Query 047408
Match_columns 830
No_of_seqs 981 out of 5215
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:02:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4E-41 1.4E-45 392.7 35.2 517 43-673 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-39 3.6E-44 380.7 39.4 464 216-689 68-578 (597)
3 4g26_A Pentatricopeptide repea 99.9 1.6E-26 5.4E-31 259.3 20.8 134 473-607 85-222 (501)
4 4g26_A Pentatricopeptide repea 99.9 2.5E-26 8.4E-31 257.8 17.5 184 233-416 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4.1E-24 1.4E-28 234.6 34.0 375 239-676 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 8.6E-24 2.9E-28 232.0 32.1 352 308-689 5-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 3.8E-22 1.3E-26 223.3 27.3 318 333-670 26-372 (450)
8 2gw1_A Mitochondrial precursor 99.9 8.8E-21 3E-25 215.9 29.4 433 233-689 7-477 (514)
9 2gw1_A Mitochondrial precursor 99.9 8.5E-20 2.9E-24 207.7 34.6 437 165-667 8-489 (514)
10 3fp2_A TPR repeat-containing p 99.8 1.8E-19 6.2E-24 206.4 27.1 426 232-689 25-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.8 7.3E-19 2.5E-23 196.5 26.1 297 366-689 24-357 (450)
12 3fp2_A TPR repeat-containing p 99.8 8.1E-18 2.8E-22 192.6 31.8 205 458-665 276-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 6.3E-17 2.2E-21 174.2 31.0 329 334-736 4-355 (359)
14 1b89_A Protein (clathrin heavy 99.8 1.9E-18 6.6E-23 184.5 13.6 304 313-672 14-339 (449)
15 3ieg_A DNAJ homolog subfamily 99.8 1.8E-16 6E-21 170.7 27.4 310 304-675 5-354 (359)
16 3hym_B Cell division cycle pro 99.7 3.6E-16 1.2E-20 166.3 25.5 287 331-677 20-321 (330)
17 3hym_B Cell division cycle pro 99.7 7.7E-16 2.6E-20 163.7 26.3 262 400-688 19-297 (330)
18 1xi4_A Clathrin heavy chain; a 99.7 8E-13 2.7E-17 156.6 51.8 532 67-683 989-1585(1630)
19 1xi4_A Clathrin heavy chain; a 99.7 4.2E-13 1.4E-17 158.9 48.6 338 274-675 1056-1415(1630)
20 1fch_A Peroxisomal targeting s 99.7 2.8E-16 9.7E-21 170.2 17.3 147 534-685 191-354 (368)
21 2ooe_A Cleavage stimulation fa 99.7 1.2E-14 4.3E-19 166.0 31.5 409 229-690 10-492 (530)
22 1b89_A Protein (clathrin heavy 99.7 8.8E-16 3E-20 164.1 19.9 372 216-647 18-408 (449)
23 3spa_A Mtrpol, DNA-directed RN 99.7 6.2E-17 2.1E-21 185.7 7.6 131 490-621 124-262 (1134)
24 2xm6_A Protein corresponding t 99.7 2.9E-13 1E-17 152.9 37.3 372 231-675 38-454 (490)
25 4eqf_A PEX5-related protein; a 99.6 4E-15 1.4E-19 161.2 19.9 230 457-689 64-309 (365)
26 3mkr_A Coatomer subunit epsilo 99.6 1.6E-14 5.3E-19 151.0 23.2 245 405-683 36-287 (291)
27 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-16 4.5E-21 183.0 7.7 131 300-430 125-263 (1134)
28 4g1t_A Interferon-induced prot 99.6 1.7E-14 5.7E-19 162.2 24.4 363 302-701 51-470 (472)
29 1fch_A Peroxisomal targeting s 99.6 2.8E-14 9.7E-19 154.4 25.1 249 312-586 35-312 (368)
30 4eqf_A PEX5-related protein; a 99.6 8.3E-16 2.8E-20 166.6 12.5 220 460-685 101-351 (365)
31 2ooe_A Cleavage stimulation fa 99.6 9.4E-13 3.2E-17 150.3 35.0 374 300-691 11-455 (530)
32 2xm6_A Protein corresponding t 99.6 9.3E-13 3.2E-17 148.8 32.8 337 315-692 56-434 (490)
33 3cv0_A Peroxisome targeting si 99.6 1.5E-14 5.2E-19 153.4 17.0 258 402-685 20-310 (327)
34 3mkr_A Coatomer subunit epsilo 99.6 5.3E-14 1.8E-18 146.9 20.3 244 411-689 7-263 (291)
35 3cv0_A Peroxisome targeting si 99.6 2.1E-13 7.2E-18 144.6 24.8 239 332-586 20-267 (327)
36 2pl2_A Hypothetical conserved 99.5 1.2E-13 3.9E-18 137.7 16.7 193 490-687 2-211 (217)
37 4g1t_A Interferon-induced prot 99.5 8.5E-13 2.9E-17 148.2 24.5 384 232-668 51-471 (472)
38 3uq3_A Heat shock protein STI1 99.5 3E-13 1E-17 137.9 18.7 215 461-689 8-235 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.4E-12 8.1E-17 132.7 18.8 240 381-684 18-269 (275)
40 3u4t_A TPR repeat-containing p 99.4 1.4E-12 4.8E-17 134.4 15.3 245 406-676 6-270 (272)
41 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-11 3.8E-16 126.0 21.4 194 493-689 37-237 (252)
42 2vq2_A PILW, putative fimbrial 99.4 1.8E-11 6.3E-16 121.6 21.4 196 491-689 6-210 (225)
43 3e4b_A ALGK; tetratricopeptide 99.4 1.4E-10 4.6E-15 129.2 27.2 342 306-686 39-417 (452)
44 3uq3_A Heat shock protein STI1 99.4 1.8E-11 6.1E-16 124.6 18.1 232 335-669 7-255 (258)
45 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.5E-11 8.4E-16 125.1 19.0 219 466-690 13-244 (275)
46 2h6f_A Protein farnesyltransfe 99.3 1.3E-11 4.6E-16 133.3 17.5 220 461-687 100-344 (382)
47 2q7f_A YRRB protein; TPR, prot 99.3 1.2E-11 4.2E-16 124.7 16.0 206 460-669 25-235 (243)
48 2ho1_A Type 4 fimbrial biogene 99.3 5.5E-11 1.9E-15 120.8 20.5 204 459-666 38-248 (252)
49 4abn_A Tetratricopeptide repea 99.3 6.4E-12 2.2E-16 140.9 14.3 207 472-684 82-315 (474)
50 2vq2_A PILW, putative fimbrial 99.3 4.1E-11 1.4E-15 119.0 18.8 206 459-668 9-223 (225)
51 2q7f_A YRRB protein; TPR, prot 99.3 1.2E-11 4.3E-16 124.7 15.2 195 491-689 21-221 (243)
52 2h6f_A Protein farnesyltransfe 99.3 8E-12 2.7E-16 135.0 14.4 245 403-674 97-366 (382)
53 3vtx_A MAMA; tetratricopeptide 99.3 5.2E-11 1.8E-15 114.7 17.8 162 523-689 4-169 (184)
54 3u4t_A TPR repeat-containing p 99.3 5.3E-11 1.8E-15 122.4 18.9 222 462-689 7-249 (272)
55 1ouv_A Conserved hypothetical 99.3 2.1E-10 7.1E-15 118.3 22.1 221 459-691 7-252 (273)
56 2pl2_A Hypothetical conserved 99.3 3.6E-11 1.2E-15 119.5 14.8 156 493-653 39-211 (217)
57 3sf4_A G-protein-signaling mod 99.3 7.3E-11 2.5E-15 129.1 17.6 292 335-678 11-364 (406)
58 4gyw_A UDP-N-acetylglucosamine 99.3 3.1E-11 1E-15 140.9 15.0 161 523-688 8-172 (723)
59 3e4b_A ALGK; tetratricopeptide 99.2 1.4E-10 4.6E-15 129.2 19.1 347 307-692 8-389 (452)
60 4a1s_A PINS, partner of inscut 99.2 1.2E-11 4.1E-16 135.9 9.9 227 463-689 91-371 (411)
61 3sf4_A G-protein-signaling mod 99.2 3.8E-11 1.3E-15 131.3 13.6 227 463-689 52-335 (406)
62 1ouv_A Conserved hypothetical 99.2 3.4E-10 1.2E-14 116.6 19.4 227 402-661 5-256 (273)
63 3ro2_A PINS homolog, G-protein 99.2 7.6E-11 2.6E-15 124.8 14.9 263 405-689 7-331 (338)
64 4i17_A Hypothetical protein; T 99.2 2.6E-10 8.8E-15 114.1 17.7 185 493-689 7-208 (228)
65 3vtx_A MAMA; tetratricopeptide 99.2 1.4E-10 4.9E-15 111.5 15.2 167 491-662 3-176 (184)
66 2ond_A Cleavage stimulation fa 99.2 1.6E-09 5.5E-14 113.9 23.0 210 475-690 33-270 (308)
67 4abn_A Tetratricopeptide repea 99.2 2.4E-10 8.3E-15 128.0 16.8 176 509-689 84-286 (474)
68 3ro2_A PINS homolog, G-protein 99.2 7.4E-10 2.5E-14 117.1 18.5 270 338-659 10-335 (338)
69 4a1s_A PINS, partner of inscut 99.2 6.5E-10 2.2E-14 122.0 18.5 270 338-659 53-375 (411)
70 4e6h_A MRNA 3'-END-processing 99.2 2.3E-08 7.9E-13 115.2 31.8 405 230-661 64-575 (679)
71 2ond_A Cleavage stimulation fa 99.1 1.2E-09 4.2E-14 114.8 18.9 185 474-663 80-277 (308)
72 4i17_A Hypothetical protein; T 99.1 1.3E-09 4.6E-14 108.8 18.2 205 456-672 5-225 (228)
73 3nf1_A KLC 1, kinesin light ch 99.1 3.4E-10 1.2E-14 118.6 14.0 231 459-689 28-306 (311)
74 3as5_A MAMA; tetratricopeptide 99.1 1.2E-09 4E-14 104.5 16.5 158 495-689 10-172 (186)
75 3ulq_A Response regulator aspa 99.1 2.6E-09 9E-14 116.1 20.2 195 494-689 144-367 (383)
76 3as5_A MAMA; tetratricopeptide 99.1 5.3E-09 1.8E-13 99.9 18.3 169 460-664 10-181 (186)
77 4e6h_A MRNA 3'-END-processing 99.1 1.9E-07 6.3E-12 107.7 34.0 127 79-207 48-194 (679)
78 3nf1_A KLC 1, kinesin light ch 99.1 4E-10 1.4E-14 118.0 10.9 251 333-659 27-310 (311)
79 1hz4_A MALT regulatory protein 99.0 2.7E-07 9.2E-12 99.6 29.9 163 527-689 138-321 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.0 1.7E-09 5.9E-14 126.2 11.8 164 491-659 7-177 (723)
81 3ulq_A Response regulator aspa 99.0 6.6E-09 2.3E-13 112.9 15.6 166 493-658 184-370 (383)
82 3edt_B KLC 2, kinesin light ch 98.9 3.6E-09 1.2E-13 108.8 12.0 199 491-689 41-280 (283)
83 3qky_A Outer membrane assembly 98.9 4.7E-08 1.6E-12 99.8 20.2 201 493-736 15-247 (261)
84 3q15_A PSP28, response regulat 98.9 2.4E-08 8.2E-13 108.3 17.5 221 467-688 110-363 (378)
85 4ga2_A E3 SUMO-protein ligase 98.9 1.7E-09 5.7E-14 100.3 5.8 139 533-676 6-149 (150)
86 2pzi_A Probable serine/threoni 98.9 2.4E-08 8.1E-13 117.0 16.7 167 504-676 402-583 (681)
87 1qqe_A Vesicular transport pro 98.9 2.6E-08 8.8E-13 103.7 15.2 199 473-686 32-265 (292)
88 3q15_A PSP28, response regulat 98.8 2E-07 6.8E-12 100.9 22.3 231 407-656 105-365 (378)
89 4ga2_A E3 SUMO-protein ligase 98.8 7.1E-09 2.4E-13 96.0 8.5 136 567-731 5-144 (150)
90 3qky_A Outer membrane assembly 98.8 7.3E-08 2.5E-12 98.3 16.8 204 457-681 14-252 (261)
91 3edt_B KLC 2, kinesin light ch 98.8 5.9E-08 2E-12 99.6 15.5 230 414-657 12-282 (283)
92 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.8E-07 6.2E-12 93.0 17.7 181 493-693 4-216 (225)
93 3qou_A Protein YBBN; thioredox 98.8 5.9E-08 2E-12 100.7 13.8 160 523-687 116-281 (287)
94 1qqe_A Vesicular transport pro 98.7 6.5E-08 2.2E-12 100.7 13.7 198 466-665 45-278 (292)
95 1hz4_A MALT regulatory protein 98.7 5.4E-07 1.9E-11 97.1 21.2 223 467-689 23-281 (373)
96 4gco_A Protein STI-1; structur 98.7 5.1E-08 1.8E-12 87.1 10.7 99 591-689 8-109 (126)
97 2fo7_A Synthetic consensus TPR 98.7 1.4E-07 4.7E-12 84.3 13.7 129 526-689 3-131 (136)
98 2fo7_A Synthetic consensus TPR 98.7 2.4E-07 8.1E-12 82.8 15.1 121 495-619 3-127 (136)
99 2r5s_A Uncharacterized protein 98.7 4.8E-08 1.7E-12 93.0 10.5 76 613-688 92-171 (176)
100 3gyz_A Chaperone protein IPGC; 98.7 7.1E-08 2.4E-12 89.0 9.4 100 590-689 30-132 (151)
101 3mv2_B Coatomer subunit epsilo 98.6 2.3E-06 7.7E-11 87.7 20.9 164 493-663 100-289 (310)
102 3mv2_B Coatomer subunit epsilo 98.6 8.7E-07 3E-11 90.8 17.7 173 512-689 85-281 (310)
103 2pzi_A Probable serine/threoni 98.6 3.1E-07 1.1E-11 107.5 16.5 191 469-666 402-612 (681)
104 2vsy_A XCC0866; transferase, g 98.6 2.2E-07 7.7E-12 106.6 14.7 158 506-668 2-169 (568)
105 3urz_A Uncharacterized protein 98.6 2.9E-07 1E-11 90.3 13.4 155 500-660 11-190 (208)
106 2vsy_A XCC0866; transferase, g 98.6 7.1E-07 2.4E-11 102.4 18.5 144 472-621 3-154 (568)
107 2vgx_A Chaperone SYCD; alterna 98.6 1.3E-07 4.3E-12 87.2 9.0 100 590-689 15-117 (148)
108 2c2l_A CHIP, carboxy terminus 98.6 1.5E-07 5.2E-12 97.2 10.7 190 492-689 3-198 (281)
109 3rjv_A Putative SEL1 repeat pr 98.6 1.9E-06 6.4E-11 84.7 17.5 161 523-692 17-199 (212)
110 2ifu_A Gamma-SNAP; membrane fu 98.6 1.7E-06 5.7E-11 90.6 17.9 186 495-683 38-254 (307)
111 4gco_A Protein STI-1; structur 98.5 2.7E-07 9.3E-12 82.3 9.6 114 555-671 8-125 (126)
112 3urz_A Uncharacterized protein 98.5 8.3E-07 2.8E-11 87.0 13.8 157 527-689 7-185 (208)
113 3qou_A Protein YBBN; thioredox 98.5 1E-06 3.6E-11 91.2 14.1 130 557-689 114-247 (287)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.7E-06 5.8E-11 84.8 14.9 119 566-689 13-149 (213)
115 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.9E-06 1E-10 84.2 16.6 182 462-663 8-220 (225)
116 2qfc_A PLCR protein; TPR, HTH, 98.5 2.4E-06 8.4E-11 88.6 16.1 164 525-688 76-264 (293)
117 3u3w_A Transcriptional activat 98.5 1E-05 3.4E-10 83.9 20.8 160 529-688 80-264 (293)
118 2r5s_A Uncharacterized protein 98.5 9.1E-07 3.1E-11 84.0 11.6 155 495-655 8-172 (176)
119 3upv_A Heat shock protein STI1 98.4 1.4E-06 4.8E-11 77.4 11.5 118 596-733 5-124 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.4 4.3E-06 1.5E-10 81.8 16.0 144 496-660 9-154 (213)
121 4f3v_A ESX-1 secretion system 98.4 1.3E-06 4.4E-11 88.3 12.2 180 505-689 18-236 (282)
122 2xcb_A PCRH, regulatory protei 98.4 1.4E-06 4.8E-11 79.4 11.3 95 595-689 18-114 (142)
123 2uy1_A Cleavage stimulation fa 98.4 1.7E-05 5.8E-10 88.5 21.7 371 111-552 10-412 (493)
124 3dra_A Protein farnesyltransfe 98.4 7.9E-06 2.7E-10 84.5 17.4 210 474-689 49-286 (306)
125 1p5q_A FKBP52, FK506-binding p 98.4 1.3E-06 4.4E-11 92.7 11.7 143 523-687 146-291 (336)
126 2uy1_A Cleavage stimulation fa 98.4 7.2E-05 2.5E-09 83.4 25.9 199 475-688 196-411 (493)
127 2ifu_A Gamma-SNAP; membrane fu 98.4 1.1E-06 3.7E-11 92.1 10.2 197 470-688 3-222 (307)
128 1a17_A Serine/threonine protei 98.3 4.4E-06 1.5E-10 77.8 12.9 121 565-688 19-144 (166)
129 4f3v_A ESX-1 secretion system 98.3 1E-06 3.5E-11 89.1 8.7 194 470-669 18-249 (282)
130 2lni_A Stress-induced-phosphop 98.3 3.6E-06 1.2E-10 75.0 11.4 81 596-676 51-133 (133)
131 1na0_A Designed protein CTPR3; 98.3 5.7E-06 1.9E-10 72.5 12.5 112 562-675 12-125 (125)
132 3gyz_A Chaperone protein IPGC; 98.3 1.4E-06 4.7E-11 80.3 8.5 103 556-661 32-138 (151)
133 3rjv_A Putative SEL1 repeat pr 98.3 2.2E-05 7.5E-10 76.9 17.5 173 477-659 5-200 (212)
134 1hxi_A PEX5, peroxisome target 98.3 2.9E-06 9.8E-11 74.9 9.9 94 596-689 18-113 (121)
135 3sz7_A HSC70 cochaperone (SGT) 98.3 3.6E-06 1.2E-10 78.7 11.0 95 595-689 11-107 (164)
136 1elw_A TPR1-domain of HOP; HOP 98.3 8.6E-06 2.9E-10 70.5 12.4 94 596-689 5-100 (118)
137 2e2e_A Formate-dependent nitri 98.3 3.6E-06 1.2E-10 79.8 10.7 115 572-689 23-143 (177)
138 3gw4_A Uncharacterized protein 98.3 1.4E-05 4.6E-10 77.3 14.8 155 505-688 4-174 (203)
139 2lni_A Stress-induced-phosphop 98.2 6.7E-06 2.3E-10 73.2 11.6 95 595-689 16-112 (133)
140 2vyi_A SGTA protein; chaperone 98.2 5.8E-06 2E-10 73.1 11.1 113 562-677 15-130 (131)
141 2kck_A TPR repeat; tetratricop 98.2 5.4E-06 1.8E-10 71.1 10.6 97 595-691 6-107 (112)
142 2vgx_A Chaperone SYCD; alterna 98.2 1.3E-06 4.5E-11 80.3 6.8 109 555-666 16-128 (148)
143 1na0_A Designed protein CTPR3; 98.2 1.2E-05 4E-10 70.4 12.9 95 595-689 9-105 (125)
144 3q49_B STIP1 homology and U bo 98.2 6.7E-06 2.3E-10 73.9 11.5 96 594-689 8-105 (137)
145 2dba_A Smooth muscle cell asso 98.2 1.3E-05 4.5E-10 72.8 13.4 95 595-689 28-127 (148)
146 3rkv_A Putative peptidylprolyl 98.2 5.3E-06 1.8E-10 77.4 10.5 84 627-736 63-147 (162)
147 1wao_1 Serine/threonine protei 98.2 2.4E-06 8.1E-11 95.3 9.3 115 569-686 16-135 (477)
148 2fbn_A 70 kDa peptidylprolyl i 98.2 1.3E-06 4.5E-11 84.7 6.2 171 497-688 8-184 (198)
149 2xcb_A PCRH, regulatory protei 98.2 3E-06 1E-10 77.2 7.6 113 556-671 14-130 (142)
150 2vyi_A SGTA protein; chaperone 98.2 1.8E-05 6E-10 69.9 12.4 95 595-689 12-108 (131)
151 3u3w_A Transcriptional activat 98.2 8.3E-05 2.8E-09 76.9 19.3 158 499-656 81-266 (293)
152 2hr2_A Hypothetical protein; a 98.2 1.8E-06 6E-11 78.9 5.5 62 628-689 58-130 (159)
153 4gcn_A Protein STI-1; structur 98.1 5.2E-06 1.8E-10 73.9 8.5 93 597-689 10-111 (127)
154 2e2e_A Formate-dependent nitri 98.1 8.7E-06 3E-10 77.1 9.5 127 535-666 21-154 (177)
155 2xev_A YBGF; tetratricopeptide 98.1 1.9E-05 6.6E-10 69.9 10.8 91 599-689 6-104 (129)
156 2dba_A Smooth muscle cell asso 98.1 3.6E-05 1.2E-09 69.9 12.9 117 523-673 27-145 (148)
157 3dra_A Protein farnesyltransfe 98.1 0.00012 4E-09 75.6 17.9 228 414-669 44-301 (306)
158 2qfc_A PLCR protein; TPR, HTH, 98.1 2.8E-05 9.4E-10 80.6 13.2 162 495-656 77-266 (293)
159 3gw4_A Uncharacterized protein 98.1 4.9E-05 1.7E-09 73.3 14.3 151 469-620 3-172 (203)
160 1elw_A TPR1-domain of HOP; HOP 98.1 3.1E-05 1E-09 66.9 11.4 105 564-671 9-116 (118)
161 1elr_A TPR2A-domain of HOP; HO 98.0 2.5E-05 8.4E-10 69.0 10.8 94 596-689 5-107 (131)
162 1p5q_A FKBP52, FK506-binding p 98.0 2.2E-05 7.4E-10 83.2 11.4 93 597-689 149-258 (336)
163 2fbn_A 70 kDa peptidylprolyl i 98.0 5.4E-05 1.8E-09 73.1 13.3 114 597-736 40-171 (198)
164 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.5E-10 88.5 10.7 113 534-651 16-134 (477)
165 3sz7_A HSC70 cochaperone (SGT) 98.0 1.9E-05 6.4E-10 73.7 9.7 104 562-668 14-120 (164)
166 3upv_A Heat shock protein STI1 98.0 2.1E-05 7.1E-10 69.6 8.9 105 564-671 9-122 (126)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 4.3E-05 1.5E-09 84.6 13.4 142 524-687 268-412 (457)
168 1a17_A Serine/threonine protei 98.0 6.7E-05 2.3E-09 69.5 12.8 125 526-655 15-145 (166)
169 3k9i_A BH0479 protein; putativ 97.9 6.8E-06 2.3E-10 71.9 4.9 83 607-689 2-89 (117)
170 3n71_A Histone lysine methyltr 97.9 5.7E-05 1.9E-09 83.6 12.5 128 569-696 319-470 (490)
171 3q7a_A Farnesyltransferase alp 97.9 0.00015 5.3E-09 75.6 14.9 211 473-689 69-330 (349)
172 2c2l_A CHIP, carboxy terminus 97.9 4.4E-05 1.5E-09 78.5 10.8 110 559-671 4-116 (281)
173 3q49_B STIP1 homology and U bo 97.9 6.3E-05 2.2E-09 67.3 10.2 96 561-659 11-109 (137)
174 2hr2_A Hypothetical protein; a 97.9 2.2E-05 7.4E-10 71.7 6.7 116 526-667 13-142 (159)
175 1ihg_A Cyclophilin 40; ppiase 97.8 6E-05 2.1E-09 80.8 11.2 137 525-683 224-363 (370)
176 1ihg_A Cyclophilin 40; ppiase 97.8 7E-05 2.4E-09 80.3 11.3 84 626-735 272-355 (370)
177 3ro3_A PINS homolog, G-protein 97.8 8E-05 2.7E-09 68.3 10.3 132 526-689 11-157 (164)
178 4b4t_Q 26S proteasome regulato 97.8 9.5E-05 3.2E-09 81.1 12.5 187 502-688 13-243 (434)
179 4gcn_A Protein STI-1; structur 97.8 6.1E-05 2.1E-09 66.9 8.8 59 526-586 10-69 (127)
180 2kck_A TPR repeat; tetratricop 97.8 0.0001 3.4E-09 62.9 9.9 96 563-661 10-111 (112)
181 1hxi_A PEX5, peroxisome target 97.8 5E-05 1.7E-09 66.8 7.9 96 563-661 21-119 (121)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00018 6.1E-09 79.6 13.9 63 627-689 317-379 (457)
183 2xev_A YBGF; tetratricopeptide 97.7 0.00018 6.1E-09 63.5 11.0 98 567-667 10-116 (129)
184 3dss_A Geranylgeranyl transfer 97.7 0.00074 2.5E-08 70.1 16.9 208 476-689 48-303 (331)
185 1dce_A Protein (RAB geranylger 97.7 0.0003 1E-08 79.7 15.1 167 508-679 44-244 (567)
186 1elr_A TPR2A-domain of HOP; HO 97.7 0.00023 7.8E-09 62.6 11.2 115 525-673 5-124 (131)
187 2if4_A ATFKBP42; FKBP-like, al 97.7 5.4E-05 1.9E-09 80.1 8.2 147 525-691 180-329 (338)
188 3rkv_A Putative peptidylprolyl 97.7 5.9E-05 2E-09 70.1 7.2 123 525-673 12-144 (162)
189 3dss_A Geranylgeranyl transfer 97.7 0.0012 4.1E-08 68.5 17.6 239 414-670 40-318 (331)
190 3ro3_A PINS homolog, G-protein 97.7 0.00015 5E-09 66.5 9.6 136 493-657 9-159 (164)
191 2if4_A ATFKBP42; FKBP-like, al 97.7 5.3E-05 1.8E-09 80.2 7.2 111 562-689 182-292 (338)
192 2l6j_A TPR repeat-containing p 97.6 6.6E-05 2.3E-09 64.2 6.3 89 595-683 4-100 (111)
193 4b4t_Q 26S proteasome regulato 97.6 0.00031 1.1E-08 76.9 13.2 158 532-689 12-203 (434)
194 3k9i_A BH0479 protein; putativ 97.6 3.4E-05 1.1E-09 67.3 4.0 94 572-665 3-99 (117)
195 3n71_A Histone lysine methyltr 97.6 0.00013 4.3E-09 80.8 9.5 115 604-736 318-450 (490)
196 2kat_A Uncharacterized protein 97.6 0.00014 4.7E-09 63.0 7.6 77 613-689 3-81 (115)
197 3ma5_A Tetratricopeptide repea 97.6 0.0002 6.9E-09 60.3 8.4 64 626-689 6-69 (100)
198 1zu2_A Mitochondrial import re 97.6 4.3E-05 1.5E-09 69.6 4.1 84 606-689 13-119 (158)
199 1na3_A Designed protein CTPR2; 97.6 0.00024 8.3E-09 58.0 8.4 81 595-675 9-91 (91)
200 3qwp_A SET and MYND domain-con 97.4 0.00018 6E-09 78.5 7.0 113 605-735 297-427 (429)
201 3bee_A Putative YFRE protein; 97.4 0.0006 2E-08 56.4 8.3 69 624-692 3-74 (93)
202 3q7a_A Farnesyltransferase alp 97.3 0.0037 1.3E-07 65.2 15.8 166 507-677 68-258 (349)
203 2l6j_A TPR repeat-containing p 97.3 0.0013 4.3E-08 56.0 10.4 65 625-689 2-66 (111)
204 1na3_A Designed protein CTPR2; 97.2 0.0015 5.3E-08 53.0 9.6 63 627-689 9-71 (91)
205 1dce_A Protein (RAB geranylger 97.2 0.0023 8E-08 72.4 13.3 148 537-689 42-220 (567)
206 1zu2_A Mitochondrial import re 97.1 0.00019 6.5E-09 65.3 2.9 101 535-663 13-127 (158)
207 3qww_A SET and MYND domain-con 97.1 0.00026 8.9E-09 77.0 4.5 81 609-689 312-410 (433)
208 1klx_A Cysteine rich protein B 96.9 0.0074 2.5E-07 54.0 11.2 88 602-691 32-127 (138)
209 2kc7_A BFR218_protein; tetratr 96.8 0.0037 1.3E-07 51.9 8.3 63 602-664 7-72 (99)
210 2kat_A Uncharacterized protein 96.8 0.0026 9E-08 54.7 7.5 80 578-660 4-86 (115)
211 3ly7_A Transcriptional activat 96.8 0.012 4.2E-07 61.2 13.7 141 521-689 191-338 (372)
212 3qww_A SET and MYND domain-con 96.7 0.0051 1.8E-07 66.7 10.6 69 596-664 341-424 (433)
213 1klx_A Cysteine rich protein B 96.7 0.0044 1.5E-07 55.5 8.5 113 537-658 8-128 (138)
214 1pc2_A Mitochondria fission pr 96.7 0.0077 2.6E-07 54.0 9.6 90 625-740 30-124 (152)
215 3qwp_A SET and MYND domain-con 96.7 0.009 3.1E-07 64.9 11.9 71 596-666 330-415 (429)
216 3ly7_A Transcriptional activat 96.5 0.014 4.7E-07 60.8 11.1 40 652-691 268-307 (372)
217 3ma5_A Tetratricopeptide repea 96.4 0.0084 2.9E-07 50.1 7.4 62 523-586 6-68 (100)
218 2kc7_A BFR218_protein; tetratr 96.4 0.01 3.6E-07 49.0 8.0 86 565-661 6-95 (99)
219 3u64_A Protein TP_0956; tetrat 96.0 0.018 6E-07 57.5 8.6 87 611-697 179-276 (301)
220 3mkq_A Coatomer beta'-subunit; 95.9 0.15 5E-06 60.5 18.2 154 411-621 607-762 (814)
221 3mkq_A Coatomer beta'-subunit; 95.9 0.09 3.1E-06 62.4 16.2 154 503-685 609-773 (814)
222 1wy6_A Hypothetical protein ST 95.5 0.83 2.9E-05 39.4 15.4 139 536-693 19-157 (172)
223 2v5f_A Prolyl 4-hydroxylase su 95.2 0.068 2.3E-06 44.8 8.3 71 597-667 7-86 (104)
224 3bee_A Putative YFRE protein; 95.0 0.093 3.2E-06 42.9 8.4 74 593-667 4-82 (93)
225 3lvg_A Clathrin heavy chain 1; 95.0 0.014 4.7E-07 62.0 3.9 391 61-488 52-510 (624)
226 3mkq_B Coatomer subunit alpha; 94.9 0.62 2.1E-05 42.8 14.2 130 500-653 12-141 (177)
227 1nzn_A CGI-135 protein, fissio 94.4 0.17 5.9E-06 43.5 8.6 88 625-738 33-125 (126)
228 1y8m_A FIS1; mitochondria, unk 94.1 0.76 2.6E-05 40.2 12.2 91 624-740 36-130 (144)
229 4gns_B Protein CSD3, chitin bi 93.9 0.14 4.8E-06 58.8 9.4 52 637-688 347-398 (754)
230 3u64_A Protein TP_0956; tetrat 93.8 0.36 1.2E-05 48.2 10.8 138 472-621 101-266 (301)
231 2v5f_A Prolyl 4-hydroxylase su 93.2 0.61 2.1E-05 38.8 10.1 64 626-689 4-74 (104)
232 1pc2_A Mitochondria fission pr 92.2 0.61 2.1E-05 41.7 8.8 94 465-561 5-106 (152)
233 3mkq_B Coatomer subunit alpha; 91.6 1.3 4.3E-05 40.7 10.5 97 571-685 17-113 (177)
234 3o48_A Mitochondria fission 1 90.2 1.2 4.1E-05 38.5 8.3 64 625-688 38-105 (134)
235 1nzn_A CGI-135 protein, fissio 89.5 3.1 0.0001 35.7 10.4 74 593-666 33-113 (126)
236 3lvg_A Clathrin heavy chain 1; 89.3 0.061 2.1E-06 57.2 -0.5 234 132-428 54-287 (624)
237 2qx5_A Nucleoporin NIC96; mRNA 86.2 49 0.0017 37.3 21.9 239 339-626 300-569 (661)
238 1wy6_A Hypothetical protein ST 85.4 18 0.0006 31.4 13.3 111 471-586 20-152 (172)
239 2p58_C Putative type III secre 83.8 11 0.00037 30.5 9.7 87 473-564 22-108 (116)
240 2uwj_G Type III export protein 83.3 8 0.00027 31.2 8.7 87 473-564 21-107 (115)
241 4b4t_P 26S proteasome regulato 82.3 16 0.00055 39.3 14.3 179 507-688 30-245 (445)
242 4h7y_A Dual specificity protei 82.2 2.5 8.5E-05 37.4 6.1 53 641-693 74-126 (161)
243 2ff4_A Probable regulatory pro 80.5 2.6 8.9E-05 44.7 7.0 68 630-697 174-246 (388)
244 3lpz_A GET4 (YOR164C homolog); 80.2 54 0.0019 33.3 19.4 92 256-348 83-182 (336)
245 1qsa_A Protein (soluble lytic 80.0 82 0.0028 35.3 29.3 135 73-213 16-151 (618)
246 4h7y_A Dual specificity protei 78.8 15 0.00051 32.5 9.8 98 330-429 10-120 (161)
247 3esl_A Checkpoint serine/threo 78.2 44 0.0015 31.1 14.1 107 612-744 61-173 (202)
248 3lpz_A GET4 (YOR164C homolog); 77.9 64 0.0022 32.8 19.6 168 495-689 37-215 (336)
249 1wdy_A 2-5A-dependent ribonucl 76.0 57 0.0019 31.7 15.4 41 477-517 198-240 (285)
250 1v54_E Cytochrome C oxidase po 75.7 17 0.00059 29.5 8.5 63 539-603 25-87 (109)
251 3txn_A 26S proteasome regulato 74.3 62 0.0021 33.9 15.2 158 496-654 22-208 (394)
252 3ffl_A Anaphase-promoting comp 74.2 16 0.00055 32.9 9.0 24 601-624 128-151 (167)
253 1n11_A Ankyrin; clathrin, BAND 72.8 99 0.0034 32.5 19.1 46 605-652 318-366 (437)
254 2ff4_A Probable regulatory pro 70.8 18 0.00063 38.0 10.4 67 530-597 177-247 (388)
255 3ffl_A Anaphase-promoting comp 69.9 28 0.00096 31.3 9.6 59 562-620 23-88 (167)
256 1v54_E Cytochrome C oxidase po 68.5 18 0.00061 29.4 7.1 54 613-666 31-84 (109)
257 1wdy_A 2-5A-dependent ribonucl 68.5 63 0.0021 31.3 13.6 24 306-329 6-29 (285)
258 3mv2_A Coatomer subunit alpha; 68.2 39 0.0013 34.0 11.3 58 619-690 197-256 (325)
259 4b4t_P 26S proteasome regulato 67.4 1.3E+02 0.0046 31.9 17.2 179 443-621 35-244 (445)
260 3txn_A 26S proteasome regulato 67.1 71 0.0024 33.4 13.7 160 526-687 21-207 (394)
261 4gns_B Protein CSD3, chitin bi 66.8 29 0.00098 39.9 11.4 124 306-430 252-398 (754)
262 1zbp_A Hypothetical protein VP 65.2 11 0.00039 36.8 6.6 55 605-659 7-63 (273)
263 2l0z_A Glycoprotein G2; zinc-b 65.1 2 6.7E-05 27.8 0.8 13 817-829 16-29 (42)
264 2y69_E Cytochrome C oxidase su 63.5 38 0.0013 29.2 8.5 62 540-603 69-130 (152)
265 3eiq_C Programmed cell death p 63.5 38 0.0013 34.9 10.6 66 495-560 219-289 (358)
266 1y8m_A FIS1; mitochondria, unk 60.9 84 0.0029 27.4 12.2 31 633-663 83-113 (144)
267 1qc6_A EVH1 domain from ENA/VA 60.6 4.1 0.00014 35.3 2.3 40 778-825 44-87 (130)
268 3o48_A Mitochondria fission 1 60.5 45 0.0015 28.7 8.7 34 630-663 81-114 (134)
269 2wpv_A GET4, UPF0363 protein Y 59.8 1.5E+02 0.005 29.8 19.8 97 255-351 80-186 (312)
270 4fhn_B Nucleoporin NUP120; pro 59.0 63 0.0022 39.4 13.4 142 464-613 818-989 (1139)
271 4fhn_B Nucleoporin NUP120; pro 58.5 70 0.0024 39.1 13.7 82 597-679 901-989 (1139)
272 4ady_A RPN2, 26S proteasome re 58.2 2.8E+02 0.0097 32.6 27.9 101 464-570 566-672 (963)
273 2wpv_A GET4, UPF0363 protein Y 56.9 1.6E+02 0.0056 29.5 21.5 168 495-688 35-215 (312)
274 4b4t_R RPN7, 26S proteasome re 56.2 53 0.0018 35.0 10.7 93 495-587 133-236 (429)
275 1n11_A Ankyrin; clathrin, BAND 55.4 2E+02 0.0069 30.0 16.9 323 70-428 18-366 (437)
276 3ltm_A Alpha-REP4; protein eng 55.3 1.3E+02 0.0044 27.7 15.8 60 300-360 93-152 (211)
277 2p58_C Putative type III secre 54.7 53 0.0018 26.6 7.4 80 109-193 20-99 (116)
278 2uwj_G Type III export protein 54.6 52 0.0018 26.6 7.3 80 109-193 19-98 (115)
279 1qsa_A Protein (soluble lytic 54.1 2.7E+02 0.0092 31.1 30.0 78 305-384 75-152 (618)
280 2y69_E Cytochrome C oxidase su 53.8 51 0.0018 28.4 7.7 55 612-666 73-127 (152)
281 4ady_A RPN2, 26S proteasome re 52.8 3.4E+02 0.012 31.9 26.5 279 337-627 343-661 (963)
282 3kea_A K1L; tropism, ANK repea 51.9 77 0.0026 31.2 10.7 19 409-427 164-182 (285)
283 1zbp_A Hypothetical protein VP 51.2 92 0.0032 30.4 10.3 50 570-621 8-57 (273)
284 3eu9_A Huntingtin-interacting 51.0 1.3E+02 0.0045 28.0 12.0 22 308-329 213-234 (240)
285 2qx5_A Nucleoporin NIC96; mRNA 51.0 3.1E+02 0.011 30.8 21.2 43 132-175 153-198 (661)
286 4b4t_R RPN7, 26S proteasome re 49.6 66 0.0022 34.2 10.2 92 596-687 132-234 (429)
287 2zu6_B Programmed cell death p 47.6 1.2E+02 0.0041 30.4 11.0 64 496-559 169-237 (307)
288 1k1a_A B-cell lymphoma 3-encod 46.8 1.4E+02 0.0048 27.9 11.4 29 239-267 13-41 (241)
289 3jxi_A Vanilloid receptor-rela 46.3 41 0.0014 32.5 7.4 184 241-429 11-248 (260)
290 2lo3_A SAGA-associated factor 42.6 6.4 0.00022 25.7 0.4 12 786-797 16-27 (44)
291 1k1a_A B-cell lymphoma 3-encod 42.6 1.4E+02 0.0049 27.8 10.7 55 205-267 13-74 (241)
292 3esl_A Checkpoint serine/threo 42.1 1.2E+02 0.0041 28.2 9.0 75 98-173 82-156 (202)
293 3mkr_B Coatomer subunit alpha; 41.8 72 0.0025 32.0 8.1 60 618-691 187-248 (320)
294 3jxi_A Vanilloid receptor-rela 40.6 1.1E+02 0.0037 29.3 9.5 19 309-327 229-247 (260)
295 3ltm_A Alpha-REP4; protein eng 40.3 2.2E+02 0.0074 26.0 16.4 121 132-260 64-184 (211)
296 3hra_A Ankyrin repeat family p 40.2 1.5E+02 0.0051 26.7 10.1 52 312-368 12-67 (201)
297 4a1g_A Mitotic checkpoint seri 39.9 1.5E+02 0.0052 26.1 9.0 77 612-694 52-134 (152)
298 3kea_A K1L; tropism, ANK repea 39.5 1.1E+02 0.0038 30.0 9.5 181 500-696 35-223 (285)
299 3hra_A Ankyrin repeat family p 38.6 1.6E+02 0.0056 26.4 10.1 18 311-328 112-129 (201)
300 3aji_A 26S proteasome non-ATPa 36.7 2.2E+02 0.0076 26.2 11.0 20 308-327 9-28 (231)
301 3ltj_A Alpharep-4; protein eng 36.0 2.5E+02 0.0084 25.4 16.0 79 300-382 88-166 (201)
302 2k0q_A Putative uncharacterize 35.5 11 0.00039 27.8 0.8 22 805-826 7-28 (74)
303 3ljn_A Hypothetical protein; a 35.4 2.4E+02 0.0081 28.6 11.7 20 410-429 177-196 (364)
304 3ljn_A Hypothetical protein; a 35.1 2.3E+02 0.0078 28.7 11.5 16 413-428 251-266 (364)
305 3b7b_A Euchromatic histone-lys 34.0 2.9E+02 0.0098 25.6 11.7 148 308-486 80-235 (237)
306 2wvi_A Mitotic checkpoint seri 34.0 1.9E+02 0.0066 25.8 8.9 77 612-694 47-129 (164)
307 2rfa_A Transient receptor pote 33.5 2.7E+02 0.0091 25.7 10.9 28 464-491 157-184 (232)
308 3i5p_A Nucleoporin NUP170; hel 33.0 1.8E+02 0.0062 31.6 10.2 193 475-691 27-247 (525)
309 3b7b_A Euchromatic histone-lys 32.8 1.9E+02 0.0066 26.8 9.8 207 465-689 15-235 (237)
310 2pnn_A Transient receptor pote 32.7 1.5E+02 0.005 28.6 9.1 20 409-428 236-255 (273)
311 3eu9_A Huntingtin-interacting 32.1 3E+02 0.01 25.2 11.6 18 310-327 47-64 (240)
312 4a1g_A Mitotic checkpoint seri 29.0 2.2E+02 0.0077 25.0 8.3 55 115-169 84-138 (152)
313 2nsz_A Programmed cell death p 28.7 1.4E+02 0.0048 25.4 6.9 64 496-559 10-78 (129)
314 4fke_A Aminopeptidase N; zinc 28.2 7.8E+02 0.027 28.8 18.1 232 414-658 605-862 (909)
315 1j0t_A MIH, MOLT-inhibiting ho 27.7 7.4 0.00025 29.9 -1.3 14 785-798 20-33 (78)
316 3aji_A 26S proteasome non-ATPa 27.4 3.6E+02 0.012 24.7 11.1 20 138-157 9-28 (231)
317 3d9h_A CDNA FLJ77766, highly s 25.6 3.5E+02 0.012 26.1 10.5 216 305-558 15-249 (285)
318 2etb_A Transient receptor pote 25.3 1.3E+02 0.0046 28.5 7.2 19 309-327 225-243 (256)
319 2hgo_A CASSIICOLIN; toxin, dis 25.1 14 0.00046 20.8 -0.2 13 818-830 8-22 (27)
320 2wvi_A Mitotic checkpoint seri 24.6 1.8E+02 0.006 26.1 6.9 59 113-171 77-135 (164)
321 3bqo_A Telomeric repeat-bindin 24.4 2.2E+02 0.0075 26.2 7.4 55 611-665 94-155 (211)
322 3mv2_A Coatomer subunit alpha; 24.3 5.4E+02 0.018 25.8 11.0 30 526-555 209-238 (325)
323 2nsz_A Programmed cell death p 23.9 2E+02 0.007 24.3 7.1 60 306-365 11-75 (129)
324 1dm5_A Annexin XII E105K mutan 23.8 5.5E+02 0.019 25.6 11.5 39 234-274 73-111 (315)
325 2z16_A Matrix protein 1, M1; A 23.0 65 0.0022 27.3 3.4 54 729-793 105-158 (165)
326 2d2s_A Exocyst complex compone 22.6 2E+02 0.0068 27.5 7.4 23 238-260 24-46 (235)
327 2d2s_A Exocyst complex compone 22.0 1.8E+02 0.006 27.9 6.9 87 531-621 25-117 (235)
328 1vf6_A PALS-1, PALS1-associate 21.9 65 0.0022 24.7 2.8 18 723-740 5-22 (83)
329 2ion_A PDCD4, programmed cell 21.9 1.3E+02 0.0046 26.4 5.6 63 496-558 12-79 (152)
330 1bd8_A P19INK4D CDK4/6 inhibit 20.8 2.3E+02 0.0078 24.1 7.2 149 271-429 3-156 (156)
331 2etb_A Transient receptor pote 20.8 2.1E+02 0.0073 27.0 7.6 91 240-330 7-115 (256)
332 3twe_A Alpha4H; unknown functi 20.5 1E+02 0.0035 17.2 2.7 17 720-736 3-19 (27)
333 2p1h_A APAF-1, apoptotic prote 20.1 2.7E+02 0.0093 21.8 6.7 62 116-182 25-86 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-41 Score=392.73 Aligned_cols=517 Identities=10% Similarity=-0.080 Sum_probs=366.6
Q ss_pred CCCCCCcchhhhhhhccC-CCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 047408 43 HSSCTINPISASISKTLV-CKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSI 121 (830)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 121 (830)
++.++....++..++..+ +++..|+.++..+.+.|++++|+.+|++|....|++.++..++.+|...|++++|..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 344555555555666555 5667788888888888888888888887776666666777777777788888888877776
Q ss_pred HHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccH
Q 047408 122 ICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTF 201 (830)
Q Consensus 122 ~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 201 (830)
+... .++ +.+++.++.+|.++|++++|+++|+++...+.. ..++.+.+..
T Consensus 143 ~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~---------------------- 192 (597)
T 2xpi_A 143 EDLY--NRS-SACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ---------------------- 192 (597)
T ss_dssp TCGG--GTC-HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC----------------------
T ss_pred Hhcc--ccc-hhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc----------------------
Confidence 6442 233 777777888888888888888888754322200 0000000000
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 047408 202 SCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCG 281 (830)
Q Consensus 202 ~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 281 (830)
+.-...+..+|+.++.+|.+.|++++|+++|++|.+. .|+..+....+..+....
T Consensus 193 -----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 193 -----------------------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp -----------------------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSC
T ss_pred -----------------------ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhccc
Confidence 0001234556677777777777777777777777664 243332222222222111
Q ss_pred ChHHH---HHH-HHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--CCeehHHHHHHHHHhcCChhHHHHH
Q 047408 282 ALMFG---RAV-HAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--RSVVSWTSMIAGYAREGVFDGAIRL 355 (830)
Q Consensus 282 ~~~~~---~~l-~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l 355 (830)
..... ..+ +..+...+......+++.++.+|.++|++++|.++|+++.+ +|..+|+.++.+|.+.|++++|+++
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11111 111 33333344444556677789999999999999999999988 7999999999999999999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch
Q 047408 356 FRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIV 435 (830)
Q Consensus 356 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~ 435 (830)
|++|.+.+ +.+..++..++.++...|++++|.+++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+.
T Consensus 328 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 402 (597)
T 2xpi_A 328 TTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--- 402 (597)
T ss_dssp HHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 99998765 3367788888889999999999999999888654 556788888999999999999998888765321
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHH
Q 047408 436 SWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSL 515 (830)
Q Consensus 436 ~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 515 (830)
.+.+..+++.++.+|.+.|++++|.++
T Consensus 403 -----------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 403 -----------------------------------------------------DPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp -----------------------------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 134566788888888888888888888
Q ss_pred hhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhc---
Q 047408 516 FDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYEC--- 589 (830)
Q Consensus 516 f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 589 (830)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.. ..+..++..+...+.+.|++++|.++|+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 88764 4477888888888988999999999999888742 3356688888888889999999999888886432
Q ss_pred CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 590 NIEPK--LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 590 ~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
+..|+ ..+|..++++|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 55776 678899999999999999999999886 3345 6788999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 047408 666 LLANVYAE 673 (830)
Q Consensus 666 ~l~~~y~~ 673 (830)
.|+++|..
T Consensus 589 ~l~~~~~~ 596 (597)
T 2xpi_A 589 LLKRALEE 596 (597)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99888864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-39 Score=380.72 Aligned_cols=464 Identities=9% Similarity=-0.011 Sum_probs=383.1
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 216 ~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|...|+++.|..++..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 145 (597)
T 2xpi_A 68 SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL 145 (597)
T ss_dssp --------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG
T ss_pred ccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 356677778888888999999999999999999999999999984 568889999999999999999999999998764
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC-C------------------CeehHHHHHHHHHhcCChhHHHHHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE-R------------------SVVSWTSMIAGYAREGVFDGAIRLF 356 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~------------------d~~~~~~li~~~~~~g~~~~A~~l~ 356 (830)
. ++++.+++.++.+|.++|++++|.++|+++.. . ++.+|+.++.+|.+.|++++|+++|
T Consensus 146 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 223 (597)
T 2xpi_A 146 Y--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY 223 (597)
T ss_dssp G--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred c--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3 67889999999999999999999999995433 3 4789999999999999999999999
Q ss_pred HHHHHcCCCCCcchH-HHHHHHhhccCcch--hhhhH-HHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 047408 357 RGMVREGIEPDVYAI-TSILHACACDGLLE--IGKDV-HDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPV- 431 (830)
Q Consensus 357 ~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~--~a~~~-~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~- 431 (830)
++|.+. .|+..+. ..+...+...+..+ .+..+ +..+...+......+++.++.+|.++|++++|.++|+++.+
T Consensus 224 ~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 224 KEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 999886 3554433 33333222222111 11111 44444445455566677777888888888888888888776
Q ss_pred -CCchhHHHHHH----------HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHH
Q 047408 432 -KDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIV 500 (830)
Q Consensus 432 -~~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 500 (830)
++..+|+.++. |+++|.+|...++.+..++..++.++...|+.++|.+++..+.+.. +.+..+++.++
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 67777877776 7888888877666688889999999999999999999999999654 66889999999
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHH
Q 047408 501 DMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDE 577 (830)
Q Consensus 501 ~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 577 (830)
.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999874 4578899999999999999999999999999852 3466789999999999999999
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 047408 578 GWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD--ATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 578 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
|.++|+.+.... ..+...|.+++++|.+.|++++|+++|+++ +..|+ ..+|..++.+|..+|++++|+.
T Consensus 460 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 460 ANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998542 235788999999999999999999999988 55787 7899999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.++++++++|+++..|..|+++|.+.|+|++|.+.++++.+
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998875
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.6e-26 Score=259.34 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
.++.|.+++..|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555553 3455555555555555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 047408 549 DMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR 607 (830)
Q Consensus 549 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 607 (830)
+|.+.|+.||.+||++|+.+|++.|++++|.++|++|.+. ++.|+..+|+.+++.+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555432 555555555555555543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.5e-26 Score=257.76 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=173.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCCch
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA---------LMFGRAVHAFALKACFSKEIS 303 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~~~~l~~~~~~~g~~~~~~ 303 (830)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|+..+. ++.|.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 047408 304 FNNTLLDMYSKCGDLDGAIRVFEKMGE----RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACA 379 (830)
Q Consensus 304 ~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 379 (830)
+||+||++|++.|++++|.++|++|.+ ||.++||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999964 7999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhc
Q 047408 380 CDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKC 416 (830)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 416 (830)
+.|++++|.+++++|.+.|..|+..+|+.|++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4.1e-24 Score=234.58 Aligned_cols=375 Identities=14% Similarity=0.104 Sum_probs=250.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC
Q 047408 239 ISGYIANGVAEKGLEVFKEMLNLGFNVDLAT-MVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGD 317 (830)
Q Consensus 239 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 317 (830)
...+.+.|++++|++.|.++.+. .|+... +..+...+...|+++.+...+..+++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45567788999999998887764 344332 3233333444555555555554444432 2233444444455555555
Q ss_pred hHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCcchhhhhHHHHHHh
Q 047408 318 LDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGLLEIGKDVHDYIKE 396 (830)
Q Consensus 318 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 396 (830)
+++|.+.|+ ++.+. .|+. .++..+..++...|++++|.+.+..+++
T Consensus 83 ~~~A~~~~~-------------------------------~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 83 LQEAIEHYR-------------------------------HALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHH-------------------------------HHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------HHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554 44432 2322 2344444444444444444444444444
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHH
Q 047408 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALER 476 (830)
Q Consensus 397 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~ 476 (830)
.. +.+..++..+...|.+.|++++|.+.|+++...+ +.+..++..+...+...|++++
T Consensus 130 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---------------------PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHTTTCHHH
T ss_pred hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 32 2223344445555555555555555554443221 1122334444444455555555
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 477 GREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 477 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
|...+..+++.. +.+...+..+...|.+.|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 265 (388)
T 1w3b_A 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE- 265 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 555555555543 3456778888899999999999999998654 44678899999999999999999999999998
Q ss_pred CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 047408 554 GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIW 630 (830)
Q Consensus 554 g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 630 (830)
..|+. .++..+..++.+.|++++|.+.|+.+... .+++...+..++.++.+.|++++|.+.++++ ...| +..+|
T Consensus 266 -~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 266 -LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp -TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45654 47888889999999999999999998753 2335788999999999999999999999987 4555 47889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
..+...+...|++++|...++++++++|+++..|..++.+|...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=8.6e-24 Score=231.99 Aligned_cols=352 Identities=14% Similarity=0.065 Sum_probs=302.4
Q ss_pred HHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcc
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLL 384 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 384 (830)
+...+.+.|++++|.+.|+.+.. | +...+..+...+.+.|++++|...++...+. -+.+..++..+...+...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 34556678999999999987643 4 4556777788889999999999999988775 245667899999999999999
Q ss_pred hhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcc-cccc
Q 047408 385 EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGV-TMAC 463 (830)
Q Consensus 385 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~-t~~~ 463 (830)
++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+++... .|+.. .+..
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------------~p~~~~~~~~ 140 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----------------------NPDLYCVRSD 140 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----------------------CTTCTHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCcHHHHHH
Confidence 99999999999875 445668999999999999999999999876543 24443 4455
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG 540 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~ 540 (830)
+...+...|++++|.+.+..+++.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 6667778899999999999999875 4568899999999999999999999999875 44667899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 047408 541 CDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 541 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
++|+..|++... +.|+ ..++..+..++...|++++|.+.|+.+.. +.|+ ...|..++.+|.+.|++++|.+.+
T Consensus 220 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 220 DRAVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp THHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988 4675 45788899999999999999999999874 4554 678999999999999999999999
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 619 EMM-PV-APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 619 ~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++ .. +++..+|..+...+...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 987 23 346889999999999999999999999999999999999999999999999999999999998875
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.8e-22 Score=223.32 Aligned_cols=318 Identities=11% Similarity=0.035 Sum_probs=239.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHH
Q 047408 333 VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDM 412 (830)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 412 (830)
...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3445555555555566666666665555431 2234445555555555666666666666655554 3346677778888
Q ss_pred HHhcCChHHHHHHHhcCCCCCc------hhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHH
Q 047408 413 YAKCGSMADAESVFNQMPVKDI------VSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILR 486 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~m~~~~~------~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 486 (830)
|.+.|++++|.+.|+++...+. ..|..++..... ..+......+...|++++|...+..+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------QRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887765432 233322211000 0011223446778999999999999988
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF- 562 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~- 562 (830)
.. +.+..++..+..+|.++|++++|.+.|+++. ..+..+|+.+...|...|++++|++.|+++.. ..|+....
T Consensus 172 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~ 248 (450)
T 2y4t_A 172 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCF 248 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHH
Confidence 65 5678899999999999999999999999875 45789999999999999999999999999997 56776653
Q ss_pred HHH------------HHHHHccCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047408 563 ISV------------LYACSHSGLVDEGWRFFNMMRYECNIEPK-----LEHYACMVDLLSRTGNLSEAYRFIEMM-PVA 624 (830)
Q Consensus 563 ~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 624 (830)
..+ ..+|.+.|++++|..+|+.+.. +.|+ ..+|.+++.+|.+.|++++|++.++++ ...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333 6889999999999999999985 3454 458999999999999999999999987 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 625 P-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 625 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
| +..+|..+..+|...|++++|...++++++++|+++..+..++.+
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 5 689999999999999999999999999999999999999999843
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.8e-21 Score=215.89 Aligned_cols=433 Identities=11% Similarity=-0.008 Sum_probs=304.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMY 312 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y 312 (830)
..|......+.+.|++++|++.|+++.... ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 346667788889999999999999998864 788888888888888888888888888887764 34556777788888
Q ss_pred hcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhh
Q 047408 313 SKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKD 389 (830)
Q Consensus 313 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 389 (830)
.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888877643 23334444444444433333333333332222222222211111110111111111111
Q ss_pred HHHHHHhhcC---------CCchhhHHHHHHHHHh---cCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC---
Q 047408 390 VHDYIKENDM---------QSSLYVSNALMDMYAK---CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF--- 454 (830)
Q Consensus 390 ~~~~~~~~g~---------~~~~~~~~~Li~~y~k---~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~--- 454 (830)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+.......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~~~~~ 229 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR--------------LFEEQLDKNNED 229 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH--------------HHHHHTTTSTTC
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH--------------HhhhhhccCccc
Confidence 1111111100 2234445445555554 8999999999887543 111110000
Q ss_pred ----CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhH
Q 047408 455 ----EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISW 527 (830)
Q Consensus 455 ----~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~ 527 (830)
+.+..++..+...+...|++++|...+..+++.... ..++..+...|.+.|++++|...|+++. ..+...|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 307 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH
Confidence 112345666777788899999999999999987643 8889999999999999999999999764 3467889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLL 605 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l 605 (830)
..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+... .| +...+..+...|
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEIL 382 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHH
Confidence 99999999999999999999999984 454 457888889999999999999999998754 34 467889999999
Q ss_pred HhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 606 SRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRI---HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
.+.|++++|.+.++++ |..|+ ..+|..+...+.. .|++++|...+++++++.|+++..+..++.+|...
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999999999887 33333 3489999999999 99999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHh
Q 047408 675 EKWEEVKKLREKISR 689 (830)
Q Consensus 675 g~~~~A~~~~~~m~~ 689 (830)
|++++|.+.+++..+
T Consensus 463 g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 463 EDIDEAITLFEESAD 477 (514)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988875
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=8.5e-20 Score=207.72 Aligned_cols=437 Identities=11% Similarity=-0.007 Sum_probs=273.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHH
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISG 241 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~ 241 (830)
.|..+...+.+.|++++|+..|+++.... ||...+..+..++...| +.++|...|++.. +.+..+|..+...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVG---DLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHh---hHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 34555566666777777777777766654 56666666666666666 4666666666543 3456788888899
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH---HHHHhhcCCCh
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT---LLDMYSKCGDL 318 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~---Li~~y~k~g~~ 318 (830)
|.+.|++++|+..|+++...+ +++......++..+..........+..+.+.+.+..++....+. ...........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999988765 23444444444433322211111111111111110000000000 00000011111
Q ss_pred HHHHHHHhhcC---------CC-CeehHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCCCC--------cchHH
Q 047408 319 DGAIRVFEKMG---------ER-SVVSWTSMIAGYAR---EGVFDGAIRLFRGMVR-----EGIEPD--------VYAIT 372 (830)
Q Consensus 319 ~~A~~~f~~m~---------~~-d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~pd--------~~t~~ 372 (830)
..+...+.... .| +...|......+.. .|++++|+.+|+++.. ..-.|+ ..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11111111111 11 12333334444443 6778888888877766 211222 22344
Q ss_pred HHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 047408 373 SILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQ 452 (830)
Q Consensus 373 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~ 452 (830)
.+...+...|+++.|...+..+++.... ..++..+...|.+.|++++|...|+..
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~----------------------- 296 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKA----------------------- 296 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHH-----------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------------
Confidence 4444555555666666655555554422 455555555555555555555555443
Q ss_pred CCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHH
Q 047408 453 NFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTI 529 (830)
Q Consensus 453 ~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~ 529 (830)
++.. +.+..++..+...|.+.|++++|...|++.. ..+...|..
T Consensus 297 --------------------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 297 --------------------------------LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp --------------------------------HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred --------------------------------hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 3322 3355677788888888999999998888753 446778899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHH
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDL 604 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~ 604 (830)
+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.++|+.+.....-.|. ...+..+...
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999874 444 457888888999999999999999988754322232 3388999999
Q ss_pred HHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 605 LSR---TGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 605 l~r---~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+..+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999 99999999999886 3344 578899999999999999999999999999999988776665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.8e-19 Score=206.39 Aligned_cols=426 Identities=12% Similarity=0.052 Sum_probs=306.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDM 311 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~ 311 (830)
...|..+...+.+.|++++|++.|+++.... +.+...+..+..++...|+++.|.+.+..+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888999999999999999998753 2356677778888888999999999999888875 4466777888899
Q ss_pred hhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCcchHHHHHHHhhccCcch
Q 047408 312 YSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVRE------GIEPDVYAITSILHACACDGLLE 385 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~ 385 (830)
|.+.|+.++|.+.|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+ ...+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChH
Confidence 999999999999997543 22223344455666677778899999888653 1233333333322 222222
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhc--------CChHHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHhCC
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKC--------GSMADAESVFNQMPVKDIV---SWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~--------g~~~~A~~~f~~m~~~~~~---~~n~~i~al~~f~~m~~~~ 454 (830)
.+...+....... .........+...|... |++++|..+|+++.+.+.- .|..+
T Consensus 178 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~-------------- 242 (537)
T 3fp2_A 178 LEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA-------------- 242 (537)
T ss_dssp HHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH--------------
T ss_pred HHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH--------------
Confidence 2222221111110 11111334444443322 4677777777776554321 00000
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMI 531 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li 531 (830)
..++..+...+...|++++|...+..+++.. |+..++..+...|.+.|++++|...|+++. ..+..+|..+.
T Consensus 243 ---~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 243 ---ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1134445556677889999999999999875 457888999999999999999999999764 45678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
..|...|++++|++.|++..+. .|+ ...+..+...+...|++++|.++|+.+... .| +...+..+...|.+.|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999984 455 457888889999999999999999998754 34 4678899999999999
Q ss_pred CHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 610 NLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIH----------HEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 610 ~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
++++|.+.++++ |..++ ...+..+...+... |++++|...++++++.+|+++..+..++.+|
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999886 21121 22344455667777 9999999999999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHh
Q 047408 672 AEAEKWEEVKKLREKISR 689 (830)
Q Consensus 672 ~~~g~~~~A~~~~~~m~~ 689 (830)
...|++++|.+.++...+
T Consensus 473 ~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 999999999999998875
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=7.3e-19 Score=196.52 Aligned_cols=297 Identities=13% Similarity=0.066 Sum_probs=250.4
Q ss_pred CCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHH
Q 047408 366 PDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALD 445 (830)
Q Consensus 366 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~ 445 (830)
.+...+..+...+...|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------------ 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 345667778888999999999999999999875 5578899999999999999999999998875443
Q ss_pred HHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch---hHHhHH------------HHHHHhcCCHH
Q 047408 446 LFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR---NVANAI------------VDMYVKCGVLV 510 (830)
Q Consensus 446 ~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~L------------i~~y~k~g~~~ 510 (830)
+.+..++..+..++...|++++|.+.+..+.+.. +.+. ..+..+ ...|.+.|+++
T Consensus 91 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 91 ---------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 2345567778888899999999999999998754 3344 555555 44499999999
Q ss_pred HHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 047408 511 LARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 511 ~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 587 (830)
+|...|+++. ..+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|..+|+.+..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999865 4578899999999999999999999999998842 33556889999999999999999999999973
Q ss_pred hcCCCCC-cchHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 047408 588 ECNIEPK-LEHYACM------------VDLLSRTGNLSEAYRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 588 ~~~~~p~-~~~y~~l------------v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
+.|+ ...+..+ +..+.+.|++++|.+.++++ ...|+ ...|..+...+...|++++|+.
T Consensus 240 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 ---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4565 3334444 88999999999999999987 34454 3478888899999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.++++++++|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=8.1e-18 Score=192.62 Aligned_cols=205 Identities=10% Similarity=0.005 Sum_probs=153.0
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGY 534 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~ 534 (830)
..++..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3344444455555566666666666665544 3456778888888888899998888888764 34567888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhc-
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRT- 608 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~- 608 (830)
...|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.|+.+.....-.+. ...+..+..+|.+.
T Consensus 355 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999884 4554 47778888899999999999999887643221121 22244556777777
Q ss_pred ---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 609 ---------GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 609 ---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
|++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|+++....
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999987 3344 5788999999999999999999999999999999876544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=6.3e-17 Score=174.25 Aligned_cols=329 Identities=13% Similarity=0.062 Sum_probs=224.9
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHH
Q 047408 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMY 413 (830)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 413 (830)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 356666677777777777777777776642 2234556666667777777777777777777664 34567788889999
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
.+.|++++|...|++....+...- +.... ....+.+.. .
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~-------------------~~~~~------~~~l~~~~~----------------~ 120 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQ-------------------EEKEA------ESQLVKADE----------------M 120 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHH-------------------HHHHH------HHHHHHHHH----------------H
T ss_pred HHcCChHHHHHHHHHHHhcCCccc-------------------ChHHH------HHHHHHHHH----------------H
Confidence 999999999999988755432000 10000 000000000 1
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYAC 569 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~ 569 (830)
.....+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 112334556677777777777777653 345566777777777777777777777777763 343 34566666777
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCCc-chH------------HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPKL-EHY------------ACMVDLLSRTGNLSEAYRFIEMM-PVAPD-A----TIW 630 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y------------~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~----~~~ 630 (830)
...|++++|.+.|+..... .|+. ..+ ..++..+.+.|++++|.+.++++ ...|+ . ..|
T Consensus 199 ~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 7777777777777776632 3332 212 13367788999999999999886 33343 3 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEE
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIF 710 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f 710 (830)
..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------- 334 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------- 334 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------
Confidence 56777889999999999999999999999999999999999999999999999988874
Q ss_pred EeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 711 VAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 711 ~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
..|...++...|.++...+++
T Consensus 335 -----~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 335 -----HNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -----TCTTCHHHHHHHHHHHHHHHH
T ss_pred -----cCCCChHHHHHHHHHHHHHHH
Confidence 346666777777777766654
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.9e-18 Score=184.55 Aligned_cols=304 Identities=15% Similarity=0.158 Sum_probs=151.1
Q ss_pred hcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHH
Q 047408 313 SKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHD 392 (830)
Q Consensus 313 ~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 392 (830)
-++|++++|.++++++..|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37799999999999997665 999999999999999999999976 3688899999999999999999999888
Q ss_pred HHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchh
Q 047408 393 YIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLA 472 (830)
Q Consensus 393 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~ 472 (830)
...+. .+++.+.+.|+.+|.|+|+++++.++++ .|+..++..+...|...|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------------------------~pn~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---------------------------GPNNAHIQQVGDRCYDEK 136 (449)
T ss_dssp -------------------------CHHHHTTTTT---------------------------CC----------------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------------------------CCcHHHHHHHHHHHHHcC
Confidence 88774 4567889999999999999999998875 266779999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.++.|+..+..+ ..|..|++.|.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+.
T Consensus 137 ~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~- 204 (449)
T 1b89_A 137 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV- 204 (449)
T ss_dssp CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-
T ss_pred CHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-
Confidence 999999999866 478999999999999999999999983 89999999999999999999966655432
Q ss_pred cCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh--cCCHHHHHHHHHh-CCCCC---
Q 047408 553 AGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR--TGNLSEAYRFIEM-MPVAP--- 625 (830)
Q Consensus 553 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r--~g~~~eA~~~~~~-m~~~p--- 625 (830)
+.|+. ...++..|.+.|.++++..+++... ++.+. ...|+.|.-+|++ -|++.|.+++|.+ +.++|
T Consensus 205 --~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 205 --VHADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp --TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHH
T ss_pred --hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHH
Confidence 45555 4467888999999999999998876 56553 5677888777775 5678888887754 34444
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------CCCCcchHHHHHHHHh
Q 047408 626 ---DATIWGSLLCGCRIHHEVKLAEKVAEHVFEL------------EPDNTGYYVLLANVYA 672 (830)
Q Consensus 626 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------------~p~~~~~~~~l~~~y~ 672 (830)
+...|.-+...|...++++.|....-+-... .|.|...|...++-|.
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 4568999999999999999887754333222 4666777766666665
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=1.8e-16 Score=170.72 Aligned_cols=310 Identities=12% Similarity=0.046 Sum_probs=222.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhc
Q 047408 304 FNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACAC 380 (830)
Q Consensus 304 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 380 (830)
.+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. +-+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 344555666666777777777766532 245566667777777777777777777776542 1134455666666677
Q ss_pred cCcchhhhhHHHHHHhhcCC--CchhhHHHH------------HHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 047408 381 DGLLEIGKDVHDYIKENDMQ--SSLYVSNAL------------MDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDL 446 (830)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~~--~~~~~~~~L------------i~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~ 446 (830)
.|++++|...+..+.+.... .+..++..+ ...|...|++++|...|
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~-------------------- 143 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL-------------------- 143 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH--------------------
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH--------------------
Confidence 77777777777776655310 233333333 34445555555555544
Q ss_pred HHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCC
Q 047408 447 FVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKD 523 (830)
Q Consensus 447 f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d 523 (830)
..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+
T Consensus 144 -----------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 187 (359)
T 3ieg_A 144 -----------------------------------DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187 (359)
T ss_dssp -----------------------------------HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC
T ss_pred -----------------------------------HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4444433 3456778888899999999999999998764 446
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HH------------HHHHHHHccCCHHHHHHHHHHhHhhcC
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FI------------SVLYACSHSGLVDEGWRFFNMMRYECN 590 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~ 590 (830)
...|..+...|...|++++|++.|++..+ ..|+... +. .+...+.+.|++++|...++.+...
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 263 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-- 263 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 78899999999999999999999999988 4555443 22 2355688999999999999998754
Q ss_pred CCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 591 IEPKL-----EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 591 ~~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..
T Consensus 264 -~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 264 -EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred -CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 3442 33556889999999999999999987 3445 67899999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhc
Q 047408 664 YVLLANVYAEAE 675 (830)
Q Consensus 664 ~~~l~~~y~~~g 675 (830)
+..|..++...+
T Consensus 343 ~~~l~~~~~~~~ 354 (359)
T 3ieg_A 343 REGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.6e-16 Score=166.28 Aligned_cols=287 Identities=9% Similarity=-0.023 Sum_probs=213.5
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHH
Q 047408 331 RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALM 410 (830)
Q Consensus 331 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 410 (830)
.+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|++++|..++..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355667777888888888888888888887653 2234455556667777788888888887777764 34566777777
Q ss_pred HHHHhcC-ChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCC
Q 047408 411 DMYAKCG-SMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGI 489 (830)
Q Consensus 411 ~~y~k~g-~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 489 (830)
..|...| ++++|...|++....+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------------------------- 121 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-------------------------------------------------------- 121 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--------------------------------------------------------
Confidence 7777777 7777777776654332
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISV 565 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~l 565 (830)
+.+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+. .|+ ...+..+
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l 199 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEV 199 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 2345566777777888888888888887654 334567777888888888888888888888773 444 3467777
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcC-------CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECN-------IEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCG 636 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 636 (830)
...+...|++++|..+|+.+..... .......+..+..+|.+.|++++|.+.+++. ...| +..+|..+...
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 279 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 7888888888888888887764321 1233568888999999999999999998886 3334 56788889999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-hhhcCH
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY-AEAEKW 677 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~ 677 (830)
+...|++++|...++++++++|+++..+..++..| ...|+.
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999999988 455553
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=7.7e-16 Score=163.73 Aligned_cols=262 Identities=12% Similarity=0.044 Sum_probs=218.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHH
Q 047408 400 QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGRE 479 (830)
Q Consensus 400 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~ 479 (830)
+.+..++..+...+...|++++|.++|+++...+ +.+...+..+...+...|+.++|..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---------------------p~~~~~~~~~~~~~~~~~~~~~A~~ 77 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---------------------PFHASCLPVHIGTLVELNKANELFY 77 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCTTTHHHHHHHHHHHTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCChhhHHHHHHHHHHhhhHHHHHH
Confidence 4556677778888888888888888887765443 1333444456667778888888888
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047408 480 IHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555 (830)
Q Consensus 480 i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 555 (830)
.+..+++.. +.+..++..+...|...| ++++|...|++.. ..+...|..+...|...|++++|++.|+++.+.
T Consensus 78 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 154 (330)
T 3hym_B 78 LSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-- 154 (330)
T ss_dssp HHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 888888764 456788899999999999 9999999999764 346778999999999999999999999999985
Q ss_pred CCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC---------
Q 047408 556 EPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PV--------- 623 (830)
Q Consensus 556 ~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~--------- 623 (830)
.|+ ...+..+...+...|++++|.++|+.+. .+.| +...+..+...|.+.|++++|.+.+++. ..
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 444 4567778889999999999999999987 3445 4678899999999999999999999876 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 624 -APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 624 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+.+..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23457899999999999999999999999999999999999999999999999999999987654
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=8e-13 Score=156.55 Aligned_cols=532 Identities=11% Similarity=0.065 Sum_probs=319.0
Q ss_pred hHHHHHHHhcCChHHHHHHHHHhhcCCCCh-----hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHH
Q 047408 67 NAEIGRFCEVGNLEKAMEVLYSSEKSKIDT-----KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFM 141 (830)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~ 141 (830)
...+.+|...|.+.+|++++++.... +.+ +.-+.++....+. +...+......+. .+....+...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA~I 1058 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIANI 1058 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHHHH
Confidence 34566777778888888888777633 221 2333444444444 4444444443332 1223445666
Q ss_pred HHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHH
Q 047408 142 FVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAH 221 (830)
Q Consensus 142 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~ 221 (830)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+-.++...| ++++|.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G---~~kEAI 1125 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG---MVKEAI 1125 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC---CHHHHH
Confidence 6777888888888887641 1122233322 567777777777754 23567777777777777 588888
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC
Q 047408 222 KLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKE 301 (830)
Q Consensus 222 ~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~ 301 (830)
..|.+. .|...|.-++..+.+.|++++|++.|..-++.. ++....+.+.-++++.++++...... + .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 888664 566777778888888888888888887666543 33333334777777777766433332 1 334
Q ss_pred chHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcc
Q 047408 302 ISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACD 381 (830)
Q Consensus 302 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 381 (830)
...+..+.+.|...|++++|..+|... ..|..+...|++.|++++|++.+++. -+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 445556778888888888888888875 37888888888888888888888776 3457777777888888
Q ss_pred CcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccc
Q 047408 382 GLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTM 461 (830)
Q Consensus 382 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~ 461 (830)
|++..|...... +..+...+..++..|.+.|.+++|..+++.....+.. ....+|.
T Consensus 1264 ~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-------------------H~gmftE 1319 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-------------------HMGMFTE 1319 (1630)
T ss_pred hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-------------------HhHHHHH
Confidence 887777765443 2334556678899999999999999999876544321 1222333
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHhCCC------CchhHHhHHHHHHHhcCCHHHHHHHh--------h-----hC--C
Q 047408 462 ACILPACASLAALERGREIHGYILRHGIS------ADRNVANAIVDMYVKCGVLVLARSLF--------D-----MI--P 520 (830)
Q Consensus 462 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~------~~~~~~~~Li~~y~k~g~~~~A~~~f--------~-----~m--~ 520 (830)
...+-+-.+.+++.+..+.|..-+ .++ .+...|.-++-.|.+-|+++.|.... + .. .
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k 1397 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 1397 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc
Confidence 444444455666666666554322 222 25678889999999999999988322 2 11 1
Q ss_pred CCChhhHHHHHHHHHhcC---------------ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHh
Q 047408 521 AKDLISWTIMIAGYGMHG---------------FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMM 585 (830)
Q Consensus 521 ~~d~~~~~~li~~~~~~g---------------~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 585 (830)
..|+..|...+.-|..++ +.+++.++|.+. |.-|-..-|..-+. -.+...+.+|.. +.|
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq-~~n~~~Vneal~--el~ 1471 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQ-NHNNKSVNESLN--NLF 1471 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHH-HhcchhhhHHHH--HHh
Confidence 336677777777777555 555555555421 11121111111111 001111111110 001
Q ss_pred HhhcC-------------C---------CC-CcchHHHH-HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047408 586 RYECN-------------I---------EP-KLEHYACM-VDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 586 ~~~~~-------------~---------~p-~~~~y~~l-v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 641 (830)
..+-+ + +- ...-+--+ ..+|.+.|+|++|.+++++.+.. .--+.+....|
T Consensus 1472 ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l~------~dAm~~a~~S~ 1545 (1630)
T 1xi4_A 1472 ITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLY------KDAMQYASESK 1545 (1630)
T ss_pred cCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccCH------HHHHHHHHHcC
Confidence 00000 0 00 00001112 23455568888888888877643 33356667788
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
+.+.++.++.-..+. .+...|+..--.+...=+.|-+.++
T Consensus 1546 d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1546 DTELAEELLQWFLQE--EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred CHHHHHHHHHHHHhc--CChhHHHHHHHHHhccCCchHHHHH
Confidence 888888877776666 4455666665666666677766664
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=4.2e-13 Score=158.89 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=224.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHH
Q 047408 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAI 353 (830)
Q Consensus 274 l~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 353 (830)
-..|...|.+++|.+++.... ......+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 334455555566655555531 111111222 225667777777777653 3456778888888888888888
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 047408 354 RLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKD 433 (830)
Q Consensus 354 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 433 (830)
+.|.+. -|...|..+..+|.+.|+++++.+.+....+.. ++..+.+.++..|+|.+++++.....+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~------ 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN------ 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh------
Confidence 888553 356667778888888888888888887777654 444445568888888888775443321
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHH
Q 047408 434 IVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLAR 513 (830)
Q Consensus 434 ~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 513 (830)
.|+...+..+...|...|++++|..++..+ ..|..+...|.++|++++|.
T Consensus 1192 ---------------------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1192 ---------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred ---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 244445556777888888888888888774 37788888888999999999
Q ss_pred HHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 047408 514 SLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 514 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 593 (830)
+.+++. .+..+|..+-.+|...|+++.|...... +..+...+..++..|.+.|.+++|+.+++... ++.|
T Consensus 1242 EaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~Ler 1311 (1630)
T 1xi4_A 1242 DGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLER 1311 (1630)
T ss_pred HHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCh
Confidence 888876 4667888888888888888888776553 22344445577777888888888888887654 5554
Q ss_pred C-cchHHHHHHHHHh--cCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--------
Q 047408 594 K-LEHYACMVDLLSR--TGNLSEAYRFIEMM-PVAP------DATIWGSLLCGCRIHHEVKLAEKVAEHVFE-------- 655 (830)
Q Consensus 594 ~-~~~y~~lv~~l~r--~g~~~eA~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------- 655 (830)
. ...|+-|..+|.+ -+++.|+.++|.+- .++| +...|.-+...|.+.|+++.|....-.-.+
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~F 1391 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF 1391 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHH
Confidence 3 4455556666654 45677777766543 4433 356788888888888888887732211111
Q ss_pred ----cCCCCcchHHHHHHHHhhhc
Q 047408 656 ----LEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 656 ----l~p~~~~~~~~l~~~y~~~g 675 (830)
..+.|+..|...++-|....
T Consensus 1392 k~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1392 KDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccccHHHHHHHHHHHHhhC
Confidence 24666777777777776665
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.69 E-value=2.8e-16 Score=170.21 Aligned_cols=147 Identities=10% Similarity=-0.004 Sum_probs=127.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPD---EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
+...|++++|++.|+++.+. .|+ ..++..+...+...|++++|..+|+.+... .| +...|..++.+|.+.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcC
Confidence 33889999999999999884 455 567888889999999999999999988743 45 4678899999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------cchHHHHHHHHhhhcC
Q 047408 610 NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-----------TGYYVLLANVYAEAEK 676 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~ 676 (830)
++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +..|..++.+|...|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999986 3445 57889999999999999999999999999999887 7889999999999999
Q ss_pred HHHHHHHHH
Q 047408 677 WEEVKKLRE 685 (830)
Q Consensus 677 ~~~A~~~~~ 685 (830)
+++|..+.+
T Consensus 346 ~~~A~~~~~ 354 (368)
T 1fch_A 346 SDAYGAADA 354 (368)
T ss_dssp GGGHHHHHT
T ss_pred hHhHHHhHH
Confidence 999998865
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.2e-14 Score=165.98 Aligned_cols=409 Identities=11% Similarity=0.073 Sum_probs=254.8
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH
Q 047408 229 DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV-DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT 307 (830)
Q Consensus 229 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 307 (830)
+.|...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|+.+.++.++..+++.. |++.+|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 346778888888 57889999999999998864 34 33445555555666666666666666666543 34445554
Q ss_pred HHH-HhhcCCChHHHHH----HHhhcC-----C-CCeehHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCC
Q 047408 308 LLD-MYSKCGDLDGAIR----VFEKMG-----E-RSVVSWTSMIAGYAR---------EGVFDGAIRLFRGMVREGIEPD 367 (830)
Q Consensus 308 Li~-~y~k~g~~~~A~~----~f~~m~-----~-~d~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd 367 (830)
++. .....|+.+.|++ +|+... . .+...|...+....+ .|++++|..+|++.+.. |+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~ 161 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PM 161 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hh
Confidence 443 2223455555443 444321 1 233455555554433 45566666666665541 22
Q ss_pred cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC------CCC-------C-
Q 047408 368 VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM------PVK-------D- 433 (830)
Q Consensus 368 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m------~~~-------~- 433 (830)
.. ...+...+.. ++.. .| ..+...++. .+.++++.|..++..+ .++ +
T Consensus 162 ~~-~~~~~~~~~~---~e~~---------~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 162 IN-IEQLWRDYNK---YEEG---------IN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp TT-HHHHHHHHHH---HHHH---------HC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred hh-HHHHHHHHHH---HHHh---------hc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 11 0011111100 0000 00 000011110 1233445555444431 110 0
Q ss_pred -------chhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhh----HHHHHHHHHHHHHhCCCCchhHHhHHHHH
Q 047408 434 -------IVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAA----LERGREIHGYILRHGISADRNVANAIVDM 502 (830)
Q Consensus 434 -------~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~----~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 502 (830)
...|...+ ..... .|. ..++ .+.+..++..+++.. +.+..+|..++..
T Consensus 223 ~~~~~~~~~~w~~~~-------~~e~~-~~~------------~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYI-------QWEKS-NPL------------RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQY 281 (530)
T ss_dssp -CCHHHHHHHHHHHH-------HHHHH-CSS------------CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH-------HHHHc-CCc------------cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 01111111 00000 000 0111 235667788887763 5678888888888
Q ss_pred HHh-------cCCHH-------HHHHHhhhCCC---C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHH
Q 047408 503 YVK-------CGVLV-------LARSLFDMIPA---K-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE--VSF 562 (830)
Q Consensus 503 y~k-------~g~~~-------~A~~~f~~m~~---~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~ 562 (830)
+.+ .|+++ +|..+|++... | +...|..++..+.+.|++++|.++|+++++ +.|+. ..|
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~ 359 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHH
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHH
Confidence 886 79987 89999997652 3 578999999999999999999999999998 56764 368
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDL-LSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~-l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
......+.+.|.+++|+++|+...+ ..|. ...|...+.+ +...|+.++|.++|++. ...| +..+|..++....
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8888888899999999999999874 3443 2333333322 34689999999999976 3345 5789999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcc----hHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTG----YYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
..|+.+.|+.+++++++..|.++. .+...+......|+.+++.++.+.+.+.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998877665 6777788888899999999998887653
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=8.8e-16 Score=164.13 Aligned_cols=372 Identities=13% Similarity=0.110 Sum_probs=172.8
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 216 ~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|+++++...+..+.+
T Consensus 18 ~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 18 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5888999999986664 899999999999999999999965 26778999999999999999999998888777
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSIL 375 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 375 (830)
. .+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|.+++|..+|..+ ..|..+.
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 4 45577889999999999999998888864 77789999999999999999999999976 4788899
Q ss_pred HHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCC
Q 047408 376 HACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFE 455 (830)
Q Consensus 376 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~ 455 (830)
.++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+.. .
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~-----------------------~ 206 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----------------------H 206 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT-----------------------C
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh-----------------------C
Confidence 9999999999999998887 3788999999999999999999777665431 2
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc--CCHHHHHHHhhhCC---C-----CChh
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC--GVLVLARSLFDMIP---A-----KDLI 525 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~m~---~-----~d~~ 525 (830)
|+. ...++..+.+.|.++++..+++..+... +.....++-|.-.|+|- +++.+..+.|..-. + .+..
T Consensus 207 ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred Hhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 333 2246677888899999999888877554 45677888888888775 57888888887432 1 2567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHhHhh------cCCCCCcc
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD---EVSFISVLYACSHSGLVDEGWRFFNMMRYE------CNIEPKLE 596 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------~~~~p~~~ 596 (830)
.|.-+...|.+.++++.|... |.+ ..|+ ...|.-++.--.....+-+|..++-.-... ..+.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t---m~~--h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld 358 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT---MMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLD 358 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH---HHH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhhchHHHHHHH---HHh--CChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 899999999999999999874 444 2333 334444443333333333444443211000 01122222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAE 647 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 647 (830)
| +-.|..+.+.|++.-+..+++...-.-+..+=.+|-..+....|++.-+
T Consensus 359 ~-~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 359 H-TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp H-HHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred c-HHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 2 3344455555555555454444432333344444545555555555433
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.2e-17 Score=185.65 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=115.3
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIP-------AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF 562 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~ 562 (830)
..-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446789999999999999999999997653 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 563 ISVLYACSHSGL-VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 563 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+++|.++++.|. .++|.++|++|..+ |+.||..+|+|+++...|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 57899999999866 99999999999998888876666665554433
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=2.9e-13 Score=152.92 Aligned_cols=372 Identities=10% Similarity=-0.028 Sum_probs=229.8
Q ss_pred CcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCCc
Q 047408 231 DVVSWNCMISGYIA----NGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCAN----CGALMFGRAVHAFALKACFSKEI 302 (830)
Q Consensus 231 ~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~~~~l~~~~~~~g~~~~~ 302 (830)
|..++..+-..|.. .+++++|++.|++..+.| +...+..+-..+.. .++.+.|...+....+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555556666666 677777777777776653 23333333333333 444555555555444432 23
Q ss_pred hHHHHHHHHhhc----CCChHHHHHHHhhcCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcchHHH
Q 047408 303 SFNNTLLDMYSK----CGDLDGAIRVFEKMGER-SVVSWTSMIAGYAR----EGVFDGAIRLFRGMVREGIEPDVYAITS 373 (830)
Q Consensus 303 ~~~~~Li~~y~k----~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 373 (830)
.....|-.+|.. .++.++|.+.|++..+. +...+..+...|.. .++.++|++.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 333444444444 45555555555544332 33344444444444 445555555555554432 2233333
Q ss_pred HHHHhhc----cCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 047408 374 ILHACAC----DGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVA 449 (830)
Q Consensus 374 ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~ 449 (830)
+-..+.. .++.++|.+.+....+.| +...+..|..+|...
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g--------------------------------- 232 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG--------------------------------- 232 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC---------------------------------
Confidence 3333333 444444444444444433 233344444444430
Q ss_pred HHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCCC-CCh
Q 047408 450 MLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIPA-KDL 524 (830)
Q Consensus 450 m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~ 524 (830)
....++.++|.+.+....+.| +......|..+|.+ .++.++|...|++..+ .+.
T Consensus 233 ------------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 233 ------------------IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp ------------------SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred ------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 001344555555555554433 34455667777777 7889999999987653 466
Q ss_pred hhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC---CHHHHHHHHHHhHhhcCCCCCcc
Q 047408 525 ISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG---LVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 525 ~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
..+..+...|... ++.++|++.|++..+.| +...+..+...+...| +.++|.++|+...+. .+..
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~ 364 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKA 364 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHH
Confidence 7778888888877 89999999999998864 3455666666666656 788999999988743 3567
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCC---CcchHH
Q 047408 597 HYACMVDLLSR----TGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPD---NTGYYV 665 (830)
Q Consensus 597 ~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~---~~~~~~ 665 (830)
.+..|..+|.. .+++++|.+.+++.--..++..+..|...+.. .+|.++|...++++.+.+|+ ++....
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 88888999988 89999999999987333467788888888887 89999999999999999854 777778
Q ss_pred HHHHHHhhhc
Q 047408 666 LLANVYAEAE 675 (830)
Q Consensus 666 ~l~~~y~~~g 675 (830)
.|+.++....
T Consensus 445 ~l~~~~~~~~ 454 (490)
T 2xm6_A 445 TEKKLTAKQL 454 (490)
T ss_dssp HHTTSCHHHH
T ss_pred HHHhcCHhHH
Confidence 8888777543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=4e-15 Score=161.21 Aligned_cols=230 Identities=10% Similarity=-0.028 Sum_probs=193.0
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAG 533 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~ 533 (830)
+...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456667777888889999999999888875 5678899999999999999999999999865 4567899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhH-----------HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEVS-----------FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-----------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
|...|++++|++.|+++.+ +.|+... +..+...+...|++++|.++|+.+.....-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 3455432 22346788999999999999999986533333578899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
.+|.+.|++++|++.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3444 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047408 681 KKLREKISR 689 (830)
Q Consensus 681 ~~~~~~m~~ 689 (830)
.+.++++.+
T Consensus 301 ~~~~~~al~ 309 (365)
T 4eqf_A 301 VSNFLTALS 309 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=1.6e-14 Score=150.97 Aligned_cols=245 Identities=8% Similarity=-0.024 Sum_probs=192.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHH
Q 047408 405 VSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYI 484 (830)
Q Consensus 405 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 484 (830)
..-.+..+|...|++++|...++.. + .|+..++..+...+...++.+.+.+.+..+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~---~---------------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS---S---------------------APELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT---S---------------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc---C---------------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3344667788888888887766542 1 244555666666677777788888888888
Q ss_pred HHhCC-CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-
Q 047408 485 LRHGI-SADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF- 562 (830)
Q Consensus 485 ~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~- 562 (830)
++.+. +.+..++..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+. .|+....
T Consensus 92 l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~ 167 (291)
T 3mkr_A 92 MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQ 167 (291)
T ss_dssp HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHH
Confidence 77764 44677788888999999999999999999 567889999999999999999999999999985 5775421
Q ss_pred --HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 563 --ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 563 --~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
.+.+..+...|++++|..+|+.+... .+.+...++.+..+|.+.|++++|++.+++. ...| ++.+|..++..+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 12233344569999999999999865 2346788999999999999999999999986 5556 5778999999999
Q ss_pred hcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 639 IHHEVKL-AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 639 ~~g~~~~-a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
..|+.++ +...++++++++|+++.+ .+++.+.+.++++..-
T Consensus 246 ~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9998865 678999999999998754 4567777788777653
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=183.04 Aligned_cols=131 Identities=10% Similarity=0.134 Sum_probs=117.8
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcC-------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHH
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMG-------ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAIT 372 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 372 (830)
.-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 344578999999999999999999997763 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcc-hhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 047408 373 SILHACACDGLL-EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP 430 (830)
Q Consensus 373 ~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 430 (830)
++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++.++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999999985 7899999999999999999999999998888766666666655443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=1.7e-14 Score=162.19 Aligned_cols=363 Identities=12% Similarity=0.010 Sum_probs=203.3
Q ss_pred chHHHHHHHHhhcCCChHHHHHHHhhcC-----------C-CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcC------
Q 047408 302 ISFNNTLLDMYSKCGDLDGAIRVFEKMG-----------E-RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREG------ 363 (830)
Q Consensus 302 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----------~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 363 (830)
...||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|...|++.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3455666666666666666666665431 1 134566666667777777777776666654310
Q ss_pred CCCC-cchHHHHHHHhhc--cCcchhhhhHHHHHHhhcCCCchhhHHHHHHHH---HhcCChHHHHHHHhcCCCCCchhH
Q 047408 364 IEPD-VYAITSILHACAC--DGLLEIGKDVHDYIKENDMQSSLYVSNALMDMY---AKCGSMADAESVFNQMPVKDIVSW 437 (830)
Q Consensus 364 ~~pd-~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y---~k~g~~~~A~~~f~~m~~~~~~~~ 437 (830)
..++ ..++.....++.. .+++++|.+.|..+++.. +.+...+..+...+ ...++.++|.+.|++..+.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---- 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---- 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC----
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC----
Confidence 0111 1223322222222 345666777776666654 22333444444332 33445555555554332111
Q ss_pred HHHHHHHHHHHHHHhCCCCCccccccchhhh----cchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHH
Q 047408 438 NTMIGALDLFVAMLQNFEPDGVTMACILPAC----ASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLAR 513 (830)
Q Consensus 438 n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 513 (830)
+.+..++..+...+ ...++.++|.+.+..+.+.. +.+..++..+...|.+.|++++|.
T Consensus 206 -----------------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 206 -----------------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp -----------------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 11222222222222 23355667777777776654 455667777888888888888888
Q ss_pred HHhhhCC---CCChhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHH
Q 047408 514 SLFDMIP---AKDLISWTIMIAGYGM-------------------HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACS 570 (830)
Q Consensus 514 ~~f~~m~---~~d~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~ 570 (830)
..|++.. ..+..+|..+...|.. .+..++|+..|++..+ ..|+.. ++..+...+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 268 ELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHH
Confidence 8887654 3345566666555432 2346788888888877 355544 6788888999
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCcc----hHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 047408 571 HSGLVDEGWRFFNMMRYECNIEPKLE----HYACMVD-LLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 571 ~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~lv~-~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 644 (830)
..|++++|.++|+.... +.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+... .+
T Consensus 346 ~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KD 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HH
T ss_pred HhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HH
Confidence 99999999999998763 334322 2233333 245789999999998876 667775444333 34
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEE
Q 047408 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWI 701 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi 701 (830)
.++.++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-.-....+|+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 456778888999999999999999999999999999999998887665544444553
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=2.8e-14 Score=154.36 Aligned_cols=249 Identities=15% Similarity=0.073 Sum_probs=159.4
Q ss_pred hhcCCChHHHHH-HHhhcCC-----C--CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCc
Q 047408 312 YSKCGDLDGAIR-VFEKMGE-----R--SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGL 383 (830)
Q Consensus 312 y~k~g~~~~A~~-~f~~m~~-----~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 383 (830)
|.-.|++++|.. .|++... | +...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8875533 1 45678899999999999999999999998763 3355677888888999999
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
+++|...+..+++.. +.+..++..+...|.+.|++++|...|+++...+ |+......
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~ 170 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT----------------------PAYAHLVT 170 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----------------------TTTGGGCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------cCcHHHHH
Confidence 999999999999886 5577889999999999999999999998765432 22211111
Q ss_pred ----------------chhhhcchhhHHHHHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCC
Q 047408 464 ----------------ILPACASLAALERGREIHGYILRHGISA-DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKD 523 (830)
Q Consensus 464 ----------------ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d 523 (830)
.+..+...|++++|...+..+++..... +..++..+...|.+.|++++|...|+++. ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 250 (368)
T 1fch_A 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250 (368)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 2333346677777777777666654221 35556666666666666666666665543 234
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..+|+.+...|...|++++|++.|+++.+. .|+ ...+..+..++.+.|++++|..+|+.+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666666666666666666666665552 333 2345555555555555555555555543
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=8.3e-16 Score=166.60 Aligned_cols=220 Identities=10% Similarity=-0.077 Sum_probs=166.8
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---C----------hhh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---D----------LIS 526 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d----------~~~ 526 (830)
++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++... + ...
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 179 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHH
Confidence 34444444445555555555555555543 345777888888899999999999888876421 1 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHH
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEP---DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMV 602 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv 602 (830)
++.+...|...|++++|++.|+++.+. .| +..++..+...+...|++++|.++|+.+... .| +...|..++
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~ 254 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLG 254 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 345588899999999999999999985 45 4668888999999999999999999998743 34 477899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CcchHHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------------NTGYYVLLA 668 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~ 668 (830)
.+|.+.|++++|++.++++ ...| +..+|..+...+...|++++|...+++++++.|+ +...+..|+
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 9999999999999999987 4455 4789999999999999999999999999999887 356789999
Q ss_pred HHHhhhcCHHHHHHHHH
Q 047408 669 NVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 669 ~~y~~~g~~~~A~~~~~ 685 (830)
.+|...|+.+.+.++.+
T Consensus 335 ~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 335 IALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHTCHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHH
Confidence 99999999999988754
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=9.4e-13 Score=150.34 Aligned_cols=374 Identities=10% Similarity=0.071 Sum_probs=239.8
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH 376 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 376 (830)
.+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.+.. .|+...+...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 34555666666 3556777777777776654 2 3445667777777777777777777776654 355444444443
Q ss_pred H-hhccCcchhhhh----HHHHHHhh-cCCC-chhhHHHHHHHHHh---------cCChHHHHHHHhcCCCCCc----hh
Q 047408 377 A-CACDGLLEIGKD----VHDYIKEN-DMQS-SLYVSNALMDMYAK---------CGSMADAESVFNQMPVKDI----VS 436 (830)
Q Consensus 377 a-~~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~Li~~y~k---------~g~~~~A~~~f~~m~~~~~----~~ 436 (830)
. ....|+.+.|++ +++..++. |..+ +..+|..++....+ .|+++.|+.+|++...... ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 2 223455555544 45444432 4332 34566666665554 6778888888877554211 11
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHH------HhC---CCCc--------hhHHhHH
Q 047408 437 WNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYIL------RHG---ISAD--------RNVANAI 499 (830)
Q Consensus 437 ~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~------~~g---~~~~--------~~~~~~L 499 (830)
|.... .|.+-. + ..+...++. ...+.+..|+.++.... +.. ++|+ ...|...
T Consensus 168 ~~~~~----~~e~~~--~---~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 168 WRDYN----KYEEGI--N---IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp HHHHH----HHHHHH--C---HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HHHHH----HHHHhh--c---hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 11111 111000 0 000000110 13455666766665532 111 2333 2455555
Q ss_pred HHHHHhc----CCH----HHHHHHhhhCC---CCChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcC
Q 047408 500 VDMYVKC----GVL----VLARSLFDMIP---AKDLISWTIMIAGYGM-------HGFGC-------DAIATFNDMRQAG 554 (830)
Q Consensus 500 i~~y~k~----g~~----~~A~~~f~~m~---~~d~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g 554 (830)
+...... ++. +.|..+|++.. ..+...|..++..+.+ .|+.+ +|.++|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~- 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST- 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-
Confidence 5443322 222 36667777654 3477899999888876 79987 999999999863
Q ss_pred CCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHH
Q 047408 555 IEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL--EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATI 629 (830)
Q Consensus 555 ~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~ 629 (830)
+.|+. ..+..++..+...|++++|..+|+.+.. +.|+. ..|..++..+.+.|++++|.++|++. ...|+ ...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 45664 4678888888999999999999999884 56653 47889999999999999999999987 33343 333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 630 WGSLLCG-CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 630 ~~~ll~~-~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
|...... +...|+.+.|..+++++++..|+++..+..++.++.+.|+.++|..+++.....+
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3332222 3468999999999999999999999999999999999999999999999988754
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=9.3e-13 Score=148.77 Aligned_cols=337 Identities=10% Similarity=-0.000 Sum_probs=237.1
Q ss_pred CCChHHHHHHHhhcCC-CCeehHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhc----cCcch
Q 047408 315 CGDLDGAIRVFEKMGE-RSVVSWTSMIAGYAR----EGVFDGAIRLFRGMVREGIEPDVYAITSILHACAC----DGLLE 385 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~ 385 (830)
.++.++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 5556666666655433 244455555555555 566666666666665543 33333344444444 45666
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHh----cCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccc
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAK----CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTM 461 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~ 461 (830)
+|...+....+.| +...+..|..+|.. .++.++|.+.|++..+.+ +...+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-----------------------~~~a~ 186 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-----------------------NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------CHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----------------------CHHHH
Confidence 6666666666554 34455566666665 566666666666543221 11122
Q ss_pred ccchhhhcc----hhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCC-CCChhhHHHHHH
Q 047408 462 ACILPACAS----LAALERGREIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIP-AKDLISWTIMIA 532 (830)
Q Consensus 462 ~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~-~~d~~~~~~li~ 532 (830)
..+...+.. .++.++|.+.+....+.| +......|..+|.. .++.++|...|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222222222 566777777777777754 56677888888887 889999999999865 446778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 533 GYGM----HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS-----GLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 533 ~~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
.|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8887 899999999999998764 444666666777776 8999999999988743 2 4567778888
Q ss_pred HHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh---
Q 047408 604 LLSRTG---NLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE--- 673 (830)
Q Consensus 604 ~l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--- 673 (830)
+|.+.| +.++|.+.+++.--..++..|..|...+.. .++.++|...++++.+.. ++..+..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888767 889999999987434678889999999888 899999999999998864 57889999999999
Q ss_pred -hcCHHHHHHHHHHHHhCCC
Q 047408 674 -AEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 674 -~g~~~~A~~~~~~m~~~g~ 692 (830)
.++.++|.+.+++..+.|.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999887553
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.5e-14 Score=153.43 Aligned_cols=258 Identities=9% Similarity=-0.089 Sum_probs=205.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIH 481 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 481 (830)
+...+..+...|.+.|++++|..+|+++...+ +.+..++..+..++...|++++|.+.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 78 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---------------------PEREEAWRSLGLTQAENEKDGLAIIAL 78 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33455667778888888888888887764432 123445556667777888888888888
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHH--------------HH-HHHhcCChHHH
Q 047408 482 GYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIM--------------IA-GYGMHGFGCDA 543 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~l--------------i~-~~~~~g~~~~A 543 (830)
..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+...+..+ .. .+...|++++|
T Consensus 79 ~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 79 NHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHH
T ss_pred HHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 8888764 4567888899999999999999999998764 2233444443 22 37788999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 047408 544 IATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM- 621 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 621 (830)
++.|+++.+.. +.+...+..+...+...|++++|.++++.+... .| +...+..+...|.+.|++++|.+.++++
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999852 234567888889999999999999999998743 34 4678899999999999999999999986
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 622 PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------------NTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 622 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
...| +..+|..+...+...|++++|...+++++++.|+ ++..+..++.+|...|++++|.++++
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444 5788999999999999999999999999999999 78899999999999999999998865
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=5.3e-14 Score=146.92 Aligned_cols=244 Identities=9% Similarity=0.016 Sum_probs=197.0
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCc--cccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 411 DMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDG--VTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 411 ~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
.-....|++..|+..++.....+ |+. .....+..++...|+.+.+...+.. .
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~----------------------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~ 60 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS----------------------PERDVERDVFLYRAYLAQRKYGVVLDEIKP----S 60 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T
T ss_pred HHHHHHHHHHHHHHHHHhcccCC----------------------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c
Confidence 34556799999999998876553 222 2334456788889999888865533 2
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AK-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFI 563 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~ 563 (830)
-+|+......+...|.+.|+.++|.+.++++. .| +...|..+...|.+.|++++|++.|++ ..+...+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHH
Confidence 35677788899999999999999999999863 24 566778888999999999999999987 34556788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHY---ACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCR 638 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y---~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~ 638 (830)
.+...+.+.|++++|.+.|+.+... .|+...+ .+.+..+...|++++|.++|+++ ..+.+..+|+.+..++.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8889999999999999999999854 4664321 23456666679999999999998 23357889999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH-HHHHHHHHHh
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE-VKKLREKISR 689 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~ 689 (830)
..|++++|+..++++++++|+++..+..++.++...|++++ +.++++++.+
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 5678777764
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=2.1e-13 Score=144.57 Aligned_cols=239 Identities=10% Similarity=-0.034 Sum_probs=140.3
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHH
Q 047408 332 SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMD 411 (830)
Q Consensus 332 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 411 (830)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|.+.+..+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33455666666777777777777777776542 2244455566666677777777777777776664 445677888888
Q ss_pred HHHhcCChHHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHhCCCCCccccccc-hh-hhcchhhHHHHHHHHHHHHH
Q 047408 412 MYAKCGSMADAESVFNQMPVKDIV---SWNTMIGALDLFVAMLQNFEPDGVTMACI-LP-ACASLAALERGREIHGYILR 486 (830)
Q Consensus 412 ~y~k~g~~~~A~~~f~~m~~~~~~---~~n~~i~al~~f~~m~~~~~pd~~t~~~l-l~-a~~~~~~~~~a~~i~~~~~~ 486 (830)
.|.+.|++++|.+.|+++...+.. .|..+.. ..|+......+ .. .+...|++++|...+..+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ-----------ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH-----------HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 899999999998888776433210 0000000 00111111111 11 36677788888888887777
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHH
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSF 562 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~ 562 (830)
.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .|+ ..++
T Consensus 167 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 243 (327)
T 3cv0_A 167 MN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVM 243 (327)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH
Confidence 64 3356666667777777777777776666543 234556666666666666666666666666553 233 3345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..+...+...|++++|.++|+.+.
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 555555555555555555555544
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.2e-13 Score=137.68 Aligned_cols=193 Identities=12% Similarity=0.026 Sum_probs=158.0
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISV 565 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~l 565 (830)
+++...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+ +.|+.. .+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4667788889999999999999999999764 44678999999999999999999999999998 567654 67788
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 047408 566 LYACSHS-----------GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGS 632 (830)
Q Consensus 566 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 632 (830)
..++... |++++|...|+...+ +.|+ ...+..+..+|.+.|++++|++.+++. .+..+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888999 999999999999874 4564 678889999999999999999999986 22277899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999886643
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=8.5e-13 Score=148.19 Aligned_cols=384 Identities=13% Similarity=0.002 Sum_probs=210.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC------
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNL-----G--FNV-DLATMVTVLSGCANCGALMFGRAVHAFALKAC------ 297 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g------ 297 (830)
...||.|...|...|++++|++.|++-.+. + ..| ...+|..+-..+...|+++.|...+..+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 446777777888888888888888765431 1 122 24466777777777788877777777665421
Q ss_pred CCC-CchHHHHHHHHhhc--CCChHHHHHHHhhcCC--C-CeehHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCc
Q 047408 298 FSK-EISFNNTLLDMYSK--CGDLDGAIRVFEKMGE--R-SVVSWTSMIAG---YAREGVFDGAIRLFRGMVREGIEPDV 368 (830)
Q Consensus 298 ~~~-~~~~~~~Li~~y~k--~g~~~~A~~~f~~m~~--~-d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~pd~ 368 (830)
..+ ...+++.+..++.+ .++.++|...|++..+ | +...+..+... +...++.++|++.|++..+. .|+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcc
Confidence 111 12334433334443 3467888888887643 3 34445544444 33457778888888887764 3443
Q ss_pred -chHHHHHHHh----hccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHH
Q 047408 369 -YAITSILHAC----ACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGA 443 (830)
Q Consensus 369 -~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~a 443 (830)
.++..+...+ ...++.++|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+.+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------- 277 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---------- 277 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----------
Confidence 3343333333 33467788888888887765 4566778888899999999999988887764332
Q ss_pred HHHHHHHHhCCCCCcc-ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--
Q 047408 444 LDLFVAMLQNFEPDGV-TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-- 520 (830)
Q Consensus 444 l~~f~~m~~~~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-- 520 (830)
|+.. ++..+...+...+ ... ... ....+.......+..+.|...|+...
T Consensus 278 ------------p~~~~~~~~lg~~y~~~~-----~~~----~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 278 ------------PNNAYLHCQIGCCYRAKV-----FQV----MNL-------RENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp ------------TTCHHHHHHHHHHHHHHH-----HHH----HHC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHH-----HHh----hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 2221 1111111110000 000 000 00001111112233566666666543
Q ss_pred -CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 521 -AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLY-ACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 521 -~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
..+..+|..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..|.... .+.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccH
Confidence 4456788888999999999999999999988853333222 1222222 3457889999999998876 4566543
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
...-. ++.+.++++.. ...| ++.+|..|...+...|++++|+..+++++++.|.+|.++.-++
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 32222 23333444332 2234 5678999999999999999999999999999999887766554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3e-13 Score=137.92 Aligned_cols=215 Identities=12% Similarity=0.004 Sum_probs=187.6
Q ss_pred cccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-C-------hhhHHHH
Q 047408 461 MACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--K-D-------LISWTIM 530 (830)
Q Consensus 461 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d-------~~~~~~l 530 (830)
+..+...+...|++++|...+..+++.. .+..++..+...|.+.|++++|...|++... | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4455667788999999999999999988 7888999999999999999999999997652 1 1 5789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 531 IAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 531 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
...|...|++++|++.|++..+ +.|+. ..+...|++++|.+.++.+.. ..| +...+..+...+.+.|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999998 45664 345667889999999999874 345 3677889999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 610 NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++..
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999987 3334 57889999999999999999999999999999999999999999999999999999999887
Q ss_pred Hh
Q 047408 688 SR 689 (830)
Q Consensus 688 ~~ 689 (830)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=2.4e-12 Score=132.75 Aligned_cols=240 Identities=10% Similarity=-0.098 Sum_probs=178.2
Q ss_pred cCcchhhhhHHHHHHhhcC---CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC
Q 047408 381 DGLLEIGKDVHDYIKENDM---QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD 457 (830)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd 457 (830)
.+++++|...+..+++... +.+..++..+...|...|++++|...|++....
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------- 72 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------------------------- 72 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------------------------
Confidence 3555555555555555421 123556677777788888888877777654221
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGY 534 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~ 534 (830)
. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|
T Consensus 73 ------------------------------~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 73 ------------------------------R-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp ------------------------------C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred ------------------------------C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 1 3356677778888888899999888888764 34678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEA 614 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 614 (830)
...|++++|++.|+++.+ ..|+.......+..+...|++++|..+++..... ..++...+ .++..+...+..++|
T Consensus 122 ~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHH
Confidence 999999999999999998 5677766666666677889999999999877643 22333444 477788888999999
Q ss_pred HHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 615 YRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 615 ~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++... .+..+...|++++|.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999886 33332 5788999999999999999999999999999987544 467888999999987764
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=1.4e-12 Score=134.36 Aligned_cols=245 Identities=13% Similarity=0.010 Sum_probs=164.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHH
Q 047408 406 SNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYIL 485 (830)
Q Consensus 406 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 485 (830)
...+...|.+.|++++|...|++..+.+ +.+...+..+...+...|++++|.+.+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK---------------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT---------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445566667777777777766654332 1223355555566667777777777777776
Q ss_pred HhCCCCc--hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 486 RHGISAD--RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 486 ~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
+.+-.++ ...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|++..+. .|+..
T Consensus 65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~ 142 (272)
T 3u4t_A 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDP 142 (272)
T ss_dssp TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCH
T ss_pred hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcH
Confidence 6331121 2346778888888888888888888654 345678888888888888888888888888773 56555
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC-----
Q 047408 561 -SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGN---LSEAYRFIEMM----PVAPD----- 626 (830)
Q Consensus 561 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~---~~eA~~~~~~m----~~~p~----- 626 (830)
.+..+...+...+++++|.+.|+.+.+ +.|+ ...+..+..++...|+ +++|.+.+++. ...|+
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 344444255556688888888888764 3454 5666677777777777 66676666654 11233
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 627 -ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 627 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
..+|..+...+...|++++|...++++++++|+++.+...+..+....+.
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 25777888889999999999999999999999998887777766655443
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=1.1e-11 Score=125.99 Aligned_cols=194 Identities=8% Similarity=-0.049 Sum_probs=167.9
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYA 568 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a 568 (830)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5667788889999999999999998764 446778999999999999999999999999885 44 45577888888
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
+...|++++|.++|+.+.. .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999875 235563 677888999999999999999999886 3344 57889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|...++++++..|++...+..++.+|...|++++|.+.++.+.+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998875
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=1.8e-11 Score=121.60 Aligned_cols=196 Identities=9% Similarity=0.019 Sum_probs=167.2
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll 566 (830)
.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .| +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 356677888899999999999999998764 446778999999999999999999999999884 44 455788888
Q ss_pred HHHHcc-CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047408 567 YACSHS-GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE 642 (830)
Q Consensus 567 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 642 (830)
..+... |++++|..+|+.+.. .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 889999 999999999999875 334444 567888999999999999999999886 3344 47888999999999999
Q ss_pred HHHHHHHHHHHhccCC-CCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 643 VKLAEKVAEHVFELEP-DNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++|...++++++..| +++..+..++.++...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999 8999999999999999999999999888764
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.36 E-value=1.4e-10 Score=129.19 Aligned_cols=342 Identities=9% Similarity=-0.025 Sum_probs=210.8
Q ss_pred HHHHHHhhcCCCh---HHHHHHHhhcCCCCeehHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 047408 306 NTLLDMYSKCGDL---DGAIRVFEKMGERSVVSWTSMIAGYAREG-----VFDGAIRLFRGMVREGIEPDVYAITSILHA 377 (830)
Q Consensus 306 ~~Li~~y~k~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 377 (830)
..|-.+|...|+. ++|.+.|++..+.+...+..+...+...| ++++|+..|++..+.|.. ..+..+-..
T Consensus 39 ~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~ 115 (452)
T 3e4b_A 39 VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAML 115 (452)
T ss_dssp GTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHH
Confidence 3455556666777 89999998887777778888877666665 678999999999886632 255666666
Q ss_pred hhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH----HHHhcCCCCCchhHHHHHHHHHHHHHHHhC
Q 047408 378 CACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE----SVFNQMPVKDIVSWNTMIGALDLFVAMLQN 453 (830)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~----~~f~~m~~~~~~~~n~~i~al~~f~~m~~~ 453 (830)
+...+..+.+...+..+.+..-..+......|..+|...+.++++. .+++.....+
T Consensus 116 y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~-------------------- 175 (452)
T 3e4b_A 116 YLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT-------------------- 175 (452)
T ss_dssp HHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC--------------------
T ss_pred HHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC--------------------
Confidence 6665555444444444433222224567778889998888655444 4444433332
Q ss_pred CCCCccccccchhhhcchh---hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc----CCHHHHHHHhhhCCCCChhh
Q 047408 454 FEPDGVTMACILPACASLA---ALERGREIHGYILRHGISADRNVANAIVDMYVKC----GVLVLARSLFDMIPAKDLIS 526 (830)
Q Consensus 454 ~~pd~~t~~~ll~a~~~~~---~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~m~~~d~~~ 526 (830)
|+ .+..+-..+...| +.++|.+.+....+.| +++...+..|..+|... ++.++|.+.|++....+...
T Consensus 176 --~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a 250 (452)
T 3e4b_A 176 --DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPAS 250 (452)
T ss_dssp --TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHH
T ss_pred --HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 33 5555556666677 8899999999998888 45555556778888665 78999999998877446677
Q ss_pred HHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC-----CHHHHHHHHHHhHhhcCCCCCcchH
Q 047408 527 WTIMIAG-Y--GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG-----LVDEGWRFFNMMRYECNIEPKLEHY 598 (830)
Q Consensus 527 ~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~y 598 (830)
+..+... | ...|+.++|++.|++..+.| +......+...+. .| ++++|.++|+... .-+...+
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~ 321 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAAD 321 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHH
Confidence 8877776 4 56889999999999998876 4555666666565 55 8999999998764 2345667
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 599 ACMVDLLSR----TGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 599 ~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
..|..+|.. ..+.++|.+.+++.--.-+......|...|.. ..|.++|...++++.+..+..+ ...+..+
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l 399 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQL 399 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHH
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHH
Confidence 777777766 34889999999887323344445555555542 4589999999999888765433 3344444
Q ss_pred H--hhhcCHHHHHHHHHH
Q 047408 671 Y--AEAEKWEEVKKLREK 686 (830)
Q Consensus 671 y--~~~g~~~~A~~~~~~ 686 (830)
. ...++.++|.++.+.
T Consensus 400 ~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 3 233455566555444
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.8e-11 Score=124.58 Aligned_cols=232 Identities=11% Similarity=0.019 Sum_probs=137.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCC--c----hhhHHH
Q 047408 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQS--S----LYVSNA 408 (830)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~~ 408 (830)
.|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...+..+++..... + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 56667777778888888888888877765 666667777777777777777777777766543111 1 466777
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 409 LMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 409 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
+...|.+.|++++|...|++....+ |+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~----------------------~~------------------------------- 111 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH----------------------RT------------------------------- 111 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----------------------CC-------------------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC----------------------ch-------------------------------
Confidence 7777778888887777776543211 11
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISV 565 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~l 565 (830)
.+.+.+.|++++|...|+.+.. .+...|..+...|...|++++|++.|++..+. .|+
T Consensus 112 -----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~------- 171 (258)
T 3uq3_A 112 -----------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE------- 171 (258)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------
T ss_pred -----------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--Ccc-------
Confidence 0122333333333333333221 12234444445555555555555555555442 122
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
+...|..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+.
T Consensus 172 ----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 172 ----------------------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred ----------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence 2344555555555666666666555554 2233 356777777777888888
Q ss_pred HHHHHHHHHHhccC------CCCcchHHHHHH
Q 047408 644 KLAEKVAEHVFELE------PDNTGYYVLLAN 669 (830)
Q Consensus 644 ~~a~~~~~~~~~l~------p~~~~~~~~l~~ 669 (830)
++|...+++++++. |++...+..|..
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 88888888888777 766655555543
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=2.5e-11 Score=125.06 Aligned_cols=219 Identities=10% Similarity=-0.040 Sum_probs=181.5
Q ss_pred hhhcchhhHHHHHHHHHHHHHhCCC---CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC
Q 047408 466 PACASLAALERGREIHGYILRHGIS---ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~ 539 (830)
......+++++|...+..+++.... .+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 3455679999999999999986422 246788899999999999999999999864 4568899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
+++|++.|++..+. .|+ ...+..+...+...|++++|.++|+.+.. +.|+..........+.+.|++++|.+.+
T Consensus 93 ~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 93 FDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999984 554 55788888999999999999999999874 4566655566666777889999999999
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 619 EMM-P-VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 619 ~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
++. . .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.+++..+.
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 765 2 233444454 677788888999999999999988774 3678999999999999999999999988763
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=1.3e-11 Score=133.26 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=185.8
Q ss_pred cccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC-HHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 461 MACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGV-LVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 461 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
+..+...+...|+.++|.+.+..+++.. +.+..+++.+...|.+.|+ +++|...|++.. ..+...|+.+...|..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4445556677889999999999999876 5578899999999999997 999999999875 4577899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh-cCCHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR-TGNLSE 613 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r-~g~~~e 613 (830)
.|++++|+..|+++++ +.|+.. .|..+..++.+.|++++|+..|+.+.. +.|+ ...|..+..+|.+ .|..++
T Consensus 179 ~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 179 LRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred ccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998 567655 788888999999999999999999884 4564 6788899999999 677677
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc---------
Q 047408 614 A-----YRFIEMM-PVAP-DATIWGSLLCGCRIHH--EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE--------- 675 (830)
Q Consensus 614 A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g--------- 675 (830)
| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++..+..|+++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667665 4566 4689999999988888 689999999998 999999999999999999985
Q ss_pred CHHHHHHHHHHH
Q 047408 676 KWEEVKKLREKI 687 (830)
Q Consensus 676 ~~~~A~~~~~~m 687 (830)
..++|.++++.+
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358999998887
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=1.2e-11 Score=124.74 Aligned_cols=206 Identities=12% Similarity=0.034 Sum_probs=90.1
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34444444555555555555555555432 2334455555555555555555555555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
.|++++|++.|+++.+.. +.+...+..+...+...|++++|.++++.+.... ..+...+..+...|.+.|++++|.+
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555421 1122334444444555555555555555544221 1123444445555555555555555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 617 FIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 617 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.++++ ...| +..+|..+...+...|+.++|...++++++++|+++..+..++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 55443 1122 24445555555555555555555555555555555444444433
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.33 E-value=5.5e-11 Score=120.84 Aligned_cols=204 Identities=10% Similarity=-0.003 Sum_probs=173.4
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYG 535 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~ 535 (830)
..+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 345556667788899999999999998875 4568889999999999999999999999764 447788999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e 613 (830)
..|++++|++.|+++.+.+..|+.. .+..+...+...|++++|.++|+.+... .| +...+..++.+|.+.|++++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998854567554 6777888999999999999999998753 34 46788899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 614 AYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 614 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
|.+.++++ ...| +...|..+...+...|+.++|...+++++++.|+++.....
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999987 4444 56788888889999999999999999999999998765443
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=6.4e-12 Score=140.87 Aligned_cols=207 Identities=9% Similarity=-0.038 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCH-HHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVL-VLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
..++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566666666544432 45788889999999999999 99999999764 446789999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHcc---------CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------C
Q 047408 548 NDMRQAGIEPDEVSFISVLYACSHS---------GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRT--------G 609 (830)
Q Consensus 548 ~~m~~~g~~Pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~--------g 609 (830)
++..+ +.|+...+..+..++... |++++|.+.|+.... +.|+ ...|..+..+|.+. |
T Consensus 161 ~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 99998 578877888888999999 999999999999874 3464 67888999999998 9
Q ss_pred CHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 610 NLSEAYRFIEMM-PVAP----DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
++++|++.+++. .+.| +...|..+...+...|++++|...++++++++|+++..+..++.++...|++++|.+..
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 4456 67899999999999999999999999999999999999999999999999999998754
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=4.1e-11 Score=119.02 Aligned_cols=206 Identities=8% Similarity=-0.055 Sum_probs=173.8
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYG 535 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~ 535 (830)
..+..+...+...|++++|.+.+..+++.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566777888999999999999998865 4568889999999999999999999999764 446788999999999
Q ss_pred hc-CChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHH
Q 047408 536 MH-GFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLS 612 (830)
Q Consensus 536 ~~-g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~ 612 (830)
.. |++++|++.|+++.+.+..|+. ..+..+..++...|++++|..+|+.+... .| +...+..++.+|.+.|+++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHH
Confidence 99 9999999999999984445554 46778888999999999999999998743 34 3678889999999999999
Q ss_pred HHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 613 EAYRFIEMM-PVA--PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 613 eA~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
+|.+.++++ ... .+...|..+...+...|+.+.+...++.+.+..|+++.....+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 999999987 333 35677777777789999999999999999999999987765553
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=1.2e-11 Score=124.66 Aligned_cols=195 Identities=11% Similarity=0.025 Sum_probs=152.9
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll 566 (830)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 355677788889999999999999999874 346788999999999999999999999999985 44 455788888
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 644 (830)
..+...|++++|.++|+.+.+.. ..+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987542 224677889999999999999999999987 3334 6788999999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|+..++++++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998875
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=8e-12 Score=135.00 Aligned_cols=245 Identities=9% Similarity=0.008 Sum_probs=200.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhh-HHHHHHHH
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAA-LERGREIH 481 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~-~~~a~~i~ 481 (830)
..+++.+...|.+.|++++|...|++....+. -+...+..+..++...|+ +++|...+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P---------------------~~~~a~~~~g~~l~~~g~d~~eAl~~~ 155 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA---------------------ANYTVWHFRRVLLKSLQKDLHEEMNYI 155 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 45677888888999999999999887654431 234455666677778886 99999999
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 482 GYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
..+++.. +.+..+|+.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++++ +.|+
T Consensus 156 ~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~ 232 (382)
T 2h6f_A 156 TAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVR 232 (382)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCC
Confidence 9999876 4578899999999999999999999999875 55788999999999999999999999999999 5676
Q ss_pred hh-HHHHHHHHHHc-cCCHHHH-----HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-H
Q 047408 559 EV-SFISVLYACSH-SGLVDEG-----WRFFNMMRYECNIEPK-LEHYACMVDLLSRTG--NLSEAYRFIEMMPVAPD-A 627 (830)
Q Consensus 559 ~~-t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g--~~~eA~~~~~~m~~~p~-~ 627 (830)
.. .+..+..++.+ .|..++| ++.|+... .+.|+ ...|..+..+|.+.| ++++|+++++++...|+ .
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~ 309 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSP 309 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCH
Confidence 54 68888888888 6665777 57888776 35675 678888999999988 69999999998866664 6
Q ss_pred HHHHHHHHHHHhcC---------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHhhh
Q 047408 628 TIWGSLLCGCRIHH---------EVKLAEKVAEHV-FELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 628 ~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 674 (830)
.++..|...+...| .+++|+.+++++ .+++|.....|..++..+...
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 78888888887764 359999999999 999999998888887766543
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=5.2e-11 Score=114.71 Aligned_cols=162 Identities=13% Similarity=0.068 Sum_probs=124.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYAC 600 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 600 (830)
+...|..+...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|...+...... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 445677777777777777777777777776 456554 5666777777888888888877776532 33 3456666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
+...+...+++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..|..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777788888888888887775 3344 46778888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
+|.+.+++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998887764
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=5.3e-11 Score=122.41 Aligned_cols=222 Identities=8% Similarity=-0.048 Sum_probs=177.1
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHH
Q 047408 462 ACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KDL----ISWTIMIAGYG 535 (830)
Q Consensus 462 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~~ 535 (830)
......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++... ++. .+|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344556778899999999999998865 34566888899999999999999999987643 222 24888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~e 613 (830)
..|++++|++.|++..+. .|+. ..+..+...+...|++++|.++|+... .+.|+ ...+..+...+...+++++
T Consensus 86 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999984 4544 478888899999999999999998876 44564 5667777734445569999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHhhhcCHHHH
Q 047408 614 AYRFIEMM-PVAPD-ATIWGSLLCGCRIHHE---VKLAEKVAEHVFELE---PDN-----TGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 614 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~---p~~-----~~~~~~l~~~y~~~g~~~~A 680 (830)
|.+.++++ ...|+ ...|..+...+...|+ .++|...+++++++. |+. ...|..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 44454 6778788888888888 888999999988765 442 25788899999999999999
Q ss_pred HHHHHHHHh
Q 047408 681 KKLREKISR 689 (830)
Q Consensus 681 ~~~~~~m~~ 689 (830)
.+.+++..+
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988775
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=2.1e-10 Score=118.33 Aligned_cols=221 Identities=10% Similarity=-0.050 Sum_probs=188.6
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCC-CCChhhHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIP-AKDLISWTIMIAG 533 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~-~~d~~~~~~li~~ 533 (830)
.++..+-..+...|++++|.+.+..+.+ +.+...+..|..+|.. .|++++|...|++.. ..+...|..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555667788999999999999998 3456788889999999 999999999999765 3477889999999
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 534 YGM----HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH----SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 534 ~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
|.. .|++++|++.|++..+.+ +...+..+...+.. .|++++|.++|+...+. + +...+..+..+|
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLY 156 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHH
Confidence 999 999999999999999865 66778888888888 99999999999998753 3 456778888899
Q ss_pred Hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----
Q 047408 606 SR----TGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE---- 673 (830)
Q Consensus 606 ~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 673 (830)
.+ .|++++|.+.+++.--..+...+..+...+.. .+++++|...++++++.+| +..+..|+.+|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 88 99999999999987323457788888888988 9999999999999999877 6788999999999
Q ss_pred hcCHHHHHHHHHHHHhCC
Q 047408 674 AEKWEEVKKLREKISRRG 691 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~~g 691 (830)
.|++++|.+.+++..+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999999887654
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.28 E-value=3.6e-11 Score=119.48 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=75.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCC
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMH-----------GFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~Pd 558 (830)
...+..+...|.+.|++++|...|++.. ..+...|..+...|... |++++|+..|++..+ +.|+
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~ 116 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPR 116 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcc
Confidence 3444444445555555555555554432 22334455555555555 666666666666655 3444
Q ss_pred hh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047408 559 EV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLC 635 (830)
Q Consensus 559 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 635 (830)
.. .+..+..++...|++++|+..|+...+. . .+...+..+..+|...|++++|.+.+++. ...| +..+|..+..
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 193 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 32 4445555556666666666666655533 2 44555556666666666666666666554 2333 3455556666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~ 653 (830)
.+...|++++|...++++
T Consensus 194 ~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTC--------------
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666666666666655543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.26 E-value=7.3e-11 Score=129.05 Aligned_cols=292 Identities=10% Similarity=-0.013 Sum_probs=176.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----chHHHHHHHhhccCcchhhhhHHHHHHhh----cC-CCchh
Q 047408 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-----YAITSILHACACDGLLEIGKDVHDYIKEN----DM-QSSLY 404 (830)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~ 404 (830)
.|......+...|++++|+..|++..+. .|+. ..+..+...+...|+++.|...+..+++. +- +....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3444455555666666666666666554 2221 23444444555555655555555554332 11 11245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHH
Q 047408 405 VSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYI 484 (830)
Q Consensus 405 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 484 (830)
++..+...|...|++++|...|++... ++... ++.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~~~~-----~~~-------------------------- 123 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLD--------------ISREL-----NDK-------------------------- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHH-----TCH--------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------------HHHhc-----ccc--------------------------
Confidence 677788888888999988888765421 11110 000
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCC--------------------HHHHHHHhhhCC-------CC--ChhhHHHHHHHHH
Q 047408 485 LRHGISADRNVANAIVDMYVKCGV--------------------LVLARSLFDMIP-------AK--DLISWTIMIAGYG 535 (830)
Q Consensus 485 ~~~g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~-------~~--d~~~~~~li~~~~ 535 (830)
.....++..+...|...|+ +++|...|++.. .+ ...+|+.+...|.
T Consensus 124 -----~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 198 (406)
T 3sf4_A 124 -----VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY 198 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 0012233444444555555 555554444321 11 1235667777777
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGI-EPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLS 606 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~ 606 (830)
..|++++|++.|++..+... .++ ..++..+...+...|++++|..+++.......-.++ ...+..+...|.
T Consensus 199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 199 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 77888888888777764210 122 125666777788888888888888776532211111 456778888899
Q ss_pred hcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHh
Q 047408 607 RTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP------DNTGYYVLLANVYA 672 (830)
Q Consensus 607 r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~ 672 (830)
+.|++++|.+.+++. +..++ ..+|..+...+...|++++|...+++++++.+ .....+..++.+|.
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 999999998888775 11222 45788888889999999999999999987643 33456788888888
Q ss_pred hhcCHH
Q 047408 673 EAEKWE 678 (830)
Q Consensus 673 ~~g~~~ 678 (830)
..|+..
T Consensus 359 ~~g~~~ 364 (406)
T 3sf4_A 359 VLGLSY 364 (406)
T ss_dssp HHHTTS
T ss_pred HhhHhH
Confidence 888764
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=3.1e-11 Score=140.90 Aligned_cols=161 Identities=15% Similarity=0.174 Sum_probs=134.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYAC 600 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 600 (830)
+..+|+.|...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|++.|+... .+.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 345777788888888888888888888887 567654 67778888888888888888888876 34565 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
+..+|.+.|++++|++.+++. .+.|+ ..+|..|...+...|++++|+..++++++++|+++..|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999988876 55664 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047408 679 EVKKLREKIS 688 (830)
Q Consensus 679 ~A~~~~~~m~ 688 (830)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.25 E-value=1.4e-10 Score=129.19 Aligned_cols=347 Identities=10% Similarity=-0.048 Sum_probs=220.8
Q ss_pred HHHHHhhcCCChHHHHHHHhhcCC-CCeehHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCcchHHHHHHHhhcc-
Q 047408 307 TLLDMYSKCGDLDGAIRVFEKMGE-RSVVSWTSMIAGYAREGVF---DGAIRLFRGMVREGIEPDVYAITSILHACACD- 381 (830)
Q Consensus 307 ~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~- 381 (830)
.+...+.+.|++++|.++|++..+ .+...+..+...|...|++ ++|+..|++..+. +...+..+-..+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 356677888999999999988755 3566777777778888888 8999999988754 444444444433333
Q ss_pred ----CcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC
Q 047408 382 ----GLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD 457 (830)
Q Consensus 382 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd 457 (830)
++.++|...+....+.|. ...+..|..+|...+..+++.+. ++.+......+ +
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a------------------~~~~~~a~~~g--~ 140 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNA------------------QQQISQWQAAG--Y 140 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCH------------------HHHHHHHHHHT--C
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHH------------------HHHHHHHHHCC--C
Confidence 377889999999988773 33777888888877765543222 22222222222 2
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---CHHHHHHHhhhCC---CCChhhHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCG---VLVLARSLFDMIP---AKDLISWTIMI 531 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~---~~d~~~~~~li 531 (830)
......+...+...+.++.+..-...+.+.-...++..+..|..+|.+.| +.++|.+.|++.. .++...+..+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg 220 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA 220 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23344444445444533333322222222223344558888999999999 8999999998764 33444456777
Q ss_pred HHHHhc----CChHHHHHHHHHHHHcCCCCChhHHHHHHHH-H--HccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 532 AGYGMH----GFGCDAIATFNDMRQAGIEPDEVSFISVLYA-C--SHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 532 ~~~~~~----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
..|... ++.++|++.|++.. .| +...+..+... + ...|+.++|.++|+..... | +...+..|..+
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKL 292 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 777554 68999999999987 32 33344455444 3 5689999999999987643 3 56677778888
Q ss_pred HHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh--
Q 047408 605 LSRTG-----NLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE-- 673 (830)
Q Consensus 605 l~r~g-----~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~-- 673 (830)
|. .| ++++|.+.|++.- .-++..+..|...|.. ..|.++|...++++.+ +.++.....|+.+|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCT
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCC
Confidence 87 55 9999999999987 5577788777766655 3499999999999876 4567788899999985
Q ss_pred --hcCHHHHHHHHHHHHhCCC
Q 047408 674 --AEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 674 --~g~~~~A~~~~~~m~~~g~ 692 (830)
..+.++|...++...+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 4589999999998888775
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=1.2e-11 Score=135.91 Aligned_cols=227 Identities=11% Similarity=-0.048 Sum_probs=162.7
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHh----CC-CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---------ChhhHH
Q 047408 463 CILPACASLAALERGREIHGYILRH----GI-SADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---------DLISWT 528 (830)
Q Consensus 463 ~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~~~ 528 (830)
.+...+...|++++|...+..+++. +- +....++..+...|...|++++|...|++...- ...+|+
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 170 (411)
T 4a1s_A 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY 170 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3334444455555555555544332 11 123456777888888999999988888765311 234778
Q ss_pred HHHHHHHhcCC-----------------hHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 529 IMIAGYGMHGF-----------------GCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 529 ~li~~~~~~g~-----------------~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
.+...|...|+ +++|++.|++..+. +-.|.. .++..+...+...|++++|.++|+...
T Consensus 171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 88888889999 89999988887542 212222 257777788899999999999998876
Q ss_pred hhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 587 YECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 587 ~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
....-.++ ...+..+..+|...|++++|.+.+++. +-..+ ..+|..+...+...|++++|...+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43211112 237788899999999999999998876 11112 4678888889999999999999999998
Q ss_pred ccCCCC------cchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 655 ELEPDN------TGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 655 ~l~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.++. ...+..++.+|...|++++|.+.+++..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 875543 34788999999999999999999887764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.23 E-value=3.8e-11 Score=131.30 Aligned_cols=227 Identities=12% Similarity=0.002 Sum_probs=167.9
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHh----CCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHH
Q 047408 463 CILPACASLAALERGREIHGYILRH----GISA-DRNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWT 528 (830)
Q Consensus 463 ~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~ 528 (830)
.+...+...|+++.|...+..+++. +..+ ...++..+...|...|++++|...|++... ++ ..+|.
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 3334444455555555555444322 2111 255677888999999999999999886541 22 34788
Q ss_pred HHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHH
Q 047408 529 IMIAGYGMHGF--------------------GCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 529 ~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
.+...|...|+ +++|++.|++.... +-.|.. .++..+...+...|++++|.++|+
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 89999999999 99999999987652 212222 257777888999999999999999
Q ss_pred HhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 584 MMRYECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 584 ~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
.......-.++ ...+..+..+|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 87643222222 337888999999999999999999876 11122 4678888889999999999999999
Q ss_pred HHhccCCCC------cchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 652 HVFELEPDN------TGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 652 ~~~~l~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++++.|.. +..+..++.+|...|++++|.+.+++..+
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998875543 45788999999999999999999887654
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.22 E-value=3.4e-10 Score=116.65 Aligned_cols=227 Identities=9% Similarity=-0.106 Sum_probs=177.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcc----hhhHHHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACAS----LAALERG 477 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~----~~~~~~a 477 (830)
+..++..+...|.+.|++++|...|++..+++ +...+..+...+.. .++.++|
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~~~g~~~~~~~~~A 61 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------------ENSGCFNLGVLYYQGQGVEKNLKKA 61 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------------CHHHHHHHHHHHHcCCCcCCCHHHH
Confidence 34556667777777777777777776654332 12233334444555 7778888
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCC-CCChhhHHHHHHHHHh----cCChHHHHHHHH
Q 047408 478 REIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIP-AKDLISWTIMIAGYGM----HGFGCDAIATFN 548 (830)
Q Consensus 478 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~ 548 (830)
...+..+.+.+ +...+..|..+|.+ .|++++|...|++.. ..+..++..+...|.. .|++++|++.|+
T Consensus 62 ~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 62 ASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 88888887765 67788889999999 999999999998765 3477889999999999 999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHh
Q 047408 549 DMRQAGIEPDEVSFISVLYACSH----SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR----TGNLSEAYRFIEM 620 (830)
Q Consensus 549 ~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~ 620 (830)
+..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++
T Consensus 139 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 139 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 999865 45566777777777 89999999999988743 245778889999999 9999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCc
Q 047408 621 MPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 621 m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.--..+...+..|...+.. .++.++|...+++++++.|+++
T Consensus 212 a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 212 ACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 7222336778888888888 8999999999999999998754
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.22 E-value=7.6e-11 Score=124.80 Aligned_cols=263 Identities=12% Similarity=0.008 Sum_probs=198.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-----ccccccchhhhcchhhHHHHHH
Q 047408 405 VSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-----GVTMACILPACASLAALERGRE 479 (830)
Q Consensus 405 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-----~~t~~~ll~a~~~~~~~~~a~~ 479 (830)
.+......+.+.|++++|...|++..+.+ |+ ...+..+...+...|+++.|.+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 64 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG----------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALE 64 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------------cccHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445677888899999998888764332 22 2345566677778889999988
Q ss_pred HHHHHHHh----CCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC----hhhHHHHHHHHHhcCC------
Q 047408 480 IHGYILRH----GISA-DRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKD----LISWTIMIAGYGMHGF------ 539 (830)
Q Consensus 480 i~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d----~~~~~~li~~~~~~g~------ 539 (830)
.+..+++. +..+ ...++..+...|...|++++|...|++.. .++ ..+|..+...|...|+
T Consensus 65 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 88876543 2222 35677888999999999999999998753 122 3478888999999999
Q ss_pred --------------hHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cc
Q 047408 540 --------------GCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LE 596 (830)
Q Consensus 540 --------------~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 596 (830)
+++|++.|++.... +-.|.. .++..+...+...|++++|.++++.......-.++ ..
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99999999887642 212222 25677778889999999999999987643221122 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cc
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TG 662 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~ 662 (830)
.+..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.|.. ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888999999999999999999876 11222 4577888889999999999999999998876543 34
Q ss_pred hHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 663 YYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 663 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+..++.+|...|++++|.+.+++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 788999999999999999999988765
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=2.6e-10 Score=114.06 Aligned_cols=185 Identities=11% Similarity=-0.050 Sum_probs=82.6
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---A-KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLY 567 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~ 567 (830)
+..+..+...|.+.|++++|...|++.. . ++...|..+...|...|++++|++.|++..+ ..|+.. .+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444444555555555555555554332 1 3444444444555555555555555555544 334332 3444444
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCC-c-------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPK-L-------EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD---ATIWGSLLC 635 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~ 635 (830)
.+...|++++|.+.|+..... .|+ . ..|..+...+.+.|++++|++.+++. ...|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 445555555555555544421 222 1 22344444444444444444444443 33333 123333333
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+. ..+...++++..+.+.++..|. .......|.+++|...+++..+
T Consensus 162 ~~~-----~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFY-----NNGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 332 2233333444444433322221 1222333444888888777664
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.22 E-value=1.4e-10 Score=111.54 Aligned_cols=167 Identities=12% Similarity=0.025 Sum_probs=143.6
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll 566 (830)
.++.+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.+++.... .|+.. .+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 356789999999999999999999999764 457789999999999999999999999999884 45544 566667
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
..+...++++++.+.+..... +.| +...+..+..+|.+.|++++|++.+++. .+.| +..+|..+...+...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 788899999999999998874 345 4677889999999999999999999987 4455 578899999999999999
Q ss_pred HHHHHHHHHHhccCCCCcc
Q 047408 644 KLAEKVAEHVFELEPDNTG 662 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~~ 662 (830)
++|+..++++++++|+++.
T Consensus 158 ~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhCCccCHH
Confidence 9999999999999998643
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=1.6e-09 Score=113.90 Aligned_cols=210 Identities=10% Similarity=0.011 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHH-------hcCCH-------HHHHHHhhhCC----CCChhhHHHHHHHHHh
Q 047408 475 ERGREIHGYILRHGISADRNVANAIVDMYV-------KCGVL-------VLARSLFDMIP----AKDLISWTIMIAGYGM 536 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~m~----~~d~~~~~~li~~~~~ 536 (830)
+.|..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++.. ..+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888887754 567778888877775 35775 89999998653 2356689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHH-hcCCHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLS-RTGNLS 612 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~-r~g~~~ 612 (830)
.|++++|.++|++.++ +.|+.. .+..+...+.+.|++++|+.+|+...+ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999987 567654 688888888889999999999998873 3443 444444433322 369999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 613 EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFEL---EPD-NTGYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 613 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
+|.++|++. ...| +...|..++..+...|+.+.|+.+++++++. .|+ ....+..+++.+.+.|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999886 2233 5788999998899999999999999999985 554 566788889999999999999998888
Q ss_pred HHhC
Q 047408 687 ISRR 690 (830)
Q Consensus 687 m~~~ 690 (830)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=2.4e-10 Score=127.98 Aligned_cols=176 Identities=9% Similarity=0.005 Sum_probs=154.6
Q ss_pred HHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHH
Q 047408 509 LVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG-CDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 509 ~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
+++|...++... ..+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666665443 34678899999999999999 999999999998 4666 4578888899999999999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 047408 584 MMRYECNIEPKLEHYACMVDLLSRT---------GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH--------HEVK 644 (830)
Q Consensus 584 ~m~~~~~~~p~~~~y~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~~ 644 (830)
... .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 987 5678888899999999999 9999999999987 4455 578999999999888 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 645 LAEKVAEHVFELEP---DNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 645 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|+..++++++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999988765
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=7.4e-10 Score=117.08 Aligned_cols=270 Identities=11% Similarity=-0.001 Sum_probs=157.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----chHHHHHHHhhccCcchhhhhHHHHHHhh----cC-CCchhhHH
Q 047408 338 SMIAGYAREGVFDGAIRLFRGMVREGIEPDV-----YAITSILHACACDGLLEIGKDVHDYIKEN----DM-QSSLYVSN 407 (830)
Q Consensus 338 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~ 407 (830)
.....+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|.+.+..+++. +. .....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3444555666666666666666554 2332 33444445555566666666655554432 11 12245677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
.+...|...|++++|...|++.... +.+ .++..
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~--------------~~~-----~~~~~---------------------------- 120 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDI--------------SRE-----LNDKV---------------------------- 120 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------HHH-----TTCHH----------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH--------------HHH-----hcCch----------------------------
Confidence 7888888889999888887664211 100 00000
Q ss_pred CCCCchhHHhHHHHHHHhcCC--------------------HHHHHHHhhhCC-------CC--ChhhHHHHHHHHHhcC
Q 047408 488 GISADRNVANAIVDMYVKCGV--------------------LVLARSLFDMIP-------AK--DLISWTIMIAGYGMHG 538 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~-------~~--d~~~~~~li~~~~~~g 538 (830)
....++..+...|...|+ +++|.+.|++.. .+ ....|..+...|...|
T Consensus 121 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 121 ---GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 001233334444444444 444444444321 00 1235666667777777
Q ss_pred ChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcC
Q 047408 539 FGCDAIATFNDMRQAGI-EPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTG 609 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g 609 (830)
++++|++.|++..+... .++ ..++..+...+...|++++|..+++.......-.++ ...+..+...|.+.|
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 77777777777654210 011 115666667777888888888888776532211111 456777888888999
Q ss_pred CHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 610 NLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 610 ~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
++++|.+.+++. +..++ ..+|..+...+...|++++|...+++++++.++
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999998888775 11112 357778888899999999999999999988765
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.15 E-value=6.5e-10 Score=121.98 Aligned_cols=270 Identities=11% Similarity=-0.000 Sum_probs=164.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----chHHHHHHHhhccCcchhhhhHHHHHHhh----c-CCCchhhHH
Q 047408 338 SMIAGYAREGVFDGAIRLFRGMVREGIEPDV-----YAITSILHACACDGLLEIGKDVHDYIKEN----D-MQSSLYVSN 407 (830)
Q Consensus 338 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~ 407 (830)
.+...+...|++++|+..|++..+. .|+. ..+..+...+...|+++.|...+..+++. + ......++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3445556666666666666666554 2332 23444445555566666666665555443 1 122345677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
.+...|...|++++|...|++.. +++.+. + +
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al--------------~~~~~~---~--~------------------------------ 161 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHL--------------TLARQL---G--D------------------------------ 161 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHH---T--C------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--------------HHHHHh---h--c------------------------------
Confidence 88888899999999988887642 111111 0 0
Q ss_pred CCCCchhHHhHHHHHHHhcCC-----------------HHHHHHHhhhCC-------CC--ChhhHHHHHHHHHhcCChH
Q 047408 488 GISADRNVANAIVDMYVKCGV-----------------LVLARSLFDMIP-------AK--DLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~-----------------~~~A~~~f~~m~-------~~--d~~~~~~li~~~~~~g~~~ 541 (830)
.+....++..+...|...|+ +++|.+.|++.. .+ ....|..+...|...|+++
T Consensus 162 -~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 162 -RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 00112234444455555555 555555544321 11 1236666777777777877
Q ss_pred HHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHH
Q 047408 542 DAIATFNDMRQAGI-EPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP----KLEHYACMVDLLSRTGNLS 612 (830)
Q Consensus 542 ~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~ 612 (830)
+|++.|++..+... .++ ..++..+...+...|++++|.++|+.......-.. ....+..+..+|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777765210 011 11566677778888888888888877653221111 1456778888899999999
Q ss_pred HHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 613 EAYRFIEMM-P---VAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 613 eA~~~~~~m-~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
+|.+.+++. . -.++ ..++..+...+...|++++|...+++++++.+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999888876 1 1112 357788888899999999999999999887664
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.15 E-value=2.3e-08 Score=115.21 Aligned_cols=405 Identities=10% Similarity=0.034 Sum_probs=230.4
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHhCC-CCCchHH
Q 047408 230 RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA---LMFGRAVHAFALKACF-SKEISFN 305 (830)
Q Consensus 230 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---~~~~~~l~~~~~~~g~-~~~~~~~ 305 (830)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.++++++..+.... .|++.+|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 58889999999999999999999999999875 33344556666666667777 8888889888887652 4677777
Q ss_pred HHHHHHhhcCCCh--------HHHHHHHhhcC------CC-CeehHHHHHHHHH---------hcCChhHHHHHHHHHHH
Q 047408 306 NTLLDMYSKCGDL--------DGAIRVFEKMG------ER-SVVSWTSMIAGYA---------REGVFDGAIRLFRGMVR 361 (830)
Q Consensus 306 ~~Li~~y~k~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~ 361 (830)
...+....+.++. +..+++|+... .+ +...|...|.-.. .+++.+.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777665554443 33446776522 22 3356777775433 23345677788888774
Q ss_pred cCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc-------CCC---
Q 047408 362 EGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ-------MPV--- 431 (830)
Q Consensus 362 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-------m~~--- 431 (830)
.....-..+|..... +.+.-+...++.++.... ..++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211111122211111 111001111222111100 011112221111 000
Q ss_pred C-------------C------chhHHHHHH-----------------HHHHHHHHHhCCCCCccccccchhhhcchhhHH
Q 047408 432 K-------------D------IVSWNTMIG-----------------ALDLFVAMLQNFEPDGVTMACILPACASLAALE 475 (830)
Q Consensus 432 ~-------------~------~~~~n~~i~-----------------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 475 (830)
+ + +..|...|. ...+|++......-+...+.....-+...|+.+
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH
Confidence 0 0 011211111 112333333332223333333333344556666
Q ss_pred HHH-HHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------------CC------------hhhHHH
Q 047408 476 RGR-EIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------------KD------------LISWTI 529 (830)
Q Consensus 476 ~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------------~d------------~~~~~~ 529 (830)
.|. +++..++.. ++.+...+-..+..+-+.|+++.|+++|+++.. |+ ...|-.
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 775 788777763 345666677777888888888888888876542 21 225777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHc-cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQA-GIEPDEVSFISVLYACSH-SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR 607 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 607 (830)
.+....+.|..+.|..+|.+.++. +. +....|......-.+ .++.+.|..+|+...+.++- +...+...++.+..
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHh
Confidence 777777778888888888888764 11 112223222211222 34478888888877765322 33445677777777
Q ss_pred cCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 608 TGNLSEAYRFIEMM-PVAP----DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 608 ~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 88888888888875 2223 236788887777888888888888888888888764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=1.2e-09 Score=114.79 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--K-DLI-SWTIMIAGYGMHGFGCDAIATFND 549 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~A~~l~~~ 549 (830)
.++|..++..+++.-.+.+...+..++..+.+.|++++|.++|++... | +.. .|..++..+.+.|+.++|.++|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 489999999999842345677999999999999999999999998652 3 344 899999999999999999999999
Q ss_pred HHHcCCCCCh-hHHHHHHHHHH-ccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 047408 550 MRQAGIEPDE-VSFISVLYACS-HSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM----P 622 (830)
Q Consensus 550 m~~~g~~Pd~-~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~ 622 (830)
..+. .|+. ..|........ ..|++++|..+|+...+. .| +...|..+++.+.+.|+.++|..+|++. +
T Consensus 160 a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 160 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 9984 3443 34444333322 379999999999998754 34 4678899999999999999999999987 2
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 623 VAP--DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 623 ~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+.| ....|..++.....+|+.+.|..+++++++..|+++..
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 455 36799999999999999999999999999999987643
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=1.3e-09 Score=108.79 Aligned_cols=205 Identities=13% Similarity=0.042 Sum_probs=160.0
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHH
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIA 532 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~ 532 (830)
.|...+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|.+.|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34556666777888999999999999999998754677777779999999999999999999764 335678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh--------HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC---cchHHHH
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEV--------SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK---LEHYACM 601 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~l 601 (830)
.|...|++++|++.|++..+ ..|+.. .+..+...+...|++++|.+.|+... .+.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 99999999999999999998 456643 46667778889999999999999987 45675 4677778
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 602 VDLLSRTGNL--SEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 602 v~~l~r~g~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
..+|...|+. ++|..+. ..+...+..+. ....+++++|...++++++++|+++.....|..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 3332221 22344444333 345567999999999999999999988888877654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=3.4e-10 Score=118.65 Aligned_cols=231 Identities=15% Similarity=0.101 Sum_probs=151.7
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHh-------CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C--
Q 047408 459 VTMACILPACASLAALERGREIHGYILRH-------GISADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------K-- 522 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~-- 522 (830)
.++..+...+...|++++|..++..+++. ..+....++..+...|...|++++|...|++... +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566667777888888888888887763 2333466777888888888888888888876531 1
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhc----
Q 047408 523 --DLISWTIMIAGYGMHGFGCDAIATFNDMRQA------GIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYEC---- 589 (830)
Q Consensus 523 --d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 589 (830)
...+|..+...|...|++++|++.|+++.+. +-.|+.. .+..+...+...|++++|.++|+.+....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2457777888888888888888888888763 2233333 46667777888888888888888775431
Q ss_pred -CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCCH-HHHH------HHHHHHHhcCCHHHHHHHH
Q 047408 590 -NIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMP----------VAPDA-TIWG------SLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 590 -~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~~-~~~~------~ll~~~~~~g~~~~a~~~~ 650 (830)
+..| ....+..+..+|.+.|++++|.+.++++- ..|.. ..|. .+...+...+.++++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1122 24567778888888888888888887651 11211 1222 2222333444555556667
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++.+..|..+..+..++.+|...|++++|.+.+++..+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777888888999999999999999999999887654
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=1.2e-09 Score=104.49 Aligned_cols=158 Identities=12% Similarity=-0.011 Sum_probs=96.7
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 571 (830)
.+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+. .|+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~------------- 74 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD------------- 74 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-------------
Confidence 444455555556666666666655442 23444555555555555555555555555542 222
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PV-APDATIWGSLLCGCRIHHEVKLAEKV 649 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 649 (830)
+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...
T Consensus 75 ----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 75 ----------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 2334444555555555555555555554 11 23456677777777777888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 650 AEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 650 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888877887777788888888888888888887776654
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=2.6e-09 Score=116.09 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=124.4
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh---
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIP-----AKD-----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGI-EPDE--- 559 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd~--- 559 (830)
.++..+...|...|++++|...|++.. .++ ..+++.+...|...|++++|++.|++..+... .++.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 345556666666666666666665432 111 24666777777777777777777777664210 0111
Q ss_pred -hHHHHHHHHHHccCCHHHHHHHHHHhHhh---cCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C---C--CCC-H
Q 047408 560 -VSFISVLYACSHSGLVDEGWRFFNMMRYE---CNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P---V--APD-A 627 (830)
Q Consensus 560 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~---~--~p~-~ 627 (830)
.++..+...+...|++++|.++|+....- .+..| ....+..+...|.+.|++++|.+.+++. . . .|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 25666777777888888888888776531 12213 2456777788888888888888877765 1 1 122 2
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 628 TIWGSLLCGCRIHHE---VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+..+...+...|+ ++.|...+++. ...|.....+..|+.+|...|++++|.+.+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234556666777777 66777776665 33444456777888889999999988888877653
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=5.3e-09 Score=99.86 Aligned_cols=169 Identities=12% Similarity=-0.013 Sum_probs=124.0
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
.+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44556667788899999999998887653 4567889999999999999999999999764 4467788889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
.|++++|++.|+++.+.. +.+...+..+...+...|++++|.++++.+...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------------- 139 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---------------------------- 139 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----------------------------
Confidence 999999999999988742 223334555555555556666666555554421
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 617 FIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 617 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
.+.+..+|..+...+...|+.++|...+++++++.|+++...
T Consensus 140 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 140 ------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 112356677777777778888888888888888777765443
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=1.9e-07 Score=107.70 Aligned_cols=127 Identities=11% Similarity=0.055 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhhcCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCC---hHHHHHH
Q 047408 79 LEKAMEVLYSSEKSKI-DTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGD---LKEGRRV 154 (830)
Q Consensus 79 ~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~---~~~A~~~ 154 (830)
..+.+..|++.+...| +..+|..+++.+.+.+.++.++.++++++..- |.....|...+..-.+.|+ ++.++.+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4455556666555555 44599999999988899999999999998863 4437788888998888888 9999999
Q ss_pred HhcCC--C---CCcchHHHHHHHHHhCCCh----hH----HHHHHHHHHH-cCC-CCCc-ccHHHHHHH
Q 047408 155 FNKID--N---GKVFIWNLLMHEYSKTGNF----KE----SLYLFKKMQS-LGI-AADS-YTFSCVLKC 207 (830)
Q Consensus 155 f~~m~--~---~~~~~~~~li~~~~~~g~~----~~----A~~l~~~m~~-~g~-~p~~-~t~~~ll~~ 207 (830)
|++.. . +++..|..-+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 99754 2 6777888877765555543 23 3467766443 465 5543 345444443
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=4e-10 Score=118.05 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=153.5
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHH
Q 047408 333 VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDM 412 (830)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 412 (830)
..+|..+...|...|++++|+.+|+++.+. ..............++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALED----------------------------LEKTSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------HHHHcCCCCHHHHHHHHHHHHH
Confidence 457888888888889999999888887642 0000000112235567888999
Q ss_pred HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc
Q 047408 413 YAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISAD 492 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 492 (830)
|...|++++|...|++.. +++.+... ...+..
T Consensus 79 ~~~~g~~~~A~~~~~~al--------------~~~~~~~~----------------------------------~~~~~~ 110 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDAL--------------AIREKTLG----------------------------------KDHPAV 110 (311)
T ss_dssp HHHTTCHHHHHHHHHHHH--------------HHHHHHHC----------------------------------TTCHHH
T ss_pred HHHCCCHHHHHHHHHHHH--------------HHHHHHhC----------------------------------CCChHH
Confidence 999999999999887542 11111110 001112
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA-------K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA------GI 555 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 555 (830)
..++..+...|...|++++|...|++... + ....|..+...|...|++++|++.|+++.+. +-
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556666777777777777777765431 1 2346777777888888888888888887763 22
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhc------CCCCCc-c------hHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYEC------NIEPKL-E------HYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~-~------~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
.|+.. ++..+...+...|++++|.++|+.+.... ...|.. . .+..+...+...+.+.+|...++..
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence 34333 56677778888888888888888776421 122221 1 2222333445556666666666666
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 622 P-VAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 622 ~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
. ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3 334 3578899999999999999999999999998775
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.98 E-value=2.7e-07 Score=99.56 Aligned_cols=163 Identities=13% Similarity=0.046 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C-C-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH---
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIE--P-D-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA--- 599 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--P-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~--- 599 (830)
++.+...|...|++++|...+++....... | . ..++..+...+...|++++|..+++.......-......+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 334444555555566666555555442111 1 1 12344455556666666666666665543211111111111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHH
Q 047408 600 --CMVDLLSRTGNLSEAYRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TGYYV 665 (830)
Q Consensus 600 --~lv~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~ 665 (830)
..+..+.+.|++++|.+.+++. ...|. ...+..+...+...|+.++|...++++++..+.. ...+.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 2234466777777777777776 22221 2245566667777788888888887776553321 13567
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 666 LLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.++.+|...|+.++|.+.++....
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888888888888887776543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.96 E-value=1.7e-09 Score=126.16 Aligned_cols=164 Identities=12% Similarity=0.154 Sum_probs=144.7
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll 566 (830)
.+...++.|...|.+.|++++|.+.|++.. ..+...|+.+...|.+.|++++|++.|++.++ +.|+.. .+..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 357788999999999999999999999764 44678999999999999999999999999998 578765 788999
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 643 (830)
.++...|++++|++.|++.. .+.|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999987 45675 688999999999999999999999986 56674 68899999999999999
Q ss_pred HHHHHHHHHHhccCCC
Q 047408 644 KLAEKVAEHVFELEPD 659 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~ 659 (830)
++|+..+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999876554
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.95 E-value=6.6e-09 Score=112.89 Aligned_cols=166 Identities=11% Similarity=0.027 Sum_probs=128.1
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP-----AKD----LISWTIMIAGYGMHGFGCDAIATFNDMRQA----GIEPDE 559 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd~ 559 (830)
..+++.+...|...|++++|...|++.. .++ ..+|+.+...|...|++++|++.|++..+. +..|+.
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 3467778888889999999888887653 122 247888899999999999999999998762 332444
Q ss_pred -hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHH
Q 047408 560 -VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK---LEHYACMVDLLSRTGN---LSEAYRFIEMMPVAPDA-TIWG 631 (830)
Q Consensus 560 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~-~~~~ 631 (830)
.++..+...+...|++++|.++++....-..-.++ ...+..+..+|...|+ +++|++++++.+..|+. .++.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 343 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 36888888999999999999999887542211112 2346778889999999 99999999999665553 5777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.|...+...|++++|...+++++++..
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 888889999999999999999987543
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.93 E-value=3.6e-09 Score=108.82 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=140.5
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA------ 553 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 553 (830)
....++..+...|...|++++|...|++... + ...+|+.+...|...|++++|++.|++....
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 3567888899999999999999999886541 1 3457888999999999999999999998864
Q ss_pred CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 047408 554 GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYEC-----NIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM----- 621 (830)
Q Consensus 554 g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----- 621 (830)
.-.|+. .++..+...+...|++++|.++|+.+.... +-.| ....+..+..+|.+.|++++|.+.+++.
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112433 367778888999999999999998876431 1123 2567888899999999999999998876
Q ss_pred -----CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 622 -----PVAPD-ATIWGSLLCGCRIHHE------VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 622 -----~~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...+. ...|..+.......+. +..+...++.+....|..+..+..|+.+|...|++++|.+.+++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12232 2344444444433332 33444444444445566677899999999999999999999987754
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=4.7e-08 Score=99.77 Aligned_cols=201 Identities=14% Similarity=0.056 Sum_probs=117.0
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA--K-D---LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE----VSF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~ 562 (830)
...+-.+...|.+.|++++|...|+++.. | + ...|..+...|.+.|++++|+..|++..+. .|+. ..+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 44444455555566666666666655431 1 2 334555555555666666666666665552 2321 123
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 047408 563 ISVLYACSH--------SGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL 633 (830)
Q Consensus 563 ~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 633 (830)
..+..++.. .|++++|...|+.....+ |+. .....+..+....+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 333444444 555555555555554332 221 1111111100000000 0113566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhh----------cCHHHHHHHHHHHHhCCCcCCCceeE
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEA----------EKWEEVKKLREKISRRGLKKNPGCSW 700 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~g~~~~~~~sw 700 (830)
...+...|+++.|+..++++++..|+++ ..+..++.+|... |++++|.+.++...+. .|
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~----~p---- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI----FP---- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----CT----
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----CC----
Confidence 7788999999999999999999999854 4788999999977 9999999999887652 12
Q ss_pred EEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 701 IEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 701 i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.+|...+....|.++..++++
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556777777777776654
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.90 E-value=2.4e-08 Score=108.26 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=164.4
Q ss_pred hhcchhhHHHHHHHHHHHHHhCC-CC----chhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC-----hhhHHHHH
Q 047408 467 ACASLAALERGREIHGYILRHGI-SA----DRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKD-----LISWTIMI 531 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~-~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d-----~~~~~~li 531 (830)
.+...|++++|...+..+.+..- .+ ...++..+...|...|+++.|...+++.. .++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34678999999999999876421 12 34577889999999999999988887643 112 35788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcC--CCC-CcchHHHHHH
Q 047408 532 AGYGMHGFGCDAIATFNDMRQA----GIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECN--IEP-KLEHYACMVD 603 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p-~~~~y~~lv~ 603 (830)
..|...|++++|++.|++..+. |-.+. ..++..+...+...|++++|.++|+....-.. ..| ....+..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 9999999999999999998762 11111 23577788889999999999999998764111 122 2567888999
Q ss_pred HHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 604 LLSRTGNLSEAYRFIEMM----PV--APD-ATIWGSLLCGCRIHHE---VKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
.|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|...+++. ...|+....+..|+.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 999999999999999886 21 233 2445555566777778 77777777762 3334455678899999999
Q ss_pred hcCHHHHHHHHHHHH
Q 047408 674 AEKWEEVKKLREKIS 688 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~ 688 (830)
.|++++|.+.+++..
T Consensus 349 ~g~~~~A~~~~~~al 363 (378)
T 3q15_A 349 SCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988764
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=1.7e-09 Score=100.26 Aligned_cols=139 Identities=10% Similarity=-0.037 Sum_probs=100.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGN 610 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~ 610 (830)
.+...|+.++|++.|++... ..|+.. .+..+...+...|++++|++.|+... .+.|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCc
Confidence 34455666667766666554 234332 45556666777777777777777665 33453 5677778888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 611 LSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEK-VAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 611 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
+++|++.+++. .+.| +..+|..+...+...|+.++|.. .++++++++|+++.+|.+.+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888775 4556 46788888888999998876655 4699999999999999999999988875
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=2.4e-08 Score=117.03 Aligned_cols=167 Identities=11% Similarity=-0.051 Sum_probs=130.0
Q ss_pred HhcCCHHHHHHHhhhCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHc
Q 047408 504 VKCGVLVLARSLFDMIP-----------AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSH 571 (830)
Q Consensus 504 ~k~g~~~~A~~~f~~m~-----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~ 571 (830)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+ ..|+.. .+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 56778888887777654 33566788888888888888888888888887 456544 67777788888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
.|++++|.+.|+...+ +.|+ ...|..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888763 4563 6778888888888999888 8888776 4455 46788888888899999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999988888889998877555
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=2.6e-08 Score=103.73 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHhcCChHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A 543 (830)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 578887777665 3467888999999888876531 12 45889999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--hhHHHHHHHHHHcc-CCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHH
Q 047408 544 IATFNDMRQAGI---EPD--EVSFISVLYACSHS-GLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 544 ~~l~~~m~~~g~---~Pd--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~e 613 (830)
+..|++..+... .+. ..++..+...+... |++++|+.+|+....-+.-..+ ...|..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999876211 111 23678888889996 9999999999987643211111 3567889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHh--hhcCH
Q 047408 614 AYRFIEMM-PVAPD---A-----TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY-----YVLLANVYA--EAEKW 677 (830)
Q Consensus 614 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~ 677 (830)
|++.+++. ...|+ . ..|..+...+...|+++.|+..++++++++|+.... +..|...|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999986 22332 1 156777788899999999999999999999986553 334555554 56788
Q ss_pred HHHHHHHHH
Q 047408 678 EEVKKLREK 686 (830)
Q Consensus 678 ~~A~~~~~~ 686 (830)
++|.+.++.
T Consensus 257 ~~A~~~~~~ 265 (292)
T 1qqe_A 257 SEHCKEFDN 265 (292)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 888887643
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.84 E-value=2e-07 Score=100.93 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=171.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC----ccccccchhhhcchhhHHHHHHHHH
Q 047408 407 NALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD----GVTMACILPACASLAALERGREIHG 482 (830)
Q Consensus 407 ~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~ 482 (830)
......|...|++++|...|++....-.. .+| ..++..+...+...|+.+.|...+.
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPF-------------------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGG-------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhh-------------------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34455677889999999998875432000 111 2345566677788899999999988
Q ss_pred HHHHhCC-----CC-chhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHH
Q 047408 483 YILRHGI-----SA-DRNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 483 ~~~~~g~-----~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
.+++..- .+ ...+++.+...|...|++++|.+.|++... ++ ..+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8776321 11 245778899999999999999999986541 22 347888999999999999999999
Q ss_pred HHHHHc---CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHH
Q 047408 548 NDMRQA---GIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK---LEHYACMVDLLSRTGN---LSEAYRF 617 (830)
Q Consensus 548 ~~m~~~---g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~g~---~~eA~~~ 617 (830)
++..+. ...|+ ..++..+...+.+.|++++|..+++.......-.++ ...+..+...|...|+ +++|++.
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998861 01233 446788888999999999999999988754332222 3456677778888888 9999999
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 618 IEMMPVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 618 ~~~m~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
+++....|+. ..+..+...+...|++++|...+++++++
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9997655543 56677888899999999999999988754
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=7.1e-09 Score=95.97 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=111.0
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
..+...|++++|+..+.... ...|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 44556788999999998765 44553 456667899999999999999999987 5566 578999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH-HHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhH
Q 047408 644 KLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL-REKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKK 722 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~ 722 (830)
++|+..++++++++|+++..|..++.+|.+.|++++|.+. +++..+ .+|+..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--------------------------l~P~~~~ 135 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--------------------------LFPGSPA 135 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--------------------------HSTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------hCcCCHH
Confidence 9999999999999999999999999999999999987765 355442 3566777
Q ss_pred HHHHHHHHH
Q 047408 723 IESLLKRLR 731 (830)
Q Consensus 723 i~~~l~~l~ 731 (830)
++....+|.
T Consensus 136 ~~~l~~~ll 144 (150)
T 4ga2_A 136 VYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.82 E-value=7.3e-08 Score=98.31 Aligned_cols=204 Identities=12% Similarity=0.013 Sum_probs=147.5
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc---hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C---C-hhhH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISAD---RNVANAIVDMYVKCGVLVLARSLFDMIPA--K---D-LISW 527 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~---d-~~~~ 527 (830)
+...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++... | + ...|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455566677788999999999999998864 233 67788899999999999999999998752 2 1 3467
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 047408 528 TIMIAGYGM--------HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA 599 (830)
Q Consensus 528 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 599 (830)
..+...|.. .|++++|+..|++.++. .|+...... +.......... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~-------------a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDD-------------ATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHH-------------HHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHH-------------HHHHHHHHHHH-----HHHHHH
Confidence 778888888 99999999999999984 566542211 11111111111 012355
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCcc--
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM----PVAPD-ATIWGSLLCGCRIH----------HEVKLAEKVAEHVFELEPDNTG-- 662 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~-- 662 (830)
.+...|.+.|++++|++.+++. |-.|. ...|..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788899999999999998886 33332 35677777777655 8999999999999999999863
Q ss_pred -hHHHHHHHHhhhcCHHHHH
Q 047408 663 -YYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 663 -~~~~l~~~y~~~g~~~~A~ 681 (830)
.+..+..++...|+++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 4566777777777666543
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=5.9e-08 Score=99.56 Aligned_cols=230 Identities=10% Similarity=-0.001 Sum_probs=160.9
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC-CCCccccccchhhhcchhhHHHHHHHHHHHHHh-----
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF-EPDGVTMACILPACASLAALERGREIHGYILRH----- 487 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~-~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----- 487 (830)
...|++++|...|++ |++++.+..... +....++..+...+...|++++|...+..+++.
T Consensus 12 ~~~~~~~~A~~~~~~--------------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQ--------------ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL 77 (283)
T ss_dssp -CCSCSSSHHHHHHH--------------HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH--------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc
Confidence 455777777777765 455666555433 233456777788888999999999999988765
Q ss_pred -CC-CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 047408 488 -GI-SADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA- 553 (830)
Q Consensus 488 -g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 553 (830)
+- +....++..+...|...|++++|...|++... + ...+|..+...|...|++++|++.|++..+.
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 23466888999999999999999999987641 1 2457888999999999999999999999874
Q ss_pred -----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhc------CCCCC-cchHHHHHHHHHhcC------CHHHH
Q 047408 554 -----GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYEC------NIEPK-LEHYACMVDLLSRTG------NLSEA 614 (830)
Q Consensus 554 -----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~lv~~l~r~g------~~~eA 614 (830)
+-.|+. .++..+...+...|++++|.++|+...... ...+. ...+..+...+...+ .+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 224433 367788899999999999999999876431 12333 334444444444333 35555
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047408 615 YRFIEMMP-VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 615 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 657 (830)
...++... ..|+ ..+|..|...+...|++++|...+++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55565553 2333 4678889999999999999999999998753
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=1.8e-07 Score=93.05 Aligned_cols=181 Identities=13% Similarity=0.004 Sum_probs=112.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA--KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~ 562 (830)
...+..+...|.+.|++++|...|+++.. |+ ...|..+..+|.+.|++++|++.|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 33445566677778888888888877642 22 235666777788888888888888887773 45443 22
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 047408 563 ISVLYACSH------------------SGLVDEGWRFFNMMRYECNIEPKLE-HYACMVDLLSRTGNLSEAYRFIEMMPV 623 (830)
Q Consensus 563 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~g~~~eA~~~~~~m~~ 623 (830)
..+..++.. .|+.++|...|+.+.+. .|+.. .+.+. .+.+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~----~~l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDAT----KRLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHH----HHHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHH----HHHHHHHHHH--------
Confidence 223333322 34445555555544422 23211 11110 0000000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 624 APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 624 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445567889999999999999999999986 56899999999999999999999988876543
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=5.9e-08 Score=100.65 Aligned_cols=160 Identities=7% Similarity=-0.075 Sum_probs=118.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACM 601 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 601 (830)
+...+..+...+.+.|++++|++.|++..+ ..|+.. .+..+...+...|+.++|...++.+. ...|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~---~~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP---LQDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC---GGGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc---hhhcchHHHHHH
Confidence 344555566667777777777777777776 456544 56666677778888888888877765 234543322222
Q ss_pred -HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHhhhcC
Q 047408 602 -VDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN--TGYYVLLANVYAEAEK 676 (830)
Q Consensus 602 -v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~ 676 (830)
.-.+.+.|+.++|.+.+++. ...| +...+..|...+...|++++|+..++++++.+|++ +..+..|+.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 22356677777788777775 3445 57889999999999999999999999999999998 7889999999999999
Q ss_pred HHHHHHHHHHH
Q 047408 677 WEEVKKLREKI 687 (830)
Q Consensus 677 ~~~A~~~~~~m 687 (830)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 99988776543
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.74 E-value=6.5e-08 Score=100.66 Aligned_cols=198 Identities=10% Similarity=-0.081 Sum_probs=146.7
Q ss_pred hhhcchhhHHHHHHHHHHHHHh----CCCCc-hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHH
Q 047408 466 PACASLAALERGREIHGYILRH----GISAD-RNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMI 531 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~----g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li 531 (830)
..+...|++++|...+..+++. |-+++ ..+++.+..+|.+.|++++|...|++... .+ ..+|+.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456678899999988887664 32222 56888999999999999999999886541 12 35788999
Q ss_pred HHHHhc-CChHHHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc-----hH
Q 047408 532 AGYGMH-GFGCDAIATFNDMRQAGIEPD-------EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE-----HY 598 (830)
Q Consensus 532 ~~~~~~-g~~~~A~~l~~~m~~~g~~Pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~y 598 (830)
..|... |++++|++.|++..+. .|+ ..++..+...+...|++++|+.+|+.......-.+... .|
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999996 9999999999998873 232 23578888999999999999999999874321112221 56
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM-PVAPDAT------IWGSLLCGCR--IHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
..++.++...|++++|.+.+++. .+.|+.. .+..|+.++. ..+++++|...++++.+++|.+.....
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 77888999999999999999997 5555422 3455666664 456799999999999999987644333
No 95
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.73 E-value=5.4e-07 Score=97.14 Aligned_cols=223 Identities=13% Similarity=0.009 Sum_probs=163.8
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCch----hHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCCh----hhHHHHHHH
Q 047408 467 ACASLAALERGREIHGYILRHGISADR----NVANAIVDMYVKCGVLVLARSLFDMIP-----AKDL----ISWTIMIAG 533 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~----~~~~~li~~ 533 (830)
.+...|+++.|...+...++..-..+. .+++.+...|...|++++|.+.+++.. ..+. .+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345678999999999998875422232 256777888999999999999998754 1222 245677888
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCC--CCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC-CC--CcchHHHHHH
Q 047408 534 YGMHGFGCDAIATFNDMRQA----GIE--PDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNI-EP--KLEHYACMVD 603 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~----g~~--Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p--~~~~y~~lv~ 603 (830)
+...|++++|++.|++.... +.. |.. ..+..+...+...|++++|..+++.......- .+ ....|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999998763 222 332 24566777889999999999999987643211 11 1345778889
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhccCCCCcc----hHHHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMM----PVAPDATIWGS-----LLCGCRIHHEVKLAEKVAEHVFELEPDNTG----YYVLLANV 670 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~ 670 (830)
.+...|++++|.+.+++. +...+...|.. ++..+...|+.+.|...++++++..|.+.. .+..++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999999875 21112123332 233477899999999999999988776422 45788999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|...|++++|.+.++...+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999887653
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=5.1e-08 Score=87.07 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=78.4
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 591 IEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 591 ~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
+.|+ .+.+...+..|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 455667778888888888888888775 4445 567888888888888888888888888888888888888888
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.73 E-value=1.4e-07 Score=84.34 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
.|..+...|...|++++|+++|+++.+.+ +.+...+..+...+...|++++|..+|+.+... .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence 46666666777777777777777766532 122334444455555555555555555554321 1
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 606 SRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12345566666666666777777777777777777766677777777777777777777766
Q ss_pred HHHh
Q 047408 686 KISR 689 (830)
Q Consensus 686 ~m~~ 689 (830)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.72 E-value=2.4e-07 Score=82.75 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=85.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 571 (830)
.+..+...|.+.|++++|..+|+++. ..+...|..+...+...|++++|++.|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56788999999999999999999764 4567889999999999999999999999998853 2234456666677777
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
.|++++|.++++.+... .| +...+..++..|.+.|++++|.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 77777777777776532 12 23333344444444444444444433
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=4.8e-08 Score=93.03 Aligned_cols=76 Identities=5% Similarity=-0.005 Sum_probs=61.6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 613 EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN--TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 613 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..|+.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 345555544 3355 47888889999999999999999999999999875 5588999999999999999998877653
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=7.1e-08 Score=89.01 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=89.0
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 590 NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 590 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
.+.|+ ...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45564 566778888899999999999999887 4556 57899999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.+++..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988875
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=2.3e-06 Score=87.70 Aligned_cols=164 Identities=9% Similarity=0.049 Sum_probs=113.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----ChhHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA-----KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-----DEVSF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-----d~~t~ 562 (830)
......+...|...|++++|.+++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHH
Confidence 33444667777778888888888876522 2455677778888888888888888888877 467 35555
Q ss_pred HHHHHH--HHccC--CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CC-C
Q 047408 563 ISVLYA--CSHSG--LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PV----------AP-D 626 (830)
Q Consensus 563 ~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~----------~p-~ 626 (830)
..+..+ ....| .+++|..+|+++..++ |+......+..++.+.|++++|++.++.+ .. .| |
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 566655 33334 8888988998887443 44223334444788889999999888764 11 25 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+.+...++......|+ .|.++++++.+..|+++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 5566566666666676 8899999999999998744
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=8.7e-07 Score=90.78 Aligned_cols=173 Identities=7% Similarity=0.012 Sum_probs=131.4
Q ss_pred HHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHh
Q 047408 512 ARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 512 A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 587 (830)
|...|++.. .++..++..+..+|...|++++|++++.+.+..|-.++.. .+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 3456666788889999999999999999987654333444 566777889999999999999999974
Q ss_pred hcCCCC-----CcchHHHHHHH----HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-
Q 047408 588 ECNIEP-----KLEHYACMVDL----LSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFEL- 656 (830)
Q Consensus 588 ~~~~~p-----~~~~y~~lv~~----l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 656 (830)
..| +.....-|..+ ....++.++|..+|+++ ...|+...-..|+.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456 23444444444 33344999999999998 33455333344455788999999999999988876
Q ss_pred ---------CCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 657 ---------EPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 657 ---------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|+++.++..++.++...|+ +|.++++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 58899999888888888897 89999999986
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=3.1e-07 Score=107.50 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=152.5
Q ss_pred cchhhHHHHHHHHHHHH--------HhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhc
Q 047408 469 ASLAALERGREIHGYIL--------RHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMH 537 (830)
Q Consensus 469 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~ 537 (830)
...|+.++|.+.+..++ +. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 32 24567888899999999999999999999875 45778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHH
Q 047408 538 GFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 538 g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~ 615 (830)
|++++|++.|++..+ +.|+.. .+..+..++...|++++ .+.|+...+ +.|+ ...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 567654 67888899999999999 999998873 4564 678899999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhccCCCCcchHHH
Q 047408 616 RFIEMM-PVAPD-ATIWGSLLCGCRIHHE-----VKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 616 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
+.+++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++..+..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 999998 57787 4678777777766555 344555555555666665554433
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=2.2e-07 Score=106.59 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=124.2
Q ss_pred cCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHH
Q 047408 506 CGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRF 581 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~ 581 (830)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998763 3577899999999999999999999999998 56664 4788888999999999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhc
Q 047408 582 FNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH---HEVKLAEKVAEHVFE 655 (830)
Q Consensus 582 ~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 655 (830)
|+...+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998743 454 678889999999999999999999986 4445 568888999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 047408 656 LEPDNTGYYVLLA 668 (830)
Q Consensus 656 l~p~~~~~~~~l~ 668 (830)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999998888877
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.62 E-value=2.9e-07 Score=90.28 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=113.2
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCC---ChhhHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAK---DLISWTI----------------MIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
...+.+.|++++|...|++.... +...|.. +...|...|++++|+..|++.++ +.|+..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 34455667777777777665422 2334544 88889999999999999999998 567654
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHH
Q 047408 561 -SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGN--LSEAYRFIEMMPVAPDA--TIWGSLL 634 (830)
Q Consensus 561 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~--~~eA~~~~~~m~~~p~~--~~~~~ll 634 (830)
.+..+..++...|++++|...|+.... +.|+ ...+..+...|...|. .+++...++... .|+. ..|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 678888889999999999999999873 4564 6788888888876654 445566666653 4443 3455556
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.++...|++++|+..+++++++.|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66777899999999999999999974
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=7.1e-07 Score=102.37 Aligned_cols=144 Identities=11% Similarity=-0.054 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
|++++|.+.+..+++.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 3345666667777777777777777776543 2345566667777777777777777777
Q ss_pred HHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 047408 549 DMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRT---GNLSEAYRFIEMM 621 (830)
Q Consensus 549 ~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~---g~~~eA~~~~~~m 621 (830)
+..+. .|+. ..+..+..++...|++++|.+.|+...+. .| +...+..+..+|.+. |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77663 4443 35666666677777777777777766532 34 245566666677766 7777777766664
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=1.3e-07 Score=87.20 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=86.8
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 590 NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 590 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44453 556677888899999999999999886 3445 67889999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.++...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887764
No 108
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=1.5e-07 Score=97.16 Aligned_cols=190 Identities=9% Similarity=-0.039 Sum_probs=136.9
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLY 567 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~ 567 (830)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+ +.|+.. .+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45567778888999999999999998764 34778899999999999999999999999887 566654 6778888
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 646 (830)
++...|++++|...|+..... .|+ ...+...+....+.++..+... .......++..+...+ ..+. .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 899999999999999887642 232 1112222222222222222222 2223344455544444 3333 6899999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhh-cCHHHHHHHHHHHHh
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAEA-EKWEEVKKLREKISR 689 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~ 689 (830)
...++++++++|++......+..++.+. +++++|.++++.+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888887 789999999987765
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=1.9e-06 Score=84.70 Aligned_cols=161 Identities=7% Similarity=-0.087 Sum_probs=115.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC----CHHHHHHHHHHhHhhcCCCCCcchH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG----LVDEGWRFFNMMRYECNIEPKLEHY 598 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~y 598 (830)
++.++..+...|...|++++|++.|++..+.| +...+..+...+.. | +.++|.++|+..... + +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 55556666666666677777777777766644 34445555555555 5 677777777776432 2 34566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 599 ACMVDLLSR----TGNLSEAYRFIEMM-PVAPD---ATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 599 ~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..|..+|.. .+++++|.+++++. ...|+ +..+..|...+.. .+|.++|...++++.++ |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 667777766 77888888888886 34443 6778888888877 78999999999999988 677788999
Q ss_pred HHHHHhhh-c-----CHHHHHHHHHHHHhCCC
Q 047408 667 LANVYAEA-E-----KWEEVKKLREKISRRGL 692 (830)
Q Consensus 667 l~~~y~~~-g-----~~~~A~~~~~~m~~~g~ 692 (830)
|+.+|... | ++++|.+.+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999988876553
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.55 E-value=1.7e-06 Score=90.60 Aligned_cols=186 Identities=10% Similarity=-0.017 Sum_probs=134.4
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--hh
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQAG---IEPD--EV 560 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~Pd--~~ 560 (830)
.|+.....|...|++++|...|.+... .+ ..+|+.+...|...|++++|++.|++..+.- -.|. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445556778899999999998876531 12 3478889999999999999999999877521 1222 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HH
Q 047408 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP----KLEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----AT 628 (830)
Q Consensus 561 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~ 628 (830)
++..+...+.. |++++|+.+|+....-+.-.. ....+..+..+|.+.|++++|++.+++. +-.++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 57777788888 999999999998764321111 1457788899999999999999999886 11122 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHhhhcCHHHHHHH
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY-----YVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~A~~~ 683 (830)
.|..++..+...|+++.|...+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 66667777778899999999999999 99976543 33445545 56776665553
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.54 E-value=2.7e-07 Score=82.28 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=85.6
Q ss_pred CCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 047408 555 IEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIW 630 (830)
Q Consensus 555 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 630 (830)
+.|+.. .+......+.+.|++++|++.|+...+ +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 444443 455556667777777777777776653 334 3566777777888888888888877775 4445 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
..+..++...|++++|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999998888777653
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.53 E-value=8.3e-07 Score=87.00 Aligned_cols=157 Identities=11% Similarity=0.057 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHH----------------HHHHHHccCCHHHHHHHHHHhHhhc
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFIS----------------VLYACSHSGLVDEGWRFFNMMRYEC 589 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~ 589 (830)
+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|+...+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-- 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 33445677889999999999999998 567655 4555 77888999999999999998874
Q ss_pred CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHhccCCCCcchH
Q 047408 590 NIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE--VKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 590 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+.| +...+..+..+|...|++++|++.+++. .+.| +..+|..+...+...|+ .+.+...++++....|.. ..+
T Consensus 83 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 83 -KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp -HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred -HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 456 4678889999999999999999999987 4556 46788888888765553 444555666665433332 245
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 665 VLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 665 ~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..++..+...|++++|...+++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5678888889999999999988764
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=1e-06 Score=91.17 Aligned_cols=130 Identities=11% Similarity=0.005 Sum_probs=109.6
Q ss_pred CCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 047408 557 PDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSL 633 (830)
Q Consensus 557 Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~l 633 (830)
|+. ..+..+...+...|++++|...|+.... ..|+ ...+..+..+|.+.|++++|.+.+++. ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 554 3567777888999999999999999874 4564 678889999999999999999999998 456776544433
Q ss_pred HH-HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 634 LC-GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 634 l~-~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.. .+...++.+.|...++++++.+|+++..+..|+.+|...|++++|.+.++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 33 366778888899999999999999999999999999999999999999988765
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.49 E-value=1.7e-06 Score=84.78 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=77.4
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
...+...|++++|.+.|+.. +.|+...|..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 33444555555555555443 2344455555666666666666666666554 2223 456677777777777777
Q ss_pred HHHHHHHHHHhccCCCCc----------------chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 644 KLAEKVAEHVFELEPDNT----------------GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++|...+++++++.|++. ..+..++.+|...|++++|.+.++...+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777666 6777888888888888888888777665
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.48 E-value=2.9e-06 Score=84.17 Aligned_cols=182 Identities=12% Similarity=-0.020 Sum_probs=130.2
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHhCCCC--chhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCC-h---hhHHHHHHH
Q 047408 462 ACILPACASLAALERGREIHGYILRHGISA--DRNVANAIVDMYVKCGVLVLARSLFDMIP--AKD-L---ISWTIMIAG 533 (830)
Q Consensus 462 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d-~---~~~~~li~~ 533 (830)
......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++.. .|+ . ..|..+...
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 334556778899999999999999864221 24577888999999999999999999875 232 2 145445555
Q ss_pred HHh------------------cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc
Q 047408 534 YGM------------------HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595 (830)
Q Consensus 534 ~~~------------------~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 595 (830)
|.. .|+.++|+..|+++++ ..|+........ .+.+ .+...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~---~~l~------~~~~~~~--------- 147 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDAT---KRLV------FLKDRLA--------- 147 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHH---HHHH------HHHHHHH---------
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHH---HHHH------HHHHHHH---------
Confidence 543 5789999999999998 568775322111 1110 0111111
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
...-.+...|.+.|++++|...++++ ...|+ ...|..+..++...|+.++|+..++++....|++..+
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999886 33343 2578888999999999999999999999999987654
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=2.4e-06 Score=88.62 Aligned_cols=164 Identities=8% Similarity=-0.087 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----c
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-----VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----L 595 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 595 (830)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|..+|+.......-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556677888899999999999888774322111 12333445567888999999999887632211112 3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------C
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------N 660 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~ 660 (830)
..|+.+...|...|++++|++.+++. ...|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999988775 11222 258888999999999999999999999876543 1
Q ss_pred cchHHHHHHHHhhhcCHHHH-HHHHHHHH
Q 047408 661 TGYYVLLANVYAEAEKWEEV-KKLREKIS 688 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A-~~~~~~m~ 688 (830)
+..|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788999999999999999 77565543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=1e-05 Score=83.93 Aligned_cols=160 Identities=8% Similarity=-0.088 Sum_probs=120.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHH
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAG-IEPDEV----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYA 599 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~ 599 (830)
..+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+.......-.++ ...|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999988732 122321 2334556677778999999999988753222223 22688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchH
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMMP-------V-APD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TGYY 664 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~ 664 (830)
.+...|.+.|++++|++.++++- . .|. ..+|..+...|...|++++|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998888761 1 122 2478889999999999999999999999876543 5678
Q ss_pred HHHHHHHhhhcC-HHHHHHHHHHHH
Q 047408 665 VLLANVYAEAEK-WEEVKKLREKIS 688 (830)
Q Consensus 665 ~~l~~~y~~~g~-~~~A~~~~~~m~ 688 (830)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699998877664
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.46 E-value=9.1e-07 Score=84.05 Aligned_cols=155 Identities=8% Similarity=-0.074 Sum_probs=115.6
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH--H
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA--C 569 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a--~ 569 (830)
....+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++.... .|+.. +..++.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 34456677888999999999999876 346678888999999999999999999998763 45332 2222221 1
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD---ATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~ 644 (830)
...+...++...|+.... ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 222223346777877763 4564 678888999999999999999999886 45554 568889999999999999
Q ss_pred HHHHHHHHHhc
Q 047408 645 LAEKVAEHVFE 655 (830)
Q Consensus 645 ~a~~~~~~~~~ 655 (830)
+|...+++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987753
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.4e-06 Score=77.38 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=95.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45666777888899999999988876 3445 578899999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHH
Q 047408 674 AEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLE 733 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~ 733 (830)
.|++++|.+.+++..+.. |. ....|...++...|.++..+
T Consensus 85 ~~~~~~A~~~~~~al~~~----p~----------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKD----AE----------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH----HH----------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC----cc----------------cCCchhHHHHHHHHHHHHHh
Confidence 999999999988776521 10 01347777777777766554
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=4.3e-06 Score=81.84 Aligned_cols=144 Identities=8% Similarity=-0.072 Sum_probs=98.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCC
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGL 574 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~ 574 (830)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+. .|+. ..+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3445667777888888888888777777777888888888888888888888887763 3433 356666667777777
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
+++|.+.|+.......-.+... +...| +...|+ ..+|..+...+...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776653211111110 00000 023343 367888888899999999999999999
Q ss_pred hccCCCC
Q 047408 654 FELEPDN 660 (830)
Q Consensus 654 ~~l~p~~ 660 (830)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999986
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=1.3e-06 Score=88.31 Aligned_cols=180 Identities=8% Similarity=-0.072 Sum_probs=137.6
Q ss_pred hcCCHHHHHHHhhhCC---CCChhhHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCChhH-------------
Q 047408 505 KCGVLVLARSLFDMIP---AKDLISWTIM-------IAGYGMHGFGCDAIATFNDMRQAGIEPDEVS------------- 561 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~---~~d~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t------------- 561 (830)
..++.+.|.+.|.++. ......|+.+ ...+...++..+++..+++-.. +.|+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5789999999999875 3355688888 4666666667777776666554 4554331
Q ss_pred ---------HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 047408 562 ---------FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDA----T 628 (830)
Q Consensus 562 ---------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 628 (830)
...+..++...|++++|.+.|+.+.. ..|+....-.+..++.+.|++++|++.|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 22355677889999999999988763 3464335566777899999999999999877444433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELE--PD-NTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++..|..++...|++++|+..++++.+.. |. .+.....++.++.+.|+.++|..+++++..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888889999999999999999998543 55 455788999999999999999999999885
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.4e-06 Score=79.39 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=82.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445566777888889999999888876 3445 67889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.++...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999887764
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.39 E-value=1.7e-05 Score=88.53 Aligned_cols=371 Identities=9% Similarity=-0.020 Sum_probs=203.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCC-hhHHHHHHH
Q 047408 111 SLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID--NGKVFIWNLLMHEYSKTGN-FKESLYLFK 187 (830)
Q Consensus 111 ~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~ 187 (830)
++..|+.+++..+.. |-. |+.+.++.+|+... .|++..|..-+.-..+.+. .+....+|+
T Consensus 10 ~i~~aR~vyer~l~~----------------~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 10 ELSSPSAIMEHARRL----------------YMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp --CCHHHHHHHHHHH----------------HHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred chHHHHHHHHHHHHH----------------CCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 366677777766552 111 88999999998754 3677788887777666653 345666777
Q ss_pred HHHH-cCCCC-CcccHHHHHHHHHhcC-CCCCHHHHHHHHhhCCCCCcchHHHHHHHHHh---CCChhHHHHHHHHHHHC
Q 047408 188 KMQS-LGIAA-DSYTFSCVLKCLAVVG-NSRRVKDAHKLFDELSDRDVVSWNCMISGYIA---NGVAEKGLEVFKEMLNL 261 (830)
Q Consensus 188 ~m~~-~g~~p-~~~t~~~ll~~~~~~g-~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~---~g~~~~A~~l~~~m~~~ 261 (830)
.... -|..| +...|...+..+.... ..+.++.++++|++...--...+..+-..|.. ......+..+..+-.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-- 150 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-- 150 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH--
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh--
Confidence 6654 34333 3344444444332110 00135667777766532101111111111111 111111222211110
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcC--CC-----hHHHHHHHhhcCC---C
Q 047408 262 GFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKC--GD-----LDGAIRVFEKMGE---R 331 (830)
Q Consensus 262 g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~--g~-----~~~A~~~f~~m~~---~ 331 (830)
..+..++.++..+.+.--..+...|...++.--.. |- .+.+..+|+++.. .
T Consensus 151 -------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~ 211 (493)
T 2uy1_A 151 -------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY 211 (493)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC
Confidence 12223333333333211011233444444442221 11 2345567776543 2
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhc---------C---
Q 047408 332 SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEND---------M--- 399 (830)
Q Consensus 332 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g---------~--- 399 (830)
+...|-..+.-+.+.|+.++|..+|++.... |+...+... ++.....+ ++++.+.+.- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~---~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEE---AVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCT---HHHHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchh---HHHHHHHHHHHhhccchhhhhcc
Confidence 4567888888888899999999999999887 665543322 22211111 1233322210 0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchh-hHHHHH
Q 047408 400 QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLA-ALERGR 478 (830)
Q Consensus 400 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~-~~~~a~ 478 (830)
.....+|...++.+.+.+.++.|+.+|+....++ .++...+ .....-...+ +.+.|+
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i---------------------~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFI---------------------YCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHH---------------------HHHHHHHHHHCCSHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHH---------------------HHHHHHHHHCCChHHHH
Confidence 1123567777777778888999999998872221 1111111 0000001123 588899
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 479 EIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 479 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.+++..++.. +.++..+...++...+.|+.+.|+.+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus 341 ~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 341 NIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988864 4445666778888899999999999999984 4577888888877888998888888888774
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.39 E-value=7.9e-06 Score=84.49 Aligned_cols=210 Identities=12% Similarity=0.140 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC--CHHHHHHHhhhCC---CCChhhHHHHHHHH----Hhc---CChH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCG--VLVLARSLFDMIP---AKDLISWTIMIAGY----GMH---GFGC 541 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~d~~~~~~li~~~----~~~---g~~~ 541 (830)
-++|.+..+.++... +.+..+++.--..+...| +++++.+.++.+. .++...|+---..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 357888888888865 456777888888888888 9999999999875 45677888755555 445 7899
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHH--HHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCC------H
Q 047408 542 DAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVD--EGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGN------L 611 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------~ 611 (830)
+++++++++.+. .|.. ..+..-.....+.|.++ +++++++.+... .| +-..|+--..++.+.|+ +
T Consensus 128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999984 5544 46666666777888888 999999999843 34 34556655666777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccC---CCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE-VKLAEKVAEHVFELE---PDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
++++++++++ ...| |...|+-+...+...|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999998876 4455 68999999988888887 444666888888876 8888899999999999999999999999
Q ss_pred HHHh
Q 047408 686 KISR 689 (830)
Q Consensus 686 ~m~~ 689 (830)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.38 E-value=1.3e-06 Score=92.74 Aligned_cols=143 Identities=14% Similarity=0.019 Sum_probs=106.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
+...|..+...|.+.|++++|++.|++.++. .|+...+ ..+++.+.- .. ....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~~--------~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-AL--------RLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-HH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-HH--------HHHHHHHHH
Confidence 3456777777777777788887777777763 4443210 001111110 00 135677888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
.+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888876 4445 5788999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHH
Q 047408 681 K-KLREKI 687 (830)
Q Consensus 681 ~-~~~~~m 687 (830)
. ++++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4 455554
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.36 E-value=7.2e-05 Score=83.42 Aligned_cols=199 Identities=10% Similarity=0.004 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 475 ERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
+....+++.++... +.+..+|-..+..+.+.|+++.|+.+|++.. .++...|.. |+.....++. ++.+.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 34556666666543 4456666666666777777777777776432 222223322 2221111111 222221
Q ss_pred c---------CC-CCC--hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHH
Q 047408 553 A---------GI-EPD--EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTG-NLSEAYRFIE 619 (830)
Q Consensus 553 ~---------g~-~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g-~~~eA~~~~~ 619 (830)
. +. .+. ...|...+....+.+.++.|+.+|+.. ...+ ++...|...+.+-.+.| +.+.|.++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 1 00 111 123555555555666778888888776 2211 12233433333333334 5777777777
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 620 MM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 620 ~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.. ...-++..|...+.-....|+.+.|+.+++++ +.....+....+.-...|+.+.+.++++.+.
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65 12123445666666667777888888888776 2334556666666666788877777555544
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.35 E-value=1.1e-06 Score=92.08 Aligned_cols=197 Identities=9% Similarity=-0.057 Sum_probs=149.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFND 549 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 549 (830)
..|++++|.+++....+..-. . .+...|++++|...|.+ ....|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 367888888888887764321 1 12225889999888765 46778899999999999999
Q ss_pred HHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC--C--CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 047408 550 MRQA----GIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIE--P--KLEHYACMVDLLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 550 m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 620 (830)
..+. |-.+. ..+|..+...+...|++++|+.+|+....-+.-. | ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8763 11111 2368888889999999999999998875432111 1 14577888999988 999999999987
Q ss_pred C-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 621 M-PV---APD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT------GYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 621 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
. .+ ..+ ..++..+...+...|++++|...+++++++.|++. ..+..++.+|...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 111 46788889999999999999999999999877654 2667788889999999999999887
Q ss_pred HH
Q 047408 687 IS 688 (830)
Q Consensus 687 m~ 688 (830)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=4.4e-06 Score=77.80 Aligned_cols=121 Identities=11% Similarity=-0.006 Sum_probs=82.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHH 641 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 641 (830)
+...+...|++++|...|+..... .| +...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 333444444444444444444321 22 2445555666666666666666666654 2233 4677888888899999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHH--HHHHhhhcCHHHHHHHHHHHH
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLL--ANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l--~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++++|...+++++++.|++...+..+ +..+...|++++|.+.++...
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999998877444 445888999999999877654
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.32 E-value=1e-06 Score=89.09 Aligned_cols=194 Identities=10% Similarity=-0.090 Sum_probs=142.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHH-------HHHHHhcCCHHHHHHHhhhCCC--C-------C----------
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAI-------VDMYVKCGVLVLARSLFDMIPA--K-------D---------- 523 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-------i~~y~k~g~~~~A~~~f~~m~~--~-------d---------- 523 (830)
..++...|.+.|..+.+.. +.....|+.+ ...+.+.++..++...+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4688999999999999876 4456667666 4555555555555555544332 1 1
Q ss_pred -----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cc
Q 047408 524 -----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LE 596 (830)
Q Consensus 524 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 596 (830)
...+-.....+...|++++|.++|+.+... .|+.+....+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 012344677888999999999999999874 576665555566788999999999999855321 1 121 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM---PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.+..+..++.+.|++++|++.+++. +..|. ...+..+..+++..|+.++|...++++++.+|+ +.++..|.+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 5777899999999999999999987 33254 347777888899999999999999999999998 766655543
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=3.6e-06 Score=74.98 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=58.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..++.+|..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34444555555555555555555554 2223 467788888888888999999999999999999988888888888887
Q ss_pred hcC
Q 047408 674 AEK 676 (830)
Q Consensus 674 ~g~ 676 (830)
.|+
T Consensus 131 ~~~ 133 (133)
T 2lni_A 131 QYN 133 (133)
T ss_dssp HTC
T ss_pred hcC
Confidence 764
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=5.7e-06 Score=72.48 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVA-PDATIWGSLLCGCRI 639 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~ 639 (830)
+..+...+...|++++|.++|+.+.... ..+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 3333344444444444444444443221 112344555566666666666666666554 222 356778888888889
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc
Q 047408 640 HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 675 (830)
.|+++.|...++++++..|+++..+..++.++...|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999888888888887654
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.31 E-value=1.4e-06 Score=80.28 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=67.3
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWG 631 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~ 631 (830)
.|+.. .+..+...+.+.|++++|..+|+... .+.| +...|..+..+|.+.|++++|++.|++. .+.| ++..|.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 44433 34444555556666666666666554 2334 2455666667777777777777777665 3444 356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.+..++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888753
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.29 E-value=2.2e-05 Score=76.94 Aligned_cols=173 Identities=9% Similarity=-0.095 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-CCChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 047408 477 GREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-AKDLISWTIMIAGYGMHG----FGCDAIATFNDMR 551 (830)
Q Consensus 477 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 551 (830)
|.+.+....+.| ++.....|..+|...|++++|.+.|++.. ..+...+..|...|.. | +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 455666666654 67788889999999999999999999865 4467788888888887 6 8999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHh----cCCHHHHHHHHHh
Q 047408 552 QAGIEPDEVSFISVLYACSH----SGLVDEGWRFFNMMRYECNIEPK---LEHYACMVDLLSR----TGNLSEAYRFIEM 620 (830)
Q Consensus 552 ~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r----~g~~~eA~~~~~~ 620 (830)
+.| +...+..|...+.. .+++++|.++|+... ...|. ...+..|..+|.. .+++++|.+.+++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 45567777777776 889999999999886 33443 6788889999988 8899999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCC
Q 047408 621 M-PVAPDATIWGSLLCGCRIH------HEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 621 m-~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~l~p~ 659 (830)
. ...++...+..|...|... .|.++|...++++.+..+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 7 3334566777777776542 3899999999999887543
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=2.9e-06 Score=74.92 Aligned_cols=94 Identities=18% Similarity=0.059 Sum_probs=84.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+...+.+.|++++|++.+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45566778899999999999999887 4455 678899999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHh
Q 047408 674 AEKWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~ 689 (830)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=3.6e-06 Score=78.72 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445666677777777777777777765 3344 56777778888888888888888888888888888888888888888
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888777654
No 136
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=8.6e-06 Score=70.52 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=68.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555666677777777777777765 2233 566777777777777888888888888888888877778888888888
Q ss_pred hcCHHHHHHHHHHHHh
Q 047408 674 AEKWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~ 689 (830)
.|++++|.+.++...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888887776654
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=3.6e-06 Score=79.78 Aligned_cols=115 Identities=10% Similarity=0.116 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--HH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCG-CRIHHEV--KL 645 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 645 (830)
.|++++|...++..... .| +...+..+...|...|++++|.+.+++. ...| +...|..+... +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44555555555554422 23 3455566666666666666666666654 2223 45666667666 6677777 88
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888777664
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.25 E-value=1.4e-05 Score=77.34 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=77.8
Q ss_pred hcCCHHHHHH---HhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHH
Q 047408 505 KCGVLVLARS---LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVD 576 (830)
Q Consensus 505 k~g~~~~A~~---~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~ 576 (830)
..|++++|.+ .+..-+......|+.+...|...|++++|++.|++.... |..|.. .++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443333333445666666666666666666666665541 111111 12333334444444444
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 577 EGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAP--DATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 577 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
+|.++++...... +..+..| ...++..+...+...|++++|+..+++++
T Consensus 84 ~A~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELL-----------------------------ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------------------HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444444332211 0011111 12345556666666677777777776666
Q ss_pred ccCCC--C----cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 655 ELEPD--N----TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 655 ~l~p~--~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++.+. + ...+..++.+|...|++++|.+.+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 54221 1 1235677788888888888877766554
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.25 E-value=6.7e-06 Score=73.16 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 566778888999999999999999886 5555 67889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999987764
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=5.8e-06 Score=73.10 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=78.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
+..+...+...|++++|..+|+..... .| +...+..+...+...|++++|.+.+++. ...| +..+|..+...+.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 344444445555555555555554422 22 3445556666666667777776666654 2233 4677888888899
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCH
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKW 677 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 677 (830)
..|++++|...+++++++.|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888875
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=5.4e-06 Score=71.13 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD--NTGYYVLLANV 670 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 670 (830)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 556677788888888888888888776 3333 5678888888899999999999999999999999 99999999999
Q ss_pred Hhhh-cCHHHHHHHHHHHHhCC
Q 047408 671 YAEA-EKWEEVKKLREKISRRG 691 (830)
Q Consensus 671 y~~~-g~~~~A~~~~~~m~~~g 691 (830)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999988876543
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=1.3e-06 Score=80.30 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=77.5
Q ss_pred CCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 047408 555 IEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIW 630 (830)
Q Consensus 555 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 630 (830)
+.|+.. .+..+...+...|++++|...|+.... +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 344443 345555666677777777777776653 334 3556667777777888888888777775 3344 45778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..+..++...|++++|+..+++++++.|+++.....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 888888999999999999999999999988766443
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=1.2e-05 Score=70.40 Aligned_cols=95 Identities=19% Similarity=0.306 Sum_probs=85.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778899999999999999999987 2334 57889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999988765
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=6.7e-06 Score=73.88 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=82.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 594 KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 594 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4567777888888888888888888875 3344 4788888999999999999999999999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHh
Q 047408 672 AEAEKWEEVKKLREKISR 689 (830)
Q Consensus 672 ~~~g~~~~A~~~~~~m~~ 689 (830)
...|++++|.+.++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999888765
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.3e-05 Score=72.78 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=71.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|++++|+..+++++++.|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455666677777777777777777765 45565 4667777777778888888888888888888888778888888
Q ss_pred HHhhhcCHHHHHHHHHHHHh
Q 047408 670 VYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 670 ~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887776654
No 146
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=5.3e-06 Score=77.38 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCE
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGK 706 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~ 706 (830)
..+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-----------------
Confidence 467888888999999999999999999999999999999999999999999999999887764
Q ss_pred EEEEEeCCcCCCChh-HHHHHHHHHHHHHHH
Q 047408 707 VNIFVAGGSSHPHAK-KIESLLKRLRLEMKR 736 (830)
Q Consensus 707 ~~~f~~~~~~~p~~~-~i~~~l~~l~~~~~~ 736 (830)
..|... .+...|..+...+++
T Consensus 126 ---------l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 126 ---------NHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp ---------HCGGGHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCCCHHHHHHHHHHHHHHHHH
Confidence 356665 677778877777665
No 147
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=2.4e-06 Score=95.30 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=83.9
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
+...|++++|.++|+...+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555666665555542 2342 556666777777777777777777765 3445 46788999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHH--HhhhcCHHHHHHHHHH
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANV--YAEAEKWEEVKKLREK 686 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 686 (830)
|+..++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999888 8999999999998763
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.20 E-value=1.3e-06 Score=84.73 Aligned_cols=171 Identities=6% Similarity=-0.050 Sum_probs=107.9
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC
Q 047408 497 NAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG 573 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 573 (830)
+..+......|.+++|.+.++..... ....|..+...+...|++++|++.|++..+ +.|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 44455566677778877777654322 345677778888888999999999888887 33333211100
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 574 LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
..+.-. ..+ ....|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|+..++
T Consensus 78 ~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 000 1245667778888888888888888776 3344 56788889999999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHH-HHHHHHH
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVK-KLREKIS 688 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~ 688 (830)
++++++|+++..+..++.++...|+.+++. ..++.|-
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888877 4444443
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.17 E-value=3e-06 Score=77.19 Aligned_cols=113 Identities=10% Similarity=-0.002 Sum_probs=78.4
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWG 631 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~ 631 (830)
.|+.. .+..+...+...|++++|..+|+.... ..| +...|..+..+|.+.|++++|++.+++. ...| +...|.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34333 344455556666777777777766653 234 3556667777777788888888777775 3344 456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
.+..++...|++++|...+++++++.|+++........+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 8888899999999999999999999998887765554433
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=1.8e-05 Score=69.91 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456778888999999999999999986 3344 67889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999988765
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.16 E-value=8.3e-05 Score=76.90 Aligned_cols=158 Identities=10% Similarity=-0.102 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCC---Ch-----h-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHH
Q 047408 499 IVDMYVKCGVLVLARSLFDMIPAK---DL-----I-SWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDE----VSFIS 564 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~~~---d~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~----~t~~~ 564 (830)
.+..+.+.|++++|...+++.... +. . .+..+...|...|++++|++.|++....... +|. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999875432 11 1 3334666777788999999999999984333 232 15888
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcC----CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECN----IEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD-ATIWG 631 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 631 (830)
+..++...|++++|..+|+.+..... ..|. ...|..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999998874222 1121 347888999999999999999998875 12233 57888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhcc
Q 047408 632 SLLCGCRIHH-EVKLAEKVAEHVFEL 656 (830)
Q Consensus 632 ~ll~~~~~~g-~~~~a~~~~~~~~~l 656 (830)
.+...+...| +.++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999 579999999988754
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=1.8e-06 Score=78.91 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFEL-------EPDNTGYY----VLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..|..+..++...|++++|+..+++++++ +|+++..| ..++.+|...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888889999999988888888 99998888 9999999999999999998887754
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.15 E-value=5.2e-06 Score=73.92 Aligned_cols=93 Identities=6% Similarity=0.038 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-------hHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG-------YYVLL 667 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l 667 (830)
.+..++..+.+.|++++|++.|++. .+.| +..+|..+..++...|++++|+..++++++++|++.. .|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566788889999999999999886 4556 4788999999999999999999999999999988754 57778
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999887653
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=8.7e-06 Score=77.08 Aligned_cols=127 Identities=10% Similarity=0.065 Sum_probs=95.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHH-HHhcCCH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDL-LSRTGNL 611 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~-l~r~g~~ 611 (830)
...|++++|++.|++..+. .|+ ...+..+...+...|++++|..+|+..... .| +...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 4567788888888887774 444 456777778888888999998888887643 34 45667777888 7788998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 612 --SEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 612 --~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999998886 3445 46788889999999999999999999999999998665433
No 155
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=1.9e-05 Score=69.93 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHH
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM-PVAPDA----TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLLANV 670 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~ 670 (830)
-.+...+.+.|++++|.+.+++. ...|+. .+|..+...+...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677788888888877765 222322 467777778888899999999999999888888 6678888999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|...|++++|.+.++...+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999988887764
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.6e-05 Score=69.86 Aligned_cols=117 Identities=10% Similarity=-0.055 Sum_probs=75.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
+...|..+...+...|++++|++.|++..+ ..|+... ....+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 445666666666666667767666666665 3454200 023344455
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..|.+.|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|++...+..+..+..+
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 5555556666665555543 2233 466777888888889999999999999999999988777766666543
No 157
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.07 E-value=0.00012 Score=75.64 Aligned_cols=228 Identities=7% Similarity=-0.018 Sum_probs=166.2
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccc-cccchhhhcchh--hHHHHHHHHHHHHHhCCC
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVT-MACILPACASLA--ALERGREIHGYILRHGIS 490 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~ 490 (830)
.+....++|+.+++.+...| |+..| ++.--..+..++ .++++.+....+++.. +
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n----------------------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-P 100 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL----------------------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-E 100 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-T
T ss_pred HcCCCCHHHHHHHHHHHHHC----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-c
Confidence 33344467888877765443 33322 222223334455 8999999999998865 4
Q ss_pred CchhHHhHHHHHH----Hhc---CCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCC
Q 047408 491 ADRNVANAIVDMY----VKC---GVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGC--DAIATFNDMRQAGIEPD 558 (830)
Q Consensus 491 ~~~~~~~~Li~~y----~k~---g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~Pd 558 (830)
.+..+++.-...+ .+. ++++++..+++.+. .+|..+|+--.-.+.+.|.++ ++++.+++|.+. .|.
T Consensus 101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~ 178 (306)
T 3dra_A 101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLK 178 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTT
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCC
Confidence 5566666555445 555 78999999999875 567889988888888889888 999999999985 444
Q ss_pred h-hHHHHHHHHHHccCC------HHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----C
Q 047408 559 E-VSFISVLYACSHSGL------VDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSE-AYRFIEMM-PV----A 624 (830)
Q Consensus 559 ~-~t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e-A~~~~~~m-~~----~ 624 (830)
. ..+..-.....+.|. +++++++++.+.. ..| +...|+-+..++.+.|+..+ +.++.++. .. .
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 3 456555555666665 8999999998874 456 46778888888999888554 55677775 22 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCcchHHHHHH
Q 047408 625 PDATIWGSLLCGCRIHHEVKLAEKVAEHVFE-LEPDNTGYYVLLAN 669 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-l~p~~~~~~~~l~~ 669 (830)
.++..|..|...+...|+.++|..+++++.+ .+|-...++...++
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 3678899999999999999999999999996 89998877765544
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.06 E-value=2.8e-05 Score=80.56 Aligned_cols=162 Identities=7% Similarity=-0.133 Sum_probs=114.9
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC---CCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hh
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP---AKDL------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI---EPD--EV 560 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~Pd--~~ 560 (830)
.+...+..|...|++++|.+.++... .... ..+..+...|...|++++|++.|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888899999988886432 1111 2234455667788899999999998875321 122 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC------CCC-H
Q 047408 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-----LEHYACMVDLLSRTGNLSEAYRFIEMM-PV------APD-A 627 (830)
Q Consensus 561 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~------~p~-~ 627 (830)
+++.+...+...|++++|..+|+.........|+ ...|..+...|.+.|++++|++.+++. .+ ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888899999999999999887633222333 257788889999999999999988875 11 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 047408 628 TIWGSLLCGCRIHHEVKLA-EKVAEHVFEL 656 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~l 656 (830)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778887643
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.06 E-value=4.9e-05 Score=73.28 Aligned_cols=151 Identities=14% Similarity=0.014 Sum_probs=98.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC------C---ChhhHHHHHHHHHhcCC
Q 047408 469 ASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA------K---DLISWTIMIAGYGMHGF 539 (830)
Q Consensus 469 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------~---d~~~~~~li~~~~~~g~ 539 (830)
...|++++|.++...+.. .......+++.+...|...|++++|...|++... . ....|+.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356888999885555433 2224677889999999999999999999987542 1 34578888999999999
Q ss_pred hHHHHHHHHHHHHcC-CCC-C----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcC
Q 047408 540 GCDAIATFNDMRQAG-IEP-D----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTG 609 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g-~~P-d----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g 609 (830)
+++|++.|++..+.- -.| + ...+..+...+...|++++|..+++.......-.++ ...+..+..++.+.|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 999999999987620 022 2 124566667777888888888888766432111111 122345555555566
Q ss_pred CHHHHHHHHHh
Q 047408 610 NLSEAYRFIEM 620 (830)
Q Consensus 610 ~~~eA~~~~~~ 620 (830)
++++|.+.+++
T Consensus 162 ~~~~A~~~~~~ 172 (203)
T 3gw4_A 162 NLLEAQQHWLR 172 (203)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66665555544
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=3.1e-05 Score=66.91 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=65.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH 640 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 640 (830)
.+...+...|++++|...|+..... .| +...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3333444444444444444444321 12 2344555555566666666666666554 2233 466788888888889
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
|++++|...++++++++|+++..+..++.+.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999998887777666554
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=2.5e-05 Score=69.02 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=79.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHH
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-------TGYYVL 666 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~ 666 (830)
..+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777888888888888888876 2233 57788888888999999999999999999998876 778899
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988775
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.01 E-value=2.2e-05 Score=83.17 Aligned_cols=93 Identities=10% Similarity=-0.018 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----------------ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
.+..+...|.+.|++++|++.|++. .+.|+ ..+|..+..++...|++++|+..++++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3444455555555555555555443 12222 478999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 660 NTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 660 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++..|..++.+|...|++++|.+.+++..+
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988775
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=5.4e-05 Score=73.11 Aligned_cols=114 Identities=13% Similarity=0.014 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM----PVAPD--------------ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.+..+...+.+.|++++|++.+++. |..|+ ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3445556666666666666666654 11221 36788888899999999999999999999999
Q ss_pred CCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 659 DNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 659 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
+++..+..++.+|...|++++|.+.++...+ .+|....++..+..+...+.+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS--------------------------LNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------------------------HCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887764 246666777777776665543
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=1.6e-05 Score=88.53 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=50.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~ 611 (830)
|.+.|++++|++.|++..+ ..|+ ...+..+..++.+.|++++|.+.++...+ +.|+ ...|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 3344555555555555544 2333 22444444555555555555555555442 2332 34445555555555555
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAPD-ATIWGSLLCG--CRIHHEVKLAEKVAE 651 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~ 651 (830)
++|++.+++. ...|+ ...|..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555543 12221 2233333333 445555666666555
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.00 E-value=1.9e-05 Score=73.71 Aligned_cols=104 Identities=16% Similarity=0.055 Sum_probs=72.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
+..+...+...|++++|+++|+.... +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+...+.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444455555555555555555542 223 3455666677777777777777777665 3345 4778889999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
..|++++|+..++++++++|+++..+...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999988665544
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.1e-05 Score=69.59 Aligned_cols=105 Identities=10% Similarity=-0.072 Sum_probs=65.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH 640 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 640 (830)
.+...+...|++++|...|+.... +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 333444445555555555554442 123 2445556666666666666666666654 3344 466777888888888
Q ss_pred CCHHHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELE------PDNTGYYVLLANVY 671 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 671 (830)
|++++|...++++++++ |++......+..+.
T Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 86 KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888 77766666555443
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=4.3e-05 Score=84.61 Aligned_cols=142 Identities=11% Similarity=0.016 Sum_probs=102.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
...|..+...|.+.|++++|+..|++.++ +.|+...+. -++..+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~-----------~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLS-----------EKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCC-----------HHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCC-----------hHHHHH-HHHH--------HHHHHHHHHH
Confidence 45677778888888888888888888876 334332110 011111 1111 1356778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988886 4445 57889999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHH
Q 047408 682 KL-REKI 687 (830)
Q Consensus 682 ~~-~~~m 687 (830)
+- ++.|
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 53 4444
No 168
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.97 E-value=6.7e-05 Score=69.52 Aligned_cols=125 Identities=13% Similarity=-0.025 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVD 603 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~ 603 (830)
.|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|.+.|+..... .| +...+..+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 4455555566666666666666666552 33 2334555555666666666666666665532 23 3455666666
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHhc
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAP-DATIWG--SLLCGCRIHHEVKLAEKVAEHVFE 655 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 655 (830)
+|.+.|++++|.+.+++. ...| +...|. .+...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 667777777777666665 2223 333442 233335566777777777766543
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=6.8e-06 Score=71.86 Aligned_cols=83 Identities=23% Similarity=0.173 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 607 RTGNLSEAYRFIEMM-PV---APD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 607 r~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
..|++++|++.+++. .. .|+ ..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 457777788877776 34 243 4678888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 047408 682 KLREKISR 689 (830)
Q Consensus 682 ~~~~~m~~ 689 (830)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=5.7e-05 Score=83.60 Aligned_cols=128 Identities=11% Similarity=0.068 Sum_probs=92.1
Q ss_pred HHccCCHHHHHHHHHHhHhhcC--CCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECN--IEPK----LEHYACMVDLLSRTGNLSEAYRFIEMM---------PVAPDA-TIWGS 632 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ 632 (830)
+...|++++|..+++....... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655433211 1221 345777777888888888888777764 345653 67899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-----cCCCCcch---HHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCC
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFE-----LEPDNTGY---YVLLANVYAEAEKWEEVKKLREKISRRGLKKNP 696 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~ 696 (830)
|...|...|++++|+.+++++++ +.|+++.+ ...|...+..+|++++|+.+++.++++-.+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998875 57887654 567888899999999999999999886544433
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.89 E-value=0.00015 Score=75.63 Aligned_cols=211 Identities=15% Similarity=0.101 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCC---CCChhhHHHHHHHHHhc-C-ChHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIP---AKDLISWTIMIAGYGMH-G-FGCDAIAT 546 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~-g-~~~~A~~l 546 (830)
..++|.++.+.++... +.+..+++.--..+...| .++++.+.++.+. .++..+|+--...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457888888888866 456777888777788888 5999999999875 45778898877777776 7 89999999
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHccCCHH--------HHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCC------
Q 047408 547 FNDMRQAGIEPDE-VSFISVLYACSHSGLVD--------EGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGN------ 610 (830)
Q Consensus 547 ~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------ 610 (830)
++++.+ ..|.. ..+..-.....+.|..+ +++++++.+.+. .| +...|+-...++.+.|+
T Consensus 148 ~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 148 IHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 999997 45544 35555444455555555 899999988753 35 45667777777888776
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 047408 611 -LSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV--------------------KLAEKVAEHVFELE------PDNT 661 (830)
Q Consensus 611 -~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~l~------p~~~ 661 (830)
+++++++++++ ...| |...|+-+-+.+...|+. ......+..++... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 78999998876 4455 678999887777766653 22333333333322 4556
Q ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 662 GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 662 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+...|+++|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6778999999999999999999998864
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.88 E-value=4.4e-05 Score=78.48 Aligned_cols=110 Identities=6% Similarity=-0.186 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047408 559 EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLC 635 (830)
Q Consensus 559 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 635 (830)
...+..+...+...|++++|..+|+.... ..| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566677778888888888888887764 345 4667777888888888888888888775 5556 4567777878
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
++...|++++|+..++++++++|+++..+..+++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 888888888888888888888887765544443333
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.86 E-value=6.3e-05 Score=67.31 Aligned_cols=96 Identities=7% Similarity=-0.141 Sum_probs=62.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047408 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGC 637 (830)
Q Consensus 561 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 637 (830)
.+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4444445555555555555555554422 23 2445566666666667777776666654 2334 467788888888
Q ss_pred HhcCCHHHHHHHHHHHhccCCC
Q 047408 638 RIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
...|+++.|+..+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 8888999999999988888887
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=2.2e-05 Score=71.68 Aligned_cols=116 Identities=14% Similarity=-0.021 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDL 604 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 604 (830)
.|......+.+.|++++|++.|++.++ +.|+...- ++. ...| +...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a~----------~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EAF----------DHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SCC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hhh----------hhccchHHHHHHHHHH
Confidence 455556666777777777777777776 44541100 000 0000 01145555555
Q ss_pred HHhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 605 LSRTGNLSEAYRFIEMM--------PVAPD-ATIW----GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
+.+.|++++|++.+++. .+.|| ...| .....++...|++++|+..++++++++|++.+.+.-+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 55556655555555443 34886 4688 9999999999999999999999999999998876655
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=6e-05 Score=80.77 Aligned_cols=137 Identities=11% Similarity=0.011 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~ 603 (830)
..|..+...|.+.|++++|++.|++.++. .|+.. ..-..+++. .+.| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 46778888888889999999988888762 11110 000111111 1222 2467888899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...|+.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 5666 46889999999999999999999999999999999999999999999999998886
Q ss_pred HH
Q 047408 682 KL 683 (830)
Q Consensus 682 ~~ 683 (830)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=7e-05 Score=80.27 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECC
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKG 705 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~ 705 (830)
+..+|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---------------- 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---------------- 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------
Confidence 3578889999999999999999999999999999999999999999999999999999988764
Q ss_pred EEEEEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 706 KVNIFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 706 ~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
..|...++...|..+...++
T Consensus 336 ----------l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 336 ----------IAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp ----------HCTTCHHHHHHHHHHHHHHH
T ss_pred ----------hCCCCHHHHHHHHHHHHHHH
Confidence 24556677777776665554
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=8e-05 Score=68.35 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
+|..+...|...|++++|++.|++..+.... ++... ....+..+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~ 58 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------------------ERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------------------HHHHHHHHHHH
Confidence 5666666777777777777777776642100 11100 01233444444
Q ss_pred HHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------CcchHHHHHHH
Q 047408 605 LSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------NTGYYVLLANV 670 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~ 670 (830)
|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. .+..+..++.+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 55555555555544443 00111 345666667777778888888888777755321 23467888999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 9999999999988876543
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=9.5e-05 Score=81.09 Aligned_cols=187 Identities=6% Similarity=-0.149 Sum_probs=127.7
Q ss_pred HHHhcCCHHHHHHHhhhCCCC-----C---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChh
Q 047408 502 MYVKCGVLVLARSLFDMIPAK-----D---------------LISWTIMIAGYGMHGFGCDAIATFNDMRQA-GIEPDEV 560 (830)
Q Consensus 502 ~y~k~g~~~~A~~~f~~m~~~-----d---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~ 560 (830)
-+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|++.+.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345566777777766654311 0 013667888889999999999988887652 1112222
Q ss_pred H----HHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC
Q 047408 561 S----FISVLYACSHSGLVDEGWRFFNMMRYEC---NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-----P--VAP 625 (830)
Q Consensus 561 t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~--~~p 625 (830)
+ ...+-..+...|..+++.+++....... +..+. ...+..++..|...|++++|.+++++. . .+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1 2222233445688999998887764321 22222 456778899999999999999998875 1 123
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---CC----cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 626 D-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP---DN----TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 626 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p---~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
. ..++..++..|...|+++.|...+++++...| ++ ...+..++.+|...|+|++|.+.+...-
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 35788888899999999999999998876532 22 2457788899999999999988776553
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.80 E-value=6.1e-05 Score=66.87 Aligned_cols=59 Identities=7% Similarity=-0.061 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
.|..+...|.+.|++++|++.|++.++ +.|+.. .|..+..++.+.|++++|++.|+...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 455566666666666667666666665 345443 45555566666666666666666554
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.79 E-value=0.0001 Score=62.89 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP---DATIWGSLLCGC 637 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 637 (830)
..+...+...|++++|..+|+..... .| +...+..+..+|.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 33334444445555555554444321 12 2344555666666666666666666654 2233 366777777788
Q ss_pred Hhc-CCHHHHHHHHHHHhccCCCCc
Q 047408 638 RIH-HEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 638 ~~~-g~~~~a~~~~~~~~~l~p~~~ 661 (830)
... |+.++|...++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888754
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.79 E-value=5e-05 Score=66.76 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRI 639 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 639 (830)
..+...+...|++++|...|+.... ..| +...|..+..++.+.|++++|++.+++. .+.| +...|..|...+..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444455566666666666666553 234 3556666777777777777777777765 3445 46778888888888
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 047408 640 HHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8899999999999998888764
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00018 Score=79.64 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 478888999999999999999999999999999999999999999999999999999998875
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.74 E-value=0.00018 Score=63.49 Aligned_cols=98 Identities=14% Similarity=0.007 Sum_probs=59.9
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPKL----EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGC 637 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~ 637 (830)
..+...|++++|...|+..... .|+. ..+..+..+|.+.|++++|.+.+++. ...|+ ..++..+...+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3344455555555555554432 1221 24555566666666666666666654 22232 45566777778
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
...|+.++|...++++++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 888889999999998888888876544433
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.73 E-value=0.00074 Score=70.12 Aligned_cols=208 Identities=10% Similarity=0.042 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC----------HHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC--h
Q 047408 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGV----------LVLARSLFDMIP---AKDLISWTIMIAGYGMHGF--G 540 (830)
Q Consensus 476 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~----------~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~--~ 540 (830)
+|......++... +.+..+++.--..+...|. ++++..+++.+. .++..+|+--.-.+...|+ +
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 4555555555533 2233444433333322222 567777777654 5577788877777777774 7
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCC-HHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhc---------
Q 047408 541 CDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGL-VDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRT--------- 608 (830)
Q Consensus 541 ~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------- 608 (830)
+++++.++++.+. .|.. ..++.-...+.+.|. +++++++++.+... .| +...|+-...++.+.
T Consensus 127 ~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 127 ARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccc
Confidence 8888888888884 4443 356555556667777 68888888888743 34 344555555555444
Q ss_pred -----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 609 -----GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH-----------HEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 609 -----g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
+.++++++++++. ...| |..+|+-+-+.+... +.++++...++++++++|++.-.+..++.+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 5678888888876 3445 678888666655444 457888899999999999885444333322
Q ss_pred H---hhhcCHHHHHHHHHHHHh
Q 047408 671 Y---AEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y---~~~g~~~~A~~~~~~m~~ 689 (830)
. ...|..+++...+.++.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHH
Confidence 1 235666677777666654
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0003 Score=79.72 Aligned_cols=167 Identities=8% Similarity=0.042 Sum_probs=134.4
Q ss_pred CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccC
Q 047408 508 VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF----------GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSG 573 (830)
Q Consensus 508 ~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g 573 (830)
.-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+ ..|+.. .|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 3467788887765 4466788877777777777 8999999999998 456554 6777777788888
Q ss_pred --CHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 047408 574 --LVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG-NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH------- 640 (830)
Q Consensus 574 --~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 640 (830)
++++++++++.+.+ +.| +...|+--..++.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 77999999999984 345 4566777777888889 899999999998 5566 678999888877653
Q ss_pred -------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 641 -------HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 641 -------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
+.++++...++++++++|++..+|.-+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998555
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.71 E-value=0.00023 Score=62.57 Aligned_cols=115 Identities=6% Similarity=-0.088 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++...... |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 34555566666666666666666666553 23 22334444444455555555555554443211 00
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..++ ..+|..+...+...|+++.|...+++++++.| ++.....+..++..
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0122 45666777777888888888888888888877 45555555555443
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.71 E-value=5.4e-05 Score=80.12 Aligned_cols=147 Identities=9% Similarity=-0.057 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677788888999999999999887 4565542 233444444443321 1367788889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-hhhcCHHHHH
Q 047408 605 LSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY-AEAEKWEEVK 681 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~~A~ 681 (830)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886 4455 5778999999999999999999999999999999999999998884 4556777888
Q ss_pred HHHHHHHhCC
Q 047408 682 KLREKISRRG 691 (830)
Q Consensus 682 ~~~~~m~~~g 691 (830)
++++.|-+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.69 E-value=5.9e-05 Score=70.09 Aligned_cols=123 Identities=13% Similarity=0.007 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-Ccch
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAG------IEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEH 597 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 597 (830)
..|......+.+.|++++|+..|++.+..- -.|+...+ . . +.| +...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~---~------~~~~~~~~ 65 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------V---E------LDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------H---H------HHHTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------H---H------HHHHHHHH
Confidence 456667777777778888877777776520 01111100 0 0 012 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-chHHHHHHHHhh
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT-GYYVLLANVYAE 673 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~~ 673 (830)
|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....|..+...
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 777888888899999998888776 4455 467899999999999999999999999999999987 555555544443
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.68 E-value=0.0012 Score=68.54 Aligned_cols=239 Identities=9% Similarity=0.007 Sum_probs=159.6
Q ss_pred HhcCCh-HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc
Q 047408 414 AKCGSM-ADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISAD 492 (830)
Q Consensus 414 ~k~g~~-~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 492 (830)
.+.|.+ ++|+.+++.+...|+-.+++.-.=-.++..+.....|+ .....++++..+...+++.. +.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~-----------~~~~~l~~EL~~~~~~L~~~-PKn 107 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE-----------ESAALVKAELGFLESCLRVN-PKS 107 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccch-----------hhhHHHHHHHHHHHHHHHhC-CCC
Confidence 345555 47899888887665433332221001111111100011 01223677888888888765 567
Q ss_pred hhHHhHHHHHHHhcC--CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChh-HHHHH
Q 047408 493 RNVANAIVDMYVKCG--VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF-GCDAIATFNDMRQAGIEPDEV-SFISV 565 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~Pd~~-t~~~l 565 (830)
..+|+--...+.+.| .++++..+++.+. .+|...|+--.-.+...|. ++++++.++++.+. .|+.. .++..
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R 185 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 888888777788888 4899999999876 5677899888888888888 59999999999985 45444 45554
Q ss_pred HHHHHcc--------------CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc-----------CCHHHHHHHHH
Q 047408 566 LYACSHS--------------GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRT-----------GNLSEAYRFIE 619 (830)
Q Consensus 566 l~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~-----------g~~~eA~~~~~ 619 (830)
...+.+. +.++++++++.... .+.|+ ...|+-+-.++.+. +.++++++.++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 4444443 56889999998877 34564 55666566666665 56899999998
Q ss_pred hC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 620 MM-PVAPDATIWGSLLCGC-----RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 620 ~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
++ .+.||. .|.-+-.+. ...|..++....++++.+++|...+.|.-|..-
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 87 567775 565332222 245788899999999999999977776655443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.67 E-value=0.00015 Score=66.50 Aligned_cols=136 Identities=12% Similarity=-0.064 Sum_probs=82.1
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA-----KDL----ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI-EPD---- 558 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd---- 558 (830)
..++..+...|...|++++|...|++... .+. .++..+...|...|++++|++.|++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778889999999999999999987542 121 3677777888888888888888888765210 011
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 047408 559 EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAP-DATIWGSLLCGC 637 (830)
Q Consensus 559 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~ 637 (830)
...+..+...+...|++++|.++++..... .++.+..+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 113334444455555555555555443311 00111111 123455566667
Q ss_pred HhcCCHHHHHHHHHHHhccC
Q 047408 638 RIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~ 657 (830)
...|++++|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77777777777777766543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=5.3e-05 Score=80.19 Aligned_cols=111 Identities=9% Similarity=-0.063 Sum_probs=87.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 641 (830)
+..+...+...|++++|...|+.... +.|+.. .+...|+.+++...+. ..+|..+..++...|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHcC
Confidence 44556677788889999998888763 233321 2334455556555442 137888889999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988764
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=6.6e-05 Score=64.24 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TGYYVL 666 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 666 (830)
...+..+...+.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456677888888999999999988876 3444 57889999999999999999999999999999998 677788
Q ss_pred HHHHHhhhcCHHHHHHH
Q 047408 667 LANVYAEAEKWEEVKKL 683 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~ 683 (830)
++.++...|++++|.+.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 88888888877766544
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00031 Score=76.93 Aligned_cols=158 Identities=9% Similarity=-0.052 Sum_probs=118.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPDE----------------VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 595 (830)
..+...|++++|++.|.+..+....... ..+..+...|...|++++|.+++..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999999884322111 136778899999999999999999876543333332
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------C
Q 047408 596 ----EHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFEL------E 657 (830)
Q Consensus 596 ----~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~ 657 (830)
...+.+...+...|+.++|.++++.. ...+. ..++..|...+...|++++|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344555566789999999888765 23333 467888999999999999999999988653 2
Q ss_pred CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 658 PDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 658 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|.....|..++.+|...|+|++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33345789999999999999999999877653
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.61 E-value=3.4e-05 Score=67.33 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
.|++++|+..|+.......-.| +...+..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555542100013 2455666777777777777777777765 3344 46778888888888999999999
Q ss_pred HHHHHhccCCCCcchHH
Q 047408 649 VAEHVFELEPDNTGYYV 665 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~ 665 (830)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999888875543
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00013 Score=80.82 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=89.7
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---chHH
Q 047408 604 LLSRTGNLSEAYRFIEMM---------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDNT---GYYV 665 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~ 665 (830)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988775 23444 36899999999999999999999999885 456665 4688
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.|+.+|..+|++++|..++++..+--. +. -...||...++..+|...+.+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VT-----------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HH-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887754110 00 124699999999998887766654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00014 Score=63.02 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=65.4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 613 EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 613 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555554 4445 5788889999999999999999999999999999999999999999999999999999887764
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.0002 Score=60.29 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+..+|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999887654
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=4.3e-05 Score=69.57 Aligned_cols=84 Identities=12% Similarity=0.053 Sum_probs=66.3
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 606 SRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE----------VKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556677777777665 3444 45666666666665554 5699999999999999999999999999998
Q ss_pred hc-----------CHHHHHHHHHHHHh
Q 047408 674 AE-----------KWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g-----------~~~~A~~~~~~m~~ 689 (830)
.| ++++|.+.+++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 85 89999999998875
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.56 E-value=0.00024 Score=58.05 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=66.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777788888888888888775 3334 56788888888999999999999999999999999999999998887
Q ss_pred hhc
Q 047408 673 EAE 675 (830)
Q Consensus 673 ~~g 675 (830)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 665
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.40 E-value=0.00018 Score=78.45 Aligned_cols=113 Identities=8% Similarity=0.036 Sum_probs=80.0
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---chHHH
Q 047408 605 LSRTGNLSEAYRFIEMM---------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDNT---GYYVL 666 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~ 666 (830)
+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..|..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666655543 12222 35778888888888888888888888774 345554 46888
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 667 LANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
|+.+|..+|++++|..++++..+-- .+. -...||...+++..|++...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~-~~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM-RVT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH-HHh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988775410 010 12469999999999998888876
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.37 E-value=0.0006 Score=56.38 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 624 APDATIWGSLLCGCRIHHE---VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 624 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
++|+..|..+..++...++ .++|..+++++++++|+++.....+++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567888888888765555 79999999999999999999999999999999999999999999987543
No 202
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.33 E-value=0.0037 Score=65.18 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=125.6
Q ss_pred CCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHcc-C-CHHHHH
Q 047408 507 GVLVLARSLFDMIP---AKDLISWTIMIAGYGMHG-FGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHS-G-LVDEGW 579 (830)
Q Consensus 507 g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~-g-~~~~a~ 579 (830)
+.-++|.++++.+. ..+...||.--..+...| .++++++.++.++. ..|...+ ++.-...+.+. + ..++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34457777777664 446678998888888888 59999999999998 5676664 55544555555 6 789999
Q ss_pred HHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHH--------HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC------
Q 047408 580 RFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLS--------EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE------ 642 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~--------eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~------ 642 (830)
++++.+. ...|. -..|+--..++.+.|.++ +++++++++ ...| |...|+-........+.
T Consensus 146 ~~~~k~L---~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSL---LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHT---SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999987 45564 445554444555555555 889988887 3445 78899988888877776
Q ss_pred -HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCH
Q 047408 643 -VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKW 677 (830)
Q Consensus 643 -~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 677 (830)
++++...++++++++|+|...+.-+..++.+.|+-
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999998887764
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0013 Score=55.96 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 625 PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999988775
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.24 E-value=0.0015 Score=53.05 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 567888888999999999999999999999999999999999999999999999999887764
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.18 E-value=0.0023 Score=72.40 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCC----------HHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGL----------VDEGWRFFNMMRYECNIEPK-LEHYACMVDL 604 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~ 604 (830)
....++|++.++++.. +.|+..| |+.--.++.+.|. ++++++.++.+.. ..|. ...|.--..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3446889999999998 6888876 4444455555666 9999999999984 3454 5567777778
Q ss_pred HHhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh-----
Q 047408 605 LSRTG--NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHH-EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA----- 674 (830)
Q Consensus 605 l~r~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----- 674 (830)
+.+.| ++++|+++++++ ...| +..+|+.-.......| ..+++...++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 779999999998 4445 6899999988888888 899999999999999999999999999998874
Q ss_pred ---------cCHHHHHHHHHHHHh
Q 047408 675 ---------EKWEEVKKLREKISR 689 (830)
Q Consensus 675 ---------g~~~~A~~~~~~m~~ 689 (830)
++++++.+..+..-.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 678888888766543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.12 E-value=0.00019 Score=65.29 Aligned_cols=101 Identities=13% Similarity=0.009 Sum_probs=59.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 613 (830)
.+.+++++|++.+++..+ ..|+.. .+..+..++...|.++.|.... +.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHH
Confidence 344556666666666666 344433 4444555555554433111110 01346
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcch
Q 047408 614 AYRFIEMM-PVAPD-ATIWGSLLCGCRIH-----------HEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 614 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
|+..|++. .+.|+ ..+|..|..+|... |++++|+..++++++++|++..+
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 66665554 44453 45666666666655 58999999999999999998533
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.00026 Score=76.96 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---chHHHHHHH
Q 047408 609 GNLSEAYRFIEMM---------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDNT---GYYVLLANV 670 (830)
Q Consensus 609 g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~l~~~ 670 (830)
|++++|++++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ ..|..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555442 233432 5677788888888888888888887764 345554 457888999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999998877654
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.87 E-value=0.0074 Score=54.02 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----
Q 047408 602 VDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE---- 673 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 673 (830)
..+|...+..++|.+.+++.-..-++..+..|...|.. .+|.++|...++++.+. .++..+..|+.+|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCC
Confidence 33333333444444444443212344444444444444 55666666666666554 445566666777766
Q ss_pred hcCHHHHHHHHHHHHhCC
Q 047408 674 AEKWEEVKKLREKISRRG 691 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~~g 691 (830)
.+++++|.+.+++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 667777777666666554
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0037 Score=51.87 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 602 VDLLSRTGNLSEAYRFIEMM-PVAP-DAT-IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+..+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455556666666655554 2233 234 555555555556666666666666666666555443
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.82 E-value=0.0026 Score=54.66 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=55.5
Q ss_pred HHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 578 GWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 578 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
+.+.|+... ...| +...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544 2334 3456666777777777777777777665 3334 46678888888888889999999988888
Q ss_pred ccCCCC
Q 047408 655 ELEPDN 660 (830)
Q Consensus 655 ~l~p~~ 660 (830)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887753
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.82 E-value=0.012 Score=61.19 Aligned_cols=141 Identities=15% Similarity=0.025 Sum_probs=75.1
Q ss_pred CCChhhHHHHHHHHHh--cCC---hHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC
Q 047408 521 AKDLISWTIMIAGYGM--HGF---GCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK 594 (830)
Q Consensus 521 ~~d~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 594 (830)
..+...|...+.|... .+. ..+|+.+|++.++ ..|+... +..+..++.. . ...+ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~----~~~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R----HSQH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H----HHHS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H----hccC--CC
Confidence 4477788887766542 233 5889999999998 6888653 4333333320 0 0001 11
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMMPV-APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
.... ...+.+|.+-...++. ..++.+|.++.-.+...|++++|...++++++++|+ ...|..++.++.-
T Consensus 253 ~~~~---------~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEKQ---------LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp CHHH---------HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred chhh---------HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 1000 0011223332233322 224555655555555556666666666666666653 4455666666666
Q ss_pred hcCHHHHHHHHHHHHh
Q 047408 674 AEKWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~ 689 (830)
.|++++|.+.+++...
T Consensus 323 ~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 323 KGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6666666666655443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.74 E-value=0.0051 Score=66.74 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=51.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCC
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM---------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDN 660 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~ 660 (830)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666777777777777777776664 345654 6788999999999999999999998875 57887
Q ss_pred cchH
Q 047408 661 TGYY 664 (830)
Q Consensus 661 ~~~~ 664 (830)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7543
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.73 E-value=0.0044 Score=55.54 Aligned_cols=113 Identities=12% Similarity=-0.064 Sum_probs=89.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR----TGNLS 612 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~ 612 (830)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 456889999999999877 44443 556677778889999999987643 356777888888887 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCC
Q 047408 613 EAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 613 eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p 658 (830)
+|.+.+++.--.-++..+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987434567778888888887 8899999999999988753
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.70 E-value=0.0077 Score=54.04 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCcee
Q 047408 625 PDATIWGSLLCGCRIHH---EVKLAEKVAEHVFELE-P-DNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCS 699 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~s 699 (830)
++..+.-.+..++.+.+ ++++|..+++.+++.+ | ++...+..|+-.|++.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 57777777777777777 6668888888888887 6 4567778888888999999999988887764
Q ss_pred EEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCcc
Q 047408 700 WIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740 (830)
Q Consensus 700 wi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~ 740 (830)
.+|+..+.....+.+.+++++.|++
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 3566677777777777888887764
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.009 Score=64.91 Aligned_cols=71 Identities=15% Similarity=-0.022 Sum_probs=49.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCC
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM---------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDN 660 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~ 660 (830)
.+++.|..+|...|++++|++++++. +..|+. .+++.|...|...|++++|+.+++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666666666666666666554 345553 6788888889999999999999988875 57888
Q ss_pred cchHHH
Q 047408 661 TGYYVL 666 (830)
Q Consensus 661 ~~~~~~ 666 (830)
+.+-..
T Consensus 410 p~~~~~ 415 (429)
T 3qwp_A 410 SLIEDL 415 (429)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 755443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.47 E-value=0.014 Score=60.85 Aligned_cols=40 Identities=10% Similarity=-0.160 Sum_probs=34.9
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..++++|.++.+|..++.++...|++++|...++++...+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3457789999999999999999999999999999988754
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.36 E-value=0.0084 Score=50.06 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
+...|..+...|...|++++|++.|++.++ ..|+.. .+..+..++...|++++|.+.|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555666666666666666666666665 234332 45555555666666666666665544
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.36 E-value=0.01 Score=49.01 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=53.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cc-hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECNIEPK-LE-HYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA-TIWGSLLCGCRIH 640 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 640 (830)
....+...|++++|.+.|+...+. .|+ .. .+..+..+|.+.|++++|.+.+++. ...|+. .+|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 345566777888888887777632 343 45 6777777777788888887777765 333432 22211
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 047408 641 HEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~ 661 (830)
+.++++...++++...+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 455666666666666666654
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.00 E-value=0.018 Score=57.52 Aligned_cols=87 Identities=11% Similarity=0.115 Sum_probs=70.7
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHhhh-cCHHH
Q 047408 611 LSEAYRFIEMM-PVAPD---ATIWGSLLCGCRI-----HHEVKLAEKVAEHVFELEPDN-TGYYVLLANVYAEA-EKWEE 679 (830)
Q Consensus 611 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~ 679 (830)
+.+|...+++. .+.|+ ...|.+|...|.. -|+.++|+..++++++++|+. ..+++.+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45555555554 55676 5688888888877 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCcCCCc
Q 047408 680 VKKLREKISRRGLKKNPG 697 (830)
Q Consensus 680 A~~~~~~m~~~g~~~~~~ 697 (830)
|.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998866654454
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.93 E-value=0.15 Score=60.53 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=93.9
Q ss_pred HHHHhcCChHHHHH-HHhcCC-CCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 411 DMYAKCGSMADAES-VFNQMP-VKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 411 ~~y~k~g~~~~A~~-~f~~m~-~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
......+++++|.+ ++..++ .. .+..++..+...|..+.|.++..
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~---------------------------~~~~~~~~l~~~~~~~~a~~~~~------ 653 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKD---------------------------SLTKIARFLEGQEYYEEALNISP------ 653 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHH---------------------------HHHHHHHHHHHTTCHHHHHHHCC------
T ss_pred hHHHHhCCHHHHHHHHHhcCCchH---------------------------HHHHHHHHHHhCCChHHheecCC------
Confidence 34456788999988 665543 11 11233344445555666555432
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
+. ..-.+.+..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...
T Consensus 654 ---~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l 716 (814)
T 3mkq_A 654 ---DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLL 716 (814)
T ss_dssp ---CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHH
T ss_pred ---Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHH
Confidence 11 112456778999999999988764 567999999999999999999999998754 3334444
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+...|+.+...++-+..... ..++.-..+|.+.|++++|++++.++
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~-------~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETT-------GKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHc-------CchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44456555544443333211 12333444555666666666665554
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.92 E-value=0.09 Score=62.38 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=91.2
Q ss_pred HHhcCCHHHHHH-HhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 047408 503 YVKCGVLVLARS-LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRF 581 (830)
Q Consensus 503 y~k~g~~~~A~~-~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 581 (830)
....|++++|.+ ++..++.+ .....++..+...|..++|+++.+.-. . - .......|++++|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~-------~-~----f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD-------Q-K----FELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH-------H-H----HHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc-------h-h----eehhhhcCCHHHHHHH
Confidence 345678888887 66554411 122667777788888888887653211 1 1 2233467888888887
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 582 FNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPV----------APDATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 582 ~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
.+.+ .+...|..+.+++.+.|+++.|++.|.++.. .-+..-+..+.......|+++.|..++.
T Consensus 675 ~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 675 LTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 5443 3456788888888888888888888888741 1122222233333444444444444433
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+. +-+....++|.+.|+|++|..+.+
T Consensus 748 ~~--------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 748 IA--------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HH--------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hc--------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 31 223445566777777777777644
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.48 E-value=0.83 Score=39.37 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=87.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
-.|..++..++..+..... +..-++-++--...+-+-+--.+.++.+-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 3466666666666665421 2222333332222333333334444444332222 3466666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 616 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.-+-.+. .+....+--|......|.-|.-..+...++.-+|-++...+-+++.|.+.|...+|.+++++.=++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 6665553 233344555677788999999999999877777777899999999999999999999999999999885
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.20 E-value=0.068 Score=44.80 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-----P----VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
-+-.|+..+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445666666777777776666654 1 123467889999999999999999999999999999997765544
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.05 E-value=0.093 Score=42.94 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=57.0
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 593 PKLEHYACMVDLLSRTGN---LSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 593 p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
++...+..+..++...+. .++|.+++++. ...|+ +..+.-+...+...|++++|...++++++.+|+ ......+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 356777788888765554 68999998886 55664 567777778899999999999999999999999 4444444
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.00 E-value=0.014 Score=62.02 Aligned_cols=391 Identities=12% Similarity=0.125 Sum_probs=214.5
Q ss_pred CCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHH
Q 047408 61 CKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVF 140 (830)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~ 140 (830)
..+..|..+-.+....+...+|++-|-+. -+|+.|..++.++.+.|.+++-...+....+.. .+ +.+-+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke-~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE-SYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CS-TTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cc-cccHHHHHH
Confidence 35678999999999999999988777443 357789999999999999999888887776652 33 678899999
Q ss_pred HHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHH
Q 047408 141 MFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDA 220 (830)
Q Consensus 141 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A 220 (830)
+|+|.+++.+-.+.. ..||+.--..+-.-|...|.++.|.-+|..+. -|..|-..+...|+ ...|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~---yq~A 189 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE---YQAA 189 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSG---GGSS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHH---HHHH
Confidence 999999977654433 24666666777777888888887776665432 12222222333332 2211
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-
Q 047408 221 HKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFS- 299 (830)
Q Consensus 221 ~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~- 299 (830)
.+.-. ...++.+|-.+-.+|...+.+.-|.-.--.+.- .||. ...++.-|-..|.+++-..+++..+ |++
T Consensus 190 VdaAr--KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl--glEr 260 (624)
T 3lvg_A 190 VDGAR--KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL--GLER 260 (624)
T ss_dssp TTTTT--TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT--TSTT
T ss_pred HHHHH--hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh--CCCc
Confidence 11100 124566666666666666666555443333321 1111 1223333445555554444444333 222
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCC----C-------CeehHHHHHHHHHhcCChhHHHHH-------------
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGE----R-------SVVSWTSMIAGYAREGVFDGAIRL------------- 355 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~-------d~~~~~~li~~~~~~g~~~~A~~l------------- 355 (830)
....+++.|.-.|+|- +.++-.+-++..-. | ....|.-++-.|.+..+++.|...
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 3445556666666655 23333333322211 1 334566666666666666655432
Q ss_pred HHHHHHcCCCCCcchH---------------HHHHHHhhc-------------cCcchhhhhHHHHHHhhcCCCchhhHH
Q 047408 356 FRGMVREGIEPDVYAI---------------TSILHACAC-------------DGLLEIGKDVHDYIKENDMQSSLYVSN 407 (830)
Q Consensus 356 ~~~m~~~g~~pd~~t~---------------~~ll~a~~~-------------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 407 (830)
|.+...+ .+|...| +-||.++.. .+++...+..+..+.. ..+..+-.
T Consensus 340 Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNe 414 (624)
T 3lvg_A 340 FKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNE 414 (624)
T ss_dssp GTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHH
T ss_pred HHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHH
Confidence 1111110 1222222 223333322 2233333322222221 22445666
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH----------HHHHHHHHHh---CC--CCCccccccchhhhcchh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------ALDLFVAMLQ---NF--EPDGVTMACILPACASLA 472 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~----------al~~f~~m~~---~~--~pd~~t~~~ll~a~~~~~ 472 (830)
+|-+.|....+++.-+.-.+.-..-|.+.....+. |.-+|++-.+ .- --....|.-.+...+..+
T Consensus 415 Aln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~ 494 (624)
T 3lvg_A 415 SLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESK 494 (624)
T ss_dssp HHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCC
T ss_pred HHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcC
Confidence 77788888887776666555555445444433333 2222222111 00 122334666677777788
Q ss_pred hHHHHHHHHHHHHHhC
Q 047408 473 ALERGREIHGYILRHG 488 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g 488 (830)
+.+.+.+++.+.++.|
T Consensus 495 ~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 495 DTELAEELLQWFLQEE 510 (624)
T ss_dssp CTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 8888888888888766
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.62 Score=42.75 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=86.5
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHH
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGW 579 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 579 (830)
.+....+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788899988887766 4677899999999999999999988888654 445555556667766555
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 580 RFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++-+....+ .-++.-...+.-.|+++++.+++.+...-|.+.. ..+.+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 444333221 1244444556667888888888887754333322 124577777777776655
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.39 E-value=0.17 Score=43.53 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhccC-C-CCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCcee
Q 047408 625 PDATIWGSLLCGCRIHHEVKL---AEKVAEHVFELE-P-DNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCS 699 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~s 699 (830)
|+..+--.+.+++.+.++... |+.+++.++..+ | ..-.....|+-.|.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~---------- 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------
Confidence 444444445555555554333 666666666655 4 2334556666667777777777776666553
Q ss_pred EEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 047408 700 WIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREG 738 (830)
Q Consensus 700 wi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g 738 (830)
.+|.+.+.......+.++|.+.|
T Consensus 103 ----------------~eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 103 ----------------TEPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHC-
T ss_pred ----------------hCCCCHHHHHHHHHHHHHHHhcc
Confidence 34555566665556666666665
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.14 E-value=0.76 Score=40.25 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCC-cchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCcee
Q 047408 624 APDATIWGSLLCGCRIHH---EVKLAEKVAEHVFELEPDN-TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCS 699 (830)
Q Consensus 624 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~s 699 (830)
.|+..+--.+.+++.+.. +..+|+.+++.++..+|+. -.....|+-.|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 455554444555555544 4567888888888877753 34556778888888888888888777764
Q ss_pred EEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCcc
Q 047408 700 WIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740 (830)
Q Consensus 700 wi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~ 740 (830)
..|.+.+.....+.+.++|.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 3566667777667777788887764
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.14 Score=58.83 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|...|+++.|..++++++...|.+-..+..|+.+|...|+|+.|.-.+..+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6788999999999999999999999999999999999999999999988774
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.82 E-value=0.36 Score=48.19 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHH------HHhcCCHHHHHHHhhhCCCCCh--hhHHHHHH-HHHhc--CC-
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDM------YVKCGVLVLARSLFDMIPAKDL--ISWTIMIA-GYGMH--GF- 539 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~------y~k~g~~~~A~~~f~~m~~~d~--~~~~~li~-~~~~~--g~- 539 (830)
.+...|++++....+.+. .+|-.- -.+.|+..+-.+.+.+....|+ ..|..++. +++.. |.
T Consensus 101 ~~~~RA~~Ly~ra~~y~~-------raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~ 173 (301)
T 3u64_A 101 EAYSRARKLYLRGARYAL-------SSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGS 173 (301)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTS
T ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCCh
Confidence 456677777777666542 122211 1234454555555666654443 46776665 33332 22
Q ss_pred -----hHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHH
Q 047408 540 -----GCDAIATFNDMRQAGIEPD---EVSFISVLYACSHS-----GLVDEGWRFFNMMRYECNIEPK--LEHYACMVDL 604 (830)
Q Consensus 540 -----~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~ 604 (830)
..+|..++++.++ +.|+ ...+..+...|... |+.++|.++|++.. .+.|+ ..++....+.
T Consensus 174 ~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~ 248 (301)
T 3u64_A 174 ALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADA 248 (301)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHH
Confidence 4566666666666 5666 23455555555553 66666666666655 34452 5555555555
Q ss_pred HHhc-CCHHHHHHHHHhC
Q 047408 605 LSRT-GNLSEAYRFIEMM 621 (830)
Q Consensus 605 l~r~-g~~~eA~~~~~~m 621 (830)
|++. |+.++|.+.+++.
T Consensus 249 l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp TTTTTTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 5553 5555555555553
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.23 E-value=0.61 Score=38.78 Aligned_cols=64 Identities=13% Similarity=-0.037 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELE-------PDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~-------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.-.-.|...+...|+++.|...++++++.. +..+.++..|+..|.+.|++++|....++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445678888999999999999999988753 33456789999999999999999999888764
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.15 E-value=0.61 Score=41.71 Aligned_cols=94 Identities=13% Similarity=-0.018 Sum_probs=63.7
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---CHHHHHHHhhhCCCCC-----hhhHHHHHHHHHh
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCG---VLVLARSLFDMIPAKD-----LISWTIMIAGYGM 536 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~~d-----~~~~~~li~~~~~ 536 (830)
+........+..+++-+....+.|. ++..+...+.-++.+.+ +++++..+|+...+.+ ...+-.+..+|.+
T Consensus 5 l~~~l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 5 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp CSCSCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence 3444456677777777777777664 56666667777777777 5557777777654322 3345556667788
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
.|++++|.+.++..++ +.|+..-
T Consensus 84 l~~Y~~A~~y~~~lL~--ieP~n~Q 106 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQ--TEPQNNQ 106 (152)
T ss_dssp TSCHHHHHHHHHHHHH--HCTTCHH
T ss_pred ccCHHHHHHHHHHHHh--cCCCCHH
Confidence 8888888888888887 6776543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.61 E-value=1.3 Score=40.72 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=50.5
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 571 HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 571 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
..|+++.|.++.+.+. +...|..|.+...+.|+++-|++.|++... +..|+-.|...|+.+.-..+.
T Consensus 17 ~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHHHHHHH
Confidence 4566666666554431 344566666666666666666666666531 333444445555555544444
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+.+..- +-+..--..+.-.|+.+++.+++.
T Consensus 84 ~iA~~~-----g~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 84 NIAQTR-----EDFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHT-----TCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHC-----ccHHHHHHHHHHcCCHHHHHHHHH
Confidence 433221 113333344555677777766653
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.20 E-value=1.2 Score=38.50 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCC-cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 625 PDATIWGSLLCGCRIHH---EVKLAEKVAEHVFELEPDN-TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+..+--.+.+++.+.. +..+|+.+++.+++.+|.. -..+..|+-.+.+.|++++|.+..+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34433333344443333 4456666677776666632 3445666667777777777777766555
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.49 E-value=3.1 Score=35.74 Aligned_cols=74 Identities=19% Similarity=0.079 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 593 PKLEHYACMVDLLSRTGNLSE---AYRFIEMM-PVA-P-DA-TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 593 p~~~~y~~lv~~l~r~g~~~e---A~~~~~~m-~~~-p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
|+..+--.+..+|.++.+..+ ++.++++. ... | +. ...-.|.-++.+.|+++.|++.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344444444445555554444 45555543 112 3 11 22334555788999999999999999999999865444
Q ss_pred H
Q 047408 666 L 666 (830)
Q Consensus 666 ~ 666 (830)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.26 E-value=0.061 Score=57.23 Aligned_cols=234 Identities=12% Similarity=0.118 Sum_probs=137.6
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 047408 132 GVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVV 211 (830)
Q Consensus 132 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 211 (830)
+.+|+.|..++.+.|.+.+|.+-|= ...|+..|..+|.+..+.|.+++-+..+.-.++. .-++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhh
Confidence 5677777777777777777765543 3345556777777777778777766666544433 22333334555555555
Q ss_pred CCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 047408 212 GNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHA 291 (830)
Q Consensus 212 g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~ 291 (830)
+++.++++ -+..||+.--..+-+-|...|.++.|.-+|..+
T Consensus 130 ~rL~elEe------fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~i--------------------------------- 170 (624)
T 3lvg_A 130 NRLAELEE------FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------------------------- 170 (624)
T ss_dssp CSSSTTTS------TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------------------------------
T ss_pred CcHHHHHH------HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------------------------------
Confidence 53222211 011234433344444444444444443333221
Q ss_pred HHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchH
Q 047408 292 FALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI 371 (830)
Q Consensus 292 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 371 (830)
.-|..|...+.+.|++..|.+.-++ ..++.+|-.+-.+|...+++.-|.-.--.+. +.|| -.
T Consensus 171 -----------sN~akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL 232 (624)
T 3lvg_A 171 -----------SNFGRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL 232 (624)
T ss_dssp -----------CCCTTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CC
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HH
Confidence 1123444556666776666533222 2578899999999999999988765544443 2333 23
Q ss_pred HHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 372 TSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 372 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
..++..|-..|.+++-..+++.-+... ......++-|.-.|+|- ++++-++-++.
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 456677889999999888887766321 34567889999999987 45555555443
No 237
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.17 E-value=49 Score=37.28 Aligned_cols=239 Identities=11% Similarity=0.061 Sum_probs=113.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHh---
Q 047408 339 MIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAK--- 415 (830)
Q Consensus 339 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k--- 415 (830)
....+.-.|+++.|++++-.. ...|.+.+...|..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 345566678999999887644 34566666666665443332 22222110 01 11 2336678888875
Q ss_pred cCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhC--------C--CCCccccccchhhhcchhhHHHHHHHHHHHH
Q 047408 416 CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQN--------F--EPDGVTMACILPACASLAALERGREIHGYIL 485 (830)
Q Consensus 416 ~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~--------~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 485 (830)
..++.+|.+.|--+..++...-..+ ..+...++.-+ | .+|..--..++.-...+=+++.-.+....
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~--~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~-- 444 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVEL--CHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHT-- 444 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHH--HHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHH--
T ss_pred cCCHHHHHHHHHHHhccCCchHHHH--HHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHH--
Confidence 4788899988777744431100011 11222222111 2 44544444444333221111100111111
Q ss_pred HhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CC--
Q 047408 486 RHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGI------EP-- 557 (830)
Q Consensus 486 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~P-- 557 (830)
+...........|++++|..+|+- .|+++.|++++.+.+.+-+ +|
T Consensus 445 ---------i~~~aA~~ae~~G~~~dAi~LY~L------------------a~~~d~vl~lln~~Ls~~l~~~~~~~~~~ 497 (661)
T 2qx5_A 445 ---------ITEQAARRADEDGRIYDSILLYQL------------------AEEYDIVITLVNSLLSDTLSASDLDQPLV 497 (661)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHHHSCTTSCSS
T ss_pred ---------HHHHHHHHHHHCCCHHHHHHHHHH------------------hcCHHHHHHHHHHHHHHHhcccccccccc
Confidence 111123345677888888887765 3677777777777654211 00
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHhHhh----cCCCC-CcchHHHHHHH-----HHhcCCHHHHHHHHHhCCCCCC
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFNMMRYE----CNIEP-KLEHYACMVDL-----LSRTGNLSEAYRFIEMMPVAPD 626 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~~p-~~~~y~~lv~~-----l~r~g~~~eA~~~~~~m~~~p~ 626 (830)
+... -...+.+..|.++.+..... ..+.+ +.+++..|.++ +.+.|++++|++.++++++-|.
T Consensus 498 ~~~~-------~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 498 GPDD-------NSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp CSSC-------CTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred cccc-------cccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 0000 00012233344443332211 01222 23455555443 3689999999999999976664
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.35 E-value=18 Score=31.37 Aligned_cols=111 Identities=10% Similarity=-0.044 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH----------------------hcCCHHHHHHHhhhCCCCChhhHH
Q 047408 471 LAALERGREIHGYILRHGISADRNVANAIVDMYV----------------------KCGVLVLARSLFDMIPAKDLISWT 528 (830)
Q Consensus 471 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~----------------------k~g~~~~A~~~f~~m~~~d~~~~~ 528 (830)
.|.+++|.++.....+.. +..-+|..|--.. +||++......+-.+. .+..-.+
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-~~se~vd 95 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNEHVN 95 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-chHHHHH
Confidence 477888888888877643 3333333332222 3344443333333322 1223334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..+..+...|+-++-.+++..+.. +-+|+......+.+||.+.|+..++.+++.+..
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 445555566666666666655433 245555555666666666666666666665554
No 239
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.85 E-value=11 Score=30.48 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||++.|-++-.+ +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 46777778777777664 333433345667889999999999999999999999888654 56888888888878877
Q ss_pred cCCCCChhHHHH
Q 047408 553 AGIEPDEVSFIS 564 (830)
Q Consensus 553 ~g~~Pd~~t~~~ 564 (830)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 555555543
No 240
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.30 E-value=8 Score=31.19 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46777778777777664 33343334566788999999999999999999999988865 467888888888878877
Q ss_pred cCCCCChhHHHH
Q 047408 553 AGIEPDEVSFIS 564 (830)
Q Consensus 553 ~g~~Pd~~t~~~ 564 (830)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 555555543
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.30 E-value=16 Score=39.26 Aligned_cols=179 Identities=13% Similarity=0.098 Sum_probs=113.7
Q ss_pred CCHHHHHHHhhhCC-----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChhH--HHHHHHHHHccCC
Q 047408 507 GVLVLARSLFDMIP-----AKD----LISWTIMIAGYGMHGFGCDAIATFNDMRQ-AGIEPDEVS--FISVLYACSHSGL 574 (830)
Q Consensus 507 g~~~~A~~~f~~m~-----~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~Pd~~t--~~~ll~a~~~~g~ 574 (830)
|+++.|.+.+-.+. ..| ......++..|...|+++...+.+.-+.. .|..+..++ ...++.-......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 67888887765443 223 23467788899999999999888876654 344343333 1112222222232
Q ss_pred HHH--HHHHHHHhHhhcCCCCC---c-----chHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCC---HHHHHHHHHH
Q 047408 575 VDE--GWRFFNMMRYECNIEPK---L-----EHYACMVDLLSRTGNLSEAYRFIEMMPV-----APD---ATIWGSLLCG 636 (830)
Q Consensus 575 ~~~--a~~~~~~m~~~~~~~p~---~-----~~y~~lv~~l~r~g~~~eA~~~~~~m~~-----~p~---~~~~~~ll~~ 636 (830)
.+. -....+... .+... . ....-|.++|...|++.+|.+++.+.+. .+. ...+.--+..
T Consensus 110 ~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 110 LDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp THHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 112222111 22221 1 1235688999999999999999998731 111 2466667788
Q ss_pred HHhcCCHHHHHHHHHHHhc---cCCCC----cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 637 CRIHHEVKLAEKVAEHVFE---LEPDN----TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~---l~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|...+|+..|..+++++.. -.|.+ ..+|.+++.++...++|.+|.+.+.+.-
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999988632 12222 2467899999999999999988776654
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.21 E-value=2.5 Score=37.37 Aligned_cols=53 Identities=15% Similarity=-0.003 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
+|.++|+.+|+.++.+...-+..+...+.--.++|+.+.|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 68888888888887775555667777888888899999999998888775544
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.48 E-value=2.6 Score=44.69 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh-----CCCcCCCc
Q 047408 630 WGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR-----RGLKKNPG 697 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~g~~~~~~ 697 (830)
...++.++...|+.+++...++.++..+|-+-..|..|...|.+.|+..+|.+.++..+. -|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344556667778888888888888888888877888888888888888888877766543 47766553
No 244
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.24 E-value=54 Score=33.33 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=48.8
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhcCCCh-----HHHHHHHHHHHHhC--CCCCchHHHHHHHHhhcCCChHHHHHHHhhc
Q 047408 256 KEMLNLGFNVDLATMVTVLSGCANCGAL-----MFGRAVHAFALKAC--FSKEISFNNTLLDMYSKCGDLDGAIRVFEKM 328 (830)
Q Consensus 256 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~-----~~~~~l~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 328 (830)
+...+.++++|..+..-++..+.....- ........+-.+.| ..-|+.....+...|.+.+++.+|+.-|=-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il- 161 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL- 161 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-
Confidence 3334445666665555555554443321 11223333444444 234667777778888888888888887742
Q ss_pred CCCC-eehHHHHHHHHHhcCC
Q 047408 329 GERS-VVSWTSMIAGYAREGV 348 (830)
Q Consensus 329 ~~~d-~~~~~~li~~~~~~g~ 348 (830)
...+ +..+..|+.-+.+.+.
T Consensus 162 g~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 162 GTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp SCTTHHHHHHHHHHHHHHTSC
T ss_pred cCCchHHHHHHHHHHHHHhcC
Confidence 2222 2455445444444433
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.01 E-value=82 Score=35.27 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=81.0
Q ss_pred HHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHH
Q 047408 73 FCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEG 151 (830)
Q Consensus 73 ~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A 151 (830)
..+.|++..+..+...+....+.|. .|..+.... ...... ++-..+.+..-.|-...+-+..+..+.+.++....
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 4556888888777766644333332 444443332 122333 44444544321121123445566677788899888
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 047408 152 RRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGN 213 (830)
Q Consensus 152 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 213 (830)
...+.. +..+...--....+....|+..+|....+.+-..| ...+.....++..+...|.
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 887776 44455445556677888899888888777776665 3455667777887776664
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.78 E-value=15 Score=32.47 Aligned_cols=98 Identities=12% Similarity=0.229 Sum_probs=69.1
Q ss_pred CCCeehHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCcch----HHHHHH---HhhccCcchhhhhHHHHHHh
Q 047408 330 ERSVVSWTSMIAGYAREGVF------DGAIRLFRGMVREGIEPDVYA----ITSILH---ACACDGLLEIGKDVHDYIKE 396 (830)
Q Consensus 330 ~~d~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~t----~~~ll~---a~~~~~~~~~a~~~~~~~~~ 396 (830)
..|..+|-..+.-.-+.|++ ++..++|++.... ++|+... |.-+.- .+...++.+.|+++|..+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35677888888888888888 7788888877654 6665421 211111 11234789999999999877
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 047408 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 397 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 429 (830)
.+ ..-..+|......-.+.|+++.|++++...
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 63 333778888888888999999999998764
No 247
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.18 E-value=44 Score=31.10 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=75.0
Q ss_pred HHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAPDA---TIWGSLLCGCRIHHEVKLAEKVAEHVFE--LEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+.+...|... ..+-|+ -+|-..+..| ..++......+++.+.. +.-..+..|...+..+...|+|++|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444444 234454 4666666555 24557788888888864 556678889999999999999999999999
Q ss_pred HHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCccCCCC
Q 047408 686 KISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTR 744 (830)
Q Consensus 686 ~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~~~~~ 744 (830)
.-.+++.+| .+.+.........+|.+.+.+-+..
T Consensus 140 ~GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 140 LGAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp HHHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 877766654 2456666778888888888754444
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.94 E-value=64 Score=32.82 Aligned_cols=168 Identities=14% Similarity=0.072 Sum_probs=105.1
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCChhHHHHHHHHHH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATF----NDMRQAGIEPDEVSFISVLYACS 570 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~Pd~~t~~~ll~a~~ 570 (830)
.+.++..-|.+.+++++|.+++.. -...+.++|+...|-++- +-..+.++++|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455677779999999999998643 234567778877666655 55556789999888777777666
Q ss_pred ccCCHHHH-HHHHHHhH---hhcCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047408 571 HSGLVDEG-WRFFNMMR---YECNIEP--KLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 571 ~~g~~~~a-~~~~~~m~---~~~~~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 644 (830)
....-+-. ..+.+.+. .++|-.| +++....+...|.+.|++.+|+.-|= ....+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 55431111 12222221 1234333 46667788899999999999998873 3334444666666665544432
Q ss_pred HHHHHHHHHhccCCCCcchHHH-HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 645 LAEKVAEHVFELEPDNTGYYVL-LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~-l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|.....|.. .+-.|...|+...|..++....+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222333322 23346677888888887665543
No 249
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.03 E-value=57 Score=31.68 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCchh--HHhHHHHHHHhcCCHHHHHHHhh
Q 047408 477 GREIHGYILRHGISADRN--VANAIVDMYVKCGVLVLARSLFD 517 (830)
Q Consensus 477 a~~i~~~~~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~ 517 (830)
..++...+.+.|..++.. .....+...++.|..+-+..+++
T Consensus 198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 355666677777655432 12233444555666666666665
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.74 E-value=17 Score=29.53 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
+.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+..+.+.| +....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666667777778899999999999999999999999999999876543 44566877764
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.32 E-value=62 Score=33.89 Aligned_cols=158 Identities=11% Similarity=0.001 Sum_probs=88.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCC--------CChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCChhHHH---
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPA--------KDLISWTIMIAGYGMH-GFGCDAIATFNDMRQAGIEPDEVSFI--- 563 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~--------~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~Pd~~t~~--- 563 (830)
...|...|.+.|+.++..+++..... +..-.-..+|..+... +..+.-+++..+..+-. +-+..+|.
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34567778888888877777766541 1223445566666553 33344445544444310 11223442
Q ss_pred ---HHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHH
Q 047408 564 ---SVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMM-----PVAPDATIWG 631 (830)
Q Consensus 564 ---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~~~p~~~~~~ 631 (830)
.+..-+...|++.+|.+++..+.++..-..+ .+.|..-+.+|...|++.++...+.+. .+.|++.+-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 4566677778888887777777654332111 355666677777788877777777654 1223333222
Q ss_pred HH----HHHHH-hcCCHHHHHHHHHHHh
Q 047408 632 SL----LCGCR-IHHEVKLAEKVAEHVF 654 (830)
Q Consensus 632 ~l----l~~~~-~~g~~~~a~~~~~~~~ 654 (830)
.+ +-.+. ..+++..|-..|-+++
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 11234 5677777777665554
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.16 E-value=16 Score=32.88 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=15.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC
Q 047408 601 MVDLLSRTGNLSEAYRFIEMMPVA 624 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m~~~ 624 (830)
+..+|.+.|+.++|+..++..|.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHCCHHHHHHHHhcCCch
Confidence 555666667777777777666543
No 253
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=72.76 E-value=99 Score=32.54 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=21.5
Q ss_pred HHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 605 LSRTGNLSEAYRFIEMMPVAP---DATIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
..+.|+.+-+.-+++.- ..+ |..-+..|-.| ...|+.+....+++.
T Consensus 318 A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A-~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 318 ASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQA-AQQGHTDIVTLLLKN 366 (437)
T ss_dssp HHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHH-HHCChHHHHHHHHHC
Confidence 34566666555555432 122 22223333333 345676666555554
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=70.76 E-value=18 Score=38.02 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=38.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhH----hhcCCCCCcch
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMR----YECNIEPKLEH 597 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 597 (830)
++..+...|++++|+..++.+... -.-++..+..++.++.+.|+..+|++.|+... .+.|+.|..++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445555666666666666666552 12244456666666666666666666665543 24566665543
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.90 E-value=28 Score=31.28 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHh
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL-------EHYACMVDLLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~y~~lv~~l~r~g~~~eA~~~~~~ 620 (830)
+..-+..+...|+++.|+-+.+.+..-.+..|+. .++..+.|++...|++..|...|++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3334444555555555555444433222222321 2445556666666666666666655
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.51 E-value=18 Score=29.43 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 613 EAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 613 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
.++.-+-.+.+-|++.+..+-|.||++.+|+..|.++++-+...-.+...+|--
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~ 84 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY 84 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHH
Confidence 333333445678999999999999999999999999999776443333444543
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.45 E-value=63 Score=31.33 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=14.3
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcC
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMG 329 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~ 329 (830)
++.+...++.|+++....+++.-.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCC
Confidence 445555566666666666665543
No 258
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=68.18 E-value=39 Score=33.97 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=43.3
Q ss_pred HhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 619 EMMPVAPDA--TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 619 ~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
...+++|.. .++.+-++.+.+++|+..|-..+++++++.|... ..++|.++...-...
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 333667653 5677888889999999999999999999999632 345677776665543
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.43 E-value=1.3e+02 Score=31.94 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=103.9
Q ss_pred HHHHHHHHHhCC------CCCccccccchhhhcchhhHHHHHHHHHHHHH-hCCCCch--hHHhHHHHHHHhcCCHH--H
Q 047408 443 ALDLFVAMLQNF------EPDGVTMACILPACASLAALERGREIHGYILR-HGISADR--NVANAIVDMYVKCGVLV--L 511 (830)
Q Consensus 443 al~~f~~m~~~~------~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~--~~~~~Li~~y~k~g~~~--~ 511 (830)
|++.+..+.+.. .........++..|...++++...+....+.+ +|..... ...+.+++........+ .
T Consensus 35 a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~ 114 (445)
T 4b4t_P 35 ALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNT 114 (445)
T ss_dssp HHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 666555554321 23344466677788888888877666655544 3322221 11122333333333222 2
Q ss_pred HHHHhhhCC---CCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-----HHHHHHHHHHccCCHH
Q 047408 512 ARSLFDMIP---AKDL-------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-----SFISVLYACSHSGLVD 576 (830)
Q Consensus 512 A~~~f~~m~---~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-----t~~~ll~a~~~~g~~~ 576 (830)
-..+.+... ..-. .....+...|...|++.+|.+++.++..+-...+.. .+...+..|...+++.
T Consensus 115 ~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~ 194 (445)
T 4b4t_P 115 RISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYS 194 (445)
T ss_dssp HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHH
Confidence 233333332 1111 123456778888999999999999987532222222 3555567788899999
Q ss_pred HHHHHHHHhHhhc-CCCC--C--cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 577 EGWRFFNMMRYEC-NIEP--K--LEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 577 ~a~~~~~~m~~~~-~~~p--~--~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+|..+...+.... ...+ + ...|.+++..+...+++.+|.+.|.+.
T Consensus 195 ~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 195 QATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999888764321 1222 1 356788888888899999988876554
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.08 E-value=71 Score=33.44 Aligned_cols=160 Identities=7% Similarity=-0.111 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChh---HHHHHHHHHHcc-CCHHHHHHHHHHhHhhcCCCCCcchH--
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQA-GIEPDEV---SFISVLYACSHS-GLVDEGWRFFNMMRYECNIEPKLEHY-- 598 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~---t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~y-- 598 (830)
+...+...|.+.|+.++..+++...+.- +.-|-.. ....++..++.. +..+.-.++.....+...- .-..|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ--EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4556788999999999999999887541 1122222 256777777664 3334334443333211000 11122
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhC----C-CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhccC---CCCc--
Q 047408 599 ----ACMVDLLSRTGNLSEAYRFIEMM----P-VAPDA---TIWGSLLCGCRIHHEVKLAEKVAEHVFELE---PDNT-- 661 (830)
Q Consensus 599 ----~~lv~~l~r~g~~~eA~~~~~~m----~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~---p~~~-- 661 (830)
.-+++.|...|++.+|.+++.++ . ..... .++..-+..|...||+..+..++.++.... |.+|
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 36889999999999999999887 2 11111 344455566888999999999998775421 1222
Q ss_pred --chHHHHHHHHh-hhcCHHHHHHHHHHH
Q 047408 662 --GYYVLLANVYA-EAEKWEEVKKLREKI 687 (830)
Q Consensus 662 --~~~~~l~~~y~-~~g~~~~A~~~~~~m 687 (830)
.....-|-++. ..++|.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22344566677 799999998876544
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=66.78 E-value=29 Score=39.89 Aligned_cols=124 Identities=16% Similarity=0.098 Sum_probs=77.1
Q ss_pred HHHHHHhhcCCC-hHHHHHHHhhcCCCCee--h--HHHHHHHHHhcC-ChhHHHHHHHHHHHc------CCCCCcch---
Q 047408 306 NTLLDMYSKCGD-LDGAIRVFEKMGERSVV--S--WTSMIAGYAREG-VFDGAIRLFRGMVRE------GIEPDVYA--- 370 (830)
Q Consensus 306 ~~Li~~y~k~g~-~~~A~~~f~~m~~~d~~--~--~~~li~~~~~~g-~~~~A~~l~~~m~~~------g~~pd~~t--- 370 (830)
.+|+......|+ .+.|..+|+++...+.. . ..++|..+.+.+ +--+|+++..+..+. ...+....
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444444555 47788888887654332 1 222333332322 223455555554421 12222210
Q ss_pred ---H-HHHH----HHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 047408 371 ---I-TSIL----HACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP 430 (830)
Q Consensus 371 ---~-~~ll----~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 430 (830)
+ ..|| .-|...|+++.|.++-...+... +.+-.+|-.|...|.+.|+++.|+-.++.+|
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 1122 24567899999999999988775 5667899999999999999999999999997
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.24 E-value=11 Score=36.84 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 605 LSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
+.+.|.+++|++.+..- .-.| |...=..|..-++..|+++.|..-++-+.+++|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34555555555443332 2233 3333334444455555555555555555555554
No 263
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=65.08 E-value=2 Score=27.84 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=9.9
Q ss_pred ccc-cCccccCCCC
Q 047408 817 HHF-KDGRCSCRGF 829 (830)
Q Consensus 817 h~f-~~g~csc~d~ 829 (830)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 4799999976
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.55 E-value=38 Score=29.16 Aligned_cols=62 Identities=15% Similarity=0.259 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+..+.+. .+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33455556666677789999999999999999999999999999987654 444667877764
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.54 E-value=38 Score=34.90 Aligned_cols=66 Identities=6% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCChh
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPAKD---LISWTIMIAGYGMHGF--GCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
..+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35778899999999999999999998664 2345555566655433 456778888888776554443
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.90 E-value=84 Score=27.37 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
|.-|+.+.|+++.|++..+.+++.+|+|..+
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4457889999999999999999999998543
No 267
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=60.63 E-value=4.1 Score=35.34 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCeEEEE----ecccccccccchhhhhhccccceEEEecCCccccccCcccc
Q 047408 778 GQTIRVT----KNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCS 825 (830)
Q Consensus 778 ~~~~~~~----knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 825 (830)
.-.+||+ ++.+||-+| .|+..-..-+++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4567776 578888887 344444556799999999999874
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.53 E-value=45 Score=28.70 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 630 WGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+--|.-|+.+.|+++.|++..+.+++.+|+|..+
T Consensus 81 LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3445557888999999999999999999998543
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.83 E-value=1.5e+02 Score=29.82 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=53.1
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhcCC--C---hHHHHHHHHHHHHhCC--CCCchHHHHHHHHhhcCCChHHHHHHHhh
Q 047408 255 FKEMLNLGFNVDLATMVTVLSGCANCG--A---LMFGRAVHAFALKACF--SKEISFNNTLLDMYSKCGDLDGAIRVFEK 327 (830)
Q Consensus 255 ~~~m~~~g~~pd~~t~~~ll~a~~~~~--~---~~~~~~l~~~~~~~g~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 327 (830)
.+...+.++++|..+..-++..+.... . .+.......+-.+.|- ..|+.....+...|.+.|++.+|+.-|--
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 333444556666655555554443322 1 1222333344444432 24677778888889999999999887753
Q ss_pred cCCCCeehHHHHHHHHHhc---CChhH
Q 047408 328 MGERSVVSWTSMIAGYARE---GVFDG 351 (830)
Q Consensus 328 m~~~d~~~~~~li~~~~~~---g~~~~ 351 (830)
-...|...+-.|+.-+.+. |...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 2212455555555555444 54444
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.05 E-value=63 Score=39.45 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=85.8
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC----C----------------
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK----D---------------- 523 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~----d---------------- 523 (830)
++..|...+..+.++++... .+.++...-.+..+|..+|++++|.+.|.+.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555555555554432 2445555455677899999999999999875311 0
Q ss_pred ------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh-h--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 047408 524 ------LISWTIMIAGYGMHGFGCDAIATFNDMRQAGI-EPDE-V--SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 524 ------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd~-~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 593 (830)
..-|.-++..+.++|.++.++++-+...+..- .++. . .+..+..++...|++++|...+-.+... .-
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HH
Confidence 01245566777788888888877776665321 1111 1 2566777788888888887777666421 12
Q ss_pred CcchHHHHHHHHHhcCCHHH
Q 047408 594 KLEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 594 ~~~~y~~lv~~l~r~g~~~e 613 (830)
......-+|..++..|.+++
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 23455566666666655443
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.51 E-value=70 Score=39.06 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM----PVAP-DA--TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p-~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
-|.-++.++.+.|..+.+.++-+.. +-.+ +. ..|..+..++..-|++++|-.++-..-..+- -....-.|+.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-r~~cLr~LV~ 979 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-HHHHHHHHHH
Confidence 4566667777777777776665443 2111 11 2566677777777777776665543321111 1223344455
Q ss_pred HHhhhcCHHH
Q 047408 670 VYAEAEKWEE 679 (830)
Q Consensus 670 ~y~~~g~~~~ 679 (830)
..+..|..++
T Consensus 980 ~lce~~~~~~ 989 (1139)
T 4fhn_B 980 QLTKQGKINQ 989 (1139)
T ss_dssp HHHHHCCHHH
T ss_pred HHHhCCChhh
Confidence 5555555444
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=58.23 E-value=2.8e+02 Score=32.58 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=55.7
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH--hcCCHHHHHHHhhhCC-CCChhhH--HHHHHHHHhcC
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYV--KCGVLVLARSLFDMIP-AKDLISW--TIMIAGYGMHG 538 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~--k~g~~~~A~~~f~~m~-~~d~~~~--~~li~~~~~~g 538 (830)
+.-+|+..|+.....+++..+.+. ++..+-.+.+-+.+ -.|+.+.+.++++.+. ..|...- -++.-|....|
T Consensus 566 lglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 566 IALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 344677888887777777777653 22223333333333 3566666777776543 2343332 23344444455
Q ss_pred Ch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047408 539 FG-CDAIATFNDMRQAGIEPDEVSFISVLYACS 570 (830)
Q Consensus 539 ~~-~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 570 (830)
.+ .+|++++..+.. .+|..+-...+.|+.
T Consensus 643 n~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 643 KGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp SCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 54 678888888874 455554333343433
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=56.93 E-value=1.6e+02 Score=29.46 Aligned_cols=168 Identities=11% Similarity=0.019 Sum_probs=100.7
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCChhHHHHHHHHHH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIAT----FNDMRQAGIEPDEVSFISVLYACS 570 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~Pd~~t~~~ll~a~~ 570 (830)
.+.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.++++|..+...++.-+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677789999999999998653 23456678887776665 444556788888887777776655
Q ss_pred ccCCHH-HHHHHHHHhH---hhcCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 047408 571 HSGLVD-EGWRFFNMMR---YECNIEP--KLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIH---H 641 (830)
Q Consensus 571 ~~g~~~-~a~~~~~~m~---~~~~~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~---g 641 (830)
.-..-+ +=.++.+.+. .+.|-.| +++....+...|.+.|++.+|+.-|- ....-|+..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCC
Confidence 432111 0112222221 1222222 56677888899999999999988664 22111345555555555444 4
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
...++-..+-+ .+-.|...|+...|..++....
T Consensus 183 ~~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 43333222221 1234556788888888877654
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.17 E-value=53 Score=34.98 Aligned_cols=93 Identities=6% Similarity=-0.102 Sum_probs=56.1
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCChhHHHHH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPA------KDLISWTIMIAGYGMHGFGCDAIATFNDMRQ---AGIEPDEVSFISV 565 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~Pd~~t~~~l 565 (830)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..|...+++... .+-.|+...-...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556788888888888888888877642 1234566677777777888888877777653 2222322221111
Q ss_pred H--HHHHccCCHHHHHHHHHHhHh
Q 047408 566 L--YACSHSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 566 l--~a~~~~g~~~~a~~~~~~m~~ 587 (830)
- -.+...+++.+|-+.|-....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1 123345666666666655443
No 275
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.44 E-value=2e+02 Score=30.03 Aligned_cols=323 Identities=14% Similarity=0.121 Sum_probs=135.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCChh----hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCc-cchHHHHHHHHHh
Q 047408 70 IGRFCEVGNLEKAMEVLYSSEKSKIDTK----TYCSILQLCADLKSLEDGKKVHSIICESGIVIDD-GVLGSKLVFMFVT 144 (830)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~~li~~y~~ 144 (830)
+..-+..|+.+-+..+++. |.++. ...+.|...+..|+.+-.+ .+++.|...+. .....+.+...++
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHHHH
Confidence 4444566776665555543 22221 1122334444556655433 34444543320 0112234445556
Q ss_pred CCChHHHHHHHhcCCCCCc---chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCc---ccHHHHHHHHHhcCCCCCHH
Q 047408 145 CGDLKEGRRVFNKIDNGKV---FIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADS---YTFSCVLKCLAVVGNSRRVK 218 (830)
Q Consensus 145 ~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~~~ 218 (830)
.|+.+-+.-+++.-..++. .-++. +...++.|+.+-+..++ +.|..++. ..++ .+...+..| ..+
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t-~L~~A~~~g---~~~ 160 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALL----EKEASQACMTKKGFT-PLHVAAKYG---KVR 160 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCC-HHHHHHHTT---CHH
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCC-HHHHHHHcC---CHH
Confidence 6777777666665433322 12222 33344556554433333 33433322 1122 233334445 355
Q ss_pred HHHHHHhhCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH--HHHHHHHhcCCChHHHHHHHHHH
Q 047408 219 DAHKLFDELSDRD---VVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATM--VTVLSGCANCGALMFGRAVHAFA 293 (830)
Q Consensus 219 ~A~~lf~~m~~~~---~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~~~~l~~~~ 293 (830)
-+..+++.-..++ ...++.| ...+..|+. ++++.+.+.|..|+.... .+.|...+..|+.+..+ .+
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~L 231 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPL-HVAVHHNNL----DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR----SL 231 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHH-HHHHHTTCH----HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH----HH
T ss_pred HHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCH----HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH----HH
Confidence 5555555433322 2222233 333445554 344444555555443211 12233333445544333 33
Q ss_pred HHhCCCCCch--HHHHHHHHhhcCCChHHHHHHHhhcCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 047408 294 LKACFSKEIS--FNNTLLDMYSKCGDLDGAIRVFEKMGERS---VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV 368 (830)
Q Consensus 294 ~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 368 (830)
++.|..++.. ...+.+...++.|..+-...+++.-..++ ...++.+. ..++.|..+ +++.+.+.|..+|.
T Consensus 232 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-LVAQEGHVP----VADVLIKHGVMVDA 306 (437)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHH----HHHHHHHHTCCTTC
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCccCCC
Confidence 3444433221 11233444556677766666665433322 22223332 223444433 33444445554443
Q ss_pred ch---HHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhh--HHHHHHHHHhcCChHHHHHHHhc
Q 047408 369 YA---ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYV--SNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 369 ~t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
.. .+. |...+..|+.+. .+.+++.|..++... ..+-+..-++.|..+-+..+++.
T Consensus 307 ~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 307 TTRMGYTP-LHVASHYGNIKL----VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp CCSSCCCH-HHHHHHSSCSHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCH-HHHHHHcCcHHH----HHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC
Confidence 21 222 223334454443 333344444333211 11223334456666655555543
No 276
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.34 E-value=1.3e+02 Score=27.71 Aligned_cols=60 Identities=7% Similarity=0.002 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
++..+....+....+.|..+....+.+.+..+|...-...+.++.+.|.. +++..+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l 152 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKAL 152 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 34444444445555555444333444444444444444444445444442 2334444433
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.74 E-value=53 Score=26.59 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=57.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 047408 109 LKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKK 188 (830)
Q Consensus 109 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 188 (830)
...-++|..|-+.+...+- . ..+.-.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--E-EAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--H-HHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 3456778778777777653 2 33333344457788999999999999999999999888553 56766777666666
Q ss_pred HHHcC
Q 047408 189 MQSLG 193 (830)
Q Consensus 189 m~~~g 193 (830)
+..+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 66554
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.63 E-value=52 Score=26.60 Aligned_cols=80 Identities=10% Similarity=-0.045 Sum_probs=58.9
Q ss_pred cCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 047408 109 LKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKK 188 (830)
Q Consensus 109 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 188 (830)
...-++|..|-+.+...+- . ..+.-.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~-E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--D-EAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--H-HHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--H-HHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3456777777777777653 2 3333334445778899999999999999999999988854 467877777777777
Q ss_pred HHHcC
Q 047408 189 MQSLG 193 (830)
Q Consensus 189 m~~~g 193 (830)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 77665
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=54.10 E-value=2.7e+02 Score=31.06 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcc
Q 047408 305 NNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLL 384 (830)
Q Consensus 305 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 384 (830)
-+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|....+++-..|- ........++..+.+.|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC
Confidence 34556667778888888886666 433444455566777888888888887777766552 2334455565555544443
No 280
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=53.82 E-value=51 Score=28.37 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 612 SEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 612 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..++.-+-.+.+-|++.+..+-|.+|++.+|+..|.+++|-+...-.+...+|--
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y 127 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY 127 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHH
Confidence 3444444456788999999999999999999999999999776433232444543
No 281
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.75 E-value=3.4e+02 Score=31.89 Aligned_cols=279 Identities=11% Similarity=0.073 Sum_probs=131.4
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHHHcCCCCCcchHHHHHH-HhhccCcchhhhhHHHHHHhhc--CCCchhhHHHHHHH
Q 047408 337 TSMIAGYAREGVFDGA-IRLFRGMVREGIEPDVYAITSILH-ACACDGLLEIGKDVHDYIKEND--MQSSLYVSNALMDM 412 (830)
Q Consensus 337 ~~li~~~~~~g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~ 412 (830)
.++.+|+...|-..+. +.......-+. -+..-+.++.. +....|+.+++..++...+..+ -.+.......+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3567788887765443 22111111111 12222232222 4567788888877777655421 12233445555566
Q ss_pred HHhcCChHHHHHHHhcCCC-CC---------chhHHHHHH------------HHHHHHHHHhCCCCCccc--cc--cchh
Q 047408 413 YAKCGSMADAESVFNQMPV-KD---------IVSWNTMIG------------ALDLFVAMLQNFEPDGVT--MA--CILP 466 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~m~~-~~---------~~~~n~~i~------------al~~f~~m~~~~~pd~~t--~~--~ll~ 466 (830)
...+|.-+++..++..... .+ .+.-.+.++ +++.+..+.... +..+ .. ++-.
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND--SATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Confidence 6677776667765554321 11 111122222 344444444322 1111 01 1111
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH--hcCCHHHHHHHhhhCC-CCCh-hhHHH---HHHHHHhcCC
Q 047408 467 ACASLAALERGREIHGYILRHGISADRNVANAIVDMYV--KCGVLVLARSLFDMIP-AKDL-ISWTI---MIAGYGMHGF 539 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~--k~g~~~~A~~~f~~m~-~~d~-~~~~~---li~~~~~~g~ 539 (830)
.+...|+-+....+...+.+. .+..+...++-+.+ -.|+.+.+..+.+.+. ..|. +-|.+ +..+|+-.|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 123345555556666665542 22333333443333 4566666666655543 2332 33432 3345667777
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHH--HHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH-HHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEVSFISVL--YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNL-SEAYR 616 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~-~eA~~ 616 (830)
.....++++.+... ++...-...+ -+....|..+.+.++++.+... ..|.+..-.++.-++.-+|.. .+|.+
T Consensus 576 ~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 576 NSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp HHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 66555688777763 2222212222 2333455555555666544422 234444444444444445543 56777
Q ss_pred HHHhCCCCCCH
Q 047408 617 FIEMMPVAPDA 627 (830)
Q Consensus 617 ~~~~m~~~p~~ 627 (830)
.+..+...+|.
T Consensus 651 ~L~~L~~D~d~ 661 (963)
T 4ady_A 651 VLDPLTKDPVD 661 (963)
T ss_dssp HHHHHHTCSSH
T ss_pred HHHHHccCCCH
Confidence 77776444554
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.88 E-value=77 Score=31.19 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=8.8
Q ss_pred HHHHHHhcCChHHHHHHHh
Q 047408 409 LMDMYAKCGSMADAESVFN 427 (830)
Q Consensus 409 Li~~y~k~g~~~~A~~~f~ 427 (830)
.+...++.|..+-+..+++
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHH
Confidence 3344445555554444443
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=51.16 E-value=92 Score=30.44 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=23.7
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
.+.|.++++++....-.+. -+-|...-..++.+|+-.|+|+.|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555544443321 1113444555555555555555555544443
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.01 E-value=1.3e+02 Score=27.95 Aligned_cols=22 Identities=14% Similarity=-0.021 Sum_probs=12.4
Q ss_pred HHHHhhcCCChHHHHHHHhhcC
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMG 329 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~ 329 (830)
-+....+.|+.+-+..+++...
T Consensus 213 ~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 213 ALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHHcCcHHHHHHHHHhhh
Confidence 4455566666666666665543
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.00 E-value=3.1e+02 Score=30.83 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHh
Q 047408 132 GVLGSKLVFMFVTCGDLKEGRRVFNKIDN---GKVFIWNLLMHEYSK 175 (830)
Q Consensus 132 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 175 (830)
..+| ++|--+.|||++++|.++..+... .-...+-..+..|+.
T Consensus 153 ~p~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 153 VPIW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp EEHH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred cccH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 3455 466777899999999998877642 111356666777764
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.56 E-value=66 Score=34.21 Aligned_cols=92 Identities=9% Similarity=0.051 Sum_probs=53.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcc----hH
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-----PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELE--PDNTG----YY 664 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~~~~----~~ 664 (830)
....-+.+.|.+.|++++|.+.+.++ ....-...|-..+..|...+|+..+....+++..+. ..++. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35556677777777777777777666 112223556666777777777777777777664321 11111 12
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHH
Q 047408 665 VLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 665 ~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
..-+-++...++|.+|.+.+-..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHH
Confidence 33344555667777777766543
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.56 E-value=1.2e+02 Score=30.40 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=45.1
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCh
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPAKD---LISWTIMIAGYGMHGF--GCDAIATFNDMRQAGIEPDE 559 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~Pd~ 559 (830)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 4578888999999999999999998663 2345555566665433 45567888888876654443
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.76 E-value=1.4e+02 Score=27.91 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=17.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 047408 239 ISGYIANGVAEKGLEVFKEMLNLGFNVDL 267 (830)
Q Consensus 239 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 267 (830)
+...++.|+.+-...+++.+.+.|..++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 41 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDI 41 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 34455667777666666666666655543
No 289
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.34 E-value=41 Score=32.48 Aligned_cols=184 Identities=10% Similarity=-0.056 Sum_probs=88.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhh-------HHHHHHHHh--cCCChHHHHHHHHHHHHhC---------CCCCc
Q 047408 241 GYIANGVAEKGLEVFKEMLNLGFNVDLAT-------MVTVLSGCA--NCGALMFGRAVHAFALKAC---------FSKEI 302 (830)
Q Consensus 241 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~~~~l~~~~~~~g---------~~~~~ 302 (830)
..++.|+.+....+++.+...|..++... .+.+..|+. +.|+.+..+.+...-...+ +....
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34456677766666666666666555332 233444432 4566666666665543211 11100
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHhhcCCCCe-----------------ehHHHHHHHHHhcCChhHHHHHHHHHHH---c
Q 047408 303 SFNNTLLDMYSKCGDLDGAIRVFEKMGERSV-----------------VSWTSMIAGYAREGVFDGAIRLFRGMVR---E 362 (830)
Q Consensus 303 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~---~ 362 (830)
....+.+...+..|+.+-+..+++.-..++. .-++.+. ..+..|+. ++.+.+.+ .
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~-~A~~~g~~----~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS-LAACTNQP----HIVHYLTENGHK 165 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHH-HHHHTTCH----HHHHHHHHCSSC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHH-HHHHcCCH----HHHHHHHhcccc
Confidence 1223345555667888777777775443322 2333333 33455653 34444555 5
Q ss_pred CCCCCcc---hHHHHHHHhhccCc----chhhhhHHHHHHhhcCCCc---------hhhHHHHHHHHHhcCChHHHHHHH
Q 047408 363 GIEPDVY---AITSILHACACDGL----LEIGKDVHDYIKENDMQSS---------LYVSNALMDMYAKCGSMADAESVF 426 (830)
Q Consensus 363 g~~pd~~---t~~~ll~a~~~~~~----~~~a~~~~~~~~~~g~~~~---------~~~~~~Li~~y~k~g~~~~A~~~f 426 (830)
|..++.. -.+.|..++..... .+...++.+.+++.|..++ ..-..+-+..-++.|+.+-+..++
T Consensus 166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 245 (260)
T 3jxi_A 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245 (260)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence 6555432 23334334322111 2222345555555543321 011223344456677777776666
Q ss_pred hcC
Q 047408 427 NQM 429 (830)
Q Consensus 427 ~~m 429 (830)
+.-
T Consensus 246 ~~g 248 (260)
T 3jxi_A 246 RRE 248 (260)
T ss_dssp HHH
T ss_pred HhC
Confidence 543
No 290
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=42.64 E-value=6.4 Score=25.73 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.9
Q ss_pred cccccccccchh
Q 047408 786 NLRVCGDCHEMA 797 (830)
Q Consensus 786 nlr~c~dch~~~ 797 (830)
|-|||.+||--+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 689999999654
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.57 E-value=1.4e+02 Score=27.81 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHhh---C----CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 047408 205 LKCLAVVGNSRRVKDAHKLFDE---L----SDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDL 267 (830)
Q Consensus 205 l~~~~~~g~~~~~~~A~~lf~~---m----~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 267 (830)
|...+..|+ .+....+++. - ..+|..-++.|. ..+..|+.+ +++.+.+.|..|+.
T Consensus 13 L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~ 74 (241)
T 1k1a_A 13 LHIAVVQGN---LPAVHRLVNLFQQGGRELDIYNNLRQTPLH-LAVITTLPS----VVRLLVTAGASPMA 74 (241)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTC
T ss_pred HHHHHHcCC---HHHHHHHHHHHHhcCCCCCcccccCCCHHH-HHHHcCCHH----HHHHHHHcCCCccc
Confidence 334445563 6655555552 1 123433444443 344555543 44455556665543
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.06 E-value=1.2e+02 Score=28.20 Aligned_cols=75 Identities=8% Similarity=0.105 Sum_probs=53.6
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHH
Q 047408 98 TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEY 173 (830)
Q Consensus 98 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~ 173 (830)
.|...+..| ..++...+..+|..|...|+-..-...|-.....+-..|++.+|.+||..-.++++.....|...|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 344444443 133466899999999999887775677888888888999999999999876666555555554443
No 293
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.84 E-value=72 Score=32.03 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=43.7
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 618 IEMMPVAPDA--TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 618 ~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
|..-+++|.. .++.+-++.+.+++|+..|-..+++++++.|... ..++|.++...-...+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3333666653 5677788889999999999999999999988621 3456777766665543
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.62 E-value=1.1e+02 Score=29.30 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=9.7
Q ss_pred HHHhhcCCChHHHHHHHhh
Q 047408 309 LDMYSKCGDLDGAIRVFEK 327 (830)
Q Consensus 309 i~~y~k~g~~~~A~~~f~~ 327 (830)
+...++.|+.+-+..+++.
T Consensus 229 L~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344455555555555544
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.34 E-value=2.2e+02 Score=26.03 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 047408 132 GVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVV 211 (830)
Q Consensus 132 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 211 (830)
..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .+|...-...+.++...
T Consensus 64 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 64 AWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHc
Confidence 444444455555555544444444444455555555555555555543 23333333332 34544555555555555
Q ss_pred CCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047408 212 GNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLN 260 (830)
Q Consensus 212 g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 260 (830)
++.+ ....+...+..+|...-...+.++.+.+. .++...+.++..
T Consensus 140 ~~~~---~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 140 GDER---AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CCGG---GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 5311 11112222233444444444444444443 344444444443
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.21 E-value=1.5e+02 Score=26.74 Aligned_cols=52 Identities=6% Similarity=0.119 Sum_probs=26.0
Q ss_pred hhcCCChHHHHHHHhhcC-C---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc
Q 047408 312 YSKCGDLDGAIRVFEKMG-E---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV 368 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~-~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 368 (830)
.+..|+.+....+++.-. . +|..-++.+.. .++.|+. ++++.+.+.|..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~ 67 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINL 67 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTC
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCC
Confidence 345667777777766543 2 23223333333 3344543 344555556665554
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.85 E-value=1.5e+02 Score=26.06 Aligned_cols=77 Identities=5% Similarity=-0.020 Sum_probs=52.7
Q ss_pred HHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAPDA---TIWGSLLCGCRIHHEVKLAEKVAEHVFE--LEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+.+.+.|... ..+-|+ -+|-..+..| +....+++.+.. +.-..+..|...+..+...|++++|.++++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555444 234455 3555554433 237778887764 455667789999999999999999999998
Q ss_pred HHHhCCCcC
Q 047408 686 KISRRGLKK 694 (830)
Q Consensus 686 ~m~~~g~~~ 694 (830)
.-.+++.+|
T Consensus 126 ~Gi~~~A~P 134 (152)
T 4a1g_A 126 RGIQNQAEP 134 (152)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCcc
Confidence 877766554
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.46 E-value=1.1e+02 Score=29.99 Aligned_cols=181 Identities=10% Similarity=0.060 Sum_probs=87.9
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHccCCH
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAKDLI-SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS---FISVLYACSHSGLV 575 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t---~~~ll~a~~~~g~~ 575 (830)
+...++.|+.+-+..+++.-...+.. -++ .+...+..|+.+ +++.+.+.|..|+... .+.|..|+ ..|..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~-~~g~~ 108 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEF-PLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALYYAV-DSGNM 108 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCC-HHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHHHHH-HcCCH
Confidence 34445566666666666542221111 122 233334556644 3344445566665432 23333333 45666
Q ss_pred HHHHHHHHHhHhhcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 576 DEGWRFFNMMRYECNIEPKL---EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDA-TIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 576 ~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
+-...+++. |..++. .-+.+.+....+.|+.+-+.-+++.-+...+. .-+..|. .....|+.+..+.+.+
T Consensus 109 ~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 109 QTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIH-ITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHH-HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHH-HHHHcChHHHHHHHHH
Confidence 555444432 443332 12123444455678877766666665433333 3344444 4456789988888887
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCC
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNP 696 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~ 696 (830)
.-...+..+..-.......-+..|+.+ +.+.+.+.|..+..
T Consensus 183 ~gad~n~~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 183 YMTSTNTNNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYS 223 (285)
T ss_dssp HHHHTCTTCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTT
T ss_pred cCCCCCcccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCC
Confidence 765554333221111111223345533 34445666766544
No 299
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.62 E-value=1.6e+02 Score=26.43 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=9.2
Q ss_pred HhhcCCChHHHHHHHhhc
Q 047408 311 MYSKCGDLDGAIRVFEKM 328 (830)
Q Consensus 311 ~y~k~g~~~~A~~~f~~m 328 (830)
..++.|+.+-+..+++.-
T Consensus 112 ~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHHTTCHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 344455555555555443
No 300
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=36.71 E-value=2.2e+02 Score=26.25 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=12.3
Q ss_pred HHHHhhcCCChHHHHHHHhh
Q 047408 308 LLDMYSKCGDLDGAIRVFEK 327 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~ 327 (830)
.+...++.|+++....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 34455566777777666654
No 301
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.95 E-value=2.5e+02 Score=25.38 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACA 379 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 379 (830)
++..+....+....+.|..+....+.+.+..+|...-...+.++.+.+.. +++..+.++.. .+|...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 44444455555555555544444444444444444444444445444432 33334444332 233333334444444
Q ss_pred ccC
Q 047408 380 CDG 382 (830)
Q Consensus 380 ~~~ 382 (830)
..+
T Consensus 164 ~~~ 166 (201)
T 3ltj_A 164 EIG 166 (201)
T ss_dssp HHC
T ss_pred HhC
Confidence 443
No 302
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=35.46 E-value=11 Score=27.77 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=17.9
Q ss_pred cceEEEecCCccccccCccccC
Q 047408 805 RREIVLRDSNRFHHFKDGRCSC 826 (830)
Q Consensus 805 ~r~i~~rd~~rfh~f~~g~csc 826 (830)
...|=+.|.+-.|+||||+-+-
T Consensus 7 ~k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEEBTTSCEEEEETTSCEEE
T ss_pred eeeEecCCCcEEEEEcCCceeh
Confidence 3457789999999999998653
No 303
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.40 E-value=2.4e+02 Score=28.55 Aligned_cols=20 Identities=0% Similarity=0.001 Sum_probs=11.3
Q ss_pred HHHHHhcCChHHHHHHHhcC
Q 047408 410 MDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 410 i~~y~k~g~~~~A~~~f~~m 429 (830)
+..-+..|+.+-+..+++.-
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHhcc
Confidence 33445566666666666543
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.08 E-value=2.3e+02 Score=28.68 Aligned_cols=16 Identities=0% Similarity=0.104 Sum_probs=8.4
Q ss_pred HHhcCChHHHHHHHhc
Q 047408 413 YAKCGSMADAESVFNQ 428 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~ 428 (830)
-++.|..+-+..+++.
T Consensus 251 A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 251 SVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHTCCHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHc
Confidence 3445555555555554
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.03 E-value=2.9e+02 Score=25.56 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=69.4
Q ss_pred HHHHhhcCCChHHHHHHHhhcC-C---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchH--HHHHHHhhcc
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMG-E---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI--TSILHACACD 381 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~-~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~ 381 (830)
.+...+..|+.+-+..+++.-+ . +|...++.+.. .+..|+. ++++.+.+.|..++.... .+.+...+..
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 154 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW-ATEYKHV----DLVKLLLSKGSDINIRDNEENICLHWAAFS 154 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHH-HHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHC
Confidence 4444556677766666665531 1 22223333332 3344543 344555556655543321 1223333333
Q ss_pred CcchhhhhHHHHHHhhcCCCchh--hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcc
Q 047408 382 GLLEIGKDVHDYIKENDMQSSLY--VSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGV 459 (830)
Q Consensus 382 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~ 459 (830)
|+. ++.+.+++.|..++.. ...+.+...++.|+.+-+.-+++.-...+. .|..
T Consensus 155 ~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~---------------------~d~~ 209 (237)
T 3b7b_A 155 GCV----DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---------------------KNKE 209 (237)
T ss_dssp CCH----HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC---------------------CCTT
T ss_pred CCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc---------------------cCCC
Confidence 443 3444455555444322 112344455566777766666654332221 1211
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHH
Q 047408 460 TMACILPACASLAALERGREIHGYILR 486 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~ 486 (830)
-.+.+...+..+..+.+.++.+.+.+
T Consensus 210 -g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 210 -GETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp -SCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12344445566677777777666554
No 306
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.01 E-value=1.9e+02 Score=25.78 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=52.6
Q ss_pred HHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAPDA---TIWGSLLCGCRIHHEVKLAEKVAEHVFE--LEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+.+...|... ..+-|. -+|--++..| ++ ...+++.+.. +.-..+..|...+..|...|++.+|.++++
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444443 234454 4566555544 33 5567777764 556667889999999999999999999999
Q ss_pred HHHhCCCcC
Q 047408 686 KISRRGLKK 694 (830)
Q Consensus 686 ~m~~~g~~~ 694 (830)
.-.+++.+|
T Consensus 121 ~Gi~~~A~P 129 (164)
T 2wvi_A 121 EGIQQKAEP 129 (164)
T ss_dssp HHHHTTCBS
T ss_pred HHHHcCCCc
Confidence 888776654
No 307
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.53 E-value=2.7e+02 Score=25.72 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=17.3
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCC
Q 047408 464 ILPACASLAALERGREIHGYILRHGISA 491 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 491 (830)
.+...+..|..+...++.+.+++.|..+
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3444455566776667777777776543
No 308
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=32.96 E-value=1.8e+02 Score=31.58 Aligned_cols=193 Identities=10% Similarity=0.057 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhCC-CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 475 ERGREIHGYILRHGI-SADRNVANAIVDMYVKCGVLVLARSLFDMIPAK-DLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
-+|.+.+..+.+.|. .++ .+...+.+|.++|.+.... +.........-|...+.++.|+++.-..-+
T Consensus 27 ~KA~E~L~~Ak~~~~~d~~-----------~~~~~L~eAl~Lf~~va~~l~l~~L~~~c~~~~~l~~y~GaVeL~L~~A~ 95 (525)
T 3i5p_A 27 FRAIEHLRRAKEIGLRNYD-----------SLNYHLKNATALLEQIVDDLSIEKLKEAVSMMLSVNYYPKSIEFLLNIAN 95 (525)
T ss_dssp HHHHHHHHHHHHC----CH-----------HHHHHHHHHHC----------CHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHH-----------HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 356666666666553 122 1222356777888775422 333344457778888888888888766654
Q ss_pred cCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH-----------------HHHH
Q 047408 553 AGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNL-----------------SEAY 615 (830)
Q Consensus 553 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~-----------------~eA~ 615 (830)
. ..|....+..+-.++-... ++.+.|+.= ...|.++.+++.+.... +++.
T Consensus 96 ~-~Dp~~~Al~~~~~g~p~~D---~~~~~f~~R---------~~cY~~I~~~L~~ld~~a~~~~~~~~~~~~~~~~~~~~ 162 (525)
T 3i5p_A 96 S-MDKGKLACQYVANGFLEND---DRKQYYDKR---------ILVYDLVFDTLIKVDELAEKKQSSKTQNQISISNDDEV 162 (525)
T ss_dssp H-HHCSSHHHHHHHHTCSSSS---SCHHHHHHH---------HHHHHHHHHHHHHTC-----------------------
T ss_pred h-hCCcccHHHHHhCCCCCcC---HHHHHHHHH---------HHHHHHHHHHHHHHHHHhhccCCCCCCccccccchhHH
Confidence 4 4666665544433332211 233333321 13455555554432111 1122
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHH-----HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 616 RFIEMM----PVAPDATIWGSLLCGCRIHHEVKLAEK-----VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 616 ~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~-----~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
+..+++ --.+|......|-.-+..+|..++-.. +-.-+.+..|++.....+|-.-|.+.|++-+|.++.-.
T Consensus 163 ~~~~~~~~~~l~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~ 242 (525)
T 3i5p_A 163 KLRQKSYEAALKYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYR 242 (525)
T ss_dssp -CCSTTHHHHSSSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHH
Confidence 221121 223455444444444555554432221 01112224566777888999999999999999999988
Q ss_pred HHhCC
Q 047408 687 ISRRG 691 (830)
Q Consensus 687 m~~~g 691 (830)
+..++
T Consensus 243 LA~s~ 247 (525)
T 3i5p_A 243 LATSN 247 (525)
T ss_dssp HHSSS
T ss_pred HHhCC
Confidence 88763
No 309
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.81 E-value=1.9e+02 Score=26.83 Aligned_cols=207 Identities=10% Similarity=-0.000 Sum_probs=95.8
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchh--HHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRN--VANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~ 539 (830)
+...+..|+.+ +...+++.|..++.. .....+...++.|+.+-+..+++.-. .++...++.+.. .+..|+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 89 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL-AAKKGH 89 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH-HHHTTC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH-HHHcCC
Confidence 44444555554 344445556544321 12234445566788887777776533 223333333333 334555
Q ss_pred hHHHHHHHHHHHHcC-CCCChh---HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc--hHHHHHHHHHhcCCHHH
Q 047408 540 GCDAIATFNDMRQAG-IEPDEV---SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE--HYACMVDLLSRTGNLSE 613 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g-~~Pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~y~~lv~~l~r~g~~~e 613 (830)
.+ +++.+.+.| ..++.. ..+.+..| ...|..+-...+++ +|..++.. .-...+....+.|+.+-
T Consensus 90 ~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 90 YE----VVQYLLSNGQMDVNCQDDGGWTPMIWA-TEYKHVDLVKLLLS-----KGSDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HH----HHHHHHTTTCCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HH----HHHHHHhCCCCCcccCCCCCCCHHHHH-HHcCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence 43 344444444 333221 22233333 34455544433332 24444321 11122333445677665
Q ss_pred HHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 614 AYRFIEMMPVAPD---ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 614 A~~~~~~m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.-+++.- ..++ ..-+ +.+......|+.+....+.++-...+..+..-. .-..+-...|+.+.+.++.+.+.+
T Consensus 160 ~~~Ll~~g-~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~-t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 160 AEILLAAK-CDLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHTTT-CCTTCCCTTCC-CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC-CHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCcCCCCC-CHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCC-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555442 2222 1112 233344557788777666654333322221111 122344566777788888887765
No 310
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.71 E-value=1.5e+02 Score=28.62 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=12.6
Q ss_pred HHHHHHhcCChHHHHHHHhc
Q 047408 409 LMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 409 Li~~y~k~g~~~~A~~~f~~ 428 (830)
-+..-++.|..+-+..+++.
T Consensus 236 pL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 236 PLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHC
Confidence 34455677777777666654
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.07 E-value=3e+02 Score=25.25 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=8.0
Q ss_pred HHhhcCCChHHHHHHHhh
Q 047408 310 DMYSKCGDLDGAIRVFEK 327 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~ 327 (830)
...++.|+.+-+..+++.
T Consensus 47 ~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 47 HWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHc
Confidence 333444444444444443
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.00 E-value=2.2e+02 Score=24.99 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHH
Q 047408 115 GKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLL 169 (830)
Q Consensus 115 a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 169 (830)
+..+|..|...|+-..-...|......+-..|++.+|.+||..-.++++.....|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 5666666666665544344455555555555666666555554443333333333
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.73 E-value=1.4e+02 Score=25.37 Aligned_cols=64 Identities=6% Similarity=0.078 Sum_probs=44.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCh
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPAKD---LISWTIMIAGYGMHGF--GCDAIATFNDMRQAGIEPDE 559 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~Pd~ 559 (830)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4568888999999999999999987663 2344555556665542 35677888888776654433
No 314
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.16 E-value=7.8e+02 Score=28.80 Aligned_cols=232 Identities=13% Similarity=0.028 Sum_probs=104.7
Q ss_pred HhcCC--hHHHHHHHhcCC-CCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh--C
Q 047408 414 AKCGS--MADAESVFNQMP-VKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH--G 488 (830)
Q Consensus 414 ~k~g~--~~~A~~~f~~m~-~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g 488 (830)
++.|. +..+..+..-+. +.+.+.|.+++..+..+..+.... +....+...+. .....++..+... +
T Consensus 605 a~ag~~~~~~~l~l~~~l~~E~~y~~w~~~~~~l~~l~~~~~~~-~~~~~~~~~~~--------~l~~~~~~~l~~~~~~ 675 (909)
T 4fke_A 605 ATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSLMFDRS-EVYGPMKKYLR--------KQVEPLFQHFETLTKN 675 (909)
T ss_dssp HHTTSSCHHHHHHTTGGGGGCCSHHHHHHHHHHHHHHHHHHTTS-TTHHHHHHHHH--------HHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHH--------HHHHHHHHHhhhhhcc
Confidence 45554 455666655554 568889999999888887776431 11111111110 1112222222111 1
Q ss_pred C--CCch----hHHhHHHHHHHhcCC---HHHHHHHhhhCC-CC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 489 I--SADR----NVANAIVDMYVKCGV---LVLARSLFDMIP-AK-----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 489 ~--~~~~----~~~~~Li~~y~k~g~---~~~A~~~f~~m~-~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
. .++. ..-..++...|+.|. .++|.+.|+... .+ +...-+.....-.++|..++-..++++....
T Consensus 676 ~~~~~~~~~~~~lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~ 755 (909)
T 4fke_A 676 WTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA 755 (909)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc
Confidence 1 1111 122345556666664 456777776421 11 1111222233334556655555555555543
Q ss_pred CCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC------CCCCCH
Q 047408 554 GIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM------PVAPDA 627 (830)
Q Consensus 554 g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m------~~~p~~ 627 (830)
. +..--..++.|++...+.+...++++.....-.+++ .+....+..+....--.+-|.+++++- ......
T Consensus 756 ~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~ 831 (909)
T 4fke_A 756 Q---LVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRK-QDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGS 831 (909)
T ss_dssp C---SHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCC
T ss_pred C---CHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1 222234566666666666666666665543212222 222223322222222234555555441 112233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
..+..++.+....-..++...-++..++-.|
T Consensus 832 ~~~~~~i~~~~~~~~t~~~~~~~~~f~~~~~ 862 (909)
T 4fke_A 832 FSFSNLIQGVTRRFSSEFELQQLEQFKKNNM 862 (909)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Confidence 3455566555544444444444455554443
No 315
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=27.71 E-value=7.4 Score=29.91 Aligned_cols=14 Identities=43% Similarity=0.982 Sum_probs=10.9
Q ss_pred ecccccccccchhh
Q 047408 785 KNLRVCGDCHEMAK 798 (830)
Q Consensus 785 knlr~c~dch~~~k 798 (830)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 44699999998653
No 316
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.43 E-value=3.6e+02 Score=24.67 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=12.9
Q ss_pred HHHHHHhCCChHHHHHHHhc
Q 047408 138 LVFMFVTCGDLKEGRRVFNK 157 (830)
Q Consensus 138 li~~y~~~g~~~~A~~~f~~ 157 (830)
.+...++.|+++....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 34555667777777777664
No 317
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=25.62 E-value=3.5e+02 Score=26.14 Aligned_cols=216 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCChHHHHH--------------HHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcch
Q 047408 305 NNTLLDMYSKCGDLDGAIR--------------VFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYA 370 (830)
Q Consensus 305 ~~~Li~~y~k~g~~~~A~~--------------~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 370 (830)
..+.+...+..|+.++..+ +-.....+|..-++.|..+..... .++++.+.+.|..++...
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~-----~~~v~~Ll~~g~~~~~~~ 89 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH-----QLSLRNLISQGWAVNIIT 89 (285)
T ss_dssp ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTC-----HHHHHHHHHTTCCSCEEC
T ss_pred HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCcC
Q ss_pred HH--HHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 047408 371 IT--SILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFV 448 (830)
Q Consensus 371 ~~--~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~ 448 (830)
.. +.|...+..|+.+.++.+++. ...+.....-..+-+...+..|..+-+..+++.-...+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------------- 153 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-------------- 153 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--------------
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--------------
Q ss_pred HHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchh--HHhHHHHHHHhcCCHHHHHHHhhhCCCCCh-h
Q 047408 449 AMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRN--VANAIVDMYVKCGVLVLARSLFDMIPAKDL-I 525 (830)
Q Consensus 449 ~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-~ 525 (830)
.+. -.+.+...+..|..+ +...+++.|..++.. .....+...++.|+.+-+..+++.-...+. .
T Consensus 154 -------~~~--g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 220 (285)
T 3d9h_A 154 -------ESD--LASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220 (285)
T ss_dssp -------SCT--TSCHHHHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred -------CCC--CCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
...+-+...++.|+. ++++.+.+.|..++
T Consensus 221 ~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 221 GQDSPLHAVVRTASE----ELACLLMDFGADTQ 249 (285)
T ss_dssp TTBCHHHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred CCCCHHHHHHHcCCH----HHHHHHHHCCCCCC
No 318
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.32 E-value=1.3e+02 Score=28.52 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=9.4
Q ss_pred HHHhhcCCChHHHHHHHhh
Q 047408 309 LDMYSKCGDLDGAIRVFEK 327 (830)
Q Consensus 309 i~~y~k~g~~~~A~~~f~~ 327 (830)
+...++.|..+-+.-+++.
T Consensus 225 L~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhC
Confidence 3344455555555555443
No 319
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=25.09 E-value=14 Score=20.77 Aligned_cols=13 Identities=38% Similarity=1.214 Sum_probs=8.8
Q ss_pred cccCccc--cCCCCC
Q 047408 818 HFKDGRC--SCRGFW 830 (830)
Q Consensus 818 ~f~~g~c--sc~d~w 830 (830)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4777877 566655
No 320
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.56 E-value=1.8e+02 Score=26.06 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHH
Q 047408 113 EDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMH 171 (830)
Q Consensus 113 ~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 171 (830)
+.+..+|..|...|+-..-...|-.....+-..|++..|.+||..-...++.....|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 34667888888888776645666777777777778888877777655444444444433
No 321
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.42 E-value=2.2e+02 Score=26.24 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 611 LSEAYRFIEMMPVAPDAT-------IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 611 ~~eA~~~~~~m~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
++.|+.+++.+.-+-|.. +=...+..|...|.+++|++++++.++-+|.+...-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~ 155 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKS 155 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHH
Confidence 566777777764333321 1123345699999999999999999988777654433
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.27 E-value=5.4e+02 Score=25.77 Aligned_cols=30 Identities=7% Similarity=-0.181 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 555 (830)
+..+-|....+++++..|..+-+++++.+-
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 566667778899999999999999998554
No 323
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.92 E-value=2e+02 Score=24.35 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCCC---eehHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCC
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGERS---VVSWTSMIAGYAREGV--FDGAIRLFRGMVREGIE 365 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 365 (830)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+....++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 678888888899999999999987662 2334455555555432 35677788888776643
No 324
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=23.81 E-value=5.5e+02 Score=25.57 Aligned_cols=39 Identities=8% Similarity=0.151 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 047408 234 SWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVL 274 (830)
Q Consensus 234 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 274 (830)
.|-.++-+++..-...+|..+.+.|.. ...|..++..+|
T Consensus 73 ~f~~ll~~l~~~~~~~dA~~L~~A~kg--~Gtde~~lieIL 111 (315)
T 1dm5_A 73 NYEAAALALLRKPDEFLAEQLHAAMKG--LGTDKNALIDIL 111 (315)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred cHHHHHHHHccChhHHHHHHHHHHhhc--CCCchhhhhhhH
Confidence 355566666665445667777777754 345666665555
No 325
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=23.02 E-value=65 Score=27.34 Aligned_cols=54 Identities=31% Similarity=0.378 Sum_probs=40.8
Q ss_pred HHHHHHHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCCCCCeEEEEecccccccc
Q 047408 729 RLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDC 793 (830)
Q Consensus 729 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~~~~~~~~~knlr~c~dc 793 (830)
++.+++|+.-|.| ..||..++|-+.-||-+.|||-..+|+.---.+==-||.-|
T Consensus 105 kl~rK~KReitFh-----------gAKEvalsystgALasCmgliYnrmGtvt~e~a~G~vCAtC 158 (165)
T 2z16_A 105 KLYKKLKREITFH-----------GAKEVALSYSTGALASCMGLIYNRMGTVTTEVAFGLVCATC 158 (165)
T ss_dssp HHHHHHHTCCSHH-----------HHHHHHTTSCHHHHHHHHHHHHTSTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccc-----------cHHHHhhhccchHHHHHHHHHHcCCcceeehhHHHHHHHHH
Confidence 4578888877754 57999999999999999999999999753333333455544
No 326
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.58 E-value=2e+02 Score=27.45 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=18.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHH
Q 047408 238 MISGYIANGVAEKGLEVFKEMLN 260 (830)
Q Consensus 238 li~~~~~~g~~~~A~~l~~~m~~ 260 (830)
-++.+....++++|++++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 36678888999999999887764
No 327
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=21.97 E-value=1.8e+02 Score=27.86 Aligned_cols=87 Identities=9% Similarity=0.005 Sum_probs=42.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCC----ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 531 IAGYGMHGFGCDAIATFNDMRQ--AGIEP----DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 531 i~~~~~~g~~~~A~~l~~~m~~--~g~~P----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
+..+..+.++++|+++.++..+ .++++ +.......+..-.....-.-+..+.+.+. -.++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Confidence 4556666777777777666543 12232 11122222222111111112222333332 13444555666788
Q ss_pred HHhcCCHHHHHHHHHhC
Q 047408 605 LSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m 621 (830)
+.|.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 88888888888877543
No 328
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=21.87 E-value=65 Score=24.65 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHcCcc
Q 047408 723 IESLLKRLRLEMKREGYF 740 (830)
Q Consensus 723 i~~~l~~l~~~~~~~g~~ 740 (830)
+...|++|..++++.|-+
T Consensus 5 vLq~leRLQ~KL~erGd~ 22 (83)
T 1vf6_A 5 VLQVLDRLKMKLQEKGDT 22 (83)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcccc
Confidence 456789999999999953
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.85 E-value=1.3e+02 Score=26.42 Aligned_cols=63 Identities=6% Similarity=0.065 Sum_probs=43.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPAKD---LISWTIMIAGYGMHGF--GCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~Pd 558 (830)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4568888999999999999999987663 2344555556655332 4557777877777664433
No 330
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=20.83 E-value=2.3e+02 Score=24.13 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcC
Q 047408 271 VTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREG 347 (830)
Q Consensus 271 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g 347 (830)
.+.|...+..|+.+..+.+... ....+........+.+.. +..|+.+-+..+++.-.. +|...++.+..+.....
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchH--HHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 047408 348 VFDGAIRLFRGMVREGIEPDVYAI--TSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 348 ~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
.++++.+.+.|..++.... .+.+...+..|+.+..+.+++. ..+.....-..+-+..-++.|+.+-+.-+
T Consensus 81 -----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 81 -----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp -----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Q ss_pred HhcC
Q 047408 426 FNQM 429 (830)
Q Consensus 426 f~~m 429 (830)
++.+
T Consensus 153 l~~~ 156 (156)
T 1bd8_A 153 QGHM 156 (156)
T ss_dssp HTTC
T ss_pred HhhC
No 331
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.83 E-value=2.1e+02 Score=27.02 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=46.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCC--------C-
Q 047408 240 SGYIANGVAEKGLEVFKEMLNLGFNVDL-------ATMVTVLSGCAN--CGALMFGRAVHAFALKACFSK--------E- 301 (830)
Q Consensus 240 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~--~~~~~~~~~l~~~~~~~g~~~--------~- 301 (830)
...++.|+.+....+++.+...|..++. .-.+.+..|+.. .|+.+..+.+...-...+... +
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 86 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDE 86 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCST
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccc
Confidence 3345566766666666666666655443 223334444322 266666665555443322110 0
Q ss_pred chHHHHHHHHhhcCCChHHHHHHHhhcCC
Q 047408 302 ISFNNTLLDMYSKCGDLDGAIRVFEKMGE 330 (830)
Q Consensus 302 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 330 (830)
-....+.+...+..|+.+-+..+++.-..
T Consensus 87 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 87 FYQGHSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 01123344555667777777777766433
No 332
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.50 E-value=1e+02 Score=17.19 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 047408 720 AKKIESLLKRLRLEMKR 736 (830)
Q Consensus 720 ~~~i~~~l~~l~~~~~~ 736 (830)
..++|..|+.|.+.+++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888877766654
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.09 E-value=2.7e+02 Score=21.78 Aligned_cols=62 Identities=5% Similarity=-0.080 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 047408 116 KKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKES 182 (830)
Q Consensus 116 ~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 182 (830)
..+.+.+.+.|+..+ .-.. ..-+.....+.|+++++.++.++...|..++.++.+.+...-|
T Consensus 25 ~~lld~L~~~~vlt~--~~~e---~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 25 SYIMDHMISDGFLTI--SEEE---KVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHTSSCH--HHHH---HHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCCCH--HHHH---HHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 456666777665433 1111 1222456778899999999999988999999999888765433
Done!