 509 (830)
..+. -......+...+...|+++.|...+...... |-. ........+...+...|++
T Consensus 486 ~~~~------------------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 486 WYYS------------------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL 547 (903)
T ss_pred cHHH------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence 0000 0012233344456788999998888877643 211 1123455667788899999
Q ss_pred HHHHHHhhhCCC-------CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh--hHHHHHHHHHHccCC
Q 047408 510 VLARSLFDMIPA-------KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQA--GIEPDE--VSFISVLYACSHSGL 574 (830)
Q Consensus 510 ~~A~~~f~~m~~-------~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~Pd~--~t~~~ll~a~~~~g~ 574 (830)
++|...+++... ++ ...+..+...+...|++++|...+++.... ...|.. ..+..+.......|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 999998876431 11 223445556677789999999999987652 122222 234445566778899
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCH
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHY-----ACMVDLLSRTGNLSEAYRFIEMMPVA--PDA----TIWGSLLCGCRIHHEV 643 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y-----~~lv~~l~r~g~~~eA~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~ 643 (830)
.++|.+.++....-.........+ ......+...|+.++|.+.+...... ... ..+..+..++...|+.
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 999999988875321111111111 11224456689999999998776211 111 1244566678888999
Q ss_pred HHHHHHHHHHhccC------CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 644 KLAEKVAEHVFELE------PDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 644 ~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
++|...++++++.. ++....+..++..|.+.|+.++|.+.+.+..+.
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999887642 222346788899999999999999998887653
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=0.00014 Score=72.85 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=67.9
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhh---CCCCChhhHHHHHHHHHhcCChHHH
Q 047408 467 ACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDM---IPAKDLISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~---m~~~d~~~~~~li~~~~~~g~~~~A 543 (830)
.....|+...+......+++.. +.|...+..-..+|...|++..|..-+.. +...+....--+-..+..-|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3445577777777777777754 56888888888888888888888766654 3455666666677777888888888
Q ss_pred HHHHHHHHHcCCCCChhH
Q 047408 544 IATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~t 561 (830)
+...++-++ +.||...
T Consensus 243 L~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKL 258 (504)
T ss_pred HHHHHHHHc--cCcchhh
Confidence 888888777 6788763
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.50 E-value=5.8e-05 Score=84.07 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC------------------CCChhhH--HHHHHHHH
Q 047408 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP------------------AKDLISW--TIMIAGYG 535 (830)
Q Consensus 476 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~------------------~~d~~~~--~~li~~~~ 535 (830)
.+.......++.|+| .+++.|-..|....+.+-..+++.... .|....| .-+...|-
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 444555556666754 355666666665555555555544321 1233345 44567788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~e 613 (830)
..|++++|++..++.++ ..|+.+ .|..-...+-|.|++++|.+.++..+ .+.+. -..-+-.+..+.|+|+.++
T Consensus 206 ~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999998 678877 56666788999999999999999886 45553 3444556777889999999
Q ss_pred HHHHHHhCCC---CCCH------HHHH--HHHHHHHhcCCHHHHHHHHHHHhc
Q 047408 614 AYRFIEMMPV---APDA------TIWG--SLLCGCRIHHEVKLAEKVAEHVFE 655 (830)
Q Consensus 614 A~~~~~~m~~---~p~~------~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 655 (830)
|.+.+....- .|-. .+|- ....+|.+.|++..|..-+..+.+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998877632 2211 2453 345668899999999987766543
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.49 E-value=0.00095 Score=72.84 Aligned_cols=458 Identities=13% Similarity=0.101 Sum_probs=241.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 047408 98 TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDN---GKVFIWNLLMHEYS 174 (830)
Q Consensus 98 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 174 (830)
.|-.+++.| ..+.+..+..+.+.+++.-.+. ..+.....-.+...|+.++|......-.+ ++.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCcc--chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 344455544 4566677777777776643222 22222222224456788888776665443 35577988887888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHH
Q 047408 175 KTGNFKESLYLFKKMQSLGIAADSY-TFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLE 253 (830)
Q Consensus 175 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~ 253 (830)
...++++|++.|+..... .||.. .+.-+--.-+..++....-+.+..+-+........|..+.-++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988764 34443 333222222344444445555555555556677899999999999999999999
Q ss_pred HHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCC-
Q 047408 254 VFKEMLNLG-FNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER- 331 (830)
Q Consensus 254 l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~- 331 (830)
++++..+.. -.|+...|.-...-.. -.....+.|..++|.+.+......
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e~~i 215 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNEKQI 215 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhhhHH
Confidence 999987764 2355554422221110 112234556666666666554321
Q ss_pred -Cee-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhh-ccCc-chhhhhHHHHHHhhcCCCchhhHH
Q 047408 332 -SVV-SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACA-CDGL-LEIGKDVHDYIKENDMQSSLYVSN 407 (830)
Q Consensus 332 -d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~~~-~~~a~~~~~~~~~~g~~~~~~~~~ 407 (830)
|-+ .-.+...-+.+.++.++|..+++.++.. .||..-|.-.+..|. ...+ .+....+++..-+.- +
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~------- 285 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-P------- 285 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-c-------
Confidence 211 2234455666777788888888777764 566666655444332 1111 111112222111110 0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
++.. |-... ++......-.+....+....++.
T Consensus 286 -------r~e~-------------------------------------p~Rlp----lsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 286 -------RHEC-------------------------------------PRRLP----LSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred -------cccc-------------------------------------chhcc----HHHhCcchhHHHHHHHHHHHhhc
Confidence 0000 00000 00000000011111122222222
Q ss_pred CCCCc-------------hhHHhHHHHHHHhcCCHHHHHHHhh--hCCCCChhhHHH--HHHHHHhcCChHHHHHHHHHH
Q 047408 488 GISAD-------------RNVANAIVDMYVKCGVLVLARSLFD--MIPAKDLISWTI--MIAGYGMHGFGCDAIATFNDM 550 (830)
Q Consensus 488 g~~~~-------------~~~~~~Li~~y~k~g~~~~A~~~f~--~m~~~d~~~~~~--li~~~~~~g~~~~A~~l~~~m 550 (830)
|+++- +.+.--|+.+|...=.-+.+....+ +...|....|+. ++..|-..|+++.|+...+..
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22110 0011112222221110000000000 012345556654 566777889999999999888
Q ss_pred HHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CH-
Q 047408 551 RQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAP-DA- 627 (830)
Q Consensus 551 ~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~- 627 (830)
.. ..|+.+- |..=..-+.|.|++++|..+++...+ =-.||...-+--+.-..|+.+.++|.++.....-+- ++
T Consensus 398 Id--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~ 473 (700)
T KOG1156|consen 398 ID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV 473 (700)
T ss_pred hc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence 76 5777663 44444678899999999999988762 112344333345566678999999988876652111 21
Q ss_pred -------HHHHHHHH--HHHhcCCHHHHHHHHH
Q 047408 628 -------TIWGSLLC--GCRIHHEVKLAEKVAE 651 (830)
Q Consensus 628 -------~~~~~ll~--~~~~~g~~~~a~~~~~ 651 (830)
..|--+-. +|.+.|++.+|.+=+.
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 34554433 4677777777765443
No 94
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=1e-05 Score=80.30 Aligned_cols=156 Identities=13% Similarity=-0.000 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhc
Q 047408 337 TSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKC 416 (830)
Q Consensus 337 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 416 (830)
+.|...|.+.|.+.+|...|+.-+.. .|-..||..+-++|.+..+.+.|..++...++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766654 444556666666666666666666666665544 233444444555666667
Q ss_pred CChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHH
Q 047408 417 GSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVA 496 (830)
Q Consensus 417 g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 496 (830)
++.++|.++++...+.+ ..+.....++...+.-.++.|.|...+.++++.|. .++..+
T Consensus 304 ~~~~~a~~lYk~vlk~~---------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf 361 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH---------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELF 361 (478)
T ss_pred HhHHHHHHHHHHHHhcC---------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHH
Confidence 77777777777665543 24555666677777777777778777777777774 344444
Q ss_pred hHHHHHHHhcCCHHHHHHHhh
Q 047408 497 NAIVDMYVKCGVLVLARSLFD 517 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~ 517 (830)
+.+.-.+.-.+++|-+..-|+
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHH
Confidence 444443333444444444443
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.46 E-value=6.9e-06 Score=85.08 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=115.7
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACS- 570 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~- 570 (830)
+..+......+|...|++++|.+++... .+.......+..|...++++.|.+.++.|.+ ...|.+ ...+..|+.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHH
Confidence 3344444456788899999999998876 5566667788899999999999999999987 445544 444444432
Q ss_pred ---ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-H
Q 047408 571 ---HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV-K 644 (830)
Q Consensus 571 ---~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~ 644 (830)
-.+.+++|..+|+++..++ .+++...+.+.-+....|+++||++++++. ...| |+.++-.++..+...|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 2236889999999987543 466777888888888899999999888775 4445 355666677777777776 6
Q ss_pred HHHHHHHHHhccCCCCc
Q 047408 645 LAEKVAEHVFELEPDNT 661 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~ 661 (830)
.+.+...++....|+++
T Consensus 254 ~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 77788888888888864
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=0.00011 Score=81.21 Aligned_cols=435 Identities=12% Similarity=0.072 Sum_probs=230.7
Q ss_pred cchHHHHHH--HHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH-cCC--------CCCccc
Q 047408 132 GVLGSKLVF--MFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQS-LGI--------AADSYT 200 (830)
Q Consensus 132 ~~~~~~li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~--------~p~~~t 200 (830)
..+..++++ .|..-|++|.|.+-...+.. -..|..|.+.+.+..+++-|.-.+-.|.. +|. .|+ .+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 555556655 47778999999887776653 46799999999999998888877777653 111 111 11
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 047408 201 FSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANC 280 (830)
Q Consensus 201 ~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 280 (830)
-..+--.....| .+++|..++.+-.+- ..|=..|-..|.+++|+++-+.=-+-.++ .||-.-.+-+...
T Consensus 803 eakvAvLAieLg---MlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 803 EAKVAVLAIELG---MLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEAR 871 (1416)
T ss_pred hhHHHHHHHHHh---hHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhh
Confidence 111111122233 456666666554332 22334455556666666554322111111 1222222222223
Q ss_pred CChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 281 GALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 281 ~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
++.+.|.+.++.. |... +-...|+. .++..-.+..+.+.++ ..|.-....+-..|+.+.|+.+|....
T Consensus 872 ~Di~~AleyyEK~---~~ha--fev~rmL~-----e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 872 RDIEAALEYYEKA---GVHA--FEVFRMLK-----EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred ccHHHHHHHHHhc---CChH--HHHHHHHH-----hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 3443333333221 1000 00000110 1122223333344334 334444555556799999999998876
Q ss_pred HcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHH
Q 047408 361 REGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTM 440 (830)
Q Consensus 361 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~ 440 (830)
. |-++++..+-.|+.++|-++-++ ..|....--|..+|-..|++.+|...|.+...-
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf-------- 996 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAF-------- 996 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------
Confidence 4 45667777888999999887665 346677778999999999999999999765311
Q ss_pred HHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC
Q 047408 441 IGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 441 i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 520 (830)
-.|+++- +++..+...++.. ..+...++-.+-..+ .+.|.. ..--+-.|-|.|.+.+|.++-=+-.
T Consensus 997 snAIRlc----KEnd~~d~L~nla--l~s~~~d~v~aArYy---Ee~g~~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 997 SNAIRLC----KENDMKDRLANLA--LMSGGSDLVSAARYY---EELGGY-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHHHHH----HhcCHHHHHHHHH--hhcCchhHHHHHHHH---HHcchh-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence 0011111 1110001111100 001111222222222 222321 1223456888898888877632222
Q ss_pred --------------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 521 --------------AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 521 --------------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..|+...+.-..-+..+.++++|..++-..++ |...+.-|...|. .--.++-+.|.
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMT 1132 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcC
Confidence 22555566666667788889999888877664 4555666665542 11222223332
Q ss_pred hhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047408 587 YECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 587 ~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 645 (830)
....-.|+ ......+.+.+.+.|.+.-|-+-|.+.+.+ .. -+.++.+.||.++
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--l~----AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--LS----AMRALLKSGDTQK 1189 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--HH----HHHHHHhcCCcce
Confidence 21112222 345667788888999998888888877533 12 2344456666553
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=3.3e-06 Score=78.05 Aligned_cols=122 Identities=10% Similarity=0.078 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047408 545 ATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P 622 (830)
Q Consensus 545 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 622 (830)
.+|++..+ +.|+. +.....++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45556555 56664 4456667788888888888888876 4556 4677788888888899999999888887 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 623 VAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 623 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 455 567888888888899999999999999999999998888877766543
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=1.5e-05 Score=81.02 Aligned_cols=178 Identities=13% Similarity=0.028 Sum_probs=100.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA--K-DL---ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~ 562 (830)
...+..+...|.+.|++++|...|+++.. | +. ..|..+...|.+.|++++|+..|+++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 34445555556666666666666655431 1 11 2445555566666666666666666655 233322 22
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHhHhhcCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 047408 563 ISVLYACSHS--------GLVDEGWRFFNMMRYECNIEPKLEH-YACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL 633 (830)
Q Consensus 563 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 633 (830)
..+..++... |+.++|.+.|+.+... .|+... +..+. +.+....... .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHHH-----------HHHHHH
Confidence 2233333332 4455555555555432 232211 11111 0000000000 011234
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
...+...|+.+.|...++++++..|++ +..+..++.+|...|++++|...++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556788899999999999999987765 468899999999999999999998887654
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=3e-07 Score=60.76 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=31.3
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 047408 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP 430 (830)
Q Consensus 397 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 430 (830)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999984
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=0.00029 Score=76.57 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccC---------CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELE---------PDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~---------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
....++...|+.+.|...++.+.... +.......+.+.++...|++++|.+.+.....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666777777777776654321 11245567888999999999999998777654
No 101
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.41 E-value=4.4e-05 Score=72.80 Aligned_cols=190 Identities=9% Similarity=0.023 Sum_probs=148.6
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHcc
Q 047408 497 NAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHS 572 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~ 572 (830)
..|.-.|...|+...|..-+++..+. +..+|..+...|-+.|+.+.|.+.|++..+ +.|+.- ..|....-++..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 34566788999999999999887643 446888899999999999999999999888 577665 456666667788
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
|.+++|.+.|+....+-...--..+|..++-+-.++|+.+.|.+.+++. ...|+ +.....+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 8999999999988765333233677888888888999999999998886 44554 456677777788889999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++...-.+..+...-+.+.+-.+.|+-+.|.+.-..+.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88887777777777788888888899888887765554
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=3.9e-07 Score=60.24 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=25.6
Q ss_pred CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC
Q 047408 488 GISADRNVANAIVDMYVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 520 (830)
|+.||..+||+||++|+|.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777888888888888888887777777764
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.0054 Score=68.52 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=47.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 047408 278 ANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFR 357 (830)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 357 (830)
-+.|+.+.|..++..+.. |-+++...|-.|+.++|-++-++- .|......+.+-|-..|++.+|+.+|.
T Consensus 923 ES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 923 ESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345555555555544432 244566666678888877776653 455666678888888888888888887
Q ss_pred HHH
Q 047408 358 GMV 360 (830)
Q Consensus 358 ~m~ 360 (830)
+.+
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 764
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.33 E-value=0.0095 Score=73.72 Aligned_cols=262 Identities=11% Similarity=-0.030 Sum_probs=151.8
Q ss_pred hccCcchhhhhHHHHHHhhcCCCc----hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC
Q 047408 379 ACDGLLEIGKDVHDYIKENDMQSS----LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~ 454 (830)
...|+++.+...+....+.--..+ ....+.+...+...|++++|...+++.... +++ .+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~--------------~~~---~g 525 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM--------------ARQ---HD 525 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------Hhh---hc
Confidence 345566666666555544211111 123345556666777777777776654211 000 00
Q ss_pred CCC--ccccccchhhhcchhhHHHHHHHHHHHHH----hCCCC---chhHHhHHHHHHHhcCCHHHHHHHhhhCCC----
Q 047408 455 EPD--GVTMACILPACASLAALERGREIHGYILR----HGISA---DRNVANAIVDMYVKCGVLVLARSLFDMIPA---- 521 (830)
Q Consensus 455 ~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---- 521 (830)
.+. ..++..+...+...|+++.|.+.+..... .|... ....+..+...+...|++++|...+++...
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 011 11223334445566777777776665543 22211 223345566667778999999888876531
Q ss_pred --C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHH-----HHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 047408 522 --K--DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDEVSFI-----SVLYACSHSGLVDEGWRFFNMMRYECNI 591 (830)
Q Consensus 522 --~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 591 (830)
+ ....+..+...+...|+.++|.+.+++.....-. .....+. ..+......|..+.+.+.+..... .
T Consensus 606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~---~ 682 (903)
T PRK04841 606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK---P 682 (903)
T ss_pred cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC---C
Confidence 1 1234445666788899999999999888642111 1111111 112334557899999998776542 1
Q ss_pred CCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 592 EPKLE-----HYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 592 ~p~~~-----~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.+... .+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.+.|...+++++++..
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 11111 1345677788999999999888875 22222 23555666778999999999999999998765
Q ss_pred CC
Q 047408 659 DN 660 (830)
Q Consensus 659 ~~ 660 (830)
..
T Consensus 763 ~~ 764 (903)
T PRK04841 763 RT 764 (903)
T ss_pred cc
Confidence 43
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=1.6e-05 Score=73.55 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=87.3
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 590 NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 590 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
.+.|+ ++......+...|++++|.+.|+.. ...| +...|..+..+|...|++++|...++++++++|+++..+..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34454 3556788899999999999999987 5556 678999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+|...|+.++|...++...+
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=3.9e-05 Score=89.62 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=168.4
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIPAK--------DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
|.....|-..+......++++.|++++++.... -.-.|.++++.-...|.-+...++|++..+. .--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445677777888888999999999999986522 3458999999999999999999999999883 222345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP---DATIWGSLLCGC 637 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 637 (830)
|..|+.-|.+.+..++|-++++.|.++++ -....|...++.+.+...-+.|.++++++ ..-| ......-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999887 55678999999999999999999998875 3333 344555566667
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.++|+.+.|+.+|+.++.-.|.....|..++++-.+.|.-+.+..+++..-..++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999998876653
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=3.5e-05 Score=75.40 Aligned_cols=115 Identities=10% Similarity=0.125 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGC-RIHHE--VKL 645 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~ 645 (830)
.+..+++...++... ...| +.+.|..+...|...|++++|.+.+++. ...| +..+|..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L---~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKI---RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455666666666654 3345 5778888888899999999999988887 5566 467777777763 66676 599
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|..+++++++.+|+++..+..|+..+...|++++|...++++.+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998875
No 108
>PLN02789 farnesyltranstransferase
Probab=98.25 E-value=9e-05 Score=77.87 Aligned_cols=199 Identities=10% Similarity=0.074 Sum_probs=147.0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh--HHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG--CDA 543 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~--~~A 543 (830)
..+..++|......+++.. +.+..+++....++.+.| .+++|...++++. .++...|+-....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 4456778888888887754 345567776667777777 6799999998765 45667788766566666663 788
Q ss_pred HHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhc---CCH----HHH
Q 047408 544 IATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRT---GNL----SEA 614 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~---g~~----~eA 614 (830)
++.+++|.+ ..|+. ..+..-..++.+.|+++++++.++.+.+. .| +...|+-...++.+. |.. +++
T Consensus 128 l~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 128 LEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 999999987 56654 47888888888999999999999999743 34 355566555555444 323 467
Q ss_pred HHHHHh-CCCCC-CHHHHHHHHHHHHhcC----CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 615 YRFIEM-MPVAP-DATIWGSLLCGCRIHH----EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 615 ~~~~~~-m~~~p-~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
+++.++ +...| |...|+.+.+.+..++ +..+|...+.++++.+|+++.+...|+++|+..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 777744 46667 5689999999988743 456788889999999999999999999999864
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=1.8e-05 Score=71.97 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
.+..-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+.++.+++.++|+++.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455667788999999999999987 5566 56789999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 673 EAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
..|+.+.|.+-|+.... |. ..+|+..++...-+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~----------~~-------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR----------IC-------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHH----------Hh-------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999987764 21 146777777776665555443
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.23 E-value=0.00037 Score=75.75 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=164.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc-chhhhcchhhHHHHHHHH
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC-ILPACASLAALERGREIH 481 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~-ll~a~~~~~~~~~a~~i~ 481 (830)
...+..+...|...|+.+++.+.+......... .++...... ....+...|+.+.+..++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~e~~~~~a~~~~~~g~~~~A~~~~ 66 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-------------------RATERERAHVEALSAWIAGDLPKALALL 66 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555666666777777765555443222100 111111111 112335678899999999
Q ss_pred HHHHHhCCCCchhHHh---HHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047408 482 GYILRHGISADRNVAN---AIVDMYVKCGVLVLARSLFDMIPAKDL---ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~---~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 555 (830)
..+.+.. +.+...++ .+.......|..+.+.+.++.....+. ..+..+...+...|++++|.+.+++..+ .
T Consensus 67 ~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~ 143 (355)
T cd05804 67 EQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--L 143 (355)
T ss_pred HHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h
Confidence 9888764 44544444 233333345667777777765332222 3444556688899999999999999998 4
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHH
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL--EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP--DATI 629 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p--~~~~ 629 (830)
.|+.. .+..+...+...|++++|..+++.........|+. ..|..+...+...|++++|.+.+++. ...| ....
T Consensus 144 ~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 144 NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 56654 56677788999999999999999876432222332 23557889999999999999999986 2233 2221
Q ss_pred H--H--HHHHHHHhcCCHHHHHHH---HHHHhccCCCC--cchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 630 W--G--SLLCGCRIHHEVKLAEKV---AEHVFELEPDN--TGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 630 ~--~--~ll~~~~~~g~~~~a~~~---~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
. + .++.-....|..+.+.+. ........|.. ...-...+.++...|++++|.+..+.++..
T Consensus 224 ~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 224 DLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1 334444555644444443 22222111221 122246777888999999999999888753
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=5.3e-05 Score=83.40 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=127.9
Q ss_pred CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047408 488 GISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLY 567 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 567 (830)
+++|--..-..+...+.++|-..+|..+|+++ ..|--.|..|...|+..+|.++..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667778899999999999999999874 5788899999999999999999888877 5888889999988
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
.......+++|+++++....+. -..+.....+.++++++.+.++.. .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8888888888998887654320 001111122345555665555542 3444 23455555555555556666
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
|..+|...+.++|++...++.++-.|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 6666666666666666666666666666666666555555555444
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.20 E-value=2.2e-05 Score=81.41 Aligned_cols=213 Identities=10% Similarity=0.031 Sum_probs=139.0
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-CCC---hhhHHH-HHHHHHhcC
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-AKD---LISWTI-MIAGYGMHG 538 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~d---~~~~~~-li~~~~~~g 538 (830)
+.+++..+|..+. +...+.+.. .|.......+...+...++-+.+..-++... .+. -.++.. ....|...|
T Consensus 41 ~~Rs~iAlg~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 3444555555432 223332323 4555555444444433355566665554433 221 122222 224456779
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcch---HHHHHHHHHhcCCHHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEH---YACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---y~~lv~~l~r~g~~~eA~ 615 (830)
++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.|.++.-.+.+.+|.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 999999998653 233445556678889999999999999997 44455322 233444443445799999
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCH-HHHHHHHHHHHh
Q 047408 616 RFIEMM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKW-EEVKKLREKISR 689 (830)
Q Consensus 616 ~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~ 689 (830)
-+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+..-.|+. +.+.+.+..++.
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999998 44578888999999999999999999999999999999999999999899999998 677888888775
No 113
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=2.8e-06 Score=56.98 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE 559 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 559 (830)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00056 Score=67.40 Aligned_cols=321 Identities=10% Similarity=0.050 Sum_probs=171.1
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHH-HHHHHH
Q 047408 65 NYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGS-KLVFMF 142 (830)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-~li~~y 142 (830)
-+++.|..+.+..++.+|++++..-.+..|... ..+.|-.+|....++..|...++++.... |. ..-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~-~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PE-LEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hH-HHHHHHHHHHHH
Confidence 367778888889999999999988877776544 55566667778888999998888886643 22 11111 112233
Q ss_pred HhCCChHHHHHHHhcCCCC-CcchHHHHHHHH--HhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHH
Q 047408 143 VTCGDLKEGRRVFNKIDNG-KVFIWNLLMHEY--SKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKD 219 (830)
Q Consensus 143 ~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 219 (830)
-+.+.+.+|++|...|... +...-..-+.+- -..+++..+..+.++...
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---------------------------- 140 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---------------------------- 140 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC----------------------------
Confidence 4567777777777766653 211111111111 123444444444444332
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 047408 220 AHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFS 299 (830)
Q Consensus 220 A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 299 (830)
+.+..+-+.......+.|++++|++-|+...+-|---....|+..+..+ +.++...+......++.+|+.
T Consensus 141 ---------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 141 ---------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ---------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 2223333333333334455555555554444332222223333333222 233444444444444444432
Q ss_pred CCch--------------H-------HHHHH-------HHhhcCCChHHHHHHHhhcCCC-----CeehHHHHHHHHHhc
Q 047408 300 KEIS--------------F-------NNTLL-------DMYSKCGDLDGAIRVFEKMGER-----SVVSWTSMIAGYARE 346 (830)
Q Consensus 300 ~~~~--------------~-------~~~Li-------~~y~k~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~ 346 (830)
..+. + -++++ ..+.+.|+.+.|++.+-.||.+ |++|...+.-.- -+
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 1111 1 12222 3456778889999999888864 667665543222 23
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcC-CCchhhHHHHHHHHHhc-CChHHHHH
Q 047408 347 GVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDM-QSSLYVSNALMDMYAKC-GSMADAES 424 (830)
Q Consensus 347 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~k~-g~~~~A~~ 424 (830)
+++.+..+-+.-+...+. --..||..++-.||+..-++.|-.++.+-...-+ -.+...|+ |++++.-+ -..++|.+
T Consensus 290 ~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~K 367 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFK 367 (459)
T ss_pred CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHH
Confidence 455555555555555432 2346888888888888888888777765332221 12334444 44444433 34566665
Q ss_pred HHhcC
Q 047408 425 VFNQM 429 (830)
Q Consensus 425 ~f~~m 429 (830)
-++.+
T Consensus 368 KL~~L 372 (459)
T KOG4340|consen 368 KLDGL 372 (459)
T ss_pred HHHHH
Confidence 55443
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.15 E-value=0.00013 Score=71.42 Aligned_cols=153 Identities=11% Similarity=0.128 Sum_probs=117.1
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHH
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEG 578 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a 578 (830)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+ ..|+.. .+..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 467888888887665554432221 012236777888888888887 456655 577777889999999999
Q ss_pred HHHHHHhHhhcCCCC-CcchHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 579 WRFFNMMRYECNIEP-KLEHYACMVDLL-SRTGN--LSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 579 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
...|+... .+.| +...+..+..++ .+.|+ .++|.+++++. ...| +..++..|...+...|++++|+..+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887 5567 477888888864 77787 59999999997 5566 567888888889999999999999999
Q ss_pred HhccCCCCcchHH
Q 047408 653 VFELEPDNTGYYV 665 (830)
Q Consensus 653 ~~~l~p~~~~~~~ 665 (830)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999988765443
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=9.2e-05 Score=75.24 Aligned_cols=181 Identities=10% Similarity=-0.001 Sum_probs=126.8
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc---hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-Chh---hH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISAD---RNVANAIVDMYVKCGVLVLARSLFDMIPA--K-DLI---SW 527 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~---~~ 527 (830)
....+......+...|+++.|...+..+++..- .+ ...+..+...|.+.|++++|...|+++.+ | +.. .|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 344566666778889999999999999887542 22 24667789999999999999999998752 2 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 047408 528 TIMIAGYGMH--------GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA 599 (830)
Q Consensus 528 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 599 (830)
..+..++.+. |+.++|++.|+++.. ..|+..-....+..... .. .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~---~~------~~~~---------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY---LR------NRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH---HH------HHHH---------HHHH
Confidence 5555666654 789999999999998 46766432211111100 00 0000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM----PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.+.+.|.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677889999999999988876 3334 357888999999999999999998887766555
No 117
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.2e-06 Score=56.07 Aligned_cols=35 Identities=43% Similarity=0.741 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDL 267 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 267 (830)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=3.9e-05 Score=84.39 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=128.0
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHH
Q 047408 398 DMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERG 477 (830)
Q Consensus 398 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a 477 (830)
+++|--..-..+.+.+.++|-...|..+|+++..-+ .++-.|...|+..+|
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlemw~-----------------------------~vi~CY~~lg~~~ka 443 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEMWD-----------------------------PVILCYLLLGQHGKA 443 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHH-----------------------------HHHHHHHHhcccchH
Confidence 345555566778888889999999998888764322 234455555655566
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047408 478 REIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP 557 (830)
Q Consensus 478 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 557 (830)
..|..+-++ -+||...|..|.|.....--+++|.++++....+--..|+-.+
T Consensus 444 eei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~-------------------------- 495 (777)
T KOG1128|consen 444 EEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI-------------------------- 495 (777)
T ss_pred HHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc--------------------------
Confidence 665555554 2455666666665555555555555555543322111111111
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLL 634 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll 634 (830)
.+.++++++.+.|+.-. .+.| ...+|-...-+.-+.++++.|.+.|..- ..+|| ...||+|-
T Consensus 496 ------------~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 496 ------------LSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred ------------ccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 11344445554444322 2223 2344444444555556666665555443 45665 36677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
.++.++|+..+|...++++++-+-++...+....-+-.+.|.|++|.+....|.+...
T Consensus 561 ~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 561 TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7777777777777777777776666666655555566677777777777766655433
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00013 Score=84.37 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=116.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYAC 600 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 600 (830)
++..+-.|.....+.|..++|+.+++...+ +.||.. ....+..++.+.+.+++|....++.. ...|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 567788888889999999999999999998 799988 57777889999999999999999876 55675 677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMMP-VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+..++.+.|+.++|.++|++.- -.|+ ..+|.++..++...|+.++|..+++++++...+-+..|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8999999999999999999972 3444 68899999999999999999999999998866544443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00017 Score=70.48 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=105.2
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 047408 555 IEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGS 632 (830)
Q Consensus 555 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 632 (830)
..|+......+-.++.-.|+-+.+..+....... -..+.+.....+....+.|++.+|...+++. +-+||...|+-
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4565443355556777778877777776654322 1223445556888899999999999999887 44567899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
+..+|-+.|+.++|+..+.+++++.|+++.++..|+-.|.-.|+.++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988777653
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.10 E-value=5.5e-05 Score=69.29 Aligned_cols=100 Identities=19% Similarity=0.298 Sum_probs=82.7
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 590 NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 590 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
...|+ ......++..+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++++|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34453 455667777888889999998888886 4445 56788888888888999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.++...+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887664
No 122
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00022 Score=76.71 Aligned_cols=222 Identities=18% Similarity=0.190 Sum_probs=145.7
Q ss_pred hhcCCChHHHHHHHhhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhh
Q 047408 312 YSKCGDLDGAIRVFEKMGER---SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGK 388 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 388 (830)
+.+.|++.+|.-.|+..... +...|--|....+.+++-..|+..+++-++ +.|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~--------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPT--------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCc---------------------
Confidence 45667777777777765443 345666666666666666666666666554 2333
Q ss_pred hHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHHHHhCCCCCccccccchhh
Q 047408 389 DVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDI-VSWNTMIGALDLFVAMLQNFEPDGVTMACILPA 467 (830)
Q Consensus 389 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~-~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a 467 (830)
+..+.-+|.-.|...|.-.+|.+.|+.-..... ..| ....+++....-. ..
T Consensus 352 -------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~------------l~~a~~~~~~~~~---~s 403 (579)
T KOG1125|consen 352 -------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH------------LVSAGENEDFENT---KS 403 (579)
T ss_pred -------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh------------ccccCccccccCC---cC
Confidence 344444555556666666666666554311100 000 0000001111100 22
Q ss_pred hcchhhHHHHHHHHHHH-HHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHH
Q 047408 468 CASLAALERGREIHGYI-LRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A 543 (830)
..+...+....++|-.+ ...+...|+.+...|.-.|--.|++++|...|+... ..|...||-|...++...+.++|
T Consensus 404 ~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EA 483 (579)
T KOG1125|consen 404 FLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEA 483 (579)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHH
Confidence 33344455555555444 445656888899999999999999999999999765 34788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 544 IATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
++-|++.++ ++|+.+ ....|.-+|...|.++||.++|-...
T Consensus 484 IsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 484 ISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999 899988 45566778999999999999886543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.00 E-value=0.0017 Score=68.94 Aligned_cols=174 Identities=15% Similarity=0.078 Sum_probs=115.7
Q ss_pred CHHHHHHHhhhCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHH
Q 047408 508 VLVLARSLFDMIPA------KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWR 580 (830)
Q Consensus 508 ~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~ 580 (830)
++.+++..-+.++. ++.-....++.+.........+..++- +... |-.. ......-.....|..++|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK---RGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC---ccchHHHHHHHHHHHHhcccchHHH
Confidence 55666666666663 244455555554433333333333222 2221 2111 12222334556788888888
Q ss_pred HHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047408 581 FFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 581 ~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 657 (830)
.++.+.. -.|+ +......++.+.+.++.++|.+.++++ ...|+ ...|-++..++...|+.++|+..++....-+
T Consensus 328 ~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 8888764 3454 445556788888999999999888887 56676 5778888888888899999999988888888
Q ss_pred CCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 658 PDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 658 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+++..|..|+..|..+|+-.+|..-+.++-
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999988888888888877777766665543
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.97 E-value=0.00066 Score=79.88 Aligned_cols=235 Identities=13% Similarity=0.148 Sum_probs=176.2
Q ss_pred HHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh-CCC---CchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC
Q 047408 447 FVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH-GIS---ADRNVANAIVDMYVKCGVLVLARSLFDMIPAK 522 (830)
Q Consensus 447 f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 522 (830)
|.+.....+.....|...+.-..+.++++.|+++.+++++. ++. --..+|.+++++----|.-+...++|++..+-
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 44444443444566777777778999999999999998764 222 23568889998888888889999999988643
Q ss_pred -C-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcch---
Q 047408 523 -D-LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEH--- 597 (830)
Q Consensus 523 -d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--- 597 (830)
| ...|..|...|...+.+++|.++|++|.+. +.-....|...+..+.+...-+.|..++.+..+ .-|..+|
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEF 1602 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHH
Confidence 3 457889999999999999999999999985 554555789999999999999999999988763 4455444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHH-HHHHHHh
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELE--PDNTGYYV-LLANVYA 672 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~~~~~~~-~l~~~y~ 672 (830)
..-.+++-.+.|+-+.+..+|+.. .-.| -...|+.++..-.+||+.+.++.+|++++++. |.....+. .....--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 455677788999999999999886 2233 46789999999999999999999999998764 54443332 3333333
Q ss_pred hhcCHHHHHHHHH
Q 047408 673 EAEKWEEVKKLRE 685 (830)
Q Consensus 673 ~~g~~~~A~~~~~ 685 (830)
+-|+-+.++.+-.
T Consensus 1683 ~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1683 SHGDEKNVEYVKA 1695 (1710)
T ss_pred hcCchhhHHHHHH
Confidence 3455555555433
No 125
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0029 Score=67.85 Aligned_cols=357 Identities=17% Similarity=0.119 Sum_probs=216.0
Q ss_pred HHhhcCCChHHHHHHHhhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCcch
Q 047408 310 DMYSKCGDLDGAIRVFEKMG---ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGLLE 385 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~ 385 (830)
+..+..|+++.|...|-+.. .+|-+.|..=..+|+..|++++|++=-.+-++ +.|+. ..|.-.-.+....|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 44567899999999998753 35888999999999999999999887666655 56774 46888888888899999
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH-HHHhcCCCCCchhHHHHHH--------HHHHHHHHHhCC--
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE-SVFNQMPVKDIVSWNTMIG--------ALDLFVAMLQNF-- 454 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~-~~f~~m~~~~~~~~n~~i~--------al~~f~~m~~~~-- 454 (830)
+|..-+..-++.. +.+...++-|.+++ ..+.+. +.|. +..-|..+.+ .-.-|..+....
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999998887775 56778888888888 222221 2221 2222222222 111122221111
Q ss_pred CCCc-ccccc---chhhhcchhhHHHHHHHHHHHH--HhCCCC------------c----------hhHHhHHHHHHHhc
Q 047408 455 EPDG-VTMAC---ILPACASLAALERGREIHGYIL--RHGISA------------D----------RNVANAIVDMYVKC 506 (830)
Q Consensus 455 ~pd~-~t~~~---ll~a~~~~~~~~~a~~i~~~~~--~~g~~~------------~----------~~~~~~Li~~y~k~ 506 (830)
.|.. -.|.. ++.+...+...+.....-.... ..+..| | ..-...|.++.-+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 1111 01100 1111110000000000000000 000000 0 01123455666666
Q ss_pred CCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----hhHHHHHHHHHHccCCHHHH
Q 047408 507 GVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP--D----EVSFISVLYACSHSGLVDEG 578 (830)
Q Consensus 507 g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P--d----~~t~~~ll~a~~~~g~~~~a 578 (830)
.+++.|.+-++... ..++.-++....+|...|.+.+....-....+.|-.- | ...+..+..++.+.++++.|
T Consensus 238 k~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred hhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 67777777776543 2344455666778888888887777777666554221 1 11223334466667888899
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 579 WRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 579 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
+.+|......+. . -+.+.+....+++++..+.. -+.|+. .--..=...+.+.|++..|...+.++++.
T Consensus 318 i~~~~kaLte~R-t---------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 318 IKYYQKALTEHR-T---------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHhhhhc-C---------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 998887665432 2 23444555556666555554 245554 22333366789999999999999999999
Q ss_pred CCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 657 EPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 657 ~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+|+|+..|...+-.|.+.|.+..|.+--+...
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999988544443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.00088 Score=71.06 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL-YACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMV 602 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv 602 (830)
..|--..-.+...|+.++|+..++.+.. -.||.+.|..+. .-+...+++++|.+.++.+. ...|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHH
Confidence 3344444456677999999999999888 488888877766 55788999999999999987 45676 45556778
Q ss_pred HHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
++|.+.|+..+|...++.. ..+-|+..|..|..+|...|+..++..+. +..|+..|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHH
Confidence 9999999999999999887 33447899999999999999998887654 4577889999999
Q ss_pred HHHHHHHHhCC
Q 047408 681 KKLREKISRRG 691 (830)
Q Consensus 681 ~~~~~~m~~~g 691 (830)
....+..+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99988887654
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.93 E-value=0.05 Score=58.67 Aligned_cols=160 Identities=13% Similarity=-0.000 Sum_probs=113.3
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCCh-hhHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISA-DRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDL-ISWTIMIAGY 534 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~-~~~~~li~~~ 534 (830)
.+|...++.--+..-++.|+.+|..+.+.+..+ +++++++++..|| .++.+.|.++|+--. -+|. .--+..+.-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 456666777777778888999999988887776 8888899988776 467788888887533 2333 3335566666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcC--CCCCcchHHHHHHHHHhcCC
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECN--IEPKLEHYACMVDLLSRTGN 610 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~y~~lv~~l~r~g~ 610 (830)
...++-..|..+|++.+..++.||.. .|..+|.-=+.-|++....++-+++...+. ..|...+-..+++.|+-.+.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 77788888888888888877777764 588888877888888888887777665555 55555566666777766555
Q ss_pred HHHHHHHHH
Q 047408 611 LSEAYRFIE 619 (830)
Q Consensus 611 ~~eA~~~~~ 619 (830)
...-..-++
T Consensus 526 ~~c~~~elk 534 (656)
T KOG1914|consen 526 YPCSLDELK 534 (656)
T ss_pred ccccHHHHH
Confidence 443333333
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00056 Score=66.85 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=87.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT 608 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 608 (830)
.-..+...|+.+.++.+..+... ..|... ..........+.|++.+|...|.+... .-.+|.+.|+.+.-.|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 34455555555555555544332 122221 222345555566666666666665542 2233466666666666666
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 609 GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 609 g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
|+.++|..-|.+. .+.| ++.+.+.|...+...|+.+.|+.++.++....|.++.+-..|+-+....|+.++|+.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666655554 3444 3456666666666777777777777777666666666666677777777777777665
No 129
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.6e-05 Score=52.80 Aligned_cols=34 Identities=18% Similarity=0.470 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP 557 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 557 (830)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888887
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.91 E-value=0.0052 Score=62.01 Aligned_cols=250 Identities=17% Similarity=0.150 Sum_probs=174.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHccC
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMI---AGYGMHGFGCDAIATFNDMRQAGIEPDEVSF-ISVLYACSHSG 573 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~-~~ll~a~~~~g 573 (830)
-|...+.-.|++.+|..-|....+-|+..|-++. ..|...|+..-|+.=|.+.++ ++||-..- ..-...+.++|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3455566678888999888888877777776654 578888999999999999988 78986532 22224567899
Q ss_pred CHHHHHHHHHHhHhhcCCCCC----cch----------HH--HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047408 574 LVDEGWRFFNMMRYECNIEPK----LEH----------YA--CMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLC 635 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~----~~~----------y~--~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 635 (830)
.+++|..=|+...+. .|+ .++ +. ..+..+.-.|+..-|++++..+ .+.| |+..+..-..
T Consensus 121 ele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999999887632 332 222 22 1223355678899999998887 5666 6677777777
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCc
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGS 715 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~ 715 (830)
+|...|+...|+.-.+.+-++..++...+.-++.+|...|+.+++....++-.+ -+|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldp------------------- 254 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDP------------------- 254 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCc-------------------
Confidence 788899999999999999999999999999999999999999998877655543 222
Q ss_pred CCCChhHHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCCCC-CeEEEEecccccc
Q 047408 716 SHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAG-QTIRVTKNLRVCG 791 (830)
Q Consensus 716 ~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~~~-~~~~~~knlr~c~ 791 (830)
.|...-.-|..|.++.+.+..+. +..--..-.|-|+-.-.++.+.|. ++||+----++|.
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 13233345666665555443211 111112235667777778888777 7888766566654
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.00056 Score=79.31 Aligned_cols=143 Identities=11% Similarity=0.008 Sum_probs=116.2
Q ss_pred CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH-
Q 047408 488 GISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AK-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFI- 563 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~- 563 (830)
.++.++..+-.|.......|..++|..+++... .| +...+-.++..+.+.+++++|+..+++... ..|+..+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 455667888888999999999999999999875 34 566888899999999999999999999998 688888654
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLC 635 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~ 635 (830)
.+..++.+.|.+++|..+|+.... -.|+ ...+..+..+|-+.|+.++|...|++. ...|....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 445678899999999999999874 2344 678888999999999999999999987 33455555555543
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00038 Score=74.61 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=102.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRI 639 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 639 (830)
..+|+..+...+++++|.++|+++.++ .|+ ....|+..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345667778889999999999998754 244 5566888888889999999999886 3344 56666666667889
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 640 HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.++++.|..+++++.++.|++-..|..|+.+|...|+|++|.-....+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988765
No 133
>PLN02789 farnesyltranstransferase
Probab=97.88 E-value=0.00073 Score=71.07 Aligned_cols=180 Identities=10% Similarity=0.101 Sum_probs=129.3
Q ss_pred HHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCC--
Q 047408 502 MYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHG-FGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGL-- 574 (830)
Q Consensus 502 ~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~-- 574 (830)
.+.+.++.++|..+.+.+. ..+...|+.--..+...| +.+++++.++++.+. .|+.. ++..-...+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchh
Confidence 3445567788888887765 335567777666777777 579999999999984 55554 45444444555665
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HH
Q 047408 575 VDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH---HE----VK 644 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~~ 644 (830)
.+++..+++.+. .+.|. ...|+-..-++.+.|++++|++.++++ ...| |..+|+.....+... |. .+
T Consensus 124 ~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 367788888877 45564 667888888888999999999999998 4445 578898877766554 22 24
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHhhh----cCHHHHHHHHHH
Q 047408 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEA----EKWEEVKKLREK 686 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~A~~~~~~ 686 (830)
......+++++++|+|..++.-+..+|... ++..+|.+....
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 567777899999999999999999999873 344556655443
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.1e-05 Score=52.21 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV 265 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 265 (830)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0011 Score=65.43 Aligned_cols=286 Identities=14% Similarity=0.113 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHH-HHHHHH
Q 047408 336 WTSMIAGYAREGVFDGAIRLFRGMVREGIEP-DVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSN-ALMDMY 413 (830)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~y 413 (830)
+++.+..+.+..++++|++++..-.+. .| +....+.+-.+|-...++..|-..++++-..- |...-|. --...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 455566666677777777776665543 23 33444444445556666666666666654432 2222221 112334
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
-+.+.+.+|.++...|...+. +. ++..++-..+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~-----------------------------L~---------~~~lqLqaAI--------- 121 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPA-----------------------------LH---------SRVLQLQAAI--------- 121 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHH-----------------------------HH---------HHHHHHHHHH---------
Confidence 455666666666666544311 00 1111110000
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHc
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIP-AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ-AGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~Pd~~t~~~ll~a~~~ 571 (830)
.-..+++..++.+.++.+ +.+..+.+......-+.|++++|++-|+...+ .|..| .+.|+..+ +..+
T Consensus 122 ---------kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~ 190 (459)
T KOG4340|consen 122 ---------KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYS 190 (459)
T ss_pred ---------hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHh
Confidence 112344444555555555 23344444444444556666666666666555 33333 23333322 3334
Q ss_pred cCCHHHHHHHHHHhHhhcCCC---------------------CCcchHHHHHH-------HHHhcCCHHHHHHHHHhCC-
Q 047408 572 SGLVDEGWRFFNMMRYECNIE---------------------PKLEHYACMVD-------LLSRTGNLSEAYRFIEMMP- 622 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~---------------------p~~~~y~~lv~-------~l~r~g~~~eA~~~~~~m~- 622 (830)
.|+++.|+++..++..+ |++ |-.-|-+.++. .+.+.|+.+-|.+.+..||
T Consensus 191 ~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 191 SRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 55666666665555432 221 11223444444 3568899999999999995
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 623 ---VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 623 ---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.+.|+++...+. .-...++...+.+-++-+++++|-.+.++..+.-+|++..-++-|..++-
T Consensus 270 RaE~elDPvTLHN~A-l~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQA-LMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cccccCCchhhhHHH-HhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 345677765542 22445677778888888899999888899999999999999999998854
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00021 Score=76.97 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=57.1
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
..+.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445566666666666665 3444 3456666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 047408 681 KKLREKIS 688 (830)
Q Consensus 681 ~~~~~~m~ 688 (830)
...++...
T Consensus 90 ~~~~~~al 97 (356)
T PLN03088 90 KAALEKGA 97 (356)
T ss_pred HHHHHHHH
Confidence 77666554
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.79 E-value=0.13 Score=58.96 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCC
Q 047408 629 IWGSLLCGCRIHHEVK---LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNP 696 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~ 696 (830)
+-+.|+..|++.++.. +|+-++|..+...|.|...-..|..+|.-.|-...|.++++.+.-+.+.-+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4578888999888754 5667778888899999988899999999999999999999988766665543
No 138
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.3e-05 Score=50.02 Aligned_cols=31 Identities=32% Similarity=0.659 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 555 (830)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.71 E-value=0.00072 Score=72.56 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=102.0
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccC
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSG 573 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g 573 (830)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .|... ....-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667777889999999999998877777777888888889999999999999874 45443 3443445578899
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047408 574 LVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMPVAP 625 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 625 (830)
+++.|+++.+.+. .+.|+ ..+|..|+..|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999887 56775 6689999999999999999999999998654
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.5e-05 Score=49.35 Aligned_cols=31 Identities=48% Similarity=0.766 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGF 263 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 263 (830)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.67 E-value=0.00058 Score=62.46 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=86.9
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047408 546 TFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P 622 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 622 (830)
+|++... ..|+.. ....+...+...|++++|.+.|+.... ..| +...+..+...|.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 566554 355566777888899999998888763 234 4677788888999999999999888876 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 623 VAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 623 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 445 46778778888899999999999999999999987653
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00047 Score=57.77 Aligned_cols=92 Identities=26% Similarity=0.310 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 675 (830)
+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999988876 34443 4677778888888899999999999999999998888999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 047408 676 KWEEVKKLREKISR 689 (830)
Q Consensus 676 ~~~~A~~~~~~m~~ 689 (830)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998876654
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.65 E-value=0.0019 Score=75.67 Aligned_cols=196 Identities=9% Similarity=0.077 Sum_probs=139.6
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCCh---------
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDL--------- 524 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~--------- 524 (830)
.+...+..++..+-..++++++.++.....+.. +.....|-.+...|...++.++|..+ .-.. ..+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHH
Confidence 344556678888889999999999998666643 33344444555578888888887776 2221 1222
Q ss_pred ----------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 047408 525 ----------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 525 ----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 593 (830)
..+-.+..+|.+.|+.++|...++++++. .|+.. ..+.+...++.. ++++|.+++......
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 34556777888889999999999999994 56655 678888888888 999999998877643
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 594 KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD---------------------ATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 594 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
|....++.++.+++.++ ...|+ ..+|--|-.-|+..++++.+..+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 33344555555555554 22222 2344444467788889999999999
Q ss_pred HHhccCCCCcchHHHHHHHHh
Q 047408 652 HVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~ 672 (830)
.+++.+|.|..+..-|+..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999888777777776
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.60 E-value=0.0014 Score=60.79 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA----TIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 645 (830)
.++...+...++.+..+++-.| .....-.+...+...|++++|.+.|+.. ...||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555666666666655433221 1222333455666677777777777665 122332 344455566677777777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
|...++.. .-.|-.+..+.+++++|.+.|++++|...++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777552 22333455667788888888888888877664
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.59 E-value=7.1e-05 Score=62.00 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 608 TGNLSEAYRFIEMM----PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 608 ~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
.|++++|+.+++++ |..|+...|-.+..++...|++++|..++++ .+.+|.++.....++..|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777776 3223456677778888888888888888888 777787777777889999999999999888
Q ss_pred HHH
Q 047408 684 REK 686 (830)
Q Consensus 684 ~~~ 686 (830)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.59 E-value=0.00078 Score=59.86 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLLAN 669 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 669 (830)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334455555566666666655554 12222 2344445555666666666666666666666554 334566666
Q ss_pred HHhhhcCHHHHHHHHHHHHh
Q 047408 670 VYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 670 ~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|...|++++|.+.++.+.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 66666666666666665554
No 147
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00051 Score=68.46 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=67.4
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHE 642 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 642 (830)
..-..+.+++++|+..|.... .+.|+- ..|..=.-+|.+.|..++|.+--+.. .+.|. ..+|..|.-++...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 344566777888888887776 567753 44444566788888888887766554 56665 3678888888888888
Q ss_pred HHHHHHHHHHHhccCCCCcch
Q 047408 643 VKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+++|++.|+++++++|++..+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHH
Confidence 888888888888888887643
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.53 E-value=0.0002 Score=56.74 Aligned_cols=64 Identities=25% Similarity=0.252 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc-CHHHHHHHHHHHHh
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE-KWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~ 689 (830)
++.+|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999998877653
No 149
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.00022 Score=56.18 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=43.1
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
...|+++.|+..++++++.+|+++.++..|+.+|.+.|++++|.++++.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999999999998877554
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0048 Score=59.96 Aligned_cols=179 Identities=15% Similarity=0.093 Sum_probs=129.4
Q ss_pred cCCHHHHHHHhhhCCC--------CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH-HHHccCCH
Q 047408 506 CGVLVLARSLFDMIPA--------KDL-ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLY-ACSHSGLV 575 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~--------~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~ 575 (830)
..+.++..+++.++.. ++. ..|..++-+....|+.+-|...++++... + |.+.-...+=. -+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3467888888877641 122 23444555666778889999999998875 3 66654332221 24557899
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 576 DEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 576 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++|.+++++..++- +.|...|--=+-++-..|+--+|++-+.+. .+..|...|.-|-.-|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999988652 224566666666677778877888776665 45678899999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHhhhcC---HHHHHHHHHHHH
Q 047408 654 FELEPDNTGYYVLLANVYAEAEK---WEEVKKLREKIS 688 (830)
Q Consensus 654 ~~l~p~~~~~~~~l~~~y~~~g~---~~~A~~~~~~m~ 688 (830)
+=+.|-++..+..+++++.-.|- .+-|.+.+....
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999888775 344555555444
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.0032 Score=70.84 Aligned_cols=138 Identities=14% Similarity=0.057 Sum_probs=70.9
Q ss_pred CCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 047408 520 PAKDLISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 520 ~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 593 (830)
...|...|...+.|.... +...+|+++|++.++ ..||... +..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345777888887775432 236789999999998 6888753 33222211110 01111
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 594 KLEHYACMVDLLSRTGNLSEAYRFIEMM---P-VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 594 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.. .++++.+.+..++. + ...++.+|.++.-.....|++++|...++++++++| +...|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 00 01122222222221 1 122334455554444445666666666666666666 3455666666
Q ss_pred HHhhhcCHHHHHHHHHHHH
Q 047408 670 VYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 670 ~y~~~g~~~~A~~~~~~m~ 688 (830)
+|...|+.++|.+.+++..
T Consensus 462 ~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666555443
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.44 E-value=0.26 Score=53.35 Aligned_cols=210 Identities=12% Similarity=0.080 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---CHHHHHHHhhhCC----CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047408 475 ERGREIHGYILRHGISADRNVANAIVDMYVKCG---VLVLARSLFDMIP----AKDLISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
+++..+++..+..-...+..+|.++.+.--..- ..+.....+++.. ..-..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555554333334445544443211111 1333334444332 222347778888777777889999999
Q ss_pred HHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 047408 548 NDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM---PV 623 (830)
Q Consensus 548 ~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~ 623 (830)
.+..+.+..+-.+ ...+++. +.-+++.+-|.++|+.=.+++|-.| +.-.+.+|-|.+-++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888444 4444444 4456888999999998776665443 44567889999999999999999987 23
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 624 APD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT----GYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 624 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
.|| ..+|..+|.--..-||+.....+-++.+..-|.+. ..-..+.+.|.=.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 47999999999999999999999888876655221 12345556666666655544444433
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.42 E-value=0.4 Score=55.14 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=121.3
Q ss_pred HHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHH
Q 047408 73 FCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCA--DLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKE 150 (830)
Q Consensus 73 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 150 (830)
....+++.+|+....+..+..|+ ..|..+++++. +.|..++|..+++.....+ ++|..+...+...|...|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhH
Confidence 34567788888888887766543 24555565543 6777888887776655444 3346777888888888888888
Q ss_pred HHHHHhcCCCCCc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCC-------CHHHHH
Q 047408 151 GRRVFNKIDNGKV--FIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSR-------RVKDAH 221 (830)
Q Consensus 151 A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-------~~~~A~ 221 (830)
|..+++.....++ .....+..+|++-+.+.+-.+.--+|-+ .++-+++.|=++++......... -+.-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 8888887764433 3334455566666655443222222222 23334555555555544322111 223444
Q ss_pred HHHhhCCCCC--c---chHHHHHHHHHhCCChhHHHHHHHH-HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 222 KLFDELSDRD--V---VSWNCMISGYIANGVAEKGLEVFKE-MLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 222 ~lf~~m~~~~--~---~~~n~li~~~~~~g~~~~A~~l~~~-m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
+.++.+.+.+ . .-.-.-...+-..|.+++|++++.. ..+.-...+...-+--+.-....+.+..-.++-..++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4555444332 1 1111112233456677777777733 33322222333333444455556666666666666666
Q ss_pred hCCC
Q 047408 296 ACFS 299 (830)
Q Consensus 296 ~g~~ 299 (830)
.|.+
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 6544
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0012 Score=65.94 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTG 609 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g 609 (830)
.-+.+.+++.+|+..|.+.++ +.|+..+ |..=..||++.|.++.|++-.+... .+.|. ...|..|.-+|.-.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 457788999999999999998 7776655 5556688999999999999888776 57776 788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHH
Q 047408 610 NLSEAYRFIEMM-PVAPDATIWGSL 633 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p~~~~~~~l 633 (830)
++++|++.|++. .+.|+..+|.+=
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHH
Confidence 999999999886 788987665543
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00048 Score=53.71 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+...+...|+++.|+..++++++..|+++..+..++.++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567788888888888888888888888888888888888888888888887754
No 156
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.018 Score=56.63 Aligned_cols=175 Identities=10% Similarity=0.025 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047408 480 IHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE 559 (830)
Q Consensus 480 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 559 (830)
+.+.+.......+......-...|.+.|++++|.+.......-+....| +..+.+..+.+-|.+.+++|++ --+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchH
Confidence 3344444444444344444455688889999999888874433333333 3345566778888888888886 2345
Q ss_pred hHHHHHHHHHH----ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 047408 560 VSFISVLYACS----HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSL 633 (830)
Q Consensus 560 ~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~l 633 (830)
.|.+-|..++. -.+.+.+|.-+|++|..+ ..|+..+.+-+..+....|+++||+.++++. .-..++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 56666665543 345677888888888643 4556666666666666777777777777765 222244444444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhccCCCCc
Q 047408 634 LCGCRIHH-EVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 634 l~~~~~~g-~~~~a~~~~~~~~~l~p~~~ 661 (830)
+-.-...| +.+--.+...++....|+++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 44333333 44455566666666677654
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0022 Score=56.87 Aligned_cols=101 Identities=9% Similarity=0.024 Sum_probs=59.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGC 637 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~ 637 (830)
.+...+...|++++|.+.|..+...+.-.| ....+..+..++.+.|++++|.+.++.. ...|+ ..+|..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444455555555555555543321111 1233444666666677777776666654 22232 34566677777
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
...|+.+.|...++++++..|+++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888765443
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.33 E-value=0.0014 Score=62.50 Aligned_cols=93 Identities=14% Similarity=-0.069 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
...|..++..+...|++++|+..+++. .+.|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445666777788889999999888876 33333 3578889999999999999999999999999999999999999
Q ss_pred HHh-------hhcCHHHHHHHHHHH
Q 047408 670 VYA-------EAEKWEEVKKLREKI 687 (830)
Q Consensus 670 ~y~-------~~g~~~~A~~~~~~m 687 (830)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 998 788888766655443
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.32 E-value=0.0085 Score=55.48 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=73.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-h---HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHH
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-V---SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMV 602 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv 602 (830)
.++..+ ..|+...+.+.++++... .|+. . ....+...+...|++++|...|+..... .-.|. ....-.|.
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 344444 366677777777777764 3333 1 2223335566677777777777776643 22221 12333456
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 603 DLLSRTGNLSEAYRFIEMMPVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
.++...|++++|+..++..+..+ .+..+..+...+...|+.++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 67777788888887777653222 34556666667777888888888777653
No 160
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.017 Score=60.05 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc
Q 047408 602 VDLLSRTGNLSEAYRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 675 (830)
.+...+.|++.+|.+.+.+. .+.|+ +..|.....+....|+.++|+.-.+.+++++|.-...|..-++.|...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999886 55554 4455555566788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 047408 676 KWEEVKKLREKISR 689 (830)
Q Consensus 676 ~~~~A~~~~~~m~~ 689 (830)
+|++|.+-++..-+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.30 E-value=0.0044 Score=59.36 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD--EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYA 599 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 599 (830)
....|..+...|...|++++|+..|++....+..|+ ...+..+...+.+.|++++|..++..... +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777777778888888888888776433332 23566666777777888888887777663 3343 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
.+..+|...|+...+..-++.. ...++.|...++++++++|++ |..+.+.+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666666655554333221 113677888888999999886 5555555555443
No 162
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.29 E-value=0.00013 Score=48.14 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=30.6
Q ss_pred HHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 650 AEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 650 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
++++++++|+++.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.019 Score=55.94 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=123.9
Q ss_pred CCCch-hHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 047408 489 ISADR-NVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMI---AGYGMHGFGCDAIATFNDMRQAGIEPDEVSFIS 564 (830)
Q Consensus 489 ~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ 564 (830)
..++. .++--++-+..-+|+.+.|..+++.+..+=+-++..+. .-+-..|++++|+++++..++.. +-|.+++..
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 44443 34555666677889999999999886533222222211 12456799999999999999875 445567776
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHH- 641 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g- 641 (830)
=+...-..|.--+|++-+....+ .+..|.+.|.-+.++|...|++++|.=.++++ -+.| ++..+..|...+...|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 66666677877788887777664 34567899999999999999999999999997 3455 4556666666544443
Q ss_pred --CHHHHHHHHHHHhccCCCCc
Q 047408 642 --EVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 642 --~~~~a~~~~~~~~~l~p~~~ 661 (830)
|++.++..+++++++.|.+.
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhH
Confidence 88999999999999999653
No 164
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.0042 Score=57.01 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
...-+-..|++++|+.+|+-+ -..| +..-|..|...|...++++.|...+..+..++++|+.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334455789999999999886 2233 56678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
.|..-++...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999887764
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.26 E-value=0.0022 Score=61.45 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=63.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
..|..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566666777777777777777765 22222 35788888888999999999999999999999999888899999
Q ss_pred HhhhcC
Q 047408 671 YAEAEK 676 (830)
Q Consensus 671 y~~~g~ 676 (830)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 988776
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.23 E-value=0.0029 Score=68.20 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
+...|++++|+++|+.+. .+.|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344566666666666555 23342 445566666777777777777777665 4455 45677777788888888888
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
|+..++++++++|+++.....+..+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888887777766554444
No 167
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.22 E-value=0.022 Score=67.05 Aligned_cols=170 Identities=9% Similarity=0.084 Sum_probs=106.8
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCCchHHHH
Q 047408 229 DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSG-CANCGALMFGRAVHAFALKACFSKEISFNNT 307 (830)
Q Consensus 229 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 307 (830)
..+...|..|+..|...+++++|.++.++-.+ ..|+...+-..+.. +.+.+....+-.+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 34667899999999999999999999986655 45666554333322 2223332222222 3
Q ss_pred HHHHhhcCCChHHHHHHHhhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcch
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGE--RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLE 385 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 385 (830)
+++...+..++.....+.+.|.. .+..++-.+..+|-+.|+.++|...++++++.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33333344444333333333332 123356667778888888888888888888765 33455666666667777 888
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDI 434 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~ 434 (830)
.|+++...++.. |....++..+..++.++..-++
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~ 200 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS 200 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc
Confidence 888877776544 6666778888888877765543
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.16 E-value=0.0022 Score=54.22 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGI-AADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYI 243 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~ 243 (830)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +. ..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~l----D~----------------------~~ 80 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKREL----DS----------------------ED 80 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccc----cc----------------------hh
Confidence 334566777777999999999999999999 9999999999999887541 10 11
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 047408 244 ANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCA 278 (830)
Q Consensus 244 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 278 (830)
-.++.-+.+.+|+.|...+++|+..||+.++..+.
T Consensus 81 ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 81 IENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 22345678899999999999999999999998764
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.13 E-value=0.4 Score=49.91 Aligned_cols=240 Identities=18% Similarity=0.152 Sum_probs=157.6
Q ss_pred hcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchh
Q 047408 415 KCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRN 494 (830)
Q Consensus 415 k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 494 (830)
-.|+.++|++-|+.|...-. |+ ..-+..+.-.--..|+.+.+++.-+..-..- +.-..
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPE---------------tR------llGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPE---------------TR------LLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hcCchHHHHHHHHHHhcChH---------------HH------HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 35888888888888854210 00 0111122222345677777777766655432 23356
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC-----CCChh--hHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhH-HH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP-----AKDLI--SWTIMIAGYGM---HGFGCDAIATFNDMRQAGIEPDEVS-FI 563 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~t-~~ 563 (830)
.+.+++...+..|+++.|.++.+.-. ++|+. .--.|+.+-++ .-+...|...-.+..+ +.||.+- -+
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 77889999999999999999998643 45543 22334433322 2456667766666555 7888874 44
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD-ATIWGSLLCGCR 638 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~ 638 (830)
.-..++.+.|++.+|-.+++.+- ...|.+......+ +.|.|+.. +.-+++. .++|| ...-.++..+-.
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY~--~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAl 340 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAW---KAEPHPDIALLYV--RARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAAL 340 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHHH--HhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 45578899999999999999986 4566665554333 44566432 2222211 34665 456666777778
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh-cCHHHHHHHHHH
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA-EKWEEVKKLREK 686 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~ 686 (830)
..|++..|+.-++.+...+|. .++|.+|+++-... |+-+++....-+
T Consensus 341 da~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 341 DAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred hccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 889999999999999999998 47899999997766 887776665443
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0017 Score=50.62 Aligned_cols=61 Identities=26% Similarity=0.276 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
+...+.+.|++++|++.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999987 55674 57899999999999999999999999999999874
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.03 E-value=0.0019 Score=51.70 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+...++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999887765
No 172
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.02 E-value=0.64 Score=49.49 Aligned_cols=187 Identities=13% Similarity=0.110 Sum_probs=110.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC--CCChh-------hHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP--AKDLI-------SWTIMIAGYG----MHGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
.+..++....+.++...|.+.+.-+. .|+.. +--++-+..+ .+-+..+=+.++++.... ..|..-
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQ 377 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHH
Confidence 44555566667777777777665443 22211 1111222222 223344455566665553 334433
Q ss_pred HHHHH----HHHHccCC-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-----------CCHHHHHHHHHhCCCCC
Q 047408 562 FISVL----YACSHSGL-VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT-----------GNLSEAYRFIEMMPVAP 625 (830)
Q Consensus 562 ~~~ll----~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-----------g~~~eA~~~~~~m~~~p 625 (830)
.+.-+ .-+-+.|. -+.|+.+++.+. .+.|.....-..|-.+.+. -++=+-+.++++.++.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 22211 22445555 667778777765 3344221222222221111 12334456677776655
Q ss_pred ----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 626 ----DATIWGSLLCG--CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 626 ----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
+..+-|-|-.| ...+|++.++.....=+.++.| ++.+|-+++-.+....+++||.+++..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33566777776 5789999999999999999999 7999999999999999999999998754
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.015 Score=58.60 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=86.9
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCcchHH
Q 047408 592 EP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH---HEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 592 ~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
.| |.+-|--|...|.+.|+.++|..-|.+. .+.| ++.++..+..++... ....++..++++++.++|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6899999999999999999999999887 4555 467777777765333 2678899999999999999999999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.|+-.+...|++.+|...++.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999875543
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.00 E-value=0.017 Score=55.01 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD--EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYAC 600 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 600 (830)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+.+++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34566677777778888888888888876422222 13566666777777888888877777652 3333 334444
Q ss_pred HHHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 601 MVDLLS-------RTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 601 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
+...|. +.|++++|+. .+++|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 555554 2333333222 2345666777888888864
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.99 E-value=0.0069 Score=50.39 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHh
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMM 585 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 585 (830)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|.++|+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666653 3332 33444444444455555555555444
No 176
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.088 Score=51.90 Aligned_cols=116 Identities=18% Similarity=0.114 Sum_probs=57.7
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCC
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCR----IHHE 642 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~----~~g~ 642 (830)
.-|.|.|+.++|.+..... -+.+....=|..+.|..+++-|.+.+++|.--.+..+.+-|..++. -.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 4456666666666554431 1234444445555555566666666665532222233333333321 1224
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+..|.-+|+.+-+.-|..+....-++.+....|||++|..+.+...+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55555555555554444455555555555566666666665555543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.89 E-value=0.022 Score=64.23 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcc--CCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 643 VKLAEKVAEHVFEL--EPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 643 ~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
.+.+...++++..+ +|.++..|..++-++...|++++|...++++.+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 45566666676664 77778889999999999999999999999988755
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.87 E-value=0.23 Score=51.57 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=127.6
Q ss_pred cCCHHHHHHHhhhCC---CCChhhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHH
Q 047408 506 CGVLVLARSLFDMIP---AKDLISWTIMIAG--YGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEG 578 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~---~~d~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a 578 (830)
.|+-..|+++-.+.. ..|....--++.+ -.-.|++++|.+-|+.|.. .|... -+..|.-.-.+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666665554332 2333333333332 2346899999999999986 34332 345555556788999999
Q ss_pred HHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH--HHHHHHHH---HHhcCCHHHHHH
Q 047408 579 WRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMM----PVAPDAT--IWGSLLCG---CRIHHEVKLAEK 648 (830)
Q Consensus 579 ~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~--~~~~ll~~---~~~~g~~~~a~~ 648 (830)
++|-+... +..|.. -.....++..+..|+|+.|+++++.- -+++|.. .--.||.+ -....+...|..
T Consensus 174 r~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 174 RHYAERAA---EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHH---hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99988765 566763 46678889999999999999999875 3566652 33344544 234457888999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+.+..++.|+-...-+.-+..|.+.|+..++..+++.+-+
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 99999999999888888999999999999999999988764
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.85 E-value=0.0015 Score=51.39 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=39.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 607 RTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 607 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
..|++++|+++++++ ...| +..++..+...|...|++++|+..++++...+|+++..+.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666666666665 3334 45566666666777777777777777777777776555555543
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.85 E-value=0.019 Score=53.06 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchH
Q 047408 590 NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM---PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD--NTGYY 664 (830)
Q Consensus 590 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~ 664 (830)
.+.|++.+--.|...+.+.|+..||...|++. ++.-|......+..+...-++...|...++++.+-.|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44455555555555555555555555555554 33344555555555555555555555555555555543 33344
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 665 VLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 665 ~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.+++..|+..|+..+|+.-++...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Confidence 555555555555555555554443
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.68 E-value=0.031 Score=58.10 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA-CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
..|-.++...-+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+...+.++ .+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 356777777777777788888888887432 2233344444333 3335666668999988876543 35567888889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG 662 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 662 (830)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.--..+|+++....+.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999886 22233 359999999999999999999999999998888543
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.67 E-value=0.0039 Score=51.49 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=46.2
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGI-EPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEA 614 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA 614 (830)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777778888887777422 12333444466677777777777777766 1 22232 22233446667777777777
Q ss_pred HHHHHh
Q 047408 615 YRFIEM 620 (830)
Q Consensus 615 ~~~~~~ 620 (830)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=1.3 Score=46.78 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=87.2
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHH
Q 047408 497 NAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVD 576 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~ 576 (830)
+.-|.-+...|+...|.++..+..-||-.-|-..|.+|+..|++++-.++... +-.++-|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778888899998888888888899999999999998876665332 123477888888888889888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047408 577 EGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCR 638 (830)
Q Consensus 577 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 638 (830)
+|..+...+. +.--+.+|.++|.+.+|.+.--+. -|...+.-+..-|.
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence 8888876532 356678888899988887764443 24444444444433
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.58 E-value=0.021 Score=58.28 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLA 668 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~ 668 (830)
.|..-++++.+.|++++|...|+.. ...|+ ..++--+...+...|+++.|...|+++++..|+++ ..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555556667777777776665 22232 23455566677788888888888888887777653 4455667
Q ss_pred HHHhhhcCHHHHHHHHHHHHh
Q 047408 669 NVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 669 ~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888776653
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.52 E-value=0.24 Score=51.63 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----CCH-HHHHHHHHHHHh
Q 047408 573 GLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMMP---VA-----PDA-TIWGSLLCGCRI 639 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m~---~~-----p~~-~~~~~ll~~~~~ 639 (830)
|++++|.++|+....-|.-.-. ...+.-+.+++.+.|++++|.++|++.. .+ .+. ..+...+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555544332221111 2345566777888888888888887751 11 111 112222223455
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 047408 640 HHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.||...|...+++..+.+|.-.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTST
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 6889999999999888888643
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.52 E-value=0.023 Score=50.04 Aligned_cols=85 Identities=18% Similarity=0.042 Sum_probs=65.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHh
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM---PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD---NTGYYVLLANVYA 672 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~ 672 (830)
+..++...|+.++|+.++++. +.... ...+-.+.+.++..|++++|..++++.++-.|+ +....+.++-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345666778888888888875 22221 245667788899999999999999999888787 6667778888899
Q ss_pred hhcCHHHHHHHHH
Q 047408 673 EAEKWEEVKKLRE 685 (830)
Q Consensus 673 ~~g~~~~A~~~~~ 685 (830)
..|+++||.+..-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 9999999988754
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.52 E-value=0.2 Score=46.66 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=97.7
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCH
Q 047408 555 IEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P-----VAPDA 627 (830)
Q Consensus 555 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~-----~~p~~ 627 (830)
..|+...-..|..+....|+..||...|++... |+-. |....-.+..+....|+..+|...+++. . -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777888889999999999999988753 4433 4556667777788889999998888876 2 23443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
-..+...+...|..+.|+..++.++.-.|+ +..-...+.+++++|+.++|..-....
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 344566788899999999999999998887 455666788999999999887654444
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.46 E-value=0.0047 Score=48.71 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHH-EVKLAEKVAEHVFELEP 658 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p 658 (830)
...|..+...+.+.|++++|++.|++. ...|+ ..+|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888899999999888876 55564 578888888999999 79999999999999988
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.45 E-value=0.01 Score=63.52 Aligned_cols=63 Identities=22% Similarity=0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch---HHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY---YVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...|+.+..+|...|++++|...++++++++|+++.+ |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666543 66666666666666666666665554
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.45 E-value=0.047 Score=48.14 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=68.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHH
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLS 606 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~ 606 (830)
+..++-..|+.++|+.+|++....|+..... .+..+.+++...|++++|..+++....++.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4567778899999999999999988776533 577788999999999999999998876542211 1122233445778
Q ss_pred hcCCHHHHHHHHHh
Q 047408 607 RTGNLSEAYRFIEM 620 (830)
Q Consensus 607 r~g~~~eA~~~~~~ 620 (830)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887644
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.44 E-value=0.039 Score=52.96 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=86.6
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 047408 152 RRVFNKI--DNGKVFIWNLLMHEYSK-----TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLF 224 (830)
Q Consensus 152 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf 224 (830)
...|+.. ..+|-.+|..+|..|.+ +|..+=....+..|.+.|+.-|..+|+.||+.+=+ |.. .-..+|
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f----vp~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF----VPRNFF 108 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc----ccccHH
Confidence 4455554 45667777777777764 47777788889999999999999999999998864 210 011111
Q ss_pred hhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-hHHHHHHHHHHHH
Q 047408 225 DELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA-LMFGRAVHAFALK 295 (830)
Q Consensus 225 ~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~~~~l~~~~~~ 295 (830)
+.+ --- .-.+-+-|++++++|...|+-||..|+..+++.+++.+. ....+++.-++-+
T Consensus 109 Q~~-----------F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 109 QAE-----------FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHH-----------hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 111 001 122456799999999999999999999999999977663 3344444444443
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.43 E-value=0.048 Score=49.98 Aligned_cols=90 Identities=8% Similarity=-0.047 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVD 603 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~ 603 (830)
..-++..-+.+.|++++|..+|+-... +.|.... |..|...|...|++++|+..|.... -+.|+ ...+-.+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHH
Confidence 333444445556666666666666555 4555443 3344444445556666666555543 23332 344444445
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047408 604 LLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~ 620 (830)
+|...|+.++|.+-|+.
T Consensus 112 c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 112 CYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 55555555555555443
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.43 E-value=0.021 Score=54.79 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=65.5
Q ss_pred CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC----------------CHHHHH
Q 047408 521 AKDLISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG----------------LVDEGW 579 (830)
Q Consensus 521 ~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----------------~~~~a~ 579 (830)
.+|-.+|..+|..|.++ |+.+=....++.|.+-|+.-|..+|+.||..+=+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45556666666665533 566666666777777777777777877777665421 346788
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 047408 580 RFFNMMRYECNIEPKLEHYACMVDLLSRTGNL 611 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 611 (830)
+++++|. ++|+-||.+++..+++.+|+.+..
T Consensus 124 ~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 9999997 669999999999999999887753
No 194
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.041 Score=57.68 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=85.1
Q ss_pred HHHHhcCCHHHHHHHHHhC--------CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM--------PVAP---------DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m--------~~~p---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
+.|.+.|++..|...|++. +..+ -..+++.|...|.+.+++..|+....++++++|+|.-+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455666666666655542 1111 1235666777788899999999999999999999999999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.-+.+|...|.+++|...++++.+ ..|.+..|...|..+..++++
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875 467788999999888877765
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.35 E-value=0.043 Score=59.41 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHH
Q 047408 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYA 414 (830)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 414 (830)
+..++|+.|.+.|..++++.+++.=...|+-||.+|++.|+..+.+.|++..|.++...|...+...+..++.--+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 44577777777777777777777777777777777777777777777777777777777776665555555544444444
Q ss_pred hc
Q 047408 415 KC 416 (830)
Q Consensus 415 k~ 416 (830)
++
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 44
No 196
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.34 E-value=1.2 Score=43.83 Aligned_cols=213 Identities=19% Similarity=0.116 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHHHhCCC-CchhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 047408 473 ALERGREIHGYILRHGIS-ADRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKDLISWTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l 546 (830)
....+...+......... ............+...+.+..+...+.... ......+..+...+...+...++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444443322 135677778888888999998888887654 33455677777788888889999999
Q ss_pred HHHHHHcCCCCChhHHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 547 FNDMRQAGIEPDEVSFISVLY-ACSHSGLVDEGWRFFNMMRYECNIEP----KLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+.........+. ........ ++...|.++++...+..... ..| ....+......+...|+.++|...+.+.
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999887433331 22222223 78899999999999998742 333 2334444445567789999999988886
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 622 -PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 622 -~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...|+ ...+..+...+...++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444 577888888899999999999999999999998666777788888877789999887776654
No 197
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.35 Score=50.78 Aligned_cols=263 Identities=13% Similarity=0.017 Sum_probs=139.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcc-hHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChH
Q 047408 342 GYAREGVFDGAIRLFRGMVREGIEPDVY-AITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMA 420 (830)
Q Consensus 342 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 420 (830)
.+.+...+.+|+..+....+.. ||.. -|..-+..+...++++.+.--.+.-++.. +.......-.-..+...+...
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 4455556666777776666542 3332 22223333333444444333222222211 011112223334444555555
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC--CCCccccccchhhh-cchhhHHHHHHHHHHHHHhCCCCchhHHh
Q 047408 421 DAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF--EPDGVTMACILPAC-ASLAALERGREIHGYILRHGISADRNVAN 497 (830)
Q Consensus 421 ~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~--~pd~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 497 (830)
+|.+.++. .++ + ....++.......... +|.-.++-.+-.-| ...++.+.+.++-..+.+..- ...+.
T Consensus 135 ~A~~~~~~---~~~--~-~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~a 205 (486)
T KOG0550|consen 135 EAEEKLKS---KQA--Y-KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEA 205 (486)
T ss_pred HHHHHhhh---hhh--h-HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHH
Confidence 66655551 111 1 0111333333332222 34444444443333 467888888888777776431 11122
Q ss_pred HHH--HHHHhcCCHHHHHHHhhhCCCCChh---------------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 498 AIV--DMYVKCGVLVLARSLFDMIPAKDLI---------------SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 498 ~Li--~~y~k~g~~~~A~~~f~~m~~~d~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
.++ ..+--.++.+.|..-|++...-|+. .|.-=.+-..++|++.+|.+.|.+.+. +.|+.+
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCcccc
Confidence 222 2233457888899999877643332 233333456788999999999999886 555544
Q ss_pred -----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 561 -----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 561 -----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
.|.....+..+.|+.++|+.-.+... .|.|. +..|--=..++.-.+.|++|.+-+++.
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567788999999998887765 44443 233333334455567889998888775
No 198
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.28 E-value=2 Score=45.84 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=81.6
Q ss_pred HHhcCC-HHHHHHHhhhCC---CCChhhHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCCChhH----HHHHHH
Q 047408 503 YVKCGV-LVLARSLFDMIP---AKDLISWTIMI----AGYGMH---GFGCDAIATFNDMRQAGIEPDEVS----FISVLY 567 (830)
Q Consensus 503 y~k~g~-~~~A~~~f~~m~---~~d~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~Pd~~t----~~~ll~ 567 (830)
|-+.|. -++|.++++.+. .-|...-|... ..|.+. ....+-+.+-+-..+.|+.|-.+. -+.|..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 444454 777888877654 34555444432 233322 123444444445556788876654 233333
Q ss_pred H--HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 047408 568 A--CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL 633 (830)
Q Consensus 568 a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 633 (830)
| +-..|++.++.-+-.... .+.|++.+|..++-.+....+++||.+++.+.| |+..+|++=
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 3 456788888877766665 688999999999888889999999999999986 576666643
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.26 E-value=0.035 Score=60.09 Aligned_cols=118 Identities=12% Similarity=0.056 Sum_probs=94.6
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHh--CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CCChhhHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRH--GISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AKDLISWT 528 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~ 528 (830)
+.+.+.+..+++.|.+..+++.++.++-..... ....-..+..++|..|.+.|..++|..+++.=. -+|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 556677788888898888899888887776654 222334555689999999999999999887533 47888999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS 572 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 572 (830)
.+|..+.+.|++..|.++..+|...+...+..|+.--+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888888888887777777765
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.23 E-value=0.007 Score=42.72 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.+|..+..++...|++++|+.+++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888899999999999999999999999999988877764
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.21 E-value=0.35 Score=53.28 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=40.1
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC
Q 047408 266 DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE 330 (830)
Q Consensus 266 d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 330 (830)
+..+...+-.-+.+...+..|-+++..+-.. .+++++....+++++|.++-+..|+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3344444444455666777777777665432 5688999999999999999999987
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.20 E-value=0.065 Score=45.60 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHccC--------CHHHHHHHHHHhHhhcCCCCCcc
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGI-EPDEVSFISVLYACSHSG--------LVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
|-...|.-+...|++.....+|+.+++.|+ -|...+|+.+|.+..+.. .+-+.+.+++.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 444567777777999999999999999999 899999999998866543 244566777777744 7888888
Q ss_pred hHHHHHHHHHh
Q 047408 597 HYACMVDLLSR 607 (830)
Q Consensus 597 ~y~~lv~~l~r 607 (830)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.19 E-value=0.014 Score=46.61 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=52.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999999887 5556 45778888888899999999999999999999987655443
No 204
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.13 E-value=0.056 Score=56.14 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047408 560 VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR-TGNLSEAYRFIEMM--PVAPDATIWGSLLCG 636 (830)
Q Consensus 560 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~ 636 (830)
.+|..++..+.+.+.++.|+.+|....+.-.+ +...|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788889999999999999999999743222 34556666666444 56666699999987 345678899999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
+...|+.+.++.++++++..-|.+. ..|....+.-.+.|+++.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766654 57888889999999999999999888763
No 205
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.09 E-value=1.7 Score=45.81 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcch
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLE 385 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 385 (830)
+.-|.-+...|....|.++-.+..-||-.-|-..|.+|+..++|++-.++... +-.++-|-.++.+|...|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44566667789999999999999999999999999999999999987665432 234588999999999999998
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 429 (830)
+|..+... ..+..-+.+|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 88877765 22356789999999999998775444
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.96 E-value=0.32 Score=49.27 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.-|.+.|.+.-|..-++.+++--|+.+ .+...|.+.|...|.-++|..+.+...
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 347788999999999999998888754 467788999999999999999876554
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.76 E-value=1.3 Score=47.28 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=104.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC---Chhh----HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPAK---DLIS----WTIMIAGYGM---HGFGCDAIATFNDMRQAGIEPDEVSFISVLY 567 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 567 (830)
.|+-.|-...+++.-.++++.++.. ++.. ---..-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444688889999999999988743 2221 1123345556 7999999999999776666777777766554
Q ss_pred HHH---------ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH----HHHH---HhC-----CCCCC
Q 047408 568 ACS---------HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEA----YRFI---EMM-----PVAPD 626 (830)
Q Consensus 568 a~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA----~~~~---~~m-----~~~p~ 626 (830)
.+- .....++|.+.|... +.+.|+..+--.++-++..+|...+. .++- ... ...+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 432 123477788777653 46666654433445555556643322 2222 111 12343
Q ss_pred HHHH--HHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 627 ATIW--GSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 627 ~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
..-| .+++.++...||.+.|.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 4444 689999999999999999999999998875
No 208
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=2.1 Score=48.82 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=65.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcc---
Q 047408 305 NNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACD--- 381 (830)
Q Consensus 305 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--- 381 (830)
+-.+|+.+.-.|+.++|-.+.-.|-..+..-|.-.+.-+...++......+ +....-+.+...|-.+|..+...
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~~~~~ 471 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLASDVK 471 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHHHHHH
Confidence 355666666677777777777777666666666666666666655443222 11111112223333344333330
Q ss_pred ----------Ccchhhhh----HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 047408 382 ----------GLLEIGKD----VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDI 434 (830)
Q Consensus 382 ----------~~~~~a~~----~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~ 434 (830)
+++-.+.. +..+..+. .-+..+.-.|+..|...+++.+|..++-...++++
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 00000000 01111111 11223444599999999999999999888777654
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.65 E-value=0.16 Score=47.00 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=71.5
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEP--KLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 646 (830)
....|+.+.+.+.+..+..-|.=.+ +... ...+....+.++++- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3455666677776666654432211 1111 122223333333321 23456677778899999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH-----hCCCcCCC
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS-----RRGLKKNP 696 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~g~~~~~ 696 (830)
...+++++..+|-+...|..+..+|...|+..+|.++++.++ +-|+.|.|
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999988775 34665543
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.61 E-value=3.5 Score=42.95 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hh-HHHHHHHHHHccCCHHHHHHHHHHhHhhc-CCCCC--cchH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-----EV-SFISVLYACSHSGLVDEGWRFFNMMRYEC-NIEPK--LEHY 598 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-----~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~y 598 (830)
..+...+.+.|++++|+++|++....-...+ .. .|...+-.+...|++..|.+.|+...... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 3456677888888888888888776432221 11 23333445566788888888888765221 22222 1223
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHhC
Q 047408 599 ACMVDLLSR--TGNLSEAYRFIEMM 621 (830)
Q Consensus 599 ~~lv~~l~r--~g~~~eA~~~~~~m 621 (830)
..|++++-. ...+++|..-|+++
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccc
Confidence 344555432 34566666666665
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.57 E-value=0.091 Score=45.70 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHhhhcC
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT----GYYVLLANVYAEAEK 676 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 676 (830)
-++...|++++|++.|.+. -+-| .+..||.-..+++..|+.++|..-+++++++.-+.. ..|+.-+-+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999988876 3334 678899999999999999999999999999864432 358888999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 047408 677 WEEVKKLREKISRRGL 692 (830)
Q Consensus 677 ~~~A~~~~~~m~~~g~ 692 (830)
-++|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999888776553
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.45 E-value=0.16 Score=51.93 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=33.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM----PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
+..+|...|++++|...|+.+ |..| ....|-.+...+...|+.+.|...++++++..|++.
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 334444444444444444443 2111 123344445556677788888888888888777754
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=95.45 E-value=0.7 Score=50.00 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=106.8
Q ss_pred CCHHHHHHHhhhCCCCCh---hhH--HHHHHHHHhc-----CChHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHc----
Q 047408 507 GVLVLARSLFDMIPAKDL---ISW--TIMIAGYGMH-----GFGCDAIATFNDMR-QAGIEPDEVSFISVLYACSH---- 571 (830)
Q Consensus 507 g~~~~A~~~f~~m~~~d~---~~~--~~li~~~~~~-----g~~~~A~~l~~~m~-~~g~~Pd~~t~~~ll~a~~~---- 571 (830)
..+..++. -...+..+. ..| ..++.|.... -..+.|+.+|.+.. .+.+.|+...-.+.+.-|.-
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 33444444 223334455 567 6666665542 23567888999988 23377876643333333321
Q ss_pred ------cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047408 572 ------SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHE 642 (830)
Q Consensus 572 ------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 642 (830)
.....+|.+.-+... .+.| |......+..+++-.|+++.|...|++. .+.|| +.+|-.....+...|+
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 223445666555554 4455 4556666777777778888888888887 56676 4566666666777888
Q ss_pred HHHHHHHHHHHhccCCCCcchHH--HHHHHHhhhcCHHHHHHHH
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYV--LLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~--~l~~~y~~~g~~~~A~~~~ 684 (830)
.++|...++++++++|....+-+ ...++|+..+ .++|.+++
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 88888888888888887654433 3444566544 56666654
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.73 Score=45.44 Aligned_cols=186 Identities=13% Similarity=-0.012 Sum_probs=118.0
Q ss_pred HHHHHHHHH-hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CChhh--------HHHHHHHHHhcCChHHHHHH
Q 047408 478 REIHGYILR-HGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KDLIS--------WTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 478 ~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~--------~~~li~~~~~~g~~~~A~~l 546 (830)
+.+|..+.+ .|. -+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.+
T Consensus 125 R~lhAe~~~~lgn-----pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 125 RILHAELQQYLGN-----PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 455666554 232 356777777766666666666654332 23333 35677777778888889999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC
Q 047408 547 FNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA-----CMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+++.++..-+-+.+-...|.+.-.+.|+++.|..+|+...+..+. .+....+ .+...|.-+.++.+|...+.+.
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhhhhhheecccchHHHHHHHhhc
Confidence 999998655556666777778888999999999999976644222 2222233 3334455667788888888777
Q ss_pred CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 622 PV-AP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 622 ~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
+. .| |++.-|+-.-...-.|+...|.+..+.+.+..|....+-..+.|
T Consensus 279 ~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 279 LRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred cccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 43 22 33333332222344578888888888888888876554433333
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=1.6 Score=48.74 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=13.6
Q ss_pred cCChHHHHHHHhcCCCCCc
Q 047408 416 CGSMADAESVFNQMPVKDI 434 (830)
Q Consensus 416 ~g~~~~A~~~f~~m~~~~~ 434 (830)
-|++++|.+++-+|..+|.
T Consensus 747 ~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred hcchhHhhhhhhccchhhh
Confidence 3777777777777776664
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.97 Score=44.62 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=98.0
Q ss_pred HHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 047408 371 ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAM 450 (830)
Q Consensus 371 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m 450 (830)
...++......+.+.....++..+++...+.++.....|..+-.+.|+.+.|...|++..+.+-
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---------------- 243 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---------------- 243 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh----------------
Confidence 3445555555566666667777777776677888888899999999999999998886643211
Q ss_pred HhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhH
Q 047408 451 LQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA---KDLISW 527 (830)
Q Consensus 451 ~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~ 527 (830)
+.|.. ..+..+..+....|.-.+++.+|...|++++. .|++.-
T Consensus 244 ----kL~~~------------------------------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 244 ----KLDGL------------------------------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ----hhhcc------------------------------chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 11111 22223333344456667888889999988764 456667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL 566 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 566 (830)
|.-.-+..-.|+..+|++..+.|++ ..|...+-.+++
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 7666666677999999999999998 567766655444
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.34 E-value=0.1 Score=46.52 Aligned_cols=52 Identities=15% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 047408 590 NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 590 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g 641 (830)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+...-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 55677777788888888888888888777664 55556778888876654433
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.30 E-value=0.19 Score=52.37 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=80.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH---hHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNM---MRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-------PV-APDATI 629 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~-~p~~~~ 629 (830)
|-.|.+.|.-.|+++.|+..++. +.++||-... ...++.+.+.+.-.|+++.|.+.++.. +- .-.+.+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44555555556777777776653 2334443332 345677777788888888888877654 11 112345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc----C--CCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 630 WGSLLCGCRIHHEVKLAEKVAEHVFEL----E--PDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.-+|..+|....+++.|+....+-+.+ + .....++..|++.|...|.-+.|..+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 557777777777888888777655432 2 1234567788888888888888877655543
No 219
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.24 E-value=6.9 Score=44.12 Aligned_cols=256 Identities=13% Similarity=0.154 Sum_probs=125.1
Q ss_pred HHHHhhcCCChHHHHHHHhhcCCC-----CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccC
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGER-----SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDG 382 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 382 (830)
-|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-... ...+.++.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le 836 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLE 836 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHH
Confidence 456666667776666666543221 1235777777777777777777776543210 11233333333
Q ss_pred cchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccc
Q 047408 383 LLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMA 462 (830)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~ 462 (830)
++++-+.+- ..++.|....-.+.+|+...|.-++|.+.|-+-..+.
T Consensus 837 ~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk----------------------------- 882 (1189)
T KOG2041|consen 837 LFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK----------------------------- 882 (1189)
T ss_pred hhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----------------------------
Confidence 333322222 2245566677778888888898888888776554332
Q ss_pred cchhhhcchhhHHHHHHHHHHHHH-----------hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHH
Q 047408 463 CILPACASLAALERGREIHGYILR-----------HGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDL---ISWT 528 (830)
Q Consensus 463 ~ll~a~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~ 528 (830)
..+.+|-.+..+.+|.++-....- ..+-.+..+ .--|.++.|.|+.-+|-+++.+|.++.. +.|-
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~l 961 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYL 961 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHH
Confidence 245667777776666554332100 000000001 1125667777776666666666542211 1111
Q ss_pred HHHHHH----HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 529 IMIAGY----GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 529 ~li~~~----~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
-+=..| .-..+..++++-.++....|...|... +..+|...++-++.+..-. | ....|+-.|..-
T Consensus 962 r~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQr 1030 (1189)
T KOG2041|consen 962 RLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQR 1030 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHH
Confidence 110000 111223334444444444443332221 1223333444444332211 1 123455566666
Q ss_pred HHhcCCHHHHHHHH
Q 047408 605 LSRTGNLSEAYRFI 618 (830)
Q Consensus 605 l~r~g~~~eA~~~~ 618 (830)
-.+.|+.+.|++.-
T Consensus 1031 ql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHhchHHHHHHHH
Confidence 67788888887653
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.22 E-value=0.026 Score=45.64 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFEL----EPD---NTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l----~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.+++.+...+...|++++|+..+++++++ .++ -+..+..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777777777777777777643 222 24467888899999999999988877653
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.16 E-value=1.3 Score=49.18 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=102.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHH--HHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 047408 269 TMVTVLSGCANCGALMFGRAVHA--FALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYARE 346 (830)
Q Consensus 269 t~~~ll~a~~~~~~~~~~~~l~~--~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 346 (830)
.|...=+||.+..++..-+-+.+ .+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 34455556666666655554433 3455666566544 33445556778888777654 5
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 047408 347 GVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVF 426 (830)
Q Consensus 347 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 426 (830)
|.-..|+++|.+|+-- -...-+...|.-++-+.+...-.+. ..++.-=.+-..|+...|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6666777777666421 1222333444444444443332211 111111123456667778877777654
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 047408 427 NQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC 506 (830)
Q Consensus 427 ~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 506 (830)
-+- -|--|+ +++-+++. +.+..++..+-.-+-....+..|-+||..+-.. .+++++....
T Consensus 727 ~d~------gW~d~l--idI~rkld---~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~ 786 (1081)
T KOG1538|consen 727 GDH------GWVDML--IDIARKLD---KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVET 786 (1081)
T ss_pred hcc------cHHHHH--HHHHhhcc---hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeec
Confidence 321 121111 11111110 223333333333334445556666666655332 3577788888
Q ss_pred CCHHHHHHHhhhCCC
Q 047408 507 GVLVLARSLFDMIPA 521 (830)
Q Consensus 507 g~~~~A~~~f~~m~~ 521 (830)
+++++|..+-++.++
T Consensus 787 ~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPE 801 (1081)
T ss_pred ccchHhHhhhhhCcc
Confidence 888888888887774
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.04 E-value=6 Score=42.33 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCC--CcchHHH
Q 047408 92 SKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNG--KVFIWNL 168 (830)
Q Consensus 92 ~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~ 168 (830)
.+|+. .+|-.|++-+...+..++.+.++.++... .|--+.+|...++.-....++.....+|.+.... ++..|..
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 34433 48999999999999999999999988653 2222445666666555567888888888876544 5667877
Q ss_pred HHHHHHh
Q 047408 169 LMHEYSK 175 (830)
Q Consensus 169 li~~~~~ 175 (830)
-+.---+
T Consensus 115 Yl~YIRr 121 (660)
T COG5107 115 YLEYIRR 121 (660)
T ss_pred HHHHHHh
Confidence 7764444
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.98 E-value=0.031 Score=45.24 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-------P-VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555555555555443 1 1122 345666667777777777777777776543
No 224
>PRK11906 transcriptional regulator; Provisional
Probab=94.78 E-value=0.36 Score=52.12 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=92.6
Q ss_pred HHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-
Q 047408 563 ISVLYACSHS-----GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR---------TGNLSEAYRFIEMM-PVAP- 625 (830)
Q Consensus 563 ~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r---------~g~~~eA~~~~~~m-~~~p- 625 (830)
..++.+..+. ...+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455554442 2456788899988866678886 5556555443321 22345666666655 4555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+.....+..+....++++.|...++++..++|+.+..+...+++..-+|+.++|.+..++..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 567777777777778889999999999999999999999999999999999999999887643
No 225
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.74 E-value=2.6 Score=42.70 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVRE 362 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 362 (830)
..+|+-|-...-..+|..-+..+..+=...--.+..-|.+.|.+..|+.-|+.+.+.
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 344555555555555555444432211111123445577777777777777777664
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=10 Score=43.44 Aligned_cols=333 Identities=15% Similarity=0.063 Sum_probs=165.0
Q ss_pred HCCCCCChhhHHH-----HHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC---hHHHHHHHhhcCC-
Q 047408 260 NLGFNVDLATMVT-----VLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGD---LDGAIRVFEKMGE- 330 (830)
Q Consensus 260 ~~g~~pd~~t~~~-----ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~---~~~A~~~f~~m~~- 330 (830)
.-|+..+..-|.. +++-+...+.+..+.|+-.++--..... ..++.....-+.+..+ -+-+.++=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466555554443 3445555566666666655553222122 4555666666666532 2334444444544
Q ss_pred -CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCc---
Q 047408 331 -RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGI----EPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSS--- 402 (830)
Q Consensus 331 -~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--- 402 (830)
..-++|..+.+---+.|+.+-|..+++.=...+- -.+..-+...|.-+...|+.+...+++-++...-...+
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4667888888877888888888877653211110 01222344455556666776666665555443210000
Q ss_pred ----hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHH--HHHHh-CC-CCCccccccchhhhcchhhH
Q 047408 403 ----LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLF--VAMLQ-NF-EPDGVTMACILPACASLAAL 474 (830)
Q Consensus 403 ----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f--~~m~~-~~-~pd~~t~~~ll~a~~~~~~~ 474 (830)
...-+.|-.-|+|..+-..-...|+.-...- ++..| +.... +- .+-.......-++|++....
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~---------~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQ---------ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEK 654 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchh---------hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhh
Confidence 0000111111222111111111111110000 00000 00000 00 01111122233344433332
Q ss_pred HHHHHHHH----------HH-HHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHH
Q 047408 475 ERGREIHG----------YI-LRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 475 ~~a~~i~~----------~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 543 (830)
..+.+..+ .+ .+.|......+.+--+.-+..-|+-.+|.++-.+..-||--.|---+.+++..+++++-
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHH
Confidence 21111111 11 12232222223333445556678888888888888878877777778888888888876
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 544 IATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
.++-+.+. + .+-|.-...+|.+.|..+||.+|+.... | +.-.+.+|.+.|++.||.++-
T Consensus 735 ekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 735 EKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHH
Confidence 66655443 2 4556667788888888888888876542 1 125677888888888887654
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.52 E-value=2.4 Score=41.59 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
-.....+.+.|++.+|++.|+++... -|+.. ....+..++...|++++|...|+.....|.-.|... +.-...
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~ 85 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYML 85 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHH
Confidence 34455666778888888888888774 23321 345566777778888888888887776665444321 111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-----------------hHHH
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG-----------------YYVL 666 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-----------------~~~~ 666 (830)
+++........ + ...+..+....|...++.+++.-|+++- .-..
T Consensus 86 g~~~~~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000 0 0012223344555566666666666533 2345
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 047408 667 LANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREG 738 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g 738 (830)
++..|.+.|+|..|..-++.+.+ .-|++......|..+.+...+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~--------------------------~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE--------------------------NYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH--------------------------HSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHH--------------------------HCCCCchHHHHHHHHHHHHHHhC
Confidence 68889999999999988887764 24666666666666665555555
No 228
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.47 E-value=1.9 Score=42.83 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
|-.=+..-.+.|++++|.+.|+.+..+ .|. ..+...++.|.-+.+++++|....++....|+-.|++. |.--+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 333344456777777777777777753 222 23456666677777777777777777776666666643 22233
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------------cchH
Q 047408 603 DLLSRTGNLSEAYRFIEMMP-VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-----------------TGYY 664 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------------~~~~ 664 (830)
.++. .|...+ ..-|. .-...|...++.+++--|++ ++.-
T Consensus 114 kgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 114 KGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3332 111110 00010 01122333334444444443 2234
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 665 VLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 665 ~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
..+++.|.+.|.|.-|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 56788999999999999888888763
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.28 E-value=0.39 Score=52.99 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=83.7
Q ss_pred HHhcCChHHHHHHHH--HHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 047408 534 YGMHGFGCDAIATFN--DMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNL 611 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~--~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 611 (830)
...+|++++++++.. ++.. .++ ..-...++.-+.+.|..+.|+++-..-..+ -++..+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 345677777666654 1111 122 223566667777888888888765443322 3566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 612 SEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 612 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
+.|.+..++.+ +...|..|......+|+++.|+.++++. .-+..|.-+|...|+-+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998877653 7789999999999999999999999884 447788888899998877777766555544
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.25 E-value=0.13 Score=45.79 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=64.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS 572 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 572 (830)
..++.++|.++++.|+++....+.+..=.-| +.+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666677777777777666665432111 111111111 112345778999999999999999
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
|++..|.++.+...+.|+++-+...|..|..-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999987777778777653
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=14 Score=42.42 Aligned_cols=328 Identities=11% Similarity=0.096 Sum_probs=181.8
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhcCCC-ChhhHHHHHHHHhccCCh---hHHHHHHHHHHHhCCCCCccchHHHHHHH
Q 047408 66 YNAEIGRFCEVGNLEKAMEVLYSSEKSKI-DTKTYCSILQLCADLKSL---EDGKKVHSIICESGIVIDDGVLGSKLVFM 141 (830)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~li~~ 141 (830)
-..+|.-+...+.+..|+.+-.-+...-. ....|....+-..+..+. +.+..+-.++... .. + ...+....+-
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~-~-~iSy~~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LT-P-GISYAAIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CC-C-ceeHHHHHHH
Confidence 44567778888888888887766543211 123455555545444332 2222232222221 12 2 4556666666
Q ss_pred HHhCCChHHHHHHHhcCCCC--------CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 047408 142 FVTCGDLKEGRRVFNKIDNG--------KVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGN 213 (830)
Q Consensus 142 y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 213 (830)
--.+|+.+-|+++.+.=+.. +..-+..-+.-..+.|+.+-...++-.|...- +...|...|.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l~------- 586 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTLR------- 586 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHHH-------
Confidence 66889999999988754432 22234555666777788777777766665421 1111111111
Q ss_pred CCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhCCChhHHHHHHHH-H-HH-CCCCCChhhHHHHHHHHhcCCChHH-HHH
Q 047408 214 SRRVKDAHKLFDELSD-RDVVSWNCMISGYIANGVAEKGLEVFKE-M-LN-LGFNVDLATMVTVLSGCANCGALMF-GRA 288 (830)
Q Consensus 214 ~~~~~~A~~lf~~m~~-~~~~~~n~li~~~~~~g~~~~A~~l~~~-m-~~-~g~~pd~~t~~~ll~a~~~~~~~~~-~~~ 288 (830)
....|..++.+.-+ .|.. .+-+.| +.++-.+++.-|.. - .. .-+.+-.......-++|++...... ++.
T Consensus 587 --~~p~a~~lY~~~~r~~~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 587 --NQPLALSLYRQFMRHQDRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred --hchhhhHHHHHHHHhhchh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 12233333332211 1110 111112 22222222222211 0 00 0012222223334445554443211 111
Q ss_pred HHHHH----------HHhCCC-CCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 047408 289 VHAFA----------LKACFS-KEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFR 357 (830)
Q Consensus 289 l~~~~----------~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 357 (830)
+-+.+ .+.|.. .|..+ +--+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-+++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl-~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSL-HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcH-HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11111 122322 23333 4445556678999999999999999999999999999999999998777655
Q ss_pred HHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 358 GMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 358 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
.+. .+.-|.....+|.+.|+.++|+.....+-. +.-.+.+|.++|++.+|.++--+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 543 257788899999999999999988765421 11578999999999999877544
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.07 E-value=3.1 Score=36.66 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=75.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
-.|..++..++..+...+. +..-++-++--...+-+-+-..+.++++-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3466677777777766531 12222222222222222233334444443333222 344444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 616 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.-+-.+. .+.....--|......|.-|.-..++..+++-+..+|...+-+++.|.+.|...++.+++++.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444432 223334445677788899999999999988766667889999999999999999999999999888875
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.06 E-value=6.4 Score=38.45 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=140.7
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHh-CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHH-HH
Q 047408 460 TMACILPACASLAALERGREIHGYILRH-GISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KD-LISWTIMIA-GY 534 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~-~~ 534 (830)
.+..........+.+..+...+...... ........+..+...+...+....+.+.+..... ++ ...+..... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444445555666677776666666553 3345566777778888888999999999987664 22 233333444 78
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhc
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEP----DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLSRT 608 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~P----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~ 608 (830)
...|+.++|...|.+... ..| ....+......+...+..+++...+..... ..|+ ...+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHc
Confidence 899999999999999965 444 223444444556788999999999998873 3333 57788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 609 GNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 609 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
|.+++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998887 44554 455666666666777899999999999999987
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.06 E-value=0.33 Score=48.25 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHhhhCC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC-----------
Q 047408 512 ARSLFDMIP--AKDLISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG----------- 573 (830)
Q Consensus 512 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----------- 573 (830)
-+..|...+ ++|-.+|-+++..+..+ ++.+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355676666 77888999999888755 566767777889999999999999999998876543
Q ss_pred -----CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 047408 574 -----LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLS 612 (830)
Q Consensus 574 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~ 612 (830)
.-+=|+.++++|. .+|+.||.++-..|+++++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2245788999997 6799999999999999999998653
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.87 E-value=1.8 Score=46.86 Aligned_cols=62 Identities=10% Similarity=-0.052 Sum_probs=37.3
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDL----ISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.+...++.+...|.+.|++++|...|++.. .|+. .+|..+..+|+..|+.++|++.+++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666666666666666533 2322 2466666666666666666666666665
No 236
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.85 E-value=3.2 Score=48.32 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=101.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhc-CCCchhhHHHHHHHHHhc---
Q 047408 341 AGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEND-MQSSLYVSNALMDMYAKC--- 416 (830)
Q Consensus 341 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~k~--- 416 (830)
..+.-.|+++.|++.+-+ ..+...|.+.+...|..+.-..-.+... ..++... -.+...-+..||..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888999888776 3345567777777666554322222111 2221111 011124567888888864
Q ss_pred CChHHHHHHHhcCCCCCchhH-HHHHHHH-------HHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 417 GSMADAESVFNQMPVKDIVSW-NTMIGAL-------DLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 417 g~~~~A~~~f~~m~~~~~~~~-n~~i~al-------~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
.+..+|...|--+...+...- +....++ +-|..+...-.+|..-...++.-..++ .+
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~L---------------i~ 405 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSL---------------IK 405 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGG---------------GT
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccc---------------cC
Confidence 577888888766643321111 1111111 111111111133332222222210000 01
Q ss_pred CCCch-h---HHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHH
Q 047408 489 ISADR-N---VANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDEVSFI 563 (830)
Q Consensus 489 ~~~~~-~---~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~~t~~ 563 (830)
+..+. . +......-....|++++|..+|+-. |+++.|++++.+.+..-+. |+.
T Consensus 406 ~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La------------------~~~d~vl~lln~~Ls~~l~~~~~---- 463 (613)
T PF04097_consen 406 FDDDEDFLREIIEQAAREAEERGRFEDAILLYHLA------------------EEYDKVLSLLNRLLSQVLSQPSS---- 463 (613)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHCSST----
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHcCccc----
Confidence 11111 1 1122334466778999998887654 5778888887776642110 110
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcC----CCC-CcchHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECN----IEP-KLEHYACMVDL-----LSRTGNLSEAYRFIEMMPVAP 625 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p-~~~~y~~lv~~-----l~r~g~~~eA~~~~~~m~~~p 625 (830)
.....-...+....|.++.+....... +.+ ...++..|.++ +...|++++|++.++++++-|
T Consensus 464 ~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 464 SSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp SSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred cccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 000000011223334443333221100 111 13344444443 568999999999999998877
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.82 E-value=0.75 Score=41.52 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 047408 605 LSRTGNLSEAYRFIEMM----PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG 662 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 662 (830)
..+.|++++|.+.|+.+ |..| ...+-..|+.++...+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34677888887777776 4433 2345566788888899999999999999999888764
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.80 E-value=0.62 Score=46.36 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=82.8
Q ss_pred hHHHHHHHhcCC--CCCcchHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHH
Q 047408 148 LKEGRRVFNKID--NGKVFIWNLLMHEYSK-----TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDA 220 (830)
Q Consensus 148 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A 220 (830)
+-..++.|...+ ++|-.+|-+++.-+.. ++..+--...++.|.+.|+.-|..+|+.||..+-+-.-
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------- 122 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------- 122 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------
Confidence 344566777776 6777888888877764 35667677888999999999999999999998754321
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 047408 221 HKLFDELSDRDVVSWNCMISGYIAN-GVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA 282 (830)
Q Consensus 221 ~~lf~~m~~~~~~~~n~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 282 (830)
..-|..-..+..- .+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 123 ------------iP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 ------------IPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------------ccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111222211 1234589999999999999999999999998877663
No 239
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.68 E-value=4.7 Score=39.59 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHH
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPA--KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYAC 569 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~ 569 (830)
.....+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...|++.++. -|+.. -+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 345567789999999999998862 21 235566788999999999999999999884 55544 233333333
Q ss_pred HccCCH-------------HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047408 570 SHSGLV-------------DEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCG 636 (830)
Q Consensus 570 ~~~g~~-------------~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~ 636 (830)
+..... .+|... +..++.-|-.+...++|.+.+..+...--..- -.+..-
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 322211 122333 33444445555555666555544310000000 123445
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHhhhcCHHHHHH
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTG---YYVLLANVYAEAEKWEEVKK 682 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~A~~ 682 (830)
|.+.|.+.-|..-++.+++.-|+.+. ....|+..|.+.|.-+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 78899999999999999999998654 45778888999999885443
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.56 E-value=2.8 Score=38.27 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT-GNLSEAYRFIEMMPVAPDATIWGSLLCG 636 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~ll~~ 636 (830)
+......++..|.+.+.++++..++..+. -|...++.+... ++.+.|.+++++- .+...|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 44455567777777777777777776652 123344444444 7778888877763 255677777766
Q ss_pred HH
Q 047408 637 CR 638 (830)
Q Consensus 637 ~~ 638 (830)
|.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
No 241
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.45 E-value=0.11 Score=33.92 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888899999999999999999998873
No 242
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.74 Score=46.75 Aligned_cols=65 Identities=6% Similarity=0.025 Sum_probs=35.9
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCC-ChhhH---HHHHHHHhccCChhHHHHHHHHHHH
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKI-DTKTY---CSILQLCADLKSLEDGKKVHSIICE 124 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~ 124 (830)
|.|...|-.|-..|.+.|+++.|...|.+..+..+ +|..+ ...+-.-....+-.++..++.++++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 45666676666777777777777777766655433 33322 2222222233445555666666555
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.42 E-value=1.3 Score=48.15 Aligned_cols=217 Identities=16% Similarity=0.093 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH---
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE--- 613 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e--- 613 (830)
..+...-+++-++.++ +.||-.+-..+| |-..+.-+.++.++|++..+- | . ..|++....+.
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E-------~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----E-------ASLGKSQFLQHHGH 245 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----H-------Hhhchhhhhhcccc
Confidence 3445555555566555 567665533333 333445567777777765421 0 0 00111111110
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 614 AYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD--NTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 614 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..+.+..-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-.++..|++.|-..+++.|+..++.+-.+-.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111112222333345556667778888888888888766664 34567777788888888888888777665544
Q ss_pred CcCCCceeEEEECCEEEEEEeCCcCCCC-------hhHHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHh-hhhH
Q 047408 692 LKKNPGCSWIEIKGKVNIFVAGGSSHPH-------AKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVAL-CGHS 763 (830)
Q Consensus 692 ~~~~~~~swi~~~~~~~~f~~~~~~~p~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l-~~hs 763 (830)
..|....+|...- ...-.++|+..|+ +......++-+.+.++..-++|+--.-.-.+--. -|.++ .+-|
T Consensus 326 lpkSAti~YTaAL--LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrGDS 402 (539)
T PF04184_consen 326 LPKSATICYTAAL--LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRGDS 402 (539)
T ss_pred CCchHHHHHHHHH--HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCCcH
Confidence 4444433331100 0000122332222 1223345666777777777777532111111100 12222 3457
Q ss_pred HHHHHHHH
Q 047408 764 EKLAMAFG 771 (830)
Q Consensus 764 e~la~a~~ 771 (830)
|-+|-||-
T Consensus 403 EAiaYAf~ 410 (539)
T PF04184_consen 403 EAIAYAFF 410 (539)
T ss_pred HHHHHHHH
Confidence 77777665
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.33 E-value=0.17 Score=33.00 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.+|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888875
No 245
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.21 E-value=1.6 Score=45.81 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=95.4
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHH----hCCC-CchhHHhHHHHHHHhcCCHHHHHHHhhhC-------CCCC
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILR----HGIS-ADRNVANAIVDMYVKCGVLVLARSLFDMI-------PAKD 523 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-------~~~d 523 (830)
.-...|..+-+.+.-+|+++.+...|..-+. .|-. .....+..|.+.|.-.|+++.|.+-+... ..+.
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 3456788888888889999999999886432 3322 13456677888899999999999988753 2343
Q ss_pred h--hhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 524 L--ISWTIMIAGYGMHGFGCDAIATFNDMRQA----G-IEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 524 ~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
+ .+.-++.+.|.-...+++|+..+.+-+.- + ..-....+.+|..++...|..++|+.+.+.-.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3 35667888888888999999998875431 1 12234478899999999999999988776543
No 246
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.03 E-value=18 Score=40.47 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=127.1
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
+..+|+.-++.-.+.|+.+...-+|++..-| =..-|--.+.-....|+.+-|-.++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5678888888889999999999999987644 2234555554444458888888777776654333333332222233
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAY---RFIEMM-PVAPDATIWGSLLC-----GCR 638 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 638 (830)
+...|+.+.|..+++...+++ |+ ++.-.--+....|.|+++.+. +++... +.+-+..+.+.+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 678899999999999998764 65 334444567788999999988 665554 33333333333322 245
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
..++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 67899999999999999999999999999888776663
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=2.7 Score=44.48 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=71.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+.-.|.+.+.+.+|++.-++. ..+| |.-..--=..+|...|+++.|+..++++++++|+|-.+..-|+.+--+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556666777888888888776664 4444 444444456788899999999999999999999999998888888877
Q ss_pred hcCHHHH-HHHHHHHHh
Q 047408 674 AEKWEEV-KKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A-~~~~~~m~~ 689 (830)
..+..+. .+++..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7776665 677777754
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.72 E-value=4.8 Score=36.69 Aligned_cols=87 Identities=9% Similarity=0.052 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIA 244 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~ 244 (830)
.-..+|..+.+.+.+.....+++.+...+. .+....+.++..+++.. .......+.. ..+......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~----~~~ll~~l~~--~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD----PQKEIERLDN--KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC----HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence 345566666666777777777777766652 45556666666666543 2233333331 1223333334444455
Q ss_pred CCChhHHHHHHHHH
Q 047408 245 NGVAEKGLEVFKEM 258 (830)
Q Consensus 245 ~g~~~~A~~l~~~m 258 (830)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555554443
No 249
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.61 E-value=0.73 Score=43.51 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 602 VDLLSRTGNLSEAYRFIEMM----PVAP---DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
.+-+.+.|.+++|..-|... |-.| ..+.|..-..+..+.+..+.|+....+++++.|....+...-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34466788888888877765 2222 1244555556677889999999999999999999888888889999999
Q ss_pred cCHHHHHHHHHHHHh
Q 047408 675 EKWEEVKKLREKISR 689 (830)
Q Consensus 675 g~~~~A~~~~~~m~~ 689 (830)
.++++|.+-++++.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999998876
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.34 E-value=4.2 Score=45.67 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh-----HHHHHHHH-HHc---cCCHHHHHHHHHHhHhhcCCCCCcch
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAG-IEPDEV-----SFISVLYA-CSH---SGLVDEGWRFFNMMRYECNIEPKLEH 597 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~-----t~~~ll~a-~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~ 597 (830)
..+++...-.|+-+.+++++.+-.+.+ +.-..- +|..++.. +.. ...++.+.++++.+.++| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 344455555566666666665544321 111100 12222222 222 446677777777776554 55444
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH-HHHHH
Q 047408 598 YAC-MVDLLSRTGNLSEAYRFIEMMPV-A-----PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY-VLLAN 669 (830)
Q Consensus 598 y~~-lv~~l~r~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-~~l~~ 669 (830)
|.. -..++...|++++|++.|++.-. + -....+--+...+....++++|...+.++.+.+.-+...| ...+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 433 24556667888888888876411 1 1123333455566778899999999999988777655554 56677
Q ss_pred HHhhhcCH-------HHHHHHHHHHHh
Q 047408 670 VYAEAEKW-------EEVKKLREKISR 689 (830)
Q Consensus 670 ~y~~~g~~-------~~A~~~~~~m~~ 689 (830)
.|...|+- ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 78888888 777777776654
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.32 E-value=0.77 Score=46.03 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-------PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLL 667 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l 667 (830)
|+.-+++| +.|++.+|.+.|... +..||+.-| |+.++...|+++.|...|..+.+-.|++ |..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44444333 455566666555443 234555555 4566666777777777777666655544 3456667
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+..+.|+-++|..+++...+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 7777777777777777666543
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.30 E-value=0.96 Score=41.68 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHh----HhhcCCCCCcc
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMM----RYECNIEPKLE 596 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m----~~~~~~~p~~~ 596 (830)
++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.++|+.+ .++.|+.|+..
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 444445555555555555555552 33 2334555555555555555555555443 22445555543
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=4.6 Score=41.06 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=79.0
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH------HHHHHHhc
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGS------LLCGCRIH 640 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~------ll~~~~~~ 640 (830)
.....|+..++...|...... .| +.+.-..|...|...|+.++|..++..+|.+-...-|.. ++.--...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 445677788888888776532 23 356667788888999999999999999876554444433 22222222
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.
T Consensus 220 ~~~~----~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQ----DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHH----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222 2344556799999999999999999999999988765554
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.13 E-value=5.6 Score=43.42 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=69.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMP-V-APDA--TIWGSLLCGCR 638 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~--~~~~~ll~~~~ 638 (830)
..+...+.+.|..+||.+.|..|.+++...-.......|+..|...+.+.|+..++.+-. + -|.. ..|++.|-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345566678899999999999988665332234455678889999999999999998874 1 2433 45665554444
Q ss_pred hcCC---------------HHHHHHHHHHHhccCCCCcch
Q 047408 639 IHHE---------------VKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 639 ~~g~---------------~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.-++ -..|.+++.++++.+|..+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4443 123567888999998886643
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.10 E-value=2 Score=44.38 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=107.9
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhh-------hCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChh-H
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFD-------MIPAK--DLISWTIMIAGYGMHGFGCDAIATFNDMRQ-AGIEPDEV-S 561 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~-------~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~Pd~~-t 561 (830)
..++..+.++.++.|.++++...-- +.... -..+|-.+..++.+.-++.+++.+-+.-.. .|..|... -
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 3455566677777776666543211 11111 123455555566555556666555443332 23444222 2
Q ss_pred HHHH--HHHHHccCCHHHHHHHHHHhHhhcCC--CC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH
Q 047408 562 FISV--LYACSHSGLVDEGWRFFNMMRYECNI--EP--KLEHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPDAT 628 (830)
Q Consensus 562 ~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~ 628 (830)
+..+ -.|....+.++++++.|+...+-..- .| ....|..|..+|++..+.++|.-+..+. .++.=..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3333 34444455678888888876421111 12 2457888888888888888776555443 3222122
Q ss_pred HHH-----HHHHHHHhcCCHHHHHHHHHHHhcc--CCCCcc----hHHHHHHHHhhhcCHHHHHHHHH
Q 047408 629 IWG-----SLLCGCRIHHEVKLAEKVAEHVFEL--EPDNTG----YYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 629 ~~~-----~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
-|. -+.-+++..|.+..|.+..+++.++ ...|-. ....++++|-..|+.|.|..-++
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 222 3345678888888888888777553 233333 34578888888888777765544
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.03 E-value=22 Score=38.12 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWN 438 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n 438 (830)
|-..+.+++.++.-.|+.++|.+..+.|...+...|-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 4445667888888889999999888888776666664
No 257
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.67 E-value=1.5 Score=40.47 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..+++.+.++.++.-+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 455677777777777777777777777777777777777777777777765543
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.62 E-value=5.5 Score=36.04 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhccCCCCc
Q 047408 643 VKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~ 661 (830)
...|...++++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777888888888764
No 259
>PRK09687 putative lyase; Provisional
Probab=90.57 E-value=23 Score=36.64 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=107.4
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCcchHHHHHH
Q 047408 301 EISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVF----DGAIRLFRGMVREGIEPDVYAITSILH 376 (830)
Q Consensus 301 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~ 376 (830)
|..+....+..+.+.|..+-...+..-...+|...-...+.++.+-|.. .+++.++..+... .||...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3333344444444444332222222222334444444445555555543 3566666655332 344444444444
Q ss_pred HhhccCcch--hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC
Q 047408 377 ACACDGLLE--IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 377 a~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~ 454 (830)
++...+.-. ............-..++..+.-..+.++++.|+.+ |...+-.+...
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~d---------------------- 170 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-AIPLLINLLKD---------------------- 170 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-HHHHHHHHhcC----------------------
Confidence 444432211 11122222222222345566666777777777643 33333333221
Q ss_pred CCCccccccchhhhcchh-hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHH
Q 047408 455 EPDGVTMACILPACASLA-ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAG 533 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~ 533 (830)
+|...-...+.++.+.+ .-+.+...+..+. -.++..+-..-+.++++.|+.+-.-.+.+.+..++ ..-..+.+
T Consensus 171 -~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~A 244 (280)
T PRK09687 171 -PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEA 244 (280)
T ss_pred -CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHH
Confidence 11112222222232221 0122233322222 34566667777777777777443333344444433 23356677
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACS 570 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 570 (830)
+...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 245 Lg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 245 AGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777774 577777777763 445555444444443
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.87 E-value=2.8 Score=42.13 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHH
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACM 601 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 601 (830)
|+.-+. +.+.|++.+|...|...++. -|+.. .+.=|..++...|++++|..+|..+.++|+-.|. ++.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444333 33456677777777777763 23322 2334566677777777777777777777666665 3666666
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 047408 602 VDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m 621 (830)
...+++.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666554
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.65 E-value=2.4 Score=47.53 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc-----chHHHHH-HHHH---hcCCHHHHHH
Q 047408 546 TFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL-----EHYACMV-DLLS---RTGNLSEAYR 616 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv-~~l~---r~g~~~eA~~ 616 (830)
+|+-|..- ++| .+..+++...-.|+-+.|++.+....+..++.-.. -.|..++ ..++ ....+++|.+
T Consensus 179 ~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 44444442 333 34566666677899999999988765443443321 1233333 2333 3668899999
Q ss_pred HHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 617 FIEMM-PVAPDATIWGSLLCG-CRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 617 ~~~~m-~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++.+ ..-|+...|.-.-+- ++..|++++|...++++++...+ ..-.+.-+++.|.-.++|++|.+.+..+.+
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 99998 456888888655543 78899999999999988753322 223466789999999999999999999876
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.50 E-value=15 Score=44.41 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=10.5
Q ss_pred HHHHHHHHhcC--ChHHHHHHHhcC
Q 047408 407 NALMDMYAKCG--SMADAESVFNQM 429 (830)
Q Consensus 407 ~~Li~~y~k~g--~~~~A~~~f~~m 429 (830)
-.+|..|.+.+ .+++|.....+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l 818 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKEL 818 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555544 444444444433
No 263
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.46 E-value=2 Score=38.96 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=45.4
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
..++.++++.+++.+--+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 377888888888888888899888888889999999999999998887776553
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.27 E-value=20 Score=36.60 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=98.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGN 610 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 610 (830)
......|+..+|..+|+..... .|+. ..-..+..++...|++++|..++..+-.+..- ........-+..+.++..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhc
Confidence 4556778888888888888874 3333 34556667788889999999888876432110 011112334667777777
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCcchHHHHHHHHhhhcCHH-HHHHHHHH
Q 047408 611 LSEAYRFIEMMPVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFEL--EPDNTGYYVLLANVYAEAEKWE-EVKKLREK 686 (830)
Q Consensus 611 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~-~A~~~~~~ 686 (830)
..+..++.++..-.| |...--.|...+...|+.+.|...+=.++.. .-++...--.|..++...|.-| -+.+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777777777765566 4555556667788888888887766555543 3345666667777777777433 34455555
Q ss_pred HH
Q 047408 687 IS 688 (830)
Q Consensus 687 m~ 688 (830)
|-
T Consensus 299 L~ 300 (304)
T COG3118 299 LY 300 (304)
T ss_pred HH
Confidence 53
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.92 E-value=25 Score=37.70 Aligned_cols=150 Identities=11% Similarity=-0.066 Sum_probs=77.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHccCCHHHHHHHHHHhHhh-cCCCCCcch
Q 047408 522 KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP---DEVSFISVLYACSHSGLVDEGWRFFNMMRYE-CNIEPKLEH 597 (830)
Q Consensus 522 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 597 (830)
....+|..++..+.++|+++.|...+.++...+..+ +...+..-....-..|.-++|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345578888888888888888888888887643222 2223333344556677778888877766541 111101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRF-IEMMPVAPDATIWGSLLCGCRI------HHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
...+...+.. ..+..... ......+.-..++..+..-+.. +++.+.+...++++.++.|+....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001222222222333 3788899999999999999887777777666
Q ss_pred Hhh
Q 047408 671 YAE 673 (830)
Q Consensus 671 y~~ 673 (830)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 653
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.83 E-value=9.1 Score=35.40 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=60.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMP-VAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g 641 (830)
.+++.-.+.++.+++..++..+. -+.|. .++-.+-+..+.+.|+|.+|+.+++++. -.|....-.+|+..|....
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 33444556678888888888776 56675 3444455666788999999999999883 2344445567777775554
Q ss_pred CHHHHHHHHHHHhccCCC
Q 047408 642 EVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~ 659 (830)
.-..=...++.+++..|+
T Consensus 92 ~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGAD 109 (160)
T ss_pred CChHHHHHHHHHHhcCCC
Confidence 444444556677776664
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.61 E-value=2.3 Score=37.31 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=47.6
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CC-CH---HHHHHHHHHHHhc
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PV-AP-DA---TIWGSLLCGCRIH 640 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p-~~---~~~~~ll~~~~~~ 640 (830)
+.+..|+++.|++.|.... .+-| ....||.=..+|.-.|+.++|++=+++. .+ .| .. ..|---...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3445566666666665544 3333 3455666666666666666666555543 10 01 11 1222223346777
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047408 641 HEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~ 659 (830)
|+.+.|+.-|+.+-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888887777766655443
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.39 E-value=70 Score=39.09 Aligned_cols=198 Identities=15% Similarity=0.195 Sum_probs=109.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhH
Q 047408 171 HEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEK 250 (830)
Q Consensus 171 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~ 250 (830)
-+-..+.++.+-+-+++++.+....--.+..+..+. +.++|+.-+.++. ...|+-.++---++|.+.+
T Consensus 859 VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~---------ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~ 926 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLK---------RYEDALSHLSECG---ETYFPECKNYIKKHGLYDE 926 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHH---------HHHHHHHHHHHcC---ccccHHHHHHHHhcccchh
Confidence 344445666666666666553211011111111111 4566666555554 3345555666667778888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC
Q 047408 251 GLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE 330 (830)
Q Consensus 251 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 330 (830)
|+.++ +|+...+..+..+|+. ++.+.. -++--.-+|.++|+.++|.+
T Consensus 927 aL~ly--------~~~~e~~k~i~~~ya~------------hL~~~~------~~~~Aal~Ye~~GklekAl~------- 973 (1265)
T KOG1920|consen 927 ALALY--------KPDSEKQKVIYEAYAD------------HLREEL------MSDEAALMYERCGKLEKALK------- 973 (1265)
T ss_pred hhhee--------ccCHHHHHHHHHHHHH------------HHHHhc------cccHHHHHHHHhccHHHHHH-------
Confidence 87775 5777777666666542 111111 11233447888888888865
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcch--HHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHH
Q 047408 331 RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYA--ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNA 408 (830)
Q Consensus 331 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 408 (830)
+|..+|++.+|+.+-.+|-.. -|... --.|..-+...+..-+|-++..+.... ..-
T Consensus 974 -----------a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~ 1031 (1265)
T KOG1920|consen 974 -----------AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEE 1031 (1265)
T ss_pred -----------HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHH
Confidence 455577888888887766321 12211 134445555666665555555443221 223
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCch
Q 047408 409 LMDMYAKCGSMADAESVFNQMPVKDIV 435 (830)
Q Consensus 409 Li~~y~k~g~~~~A~~~f~~m~~~~~~ 435 (830)
-+..|++...+++|.++-..-...|.+
T Consensus 1032 av~ll~ka~~~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVASKAKRDDII 1058 (1265)
T ss_pred HHHHHhhHhHHHHHHHHHHhcccchHH
Confidence 456678888899999887766555543
No 269
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.27 E-value=34 Score=35.40 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047408 203 CVLKCLAVVGNSRRVKDAHKLFDELSD--RD-VVSWNCMISGYIANGVAEKGLEVFKEMLNL 261 (830)
Q Consensus 203 ~ll~~~~~~g~~~~~~~A~~lf~~m~~--~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 261 (830)
.+..++...++.+..+.|..+.+.+.. +| ...+-.-+..+.+.++.+++.+.+.+|...
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344444444444445555555544421 22 333333344444466666666666666654
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.13 E-value=0.66 Score=30.86 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.5
Q ss_pred hHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 663 YYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 663 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+|..|+++|.+.|+|++|.++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999988743
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.12 E-value=0.67 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666667777788888888888888877774
No 272
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.10 E-value=9.8 Score=39.68 Aligned_cols=129 Identities=14% Similarity=0.195 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh--c----CCHHHHHHHhhhCCC-------CChhhHHHHHHHHHhcCC
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVK--C----GVLVLARSLFDMIPA-------KDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k--~----g~~~~A~~~f~~m~~-------~d~~~~~~li~~~~~~g~ 539 (830)
.++....+++.+.+.|+..+..++-+-.-+... . -.+..|..+|+.|.+ ++-.++.+|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 466777888888888888877666553333322 1 235678888888873 344566666554 2222
Q ss_pred ----hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHcc-CC--HHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 540 ----GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHS-GL--VDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 540 ----~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~-g~--~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
.+++...|+.+...|+..+.. .+.+-+-++... .. +..+.++++.+.+. |+++...||..++-+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 467788889999888877655 444444443322 22 45788888888755 999999998876543
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.67 E-value=7.4 Score=40.05 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=106.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH----HHHHhcCCH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV----DLLSRTGNL 611 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv----~~l~r~g~~ 611 (830)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|..+.-+..++.+.. .-.|+...|.-+= -.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357788888888888874 555666777777889999998888888887763 3356665555443 345588999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
++|++.-++. .+.| |.=.-.++.......|+..+|.+..++--..=.+ -+..|-..+-.|...+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888876 5555 3333345555567788888888877654322111 12345555666777788999999876
Q ss_pred HHHhCCCcCCCc
Q 047408 686 KISRRGLKKNPG 697 (830)
Q Consensus 686 ~m~~~g~~~~~~ 697 (830)
.=.-+.+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 544344555554
No 274
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.45 E-value=46 Score=35.97 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=60.8
Q ss_pred CCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHH
Q 047408 299 SKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSV---VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSIL 375 (830)
Q Consensus 299 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 375 (830)
+.|+..|-.||..|...|..++-++++++|..|-. ..|..-|++=....++.....+|.+-+...+..| .|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 56778888999999999999999999999988754 3788888888888888888888888877655433 344444
Q ss_pred HHhhc
Q 047408 376 HACAC 380 (830)
Q Consensus 376 ~a~~~ 380 (830)
.--.+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 43333
No 275
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.43 E-value=16 Score=41.79 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=98.3
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHG 538 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 538 (830)
+.|.-.++---+-|+-++|..+.--+++..-+. -=+|||-||++-+ .|- +-+.|...+
T Consensus 244 f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v-------apDm~Cl~GRIYK------DmF---------~~S~ytDa~ 301 (1226)
T KOG4279|consen 244 FHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV-------APDMYCLCGRIYK------DMF---------IASNYTDAE 301 (1226)
T ss_pred EEeeehhcccCCCccHHHHHHHHHHHHHhcCCC-------CCceeeeechhhh------hhh---------hccCCcchh
Confidence 456666666677788888888766665532111 1257888887533 221 123455666
Q ss_pred ChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVS---FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
..+.|++.|++..+ +.|+..+ +..||.|-.+. ++...+ |+ . .-..|-.+++|.|.++.-.
T Consensus 302 s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~E----lq-~--------IgmkLn~LlgrKG~leklq 364 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSLE----LQ-Q--------IGMKLNSLLGRKGALEKLQ 364 (1226)
T ss_pred hHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchHH----HH-H--------HHHHHHHHhhccchHHHHH
Confidence 77889999999887 7888764 44455432221 111111 11 0 1123456789999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 616 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
++++- .+.+.+-...+|+..|.++++.++++.|..-
T Consensus 365 ~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 365 EYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 88753 2345666777899999999999999998753
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.31 E-value=2 Score=44.08 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=51.8
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
+-|.++|.++||+..|.... .+.| +...|..-..+|.|..++..|+.=-+.. .+.. -.-.|.--..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 44666777777777776543 4445 5566666666677777766665433332 1110 012333333344445667
Q ss_pred HHHHHHHHHHhccCCCC
Q 047408 644 KLAEKVAEHVFELEPDN 660 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~ 660 (830)
++|..-++.+++++|++
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 77777777777777774
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.29 E-value=33 Score=34.04 Aligned_cols=194 Identities=14% Similarity=0.122 Sum_probs=105.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC--hhhHHHHHHHHHhcCChHHH
Q 047408 466 PACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD--LISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--~~~~~~li~~~~~~g~~~~A 543 (830)
.++-...++++++..+..+.+. .+.+...|.+ ...++.|--+.++|.+-+ +..|+--+.+|.++|.++-|
T Consensus 39 vafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4455566777777766555532 2223222221 122334444444443221 23456677888888888877
Q ss_pred HHHHHHHHH--cCCCCChhH--HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 544 IATFNDMRQ--AGIEPDEVS--FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 544 ~~l~~~m~~--~g~~Pd~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
-..+++.-+ ++++||... |.--+......++...| .+.|+.....|.|..+++||-..|.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 766665533 346666531 22222222222222222 3445666677888888888877776
Q ss_pred hCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 620 MMP-------VAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFEL----EPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 620 ~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l----~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
+-. .-|+. -.+-+.+-.+....|+..|++.++.-.++ .|++......|...| ..|+.+++.++.
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 642 11222 22334444455566888898888875543 456655555555554 467888877763
No 278
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.27 E-value=5.6 Score=44.08 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhh
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIG 387 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 387 (830)
-.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+... |..++--+...|+.+.-
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455678899999988877665 555899999999999999999998887543 45566666677777777
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 429 (830)
.++-......| -+|.-...+.-.|++++..+++.+-
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77766666655 1444555566667777777777654
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.21 E-value=0.21 Score=45.93 Aligned_cols=127 Identities=9% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHH
Q 047408 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAI 353 (830)
Q Consensus 274 l~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 353 (830)
++.+.+.+.......+...+++.+...+..+.|.|+..|++.++.+...++++.... .-...++..+.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444444555555555666666655566777889999999999888888888874333 44566778888888888888
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCC
Q 047408 354 RLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGS 418 (830)
Q Consensus 354 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 418 (830)
-++.++....- .+..+...++++.|.+.... ..+..+|..+++.+...+.
T Consensus 91 ~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 91 YLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 88877643211 11113445566666644333 2456778888887766554
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.87 E-value=1.7 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
+|..+...|...|++++|.++|++.++ ..||...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHH
Confidence 566777788888888888888888887 4676653
No 281
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=19 Score=41.91 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=100.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHH----HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCC
Q 047408 499 IVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIA----GYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGL 574 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 574 (830)
-+++..+...++.|..+-+.-.. |...-..+.. -+.+.|++++|...|-+-... +.|..+ +.-+..+..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~V-----i~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSEV-----IKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHHH-----HHHhcCHHH
Confidence 45566666666666666554322 2222222222 234568888888877776543 445443 233344445
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
..+-..|++.+.+. |+ .+..|-+.|+.+|.+.++.+.-.++++.-+..--..-....+..|+..+-.++|..++.+.-
T Consensus 413 IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 413 IKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 55555666666533 44 35667778888888888888888888776410001123456677788888888887777653
Q ss_pred ccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 655 ELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 655 ~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
. .+ ..|--++-..|++++|.+.++.|
T Consensus 491 ~-he------~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-HE------WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred c-CH------HHHHHHHHHhcCHHHHHHHHhcC
Confidence 2 11 12333566677777777776544
No 282
>PRK15331 chaperone protein SicA; Provisional
Probab=86.61 E-value=3.2 Score=38.47 Aligned_cols=83 Identities=7% Similarity=-0.016 Sum_probs=35.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEVSF-ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 613 (830)
-+.|++++|..+|+-+.. ..|...-| ..|..+|-..+.+++|...|.....--.-.|.+ +--+...|...|+.++
T Consensus 48 y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHHhCCHHH
Confidence 344555555555555444 23333322 222233333455555555554432110111222 2223445555556666
Q ss_pred HHHHHHhC
Q 047408 614 AYRFIEMM 621 (830)
Q Consensus 614 A~~~~~~m 621 (830)
|.+.|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 65555554
No 283
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.58 E-value=25 Score=34.15 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
..||-+.--+...|+++.|.+.|+...+ +.|... ++..=.-++.-.|+++-|.+-|...- .-.|+...-+.-+-
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY---Q~D~~DPfR~LWLY 174 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY---QDDPNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHH---hcCCCChHHHHHHH
Confidence 4555555556666666666666666665 344321 22222233445566666655444332 22232211111122
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHhhhcC
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-------TGYYVLLANVYAEAEK 676 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~ 676 (830)
+-.+.=+..+|..-+.+--...|..-|+..+-.+.--.--+ +.+++++.+-..++ ..+|.-|+.-|-..|.
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22233345555543322222345566766655543211111 12233333322222 3468889999999999
Q ss_pred HHHHHHHHHHHHh
Q 047408 677 WEEVKKLREKISR 689 (830)
Q Consensus 677 ~~~A~~~~~~m~~ 689 (830)
.++|..+++....
T Consensus 253 ~~~A~~LfKLaia 265 (297)
T COG4785 253 LDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997764
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.41 E-value=7.6 Score=36.55 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC----HHHHHHHHHHHH
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK----WEEVKKLREKIS 688 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~----~~~A~~~~~~m~ 688 (830)
+++|..-+++++.++|+...++.++++.|...|. -.+|.+.+++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4566677788889999999999999999999875 334555555544
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.92 E-value=46 Score=34.44 Aligned_cols=18 Identities=11% Similarity=-0.202 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~ 653 (830)
.+...++++.|...++-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 456667787777777644
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.47 E-value=4.5 Score=41.33 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=60.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhHHHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ-----AGIEPDEVSFIS 564 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~Pd~~t~~~ 564 (830)
..++..++..|..+|+.+.+.+.+++.. .-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4567788999999999999999998875 33677999999999999999999999999876 477777665444
Q ss_pred HHH
Q 047408 565 VLY 567 (830)
Q Consensus 565 ll~ 567 (830)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 287
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.02 E-value=10 Score=36.71 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++.+.+.+.+++|+..++.-++-+|.+...-..|..+|+-+|+|++|..-.+..-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444555666677777776667777777766677777777777777766555443
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.71 E-value=1.3 Score=29.44 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888875543
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.98 E-value=2 Score=27.83 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
.+|..+...|...|++++|++.|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3577777888888888888888888877 4554
No 290
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=45 Score=35.44 Aligned_cols=109 Identities=19% Similarity=0.336 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhcc---CCCC----
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL------------LCGCRIHHEVKLAEKVAEHVFEL---EPDN---- 660 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~l---~p~~---- 660 (830)
.|+..+...|++++|.+++.+.|++ ||+++ +..|...+|+-.|..+.+++... +|+-
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4667788999999999999998743 33322 45688889999999888877532 2321
Q ss_pred cchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEe
Q 047408 661 TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVA 712 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~ 712 (830)
-.+|.++..++...+.+=++.+.++..-+-|-.+...--|+++-..+-.|..
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 2469999999999999999999999998888777655578887665555553
No 291
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.52 E-value=13 Score=33.21 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHhc-cCCCCcc-hHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEE
Q 047408 629 IWGSLLCGCRIH---HEVKLAEKVAEHVFE-LEPDNTG-YYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEI 703 (830)
Q Consensus 629 ~~~~ll~~~~~~---g~~~~a~~~~~~~~~-l~p~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~ 703 (830)
+--.+.++.... .+++++..+++.+++ -.|+... ....|+-.+++.|+++.+.++.....+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~-------------- 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE-------------- 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--------------
Confidence 333444444333 356777788888876 4454333 234456667888888888888776653
Q ss_pred CCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCcc
Q 047408 704 KGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740 (830)
Q Consensus 704 ~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~ 740 (830)
..|++.+....=+.+.++|++.|++
T Consensus 100 ------------~e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 100 ------------TEPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ------------hCCCcHHHHHHHHHHHHHHhhccee
Confidence 2344555555555667788887764
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.39 E-value=15 Score=41.00 Aligned_cols=147 Identities=18% Similarity=0.068 Sum_probs=103.5
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHH
Q 047408 505 KCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
-.|+++.|..++..+++ ..-+.++.-+...|..++|+++ .||..- |-.. .+.|+++.|.++-.
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 35788888887777763 2345566667778888888774 444432 3222 36789999988776
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 584 MMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 584 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+.. +..-|..|.++...+|++..|.+.|.... -|.+|+-.+...|+.+.-..+.+..-+....|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 543 34678999999999999999999998763 37788888888888886666666555544443
Q ss_pred HHHHHHHHhhhcCHHHHHHHHH
Q 047408 664 YVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 664 ~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.--..|...|+.++..+++.
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHH
Confidence 23345777899999888754
No 293
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.85 E-value=58 Score=38.05 Aligned_cols=159 Identities=14% Similarity=0.197 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHH-HHccCCHHHHHHHHHHhHhh-----------
Q 047408 525 ISWTIMIAGYGM---HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYA-CSHSGLVDEGWRFFNMMRYE----------- 588 (830)
Q Consensus 525 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a-~~~~g~~~~a~~~~~~m~~~----------- 588 (830)
.-+..||..|.+ ..++.+|++.|--+.... .|+.. .+...+.- ....+.++ .++..+..+
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~-~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~ 400 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFK-DPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERR 400 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS--SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHT
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeecc
Confidence 456778888875 467888888887776532 24433 22222211 11111111 111111000
Q ss_pred ---cCCCCCcchHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC------------HHHHH
Q 047408 589 ---CNIEPKLEHYA----CMVDLLSRTGNLSEAYRFIEMMPVAPDA--TIWGSLLCGCRIHHE------------VKLAE 647 (830)
Q Consensus 589 ---~~~~p~~~~y~----~lv~~l~r~g~~~eA~~~~~~m~~~p~~--~~~~~ll~~~~~~g~------------~~~a~ 647 (830)
.++..+..-.. ....-+...|++++|..+++-.. +.|. .+.+.+|+-...... ...|.
T Consensus 401 ~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~ 479 (613)
T PF04097_consen 401 LSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAK 479 (613)
T ss_dssp GGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHH
Confidence 01222222222 23345667899999999998875 3332 355666655433322 33444
Q ss_pred HHHHHHhc-------cCCCCcchHHHHHHH-----HhhhcCHHHHHHHHHHHH
Q 047408 648 KVAEHVFE-------LEPDNTGYYVLLANV-----YAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 648 ~~~~~~~~-------l~p~~~~~~~~l~~~-----y~~~g~~~~A~~~~~~m~ 688 (830)
.+.+..-. .++.+..++..|.++ +...|+|++|.+..+.+.
T Consensus 480 ~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 480 EILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 44433221 223333344444443 678999999998765543
No 294
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.65 E-value=35 Score=30.41 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
+..+..+...|+-++-.++++++.+ +-+|+......+.+||.+.|...++.+++....
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3344555556666665566665543 235555556666666666666666666666554
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.15 E-value=4.2 Score=29.84 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
|.-|+.+.|+++.|.+..+.+++++|+|..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3446789999999999999999999998644
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.00 E-value=7.6 Score=28.49 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCc
Q 047408 664 YVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGY 739 (830)
Q Consensus 664 ~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~ 739 (830)
...|+-.+.+.|++++|.+..+.+.+ .+|++.+.....+.+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45677788999999999999888764 467788888888888888988874
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.26 E-value=6 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+...+...|+.+.+...++++++.+|-+-..|..|...|...|+...|.+.++.++
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555554443
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=80.69 E-value=36 Score=31.95 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=64.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCCchHHHHHHHHhhcC-CChHHHHHHHhhcC
Q 047408 252 LEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKAC-FSKEISFNNTLLDMYSKC-GDLDGAIRVFEKMG 329 (830)
Q Consensus 252 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~Li~~y~k~-g~~~~A~~~f~~m~ 329 (830)
++.++.+.+.|+.|+...+..+++.+.+.|....-.++. ..+ ++++..+...|++.-.+. .-..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344555556667777777777777776666554333222 222 233333333333332211 01222333333332
Q ss_pred CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHH
Q 047408 330 ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIK 395 (830)
Q Consensus 330 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 395 (830)
..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2455667777888888888887766422 122233445555555544444344444333
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.46 E-value=1.2 Score=40.87 Aligned_cols=87 Identities=9% Similarity=0.134 Sum_probs=54.6
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCC
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 539 (830)
....++..+.+.+..+...++++.+.+.+...+..+.+.|+.+|++.+..++..++++.... .-...++..+-++|.
T Consensus 9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 9 EISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGL 85 (143)
T ss_dssp CSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTS
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcch
Confidence 34567777777788888888888888777667788888888888888776776666653222 222334444444455
Q ss_pred hHHHHHHHHH
Q 047408 540 GCDAIATFND 549 (830)
Q Consensus 540 ~~~A~~l~~~ 549 (830)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 300
>PRK12798 chemotaxis protein; Reviewed
Probab=80.19 E-value=93 Score=33.70 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=118.2
Q ss_pred cCCHHHHHHHhhhCCC----CChhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHccCCHH
Q 047408 506 CGVLVLARSLFDMIPA----KDLISWTIMIAGYG-MHGFGCDAIATFNDMRQAGIEPDEV----SFISVLYACSHSGLVD 576 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~ 576 (830)
.|+.++|.+.+..+.. +.+..+-+|+.+-. ...++.+|+++|++..- .-|-.. ....-+..+...|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6999999999998863 34567777776654 55679999999999886 456543 3444455678899999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHH-HHHHHH---HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 577 EGWRFFNMMRYECNIEPKLEHYA-CMVDLL---SRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 577 ~a~~~~~~m~~~~~~~p~~~~y~-~lv~~l---~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
++..+-..-..+|.-.|=...|. -.+..+ ...-..+.-.+++..|+-.--..+|..+-..-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887766666666666433322 223333 33334455556666664222357888888888999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHhhh-----cCHHHHHHHHH
Q 047408 653 VFELEPDNTGYYVLLANVYAEA-----EKWEEVKKLRE 685 (830)
Q Consensus 653 ~~~l~p~~~~~~~~l~~~y~~~-----g~~~~A~~~~~ 685 (830)
+..+.++ ...-...+++|... .+.++|.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 9988744 33334445555543 33555555443
No 301
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.13 E-value=74 Score=32.53 Aligned_cols=57 Identities=12% Similarity=-0.025 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
-....|...|++.+|..+.++++.++|-+...+-.|.++|+..|+--+|.+-++.|.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334568999999999999999999999999999999999999999888877777665
No 302
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.10 E-value=22 Score=29.86 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-++-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 345666666666554422 333333335567889999999999999999999999887654 56777888888888877
Q ss_pred cCCCCChhHHHH
Q 047408 553 AGIEPDEVSFIS 564 (830)
Q Consensus 553 ~g~~Pd~~t~~~ 564 (830)
+| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 566656643
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.01 E-value=39 Score=36.20 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
...+|..+...|+++|+++.|..++.++.+..+. .+.....-+.+....|+-++|....+...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999886532 456677779999999999999998777665333
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.57 E-value=9.5 Score=38.97 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=74.1
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC-CC-----eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE-RS-----VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVY 369 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 369 (830)
.|.+....+...++..-....+++++...+-.+.. |+ ..+-.+.++-+ -.-++++++.++..=++.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 45555555667778777778888888888777654 21 11122233333 3346789999999989999999999
Q ss_pred hHHHHHHHhhccCcchhhhhHHHHHHhhc
Q 047408 370 AITSILHACACDGLLEIGKDVHDYIKEND 398 (830)
Q Consensus 370 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 398 (830)
|++.++..+.+.++...|.++.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888877776654
No 305
>PRK10941 hypothetical protein; Provisional
Probab=78.93 E-value=9.8 Score=38.95 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
..+.|-.++...++++.|.++.+.++.+.|+++.-+---+-+|++.|.+..|..-++.-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 356667788999999999999999999999999888888999999999999998776554
No 306
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.82 E-value=2.9 Score=25.33 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=19.9
Q ss_pred chHHHHHHHHhhhcCHHHHHHHHH
Q 047408 662 GYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 662 ~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.....|+.+|...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999998764
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.97 E-value=67 Score=30.83 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCCCChhHHHH--HHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH-----HHHHhcCCHHHH
Q 047408 542 DAIATFNDMRQAGIEPDEVSFIS--VLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV-----DLLSRTGNLSEA 614 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv-----~~l~r~g~~~eA 614 (830)
+.....+++....-+-..-++.+ +..+....|++++|...++.... .|..+.+..++ ..+...|..|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555566655321222222322 23456778888888888776542 13344444443 456778899999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 615 YRFIEMMPVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 615 ~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
+..++... .++ +..-..-...+...|+-++|+..|+++++.++++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 98887653 221 2222233456788889999999999988887553
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.86 E-value=46 Score=31.22 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=66.9
Q ss_pred hcCCChHHHHHHHhhcCCCCeehHHHH-----HHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH---HhhccCcc
Q 047408 313 SKCGDLDGAIRVFEKMGERSVVSWTSM-----IAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH---ACACDGLL 384 (830)
Q Consensus 313 ~k~g~~~~A~~~f~~m~~~d~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~ 384 (830)
+..+..++|+.-|..+...+--+|-.| .....+.|+..+|+..|.+.-...-.|-..-=..-|+ .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344666677777766665444444333 2345566777777777777655443443331111122 12344555
Q ss_pred hhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 047408 385 EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK 432 (830)
Q Consensus 385 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 432 (830)
++...-.+-+-..|-+.-...-.+|.-.-.|.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 554444444333333333445566766777889999999999887654
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.56 E-value=4.2 Score=26.11 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
.|..+...|.+.|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777888888888888888776 4554
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.61 E-value=11 Score=36.29 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHH
Q 047408 605 LSRTGNLSEAYRFIEMMPVAP--DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~ 678 (830)
..|-|+ ++|.+.|-.+.-.| +......-|..+....|.+.++.++-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 345554 45666666663233 3344455566677788999999999999987543 4788999999999999999
Q ss_pred HHH
Q 047408 679 EVK 681 (830)
Q Consensus 679 ~A~ 681 (830)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 311
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=76.56 E-value=88 Score=31.46 Aligned_cols=174 Identities=16% Similarity=0.060 Sum_probs=104.3
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHH
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIPAKDL------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISV 565 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~l 565 (830)
..|+- +..-.+.|++++|.+-|+.+..+.+ -+--.++-++-+.+++++|+..+++.... -|++. -|...
T Consensus 36 ~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~Y 112 (254)
T COG4105 36 ELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYY 112 (254)
T ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHH
Confidence 34443 3345678999999999999975422 23334556777999999999999998873 33332 34444
Q ss_pred HHHHHc---c----CCHH---HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH-H-HHH
Q 047408 566 LYACSH---S----GLVD---EGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATI-W-GSL 633 (830)
Q Consensus 566 l~a~~~---~----g~~~---~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~-~-~~l 633 (830)
|.+.++ . .+.. +|..-|+....+| |+.. --.+|..-+.... |... . .+.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHH
Confidence 444442 1 1222 2333333333332 2221 1112222111110 0000 0 133
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTG---YYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..-|.++|...-|..=++.+++--|+.+. .+..|.+.|...|.-++|.+..+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 45578889999898889999887766544 466778889999999999998877664
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.28 E-value=3.3 Score=28.08 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=22.1
Q ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 662 GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 662 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577889999999999999998877654
No 313
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.17 E-value=1e+02 Score=32.10 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=102.0
Q ss_pred hcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH--HHHHH--HHHHccCCHHH
Q 047408 505 KCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS--FISVL--YACSHSGLVDE 577 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t--~~~ll--~a~~~~g~~~~ 577 (830)
-.|+..+|-..++++. ..|..+|+--=.+|..+|+.+.-...+++.... -.||... |+.=+ .++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3567777777777765 458889998889999999999999999988764 3556543 32222 34457899999
Q ss_pred HHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHH
Q 047408 578 GWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMPVAPD-------ATIWGSLLCGCRIHHEVKLAEKV 649 (830)
Q Consensus 578 a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~ 649 (830)
|.+.-++.. .+.|. .-.--++...+.-.|+..|+.+|+.+-...-+ ..-|..-+ .+...+.++.|+.+
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 988777654 45553 33344667778889999999999987632211 11233222 12334689999999
Q ss_pred HHHHh--ccCCCCc
Q 047408 650 AEHVF--ELEPDNT 661 (830)
Q Consensus 650 ~~~~~--~l~p~~~ 661 (830)
+++-+ +++.+|+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87543 5666665
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.95 E-value=18 Score=37.10 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=72.9
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-C--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA-K--------DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP 557 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 557 (830)
.|.+....+...+++.-....+++++...+-++.. + ...+|-.++. .-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 45555666667777777778889999888776652 2 2233433333 346779999999999999999
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 587 (830)
|..|+..++..+.+.+.+.+|.++.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999887766543
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.70 E-value=13 Score=35.38 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhhcCCCCe------ehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 304 FNNTLLDMYSKCGDLDGAIRVFEKMGERSV------VSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 304 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
.+..+.+.|.+.|+.+.|.+.|.++.+..+ ..+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345666777777777777777777655322 234455555556666666665555543
No 316
>PRK09687 putative lyase; Provisional
Probab=75.63 E-value=1e+02 Score=31.85 Aligned_cols=203 Identities=7% Similarity=-0.071 Sum_probs=93.8
Q ss_pred CcchHHHHHHHHHhCCCh----hHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCC--HHHHHHHHhh-CCCCCcch
Q 047408 162 KVFIWNLLMHEYSKTGNF----KESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRR--VKDAHKLFDE-LSDRDVVS 234 (830)
Q Consensus 162 ~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--~~~A~~lf~~-m~~~~~~~ 234 (830)
|...-...+.++.+-|+. .+++..+..+... .||...-...+.+++..+.... ...+...+.. +..+|..+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~V 144 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNV 144 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHH
Confidence 333334444455555442 3455555554322 3444444455555544432110 1122222222 22344445
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCCCchHHHHHHHHhh
Q 047408 235 WNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA-LMFGRAVHAFALKACFSKEISFNNTLLDMYS 313 (830)
Q Consensus 235 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~ 313 (830)
--..+.++.+.|+ .+|+..+..+... +|...-...+.++++.+. -..+...+..++ .+++..+...-+.+++
T Consensus 145 R~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 145 RFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHH
Confidence 5555666665554 4566666666542 344444444445444321 112222222222 3456666666667777
Q ss_pred cCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 047408 314 KCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHAC 378 (830)
Q Consensus 314 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 378 (830)
+.|+..-.-.+.+.+..++ ..-..+.++.+.|.. +|+..+..+... .||...-...+.+|
T Consensus 218 ~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 218 LRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 7766433333333333333 233455666666664 566666666553 23544444444443
No 317
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.56 E-value=7.3 Score=45.18 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=79.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
+.++++.+.+.+.-.--| .++|.-+.+.|-.+-|+.+.+.=..++ ++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 456677666655433222 234555567777777776655433332 23457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 617 FIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 617 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
.-++.. |..+|..|...-..+||.+.|+..+++.. .+..|+-+|.-.|+.++-.++
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHHHHH
Confidence 988763 67899999999999999999999999864 355667778888887765444
No 318
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.50 E-value=6.8 Score=42.53 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=67.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLL-CGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
+-+.+.+.++.|..++.+. .++|+..+|-+.= .++.+.+++..|..-+.++++++|.....|+.-+..+.+.|++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445566777777777665 6778765443333 6678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 047408 681 KKLREKIS 688 (830)
Q Consensus 681 ~~~~~~m~ 688 (830)
...++.-.
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 98877544
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=75.30 E-value=73 Score=29.92 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=59.7
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCe
Q 047408 255 FKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKA-CFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSV 333 (830)
Q Consensus 255 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~ 333 (830)
+..+.+.++-||.......+-.... ....+.++--.|.+. +. .+..+++.+...|++-+|.++.+....-+.
T Consensus 48 L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 48 LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 3444555566665555544433322 222333333333222 21 125567788889999999999988766666
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 047408 334 VSWTSMIAGYAREGVFDGAIRLFRGMVRE 362 (830)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 362 (830)
+.-..++.+-.+.++...=..+|+-....
T Consensus 121 ~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 121 VPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66677888888877776655555555443
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=74.70 E-value=48 Score=31.63 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=38.1
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIPAKD------LISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..+..+.+.|++.|+.+.|.+.|.++.... +..+-.+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777777777777777765442 23455566666666777766666665554
No 321
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=74.70 E-value=99 Score=32.32 Aligned_cols=56 Identities=9% Similarity=0.246 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc--cC----CHHHHHHHHHHhHhhcCCCCCc
Q 047408 540 GCDAIATFNDMRQAGIEPDEVSFISVLYACSH--SG----LVDEGWRFFNMMRYECNIEPKL 595 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p~~ 595 (830)
.++.+.+++.|.+.|++-+..+|.+.+..... .. ....+..+|+.|+++|..--..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 45667889999999999998887764433332 22 3567899999999887764443
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.99 E-value=6.4 Score=24.00 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
+|..+...+...|+++.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555556666666666666666666554
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.54 E-value=52 Score=30.09 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=41.7
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMPVAP-DATIWGSLLCGC 637 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~ 637 (830)
...++.+++..+++.|. -+.|+ .+.-.+-+-.+.+.|+|+||..++++..-.+ ....-.+|+.-|
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34677788888887776 55665 3344444556778899999999998885433 333334444444
No 324
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.85 E-value=27 Score=29.49 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 542 DAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+..+.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455556666677899999999999999999999999999999876644 33447877764
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.77 E-value=22 Score=29.63 Aligned_cols=62 Identities=16% Similarity=0.308 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+..+.+.|. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3445556666667778999999999999999999999999999988755433 4446666653
No 326
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.37 E-value=2.3 Score=43.91 Aligned_cols=90 Identities=13% Similarity=0.179 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 608 TGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 608 ~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.|.+++|++.+... +..|. ...+..-.+++...+....|++-+..+++++|+.+.-|-.-+......|.|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45677777776655 44443 34454455566677777788888888888888888888888888888888888888888
Q ss_pred HHHhCCCcCCCc
Q 047408 686 KISRRGLKKNPG 697 (830)
Q Consensus 686 ~m~~~g~~~~~~ 697 (830)
..-+.++....+
T Consensus 207 ~a~kld~dE~~~ 218 (377)
T KOG1308|consen 207 LACKLDYDEANS 218 (377)
T ss_pred HHHhccccHHHH
Confidence 887777766554
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.98 E-value=7.2 Score=26.35 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777777654
No 328
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=71.34 E-value=6.7 Score=25.62 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=14.2
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLAR 513 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~ 513 (830)
|.+..+++.|...|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345556666666666666666654
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.11 E-value=1.1e+02 Score=30.24 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 596 EHYACMVDLLSRT-GNLSEAYRFIEMMP-----VAPDATIWGSLLCG---CRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 596 ~~y~~lv~~l~r~-g~~~eA~~~~~~m~-----~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.++-.+.+.|... .+++.|+..++... -+.+...=..+|.. -...+++.+|..+++++....-+|+
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3444555555544 56666666666551 12222222333332 2455788889999888876655554
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.82 E-value=13 Score=38.43 Aligned_cols=86 Identities=17% Similarity=0.066 Sum_probs=60.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGN 610 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 610 (830)
+-|.++|.+++|++.|..-.. +.| |.+++..-..||.+...+..|..-...... .-...+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHHH
Confidence 579999999999999998877 678 999999999999998888777665555431 11234566766654
Q ss_pred -------HHHHHHHHHhC-CCCCCHH
Q 047408 611 -------LSEAYRFIEMM-PVAPDAT 628 (830)
Q Consensus 611 -------~~eA~~~~~~m-~~~p~~~ 628 (830)
++||.+=.+.. .++|+..
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 44444444332 5677743
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.81 E-value=2.2e+02 Score=33.42 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=35.7
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCC
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 539 (830)
.....+..|.+.|-+++-.-+++.|- .+..||.-+--+-+++++|.+...+ +.|...|+.||.-....-.
T Consensus 636 ~lekA~eiC~q~~~~~E~VYlLgrmG--------n~k~AL~lII~el~die~AIefvKe--q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 636 NLEKALEICSQKNFYEELVYLLGRMG--------NAKEALKLIINELRDIEKAIEFVKE--QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred CHHHHHHHHHhhCcHHHHHHHHHhhc--------chHHHHHHHHHHhhCHHHHHHHHHh--cCCHHHHHHHHHHhhcCcH
Confidence 33444445555444444444444332 1222232233334445555444433 4477788888876665544
Q ss_pred hHHHH
Q 047408 540 GCDAI 544 (830)
Q Consensus 540 ~~~A~ 544 (830)
+-.++
T Consensus 706 ~~~~l 710 (846)
T KOG2066|consen 706 FIKAL 710 (846)
T ss_pred HHHHH
Confidence 44443
No 332
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=70.34 E-value=1.4e+02 Score=31.56 Aligned_cols=198 Identities=12% Similarity=-0.000 Sum_probs=114.7
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhC--CCCc---hhHHhHHHHHHHhcCCHHHHHHHhhh---CC---CCChh--
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHG--ISAD---RNVANAIVDMYVKCGVLVLARSLFDM---IP---AKDLI-- 525 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~---m~---~~d~~-- 525 (830)
.++..+..+.+..|..+++...-.-.+..- .... ...|-.|...|-+--++.+++.+-.. .+ ....-
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 356677777777777766554322222111 1111 22333444455554455555444331 11 11111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--ChhHHHHHHHHHHccCCHHHHHHHHHHh---HhhcCCCCCcch
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIE---P--DEVSFISVLYACSHSGLVDEGWRFFNMM---RYECNIEPKLEH 597 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---P--d~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~ 597 (830)
.--+|..++.-.+.++++++.|+...+---. | .-..+++|-+-+.+..++++|.-+.... ...+++.--..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 2233556666677899999999987752111 1 1236888888899999999988766543 334455443344
Q ss_pred HHHHH-----HHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 598 YACMV-----DLLSRTGNLSEAYRFIEMM-------PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 598 y~~lv-----~~l~r~g~~~eA~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
|-+++ -+|...|++-+|.+.-++. +..| -......+..-|+..|+.|.|..-++.+...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 44433 3566677776666655543 3333 2345677888899999999999888877643
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.16 E-value=18 Score=39.16 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047408 545 ATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--- 621 (830)
Q Consensus 545 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--- 621 (830)
++|..+...--.|+.+...+.+ .++.|.++.+.+....... -+.....+..|++..+.+.|++++|+.+-..|
T Consensus 311 ~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 311 QLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3445555544567766555544 4678888888887766542 34445667788888888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 622 PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 622 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.++ ++.+...-...-...|-++++...+++++.++|+.
T Consensus 387 eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 387 EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 222 22222222333466677888888888888887653
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.56 E-value=8.1 Score=24.77 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=24.6
Q ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 662 GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 662 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999887654
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.26 E-value=6.6 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.1
Q ss_pred hHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 663 YYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 663 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++..++.+|.+.|++++|.+.++...+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456789999999999999999988764
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.12 E-value=1.2e+02 Score=34.37 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=59.8
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHH
Q 047408 501 DMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWR 580 (830)
Q Consensus 501 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 580 (830)
+...+.|+++.|.++..+. .+..-|..|..+..+.|+...|.+.|.+... |.+|+-.+...|+-+.-..
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3445667777777766543 3566788888888888888888777776554 3455555555565443222
Q ss_pred HHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 581 FFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 581 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+-.... +.|. .|.-.-+|...|++++..+++.+-
T Consensus 714 la~~~~-~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAK-KQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHH-hhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 222222 1121 222233455677777777776655
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.23 E-value=1.9e+02 Score=31.26 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=61.4
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLS-RTGNLSEAYRFIEMMPV--APD------ATIWGSLL 634 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~-r~g~~~eA~~~~~~m~~--~p~------~~~~~~ll 634 (830)
+..+.+.|.+..|.++.+-+. .+.|+ +..--.+||.|+ |+++++--+++++.... ..+ ...|..-|
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 466788999999999998876 67775 444556688776 88888888888887532 111 23444444
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHhccCCC
Q 047408 635 CGCRIHHE--------------VKLAEKVAEHVFELEPD 659 (830)
Q Consensus 635 ~~~~~~g~--------------~~~a~~~~~~~~~l~p~ 659 (830)
.-+...+. .+.|..++++++..-|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 44443333 37888888888877775
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.91 E-value=46 Score=31.50 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccC
Q 047408 541 CDAIATFNDMRQAGIEPDEV-SFISVLYACSHSG 573 (830)
Q Consensus 541 ~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g 573 (830)
++|+.-|++.+. +.|+.. ++..+..|+...+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 455666666666 788874 7777777776554
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.93 E-value=55 Score=35.58 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=89.6
Q ss_pred cCCHHHH-HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047408 572 SGLVDEG-WRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 572 ~g~~~~a-~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
.|++-.| .++|..+. .+.-.|+.. ..........|.++.|++.+... .+.....+...++......|+.++|..
T Consensus 302 ~gd~~aas~~~~~~lr-~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALR-NQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHH-hCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4555544 44555554 444445433 33334467789999999999876 234455677888888888899999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeC
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAG 713 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~ 713 (830)
.++.++.-+-+++.....-+----..|-+|++.-.++..-.-..+ ....|+..-.....|-.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceeccCc
Confidence 999999877666665444333344567788888888877654333 333477665555445444
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.20 E-value=9.3 Score=24.14 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.+..++...|+.++|...++++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 34556677888888888888888888863
No 341
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.03 E-value=71 Score=27.31 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||++.|-++-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46788888888877663 344444445666788899999965555666888888877654 466888888888887776
Q ss_pred cCCCCChhHHH
Q 047408 553 AGIEPDEVSFI 563 (830)
Q Consensus 553 ~g~~Pd~~t~~ 563 (830)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 54 44444443
No 342
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.97 E-value=29 Score=29.01 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 613 EAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 613 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
.++.-+-.+.+-|++.+..+-|.||++-+|+..|.++++-+...-..+...|-
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~ 80 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYP 80 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHH
Confidence 33333444567899999999999999999999999999976533322333443
No 343
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.33 E-value=1e+02 Score=30.67 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=52.2
Q ss_pred HHHHHHH--HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 528 TIMIAGY--GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 528 ~~li~~~--~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
...|.|| ..++++++|++++-.- .+.|+... -++.++...|..+.|..++..+. ..-.+.+....+...
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-
Confidence 3344443 3456666666665221 12222221 35555555677777777776543 111112222333333
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047408 606 SRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 641 (830)
...|.+.||..+.++.+-+-....|..++..|....
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 445777777777777643222346666666665433
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.05 E-value=3.1e+02 Score=32.60 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=29.8
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHH----HhccCChhHHHHHHHH
Q 047408 66 YNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQL----CADLKSLEDGKKVHSI 121 (830)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~ 121 (830)
-..-|..+.+...+.-|+.+-..- +.++.+...+.+. +.+.|++++|...+-+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~ 393 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIE 393 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345566777777777777766543 3334444443333 3356677776655543
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.90 E-value=29 Score=29.29 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=34.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 614 AYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 614 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
++.-+-.+.+-|++.+..+-|.||++.+|+..|.++++-+...-.+....|--
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 33333345678999999999999999999999999999776443333334443
No 346
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=63.58 E-value=16 Score=30.83 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=51.6
Q ss_pred HHHhhhhHHHHHHHHHhhcCCCCCeEEEEecccccccccchhhhhhccccceEEEecCC
Q 047408 756 EVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSN 814 (830)
Q Consensus 756 ~~~l~~hse~la~a~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 814 (830)
+..|.-|.|.-++--=-.+.-+|..+-|.--++-|..|-.+|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 67789999998887555555669999999999999999999999999999999998854
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.52 E-value=3e+02 Score=32.27 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHhhcCCCCeehHHHHHHHHH--hcCChhHHHHHHHHH
Q 047408 323 RVFEKMGERSVVSWTSMIAGYA--REGVFDGAIRLFRGM 359 (830)
Q Consensus 323 ~~f~~m~~~d~~~~~~li~~~~--~~g~~~~A~~l~~~m 359 (830)
-+|..++..+....--++++.. ..+..++|.+++++-
T Consensus 289 ~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~ 327 (608)
T PF10345_consen 289 LVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKA 327 (608)
T ss_pred eEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHH
Confidence 4566666666655555555543 334444565555544
No 348
>PF15161 Neuropep_like: Neuropeptide-like
Probab=63.40 E-value=2.3 Score=30.57 Aligned_cols=16 Identities=44% Similarity=0.933 Sum_probs=11.8
Q ss_pred ecccccccccchhhhhh
Q 047408 785 KNLRVCGDCHEMAKFMS 801 (830)
Q Consensus 785 knlr~c~dch~~~k~~s 801 (830)
..-|-|.|||.|- |+-
T Consensus 11 aesRPCVDCHAFe-fmq 26 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQ 26 (65)
T ss_pred CCCCCchhhHHHH-HHH
Confidence 3578999999875 543
No 349
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.35 E-value=2.1e+02 Score=30.91 Aligned_cols=160 Identities=21% Similarity=0.295 Sum_probs=86.4
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCCC-----C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIPA-----K-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLY 567 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 567 (830)
....-+.+-|..||+++.|.+.+.+... + -+-.|-.+|..-.-.|+|...+..-.+..+. |+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~-------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA-------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--------
Confidence 3456788999999999999999988541 1 2234555555555566766666666555542 211
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHH
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMP---------VAP-DATIWGSLLCGC 637 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~---------~~p-~~~~~~~ll~~~ 637 (830)
+..... .+.+....+..+..+..+ +++.|.+.|-..+ +.| |..+|. .+.+.
T Consensus 220 --------------~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcAL 280 (466)
T KOG0686|consen 220 --------------NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCAL 280 (466)
T ss_pred --------------hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhh
Confidence 111111 344456666666666655 5555555443331 334 334444 33443
Q ss_pred HhcCCHHHHH-----HHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 638 RIHHEVKLAE-----KVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 638 ~~~g~~~~a~-----~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
..-++-+.-. ..|+..++++|+- ..+|..-|. +++..-.++.++++
T Consensus 281 Atfdr~~Lk~~vi~n~~Fk~flel~Pql---r~il~~fy~--sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 281 ATFDRQDLKLNVIKNESFKLFLELEPQL---REILFKFYS--SKYASCLELLREIK 331 (466)
T ss_pred ccCCHHHHHHHHHcchhhhhHHhcChHH---HHHHHHHhh--hhHHHHHHHHHHhc
Confidence 3333333222 3456677787762 333433333 45655555555544
No 350
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.48 E-value=1.4e+02 Score=28.15 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=81.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc-hHHHH--HHHHHhcC
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE-HYACM--VDLLSRTG 609 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~l--v~~l~r~g 609 (830)
+++.|..++|+.-|..+.+.|..-=.+ .-..........|+..+|...|+++-.+..+ |.+. -..-| .-+|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 467788899999999998877654333 1222334467789999999999988755322 2211 11111 23466788
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047408 610 NLSEAYRFIEMMPVAPD---ATIWGSLLCGCRIHHEVKLAEKVAEHVFE 655 (830)
Q Consensus 610 ~~~eA~~~~~~m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 655 (830)
.+++.....+.+..+.+ ...-.+|.-+-.+.|++..|...|+.+.+
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99988888887743333 34556777777889999999999988876
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.16 E-value=15 Score=22.14 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhc
Q 047408 405 VSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 405 ~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
+...|...|...|++++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345678889999999999988763
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.63 E-value=44 Score=33.00 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCHHHHH-------HHHHHHhccC--CC----CcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 628 TIWGSLLCGCRIHHEVKLAE-------KVAEHVFELE--PD----NTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~-------~~~~~~~~l~--p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
.++.-+.+.|+..|+.+.-. ..++++++.+ |. ......+++.++.+.|+.++|.+.+..+-..
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45666677788888855444 4444555433 22 2356778999999999999999999887653
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.31 E-value=90 Score=35.03 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC--Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPAK--DL---ISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~~--d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
.|+.-|.+++++++|..++..|.-. .. .+.+.+.+.+.+..-..+....++.+...
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 5777899999999999999998622 22 23344445555555455555556655543
No 354
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.10 E-value=1.9e+02 Score=28.81 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH--HHhc-CCHHHHHHHHHHHhccCCCCcch--HHHHHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM---PVAPDATIWG---SLLCG--CRIH-HEVKLAEKVAEHVFELEPDNTGY--YVLLANVY 671 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~---~ll~~--~~~~-g~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y 671 (830)
+.-+..|++.+|+++|++. .+..+..-|. -++.+ |... .|.--+.+++++-.+++|.-... +..|-.+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 3445678888999998876 2333333333 22322 4333 67778888999999999985443 44444443
No 355
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.14 E-value=2e+02 Score=28.83 Aligned_cols=50 Identities=14% Similarity=-0.059 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHhc------cCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHVFE------LEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.+.+...+++|-..+.+... --|+.-..|+..+-+|--..++..|++.++
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 34444555555555544321 123333346666666666667777766643
No 356
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=58.89 E-value=3.2e+02 Score=31.10 Aligned_cols=127 Identities=12% Similarity=0.103 Sum_probs=87.0
Q ss_pred cchhHHHHHHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHH
Q 047408 64 KNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMF 142 (830)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y 142 (830)
..|+.+|.---+....+.+...+..++..-|... -|......=.+.|..+.+..++++-+.. +..+ ..+|.......
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~S-vdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLS-VDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhH-HHHHHHHHHHH
Confidence 4588888766666666667777777776554433 3344444445678888889999887763 3344 56666665554
Q ss_pred Hh-CCChHHHHHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 047408 143 VT-CGDLKEGRRVFNKIDN------GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSL 192 (830)
Q Consensus 143 ~~-~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 192 (830)
.. .|+.+..++.|+.... .....|...|.--..++++.....++++..+-
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 4777788888876542 23456888888888889999999999988763
No 357
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.82 E-value=1.1e+02 Score=26.34 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=31.3
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLN 260 (830)
Q Consensus 216 ~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 260 (830)
.+++..+.+.+ ..-|..|+.-|-..|.+++|++++.++..
T Consensus 28 ~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 35555555533 23589999999999999999999999887
No 358
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.62 E-value=1.9e+02 Score=31.24 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=48.3
Q ss_pred CHHHHHHHH---HHHHhcCCHHHHHHHHHHHhccCCC-CcchHHHHHHHHh-hhcCHHHHHHHHHHHHh
Q 047408 626 DATIWGSLL---CGCRIHHEVKLAEKVAEHVFELEPD-NTGYYVLLANVYA-EAEKWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m~~ 689 (830)
|...|.+|. ..+.+.|-+.-|.+..+-++.++|+ ||-.-.++++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445555553 4578889999999999999999999 8877777788877 66777767777665443
No 359
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.78 E-value=4e+02 Score=31.93 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=80.1
Q ss_pred hHHHHHHHH-HhcCChHHHHHHHHHHHHc----CCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHH
Q 047408 526 SWTIMIAGY-GMHGFGCDAIATFNDMRQA----GIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYAC 600 (830)
Q Consensus 526 ~~~~li~~~-~~~g~~~~A~~l~~~m~~~----g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 600 (830)
.|+++-.-. ...|++++|+++-+..... -..+..+.+..+..+..-.|++++|..+.....+. .-.-++.++..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~ 537 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHH
Confidence 566554433 3456777777777766653 11122223444445555667777777766554321 11123333333
Q ss_pred HH-----HHHHhcCCHHHHH--HHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC
Q 047408 601 MV-----DLLSRTGNLSEAY--RFIEMM-----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFEL----EPDN 660 (830)
Q Consensus 601 lv-----~~l~r~g~~~eA~--~~~~~m-----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l----~p~~ 660 (830)
.+ ..+-..|+...|. ..+... +-+|- ..+..-+++++. +.+.++.-+.+.+++ .|..
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhhhhcccch
Confidence 22 2344556332222 222211 11221 233334444433 255555555544433 2322
Q ss_pred c---chHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 661 T---GYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 661 ~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
- ..+.+|+.++...|+.++|......+..-..
T Consensus 615 ~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 615 LLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 1 1234778888888888888888777765433
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.66 E-value=2.5e+02 Score=32.36 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh-cCHHHHHHHH
Q 047408 610 NLSEAYRFIEMMP--VAPDATIWGSLLCGCR--IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA-EKWEEVKKLR 684 (830)
Q Consensus 610 ~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~A~~~~ 684 (830)
+...|.++|.... -.+++..|.++...+- ...+.+.|...++++-+.++ +.+...++..|.-. ++++.+.-..
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 4566777776652 2233333433332222 33477888888888877773 33344444443322 7777777777
Q ss_pred HHHHhCCCcC
Q 047408 685 EKISRRGLKK 694 (830)
Q Consensus 685 ~~m~~~g~~~ 694 (830)
..+++.|.+-
T Consensus 421 ~~~a~~g~~~ 430 (552)
T KOG1550|consen 421 LYLAELGYEV 430 (552)
T ss_pred HHHHHhhhhH
Confidence 7676666543
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.54 E-value=3.2e+02 Score=30.03 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=11.3
Q ss_pred HHHHhhcCCChHHHHHHHhhcCC
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGE 330 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~ 330 (830)
.+...+..|+.+-+..+++.-..
T Consensus 171 pL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 171 PLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCC
Confidence 33344455565555555554333
No 362
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.11 E-value=1.4e+02 Score=30.07 Aligned_cols=183 Identities=13% Similarity=0.052 Sum_probs=112.6
Q ss_pred cCCHHHHHHHhhhCC----CC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCC--ChhHHHHHHHHHHccC
Q 047408 506 CGVLVLARSLFDMIP----AK---DLISWTIMIAGYGMHGFGCDAIATFNDMRQ---AGIEP--DEVSFISVLYACSHSG 573 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~----~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~P--d~~t~~~ll~a~~~~g 573 (830)
..++++|..-|++.. ++ ..-..-.||..+.+.|++++.++.|.+|+. +.+.- ...+.++++.--+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346778888777653 22 223445688899999999999999999874 22222 2345777777666666
Q ss_pred CHHHHHHHHHHhHhhc----CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-------HHHHHHHHH
Q 047408 574 LVDEGWRFFNMMRYEC----NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMP-------VAPD-------ATIWGSLLC 635 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~----~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-------~~p~-------~~~~~~ll~ 635 (830)
..+.-.++++...... +-.....+-+-|..+|...|.+.+-.++++++. -+.| ..+|.-=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6555555554332111 112233455567778877777777777777661 0111 134555566
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcch------HHHHHHHHhhhcCHHHHHH-HHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGY------YVLLANVYAEAEKWEEVKK-LREKIS 688 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~------~~~l~~~y~~~g~~~~A~~-~~~~m~ 688 (830)
.|...++-..-..++++++.+...-|.. -.+=+.++.+.|+|++|.. .|+..+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 7777788888888899888665332221 2233667888999999854 344433
No 363
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.39 E-value=30 Score=28.67 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=24.4
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.+++.++.+|+|...-..++..|...|++++|.+.+-.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455566667776666677777777777777766655444
No 364
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.27 E-value=2.2e+02 Score=27.92 Aligned_cols=156 Identities=12% Similarity=0.008 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHH
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHG 482 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 482 (830)
+.++|-|.--+...|+++.|.+.|+...+-|+ ....+...---++.-.|+.+.|.+=+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp---------------------~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---------------------TYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCC---------------------cchHHHhccceeeeecCchHhhHHHHH
Confidence 56888888888999999999999999887764 222222222223334566666655444
Q ss_pred HHHHhC-CCCchhHHhHHHHHHHhcCCHHHHHH-HhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 483 YILRHG-ISADRNVANAIVDMYVKCGVLVLARS-LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 483 ~~~~~g-~~~~~~~~~~Li~~y~k~g~~~~A~~-~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
..-+.. -+|-...|--|+ ...=++.+|.. +.++....|-.-|..-|..|.--.-.++ .+|++.... -. |..
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~-a~-~n~ 230 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKAD-AT-DNT 230 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-cc-chH
Confidence 333322 112122222222 12224445543 3344445566667766666543332222 234444331 11 211
Q ss_pred --------HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 561 --------SFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 561 --------t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
||--+..-+...|++++|..+|+...
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34444445555566666666555443
No 365
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.59 E-value=2.9e+02 Score=29.01 Aligned_cols=164 Identities=13% Similarity=0.152 Sum_probs=92.0
Q ss_pred CHHHHHHHhhhC-C-CCChhhHHHHHHHHHhcC-----ChHHHH--------HHHHHH-HHcCCCCC--h----hHHHHH
Q 047408 508 VLVLARSLFDMI-P-AKDLISWTIMIAGYGMHG-----FGCDAI--------ATFNDM-RQAGIEPD--E----VSFISV 565 (830)
Q Consensus 508 ~~~~A~~~f~~m-~-~~d~~~~~~li~~~~~~g-----~~~~A~--------~l~~~m-~~~g~~Pd--~----~t~~~l 565 (830)
.++.+.++...+ + +.+...|..++..+..-. ..+... +++..+ .+-|..++ . ..+...
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 466777777777 3 667778877766543221 111111 122222 22355554 2 223332
Q ss_pred -H-HHHHccCCHHHHHHHHHHhHhhcCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047408 566 -L-YACSHSGLVDEGWRFFNMMRYECNI---EPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIH 640 (830)
Q Consensus 566 -l-~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 640 (830)
+ .+|.+.+-.+++.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+....
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 2 3443444578899999887753111 3355666777777788888777666666665566788888999998888
Q ss_pred CCHHHHHHHHHHHhccC-CCCcchHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELE-PDNTGYYVLLANVY 671 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~-p~~~~~~~~l~~~y 671 (830)
.+.+.-.++++.++.-+ -.....+..+..++
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHHHHh
Confidence 99999999999998742 12223455555554
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.01 E-value=1.6e+02 Score=32.02 Aligned_cols=51 Identities=6% Similarity=-0.043 Sum_probs=34.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHH--ccCCHHHHHHHHHHhHh
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACS--HSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 587 (830)
.++++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 568888888888888876 555554 2333334443 45677888888887653
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.60 E-value=28 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=18.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC
Q 047408 169 LMHEYSKTGNFKESLYLFKKMQSLG 193 (830)
Q Consensus 169 li~~~~~~g~~~~A~~l~~~m~~~g 193 (830)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567778888888888888777543
No 368
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.54 E-value=1.1e+02 Score=30.40 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=67.3
Q ss_pred hcCCHHHHHHHhhhCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 047408 505 KCGVLVLARSLFDMIPAKDLISW--TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFF 582 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~ 582 (830)
..+++++|.+.+-.- .+..| .-++.++..+|+.+.|+.+++.+.-..-.++.+ ..++.+ ...|.+.||+.+-
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~--~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEAL--TLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHH--HHHHHH-HHcCCHHHHHHHH
Confidence 446788888877443 33222 237788888999999999998865432222222 223333 4558999999887
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 047408 583 NMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDAT 628 (830)
Q Consensus 583 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~ 628 (830)
+....+ -....+..++..+.....-....+.+-.+|+.+...
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 665421 113456666666654443334444455667766553
No 369
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.67 E-value=5.6e+02 Score=31.73 Aligned_cols=250 Identities=11% Similarity=0.011 Sum_probs=121.0
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCc
Q 047408 153 RVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDV 232 (830)
Q Consensus 153 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~ 232 (830)
.+...+..+|...--.-+..+.+.+. +++...+.+... .+|...-...+.++...+.. ......+...+..+|.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~--~~~~~~L~~~L~~~d~ 698 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEV--LPPAPALRDHLGSPDP 698 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhc--cCchHHHHHHhcCCCH
Confidence 44444556666666666666666654 334444444443 23433334444444443210 1111112222333455
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMY 312 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y 312 (830)
..--..+..+...+..+ . ..|-++++ .+|...-...+.++...+..+. + ...--+++..+....+.++
T Consensus 699 ~VR~~A~~aL~~~~~~~-~-~~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l----~~~l~D~~~~VR~~aa~aL 766 (897)
T PRK13800 699 VVRAAALDVLRALRAGD-A-ALFAAALG---DPDHRVRIEAVRALVSVDDVES---V----AGAATDENREVRIAVAKGL 766 (897)
T ss_pred HHHHHHHHHHHhhccCC-H-HHHHHHhc---CCCHHHHHHHHHHHhcccCcHH---H----HHHhcCCCHHHHHHHHHHH
Confidence 44445555554433221 1 12222222 3455555556666665544321 1 1222355666666666666
Q ss_pred hcCCChHH-HHH-HHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhH
Q 047408 313 SKCGDLDG-AIR-VFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDV 390 (830)
Q Consensus 313 ~k~g~~~~-A~~-~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~ 390 (830)
...+..+. +.. +..-+..+|...-.+.+.++.+.|....+...+..+... +|...=...+.++...+.- ++...
T Consensus 767 ~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~~-~a~~~ 842 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAAD-VAVPA 842 (897)
T ss_pred HHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhcccc-chHHH
Confidence 66655432 222 333344567666677777777777765554445444432 4444445556666666543 33333
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHh
Q 047408 391 HDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFN 427 (830)
Q Consensus 391 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 427 (830)
+..+++ .++..+-..-+.++.+.+....+...+.
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~ 876 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALT 876 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 333332 4566677777777776532334444443
No 370
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.23 E-value=1.9e+02 Score=30.11 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC--hhhH--HHHHHHHHhcCChHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD--LISW--TIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--~~~~--~~li~~~~~~g~~~~A~~l~ 547 (830)
..+.+|+.++..+.+.|- ..|+ +..+...--...+.+.++| +.+| ..+..+-.+.|+..+|.+.|
T Consensus 230 ~Ti~~AE~l~k~ALka~e----~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAGE----TIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred hhHHHHHHHHHHHHHHHH----HHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 346677777777777551 1121 2211111111222333333 3333 23444445678888888888
Q ss_pred HHHHHcCCCCChhH---HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047408 548 NDMRQAGIEPDEVS---FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLSRTGNLSEAYRFIEMMP 622 (830)
Q Consensus 548 ~~m~~~g~~Pd~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 622 (830)
+.+.++ .|-... --.|+.+|.....+.+...++..-- +.. .|. ...|++ ++. ++..+-++
T Consensus 299 RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-dis-lPkSA~icYTa---ALL------K~RAVa~k-- 363 (556)
T KOG3807|consen 299 RDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DIS-LPKSAAICYTA---ALL------KTRAVSEK-- 363 (556)
T ss_pred HHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccc-CcchHHHHHHH---HHH------HHHHHHhh--
Confidence 887663 331111 2235555555444444333332211 101 122 112221 111 11222222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 623 VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 623 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+.||..+-..|-.+ -..|.++..++.+.+|.-|.+.
T Consensus 364 Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 364 FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHH
Confidence 24555443333222 1246677778888888876553
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.09 E-value=1.1e+02 Score=29.76 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=8.4
Q ss_pred cchHHHHHHHHHhcCCHHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEA 614 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA 614 (830)
++.+..|+..|-+.|++++|
T Consensus 178 ~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 178 PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHHHhcchhhh
Confidence 34444444444444444433
No 372
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.03 E-value=37 Score=33.59 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=47.1
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 622 PVAPDAT-IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 622 ~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
-+.|... -|..=.-.+.+..+++.+..-..+++++.|+....+..|+........+++|..++.+..
T Consensus 38 ~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 38 CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 4566653 344444445566777777777778888888877777888888888888888887777664
No 373
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.86 E-value=1.3e+02 Score=30.06 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=20.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CChh
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIE-PDEV 560 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~-Pd~~ 560 (830)
....|+++.|+++.+-+++.|.. |+.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f 120 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQF 120 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccc
Confidence 34668899999999988888754 5543
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.02 E-value=30 Score=20.65 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.|..+...|...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455556666666666666666666554
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.72 E-value=26 Score=21.73 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877766665543
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=47.71 E-value=37 Score=22.60 Aligned_cols=31 Identities=13% Similarity=-0.029 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHhccCCCC
Q 047408 630 WGSLLCGCRIHHEVKLAEKV--AEHVFELEPDN 660 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~--~~~~~~l~p~~ 660 (830)
|-++...+...|++++|+.+ ++-+..++|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 55666667778888888888 44666666653
No 377
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=47.49 E-value=22 Score=38.84 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHcCccCCCCcccc-ccchhhhHHHhhhhHHHHHHHHHh----hcCCCCCeEEEEecccccccccch
Q 047408 722 KIESLLKRLRLEMKREGYFPKTRYALI-NADEMEKEVALCGHSEKLAMAFGI----LNLPAGQTIRVTKNLRVCGDCHEM 796 (830)
Q Consensus 722 ~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~hse~la~a~~~----~~~~~~~~~~~~knlr~c~dch~~ 796 (830)
.....-++.+..+.+.|+.| ...+.. ...+|.....|..+-.+ ..+||. ++-.+..|+.++=-+--|.+ +-+
T Consensus 273 d~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~~~~~~~~v~Klvev~g-~p~ 349 (405)
T COG1488 273 DPRELSEKVRAHLDKLGYDP-VKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAKPRPPLDIVYKLVEVNG-KPV 349 (405)
T ss_pred CHHHHHHHHHHHHHHcCCCc-eEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhhccCCCCCcceeEEEEEEECC-ccc
Confidence 34455567888899999999 444445 45556666666666666 888884 44455566766644444444 888
Q ss_pred hhhhhccccceEEEecC
Q 047408 797 AKFMSKTARREIVLRDS 813 (830)
Q Consensus 797 ~k~~s~~~~r~i~~rd~ 813 (830)
+| ||+--|+.-+.|..
T Consensus 350 ~K-is~~Pgkk~~~r~~ 365 (405)
T COG1488 350 AK-ISKNPGKKQVYRSA 365 (405)
T ss_pred ee-ecCCCccceeecch
Confidence 88 78888888887766
No 378
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.16 E-value=4.4e+02 Score=29.26 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=97.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChh-------HHHHHHH-HHHccCCHHHHHHHHHHhHhhc-CCCCCcch
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQA-GIEPDEV-------SFISVLY-ACSHSGLVDEGWRFFNMMRYEC-NIEPKLEH 597 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~-------t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~ 597 (830)
..++..-.-.|++.+|++-...|.+- .-.|... -.-.++. -|...|.+++|...|....+.. .+.-....
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444455679999999999999862 2234421 1222333 3456788999999887765331 11111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH------HHH--HHH--HHhcCCHHHHHHHHHHHhccCCC------Cc
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMMPVAPDATIW------GSL--LCG--CRIHHEVKLAEKVAEHVFELEPD------NT 661 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~------~~l--l~~--~~~~g~~~~a~~~~~~~~~l~p~------~~ 661 (830)
-..+.-.|.+.|+-++-.++.+... .|+..++ ++. +.| ....|++.+|++...+.+++.-. .+
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 3345667889999888888888873 1211111 111 222 25678999999999888876411 12
Q ss_pred chHHHHHHHHhhhcCHHHHHHH
Q 047408 662 GYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 662 ~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
-..++|+++....|+-.|+.+.
T Consensus 486 ~~LvLLs~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNM 507 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhc
Confidence 3578999999999999988775
No 379
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=46.67 E-value=1.3e+02 Score=25.47 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=53.3
Q ss_pred ChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 047408 111 SLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQ 190 (830)
Q Consensus 111 ~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 190 (830)
.-++|..+-+.+...+-. . ..+.-.-+..+...|++++|..+.+....||...|-+|-.. +.|..+++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~-E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-E-EAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCch-H-HHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 356666666666554311 2 23333334456788999999999999999999999888543 5666666666666777
Q ss_pred HcC
Q 047408 191 SLG 193 (830)
Q Consensus 191 ~~g 193 (830)
.+|
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 665
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.96 E-value=34 Score=27.41 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=21.0
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHH
Q 047408 571 HSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRF 617 (830)
Q Consensus 571 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~ 617 (830)
+....++|+..+....++..-.|+ -.+.++|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433222222 23445555555555555555443
No 381
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=45.95 E-value=4.5e+02 Score=28.97 Aligned_cols=174 Identities=10% Similarity=0.012 Sum_probs=101.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChH
Q 047408 70 IGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLK 149 (830)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~ 149 (830)
|.++...| ..+++.+........++..+.....++....+......+.+.+ . .++ ..+....+..+.+.+...
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L-~---d~~-~~vr~aaa~ALg~i~~~~ 117 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVL-Q---AGP-EGLCAGIQAALGWLGGRQ 117 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHh-c---CCC-HHHHHHHHHHHhcCCchH
Confidence 66777777 5677777777655555554444444444333332222333322 2 233 557778888888888877
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC
Q 047408 150 EGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD 229 (830)
Q Consensus 150 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~ 229 (830)
....+.......+...-.+.+.++...+. ++...+....+ .+|...-..-+.+++..+..+.... +-.-...
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~---L~~al~d 189 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSEST---LRLYLRD 189 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHH---HHHHHcC
Confidence 77777666666676666566666665442 23334444333 4666666777777777664322222 2222445
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 047408 230 RDVVSWNCMISGYIANGVAEKGLEVFKEML 259 (830)
Q Consensus 230 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 259 (830)
.|...-..-+.+....|. .+|...+....
T Consensus 190 ~~~~VR~aA~~al~~lG~-~~A~~~l~~~~ 218 (410)
T TIGR02270 190 SDPEVRFAALEAGLLAGS-RLAWGVCRRFQ 218 (410)
T ss_pred CCHHHHHHHHHHHHHcCC-HhHHHHHHHHH
Confidence 677777777777777777 66666665533
No 382
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=45.86 E-value=4.8e+02 Score=29.25 Aligned_cols=189 Identities=11% Similarity=0.128 Sum_probs=98.2
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYAC 569 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 569 (830)
|....-++++.++..-+..-.+.+-.+|. ..+-..+-.+...|.++ ..++-..+++++.+ ..-|.+.+...|.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHH
Confidence 33444455555555555555555555443 23445566666667666 45666667776666 344555555555555
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPK------LEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPDATIWGSLLCGCRI 639 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~ 639 (830)
...++.+.+..+|..+.. .+-|. .+.|.-++..-+ .+.+.-+.+..+. +..--.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 555666667777766542 23331 123444443222 2333333433333 222223344444445566
Q ss_pred cCCHHHHHHHHHHHhccCCCCcc--------------------hHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 640 HHEVKLAEKVAEHVFELEPDNTG--------------------YYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~~--------------------~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
..|+++|.++.+.+++++..|.- -|...+|+-..-.++-++..-++..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKL 285 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence 66777777777766666554432 2444455544455666666555543
No 383
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.74 E-value=4e+02 Score=29.38 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=32.3
Q ss_pred ehHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 047408 334 VSWTSMIAGYAR---EGVFDGAIRLFRGMVREGIEPDVYAITSILHAC 378 (830)
Q Consensus 334 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 378 (830)
..+..+++++.+ .++++.|+..+..|.+.|..|....-..+..++
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345566777666 478999999999999999888755544444443
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.64 E-value=66 Score=36.05 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLSRTGNLSEAYRFIEMM-PV-APDATIWGSLLCGCRIHHEVKLAE 647 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 647 (830)
.|....|...+.... ...|. ......|.+++.+.|...+|-.++.+. .+ ...+.++-++..++....|++.|.
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 455555555554443 33331 223344566666777777777766553 22 234566778888888888999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHh
Q 047408 648 KVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 648 ~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
+.++.+++++|+++..-..|-.+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999998877666644444
No 385
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.98 E-value=5.9e+02 Score=30.05 Aligned_cols=136 Identities=12% Similarity=0.019 Sum_probs=81.7
Q ss_pred HHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHH
Q 047408 72 RFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKE 150 (830)
Q Consensus 72 ~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 150 (830)
...+.|++.++..+-..+......|. .|-.+..... ....+ ++-..+.+..-.|-...+-...+..+.+.++...
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 44677888888888777754433333 4444443322 22333 4444444432222213444455556667788888
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 047408 151 GRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGN 213 (830)
Q Consensus 151 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 213 (830)
..+ |..-+..+...--....+....|+.++|....+.+-..|- ..+.....++..+...|.
T Consensus 118 ~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 118 LLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 887 4432334555556677788889998888888777766553 346677788888776664
No 386
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.49 E-value=2.9e+02 Score=26.82 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=19.7
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcc
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTG 662 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~ 662 (830)
+|-+...++.|..-++++++++|....
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 455566778888888888888887543
No 387
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.34 E-value=1e+02 Score=32.27 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=71.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-P---VAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.+|--=.+-|.+..++..|.+.|.+- . -.|| ++.|+.-..+-...||+..++.-..+++.++|.+...|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34545566788899999999999875 1 2343 4667766666677899999999999999999999999998888
Q ss_pred HHhhhcCHHHHHHHHH
Q 047408 670 VYAEAEKWEEVKKLRE 685 (830)
Q Consensus 670 ~y~~~g~~~~A~~~~~ 685 (830)
.+....++++|....+
T Consensus 162 c~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999888776544
No 388
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.32 E-value=74 Score=34.81 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.8
Q ss_pred hCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 620 MMPVAPDA--TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 620 ~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
...++|.. .++++-++.+.+++|+..|-.++++++++.|..
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 33566643 567777888999999999999999999999864
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.59 E-value=1.7e+02 Score=25.24 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888889999999999999888876
No 390
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.38 E-value=2.6e+02 Score=27.05 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=41.7
Q ss_pred HHHHHhhcCCChHHHHHHHhhcCCCCeeh--HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 047408 307 TLLDMYSKCGDLDGAIRVFEKMGERSVVS--WTSMIAGYAREGVFDGAIRLFRGMVREG 363 (830)
Q Consensus 307 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 363 (830)
.|.......|..|+|.+.++....++-.+ -..-.+.+...|+-++|..-|.+.+..+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 35556677789999999998887764333 2223357888899999999998888765
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=43.33 E-value=96 Score=28.26 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 611 LSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 611 ~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
-+.|.++++-|+- ..............|++..|..+.+.++..+|+|...-.+.++.|...|.-.+
T Consensus 57 ~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3566777777741 22222334456678999999999999999999999999999988887775443
No 392
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.95 E-value=5.9e+02 Score=29.51 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCC-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047408 196 ADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRD-VVSWNCMISGYIANGVAEKGLEVFKEMLNLGF 263 (830)
Q Consensus 196 p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 263 (830)
+....|..+++.+.... .++-.+++.++.. . ...|..++++....|-.....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR~~~----~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLRTLS----EEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHHhCC----HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34456777777776554 6666667766654 3 57888888888888876655555555544433
No 393
>PF15469 Sec5: Exocyst complex component Sec5
Probab=42.78 E-value=1.8e+02 Score=27.82 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=43.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHE 642 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 642 (830)
.-|.-|.+.|+++.+...|.....-++-.. ....+. .-+++..+.+++.. ...|..|.... ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~---------~v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQ---------KVWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 445566777777777777766653322111 111111 12334444443331 12333333222 46
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHH
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
.+....+.+.+++++|+...++..|
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 6777777788888877654444433
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.38 E-value=1e+02 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=42.2
Q ss_pred CcchHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 047408 162 KVFIWNLLMHEYSKTGN-FKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVG 212 (830)
Q Consensus 162 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 212 (830)
+-.+|+.++.+.++... ---+..+|..|.+.+.++++.-|..+++++.+..
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 45679999999977666 4567899999999889999999999999987643
No 395
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.26 E-value=4.1e+02 Score=27.46 Aligned_cols=115 Identities=8% Similarity=0.004 Sum_probs=79.3
Q ss_pred CCChHHHHHHHhhcCC-----CCeehHHHHHHHHHhc-CC-hhHHHHHHHHHHH-cCCCCCcchHHHHHHHhhccCcchh
Q 047408 315 CGDLDGAIRVFEKMGE-----RSVVSWTSMIAGYARE-GV-FDGAIRLFRGMVR-EGIEPDVYAITSILHACACDGLLEI 386 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~-g~-~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~~~~~~ 386 (830)
+..+.+|+++|+.... .|...-..+++..... +. ...-.++.+-+.. .|-.++..+..++|..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3456788888884322 2443444444444442 11 1111222222222 3467888889999999999999999
Q ss_pred hhhHHHHHHhh-cCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 047408 387 GKDVHDYIKEN-DMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 387 a~~~~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 429 (830)
-.+++...... +...|...|..+|+.-.+.|+..-..++.++-
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 99999888776 67889999999999999999999888887653
No 396
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.91 E-value=1.8e+02 Score=28.77 Aligned_cols=93 Identities=20% Similarity=0.300 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---HH--HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV---SF--ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA 599 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~---t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 599 (830)
.-.|.||--|..+..+.+|.+.|.. +.|++|... ++ ..-+......|++++|.+...+...+ -+.-+.+.+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 3455666666655555666665543 344555221 22 22334456677777777776665422 2222322222
Q ss_pred HHHH----HHHhcCCHHHHHHHHHh
Q 047408 600 CMVD----LLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 600 ~lv~----~l~r~g~~~eA~~~~~~ 620 (830)
-|.. =+.|.|..++|+++.+.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1111 24588889999998876
No 397
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.60 E-value=39 Score=34.52 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 605 LSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..+.|+.++|..+|+.. .+.|+ +.+..-+..-.-.+++.-+|-..+-+++.++|.|..+.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34788899998888764 55564 3444444444556678888999999999999988776553
No 398
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=41.38 E-value=7.8e+02 Score=30.47 Aligned_cols=240 Identities=11% Similarity=-0.028 Sum_probs=113.3
Q ss_pred HHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCC
Q 047408 322 IRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQS 401 (830)
Q Consensus 322 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 401 (830)
..+...+..+|...--.-+..+.+.+. .+++..+..+.. .+|...-...+.++...+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 355555667777777777777777765 445555555553 234333344455554443221222333333332 5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIH 481 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 481 (830)
|..+....++.+...+.-+ ...+...+..+|. ..-...+.++...+..+.
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~------------------------~VR~~Av~aL~~~~~~~~----- 746 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDH------------------------RVRIEAVRALVSVDDVES----- 746 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCH------------------------HHHHHHHHHHhcccCcHH-----
Confidence 6677777777776654221 2233343433332 222222333333322211
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCCHHH-HHH-HhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047408 482 GYILRHGISADRNVANAIVDMYVKCGVLVL-ARS-LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE 559 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~-A~~-~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 559 (830)
+...--.++..+-...+..++..+..+. +.. +..-+..+|...-.+.+.++...|....+...+..+++ .||.
T Consensus 747 --l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~ 821 (897)
T PRK13800 747 --VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAW 821 (897)
T ss_pred --HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCCh
Confidence 1111124455555555556655554332 222 22333455666666666667766665544444444443 3444
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 047408 560 VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT 608 (830)
Q Consensus 560 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 608 (830)
..=...+.++...+. +++...+..+.+ .|+...-...+.+|++.
T Consensus 822 ~VR~~Aa~aL~~l~~-~~a~~~L~~~L~----D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 822 QVRQGAARALAGAAA-DVAVPALVEALT----DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHhccc-cchHHHHHHHhc----CCCHHHHHHHHHHHhcc
Confidence 444445555555543 234444333332 23444444445555553
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.35 E-value=55 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchH---HHHHHHHhhhcCHHHHHHH
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYY---VLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~---~~l~~~y~~~g~~~~A~~~ 683 (830)
..++.+.|...++++++..++.+.-+ -.|+.+|+..|++.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888887776655544 3456667788888877665
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.15 E-value=66 Score=26.80 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=35.3
Q ss_pred HhcCCHHHHHHHHHHHhccCCCC---------cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDN---------TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~---------~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
...||+..|...+.+.++..... ......++.++...|++++|.+.+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45677777877777666543221 1234567888999999999998877664
No 401
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.99 E-value=51 Score=23.10 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC
Q 047408 238 MISGYIANGVAEKGLEVFKEMLNLG 262 (830)
Q Consensus 238 li~~~~~~g~~~~A~~l~~~m~~~g 262 (830)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678888899999999998888654
No 402
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.68 E-value=2.1e+02 Score=23.67 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHhhhcCH-HHHHHHHHHHH
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN--TGYYVLLANVYAEAEKW-EEVKKLREKIS 688 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~-~~A~~~~~~m~ 688 (830)
|....-.|...+...|+++.|...+-.+++.+|+. ...-..|..++...|.- .-+.+.|++|-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45666777788899999999999999999887764 66778888888888874 46666776654
No 403
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=40.67 E-value=4.3e+02 Score=27.29 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHH-CCCCCChhhHHHHHHHHhc-CC-ChHHHHHHHHHHHHh-CCCCCchHHHHHHHHhhcCCChHH
Q 047408 245 NGVAEKGLEVFKEMLN-LGFNVDLATMVTVLSGCAN-CG-ALMFGRAVHAFALKA-CFSKEISFNNTLLDMYSKCGDLDG 320 (830)
Q Consensus 245 ~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~-~~-~~~~~~~l~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~ 320 (830)
+....+|+.+|+...- ..+--|......+|+.... .+ .+..--++..++... |-.++..+....+..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3344566666653222 2344455566666665543 11 333334444454432 345566666778888888888888
Q ss_pred HHHHHhhcC-----CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 047408 321 AIRVFEKMG-----ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREG 363 (830)
Q Consensus 321 A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 363 (830)
-.++++.-. ..|...|..+|..-.++|+.. +.+++...|
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~----~~~kiI~~G 264 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE----VMRKIIDDG 264 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH----HHHHHhhCC
Confidence 888887643 247888999999998888854 445555555
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.80 E-value=53 Score=32.31 Aligned_cols=58 Identities=26% Similarity=0.318 Sum_probs=44.3
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
++.+.|+-+-|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345677777788887776 4444 467788888777888899999999999998888763
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.32 E-value=2.9e+02 Score=28.33 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=56.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH-
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQ--AGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLS- 606 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~--~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~- 606 (830)
=|.+++..+++.+++...-+--+ +.+.|...-...+ -|++.|......++-..-.+. .-+-+..-|..++.+|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHH
Confidence 36788888888888776544432 2244544444333 367888887777776665543 12223444888777765
Q ss_pred ----hcCCHHHHHHHHHhC
Q 047408 607 ----RTGNLSEAYRFIEMM 621 (830)
Q Consensus 607 ----r~g~~~eA~~~~~~m 621 (830)
=.|.++||++++..-
T Consensus 166 ~VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHHhccccHHHHHHHHhcC
Confidence 469999999998544
No 406
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.60 E-value=1.7e+02 Score=29.29 Aligned_cols=88 Identities=19% Similarity=0.109 Sum_probs=63.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC---------CCCCCHHHHHH-------HH----HHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 602 VDLLSRTGNLSEAYRFIEMM---------PVAPDATIWGS-------LL----CGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m---------~~~p~~~~~~~-------ll----~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.+-+.+.|+++||..-+++. .-+|...-|.- |+ ..+...|++-+++.....++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34566777777777666543 34555544532 22 223456788888888889999999999
Q ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 662 GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 662 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+|..-+...+..=+.++|.+-+....+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999999988888888888887776654
No 407
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=38.49 E-value=53 Score=24.35 Aligned_cols=35 Identities=34% Similarity=0.481 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCC
Q 047408 722 KIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLP 776 (830)
Q Consensus 722 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~ 776 (830)
.+...+++|..++++.|-. .|+|+|+.-...+.+|
T Consensus 4 ~al~~lerlq~KL~~rGd~--------------------s~~e~L~~l~~~LqSP 38 (58)
T PF09045_consen 4 RALQALERLQAKLKERGDT--------------------SHSEKLSLLKDTLQSP 38 (58)
T ss_dssp HHHHHHHHHHHHHHHCT----------------------TTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHccCc--------------------ccHHHHHHHHHHHhCh
Confidence 4566789999999999953 3888888877766554
No 408
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=38.43 E-value=7.7 Score=36.88 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=8.2
Q ss_pred cccccccccc
Q 047408 786 NLRVCGDCHE 795 (830)
Q Consensus 786 nlr~c~dch~ 795 (830)
||..|.-||.
T Consensus 180 nlk~Cn~Ch~ 189 (235)
T KOG4718|consen 180 NLKNCNLCHC 189 (235)
T ss_pred HHHHHhHhHH
Confidence 7888888886
No 409
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=37.22 E-value=44 Score=29.95 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=51.1
Q ss_pred EEEECCEEEEEEeCC-cCCCChhHHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCCCC
Q 047408 700 WIEIKGKVNIFVAGG-SSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAG 778 (830)
Q Consensus 700 wi~~~~~~~~f~~~~-~~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~~~ 778 (830)
|+.-.+..-.|..|| ..+|++..+-..|++|.+++.. + +..+.-.|+++ .+.||.-||+.+.|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~---~v~~akVDiD~----------~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-Y---TWQVAIADLEQ----------SEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-C---ceEEEEEECCC----------CHHHHHHcCCccCC--
Confidence 333344445689998 5789999999999999987631 1 12345556654 46789999999998
Q ss_pred CeEEEEecccc
Q 047408 779 QTIRVTKNLRV 789 (830)
Q Consensus 779 ~~~~~~knlr~ 789 (830)
++-++||=+.
T Consensus 94 -TLl~FkdGk~ 103 (132)
T PRK11509 94 -ATLVFTGGNY 103 (132)
T ss_pred -EEEEEECCEE
Confidence 6777777543
No 410
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=36.79 E-value=13 Score=27.37 Aligned_cols=11 Identities=36% Similarity=1.102 Sum_probs=8.5
Q ss_pred ccccccccchh
Q 047408 787 LRVCGDCHEMA 797 (830)
Q Consensus 787 lr~c~dch~~~ 797 (830)
.-||+|||+--
T Consensus 20 iYiCgdC~~en 30 (62)
T KOG3507|consen 20 IYICGDCGQEN 30 (62)
T ss_pred EEEeccccccc
Confidence 46899999743
No 411
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=36.72 E-value=8.1e+02 Score=29.29 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=38.6
Q ss_pred HhcCCHHHHHHHhhhCCCCC---hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 504 VKCGVLVLARSLFDMIPAKD---LI-SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 504 ~k~g~~~~A~~~f~~m~~~d---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
.-+++++.|+.+++.+...+ +. .|-..+..-..+|+...+..+++.....-..|+..
T Consensus 473 sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~ 533 (881)
T KOG0128|consen 473 SLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDA 533 (881)
T ss_pred HHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhH
Confidence 34678888888888877443 33 45556666667788888888777776655555543
No 412
>PRK10941 hypothetical protein; Provisional
Probab=36.67 E-value=1.7e+02 Score=30.03 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+.+-..|.+.++++.|+...+.+ .+.|+ +.-|.--.-.+.+-|....|..-++.-++.-|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34455667777777777777776 44553 4556666666778888888888888888888877644
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.43 E-value=90 Score=30.16 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 622 PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 622 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
...|++.++..++.++...|+.++|+...+++..+-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888888888887777
No 414
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.93 E-value=1.1e+02 Score=32.35 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHH---HhccCCCCcchHHHHHHHHhhhcC-HHHHHHHHHHHHhCCCcCCCceeEEEECCE
Q 047408 640 HHEVKLAEKVAEH---VFELEPDNTGYYVLLANVYAEAEK-WEEVKKLREKISRRGLKKNPGCSWIEIKGK 706 (830)
Q Consensus 640 ~g~~~~a~~~~~~---~~~l~p~~~~~~~~l~~~y~~~g~-~~~A~~~~~~m~~~g~~~~~~~swi~~~~~ 706 (830)
|=|+..|..+++. .+.++|.|. |+ .+...++.+..+++|+.-..|.-|..+...
T Consensus 88 HFd~~lAl~a~~~G~~~iRINPGNi-------------g~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~ 145 (360)
T PRK00366 88 HFDYRLALAAAEAGADALRINPGNI-------------GKRDERVREVVEAAKDYGIPIRIGVNAGSLEKD 145 (360)
T ss_pred CCCHHHHHHHHHhCCCEEEECCCCC-------------CchHHHHHHHHHHHHHCCCCEEEecCCccChHH
Confidence 5578888888886 357889875 66 778888999999999988888777655433
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.87 E-value=45 Score=29.80 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=25.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 047408 344 AREGVFDGAIRLFRGMVREGIEPDVYAITSILHAC 378 (830)
Q Consensus 344 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 378 (830)
-..|.-.+|..+|++|++.|-+||. +..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446777899999999999999985 56666554
No 416
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.68 E-value=6.6e+02 Score=28.00 Aligned_cols=217 Identities=17% Similarity=0.110 Sum_probs=117.6
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHH--hhhC----CCC-----------ChhhHHHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSL--FDMI----PAK-----------DLISWTIMIA 532 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~--f~~m----~~~-----------d~~~~~~li~ 532 (830)
..+.++...+....+...|.....+.+|.-+..|.|.|....-..+ ++.+ ..+ +.+.+-....
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 3466778888888888888888788888888888888865432211 1111 111 1223333444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC------hhHHHHHHHHHHccCCHHHHHHHHH---HhHhhcCCCCCc--chHHHH
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPD------EVSFISVLYACSHSGLVDEGWRFFN---MMRYECNIEPKL--EHYACM 601 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd------~~t~~~ll~a~~~~g~~~~a~~~~~---~m~~~~~~~p~~--~~y~~l 601 (830)
+|..+..+.+|+++-...... +.|= .+|+..++ -+......++|+.+.+ .|...-...|.. ..-+.
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~-l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn- 185 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDL-LAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANN- 185 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhh-
Confidence 566667777788776666542 2222 22332222 1233344566655544 333322223321 11111
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 602 VDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
..+.+....|+.-+-... |...+-.--+.++.+..++..+.+-.+.+....-+.+.+..+-++.+...|++..|.
T Consensus 186 ---~~kt~s~~aAe~s~~~a~--~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~ 260 (696)
T KOG2471|consen 186 ---LLKTLSPSAAERSFSTAD--LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAM 260 (696)
T ss_pred ---hcccCCcchhcccchhhc--cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHH
Confidence 112222223322221111 111111122344555566777777777777676677777788899999999999999
Q ss_pred HHHHHHHhCCCcCCCc
Q 047408 682 KLREKISRRGLKKNPG 697 (830)
Q Consensus 682 ~~~~~m~~~g~~~~~~ 697 (830)
+++ ...|+.+++|
T Consensus 261 KlL---~~sni~~~~g 273 (696)
T KOG2471|consen 261 KLL---LVSNIHKEAG 273 (696)
T ss_pred HHH---HhcccccccC
Confidence 874 3456666665
No 417
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.67 E-value=3.1e+02 Score=26.46 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=32.7
Q ss_pred HHHhcCCHHHHHHHhhhCC------CCChhhHHHHHH-HHHhcCC--hHHHHHHHHHHHHc
Q 047408 502 MYVKCGVLVLARSLFDMIP------AKDLISWTIMIA-GYGMHGF--GCDAIATFNDMRQA 553 (830)
Q Consensus 502 ~y~k~g~~~~A~~~f~~m~------~~d~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 553 (830)
.....|++++|..-++.+. ++-...|+.+.. |++.++. +-+|.-+|.-....
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3455677888888877664 224456666665 6777765 55666666655543
No 418
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.74 E-value=3.6e+02 Score=24.68 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=43.7
Q ss_pred HHHhCCCCch--hHHhHHHHHHHhcCCHHHHHHHhhhCC---------CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 047408 484 ILRHGISADR--NVANAIVDMYVKCGVLVLARSLFDMIP---------AKDLISWTIMIAGYGMHGF-GCDAIATFNDMR 551 (830)
Q Consensus 484 ~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~~m~---------~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~ 551 (830)
+.+.+..++. ...|+++.-.+.-+++.-...+++.+. ..+-.+|.+++.+.++..- ---+..+|+-|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3334444432 234555555455555555444444432 1233455555555544433 233455556665
Q ss_pred HcCCCCChhHHHHHHHHHHcc
Q 047408 552 QAGIEPDEVSFISVLYACSHS 572 (830)
Q Consensus 552 ~~g~~Pd~~t~~~ll~a~~~~ 572 (830)
+.+.+++..-|..++.+|.+.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 555555555566666555543
No 419
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.47 E-value=2.2e+02 Score=23.48 Aligned_cols=39 Identities=15% Similarity=-0.027 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHH
Q 047408 505 KCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 544 (830)
+.|+.+.|+++++.++ +..-.|...+.++...|+.+-|-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 66667777777777666655443
No 420
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.97 E-value=7.9e+02 Score=28.36 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh-cCCHHHHHHHhhhCCCC-ChhhHHHHHH----HHHhcCChHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVK-CGVLVLARSLFDMIPAK-DLISWTIMIA----GYGMHGFGCDAIAT 546 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-~g~~~~A~~~f~~m~~~-d~~~~~~li~----~~~~~g~~~~A~~l 546 (830)
+.+.|..++....+.|. |+....-..+..... -.+...|.+.|...... .+.+.-.+.. |.....+.+.|..+
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 55667777777777763 333333222222222 23566777777765432 2222211111 11233457777777
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH-----HHh--cCCHHHHHHHHH
Q 047408 547 FNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL-----LSR--TGNLSEAYRFIE 619 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~-----l~r--~g~~~eA~~~~~ 619 (830)
|++.-+.| .|-..--...+..+.. +.++.+.-.+..+. ..|.+-....-..+.+. ..+ ..+.+.+..++.
T Consensus 387 ~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 387 YKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHH
Confidence 77777776 3333323333344444 55555544444433 11222111111111111 111 224555666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----hcCHHHHHHHHHHHHh
Q 047408 620 MMPVAPDATIWGSLLCGCRIH----HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE----AEKWEEVKKLREKISR 689 (830)
Q Consensus 620 ~m~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~ 689 (830)
+...+-+......|...+..- .+.+.|...+.++.+.. +.....|+.+|-. .. +..|.+++....+
T Consensus 464 ~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 464 RAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred HHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 654444444444444443222 25666766666665544 4455566666543 23 6677777666554
No 421
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=33.85 E-value=68 Score=32.89 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=40.4
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.++.|+.|.|..+++.++.+.|+++.+..-++.......+.-+|...+-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 5778999999999999999999999888888777666666666666543
No 422
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=33.63 E-value=15 Score=28.04 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=16.1
Q ss_pred ceEEEecCCccccccCcccc
Q 047408 806 REIVLRDSNRFHHFKDGRCS 825 (830)
Q Consensus 806 r~i~~rd~~rfh~f~~g~cs 825 (830)
..|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45778999999999999864
No 423
>PRK14015 pepN aminopeptidase N; Provisional
Probab=33.18 E-value=4.7e+02 Score=32.09 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=68.5
Q ss_pred HHHHHHHHHccCC--HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 047408 562 FISVLYACSHSGL--VDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMPVAP-DATIWGSLLCGC 637 (830)
Q Consensus 562 ~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~ 637 (830)
-.+.|+++.+.+. -+++++-|. +++.-.|- ..-|-.+.-.-.+.+-++...++.+.-.+.+ ++--.++|++++
T Consensus 717 ~~~al~~l~~~~~~~~~~~l~~f~---~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f 793 (875)
T PRK14015 717 RLAALSALVNADLPERDEALADFY---DRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAF 793 (875)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHH---HHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHH
Confidence 3445555555443 233444443 34444443 2334444333333334445455544433333 334568899888
Q ss_pred HhcCCH------HHHHH-HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 638 RIHHEV------KLAEK-VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 638 ~~~g~~------~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
...+.. ..|.+ +++.++++++-||..-..|+..+.+-.++++..+.
T Consensus 794 ~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 794 AAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred hhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 544422 34444 56788899999999989999999988888876653
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.62 E-value=1.3e+02 Score=21.38 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=25.9
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLS 275 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 275 (830)
..+.|...++..++++|.+.|+..+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4467777788888888888888877777766654
No 425
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.56 E-value=2e+02 Score=23.68 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 047408 115 GKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESL 183 (830)
Q Consensus 115 a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 183 (830)
+..+++...+.|+... .-.+.+-..-.+.|+.+.|+++.+.++ +..-.|..+++++-..|.-.-|-
T Consensus 21 ~~~v~d~ll~~~ilT~--~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLTE--EDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3456666666664432 112222222225578888888888888 77778888888888877755443
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.19 E-value=1.2e+02 Score=29.34 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=16.3
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 555 IEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 555 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..|+..+|..++.++...|+.++|.+...++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555555555555555555555444
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.19 E-value=72 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 047408 234 SWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVL 274 (830)
Q Consensus 234 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 274 (830)
-||..|..-++.|++++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36799999999999999999999999999876666664443
No 428
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.79 E-value=76 Score=32.75 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL 566 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 566 (830)
-||..|..-.+.|+.++|+.|++|..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46789999999999999999999999999877666776544
No 429
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=31.65 E-value=7.8e+02 Score=27.60 Aligned_cols=84 Identities=7% Similarity=-0.046 Sum_probs=57.0
Q ss_pred hhccCCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCC-hhhHHHHHHH-HhccCChhHHHHHHHHHHHhCCCCCccc
Q 047408 56 SKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKID-TKTYCSILQL-CADLKSLEDGKKVHSIICESGIVIDDGV 133 (830)
Q Consensus 56 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 133 (830)
+...+.|+..|..-|.-+-+.+.+.+.-.+|..|....|+ |+.|.....- +-...+++.|++++...++.+ |+++.
T Consensus 98 t~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n--pdsp~ 175 (568)
T KOG2396|consen 98 TNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN--PDSPK 175 (568)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC--CCChH
Confidence 3334558899998888777777799999999999887664 3444443332 333345888999988887754 55456
Q ss_pred hHHHHHHH
Q 047408 134 LGSKLVFM 141 (830)
Q Consensus 134 ~~~~li~~ 141 (830)
+|-...++
T Consensus 176 Lw~eyfrm 183 (568)
T KOG2396|consen 176 LWKEYFRM 183 (568)
T ss_pred HHHHHHHH
Confidence 66555444
No 430
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.49 E-value=5e+02 Score=25.03 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred hhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhc-------
Q 047408 326 EKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEND------- 398 (830)
Q Consensus 326 ~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g------- 398 (830)
.+-.++-.+.|..+...-++.-+.+++-+.|-- .+=.+++-.|-+..++.+|+.+++.+-+..
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 333445556677676666666555554443321 112456667777778888888888775532
Q ss_pred -------CCCchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 399 -------MQSSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 399 -------~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
..+.-.+.|.-...+.++|.+|-|..++++
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 234456788889999999999999999975
No 431
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.43 E-value=7.5e+02 Score=27.01 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=38.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCch--HHHHHHHHhhcCCC
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDLAT--MVTVLSGCANCGALMFGRAVHAFALKACFSKEIS--FNNTLLDMYSKCGD 317 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~--~~~~Li~~y~k~g~ 317 (830)
.++.|+.+ +++.+.+.|..|+... ..+.|..++..|+.+ +...+++.|..++.. -..+.+...++.|+
T Consensus 9 A~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34455553 3444556677776532 233444444555554 334444555444322 11233444555666
Q ss_pred hHHHHHHHhh
Q 047408 318 LDGAIRVFEK 327 (830)
Q Consensus 318 ~~~A~~~f~~ 327 (830)
.+.+..+++.
T Consensus 81 ~~~v~~Ll~~ 90 (413)
T PHA02875 81 VKAVEELLDL 90 (413)
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 432
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.38 E-value=6.5e+02 Score=26.28 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=16.4
Q ss_pred CHHHHHHHHhhC-C-CCCcchHHHHHHHHH
Q 047408 216 RVKDAHKLFDEL-S-DRDVVSWNCMISGYI 243 (830)
Q Consensus 216 ~~~~A~~lf~~m-~-~~~~~~~n~li~~~~ 243 (830)
....+.++...+ + +++...|..++..+.
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~ 84 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLS 84 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 366677777766 3 567777777665543
No 433
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.34 E-value=2.6e+02 Score=24.85 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 543 AIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 543 A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
..+-++....-.+-|+....-.-|.||.+.+++..|.++|+..+.+ ..+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3444555566678899999999999999999999999999998754 334344566655
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.97 E-value=4.3e+02 Score=26.53 Aligned_cols=117 Identities=11% Similarity=-0.100 Sum_probs=66.0
Q ss_pred HHhcCCHHHHHHHhhhCC--CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHH
Q 047408 503 YVKCGVLVLARSLFDMIP--AKDL-ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEG 578 (830)
Q Consensus 503 y~k~g~~~~A~~~f~~m~--~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a 578 (830)
|-...+++.|...+.+.. .|++ .-|+.=+..+.+..+++.+.+=-++.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 344456677777666543 5555 3456667777778888888777777666 6787774 33344455666667777
Q ss_pred HHHHHHhH---hhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 579 WRFFNMMR---YECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 579 ~~~~~~m~---~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+..+.+.. ....+.|.......|-++=-..-...++..+.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77666542 22233444444444444433333333444444433
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.79 E-value=1.2e+02 Score=21.59 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=29.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 047408 171 HEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKC 207 (830)
Q Consensus 171 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 207 (830)
.-..+.|-..++..++++|.+.|+.-+...|..+++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3345778888999999999999988888877777653
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.56 E-value=3.5e+02 Score=24.02 Aligned_cols=45 Identities=11% Similarity=0.272 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhc
Q 047408 113 EDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNK 157 (830)
Q Consensus 113 ~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 157 (830)
+.+..++..|...|+...-...|......+.+.|++.+|.++|..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 378889999988888776566777777888888888888888763
No 437
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=29.38 E-value=1.1e+02 Score=32.88 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKK 682 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~ 682 (830)
.|...++.+.|..-..+-+-++|.....+..-+-++-...||.+|.+
T Consensus 237 CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 237 CYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555544
No 438
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.91 E-value=6.5e+02 Score=25.84 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc---------------CHHHHHHHHHHHHhCC
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE---------------KWEEVKKLREKISRRG 691 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------------~~~~A~~~~~~m~~~g 691 (830)
|.++|...++++-+... ......++ ++...| ++..|...+......|
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 77888888888877766 44555555 555555 5556666655555443
No 439
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.75 E-value=1.5e+03 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=18.9
Q ss_pred CCccccc--cchhhhcchhhHHHHHHHHHHHHH
Q 047408 456 PDGVTMA--CILPACASLAALERGREIHGYILR 486 (830)
Q Consensus 456 pd~~t~~--~ll~a~~~~~~~~~a~~i~~~~~~ 486 (830)
|+.++.. .++.+..+.-.+.+|.+||..+.+
T Consensus 2628 P~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2628 PERVNHGHVPLLQAFQQIVELQEAAQIYSDLND 2660 (3550)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555543 456666666666777777766544
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.71 E-value=78 Score=24.07 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
|..-.-.+|.||.+.|++++|.+..+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344578889999999999988888765
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.40 E-value=1e+02 Score=23.39 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 047408 541 CDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 541 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 587 (830)
++..++++.++. .+=|..--..++.++...|++++|.++.+.+..
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444443 233444556677777788888888887777654
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.13 E-value=5.3e+02 Score=27.98 Aligned_cols=29 Identities=7% Similarity=-0.309 Sum_probs=19.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
.+...+++..|.++|+++.+..+.|+..+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 44566777777777777777655554443
No 443
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.81 E-value=8.9e+02 Score=27.04 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=7.3
Q ss_pred cCCChHHHHHHHhh
Q 047408 314 KCGDLDGAIRVFEK 327 (830)
Q Consensus 314 k~g~~~~A~~~f~~ 327 (830)
+.|+.+-...+++.
T Consensus 117 ~~~~~~iv~~Ll~~ 130 (480)
T PHA03100 117 KSNSYSIVEYLLDN 130 (480)
T ss_pred ccChHHHHHHHHHc
Confidence 55555555555543
No 444
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.55 E-value=2e+02 Score=23.56 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 047408 116 KKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKES 182 (830)
Q Consensus 116 ~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 182 (830)
..+.+.+.+.|+..+ .-.-...+...+.+.|.++.+.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~-----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP-----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH-----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346666666664322 22223334445677888888888888888888888888777765443
No 445
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=26.67 E-value=12 Score=29.34 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=10.9
Q ss_pred ecccccccccchhh
Q 047408 785 KNLRVCGDCHEMAK 798 (830)
Q Consensus 785 knlr~c~dch~~~k 798 (830)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 44699999998753
No 446
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=26.50 E-value=1.1e+03 Score=27.58 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=34.9
Q ss_pred cHHHHHHHHHhcCCCCCHHHHHHHHhhCCCC--CcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047408 200 TFSCVLKCLAVVGNSRRVKDAHKLFDELSDR--DVVSWNCMISGYIANGVAEKGLEVFKEMLN 260 (830)
Q Consensus 200 t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~--~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 260 (830)
.|..|+..+.... .++-.+++.++... ....|+.+++++...|-.....-+.+.+..
T Consensus 348 ~f~~Lv~~lr~l~----~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~ 406 (618)
T PF01347_consen 348 KFSRLVRLLRTLS----YEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKS 406 (618)
T ss_dssp HHHHHHHHHTTS-----HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 4666666665443 67777777776655 667888888888888776544444444433
No 447
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=26.30 E-value=38 Score=21.83 Aligned_cols=10 Identities=70% Similarity=0.999 Sum_probs=8.4
Q ss_pred HHHHHHHhhc
Q 047408 765 KLAMAFGILN 774 (830)
Q Consensus 765 ~la~a~~~~~ 774 (830)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 5899999986
No 448
>PF14376 Haem_bd: Haem-binding domain
Probab=26.20 E-value=24 Score=32.03 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=7.4
Q ss_pred ccccccccc
Q 047408 787 LRVCGDCHE 795 (830)
Q Consensus 787 lr~c~dch~ 795 (830)
-+-|.||||
T Consensus 41 ~~~CydCHS 49 (137)
T PF14376_consen 41 KNSCYDCHS 49 (137)
T ss_pred HccccccCC
Confidence 357999997
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.97 E-value=9.2e+02 Score=29.12 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhCCCC-------chhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047408 477 GREIHGYILRHGISA-------DRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFND 549 (830)
Q Consensus 477 a~~i~~~~~~~g~~~-------~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 549 (830)
|..+..++.+.|++- |.. .-......||+++.|.+.-..+. |...|..|...-..+|+.+-|...|++
T Consensus 623 GqaiIaYLqKkgypeiAL~FVkD~~---tRF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~ 697 (1202)
T KOG0292|consen 623 GQAIIAYLQKKGYPEIALHFVKDER---TRFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQR 697 (1202)
T ss_pred cHHHHHHHHhcCCcceeeeeecCcc---hheeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 455666777777542 222 22345567899999988876665 556899999999999999999999988
Q ss_pred HHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 047408 550 MRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDAT 628 (830)
Q Consensus 550 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~ 628 (830)
... |..|-.-|.-.|+.++-.++......+ -|. .+|. ..+ -.|++++=.++++..+..|-+
T Consensus 698 ~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~~~~~q--nal--Yl~dv~ervkIl~n~g~~~la- 759 (1202)
T KOG0292|consen 698 TKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDATGQFQ--NAL--YLGDVKERVKILENGGQLPLA- 759 (1202)
T ss_pred hhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhhHHHHH--HHH--HhccHHHHHHHHHhcCcccHH-
Confidence 764 222323344567777776665554322 121 1111 111 258888888888887644322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFE 655 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 655 (830)
|. .-..||.-++|+++.+++-.
T Consensus 760 -yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 760 -YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -HH----HHhhcCcHHHHHHHHHhhcc
Confidence 22 12568989999998887754
No 450
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.76 E-value=1.2e+02 Score=31.19 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=44.4
Q ss_pred HHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 047408 371 ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 371 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 429 (830)
+..+.++|...|.+.+|.++++..++.. +.+...+-.|+..|+..|+--.|.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4445667788888888888888887776 667778888899999999877776666655
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.52 E-value=1.3e+03 Score=28.20 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=28.5
Q ss_pred hHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047408 318 LDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVR 361 (830)
Q Consensus 318 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 361 (830)
+++...++.+-+ -|..|+.-|...|+.++|++++++...
T Consensus 494 vee~e~~L~k~~-----~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 494 VEEIETVLKKSK-----KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred hHHHHHHHHhcc-----cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 444444444432 478889999999999999999988865
No 452
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.26 E-value=1.9e+02 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccC
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~ 657 (830)
.+.......|+.++|...+++++++-
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444667788888888887777653
No 453
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=25.24 E-value=3.9e+02 Score=23.03 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=50.7
Q ss_pred cCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 047408 109 LKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKK 188 (830)
Q Consensus 109 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 188 (830)
....++|..+.+.+...+-. . ..+.-..+..+.+.|+++.|...=.....||...|-+|-. .+.|...++...+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~-~-E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM-E-EVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT-H-HHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH-H-HHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34577888888888776531 1 2333334445778899999966666677888888887743 467777777777777
Q ss_pred HHHcC
Q 047408 189 MQSLG 193 (830)
Q Consensus 189 m~~~g 193 (830)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 66554
No 454
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=25.05 E-value=6.8e+02 Score=24.79 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHH
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACM 601 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~l 601 (830)
.+.-|+.+.+.+...+|+.+.++-++. +|... +-..++.-++-.|++++|..-++... .+.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 344566667777777777777776663 45444 34445566777777777776655443 23332 3444444
Q ss_pred HHHHHhcCCHHHHH-HHHHhC--CC---CCCHHHHH-HHHHHHH--hcCCHHHHHHHHHHHhccCCCCcch
Q 047408 602 VDLLSRTGNLSEAY-RFIEMM--PV---APDATIWG-SLLCGCR--IHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 602 v~~l~r~g~~~eA~-~~~~~m--~~---~p~~~~~~-~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
|+. +.+. ++|..- |. .|. ..|- +|+.+.. ..|.-+....+-+.+++-.|..++.
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~-p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPS-PEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCC-HHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 432 2222 223221 21 122 3444 4444433 3334555566667777777765543
No 455
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.01 E-value=4.2e+02 Score=24.03 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.-+|.+.|+++++++..+.+++.+|+|.
T Consensus 78 Avg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 78 AVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3467888999999999999999999874
No 456
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=24.97 E-value=68 Score=28.70 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=26.1
Q ss_pred HHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 047408 73 FCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLC 106 (830)
Q Consensus 73 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~ 106 (830)
...-|.-.+|-.+|.+|+..|-.|+.++.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDDWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCccHHHHHHHh
Confidence 3445666778888888888888888888888765
No 457
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=24.60 E-value=3.5e+02 Score=23.85 Aligned_cols=19 Identities=21% Similarity=-0.031 Sum_probs=12.6
Q ss_pred HHHHhhhcCHHHHHHHHHH
Q 047408 668 ANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~ 686 (830)
+-.+...|+.+||.+.++.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 4456667888888877764
No 458
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=24.38 E-value=6.1e+02 Score=28.95 Aligned_cols=131 Identities=15% Similarity=0.032 Sum_probs=86.4
Q ss_pred CCCChhHHHHHHHHHHccC--CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHhC-CCCCC--HH
Q 047408 555 IEPDEVSFISVLYACSHSG--LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR-TGNLSEAYRFIEMM-PVAPD--AT 628 (830)
Q Consensus 555 ~~Pd~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~g~~~eA~~~~~~m-~~~p~--~~ 628 (830)
-.|+..|.-.++.-...-- .-+-|-.+|..|. +.+.|--...| +..+|-| .|+...|.+.+... ..+|. .+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~--~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN--KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc--CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 4577777666665444322 2344666666664 24555322222 2334443 68888998877765 33332 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
..-.|.....+.|-.-.|-.++.+.+.+.-..|-.+..++++|....+.+.|.+.++...
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 344566666777777888888888888887778888999999999999999998877654
No 459
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=24.32 E-value=3e+02 Score=29.38 Aligned_cols=84 Identities=14% Similarity=0.236 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCC--Chh
Q 047408 644 KLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHP--HAK 721 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p--~~~ 721 (830)
|..+.++.++--.+|+|+.....+ +|.+++++++++|-..+. ..++|+.... -..
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~GedveV------------A~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGEDVEV------------AVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCCCeEE------------EEEECCCCCchhhHH
Confidence 344556667777899999887766 788999999988763322 3566765432 234
Q ss_pred HHHHHHHHHHHHHHHcCccCCCCccccccchhhh
Q 047408 722 KIESLLKRLRLEMKREGYFPKTRYALINADEMEK 755 (830)
Q Consensus 722 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 755 (830)
+|-+.|+++.+ .|.||.-.+..|=.|+|+
T Consensus 85 ~I~~qld~vl~-----~~~~~~~i~VsDGaeDE~ 113 (344)
T PF04123_consen 85 KIAEQLDEVLS-----KFDPDSAIVVSDGAEDER 113 (344)
T ss_pred HHHHHHHHHHH-----hCCCCEEEEEecChhhhh
Confidence 45555554443 456775555556555443
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.22 E-value=3.5e+02 Score=31.65 Aligned_cols=27 Identities=15% Similarity=-0.075 Sum_probs=22.1
Q ss_pred ccccccchhhhhhccccceEEEecCCc
Q 047408 789 VCGDCHEMAKFMSKTARREIVLRDSNR 815 (830)
Q Consensus 789 ~c~dch~~~k~~s~~~~r~i~~rd~~r 815 (830)
.|..=|.+.=-.|+|-|-.+--||.++
T Consensus 490 ~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 490 KLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhcCceeeeeehhceecccccccccce
Confidence 477778888888889998899998775
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.95 E-value=2.7e+02 Score=26.63 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.+..|...|.+++|.+++++.++ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 35568999999999999999988 7776543
No 462
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.93 E-value=2.2e+02 Score=26.86 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCH
Q 047408 538 GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLV 575 (830)
Q Consensus 538 g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~ 575 (830)
+..-.|.++++++.+.+..++..|....|..+...|.+
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33444555555555555555555544444444444443
No 463
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.82 E-value=4.6e+02 Score=22.38 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=39.2
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccC--ChhHHHHHHHHHHHhC
Q 047408 66 YNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLK--SLEDGKKVHSIICESG 126 (830)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g 126 (830)
...+|..|...+++++|..-+.++......+.....++..+...+ .-+....+...+.+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 345778889999999999999887654444445556666665543 2333444555555554
No 464
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=23.77 E-value=30 Score=19.53 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=5.9
Q ss_pred ccchhhhhh
Q 047408 793 CHEMAKFMS 801 (830)
Q Consensus 793 ch~~~k~~s 801 (830)
-|.++|+||
T Consensus 12 lhe~ikli~ 20 (23)
T PF08225_consen 12 LHEVIKLIN 20 (23)
T ss_pred HHHHHHHHh
Confidence 466777666
No 465
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=23.41 E-value=3.1e+02 Score=24.41 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 613 EAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 613 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
+++.-.-.+.+-|++.+..+-|.||++-+|+..|.+++|-+...
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33433344577899999999999999999999999999977543
No 466
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=23.07 E-value=24 Score=29.41 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=9.0
Q ss_pred ccCccccCCCC
Q 047408 819 FKDGRCSCRGF 829 (830)
Q Consensus 819 f~~g~csc~d~ 829 (830)
-..|-|||.||
T Consensus 47 l~~gfCSCp~~ 57 (117)
T COG5431 47 LEGGFCSCPDF 57 (117)
T ss_pred EEcCcccCHHH
Confidence 46789999886
No 467
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=23.06 E-value=47 Score=35.42 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhhcC-CCCCeEE
Q 047408 761 GHSEKLAMAFGILNL-PAGQTIR 782 (830)
Q Consensus 761 ~hse~la~a~~~~~~-~~~~~~~ 782 (830)
.+.=|||+|+++|.+ |||...|
T Consensus 18 l~tsKlAlAlAIIrsKPpg~s~R 40 (375)
T PF13971_consen 18 LKTSKLALALAIIRSKPPGKSSR 40 (375)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHH
Confidence 466799999999955 7786644
No 468
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=23.01 E-value=1.1e+03 Score=29.12 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLS 606 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~ 606 (830)
|..+.-++..+..+......++..+. .|..--.+.|+++.+.+. .+....++....++.-.|- ..-|-.+.-.-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 44444445455443222233333332 122223344555554433 2323333333334444443 233433333222
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------HHHHHH-HHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 607 RTGNLSEAYRFIEMMPVAP-DATIWGSLLCGCRIHHE------VKLAEK-VAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 607 r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~------~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
+.+-++...++.+.-.+.+ ++--.++|++++...+. -..|.+ +.+.+++++|-||..-..|+..+.+-.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 3334444444443333332 33456888888854332 233444 567888999999999999999999888888
Q ss_pred HHHHH
Q 047408 679 EVKKL 683 (830)
Q Consensus 679 ~A~~~ 683 (830)
+..+-
T Consensus 832 ~~r~~ 836 (863)
T TIGR02414 832 PKRQE 836 (863)
T ss_pred HHHHH
Confidence 76653
No 469
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.97 E-value=1e+03 Score=26.00 Aligned_cols=172 Identities=15% Similarity=0.234 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHhhcCC-----C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 047408 305 NNTLLDMYSKCGDLDGAIRVFEKMGE-----R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHAC 378 (830)
Q Consensus 305 ~~~Li~~y~k~g~~~~A~~~f~~m~~-----~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 378 (830)
..-+-+.|..||+++.|.+.+.+... . -+-.|-.+|..-.-.|+|........+..+. |+. .
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~--~------- 220 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA--N------- 220 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--h-------
Confidence 35678889999999999999988543 1 2234555666666667777776666665542 211 0
Q ss_pred hccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCc
Q 047408 379 ACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDG 458 (830)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~ 458 (830)
-..+ ..+.+-...+..|.....+ ++..|.+.|-..... ..-++.+| .|..
T Consensus 221 -----~~~~---------q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~-~~d~~~iv-------------tpsd 270 (466)
T KOG0686|consen 221 -----ENLA---------QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFD-HCDYPEIV-------------TPSD 270 (466)
T ss_pred -----hhHH---------HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCC-ccCcccee-------------cchh
Confidence 0011 1123334445555555544 666666665443321 11122222 3555
Q ss_pred cccccchhhhcchhhHHHHHHHHHH-HHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC
Q 047408 459 VTMACILPACASLAALERGREIHGY-ILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~-~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 520 (830)
++....+.|.+.-+.-+.-+++..- ..+.=++.++.+...|...|. +++....++++++.
T Consensus 271 v~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~--sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 271 VAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFYS--SKYASCLELLREIK 331 (466)
T ss_pred hHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhh--hhHHHHHHHHHHhc
Confidence 5555555555554444333222211 112222344555555555553 45555666666554
No 470
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.14 E-value=1.2e+03 Score=26.56 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCC--Ccc---hHHHHHHHHHhCCChhHHHHHHHHHH
Q 047408 136 SKLVFMFVTCGDLKEGRRVFNKIDNG--KVF---IWNLLMHEYSKTGNFKESLYLFKKMQ 190 (830)
Q Consensus 136 ~~li~~y~~~g~~~~A~~~f~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~ 190 (830)
..|+.-|.+++++++|..++..|.=. ... +.+.+...+.+..--++....++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 46888899999999999999988622 112 22333444444443344444444443
No 471
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=1.2e+03 Score=26.74 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHhHhhcCC---------CC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----------CCCCCHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNI---------EP-KLEHYACMVDLLSRTGNLSEAYRFIEMM----------PVAPDAT 628 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~---------~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----------~~~p~~~ 628 (830)
+.|+..++++..-|......+.. .| .+...-.|.+++-..|+.+-|.+++++. .+.|...
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ----------------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-CcchHHHHHHHHh-hhcCHHHHHHHHHHHHhC
Q 047408 629 ----------------IWGSLLCGCRIHHEVKLAEKVAEHVFELEPD-NTGYYVLLANVYA-EAEKWEEVKKLREKISRR 690 (830)
Q Consensus 629 ----------------~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m~~~ 690 (830)
+.-.-+....+.|-..-|.+..+-++.++|. ||-....++++|+ ++..+.=-.++.+..+..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 047408 691 G 691 (830)
Q Consensus 691 g 691 (830)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 472
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.02 E-value=6.3e+02 Score=24.42 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=13.8
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
..+.|++++|.+.++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456788888888887763
No 473
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.02 E-value=3.6e+02 Score=24.00 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHh
Q 047408 115 GKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFN 156 (830)
Q Consensus 115 a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 156 (830)
...+|..|.+.|+-..-...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677777666554434455555555566666666666664
No 474
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.73 E-value=2.6e+02 Score=24.88 Aligned_cols=68 Identities=13% Similarity=0.307 Sum_probs=44.1
Q ss_pred HHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAPDA---TIWGSLLCGCRIHHEVKLAEKVAEHVFE--LEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+++.+.|... ..+-|+ -+|-..+..| +....+++.+.. +.-..+..|...+..+...|++.+|.++++
T Consensus 50 erc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 50 ERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444443 233444 4566666554 224566776654 445567788999999999999999999875
No 475
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.29 E-value=8.4e+02 Score=24.44 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACS-HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT 608 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 608 (830)
|+..+-+.|+++++++.++++...+...+..--+.+-.||- -.|....+++++..+..+..-..+ .....++.-|-+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45566778888888888888888765555444444444442 234455566666665443222222 2222222222110
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCH-HHHHHHHHHH-H---h--cC-----CHHHHHHHHHHHhc-----cCCCCc
Q 047408 609 ------GNLSEAYRFIEMM--PV--APDA-TIWGSLLCGC-R---I--HH-----EVKLAEKVAEHVFE-----LEPDNT 661 (830)
Q Consensus 609 ------g~~~eA~~~~~~m--~~--~p~~-~~~~~ll~~~-~---~--~g-----~~~~a~~~~~~~~~-----l~p~~~ 661 (830)
.--.+.+++++.. |. .+.. +.|.-+-+=| + . .| -.+.|..+++++++ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1124555666553 21 1222 2222221111 1 0 11 24667777777653 677777
Q ss_pred chHHH---HHH-HHhhhcCHHHHHHHHHHHHhC
Q 047408 662 GYYVL---LAN-VYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 662 ~~~~~---l~~-~y~~~g~~~~A~~~~~~m~~~ 690 (830)
...-+ .+- .|--.|+.++|.++-+..-+.
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 54322 222 345689999999987766543
No 476
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.10 E-value=2.2e+02 Score=20.51 Aligned_cols=35 Identities=6% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHH
Q 047408 70 IGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQ 104 (830)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~ 104 (830)
|+.+...|--.+++.+.-++...|++|.+...+++
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~ 45 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPEALAAVIK 45 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34455556666666666666666666665555543
No 477
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=21.04 E-value=70 Score=28.79 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=28.7
Q ss_pred HHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCCCCCeEEEEecccccccccchhhhhhcccc
Q 047408 735 KREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTAR 805 (830)
Q Consensus 735 ~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~ 805 (830)
.+..|+--+-.+.|.++. .+|.||.-.|--||+.- +|+.+|
T Consensus 62 ~e~nYvnQPP~IPHsi~~----------------------------Yqvtkn~N~CLsCH~~e--~s~~tG 102 (155)
T COG3043 62 MELNYVNQPPMIPHSIEG----------------------------YQVTKNTNRCLSCHSVE--NSRTTG 102 (155)
T ss_pred hhhccCCCCCCCcccccC----------------------------ceeecccchhhhccCHH--HHhhcC
Confidence 355677666677777654 58999999999999743 344444
No 478
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=20.94 E-value=3.7e+02 Score=22.28 Aligned_cols=58 Identities=9% Similarity=0.079 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 047408 117 KVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNF 179 (830)
Q Consensus 117 ~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 179 (830)
.+.+.+.+.|+..+ .-.-...+..-+.+.+.++++.++.++..+|..+..++-..+..
T Consensus 24 ~v~~~L~~~gvlt~-----~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 24 ELLIHLLQKDILTD-----SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHcCCCCH-----HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 45566666664433 22222333445677888888888888888888888888665543
No 479
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=20.88 E-value=2.2e+02 Score=23.81 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.1
Q ss_pred CcCCCChhHHHHHHHHHHHHHHHcCccCCCCccccc
Q 047408 714 GSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALIN 749 (830)
Q Consensus 714 ~~~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 749 (830)
...||..........++.....+.|..|....-+..
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~~ 92 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLAV 92 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccC
Confidence 467999988888888899989999999987655443
No 480
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.87 E-value=3.2e+02 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLV 575 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~ 575 (830)
..++..+.+++..-.|.++++++.+.+..-+..|....|..+...|.+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 345556666666677777777777766666666666666666666654
No 481
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.55 E-value=3.4e+02 Score=22.14 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHH
Q 047408 478 REIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 478 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 543 (830)
..++..+.+.|+-.. .-.-...+...+.+.|.++++.++.++..+|.+...++...|+..-|
T Consensus 19 ~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346666666664322 22223334556788888888888888888888888888777765544
No 482
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.47 E-value=1.1e+03 Score=25.56 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHhhhCC
Q 047408 503 YVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 503 y~k~g~~~~A~~~f~~m~ 520 (830)
..+.+++..|.++|+++.
T Consensus 140 l~n~~dy~aA~~~~~~L~ 157 (380)
T TIGR02710 140 AINAFDYLFAHARLETLL 157 (380)
T ss_pred HHHhcChHHHHHHHHHHH
Confidence 344555555555555554
No 483
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.40 E-value=5.5e+02 Score=28.43 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred ChHHHHHHHhcCCCCCchhHHHHHH-------------------HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHH
Q 047408 418 SMADAESVFNQMPVKDIVSWNTMIG-------------------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGR 478 (830)
Q Consensus 418 ~~~~A~~~f~~m~~~~~~~~n~~i~-------------------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~ 478 (830)
++++|.+..+.+++....+.--.-+ -+++++.+..+|.+| ....-+++|.+.++++.|+
T Consensus 29 d~~eav~y~k~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~ad--~lp~TIDSyTR~n~y~~A~ 106 (480)
T TIGR01503 29 DLQDAVDYHKSIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGGAD--FLPSTIDAYTRQNRYDEAA 106 (480)
T ss_pred CHHHHHHHHHhCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccCCC--ccceeeecccccccHHHHH
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047408 479 EIHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP 557 (830)
Q Consensus 479 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 557 (830)
+.+..-++.| .++++.|=--+ -++..+++.+....| .-.+||-++ |..+++-+...|+..
T Consensus 107 ~~l~~s~~~~--------~s~LNGfP~VnhGv~~~R~l~~~v~~P----------vQvRHGtpD-arlL~e~~~a~G~~a 167 (480)
T TIGR01503 107 VGIKESIKAG--------RSLLNGFPGVNHGVKGCRKVLEAVNLP----------LQIRHGTPD-ARLLAEIILAGGFTS 167 (480)
T ss_pred HHHHhhhhcC--------cccccCCCcccccHHHHHHHHHhCCCC----------eeccCCCCc-HHHHHHHHHHcCCCc
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHH---HhHhhc---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFN---MMRYEC---NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWG 631 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~---~m~~~~---~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~ 631 (830)
.+--..+.---|++.=-+++++..++ ++...| |+..+.+.+.+|-..| ++|...+--
T Consensus 168 ~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL-----------------vPPsisiav 230 (480)
T TIGR01503 168 FEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL-----------------VPPSISNAI 230 (480)
T ss_pred cCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc-----------------cChHHHHHH
Q ss_pred HHHHHHHhcCC
Q 047408 632 SLLCGCRIHHE 642 (830)
Q Consensus 632 ~ll~~~~~~g~ 642 (830)
++|.+.....+
T Consensus 231 ~ilE~Lla~eq 241 (480)
T TIGR01503 231 GIIEGLLAAEQ 241 (480)
T ss_pred HHHHHHHHHHc
No 484
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=20.10 E-value=9.3e+02 Score=24.51 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=21.6
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 401 SSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 401 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
.|+.....+...|.+.|++.+|+..|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4677888899999999999999988743
Done!