BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047411
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
          Length = 376

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 123 IDGSGTIDGRGK--------AWWDISCKINKKEGCVKLAPTVLKFDRCXXXXXXXXXXXX 174
           I G GTIDG+G         +WW+++     K+   +  P +++ ++             
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKK-LKQNTPRLIQINKSKNFTLYNVSLIN 171

Query: 175 SPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225
           SP  HV      G      +I+ P T+ NTDGI   +S N+ I  ++I+ G
Sbjct: 172 SPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATG 222


>pdb|3AIS|A Chain A, Crystal Structure Of A Mutant Beta-Glucosidase In Wheat
           Complexed With Dimboa-Glc
          Length = 565

 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 109 KSKWFDIQ-----SVDSLQIDGSGTIDGRGKAWWDISC 141
           K  WFD       S  + QI+G+   DG+G + WD  C
Sbjct: 70  KRDWFDKDFLFGASTSAYQIEGAWNEDGKGPSTWDHFC 107


>pdb|2DGA|A Chain A, Crystal Structure Of Hexameric Beta-Glucosidase In Wheat
 pdb|3AIQ|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
           With An Aglycone Dimboa
 pdb|3AIR|A Chain A, Crystal Structure Of Beta-Glucosidase In Wheat Complexed
           With 2-Deoxy- 2-Fluoroglucoside And Dinitrophenol
          Length = 565

 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 109 KSKWFDIQ-----SVDSLQIDGSGTIDGRGKAWWDISC 141
           K  WFD       S  + QI+G+   DG+G + WD  C
Sbjct: 70  KRDWFDKDFLFGASTSAYQIEGAWNEDGKGPSTWDHFC 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,442,214
Number of Sequences: 62578
Number of extensions: 233785
Number of successful extensions: 462
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 3
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)