Query 047411
Match_columns 226
No_of_seqs 199 out of 1293
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 10:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02218 polygalacturonase ADP 100.0 7E-52 1.5E-56 369.7 24.8 203 19-226 60-264 (431)
2 PLN02793 Probable polygalactur 100.0 1.2E-51 2.7E-56 369.5 25.9 200 24-226 50-249 (443)
3 PLN02155 polygalacturonase 100.0 1.5E-50 3.2E-55 357.5 24.0 197 20-226 21-217 (394)
4 PLN02188 polygalacturonase/gly 100.0 8.3E-50 1.8E-54 354.1 20.5 217 1-226 1-227 (404)
5 PLN03010 polygalacturonase 100.0 1.2E-48 2.5E-53 346.3 25.0 187 23-226 43-229 (409)
6 PLN03003 Probable polygalactur 100.0 6.1E-48 1.3E-52 344.0 21.3 194 20-226 17-210 (456)
7 COG5434 PGU1 Endopygalactoruna 100.0 2.6E-33 5.7E-38 253.5 18.1 196 22-226 78-309 (542)
8 PF00295 Glyco_hydro_28: Glyco 100.0 7.2E-34 1.6E-38 247.6 11.6 164 54-226 1-164 (326)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 2.6E-24 5.7E-29 189.7 17.3 171 24-225 35-260 (455)
10 PF12708 Pectate_lyase_3: Pect 99.8 5.4E-19 1.2E-23 145.1 15.8 130 26-180 1-138 (225)
11 TIGR03805 beta_helix_1 paralle 99.4 3.9E-12 8.5E-17 110.4 14.5 138 46-224 1-150 (314)
12 PF03718 Glyco_hydro_49: Glyco 99.3 1.3E-10 2.7E-15 104.7 14.6 147 60-226 232-393 (582)
13 PLN03003 Probable polygalactur 98.4 6.1E-06 1.3E-10 74.8 12.6 113 86-225 114-232 (456)
14 PLN02793 Probable polygalactur 98.4 1E-05 2.3E-10 73.4 14.1 113 86-225 144-271 (443)
15 PF07602 DUF1565: Protein of u 98.4 1.8E-05 3.9E-10 66.2 13.9 158 42-223 14-186 (246)
16 PF00295 Glyco_hydro_28: Glyco 98.3 4.4E-06 9.6E-11 73.1 9.1 89 111-225 93-186 (326)
17 PLN02188 polygalacturonase/gly 98.2 4.2E-05 9.2E-10 68.7 14.0 112 86-224 123-248 (404)
18 PLN02218 polygalacturonase ADP 98.2 1.6E-05 3.4E-10 72.0 10.7 113 86-225 157-286 (431)
19 PLN02497 probable pectinestera 98.1 0.00016 3.4E-09 63.2 14.9 80 3-93 4-90 (331)
20 PLN02155 polygalacturonase 98.0 3.8E-05 8.2E-10 68.8 9.9 87 112-224 147-238 (394)
21 PLN02480 Probable pectinestera 97.9 0.00099 2.2E-08 58.5 16.4 50 37-92 55-105 (343)
22 PLN03010 polygalacturonase 97.9 0.00029 6.2E-09 63.4 13.2 86 86-199 140-229 (409)
23 TIGR03805 beta_helix_1 paralle 97.9 0.00014 3.1E-09 63.3 10.4 94 111-223 78-171 (314)
24 COG3866 PelB Pectate lyase [Ca 97.8 0.00054 1.2E-08 58.4 12.6 112 87-226 77-199 (345)
25 PLN02682 pectinesterase family 97.5 0.0074 1.6E-07 53.5 16.4 48 41-93 80-128 (369)
26 COG5434 PGU1 Endopygalactoruna 97.5 0.00044 9.5E-09 64.0 8.6 93 112-225 240-342 (542)
27 PF05048 NosD: Periplasmic cop 97.5 0.0046 1E-07 51.3 14.1 64 155-224 80-143 (236)
28 PLN02176 putative pectinestera 97.4 0.025 5.5E-07 49.7 17.7 48 41-93 49-97 (340)
29 PLN02773 pectinesterase 97.4 0.0078 1.7E-07 52.4 14.3 46 42-92 16-62 (317)
30 PF13229 Beta_helix: Right han 97.3 0.00064 1.4E-08 51.9 6.1 62 156-223 25-86 (158)
31 PLN02665 pectinesterase family 97.2 0.019 4E-07 51.0 15.2 47 41-92 78-125 (366)
32 COG3420 NosD Nitrous oxidase a 97.2 0.027 5.8E-07 49.0 15.4 97 110-222 69-168 (408)
33 PF05048 NosD: Periplasmic cop 97.2 0.0047 1E-07 51.2 10.7 87 110-224 35-121 (236)
34 PF14592 Chondroitinas_B: Chon 97.2 0.0056 1.2E-07 55.0 11.5 153 42-223 3-174 (425)
35 PLN02634 probable pectinestera 97.2 0.022 4.9E-07 50.3 15.1 51 37-93 63-114 (359)
36 PRK10531 acyl-CoA thioesterase 97.2 0.025 5.4E-07 51.0 15.4 42 159-200 202-252 (422)
37 smart00656 Amb_all Amb_all dom 97.1 0.005 1.1E-07 49.8 9.8 70 155-224 32-113 (190)
38 PLN02170 probable pectinestera 97.1 0.017 3.7E-07 53.5 14.2 50 37-92 232-283 (529)
39 PLN02671 pectinesterase 97.1 0.02 4.2E-07 50.7 14.0 47 41-92 69-116 (359)
40 PF12218 End_N_terminal: N ter 97.0 0.0012 2.5E-08 42.8 3.8 38 34-76 1-38 (67)
41 PLN02933 Probable pectinestera 97.0 0.037 8E-07 51.4 14.8 48 41-93 228-276 (530)
42 TIGR03808 RR_plus_rpt_1 twin-a 96.9 0.0059 1.3E-07 55.1 9.2 68 156-223 108-199 (455)
43 PLN03043 Probable pectinestera 96.9 0.032 6.8E-07 52.1 13.7 113 41-200 233-355 (538)
44 PLN02708 Probable pectinestera 96.8 0.04 8.7E-07 51.6 14.3 47 41-93 251-300 (553)
45 COG3866 PelB Pectate lyase [Ca 96.8 0.005 1.1E-07 52.6 7.5 70 156-225 94-166 (345)
46 PLN02304 probable pectinestera 96.8 0.055 1.2E-06 48.2 14.3 48 41-93 85-133 (379)
47 PF01095 Pectinesterase: Pecti 96.8 0.016 3.4E-07 50.2 10.7 47 41-92 10-57 (298)
48 PLN02506 putative pectinestera 96.8 0.038 8.3E-07 51.5 13.8 45 42-92 243-289 (537)
49 PLN02416 probable pectinestera 96.8 0.032 6.8E-07 52.1 13.3 48 41-93 240-288 (541)
50 PLN02484 probable pectinestera 96.8 0.057 1.2E-06 50.9 15.0 48 42-93 283-331 (587)
51 PF01696 Adeno_E1B_55K: Adenov 96.8 0.12 2.5E-06 46.1 16.1 149 28-223 45-198 (386)
52 PF00544 Pec_lyase_C: Pectate 96.8 0.0062 1.3E-07 49.6 7.7 68 157-224 39-127 (200)
53 PLN02201 probable pectinestera 96.8 0.054 1.2E-06 50.3 14.5 51 37-93 213-264 (520)
54 PF13229 Beta_helix: Right han 96.8 0.011 2.5E-07 44.9 8.7 66 154-224 45-111 (158)
55 PLN02713 Probable pectinestera 96.8 0.038 8.2E-07 51.9 13.5 47 41-93 260-311 (566)
56 PLN02995 Probable pectinestera 96.8 0.048 1E-06 50.9 14.1 47 41-93 233-283 (539)
57 PLN02197 pectinesterase 96.6 0.081 1.8E-06 49.9 14.6 48 41-93 285-333 (588)
58 PLN02916 pectinesterase family 96.6 0.091 2E-06 48.5 14.3 47 41-93 197-248 (502)
59 PLN02745 Putative pectinestera 96.5 0.093 2E-06 49.6 14.3 47 42-93 296-343 (596)
60 smart00656 Amb_all Amb_all dom 96.5 0.016 3.4E-07 46.9 7.9 48 178-225 32-81 (190)
61 PLN02990 Probable pectinestera 96.4 0.12 2.6E-06 48.6 14.2 48 41-93 269-317 (572)
62 PLN02488 probable pectinestera 96.4 0.16 3.5E-06 46.8 14.6 48 41-93 207-255 (509)
63 PLN02432 putative pectinestera 96.3 0.61 1.3E-05 40.3 17.6 47 42-93 22-69 (293)
64 PF12541 DUF3737: Protein of u 96.3 0.012 2.7E-07 49.3 6.3 13 110-125 52-64 (277)
65 PRK10123 wcaM putative colanic 96.3 0.13 2.9E-06 44.0 12.5 162 22-223 30-213 (464)
66 PLN02314 pectinesterase 96.3 0.13 2.9E-06 48.5 13.9 47 42-93 289-336 (586)
67 PLN02313 Pectinesterase/pectin 96.2 0.11 2.3E-06 49.2 12.6 48 41-93 285-333 (587)
68 PF12541 DUF3737: Protein of u 96.0 0.023 4.9E-07 47.8 6.6 34 181-222 151-184 (277)
69 PLN02217 probable pectinestera 96.0 0.23 5.1E-06 47.4 13.9 47 41-92 260-307 (670)
70 PF00544 Pec_lyase_C: Pectate 96.0 0.047 1E-06 44.5 8.2 60 163-225 21-96 (200)
71 PLN02301 pectinesterase/pectin 95.9 0.89 1.9E-05 42.7 17.3 47 42-93 247-294 (548)
72 TIGR03804 para_beta_helix para 95.7 0.017 3.7E-07 34.9 3.5 39 180-223 2-40 (44)
73 PLN02468 putative pectinestera 95.3 1.7 3.7E-05 41.0 17.1 46 42-93 269-316 (565)
74 PF03718 Glyco_hydro_49: Glyco 94.1 0.55 1.2E-05 43.5 10.2 134 60-223 256-411 (582)
75 COG4677 PemB Pectin methyleste 94.0 1.4 3.1E-05 38.4 11.7 47 41-92 92-140 (405)
76 TIGR03804 para_beta_helix para 92.9 0.25 5.4E-06 29.7 4.2 40 157-197 2-41 (44)
77 PRK10123 wcaM putative colanic 89.5 4.7 0.0001 34.8 9.8 71 152-222 290-371 (464)
78 PF12708 Pectate_lyase_3: Pect 89.3 4.2 9E-05 32.6 9.4 34 165-198 94-133 (225)
79 PLN02432 putative pectinestera 83.2 22 0.00049 30.7 10.9 44 156-200 88-135 (293)
80 PF07602 DUF1565: Protein of u 82.6 4.3 9.3E-05 34.2 6.1 54 155-213 89-145 (246)
81 PF15240 Pro-rich: Proline-ric 82.4 0.88 1.9E-05 36.2 1.9 25 5-29 1-25 (179)
82 COG3420 NosD Nitrous oxidase a 81.1 8.2 0.00018 34.0 7.4 60 156-221 174-233 (408)
83 PLN02176 putative pectinestera 79.2 36 0.00078 30.1 11.0 44 156-200 116-170 (340)
84 PF14592 Chondroitinas_B: Chon 78.4 11 0.00023 34.4 7.5 70 151-223 212-281 (425)
85 PLN02301 pectinesterase/pectin 78.1 49 0.0011 31.3 12.1 44 156-200 317-365 (548)
86 PF01696 Adeno_E1B_55K: Adenov 71.9 72 0.0016 28.7 11.0 58 160-223 118-176 (386)
87 PLN02468 putative pectinestera 70.9 61 0.0013 30.8 10.9 44 156-200 339-387 (565)
88 smart00722 CASH Domain present 69.3 41 0.0009 24.5 8.1 57 160-219 73-132 (146)
89 PF03211 Pectate_lyase: Pectat 68.9 30 0.00065 28.6 7.4 60 152-219 52-112 (215)
90 PF08480 Disaggr_assoc: Disagg 66.9 25 0.00053 28.4 6.3 60 164-223 3-74 (198)
91 smart00710 PbH1 Parallel beta- 49.3 29 0.00063 16.9 2.9 11 187-197 3-13 (26)
92 smart00722 CASH Domain present 45.8 34 0.00073 25.0 3.9 65 156-222 39-111 (146)
93 PF10162 G8: G8 domain; Inter 45.5 90 0.002 23.1 6.1 33 60-100 12-46 (125)
94 PF05342 Peptidase_M26_N: M26 42.8 36 0.00079 28.7 3.9 17 159-175 206-222 (250)
95 PLN02698 Probable pectinestera 41.4 1.3E+02 0.0027 28.2 7.5 45 155-200 263-312 (497)
96 PF11429 Colicin_D: Colicin D; 41.3 22 0.00048 25.2 2.0 38 30-73 10-48 (92)
97 PF03211 Pectate_lyase: Pectat 38.2 48 0.0011 27.3 3.9 33 185-223 60-92 (215)
98 PF11699 CENP-C_C: Mif2/CENP-C 35.6 41 0.00089 23.4 2.6 17 60-76 58-74 (85)
99 PF06249 EutQ: Ethanolamine ut 28.3 88 0.0019 24.3 3.7 9 60-68 120-128 (152)
100 COG0336 TrmD tRNA-(guanine-N1) 28.1 68 0.0015 26.8 3.1 48 25-73 34-94 (240)
101 TIGR00088 trmD tRNA (guanine-N 27.5 82 0.0018 26.3 3.5 47 25-73 34-93 (233)
102 PRK00026 trmD tRNA (guanine-N( 27.0 86 0.0019 26.4 3.6 49 25-73 34-96 (244)
103 cd07986 LPLAT_ACT14924-like Ly 26.8 64 0.0014 26.0 2.8 27 41-71 83-109 (210)
104 TIGR03119 one_C_fhcD formylmet 26.7 77 0.0017 27.2 3.3 35 37-75 241-279 (287)
105 cd08666 APC10-HECTD3 APC10-lik 26.3 1.3E+02 0.0029 22.8 4.2 40 128-176 24-63 (134)
106 PRK14599 trmD tRNA (guanine-N( 26.1 88 0.0019 25.9 3.4 47 25-73 34-93 (222)
107 PF13956 Ibs_toxin: Toxin Ibs, 26.1 40 0.00086 16.4 0.9 14 4-17 3-16 (19)
108 cd08667 APC10-ZZEF1 APC10/DOC1 25.8 1.3E+02 0.0029 22.7 4.1 37 128-173 19-55 (131)
109 PRK11143 glpQ glycerophosphodi 25.3 1.6E+02 0.0034 26.2 5.2 36 16-51 17-52 (355)
110 PF07172 GRP: Glycine rich pro 24.8 58 0.0012 23.2 1.9 9 1-9 1-9 (95)
111 KOG2107 Uncharacterized conser 24.3 53 0.0012 25.9 1.8 12 60-72 123-134 (179)
112 PF02741 FTR_C: FTR, proximal 24.1 79 0.0017 24.4 2.6 27 41-71 110-136 (150)
113 PHA00672 hypothetical protein 24.0 1.5E+02 0.0033 22.4 4.0 14 62-76 51-64 (152)
114 PF04272 Phospholamban: Phosph 23.4 77 0.0017 19.3 2.0 14 4-17 34-47 (52)
115 TIGR01294 P_lamban phospholamb 22.8 79 0.0017 19.2 1.9 14 4-17 34-47 (52)
116 PRK15018 1-acyl-sn-glycerol-3- 22.6 78 0.0017 26.4 2.6 28 41-71 123-150 (245)
117 cd08665 APC10-CUL7 APC10-like 22.5 1.8E+02 0.0038 22.1 4.2 37 128-173 19-55 (131)
118 PRK13240 pbsY photosystem II p 22.2 74 0.0016 18.9 1.7 13 1-13 1-13 (40)
119 PF02373 JmjC: JmjC domain, hy 22.0 66 0.0014 22.6 1.9 13 60-73 88-100 (114)
120 KOG3293 Small nuclear ribonucl 21.7 1.4E+02 0.003 22.3 3.4 27 172-198 19-48 (134)
121 PF08105 Antimicrobial10: Metc 21.2 1.1E+02 0.0023 19.0 2.3 19 1-19 1-19 (52)
122 cd07990 LPLAT_LCLAT1-like Lyso 20.8 92 0.002 24.6 2.6 31 40-72 85-116 (193)
123 PRK13301 putative L-aspartate 20.8 1.1E+02 0.0024 26.1 3.2 37 24-68 86-122 (267)
124 PF14201 DUF4318: Domain of un 20.6 2.8E+02 0.0062 18.7 4.8 17 42-58 16-32 (74)
125 PF14262 DUF4353: Domain of un 20.4 5.4E+02 0.012 21.9 7.5 32 60-93 6-44 (264)
126 PF08118 MDM31_MDM32: Yeast mi 20.3 4E+02 0.0088 25.0 6.9 17 118-134 181-198 (503)
127 PF06298 PsbY: Photosystem II 20.0 91 0.002 18.1 1.7 12 1-12 1-12 (36)
No 1
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=7e-52 Score=369.67 Aligned_cols=203 Identities=38% Similarity=0.764 Sum_probs=185.0
Q ss_pred hcccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEee
Q 047411 19 SIRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAP 98 (226)
Q Consensus 19 ~~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~ 98 (226)
.+.+..++++|+||||++||.+|||+|||+||+++|+..| +++|+||+|++|+++++.|+||||+ +++|+++|+|+++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~G-gg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s 137 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNG-AVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSAS 137 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCC-CcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeC
Confidence 4445689999999999999999999999999977898877 8899999996699999999999999 9999999999999
Q ss_pred CCCCCcCCCCCcceEEEeCccceEEEec--eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC
Q 047411 99 NGPNEWKEDDKSKWFDIQSVDSLQIDGS--GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP 176 (226)
Q Consensus 99 ~~~~~~~~~~~~~~i~~~~~~nv~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~ 176 (226)
+++.+|+ ....||.+.+++||+|+|. |+|||+|+.||....+.++..++ ..||+++.|.+|+|++|+|++++|||
T Consensus 138 ~d~~~y~--~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~-~~rP~~i~f~~~~nv~I~gitl~nSp 214 (431)
T PLN02218 138 QKRSDYK--DISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPC-TKAPTALTFYNSKSLIVKNLRVRNAQ 214 (431)
T ss_pred CChhhcc--ccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCcc-CcCCEEEEEEccccEEEeCeEEEcCC
Confidence 9999886 3357999999999999996 99999999999854432233344 57999999999999999999999999
Q ss_pred ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411 177 QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226 (226)
Q Consensus 177 ~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD 226 (226)
+|++++..|+||+|++++|.+|.++|||||||+++|+||+|+||+|++||
T Consensus 215 ~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGD 264 (431)
T PLN02218 215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGD 264 (431)
T ss_pred CEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.2e-51 Score=369.52 Aligned_cols=200 Identities=45% Similarity=0.886 Sum_probs=183.1
Q ss_pred cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCC
Q 047411 24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNE 103 (226)
Q Consensus 24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~ 103 (226)
.++++|+||||++||.+|||+|||+||+++|+..| |++|+||+|++|+++++.|.||||| +++|+++|+|+++.++.+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~g-gg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~ 127 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKV-KTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDV 127 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCC-CCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHH
Confidence 46899999999999999999999999976898877 8999999995599999999999999 999999999999999999
Q ss_pred cCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEe
Q 047411 104 WKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVM 183 (226)
Q Consensus 104 ~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~ 183 (226)
|+..+..+||++.+++|++|+|.|+|||+|+.||....+.+...++ ..||+++.|.+|+|++|+|++++|||+|++++.
T Consensus 128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~-~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~ 206 (443)
T PLN02793 128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPC-RHAPTAITFHKCKDLRVENLNVIDSQQMHIAFT 206 (443)
T ss_pred ccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCc-cCCceEEEEEeeccEEEECeEEEcCCCeEEEEE
Confidence 9865567899999999999999999999999999753321112233 469999999999999999999999999999999
Q ss_pred CeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411 184 GCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226 (226)
Q Consensus 184 ~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD 226 (226)
.|++|+|++++|.+|..+|||||||+++|+||+|+||+|++||
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD 249 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD 249 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC
Confidence 9999999999999998899999999999999999999999998
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.5e-50 Score=357.51 Aligned_cols=197 Identities=34% Similarity=0.692 Sum_probs=178.3
Q ss_pred cccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeC
Q 047411 20 IRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPN 99 (226)
Q Consensus 20 ~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~ 99 (226)
++..+++|||+||||++||++|||+|||+||+++|+..| |++|+||+| +|++++|.|.||||| +++|+++|+|++++
T Consensus 21 ~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~g-Gg~v~vP~G-~yl~g~i~l~gpcks-nv~l~l~G~l~~~~ 97 (394)
T PLN02155 21 SSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAS-SATVVVPTG-TFLLKVITFGGPCKS-KITFQVAGTVVAPE 97 (394)
T ss_pred cccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCC-CeEEEECCC-cEEEEEEEEcccCCC-CceEEEeeEEECcc
Confidence 345578999999999999999999999999976888877 899999999 999999999999999 99999999999888
Q ss_pred CCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceE
Q 047411 100 GPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH 179 (226)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~ 179 (226)
++..|.. ...|+.+.++++++|+| |+|||+|+.||....+ ..++ ..+|+++.|.+|++++|++++++|||+|+
T Consensus 98 d~~~~~~--~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~---~~~~-~~~p~~i~~~~~~nv~i~gitl~nSp~w~ 170 (394)
T PLN02155 98 DYRTFGN--SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS---GQNC-PPGVRSISFNSAKDVIISGVKSMNSQVSH 170 (394)
T ss_pred ccccccc--cceeEEEECcCCCEEEc-cEEecCceeEEEcccC---CCCC-CCcccceeEEEeeeEEEECeEEEcCCCeE
Confidence 8776752 24689999999999999 9999999999973221 1222 45788999999999999999999999999
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411 180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226 (226)
Q Consensus 180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD 226 (226)
+++..|++++|++++|.+|.++|||||||+++|+||+|+||+|++||
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gD 217 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGD 217 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCC
Confidence 99999999999999999999899999999999999999999999998
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=8.3e-50 Score=354.06 Aligned_cols=217 Identities=34% Similarity=0.646 Sum_probs=184.7
Q ss_pred CCchhhHHHHHHHHHhhhh-cc---------cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCe
Q 047411 1 MDADLCAILYFLYLISTAS-IR---------INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKT 70 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~t 70 (226)
|..||+++|..++++..+- .+ +..+++||+||||++||.+|||+|||+||+++|++.| |++|+||+| +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~G-gg~V~vP~G-~ 78 (404)
T PLN02188 1 MEFRLLLLLVVVFIVNALVLSSAGGGSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTG-AVTLLIPPG-T 78 (404)
T ss_pred CcceEeeeeeeeeeecceeEeccCCCcccccCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCC-CeEEEECCC-e
Confidence 6778877776555443321 11 1246899999999999999999999999977898877 889999999 9
Q ss_pred EEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcc
Q 047411 71 FLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCV 150 (226)
Q Consensus 71 Y~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~ 150 (226)
|+++++.|+||||+ ...|.+ +|++++++++|+. ...|+.+..++||+|+|.|+|||+|+.||...... ...++
T Consensus 79 yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y~~--~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~-~~~~~- 151 (404)
T PLN02188 79 YYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRYGS--GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCP-IRKDC- 151 (404)
T ss_pred EEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHCCC--ccceEEEeceeeEEEEeeEEEeCCCcccccccccc-cCCCC-
Confidence 99999999999976 444544 8999999999973 24688888899999999999999999999732111 11233
Q ss_pred cCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411 151 KLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226 (226)
Q Consensus 151 ~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD 226 (226)
..||+++.|.+|+|++|+|++++|||+|++++..|++++|++++|.+|.++|||||||+++|+||+|+||+|++||
T Consensus 152 ~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD 227 (404)
T PLN02188 152 KLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD 227 (404)
T ss_pred CcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC
Confidence 5799999999999999999999999999999999999999999999999899999999999999999999999998
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.2e-48 Score=346.29 Aligned_cols=187 Identities=45% Similarity=0.898 Sum_probs=171.9
Q ss_pred ccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCC
Q 047411 23 NADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPN 102 (226)
Q Consensus 23 ~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~ 102 (226)
.+++|||+||||++||++|||+|||+||+++|+..|.+++|+||+|++|+++|+.|++|||+.+++|+++|+|++++++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 57899999999999999999999999997677642102699999996799999999999985489999999999999999
Q ss_pred CcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEE
Q 047411 103 EWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV 182 (226)
Q Consensus 103 ~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~ 182 (226)
+|+......|+.+.+++|++|+|.|+|||+|+.||. ++.|.+|+|++|+|++++|||+|++++
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-----------------~l~~~~~~nv~v~gitl~nsp~~~i~i 185 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-----------------ALHISKCDNLTINGITSIDSPKNHISI 185 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc-----------------eEEEEeecCeEEeeeEEEcCCceEEEE
Confidence 997444457999999999999999999999999995 589999999999999999999999999
Q ss_pred eCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411 183 MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226 (226)
Q Consensus 183 ~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD 226 (226)
..|++++|++++|.+|..++||||||+.+|++|+|+||+|++||
T Consensus 186 ~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gD 229 (409)
T PLN03010 186 KTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGD 229 (409)
T ss_pred eccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCC
Confidence 99999999999999998899999999999999999999999998
No 6
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=6.1e-48 Score=344.01 Aligned_cols=194 Identities=42% Similarity=0.860 Sum_probs=176.1
Q ss_pred cccccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeC
Q 047411 20 IRINADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPN 99 (226)
Q Consensus 20 ~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~ 99 (226)
.-.+.+++||++|||++||.+|||+|||+||++||++.+ |++|+||+|++|+++++.|+||||++.++++++|+++++.
T Consensus 17 ~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~g-gg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~ 95 (456)
T PLN03003 17 IFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTG-DGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPS 95 (456)
T ss_pred eeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccC-CCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCc
Confidence 345678999999999999999999999999987798777 8999999996688999999999987448888899999865
Q ss_pred CCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceE
Q 047411 100 GPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTH 179 (226)
Q Consensus 100 ~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~ 179 (226)
. ..|.+. ...||++.++++++|+|.|+|||+|+.||.. + ..||+++.|.+|+|++|+|++++|||+||
T Consensus 96 ~-~~w~~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~--~--------~~rP~~l~f~~~~nv~I~gitl~NSp~w~ 163 (456)
T PLN03003 96 K-GNWKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEH--K--------GSRPTALKFRSCNNLRLSGLTHLDSPMAH 163 (456)
T ss_pred c-ccccCC-CcceEEEEcccceEEeccceEeCCchhhhhc--c--------cCCceEEEEEecCCcEEeCeEEecCCcEE
Confidence 4 457632 3569999999999999999999999999973 1 47999999999999999999999999999
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecCC
Q 047411 180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGT 226 (226)
Q Consensus 180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~gD 226 (226)
+++..|++++|++++|.+|..+|||||||+++|+||+|+||+|++||
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGD 210 (456)
T PLN03003 164 IHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGD 210 (456)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCC
Confidence 99999999999999999998899999999999999999999999998
No 7
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-33 Score=253.51 Aligned_cols=196 Identities=29% Similarity=0.540 Sum_probs=160.5
Q ss_pred cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe-e-EEEeeC
Q 047411 22 INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS-G-SIIAPN 99 (226)
Q Consensus 22 ~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~-g-~l~~~~ 99 (226)
+....++|.+|||++||.+++++|||+|| ++|++.+ |++|+||+| +|+.++|+| || +++|+++ | +|+++.
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca~a~-Gg~V~lPaG-tylsg~l~L----KS-~~~L~l~egatl~~~~ 149 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAI-DACASAG-GGTVLLPAG-TYLSGPLFL----KS-NVTLHLAEGATLLASS 149 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHH-Hhhhhhc-CceEEECCc-eeEeeeEEE----ec-ccEEEecCCceeeCCC
Confidence 34678999999999999999999999999 5788777 999999999 999999999 79 9999996 5 999999
Q ss_pred CCCCcCC------CCC-----------------------cceEEEeCccceE-EEeceEEeCCC----cccccccccccc
Q 047411 100 GPNEWKE------DDK-----------------------SKWFDIQSVDSLQ-IDGSGTIDGRG----KAWWDISCKINK 145 (226)
Q Consensus 100 ~~~~~~~------~~~-----------------------~~~i~~~~~~nv~-I~G~G~idG~G----~~~~~~~~~~~~ 145 (226)
++.+|+. .+. ...+.....+|.. |.|.|+++|++ ..||...+....
T Consensus 150 ~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~ 229 (542)
T COG5434 150 NPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVET 229 (542)
T ss_pred ChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhh
Confidence 9988883 000 1222223344544 88889999975 226654331001
Q ss_pred cCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEecC
Q 047411 146 KEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNG 225 (226)
Q Consensus 146 ~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~g 225 (226)
.-.+...||..+.+..|+||+++|++|.|+|.|++++..|++++++|++|.++... |+|||++.+|+||.|++|+|++|
T Consensus 230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg 308 (542)
T COG5434 230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308 (542)
T ss_pred cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence 11100259999999999999999999999999999999999999999999998655 99999999999999999999999
Q ss_pred C
Q 047411 226 T 226 (226)
Q Consensus 226 D 226 (226)
|
T Consensus 309 D 309 (542)
T COG5434 309 D 309 (542)
T ss_pred C
Confidence 8
No 8
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=7.2e-34 Score=247.60 Aligned_cols=164 Identities=35% Similarity=0.650 Sum_probs=136.9
Q ss_pred cccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCC
Q 047411 54 CSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRG 133 (226)
Q Consensus 54 ~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G 133 (226)
|++.+ +++|+||+| +|+++++.|++++++ +++++|+|++.++.....|+ + .++|++.+++|++|+|.|+|||+|
T Consensus 1 C~~~~-~~~v~vP~g-~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~--~-~~~i~~~~~~ni~i~G~G~IDG~G 74 (326)
T PF00295_consen 1 CSSIG-GGTVVVPAG-TYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGP--N-SALIYAENAENITITGKGTIDGNG 74 (326)
T ss_dssp HSEEE-EESEEESTS-TEEEEETSEETECET-TCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--G
T ss_pred CcCCc-CCEEEECCC-CeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCC--c-cEEEEEEceEEEEecCCceEcCch
Confidence 44444 678999999 999999999655456 89999999999875444443 2 689999999999999999999999
Q ss_pred cccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCee
Q 047411 134 KAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASS 213 (226)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~ 213 (226)
+.||...... ..+. ..||+++.|.+|++++|+|++++|||+|++++..|++++|++++|.++...+|+||||+++|+
T Consensus 75 ~~w~~~~~~~--~~~~-~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~ 151 (326)
T PF00295_consen 75 QAWWDGSGDA--NNNG-QRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSK 151 (326)
T ss_dssp GGTCSSCTTH--CCSS-SSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEE
T ss_pred hhhhcccccc--cccc-ccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeee
Confidence 9999854321 1222 689999999999999999999999999999999999999999999998878999999999999
Q ss_pred cEEEEeeEEecCC
Q 047411 214 NVYIHNAHISNGT 226 (226)
Q Consensus 214 ~v~I~n~~i~~gD 226 (226)
||+|+||+|++||
T Consensus 152 nv~I~n~~i~~gD 164 (326)
T PF00295_consen 152 NVTIENCFIDNGD 164 (326)
T ss_dssp EEEEESEEEESSS
T ss_pred EEEEEEeeccccc
Confidence 9999999999998
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.92 E-value=2.6e-24 Score=189.74 Aligned_cols=171 Identities=15% Similarity=0.255 Sum_probs=137.4
Q ss_pred cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe-eEEEeeCCCC
Q 047411 24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS-GSIIAPNGPN 102 (226)
Q Consensus 24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~-g~l~~~~~~~ 102 (226)
.+.+++++|||++||.+|+|+|||+||+ +|++ + +++|.+|+| +|+.+++.| ++ +++|+.+ +....
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAId-aAa~-g-G~tV~Lp~G-~Y~~G~L~L----~s-pltL~G~~gAt~~----- 100 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAID-EAAR-A-QTPLALPPG-VYRTGPLRL----PS-GAQLIGVRGATRL----- 100 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHH-Hhhc-C-CCEEEECCC-ceecccEEE----CC-CcEEEecCCcEEE-----
Confidence 5568999999999999999999999996 4554 3 678999999 999999999 56 9999887 33210
Q ss_pred CcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEE
Q 047411 103 EWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV 182 (226)
Q Consensus 103 ~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~ 182 (226)
.+. ....++...++++|+|+|. +|+|.|..| ..||.++.+..|++++|++++|++++.|++.+
T Consensus 101 vId--G~~~lIiai~A~nVTIsGL-tIdGsG~dl--------------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L 163 (455)
T TIGR03808 101 VFT--GGPSLLSSEGADGIGLSGL-TLDGGGIPL--------------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWL 163 (455)
T ss_pred EEc--CCceEEEEecCCCeEEEee-EEEeCCCcc--------------cCCCCEEEEccCCceEEEeeEEEcCCcceEEE
Confidence 011 1145665667899999997 999999765 34778999999999999999999999999999
Q ss_pred eCee----------------------eEEEEeEEEECCCC--------------------------------CCCCCeEE
Q 047411 183 MGCI----------------------GVEFGFLSIQAPGT--------------------------------SPNTDGIH 208 (226)
Q Consensus 183 ~~s~----------------------~v~i~~~~i~~~~~--------------------------------~~ntDGi~ 208 (226)
..|+ ++.|++.+|....+ ....+||+
T Consensus 164 ~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~ 243 (455)
T TIGR03808 164 ETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAIN 243 (455)
T ss_pred EcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEE
Confidence 9999 77777777766544 34577888
Q ss_pred ecCeecEEEEeeEEecC
Q 047411 209 IQASSNVYIHNAHISNG 225 (226)
Q Consensus 209 ~~~s~~v~I~n~~i~~g 225 (226)
++.+.+++|++++|+..
T Consensus 244 ~~~a~~v~V~gN~I~~~ 260 (455)
T TIGR03808 244 AFRAGNVIVRGNRIRNC 260 (455)
T ss_pred EEccCCeEEECCEEecc
Confidence 88888888888888754
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.82 E-value=5.4e-19 Score=145.14 Aligned_cols=130 Identities=25% Similarity=0.376 Sum_probs=76.2
Q ss_pred eEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe-eeeeeCCCcCccEEEEEee---E-EEeeCC
Q 047411 26 EFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH-PITFTGPCKSSDITIMLSG---S-IIAPNG 100 (226)
Q Consensus 26 ~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-~l~l~~~~ks~~v~l~~~g---~-l~~~~~ 100 (226)
.+||+||||+|||.+|||+|||+||++ ++..+ +++|+||+| +|+++ ++.+ ++ +++|+++| + +.....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~-g~~v~~P~G-~Y~i~~~l~~----~s-~v~l~G~g~~~~~~~~~~~ 72 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAG-GGVVYFPPG-TYRISGTLII----PS-NVTLRGAGGNSTILFLSGS 72 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTT-SEEEEE-SE-EEEESS-EEE-----T-TEEEEESSTTTEEEEECTT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCC-CeEEEEcCc-EEEEeCCeEc----CC-CeEEEccCCCeeEEEecCc
Confidence 379999999999999999999999944 44445 899999999 99996 6888 47 99999974 3 332222
Q ss_pred CCCcCCCCCcceEEEeC-ccc--eEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc
Q 047411 101 PNEWKEDDKSKWFDIQS-VDS--LQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ 177 (226)
Q Consensus 101 ~~~~~~~~~~~~i~~~~-~~n--v~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~ 177 (226)
...+.. ......+.. ..+ +.|++ -+|+|++... ......+.+..++++.|+++++.|+..
T Consensus 73 ~~~~~~--~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~--------------~~~~~~i~~~~~~~~~i~nv~~~~~~~ 135 (225)
T PF12708_consen 73 GDSFSV--VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDP--------------NNNNNGIRFNSSQNVSISNVRIENSGG 135 (225)
T ss_dssp TSTSCC--EEEEEECCSCSCCEEEEEEE-EEEEETCGCE---------------SCEEEEEETTEEEEEEEEEEEES-SS
T ss_pred cccccc--ccceeeeecCCCCceEEEEe-eEEEcccccC--------------CCCceEEEEEeCCeEEEEeEEEEccCc
Confidence 222210 001111111 112 22444 3555554321 112356777778888888888777643
Q ss_pred eEE
Q 047411 178 THV 180 (226)
Q Consensus 178 ~~i 180 (226)
.++
T Consensus 136 ~~i 138 (225)
T PF12708_consen 136 DGI 138 (225)
T ss_dssp -SE
T ss_pred cEE
Confidence 333
No 11
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.43 E-value=3.9e-12 Score=110.44 Aligned_cols=138 Identities=12% Similarity=0.205 Sum_probs=101.1
Q ss_pred HHHHHHHhcccCCCCCEEEecCCCeEEE-eeeeeeCCCcCccEEEEEee---E-EEeeCCCCCcCCCCCcceEEEeCccc
Q 047411 46 FIKAWNNTCSATAKSPTMVIPKGKTFLV-HPITFTGPCKSSDITIMLSG---S-IIAPNGPNEWKEDDKSKWFDIQSVDS 120 (226)
Q Consensus 46 iq~Ai~~a~~~~g~g~~v~iP~G~tY~~-~~l~l~~~~ks~~v~l~~~g---~-l~~~~~~~~~~~~~~~~~i~~~~~~n 120 (226)
||+|++ ++++ |.+|+||+| +|.+ +++.+. |+ +++|+.+| + |.+.... .....+.+. +++
T Consensus 1 iQ~Ai~-~A~~---GDtI~l~~G-~Y~~~~~l~I~---~~-~Iti~G~g~~~tvid~~~~~------~~~~~i~v~-a~~ 64 (314)
T TIGR03805 1 LQEALI-AAQP---GDTIVLPEG-VFQFDRTLSLD---AD-GVTIRGAGMDETILDFSGQV------GGAEGLLVT-SDD 64 (314)
T ss_pred CHhHHh-hCCC---CCEEEECCC-EEEcceeEEEe---CC-CeEEEecCCCccEEecccCC------CCCceEEEE-eCC
Confidence 699994 5565 789999999 9997 688886 45 89998764 3 3222111 013345554 589
Q ss_pred eEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEe-------CCCceEEEEeCeeeEEEEeE
Q 047411 121 LQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFI-------NSPQTHVTVMGCIGVEFGFL 193 (226)
Q Consensus 121 v~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~-------ns~~~~i~~~~s~~v~i~~~ 193 (226)
|+|+|. +|.+.+ ..++.+..|++++|+++++. ....+++.+..|++++|+++
T Consensus 65 VtI~~l-tI~~~~--------------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n 123 (314)
T TIGR03805 65 VTLSDL-AVENTK--------------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDS 123 (314)
T ss_pred eEEEee-EEEcCC--------------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECC
Confidence 999884 332211 12677889999999999997 13468899999999999999
Q ss_pred EEECCCCCCCCCeEEecCeecEEEEeeEEec
Q 047411 194 SIQAPGTSPNTDGIHIQASSNVYIHNAHISN 224 (226)
Q Consensus 194 ~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~ 224 (226)
++... ..+||-+..|+++.|++|+++.
T Consensus 124 ~i~g~----~d~GIyv~~s~~~~v~nN~~~~ 150 (314)
T TIGR03805 124 YVRGA----SDAGIYVGQSQNIVVRNNVAEE 150 (314)
T ss_pred EEECC----CcccEEECCCCCeEEECCEEcc
Confidence 99873 3359999999999999998864
No 12
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.27 E-value=1.3e-10 Score=104.71 Aligned_cols=147 Identities=14% Similarity=0.210 Sum_probs=84.8
Q ss_pred CCEEEecCCCeEEEee---eeeeCCCcCccEEEEEe-eEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcc
Q 047411 60 SPTMVIPKGKTFLVHP---ITFTGPCKSSDITIMLS-GSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKA 135 (226)
Q Consensus 60 g~~v~iP~G~tY~~~~---l~l~~~~ks~~v~l~~~-g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~ 135 (226)
-.+|||+|| +|.++. +.|+ +..-+++++ |.+.. +++......+|+.|.|.|++.|.-..
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L~----sn~~~VYlApGAyVk------------GAf~~~~~~~nv~i~G~GVLSGe~Yv 294 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRLP----SNTKWVYLAPGAYVK------------GAFEYTDTQQNVKITGRGVLSGEQYV 294 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEE------------S-EEE---SSEEEEESSSEEE-TTS-
T ss_pred cceEEeCCc-eEEeCCCccEEEC----CCccEEEEcCCcEEE------------EEEEEccCCceEEEEeeEEEcCccee
Confidence 459999999 999974 7784 413588887 65442 44444457899999999999998777
Q ss_pred cccccccccc----cCCcccCCceEEEEe---ecCcEEEeeeEEeCCCceEEEEeCee----eEEEEeEEEECCCCCCCC
Q 047411 136 WWDISCKINK----KEGCVKLAPTVLKFD---RCNNLRMNNMNFINSPQTHVTVMGCI----GVEFGFLSIQAPGTSPNT 204 (226)
Q Consensus 136 ~~~~~~~~~~----~~~~~~~rp~~i~~~---~~~nv~i~~i~i~ns~~~~i~~~~s~----~v~i~~~~i~~~~~~~nt 204 (226)
|.....+.-. ..++....-+++.+. .++++.++|++|.++|+|.+.+.+.+ ++.|+|.++..... .++
T Consensus 295 y~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qt 373 (582)
T PF03718_consen 295 YEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQT 373 (582)
T ss_dssp TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT-
T ss_pred EeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-ecc
Confidence 6432111000 001101223566644 45599999999999999999998655 58999999998653 799
Q ss_pred CeEEecCeecEEEEeeEEecCC
Q 047411 205 DGIHIQASSNVYIHNAHISNGT 226 (226)
Q Consensus 205 DGi~~~~s~~v~I~n~~i~~gD 226 (226)
|||.+.. +-+|+||++++-|
T Consensus 374 DGi~ly~--nS~i~dcF~h~nD 393 (582)
T PF03718_consen 374 DGIELYP--NSTIRDCFIHVND 393 (582)
T ss_dssp ---B--T--T-EEEEEEEEESS
T ss_pred CCccccC--CCeeeeeEEEecC
Confidence 9999985 5677899999766
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.38 E-value=6.1e-06 Score=74.80 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=78.3
Q ss_pred cEEEEEeeEEEeeCCCCCcCCCCCcc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCc
Q 047411 86 DITIMLSGSIIAPNGPNEWKEDDKSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNN 164 (226)
Q Consensus 86 ~v~l~~~g~l~~~~~~~~~~~~~~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~n 164 (226)
++++...|+|...- ..-|.....+| ++.+.+++|++|+|- ++- .... .-+.+.+|++
T Consensus 114 ~i~I~G~GtIDGqG-~~wW~~~~~rP~~l~f~~~~nv~I~gi-tl~--NSp~------------------w~i~i~~c~n 171 (456)
T PLN03003 114 GLVIEGDGEINGQG-SSWWEHKGSRPTALKFRSCNNLRLSGL-THL--DSPM------------------AHIHISECNY 171 (456)
T ss_pred ceEEeccceEeCCc-hhhhhcccCCceEEEEEecCCcEEeCe-EEe--cCCc------------------EEEEEecccc
Confidence 88888888886422 12343222233 788999999999983 221 1111 2478889999
Q ss_pred EEEeeeEEeCCC---c-eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEecC
Q 047411 165 LRMNNMNFINSP---Q-THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISNG 225 (226)
Q Consensus 165 v~i~~i~i~ns~---~-~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~g 225 (226)
++|+++++.++. . -++++..|+||+|+|+.|.+ ..|.|-+- +|+||+|+||....|
T Consensus 172 V~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~G 232 (456)
T PLN03003 172 VTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPG 232 (456)
T ss_pred EEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECC
Confidence 999999999742 2 35899999999999999997 35777664 366777777776543
No 14
>PLN02793 Probable polygalacturonase
Probab=98.37 E-value=1e-05 Score=73.41 Aligned_cols=113 Identities=17% Similarity=0.320 Sum_probs=79.2
Q ss_pred cEEEEEeeEEEeeCCCCCcCC------CC---Ccc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCce
Q 047411 86 DITIMLSGSIIAPNGPNEWKE------DD---KSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPT 155 (226)
Q Consensus 86 ~v~l~~~g~l~~~~~~~~~~~------~~---~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~ 155 (226)
++++...|+|...- ..-|.. .+ .+| ++.+.+++|++|+|--..+.. . .
T Consensus 144 ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~------------------~ 201 (443)
T PLN02793 144 HLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---Q------------------M 201 (443)
T ss_pred eEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---C------------------e
Confidence 78888778886422 112321 01 123 789999999999984222111 1 2
Q ss_pred EEEEeecCcEEEeeeEEeCCC----ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEecC
Q 047411 156 VLKFDRCNNLRMNNMNFINSP----QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISNG 225 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~----~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~g 225 (226)
-+.+.+|+|++|+++++.++. .-++++..|+||+|+|+.|.+ ..|.|-+- +|+||+|+||....|
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~G 271 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPG 271 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCC
Confidence 377889999999999999853 236999999999999999997 45777774 578888888876543
No 15
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.35 E-value=1.8e-05 Score=66.24 Aligned_cols=158 Identities=18% Similarity=0.121 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhcccCCCCCEEEecCCCeEEEe-----eeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEe
Q 047411 42 DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVH-----PITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQ 116 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~-----~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~ 116 (226)
--.-|++|+ +++++ |.+|++-+| +|.-. ||.+ |+ .++|+.+..-+...+.- +.+...++.+.+.
T Consensus 14 P~~Ti~~A~-~~a~~---g~~i~l~~G-tY~~~~ge~fPi~i----~~-gVtl~G~~~~kG~~~il-~~g~~~~~~I~g~ 82 (246)
T PF07602_consen 14 PFKTITKAL-QAAQP---GDTIQLAPG-TYSEATGETFPIII----KP-GVTLIGNESNKGQIDIL-ITGGGTGPTISGG 82 (246)
T ss_pred CHHHHHHHH-HhCCC---CCEEEECCc-eeccccCCcccEEe----cC-CeEEeecccCCCcceEE-ecCCceEEeEecc
Confidence 346799999 45565 789999999 99863 6777 46 88887652111000000 0000000111111
Q ss_pred C----ccceEEEec--eEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCee-eEE
Q 047411 117 S----VDSLQIDGS--GTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCI-GVE 189 (226)
Q Consensus 117 ~----~~nv~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~-~v~ 189 (226)
+ .++++|.+. .+|.|= ..- +.+ ..|+..++++.+ +.+|++.+|.+...-++.+.... +-.
T Consensus 83 ~~~~~~qn~tI~~~~~~~i~Gv--tIt--------N~n--~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~ 149 (246)
T PF07602_consen 83 GPDLSGQNVTIILANNATISGV--TIT--------NPN--IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPG 149 (246)
T ss_pred CccccceeEEEEecCCCEEEEE--EEE--------cCC--CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCc
Confidence 1 123333221 111110 000 000 236667777655 88888888888766666665553 333
Q ss_pred EEeEEEECCCCCCCCCeEEecCeecE---EEEeeEEe
Q 047411 190 FGFLSIQAPGTSPNTDGIHIQASSNV---YIHNAHIS 223 (226)
Q Consensus 190 i~~~~i~~~~~~~ntDGi~~~~s~~v---~I~n~~i~ 223 (226)
+.+..|.......+..||.+..+..- +|+|+.|+
T Consensus 150 i~~~vI~GN~~~~~~~Gi~i~~~~~~~~n~I~NN~I~ 186 (246)
T PF07602_consen 150 INGNVISGNSIYFNKTGISISDNAAPVENKIENNIIE 186 (246)
T ss_pred ccceEeecceEEecCcCeEEEcccCCccceeeccEEE
Confidence 33333333211123347777654444 67777765
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.28 E-value=4.4e-06 Score=73.10 Aligned_cols=89 Identities=21% Similarity=0.461 Sum_probs=71.0
Q ss_pred ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCce----EEEEeCee
Q 047411 111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT----HVTVMGCI 186 (226)
Q Consensus 111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~----~i~~~~s~ 186 (226)
.++.+.+++|++|+|- ++- +. ..| .+.+.+|+|++|+++++.+++.. ++.+..|+
T Consensus 93 ~~i~~~~~~~~~i~~i-~~~-ns-p~w------------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~ 151 (326)
T PF00295_consen 93 RLIRFNNCKNVTIEGI-TIR-NS-PFW------------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSSK 151 (326)
T ss_dssp ESEEEEEEEEEEEESE-EEE-S--SSE------------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEE
T ss_pred ceeeeeeecceEEEee-Eec-CC-Cee------------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEeee
Confidence 4789999999999983 221 11 112 37888999999999999987653 69999999
Q ss_pred eEEEEeEEEECCCCCCCCCeEEecCee-cEEEEeeEEecC
Q 047411 187 GVEFGFLSIQAPGTSPNTDGIHIQASS-NVYIHNAHISNG 225 (226)
Q Consensus 187 ~v~i~~~~i~~~~~~~ntDGi~~~~s~-~v~I~n~~i~~g 225 (226)
||+|+|+.|.+ ..|.|-+-+.+ ||+|+||++..|
T Consensus 152 nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~g 186 (326)
T PF00295_consen 152 NVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGG 186 (326)
T ss_dssp EEEEESEEEES-----SSESEEESSEECEEEEESEEEESS
T ss_pred EEEEEEeeccc-----ccCcccccccccceEEEeEEEecc
Confidence 99999999997 46888887655 999999998765
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.21 E-value=4.2e-05 Score=68.69 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=76.7
Q ss_pred cEEEEEeeEEEeeCCCCCcCC------C--CCcc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceE
Q 047411 86 DITIMLSGSIIAPNGPNEWKE------D--DKSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTV 156 (226)
Q Consensus 86 ~v~l~~~g~l~~~~~~~~~~~------~--~~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~ 156 (226)
+++|...|+|...-. .-|.. . ..+| ++.+.+++|++|+|- ++. -... ..
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gi-tl~--nSp~------------------w~ 180 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGI-TSV--NSKF------------------FH 180 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCe-EEE--cCCC------------------eE
Confidence 788888888875332 22321 0 1134 788888999999982 221 1112 24
Q ss_pred EEEeecCcEEEeeeEEeCCCc----eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEec
Q 047411 157 LKFDRCNNLRMNNMNFINSPQ----THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISN 224 (226)
Q Consensus 157 i~~~~~~nv~i~~i~i~ns~~----~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~ 224 (226)
+.+..|++++|+++++.++.. -++.+..|++|+|+|++|.+ ..|+|-+- +++||+|+|+....
T Consensus 181 i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~ 248 (404)
T PLN02188 181 IALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGP 248 (404)
T ss_pred EEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcC
Confidence 888899999999999986431 35899999999999999997 34666663 45677777766543
No 18
>PLN02218 polygalacturonase ADPG
Probab=98.18 E-value=1.6e-05 Score=72.02 Aligned_cols=113 Identities=16% Similarity=0.307 Sum_probs=79.5
Q ss_pred cEEEEEe--eEEEeeCCCCCcCCC---------CCcc-eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCC
Q 047411 86 DITIMLS--GSIIAPNGPNEWKED---------DKSK-WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLA 153 (226)
Q Consensus 86 ~v~l~~~--g~l~~~~~~~~~~~~---------~~~~-~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~r 153 (226)
+++|... |+|...- ..-|... ..+| ++.+.+++|++|+|- +|. ....
T Consensus 157 ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gi-tl~--nSp~----------------- 215 (431)
T PLN02218 157 NLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNL-RVR--NAQQ----------------- 215 (431)
T ss_pred EEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCe-EEE--cCCC-----------------
Confidence 7888775 7776422 1123210 1133 788999999999983 221 1111
Q ss_pred ceEEEEeecCcEEEeeeEEeCC---Cc-eEEEEeCeeeEEEEeEEEECCCCCCCCCeEEec-CeecEEEEeeEEecC
Q 047411 154 PTVLKFDRCNNLRMNNMNFINS---PQ-THVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQ-ASSNVYIHNAHISNG 225 (226)
Q Consensus 154 p~~i~~~~~~nv~i~~i~i~ns---~~-~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~-~s~~v~I~n~~i~~g 225 (226)
.-+.+.+|+|++|+|+++.++ |. -++++..|+||+|+|+.|.+ ..|.|-+- +|+||+|+||++..|
T Consensus 216 -w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~G 286 (431)
T PLN02218 216 -IQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPG 286 (431)
T ss_pred -EEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECC
Confidence 248889999999999999874 22 36999999999999999997 45777775 478899998887644
No 19
>PLN02497 probable pectinesterase
Probab=98.10 E-value=0.00016 Score=63.18 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhhhhcc-cc-----cceEEeeecCccCCCCcchHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEee
Q 047411 3 ADLCAILYFLYLISTASIR-IN-----ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHP 75 (226)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~-----~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~ 75 (226)
.|+.++||.++|+|+.... +. ++.+.|.. ||. -|-..||+||+ +++... +..+|+|-+| +|+-.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Va~-----dGs-Gdf~TIq~AId-avP~~~~~~~~I~Ik~G-~Y~Ek- 74 (331)
T PLN02497 4 HRIIIGLIALCCFCLPHLIEAKPFGVYQQQVFVDQ-----SGH-GNFTTIQSAID-SVPSNNKHWFCINVKAG-LYREK- 74 (331)
T ss_pred eeehHHHHHHHHhhcchhhhcCCccccceEEEECC-----CCC-CCccCHHHHHh-hccccCCceEEEEEeCc-EEEEE-
Confidence 4677788877766664321 11 12333432 442 34778999995 555421 0236999999 99754
Q ss_pred eeeeCCCcCccEEEEEee
Q 047411 76 ITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 76 l~l~~~~ks~~v~l~~~g 93 (226)
+.++.. |. +++|+.+|
T Consensus 75 V~Ip~~-k~-~itl~G~g 90 (331)
T PLN02497 75 VKIPYD-KP-FIVLVGAG 90 (331)
T ss_pred EEecCC-CC-cEEEEecC
Confidence 233211 44 78877653
No 20
>PLN02155 polygalacturonase
Probab=98.03 E-value=3.8e-05 Score=68.77 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=64.6
Q ss_pred eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc----eEEEEeCeee
Q 047411 112 WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ----THVTVMGCIG 187 (226)
Q Consensus 112 ~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~----~~i~~~~s~~ 187 (226)
++.+.+.+|++|+|- ++- - .....+.+.+|+|++|+++++.++.. -++++..|+|
T Consensus 147 ~i~~~~~~nv~i~gi-tl~--n------------------Sp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~n 205 (394)
T PLN02155 147 SISFNSAKDVIISGV-KSM--N------------------SQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTG 205 (394)
T ss_pred ceeEEEeeeEEEECe-EEE--c------------------CCCeEEEEECeeeEEEEEEEEECCCCCCCCCcccccccee
Confidence 688888999999982 221 1 11135888899999999999998532 3588999999
Q ss_pred EEEEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEec
Q 047411 188 VEFGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHISN 224 (226)
Q Consensus 188 v~i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~~ 224 (226)
|+|+|+.|.+ ..|.|-+.+ |+||+|+||.+..
T Consensus 206 V~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~ 238 (394)
T PLN02155 206 VTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGP 238 (394)
T ss_pred EEEEeeEEec-----CCceEEcCCCCceEEEEEEEEEC
Confidence 9999999997 456676653 6677777776654
No 21
>PLN02480 Probable pectinesterase
Probab=97.91 E-value=0.00099 Score=58.54 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCcchHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 37 DGNADDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 37 dg~~ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
|| ..|-..||+||+ +++... +..+|+|.+| +|. ..+.++.. |. +++|+.+
T Consensus 55 ~G-~g~f~TIQ~AId-aap~~~~~~~~I~Ik~G-vY~-E~V~I~~~-kp-~ItL~G~ 105 (343)
T PLN02480 55 NG-KGDFTSVQSAID-AVPVGNSEWIIVHLRKG-VYR-EKVHIPEN-KP-FIFMRGN 105 (343)
T ss_pred CC-CCCcccHHHHHh-hCccCCCceEEEEEcCc-EEE-EEEEECCC-Cc-eEEEEec
Confidence 44 356889999995 555411 0124889999 998 45555311 33 5676654
No 22
>PLN03010 polygalacturonase
Probab=97.90 E-value=0.00029 Score=63.42 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=61.9
Q ss_pred cEEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcE
Q 047411 86 DITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNL 165 (226)
Q Consensus 86 ~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv 165 (226)
+++|...|+|...- ..|- .++.+.+.+|++|+|- ++- -... .-+.+.+|+++
T Consensus 140 nv~I~G~G~IDG~G--~~ww-----~~l~~~~~~nv~v~gi-tl~--nsp~------------------~~i~i~~~~nv 191 (409)
T PLN03010 140 GLMIDGSGTIDGRG--SSFW-----EALHISKCDNLTINGI-TSI--DSPK------------------NHISIKTCNYV 191 (409)
T ss_pred ccEEeeceEEeCCC--cccc-----ceEEEEeecCeEEeee-EEE--cCCc------------------eEEEEeccccE
Confidence 77777778875311 1221 2688889999999983 221 1111 24788899999
Q ss_pred EEeeeEEeCCCc----eEEEEeCeeeEEEEeEEEECCC
Q 047411 166 RMNNMNFINSPQ----THVTVMGCIGVEFGFLSIQAPG 199 (226)
Q Consensus 166 ~i~~i~i~ns~~----~~i~~~~s~~v~i~~~~i~~~~ 199 (226)
+|+++++.++.. -++++..|++|+|+|+.|.+..
T Consensus 192 ~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gD 229 (409)
T PLN03010 192 AISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGD 229 (409)
T ss_pred EEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCC
Confidence 999999998542 3589999999999999999854
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.86 E-value=0.00014 Score=63.28 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=59.1
Q ss_pred ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEE
Q 047411 111 KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEF 190 (226)
Q Consensus 111 ~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i 190 (226)
..|.+.++++++|++- .+.+++..-+ .....++.+..|++++|++.++.+...-++.+..|++++|
T Consensus 78 ~GI~v~~s~~i~I~n~-~i~~~~~~~~-------------~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v 143 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRL-RVEWTGGPKS-------------SNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVV 143 (314)
T ss_pred CeEEEeCCCCEEEEee-EEEeccCccc-------------cCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEE
Confidence 4566777888888873 4444332111 1123356667777777777777776555677777777777
Q ss_pred EeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 191 GFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 191 ~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
+++++.. +..||+++.|.++.|+++.+.
T Consensus 144 ~nN~~~~-----n~~GI~i~~S~~~~v~~N~~~ 171 (314)
T TIGR03805 144 RNNVAEE-----NVAGIEIENSQNADVYNNIAT 171 (314)
T ss_pred ECCEEcc-----CcceEEEEecCCcEEECCEEe
Confidence 7777754 445666666666666666654
No 24
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00054 Score=58.40 Aligned_cols=112 Identities=20% Similarity=0.290 Sum_probs=77.5
Q ss_pred EEEEEeeEEEeeCCCCCcCCCCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEE
Q 047411 87 ITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLR 166 (226)
Q Consensus 87 v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~ 166 (226)
+.+.+.|++.++. ++ ...+.+...+|.||.|.|+ ++ ..-...|.+....||.
T Consensus 77 ~ii~v~Gti~~s~-ps-------~~k~~iki~sNkTivG~g~---~a-----------------~~~g~gl~i~~a~NVI 128 (345)
T COG3866 77 VIIVVKGTITAST-PS-------DKKITIKIGSNKTIVGSGA---DA-----------------TLVGGGLKIRDAGNVI 128 (345)
T ss_pred EEEEEcceEeccC-CC-------CceEEEeeccccEEEeecc---cc-----------------EEEeceEEEEeCCcEE
Confidence 4666778887652 11 1237788889999998531 00 1122358888899999
Q ss_pred EeeeEEeCCCc-----eEEEE-eCeeeEEEEeEEEECCCC---CCCCCe-EEec-CeecEEEEeeEEecCC
Q 047411 167 MNNMNFINSPQ-----THVTV-MGCIGVEFGFLSIQAPGT---SPNTDG-IHIQ-ASSNVYIHNAHISNGT 226 (226)
Q Consensus 167 i~~i~i~ns~~-----~~i~~-~~s~~v~i~~~~i~~~~~---~~ntDG-i~~~-~s~~v~I~n~~i~~gD 226 (226)
|+|++|+..+. -.|.+ ..+.|++|+++++..... ..-.|| +|+. .+.+|+|.+|++..+|
T Consensus 129 irNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~ 199 (345)
T COG3866 129 IRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHD 199 (345)
T ss_pred EEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCC
Confidence 99999999884 35777 788999999999998432 123455 4553 4678888888887654
No 25
>PLN02682 pectinesterase family protein
Probab=97.55 E-value=0.0074 Score=53.52 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-.-||+||+ +++... +..+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 80 Gdf~TIQ~AId-avP~~~~~r~vI~Ik~G-~Y~Ek-V~Ip~~-k~-~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAID-SLPVINLVRVVIKVNAG-TYREK-VNIPPL-KA-YITLEGAG 128 (369)
T ss_pred CCccCHHHHHh-hccccCCceEEEEEeCc-eeeEE-EEEecc-Cc-eEEEEecC
Confidence 45778999995 555421 0357899999 99754 333211 45 78887653
No 26
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.00044 Score=63.97 Aligned_cols=93 Identities=16% Similarity=0.201 Sum_probs=67.4
Q ss_pred eEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCc---eEEEEeCeeeE
Q 047411 112 WFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQ---THVTVMGCIGV 188 (226)
Q Consensus 112 ~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~---~~i~~~~s~~v 188 (226)
.+.+.+++||.+.|..+.. ..| ..+++..|+|++++|+++.+... -++.+..|+|+
T Consensus 240 ~~~l~~c~NV~~~g~~i~n---s~~------------------~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~Nv 298 (542)
T COG5434 240 TVVLKGCRNVLLEGLNIKN---SPL------------------WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNV 298 (542)
T ss_pred eEEEeccceEEEeeeEecC---CCc------------------EEEeeecccCceecceEEECCCCCCCCccccccceeE
Confidence 5667778888888843221 112 35888999999999999998743 27889999999
Q ss_pred EEEeEEEECCCC------CCCCCe-EEecCeecEEEEeeEEecC
Q 047411 189 EFGFLSIQAPGT------SPNTDG-IHIQASSNVYIHNAHISNG 225 (226)
Q Consensus 189 ~i~~~~i~~~~~------~~ntDG-i~~~~s~~v~I~n~~i~~g 225 (226)
.|++++|.+-.+ +...|+ =....|++++|+||++..|
T Consensus 299 lI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g 342 (542)
T COG5434 299 LIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG 342 (542)
T ss_pred EEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc
Confidence 999999998433 123332 1234578999999999765
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.51 E-value=0.0046 Score=51.31 Aligned_cols=64 Identities=23% Similarity=0.191 Sum_probs=48.6
Q ss_pred eEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEec
Q 047411 155 TVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISN 224 (226)
Q Consensus 155 ~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~ 224 (226)
..+.+..+.+.+|++.++.+... ++.+..+.+.+|++.+|.+ +..||.+..+.+.+|+++.|..
T Consensus 80 ~Gi~l~~s~~~~I~~N~i~~n~~-GI~l~~s~~~~I~~N~i~~-----~~~GI~l~~s~~n~I~~N~i~~ 143 (236)
T PF05048_consen 80 YGIYLMGSSNNTISNNTISNNGY-GIYLYGSSNNTISNNTISN-----NGYGIYLSSSSNNTITGNTISN 143 (236)
T ss_pred CCEEEEcCCCcEEECCEecCCCc-eEEEeeCCceEEECcEEeC-----CCEEEEEEeCCCCEEECeEEeC
Confidence 45777777766888888887766 8888888888888888863 6678888887888888887764
No 28
>PLN02176 putative pectinesterase
Probab=97.40 E-value=0.025 Score=49.67 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-..||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 49 Gdf~TIq~AId-avP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~~-k~-~vtl~G~g 97 (340)
T PLN02176 49 RYFKTVQSAID-SIPLQNQNWIRILIQNG-IYREK-VTIPKE-KG-YIYMQGKG 97 (340)
T ss_pred CCccCHHHHHh-hchhcCCceEEEEECCc-EEEEE-EEECCC-Cc-cEEEEEcC
Confidence 35778999995 555421 0346889999 99854 333211 55 89998874
No 29
>PLN02773 pectinesterase
Probab=97.39 E-value=0.0078 Score=52.42 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
|-.-||+||+ +++... +.-+|+|.+| +|.- .|.++.. |. +++|+.+
T Consensus 16 df~TIq~Aid-a~P~~~~~~~~I~Ik~G-~Y~E-~V~I~~~-k~-~itl~G~ 62 (317)
T PLN02773 16 DYCTVQDAID-AVPLCNRCRTVIRVAPG-VYRQ-PVYVPKT-KN-LITLAGL 62 (317)
T ss_pred CccCHHHHHh-hchhcCCceEEEEEeCc-eEEE-EEEECcC-Cc-cEEEEeC
Confidence 4778999995 555421 0347899999 9974 4444311 33 6777665
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.31 E-value=0.00064 Score=51.91 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=26.5
Q ss_pred EEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 156 VLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
++.+..+..++|++.+|.+ ...++.+....+++++++++... ..|+.+..+..++|++|.|.
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~ 86 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIE 86 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEE
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEE
Confidence 4444444444455555544 33444444444455555555442 14555555555555555554
No 31
>PLN02665 pectinesterase family protein
Probab=97.25 E-value=0.019 Score=51.01 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 41 DDSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
-|-..||+||+ +++...+ ..+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus 78 Gdf~TIq~AId-aiP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-kp-~Itl~G~ 125 (366)
T PLN02665 78 GDFKTITDAIK-SIPAGNTQRVIIDIGPG-EYNEK-ITIDRS-KP-FVTLYGS 125 (366)
T ss_pred CCccCHHHHHh-hCcccCCceEEEEEeCc-EEEEE-EEecCC-CC-EEEEEec
Confidence 35778999995 5554210 346889999 99853 333211 34 6777654
No 32
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.027 Score=49.03 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=51.1
Q ss_pred cceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEE
Q 047411 110 SKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVE 189 (226)
Q Consensus 110 ~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~ 189 (226)
+..+++. +.+++++| -+..|.|....+ .....+.-...+.-.|+...+... .+++.+..+.++.
T Consensus 69 G~~vtv~-aP~~~v~G-l~vr~sg~~lp~-------------m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~ 132 (408)
T COG3420 69 GSYVTVA-APDVIVEG-LTVRGSGRSLPA-------------MDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVR 132 (408)
T ss_pred ccEEEEe-CCCceeee-EEEecCCCCccc-------------ccceEEeccCcccceEEccccccc-ceEEEEeccCceE
Confidence 4456665 57888887 366666654322 111233334444555555555544 3466666666666
Q ss_pred EEeEEEECCCC---CCCCCeEEecCeecEEEEeeEE
Q 047411 190 FGFLSIQAPGT---SPNTDGIHIQASSNVYIHNAHI 222 (226)
Q Consensus 190 i~~~~i~~~~~---~~ntDGi~~~~s~~v~I~n~~i 222 (226)
|++++|....+ ..-.+||.++.++++.|..+.|
T Consensus 133 i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndi 168 (408)
T COG3420 133 IEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDI 168 (408)
T ss_pred EEeeEEeeccccchhhccCceEEEcCCCcEEEcCcc
Confidence 66666665432 2334555555555555554444
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.21 E-value=0.0047 Score=51.23 Aligned_cols=87 Identities=24% Similarity=0.227 Sum_probs=68.7
Q ss_pred cceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEE
Q 047411 110 SKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVE 189 (226)
Q Consensus 110 ~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~ 189 (226)
+..+.+....+++|++. +|.+. ...+.+..+.+++|++.++.+.. .++.+..+.+.+
T Consensus 35 ~~gi~~~~s~~~~I~~n-~i~~~---------------------~~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~ 91 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNN-TISNN---------------------RYGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNT 91 (236)
T ss_pred CCEEEEEEcCCeEEEee-EEECC---------------------CeEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcE
Confidence 34566666777777773 33322 24688999999999999999987 889999998889
Q ss_pred EEeEEEECCCCCCCCCeEEecCeecEEEEeeEEec
Q 047411 190 FGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISN 224 (226)
Q Consensus 190 i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~~ 224 (226)
|++.++.. +..||.+..+++.+|+++.|..
T Consensus 92 I~~N~i~~-----n~~GI~l~~s~~~~I~~N~i~~ 121 (236)
T PF05048_consen 92 ISNNTISN-----NGYGIYLYGSSNNTISNNTISN 121 (236)
T ss_pred EECCEecC-----CCceEEEeeCCceEEECcEEeC
Confidence 99999987 4459999999999999999863
No 34
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.20 E-value=0.0056 Score=55.04 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeeeeeeCC-CcCccEEEEEe--eEEEeeCCCCCcCCCCCcceEEEeCc
Q 047411 42 DSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPITFTGP-CKSSDITIMLS--GSIIAPNGPNEWKEDDKSKWFDIQSV 118 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l~l~~~-~ks~~v~l~~~--g~l~~~~~~~~~~~~~~~~~i~~~~~ 118 (226)
+.++||+||+ ++++ |.+|+++.| +|.-..|.+.+. .++.+++|.-+ |....+ ....+.+.+
T Consensus 3 s~~~lq~Ai~-~a~p---GD~I~L~~G-ty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~----------G~s~l~i~G- 66 (425)
T PF14592_consen 3 SVAELQSAID-NAKP---GDTIVLADG-TYKDVEIVFKGSGTAAKPITLRAENPGKVVIT----------GESNLRISG- 66 (425)
T ss_dssp SHHHHHHHHH-H--T---T-EEEE-SE-EEET-EEEE-S--BTTB-EEEEESSTTSEEEE----------ES-EEEE-S-
T ss_pred CHHHHHHHHH-hCCC---CCEEEECCc-eeecceEEEEecccCCCCEEEEecCCCeEEEe----------cceeEEEEe-
Confidence 4689999995 5565 899999999 997435555321 01124555443 211100 012344443
Q ss_pred cceEEEeceEE-eCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC--------ceEE-EEeCeeeE
Q 047411 119 DSLQIDGSGTI-DGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP--------QTHV-TVMGCIGV 188 (226)
Q Consensus 119 ~nv~I~G~G~i-dG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~--------~~~i-~~~~s~~v 188 (226)
+.++|+|. .+ +|... . ..-. ..|...-. ..|.++++.++.|.+-. .|-. .....++-
T Consensus 67 ~yl~v~GL-~F~ng~~~-------~---~~vi-~fr~~~~~-~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~N 133 (425)
T PF14592_consen 67 SYLVVSGL-KFKNGYTP-------T---GAVI-SFRNGGDA-SYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHN 133 (425)
T ss_dssp SSEEEES--EEEEE----------T---TT---TTS--SEE-E-SSS-EEES-EEES--SS-S-SEEE---TT-----S-
T ss_pred eeEEEeCe-EEecCCCC-------C---CceE-EeecCCCc-ceecceEEEeEEeeccCCcccccCceEEEEEEeeccCc
Confidence 55555552 22 11100 0 0000 11211111 24788888888887531 1321 02467788
Q ss_pred EEEeEEEECCCCCCCCCeEE--ec----CeecEEEEeeEEe
Q 047411 189 EFGFLSIQAPGTSPNTDGIH--IQ----ASSNVYIHNAHIS 223 (226)
Q Consensus 189 ~i~~~~i~~~~~~~ntDGi~--~~----~s~~v~I~n~~i~ 223 (226)
+|+++.+.+......+=.++ .. ...+-+|++++|.
T Consensus 134 rvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~ 174 (425)
T PF14592_consen 134 RVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFG 174 (425)
T ss_dssp EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE
T ss_pred eEEccEeeccccCCcEEEEEecccCccccccCceEEecccc
Confidence 99999999853333333333 21 2346678998886
No 35
>PLN02634 probable pectinesterase
Probab=97.19 E-value=0.022 Score=50.28 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCcchHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 37 DGNADDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 37 dg~~ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
||. -|-..||+||+ +++.. .+..+|+|-+| +|.-. +.++.. |. +++|+.+|
T Consensus 63 dGs-Gdf~TIQaAId-a~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-k~-~ItL~G~g 114 (359)
T PLN02634 63 NGH-GDFRSVQDAVD-SVPKNNTMSVTIKINAG-FYREK-VVVPAT-KP-YITFQGAG 114 (359)
T ss_pred CCC-CCccCHHHHHh-hCcccCCccEEEEEeCc-eEEEE-EEEcCC-CC-eEEEEecC
Confidence 443 35778999995 55542 10347899999 99754 333211 44 78887764
No 36
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.18 E-value=0.025 Score=50.99 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=32.3
Q ss_pred EeecCcEEEeeeEEeCCCc--------eEEE-EeCeeeEEEEeEEEECCCC
Q 047411 159 FDRCNNLRMNNMNFINSPQ--------THVT-VMGCIGVEFGFLSIQAPGT 200 (226)
Q Consensus 159 ~~~~~nv~i~~i~i~ns~~--------~~i~-~~~s~~v~i~~~~i~~~~~ 200 (226)
....+++..+||+|+|+-. ..+. ....+.+.+.+|++...++
T Consensus 202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD 252 (422)
T PRK10531 202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD 252 (422)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc
Confidence 3468999999999999943 2222 3468899999999998664
No 37
>smart00656 Amb_all Amb_all domain.
Probab=97.13 E-value=0.005 Score=49.79 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=53.3
Q ss_pred eEEEEeecCcEEEeeeEEeCCCc------eEEEEeCeeeEEEEeEEEECCC----CCCCCCeE-Eec-CeecEEEEeeEE
Q 047411 155 TVLKFDRCNNLRMNNMNFINSPQ------THVTVMGCIGVEFGFLSIQAPG----TSPNTDGI-HIQ-ASSNVYIHNAHI 222 (226)
Q Consensus 155 ~~i~~~~~~nv~i~~i~i~ns~~------~~i~~~~s~~v~i~~~~i~~~~----~~~ntDGi-~~~-~s~~v~I~n~~i 222 (226)
..|.+..++||.|++++|++... -++.+..+++|.|++|++.... ...-.||. ++. .+.+|+|.+|.+
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 35778789999999999998744 3788899999999999999741 11224664 443 478999999988
Q ss_pred ec
Q 047411 223 SN 224 (226)
Q Consensus 223 ~~ 224 (226)
..
T Consensus 112 ~~ 113 (190)
T smart00656 112 HN 113 (190)
T ss_pred ec
Confidence 64
No 38
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.13 E-value=0.017 Score=53.50 Aligned_cols=50 Identities=12% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCCcchHHHHHHHHHHhccc--CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 37 DGNADDSMAFIKAWNNTCSA--TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 37 dg~~ddt~aiq~Ai~~a~~~--~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
||. -|-.-||+||+++... .. .-+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus 232 dGs-G~f~TIq~AI~a~~~~~~~~-r~vI~Ik~G-vY~E~-V~I~~~-k~-nItl~G~ 283 (529)
T PLN02170 232 DGS-GTHKTIGEALLSTSLESGGG-RTVIYLKAG-TYHEN-LNIPTK-QK-NVMLVGD 283 (529)
T ss_pred CCC-CchhhHHHHHHhcccccCCc-eEEEEEeCC-eeEEE-EecCCC-Cc-eEEEEEc
Confidence 443 3577899999643332 22 457999999 99743 333211 34 6776655
No 39
>PLN02671 pectinesterase
Probab=97.12 E-value=0.02 Score=50.69 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 41 DDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
-|-.-||+||+ +++.. .+..+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus 69 Gdf~TIQ~AId-avP~~~~~~~~I~Ik~G-vY~Ek-V~I~~~-k~-~Itl~G~ 116 (359)
T PLN02671 69 GDSLTVQGAVD-MVPDYNSQRVKIYILPG-IYREK-VLVPKS-KP-YISFIGN 116 (359)
T ss_pred CCccCHHHHHH-hchhcCCccEEEEEeCc-eEEEE-EEECCC-CC-eEEEEec
Confidence 34778999995 55442 10347999999 99754 333211 44 6777654
No 40
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.99 E-value=0.0012 Score=42.84 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=22.4
Q ss_pred ccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEEeee
Q 047411 34 AAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLVHPI 76 (226)
Q Consensus 34 A~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~~~l 76 (226)
|+|||++|||+||.+|++ +.+. | .++=-.|.||.++++
T Consensus 1 A~GDGvtdDt~A~~a~l~-a~~~---g-~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALE-ASPV---G-RKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHH-HS-T---T-S-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHh-ccCC---C-eEEecCCceEEEeeC
Confidence 689999999999999994 4332 3 444456669998754
No 41
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.95 E-value=0.037 Score=51.42 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-+-..||+||+ +++... +.-+|+|.+| +|.- .+.++.. |. +++|+.+|
T Consensus 228 G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~itl~G~g 276 (530)
T PLN02933 228 GNFTTINEAVS-AAPNSSETRFIIYIKGG-EYFE-NVELPKK-KT-MIMFIGDG 276 (530)
T ss_pred CCccCHHHHHH-hchhcCCCcEEEEEcCc-eEEE-EEEecCC-Cc-eEEEEEcC
Confidence 34678999995 554421 0357999999 9984 4444311 33 67776553
No 42
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.94 E-value=0.0059 Score=55.11 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=49.3
Q ss_pred EEEEeecCcEEEeeeEEeCCC------ceEEEEeCeeeEEEEeEEEECCC-C-----------------CCCCCeEEecC
Q 047411 156 VLKFDRCNNLRMNNMNFINSP------QTHVTVMGCIGVEFGFLSIQAPG-T-----------------SPNTDGIHIQA 211 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~------~~~i~~~~s~~v~i~~~~i~~~~-~-----------------~~ntDGi~~~~ 211 (226)
++.-...++++|+|++|+++. ...+++..|++++|+++++.+.. . .....+|+++.
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~ 187 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFD 187 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEec
Confidence 455567999999999999985 34688899999999999999852 1 01223444555
Q ss_pred eecEEEEeeEEe
Q 047411 212 SSNVYIHNAHIS 223 (226)
Q Consensus 212 s~~v~I~n~~i~ 223 (226)
|++.+|++++|+
T Consensus 188 S~g~~V~~N~I~ 199 (455)
T TIGR03808 188 ALGLIVARNTII 199 (455)
T ss_pred cCCCEEECCEEE
Confidence 557777777765
No 43
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.86 E-value=0.032 Score=52.11 Aligned_cols=113 Identities=15% Similarity=0.219 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHhcccCCC----CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCCCCcCCCCCcceEEEe
Q 047411 41 DDSMAFIKAWNNTCSATAK----SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQ 116 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g~----g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~~~~~~~~~~~~i~~~ 116 (226)
-+-.-||+||+ +++...+ .-+|+|.+| +|.-. +.++.. |. +++|..+|
T Consensus 233 G~f~TI~~Av~-a~p~~~~~~~~r~vI~vk~G-~Y~E~-V~i~~~-k~-~i~l~G~g----------------------- 284 (538)
T PLN03043 233 DNFTTITDAIA-AAPNNSKPEDGYFVIYAREG-YYEEY-VVVPKN-KK-NIMLIGDG----------------------- 284 (538)
T ss_pred CCCcCHHHHHH-hccccCCCCcceEEEEEcCe-eeEEE-EEeCCC-CC-cEEEEecC-----------------------
Confidence 34778999995 5554210 237999999 99743 333211 33 66665543
Q ss_pred CccceEEEece-EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCce----EEE-EeCeeeEEE
Q 047411 117 SVDSLQIDGSG-TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQT----HVT-VMGCIGVEF 190 (226)
Q Consensus 117 ~~~nv~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~----~i~-~~~s~~v~i 190 (226)
.....|+|.- ..|| |. ..+...+.+ ..+++..+|++|+|+... .+. ...++...+
T Consensus 285 -~~~tiIt~~~~~~dg-----~~------------T~~saT~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f 345 (538)
T PLN03043 285 -INKTIITGNHSVVDG-----WT------------TFNSSTFAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTF 345 (538)
T ss_pred -CCCeEEEeCCccCCC-----Cc------------cccceEEEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEE
Confidence 1222233210 1111 11 122223444 467888888888886421 222 245677788
Q ss_pred EeEEEECCCC
Q 047411 191 GFLSIQAPGT 200 (226)
Q Consensus 191 ~~~~i~~~~~ 200 (226)
.+|++.+..+
T Consensus 346 ~~C~~~gyQD 355 (538)
T PLN03043 346 YRCSFEGYQD 355 (538)
T ss_pred EeeEEeccCc
Confidence 8888887654
No 44
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.85 E-value=0.04 Score=51.59 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHhccc---CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSA---TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~---~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-+-.-||+||+ +++. .+ .-+|+|.+| +|.-. +.++.. |. +++|..+|
T Consensus 251 g~f~TIq~Av~-a~p~~~~~~-r~vI~vk~G-vY~E~-V~i~~~-k~-~v~l~G~g 300 (553)
T PLN02708 251 CCYKTVQEAVN-AAPDNNGDR-KFVIRIKEG-VYEET-VRVPLE-KK-NVVFLGDG 300 (553)
T ss_pred CCccCHHHHHH-hhhhccCCc-cEEEEEeCc-eEEee-eeecCC-Cc-cEEEEecC
Confidence 34678999995 4544 12 458999999 99853 333211 33 77776653
No 45
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.005 Score=52.64 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=56.2
Q ss_pred EEEEeecCcEEEeeeEEe-CCCceEEEEeCeeeEEEEeEEEECCC-CCCCCCeEEe-cCeecEEEEeeEEecC
Q 047411 156 VLKFDRCNNLRMNNMNFI-NSPQTHVTVMGCIGVEFGFLSIQAPG-TSPNTDGIHI-QASSNVYIHNAHISNG 225 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~-ns~~~~i~~~~s~~v~i~~~~i~~~~-~~~ntDGi~~-~~s~~v~I~n~~i~~g 225 (226)
.+.+.-|.|.+|.|+--. ---.|++.+.+.+||.|+|++|+... .-|+-|+|.+ ..+.|++|++|.+..|
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~ 166 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGG 166 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccc
Confidence 388888999999987521 11247899999999999999999843 2356799999 7899999999999864
No 46
>PLN02304 probable pectinesterase
Probab=96.83 E-value=0.055 Score=48.18 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-.-||+||+ +++.. .+..+|+|.+| +|.-. |.++.. |. +++|+.+|
T Consensus 85 Gdf~TIQ~AId-avP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~-K~-~Itl~G~g 133 (379)
T PLN02304 85 CNFTTVQSAVD-AVGNFSQKRNVIWINSG-IYYEK-VTVPKT-KP-NITFQGQG 133 (379)
T ss_pred CCccCHHHHHh-hCcccCCCcEEEEEeCe-EeEEE-EEECCC-CC-cEEEEecC
Confidence 34678999995 55441 10456899999 99743 333211 45 78887764
No 47
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.82 E-value=0.016 Score=50.19 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
-|-..||+||+ +++... ..-+|+|.+| +|.-. +.++.. |. +++|..+
T Consensus 10 gdf~TIq~Aid-a~p~~~~~~~~I~I~~G-~Y~E~-V~i~~~-k~-~v~l~G~ 57 (298)
T PF01095_consen 10 GDFTTIQAAID-AAPDNNTSRYTIFIKPG-TYREK-VTIPRS-KP-NVTLIGE 57 (298)
T ss_dssp SSBSSHHHHHH-HS-SSSSS-EEEEE-SE-EEE---EEE-ST-ST-TEEEEES
T ss_pred CCccCHHHHHH-hchhcCCceEEEEEeCe-eEccc-cEeccc-cc-eEEEEec
Confidence 45667999995 455421 0347999999 99743 444311 23 6776654
No 48
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.038 Score=51.51 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhcccC--CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 42 DSMAFIKAWNNTCSAT--AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~--g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
+-.-||+||+ +++.. + .-+|+|.+| +|.-. +.++.. |. +++|+.+
T Consensus 243 ~f~TIq~Av~-a~p~~~~~-r~vI~Vk~G-vY~E~-V~I~~~-k~-~i~l~G~ 289 (537)
T PLN02506 243 HYRTITEAIN-EAPNHSNR-RYIIYVKKG-VYKEN-IDMKKK-KT-NIMLVGD 289 (537)
T ss_pred CccCHHHHHH-hchhcCCC-cEEEEEeCC-eeeEE-EeccCC-Cc-eEEEEEc
Confidence 4678999995 55442 2 458999999 99754 222210 33 6666655
No 49
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.81 E-value=0.032 Score=52.13 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-.-||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 240 G~f~TIq~Ai~-a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~-k~-~i~l~G~g 288 (541)
T PLN02416 240 GNFSTITDAIN-FAPNNSNDRIIIYVREG-VYEEN-VEIPIY-KT-NIVLIGDG 288 (541)
T ss_pred CCccCHHHHHH-hhhhcCCceEEEEEeCc-eeEEE-EecCCC-Cc-cEEEEecC
Confidence 35778999995 454421 0346899999 99753 333211 34 67776553
No 50
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.81 E-value=0.057 Score=50.95 Aligned_cols=48 Identities=8% Similarity=0.198 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
|-.-||+||+ +++... +.-+|+|.+| +|.-..+.++.. |. +++|+.+|
T Consensus 283 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~-k~-ni~l~G~g 331 (587)
T PLN02484 283 TFKTISEAIK-KAPEHSSRRTIIYVKAG-RYEENNLKVGRK-KT-NLMFIGDG 331 (587)
T ss_pred CcccHHHHHH-hccccCCCcEEEEEeCC-EEEEEEEEECCC-Cc-eEEEEecC
Confidence 4678999995 555421 0357899999 998754555321 33 67776653
No 51
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.81 E-value=0.12 Score=46.08 Aligned_cols=149 Identities=13% Similarity=0.176 Sum_probs=94.6
Q ss_pred EeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEE-eeeeeeCCCcCccEEEEEee-EEEee-CCCCCc
Q 047411 28 NVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLV-HPITFTGPCKSSDITIMLSG-SIIAP-NGPNEW 104 (226)
Q Consensus 28 ~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~-~~l~l~~~~ks~~v~l~~~g-~l~~~-~~~~~~ 104 (226)
.|+.|-..|+. | +.+||+. ..+|.+-||.+|.+ +++.++ + ..+|...| +++.. ++...+
T Consensus 45 qvkt~~~~P~e--D----le~~I~~-------haKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnGA~V~v~~~~~~~f 106 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQ-------HAKVALRPGAVYVIRKPVNIR----S-CCYIIGNGATVRVNGPDRVAF 106 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHh-------cCEEEeCCCCEEEEeeeEEec----c-eEEEECCCEEEEEeCCCCceE
Confidence 46677777764 3 7788853 34788888889998 599994 5 78887774 54431 222112
Q ss_pred CC--CCCcceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCCceEEEE
Q 047411 105 KE--DDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSPQTHVTV 182 (226)
Q Consensus 105 ~~--~~~~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~ 182 (226)
.- .+..|. +.+..+|++.. =.+++.+ .-..+.|....++.+.|+.|.+.+.-++..
T Consensus 107 ~v~~~~~~P~--V~gM~~VtF~n-i~F~~~~-------------------~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~ 164 (386)
T PF01696_consen 107 RVCMQSMGPG--VVGMEGVTFVN-IRFEGRD-------------------TFSGVVFHANTNTLFHGCSFFGFHGTCLES 164 (386)
T ss_pred EEEcCCCCCe--EeeeeeeEEEE-EEEecCC-------------------ccceeEEEecceEEEEeeEEecCcceeEEE
Confidence 21 112232 33455666655 1233322 123678888899999999999987777655
Q ss_pred eCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 183 MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 183 ~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
. ...+|+++++.+. --||.--+-..+.|++|.|+
T Consensus 165 ~--~~~~VrGC~F~~C-----~~gi~~~~~~~lsVk~C~Fe 198 (386)
T PF01696_consen 165 W--AGGEVRGCTFYGC-----WKGIVSRGKSKLSVKKCVFE 198 (386)
T ss_pred c--CCcEEeeeEEEEE-----EEEeecCCcceEEeeheeee
Confidence 4 5778899988763 34555555566777777664
No 52
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.80 E-value=0.0062 Score=49.63 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=48.7
Q ss_pred EEE-eecCcEEEeeeEEeCC---------------CceEEEEeCeeeEEEEeEEEECCCC---CCCCCe-EEec-CeecE
Q 047411 157 LKF-DRCNNLRMNNMNFINS---------------PQTHVTVMGCIGVEFGFLSIQAPGT---SPNTDG-IHIQ-ASSNV 215 (226)
Q Consensus 157 i~~-~~~~nv~i~~i~i~ns---------------~~~~i~~~~s~~v~i~~~~i~~~~~---~~ntDG-i~~~-~s~~v 215 (226)
+.+ .+++||.|++++|++. ..-.+.+..+.+|.|++|++..... ....|| +|+. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 4899999999999992 2234888899999999999998521 112566 6775 58999
Q ss_pred EEEeeEEec
Q 047411 216 YIHNAHISN 224 (226)
Q Consensus 216 ~I~n~~i~~ 224 (226)
+|.+|.|..
T Consensus 119 TiS~n~f~~ 127 (200)
T PF00544_consen 119 TISNNIFDN 127 (200)
T ss_dssp EEES-EEEE
T ss_pred EEEchhccc
Confidence 999999975
No 53
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.79 E-value=0.054 Score=50.28 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCCcchHHHHHHHHHHhcccC-CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 37 DGNADDSMAFIKAWNNTCSAT-AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 37 dg~~ddt~aiq~Ai~~a~~~~-g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
||. -|-..||+||+ +++.. .+.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 213 dGs-G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g 264 (520)
T PLN02201 213 DGT-GNFTTIMDAVL-AAPDYSTKRYVIYIKKG-VYLEN-VEIKKK-KW-NIMMVGDG 264 (520)
T ss_pred CCC-CCccCHHHHHH-hchhcCCCcEEEEEeCc-eeEEE-EEecCC-Cc-eEEEEecC
Confidence 443 35778999995 55542 10457999999 99743 334211 33 67776653
No 54
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.78 E-value=0.011 Score=44.85 Aligned_cols=66 Identities=24% Similarity=0.248 Sum_probs=48.8
Q ss_pred ceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecC-eecEEEEeeEEec
Q 047411 154 PTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQA-SSNVYIHNAHISN 224 (226)
Q Consensus 154 p~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~-s~~v~I~n~~i~~ 224 (226)
...+.+....++.|+++++.+.. .++.+..+.+++|+++++... ...||.+.. +++++|++|+|..
T Consensus 45 ~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~~----~~~gi~~~~~~~~~~i~~n~~~~ 111 (158)
T PF13229_consen 45 GYGIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIENN----GDYGIYISNSSSNVTIENNTIHN 111 (158)
T ss_dssp TTSEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEECS----SS-SCE-TCEECS-EEES-EEEC
T ss_pred CcEEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEcC----CCccEEEeccCCCEEEEeEEEEe
Confidence 34688888899999999999997 788889999999999999984 334999987 8999999999975
No 55
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.78 E-value=0.038 Score=51.89 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHhcccC-----CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSAT-----AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~-----g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-+-.-||+||+ +++.. + .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 260 G~f~TIq~Av~-a~p~~~~~~~~-~~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g 311 (566)
T PLN02713 260 GNFTTINDAVA-AAPNNTDGSNG-YFVIYVTAG-VYEEY-VSIPKN-KK-YLMMIGDG 311 (566)
T ss_pred CCCCCHHHHHH-hhhcccCCCCc-eEEEEEcCc-EEEEE-EEecCC-Cc-eEEEEecC
Confidence 34678999995 55442 1 247999999 99753 333211 33 66666553
No 56
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.77 E-value=0.048 Score=50.93 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHhccc----CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSA----TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~----~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-.-||+||+ +++. .+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 233 G~f~TIq~Ai~-a~p~~~~~~~-r~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g 283 (539)
T PLN02995 233 GHFNTVQAAID-VAGRRKVTSG-RFVIYVKRG-IYQEN-INVRLN-ND-DIMLVGDG 283 (539)
T ss_pred CCccCHHHHHH-hcccccCCCc-eEEEEEeCC-EeEEE-EEecCC-CC-cEEEEEcC
Confidence 35778999995 4542 22 457999999 99864 333211 44 77776654
No 57
>PLN02197 pectinesterase
Probab=96.62 E-value=0.081 Score=49.86 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-.-||+||+ +++...+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 285 G~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-ni~l~G~g 333 (588)
T PLN02197 285 GQFKTISQAVM-ACPDKNPGRCIIHIKAG-IYNEQ-VTIPKK-KN-NIFMFGDG 333 (588)
T ss_pred CCcCCHHHHHH-hccccCCceEEEEEeCc-eEEEE-EEccCC-Cc-eEEEEEcC
Confidence 34678999995 5544210 346899999 99753 333211 33 67776553
No 58
>PLN02916 pectinesterase family protein
Probab=96.58 E-value=0.091 Score=48.53 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHhccc-----CCCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSA-----TAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~-----~g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-.-||+||+ +++. .. .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 197 G~f~TIq~AI~-a~P~~~~~~~~-r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g 248 (502)
T PLN02916 197 GTHRTINQALA-ALSRMGKSRTN-RVIIYVKAG-VYNEK-VEIDRH-MK-NVMFVGDG 248 (502)
T ss_pred CCccCHHHHHH-hcccccCCCCc-eEEEEEeCc-eeeEE-EEecCC-Cc-eEEEEecC
Confidence 34668999995 4542 12 347999999 99853 333211 33 67776654
No 59
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.52 E-value=0.093 Score=49.60 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
+-..||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 296 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g 343 (596)
T PLN02745 296 NFTTISDALA-AMPAKYEGRYVIYVKQG-IYDET-VTVDKK-MV-NVTMYGDG 343 (596)
T ss_pred CcccHHHHHH-hccccCCceEEEEEeCC-eeEEE-EEEcCC-Cc-eEEEEecC
Confidence 4678999995 555421 0357899999 99854 334211 33 67776553
No 60
>smart00656 Amb_all Amb_all domain.
Probab=96.48 E-value=0.016 Score=46.91 Aligned_cols=48 Identities=29% Similarity=0.404 Sum_probs=40.7
Q ss_pred eEEEEeCeeeEEEEeEEEECCCC--CCCCCeEEecCeecEEEEeeEEecC
Q 047411 178 THVTVMGCIGVEFGFLSIQAPGT--SPNTDGIHIQASSNVYIHNAHISNG 225 (226)
Q Consensus 178 ~~i~~~~s~~v~i~~~~i~~~~~--~~ntDGi~~~~s~~v~I~n~~i~~g 225 (226)
.++.+..++||.|+|++|+.+.. ..+.|+|.+..+++|+|++|.+..+
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~ 81 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGC 81 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcc
Confidence 46667778999999999998643 2478999999999999999999865
No 61
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.38 E-value=0.12 Score=48.61 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-+-.-||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 269 G~f~TIq~Av~-a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~-k~-~i~l~G~g 317 (572)
T PLN02990 269 GQYKTINEALN-AVPKANQKPFVIYIKQG-VYNEK-VDVTKK-MT-HVTFIGDG 317 (572)
T ss_pred CCCcCHHHHHh-hCcccCCceEEEEEeCc-eeEEE-EEecCC-CC-cEEEEecC
Confidence 34667999995 555421 0347999999 99853 333211 34 77776654
No 62
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.38 E-value=0.16 Score=46.83 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-+-.-||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|..+|
T Consensus 207 G~f~TIq~AI~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-nItliGdg 255 (509)
T PLN02488 207 GKYNTVNAAIA-AAPEHSRKRFVIYIKTG-VYDEI-VRIGST-KP-NLTLIGDG 255 (509)
T ss_pred CCccCHHHHHH-hchhcCCCcEEEEEeCC-eeEEE-EEecCC-Cc-cEEEEecC
Confidence 45678999995 554421 0457999999 99853 333211 34 78877664
No 63
>PLN02432 putative pectinesterase
Probab=96.33 E-value=0.61 Score=40.29 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 42 DSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
|-.-||+||+ +++... +..+|+|.+| +|.-. +.++.. |. +++|+.++
T Consensus 22 ~f~TIq~Aid-a~p~~~~~~~~I~I~~G-~Y~E~-V~ip~~-k~-~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAID-AVPSNNSQLVFIWVKPG-IYREK-VVVPAD-KP-FITLSGTQ 69 (293)
T ss_pred CccCHHHHHh-hccccCCceEEEEEeCc-eeEEE-EEEecc-Cc-eEEEEEcC
Confidence 4778999995 555421 0357899999 99643 334211 45 88888763
No 64
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=96.29 E-value=0.012 Score=49.34 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=7.5
Q ss_pred cceEEEeCccceEEEe
Q 047411 110 SKWFDIQSVDSLQIDG 125 (226)
Q Consensus 110 ~~~i~~~~~~nv~I~G 125 (226)
+||++. +++.|+.
T Consensus 52 YP~Wh~---~~~~i~~ 64 (277)
T PF12541_consen 52 YPLWHS---DNIKIEN 64 (277)
T ss_pred CceEEE---CCeEEEe
Confidence 566664 3566655
No 65
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=96.28 E-value=0.13 Score=43.98 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=84.2
Q ss_pred cccceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEE--E-eeeeeeCCCcCccEEEEEeeEEEee
Q 047411 22 INADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFL--V-HPITFTGPCKSSDITIMLSGSIIAP 98 (226)
Q Consensus 22 ~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~--~-~~l~l~~~~ks~~v~l~~~g~l~~~ 98 (226)
....++++.||-. .|=-++|.+|+.+ +.+|++|+| --. + .++.++ . +-+|++.|.|+..
T Consensus 30 ~~~~~vni~dy~~-----~dwiasfkqaf~e-------~qtvvvpag-l~cenint~ifip----~-gktl~v~g~l~gn 91 (464)
T PRK10123 30 PARQSVNINDYNP-----HDWIASFKQAFSE-------GQTVVVPAG-LVCDNINTGIFIP----P-GKTLHILGSLRGN 91 (464)
T ss_pred CCCceeehhhcCc-----ccHHHHHHHHhcc-------CcEEEecCc-cEecccccceEeC----C-CCeEEEEEEeecC
Confidence 3577899999954 4556788888842 679999999 322 2 256663 4 6777777766531
Q ss_pred CCCCCcC--------CCCCc----ceEEEeCccceEEEeceEEeCCCcccccccccccccCCcccCCceEEEEeecCcEE
Q 047411 99 NGPNEWK--------EDDKS----KWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLR 166 (226)
Q Consensus 99 ~~~~~~~--------~~~~~----~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~ 166 (226)
.. ..|. ++..+ .-+-+.| ++++|.| |...|----. ..+-+ ...|+. -+|++
T Consensus 92 gr-grfvlqdg~qv~ge~~g~~hnitldvrg-sdc~ikg---iamsgfgpvt------qiyig-gk~prv-----mrnl~ 154 (464)
T PRK10123 92 GR-GRFVLQDGSQVTGEEGGSMHNITLDVRG-SDCTIKG---LAMSGFGPVT------QIYIG-GKNKRV-----MRNLT 154 (464)
T ss_pred Cc-eeEEEecCCEeecCCCceeeeEEEeecc-CceEEee---eeecccCcee------EEEEc-CCCchh-----hhccE
Confidence 11 1111 01111 1122232 4555555 2222200000 00000 233332 25788
Q ss_pred EeeeEEeCCCceEEE----EeCeeeEEEEeEEEECCCCCCCCCeEEec---CeecEEEEeeEEe
Q 047411 167 MNNMNFINSPQTHVT----VMGCIGVEFGFLSIQAPGTSPNTDGIHIQ---ASSNVYIHNAHIS 223 (226)
Q Consensus 167 i~~i~i~ns~~~~i~----~~~s~~v~i~~~~i~~~~~~~ntDGi~~~---~s~~v~I~n~~i~ 223 (226)
|+++++..+.+ .+. -...++.+|.++++.. --.|.|... .-+++.|.+-.|+
T Consensus 155 id~itv~~any-ailrqgfhnq~dgaritn~rfs~----lqgdaiewnvaindr~ilisdhvie 213 (464)
T PRK10123 155 IDNLTVSHANY-AILRQGFHNQIIGANITNCKFSD----LQGDAIEWNVAINDRDILISDHVIE 213 (464)
T ss_pred EccEEEeeccH-HHHhhhhhhccccceeecccccc----ccCceEEEEEEecccceeeehhehe
Confidence 88888887732 211 1234466677777665 345776542 3467777665544
No 66
>PLN02314 pectinesterase
Probab=96.28 E-value=0.13 Score=48.49 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 42 DSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
+-.-||+||+ +++...+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 289 ~f~TI~~Av~-a~p~~~~~r~vI~ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVA-SIPKKSKSRFVIYVKEG-TYVEN-VLLDKS-KW-NVMIYGDG 336 (586)
T ss_pred CccCHHHHHh-hccccCCceEEEEEcCc-eEEEE-EEecCC-Cc-eEEEEecC
Confidence 4667999995 5554210 347999999 99753 333211 33 67776653
No 67
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.17 E-value=0.11 Score=49.17 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
-|-..||+||+ +++... +.-+|+|.+| +|.-. +.++.. |. +++|..+|
T Consensus 285 G~f~TI~~Av~-a~p~~~~~r~vI~ik~G-vY~E~-V~i~~~-k~-ni~l~Gdg 333 (587)
T PLN02313 285 GDFTTVAAAVA-AAPEKSNKRFVIHIKAG-VYREN-VEVTKK-KK-NIMFLGDG 333 (587)
T ss_pred CCCccHHHHHH-hccccCCceEEEEEeCc-eeEEE-EEeCCC-CC-eEEEEecC
Confidence 35678999995 555421 0348999999 99753 233211 33 66666553
No 68
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=96.01 E-value=0.023 Score=47.81 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=19.5
Q ss_pred EEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEE
Q 047411 181 TVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHI 222 (226)
Q Consensus 181 ~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i 222 (226)
.+++|+||+|+|.++.+- |.| |.|+||+|.|++|
T Consensus 151 ~Fq~~kNvei~ns~l~sK------DAF--Wn~eNVtVyDS~i 184 (277)
T PF12541_consen 151 SFQYCKNVEIHNSKLDSK------DAF--WNCENVTVYDSVI 184 (277)
T ss_pred EeeceeeEEEEccEEecc------ccc--ccCCceEEEcceE
Confidence 356777777777777763 222 4445555555444
No 69
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=95.97 E-value=0.23 Score=47.44 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEe
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLS 92 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~ 92 (226)
-+-.-||+||+ +++... +.-+|+|-+| +|.-. +.+... |. +++|+.+
T Consensus 260 G~f~TIq~Av~-a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~Gd 307 (670)
T PLN02217 260 GQYKTINEALN-FVPKKKNTTFVVHIKAG-IYKEY-VQVNRS-MT-HLVFIGD 307 (670)
T ss_pred CCccCHHHHHH-hccccCCceEEEEEeCC-ceEEE-EEEcCC-CC-cEEEEec
Confidence 35778999995 555421 0347999999 99753 333211 23 5666554
No 70
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.95 E-value=0.047 Score=44.48 Aligned_cols=60 Identities=28% Similarity=0.417 Sum_probs=42.1
Q ss_pred CcEEEeee----EEeCCCceEEEEe-CeeeEEEEeEEEECC-----------CCCCCCCeEEecCeecEEEEeeEEecC
Q 047411 163 NNLRMNNM----NFINSPQTHVTVM-GCIGVEFGFLSIQAP-----------GTSPNTDGIHIQASSNVYIHNAHISNG 225 (226)
Q Consensus 163 ~nv~i~~i----~i~ns~~~~i~~~-~s~~v~i~~~~i~~~-----------~~~~ntDGi~~~~s~~v~I~n~~i~~g 225 (226)
+|-+|.|. ++.+ +++.+. .++||.|+|++|+.. ......|+|.+..+++|+|++|.+..+
T Consensus 21 snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~ 96 (200)
T PF00544_consen 21 SNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWG 96 (200)
T ss_dssp SSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEET
T ss_pred CCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEecc
Confidence 55566662 3444 356665 899999999999982 123678999999999999999999865
No 71
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=95.92 E-value=0.89 Score=42.68 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcccCCC-CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 42 DSMAFIKAWNNTCSATAK-SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g~-g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
|-..||+||+ +++...+ .-+|+|.+| +|.-. +.++.. |. +++|+.+|
T Consensus 247 ~f~TIq~Ai~-a~P~~~~~r~vI~Ik~G-~Y~E~-V~i~~~-k~-~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVA-SAPDNSKTRYVIYVKKG-TYKEN-VEIGKK-KK-NLMLVGDG 294 (548)
T ss_pred CcccHHHHHH-hhhhcCCceEEEEEeCc-eeeEE-EEecCC-Cc-eEEEEecC
Confidence 4778999995 5554220 347999999 99753 334311 44 88888775
No 72
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=95.67 E-value=0.017 Score=34.93 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=24.3
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 180 VTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 180 i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
+.+..+.+.+|++.++.. +.|||++..|++-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 445556666666666664 455666666666666666654
No 73
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=95.35 E-value=1.7 Score=40.98 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhcccC--CCCCEEEecCCCeEEEeeeeeeCCCcCccEEEEEee
Q 047411 42 DSMAFIKAWNNTCSAT--AKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~--g~g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g 93 (226)
+-.-||+||+ +++.. + .-+|+|.+| +|.- .+.++.. |. +++|..+|
T Consensus 269 ~f~tI~~Av~-a~p~~~~~-~~vI~ik~G-vY~E-~V~i~~~-k~-~i~~~G~g 316 (565)
T PLN02468 269 KYKTISEALK-DVPEKSEK-RTIIYVKKG-VYFE-NVRVEKK-KW-NVVMVGDG 316 (565)
T ss_pred CccCHHHHHH-hchhcCCC-cEEEEEeCC-ceEE-EEEecCC-CC-eEEEEecC
Confidence 4678999995 55442 2 458999999 9985 3344311 34 88888875
No 74
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=94.12 E-value=0.55 Score=43.49 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=64.1
Q ss_pred CCEEEecCCCeEEEeeeeeeCCCcCccEEEEEeeEEEeeCCC------CCcCCC----C-C----cce--EEEeCccceE
Q 047411 60 SPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGP------NEWKED----D-K----SKW--FDIQSVDSLQ 122 (226)
Q Consensus 60 g~~v~iP~G~tY~~~~l~l~~~~ks~~v~l~~~g~l~~~~~~------~~~~~~----~-~----~~~--i~~~~~~nv~ 122 (226)
...|||-|| -|.-|.+....- ++ ++.+...|+|....-. ..|... + . +-+ +...+..++.
T Consensus 256 ~~~VYlApG-AyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~ 332 (582)
T PF03718_consen 256 TKWVYLAPG-AYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLT 332 (582)
T ss_dssp --EEEE-TT-EEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEE
T ss_pred ccEEEEcCC-cEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEE
Confidence 468999999 998888876522 34 7777777898753211 112100 0 0 111 1223344566
Q ss_pred EEeceEEeCCCcccccccccccccCCcccCCceEEEEeecC----cEEEeeeEEeCCCceEEE-EeCeeeEEEEeEEEEC
Q 047411 123 IDGSGTIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCN----NLRMNNMNFINSPQTHVT-VMGCIGVEFGFLSIQA 197 (226)
Q Consensus 123 I~G~G~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~----nv~i~~i~i~ns~~~~i~-~~~s~~v~i~~~~i~~ 197 (226)
+.|- ||. -..+| .+.+.+-. .+.|++.+...+=.|.-. +.-+.+-+|+||.+++
T Consensus 333 ~~Gi-TI~--~pP~~------------------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~ 391 (582)
T PF03718_consen 333 CEGI-TIN--DPPFH------------------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV 391 (582)
T ss_dssp EES--EEE----SS-------------------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE
T ss_pred EEee-Eec--CCCcc------------------eEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe
Confidence 6552 221 01111 24444333 478888888875333221 2234566778888886
Q ss_pred CCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 198 PGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 198 ~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
|.|+|.+.. +++.|+||.+-
T Consensus 392 -----nDD~iKlYh-S~v~v~~~ViW 411 (582)
T PF03718_consen 392 -----NDDAIKLYH-SNVSVSNTVIW 411 (582)
T ss_dssp -----SS-SEE--S-TTEEEEEEEEE
T ss_pred -----cCchhheee-cCcceeeeEEE
Confidence 778887777 58888888764
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=93.96 E-value=1.4 Score=38.42 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHhcccCC-CCCEEEecCCCeEEEeeeeeeCCCcC-ccEEEEEe
Q 047411 41 DDSMAFIKAWNNTCSATA-KSPTMVIPKGKTFLVHPITFTGPCKS-SDITIMLS 92 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g-~g~~v~iP~G~tY~~~~l~l~~~~ks-~~v~l~~~ 92 (226)
++-..||+|+++|....+ |...|.+-+| .|.- .+.++ ++ -.++|+.+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~G-vY~e-~v~Vp---~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAG-VYQE-TVYVP---AAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccc-eece-eEEec---CCCCceeEEec
Confidence 667789999965444321 0234667899 8863 33333 22 03777765
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.94 E-value=0.25 Score=29.66 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=36.9
Q ss_pred EEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEEC
Q 047411 157 LKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQA 197 (226)
Q Consensus 157 i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~ 197 (226)
|.+..+.+.+|++-++.+... ++++..+.+.++++.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEc
Confidence 678889999999999999988 9999999999999998876
No 77
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=89.45 E-value=4.7 Score=34.80 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCceEEEEeecCcEEEeeeEEeCCCceEEE--------EeCeeeEEEEeEEEECCCCCCCCCeEEecC---eecEEEEee
Q 047411 152 LAPTVLKFDRCNNLRMNNMNFINSPQTHVT--------VMGCIGVEFGFLSIQAPGTSPNTDGIHIQA---SSNVYIHNA 220 (226)
Q Consensus 152 ~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~--------~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~---s~~v~I~n~ 220 (226)
.....+.++.|+|+.|+++.+.||...-+- +.--+|..+.+++..+..-...--||.+.+ .+-|-|.|.
T Consensus 290 idnatvaiygcdnfvidni~mvnsagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqissgnatsfvaitn~ 369 (464)
T PRK10123 290 IDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNI 369 (464)
T ss_pred CCcceEEEEcccceEEeccccccccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEeccCCcceEEEEeee
Confidence 444678999999999999999999764321 223457788888888866556778888865 455667666
Q ss_pred EE
Q 047411 221 HI 222 (226)
Q Consensus 221 ~i 222 (226)
.+
T Consensus 370 ~m 371 (464)
T PRK10123 370 EM 371 (464)
T ss_pred eh
Confidence 54
No 78
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=89.32 E-value=4.2 Score=32.64 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=26.4
Q ss_pred EEEeeeEEeCCCc------eEEEEeCeeeEEEEeEEEECC
Q 047411 165 LRMNNMNFINSPQ------THVTVMGCIGVEFGFLSIQAP 198 (226)
Q Consensus 165 v~i~~i~i~ns~~------~~i~~~~s~~v~i~~~~i~~~ 198 (226)
+.|+|++|..... -++.+..++++.|+++++.+.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~ 133 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS 133 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc
Confidence 3488888876542 458888999999999999974
No 79
>PLN02432 putative pectinesterase
Probab=83.24 E-value=22 Score=30.72 Aligned_cols=44 Identities=11% Similarity=-0.054 Sum_probs=31.6
Q ss_pred EEEEeecCcEEEeeeEEeCCCc---eEE-EEeCeeeEEEEeEEEECCCC
Q 047411 156 VLKFDRCNNLRMNNMNFINSPQ---THV-TVMGCIGVEFGFLSIQAPGT 200 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~~---~~i-~~~~s~~v~i~~~~i~~~~~ 200 (226)
.+.+ ..+++..+||+|+|+.. -.+ .....+...+.+|++....+
T Consensus 88 T~~v-~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QD 135 (293)
T PLN02432 88 TLSV-LASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQD 135 (293)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccc
Confidence 3444 47999999999999832 122 23457889999999998654
No 80
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=82.55 E-value=4.3 Score=34.18 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=42.5
Q ss_pred eEEEEeecCcEEEeeeEEeCC---CceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCee
Q 047411 155 TVLKFDRCNNLRMNNMNFINS---PQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASS 213 (226)
Q Consensus 155 ~~i~~~~~~nv~i~~i~i~ns---~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~ 213 (226)
..+.+....+.+|+++++.|+ ...++.+..+ +.+|+|+++... ..+||.+....
T Consensus 89 qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~----~~~GI~v~g~~ 145 (246)
T PF07602_consen 89 QNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNN----GREGIFVTGTS 145 (246)
T ss_pred eeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECC----ccccEEEEeee
Confidence 456777789999999999999 3456777766 999999999984 46888776653
No 81
>PF15240 Pro-rich: Proline-rich
Probab=82.45 E-value=0.88 Score=36.22 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhhhhcccccceEEe
Q 047411 5 LCAILYFLYLISTASIRINADEFNV 29 (226)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~v 29 (226)
||+|||+|+||.|.|+-.....++-
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~~ 25 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVSQ 25 (179)
T ss_pred ChhHHHHHHHHHhhhcccccccccc
Confidence 7899999999999887655544443
No 82
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=81.14 E-value=8.2 Score=34.05 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=41.2
Q ss_pred EEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeE
Q 047411 156 VLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAH 221 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~ 221 (226)
.+..+.++.-.+++-.++.. .+++|.+.+.+..+++..... |.-|.-++.|++++|.|+.
T Consensus 174 gIy~~~S~~~~~~gnr~~~~-RygvHyM~t~~s~i~dn~s~~-----N~vG~ALMys~~l~V~~nr 233 (408)
T COG3420 174 GIYSDTSQHNVFKGNRFRDL-RYGVHYMYTNDSRISDNSSRD-----NRVGYALMYSDRLKVSDNR 233 (408)
T ss_pred eEEEcccccceecccchhhe-eeeEEEEeccCcEeecccccC-----CcceEEEEEeccEEEEcCc
Confidence 45555556666666666666 567777777777777665543 6778888888888888764
No 83
>PLN02176 putative pectinesterase
Probab=79.18 E-value=36 Score=30.14 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=32.1
Q ss_pred EEEEeecCcEEEeeeEEeCCCc----------eEE-EEeCeeeEEEEeEEEECCCC
Q 047411 156 VLKFDRCNNLRMNNMNFINSPQ----------THV-TVMGCIGVEFGFLSIQAPGT 200 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~~----------~~i-~~~~s~~v~i~~~~i~~~~~ 200 (226)
-+.+ .++++..+|++|+|+.. ..+ .....+...+.+|++...++
T Consensus 116 T~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QD 170 (340)
T PLN02176 116 TFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQD 170 (340)
T ss_pred EEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccc
Confidence 3454 58999999999999831 222 23457889999999998654
No 84
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=78.38 E-value=11 Score=34.40 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=44.0
Q ss_pred cCCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 151 KLAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 151 ~~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
.+.+..|.... ..-++++-+|++|.. .+.+.+..+.+|++..+.......++-||.+.. ++=+|.|++|.
T Consensus 212 dGE~EIISvKS-~~N~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-~~H~I~nNY~~ 281 (425)
T PF14592_consen 212 DGEVEIISVKS-SDNTIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-EGHTIYNNYFE 281 (425)
T ss_dssp -SSSEEEEEES-BT-EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S-BS-EEES-EEE
T ss_pred CCceeEEEeec-CCceEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEec-CCcEEEcceee
Confidence 45566777764 455789999999955 788999999999999999865445788999999 56678888876
No 85
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=78.08 E-value=49 Score=31.30 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=32.7
Q ss_pred EEEEeecCcEEEeeeEEeCCCc----eEEE-EeCeeeEEEEeEEEECCCC
Q 047411 156 VLKFDRCNNLRMNNMNFINSPQ----THVT-VMGCIGVEFGFLSIQAPGT 200 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~~----~~i~-~~~s~~v~i~~~~i~~~~~ 200 (226)
.+.+ ..+++..+|++|+|+.. ..+. -..++...+.+|++.+..+
T Consensus 317 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD 365 (548)
T PLN02301 317 TVAA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD 365 (548)
T ss_pred EEEE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc
Confidence 3444 57999999999999843 2232 2468899999999998764
No 86
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=71.88 E-value=72 Score=28.72 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=44.4
Q ss_pred eecCcEEEeeeEEeCCC-ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 160 DRCNNLRMNNMNFINSP-QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 160 ~~~~nv~i~~i~i~ns~-~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
.+-.+|++.|+.|...+ +-++.+....++++.++.+.+. +..-++.+ ....|++|.|.
T Consensus 118 ~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g~cl~~~--~~~~VrGC~F~ 176 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HGTCLESW--AGGEVRGCTFY 176 (386)
T ss_pred eeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cceeEEEc--CCcEEeeeEEE
Confidence 34467999999999988 6677788888999999999984 34444444 47788888773
No 87
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=70.92 E-value=61 Score=30.79 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=32.7
Q ss_pred EEEEeecCcEEEeeeEEeCCCce----EEE-EeCeeeEEEEeEEEECCCC
Q 047411 156 VLKFDRCNNLRMNNMNFINSPQT----HVT-VMGCIGVEFGFLSIQAPGT 200 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~~~----~i~-~~~s~~v~i~~~~i~~~~~ 200 (226)
.+.+ ..+++..+|++|+|+..- .+. ...++...+.+|++.+.++
T Consensus 339 T~~v-~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD 387 (565)
T PLN02468 339 TFAV-FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD 387 (565)
T ss_pred eeeE-ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc
Confidence 4444 478999999999998432 222 3468899999999998764
No 88
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=69.31 E-value=41 Score=24.49 Aligned_cols=57 Identities=16% Similarity=-0.007 Sum_probs=45.8
Q ss_pred eecCcEEEeeeEEeCCC---ceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEe
Q 047411 160 DRCNNLRMNNMNFINSP---QTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHN 219 (226)
Q Consensus 160 ~~~~nv~i~~i~i~ns~---~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n 219 (226)
..+.+..+++-.+.+.. .|++.+..+.+..+.+.++. ... . .+|++++.+....+.+
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~~-~-g~G~~~~~~~~~~~~~ 132 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TNN-D-GDGNYLSDSSGGDLIG 132 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-eec-C-CCCEEEeCCCCcEEEc
Confidence 77888888888888874 89999998888877777776 221 2 7999999988888887
No 89
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=68.89 E-value=30 Score=28.55 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCceEEEEeecCcEEEeeeEEeCCCceEEEEeCeeeEEEEeEEEECCCCCCCCCeEEecCee-cEEEEe
Q 047411 152 LAPTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASS-NVYIHN 219 (226)
Q Consensus 152 ~rp~~i~~~~~~nv~i~~i~i~ns~~~~i~~~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~-~v~I~n 219 (226)
..+.+|.++ +..+|+|+.|-.+..-++|... +++|+|+..... -.|.+.+.+.. .++|.+
T Consensus 52 ~q~~vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~g 112 (215)
T PF03211_consen 52 DQDPVFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIG 112 (215)
T ss_dssp C---SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEES
T ss_pred ccceEEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeC
Confidence 344466675 6789999998777777888887 789999988874 34666665544 444443
No 90
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=66.85 E-value=25 Score=28.35 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=37.6
Q ss_pred cEEEeeeEEeCCCceEEEEeC---------eeeEEEEeEEEECCCC---CCCCCeEEecCeecEEEEeeEEe
Q 047411 164 NLRMNNMNFINSPQTHVTVMG---------CIGVEFGFLSIQAPGT---SPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 164 nv~i~~i~i~ns~~~~i~~~~---------s~~v~i~~~~i~~~~~---~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
++.|-+-+|.|...+++-+.. .++|.|++..+..... .....||-..+=.|.+|+|+.|+
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfD 74 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFD 74 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeec
Confidence 556666666666666654432 2377777777766443 34556777766667777777765
No 91
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=49.32 E-value=29 Score=16.94 Aligned_cols=11 Identities=18% Similarity=0.139 Sum_probs=5.4
Q ss_pred eEEEEeEEEEC
Q 047411 187 GVEFGFLSIQA 197 (226)
Q Consensus 187 ~v~i~~~~i~~ 197 (226)
+++|+++++..
T Consensus 3 ~~~i~~n~i~~ 13 (26)
T smart00710 3 NVTIENNTIRN 13 (26)
T ss_pred CEEEECCEEEe
Confidence 44555555554
No 92
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=45.84 E-value=34 Score=24.97 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=40.4
Q ss_pred EEEEeecCcEEEeeeEEeCCCceEEEE--------eCeeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEE
Q 047411 156 VLKFDRCNNLRMNNMNFINSPQTHVTV--------MGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHI 222 (226)
Q Consensus 156 ~i~~~~~~nv~i~~i~i~ns~~~~i~~--------~~s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i 222 (226)
.+.+. ..+++++|+++.++..++..+ ..+.+..+++..+..... .+..||.+..+.+..+.++.+
T Consensus 39 ~~~i~-~~~~~~~G~~~~~~~~~G~~~~~~~~~~~~~~~~~~i~~N~~~~~~~-~~~~Gi~~~~~~~~~~~~N~i 111 (146)
T smart00722 39 NITIN-SNDVRVDGITIGGSTVTGIYVSASGDGVIQNTGKNLIIDNVTINGTE-GSGAGIVVTAGSEGLFIGNRI 111 (146)
T ss_pred EEEEe-CCCCEEECeEEEeEEeeCcccccCCceEecCccccEEEcceecCCCc-cceEEEEEECCccceEecCeE
Confidence 45554 455677888777632222222 235567777777765321 358999998877777777766
No 93
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=45.49 E-value=90 Score=23.10 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=20.5
Q ss_pred CCEEEecCCCeEEEe-e-eeeeCCCcCccEEEEEeeEEEeeCC
Q 047411 60 SPTMVIPKGKTFLVH-P-ITFTGPCKSSDITIMLSGSIIAPNG 100 (226)
Q Consensus 60 g~~v~iP~G~tY~~~-~-l~l~~~~ks~~v~l~~~g~l~~~~~ 100 (226)
+..|+||+|.+..+. + -.+ -.|.++|+|.+.++
T Consensus 12 g~~V~I~~g~~v~lD~~~~~l--------~~l~I~G~L~f~~~ 46 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVSTPKL--------GSLIIGGTLIFDDD 46 (125)
T ss_pred CCEEEECCCCEEEEcCCChhe--------eEEEEEEEEEEccC
Confidence 789999999444443 2 222 23334899988664
No 94
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=42.85 E-value=36 Score=28.69 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=9.2
Q ss_pred EeecCcEEEeeeEEeCC
Q 047411 159 FDRCNNLRMNNMNFINS 175 (226)
Q Consensus 159 ~~~~~nv~i~~i~i~ns 175 (226)
|....+-+|+|+.|+|.
T Consensus 206 F~~l~gatI~nL~l~nv 222 (250)
T PF05342_consen 206 FDTLNGATIKNLNLKNV 222 (250)
T ss_pred hhcccCCEEEcceeEEe
Confidence 33445556666666554
No 95
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=41.42 E-value=1.3e+02 Score=28.22 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=32.7
Q ss_pred eEEEEeecCcEEEeeeEEeCCCce----EEE-EeCeeeEEEEeEEEECCCC
Q 047411 155 TVLKFDRCNNLRMNNMNFINSPQT----HVT-VMGCIGVEFGFLSIQAPGT 200 (226)
Q Consensus 155 ~~i~~~~~~nv~i~~i~i~ns~~~----~i~-~~~s~~v~i~~~~i~~~~~ 200 (226)
.-+.+ ..+++..+||+|+|+... .+. ...+++..+.+|++.+..+
T Consensus 263 aT~~v-~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD 312 (497)
T PLN02698 263 ATFTI-TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD 312 (497)
T ss_pred eeEEE-ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc
Confidence 34444 479999999999999542 222 2458888999999988654
No 96
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=41.25 E-value=22 Score=25.21 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=19.9
Q ss_pred eecCccC-CCCcchHHHHHHHHHHhcccCCCCCEEEecCCCeEEE
Q 047411 30 LDFGAAG-DGNADDSMAFIKAWNNTCSATAKSPTMVIPKGKTFLV 73 (226)
Q Consensus 30 ~dyGA~~-dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY~~ 73 (226)
.|||..+ +.....-..|++||.+-... ..+ +..| ||+.
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~---~~t--v~~G-tYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKN---PDT--VEKG-TYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH----TT---EE---BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCC---CCe--Eecc-ceec
Confidence 5788887 44445567889999655544 446 4499 9984
No 97
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=38.24 E-value=48 Score=27.32 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=25.5
Q ss_pred eeeEEEEeEEEECCCCCCCCCeEEecCeecEEEEeeEEe
Q 047411 185 CIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHIS 223 (226)
Q Consensus 185 s~~v~i~~~~i~~~~~~~ntDGi~~~~s~~v~I~n~~i~ 223 (226)
-++.+++|+.|-. +-.||||..+ +-+|+|++.+
T Consensus 60 e~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwe 92 (215)
T PF03211_consen 60 EDGATLKNVIIGA----NQADGIHCKG--SCTLENVWWE 92 (215)
T ss_dssp ETTEEEEEEEETS----S-TT-EEEES--CEEEEEEEES
T ss_pred cCCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEec
Confidence 4577899998865 4679999998 7899999876
No 98
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=35.61 E-value=41 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=11.2
Q ss_pred CCEEEecCCCeEEEeee
Q 047411 60 SPTMVIPKGKTFLVHPI 76 (226)
Q Consensus 60 g~~v~iP~G~tY~~~~l 76 (226)
|+..+||+|+.|.+..+
T Consensus 58 G~~F~VP~gN~Y~i~N~ 74 (85)
T PF11699_consen 58 GGSFQVPRGNYYSIKNI 74 (85)
T ss_dssp T-EEEE-TT-EEEEEE-
T ss_pred CCEEEECCCCEEEEEEC
Confidence 78999999988887654
No 99
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=28.34 E-value=88 Score=24.33 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=4.6
Q ss_pred CCEEEecCC
Q 047411 60 SPTMVIPKG 68 (226)
Q Consensus 60 g~~v~iP~G 68 (226)
|.+|+||+|
T Consensus 120 GDvi~iPkG 128 (152)
T PF06249_consen 120 GDVIFIPKG 128 (152)
T ss_dssp T-EEEE-TT
T ss_pred CcEEEECCC
Confidence 566666666
No 100
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.10 E-value=68 Score=26.80 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=28.8
Q ss_pred ceEEeeecCccCCCCcch------------HHHHHHHHHHhcccCCCCCEEEe-cCCCeEEE
Q 047411 25 DEFNVLDFGAAGDGNADD------------SMAFIKAWNNTCSATAKSPTMVI-PKGKTFLV 73 (226)
Q Consensus 25 ~~~~v~dyGA~~dg~~dd------------t~aiq~Ai~~a~~~~g~g~~v~i-P~G~tY~~ 73 (226)
..+|++||....-...|| .+.|-+||+++++... ..+|++ |.|+.|.-
T Consensus 34 ~~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~~-~~vi~lsP~G~~f~Q 94 (240)
T COG0336 34 EVVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAKK-AKVILLSPQGKPFTQ 94 (240)
T ss_pred EeecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhccC-CeEEEECCCCCccCH
Confidence 357777777654444555 4679999976555422 233443 88965543
No 101
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=27.53 E-value=82 Score=26.31 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=29.8
Q ss_pred ceEEeeecCccCCCCcchH------------HHHHHHHHHhcccCCCCCEEEe-cCCCeEEE
Q 047411 25 DEFNVLDFGAAGDGNADDS------------MAFIKAWNNTCSATAKSPTMVI-PKGKTFLV 73 (226)
Q Consensus 25 ~~~~v~dyGA~~dg~~ddt------------~aiq~Ai~~a~~~~g~g~~v~i-P~G~tY~~ 73 (226)
..+|++||.-..-.+.||+ +.+.+||+++.+. . ..+|++ |.|++|.-
T Consensus 34 ~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~epl~~al~~~~~~-~-~~vi~lsP~G~~f~Q 93 (233)
T TIGR00088 34 EVVNPRDFSKDKHKTVDDRPYGGGAGMVLKPEPIRDALHSVKAP-A-GTVILLSPQGRKFDQ 93 (233)
T ss_pred EEEcchhccCCCCCcCCCCCCCCCCCcEechHHHHHHHHHHhhc-C-CcEEEECCCCCcCCH
Confidence 3577888876555556664 6799999655432 2 345665 77866654
No 102
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=27.00 E-value=86 Score=26.37 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=30.0
Q ss_pred ceEEeeecCccCCCCcch------------HHHHHHHHHHhcccC-CCCCEEEe-cCCCeEEE
Q 047411 25 DEFNVLDFGAAGDGNADD------------SMAFIKAWNNTCSAT-AKSPTMVI-PKGKTFLV 73 (226)
Q Consensus 25 ~~~~v~dyGA~~dg~~dd------------t~aiq~Ai~~a~~~~-g~g~~v~i-P~G~tY~~ 73 (226)
..+|++||.-..-.+.|| .+.|.+||+++.+.. .+..+|++ |.|++|.-
T Consensus 34 ~~~n~Rdf~~dkh~~VDD~pyGGG~GMvm~~epi~~al~~~~~~~~~~~~vi~lsP~G~~f~Q 96 (244)
T PRK00026 34 EVHNPRDFTTDKHRTVDDTPYGGGAGMVMKPEPLFDAIDAAKAAAGEKAKVILLSPQGKPFTQ 96 (244)
T ss_pred EEEcchhccCCCCCCCCCCCCCCCccceecHHHHHHHHHHHHhhcCCCCeEEEECCCCCcCCH
Confidence 357788887655555566 478999997654322 10235555 77866654
No 103
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=26.83 E-value=64 Score=25.99 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHhcccCCCCCEEEecCCCeE
Q 047411 41 DDSMAFIKAWNNTCSATAKSPTMVIPKGKTF 71 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY 71 (226)
.+.+++++|.+ +.++ | ...++||+| +-
T Consensus 83 ~~~~~~~~~~~-~L~~-G-~~l~IFPEG-tr 109 (210)
T cd07986 83 KNRESLREALR-HLKN-G-GALIIFPAG-RV 109 (210)
T ss_pred hhHHHHHHHHH-HHhC-C-CEEEEECCc-cc
Confidence 45667888884 5555 4 677889999 54
No 104
>TIGR03119 one_C_fhcD formylmethanofuran--tetrahydromethanopterin N-formyltransferase. Members of this protein family are the FhcD protein of tetrahydromethanopterin (H4MPT)-dependent C-1 carrier metabolism. In the archaea, FhcD is designated formylmethanofuran--tetrahydromethanopterin N-formyltransferase, while in bacteria it is commonly designated as formyltransferase/hydrolase complex subunit D. FhcD is essential for one-carbon metabolism in at least three groups of prokaryotes: methanogenic archaea, sulfate-reducing archaea, and methylotrophic bacteria.
Probab=26.70 E-value=77 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.2
Q ss_pred CCCcch--HHHHHHHHHHhcccCCCCCEEEecCCCeE--EEee
Q 047411 37 DGNADD--SMAFIKAWNNTCSATAKSPTMVIPKGKTF--LVHP 75 (226)
Q Consensus 37 dg~~dd--t~aiq~Ai~~a~~~~g~g~~v~iP~G~tY--~~~~ 75 (226)
||.+.+ .+|.++.|+++|.. .+.+-|.+| .| .+++
T Consensus 241 dGl~~~aV~~Amr~Gi~Aa~~~---~Gv~~IsAG-NYGGkLG~ 279 (287)
T TIGR03119 241 DGLNEAAIAEAMRVGILAATEI---PGVVKITAG-NYGGKLGP 279 (287)
T ss_pred cCCCHHHHHHHHHHHHHHHhcC---CCeEEEecC-ccCCCCCc
Confidence 665555 78889999877764 459999999 88 3444
No 105
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=26.33 E-value=1.3e+02 Score=22.84 Aligned_cols=40 Identities=8% Similarity=0.227 Sum_probs=30.6
Q ss_pred EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEeCCC
Q 047411 128 TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFINSP 176 (226)
Q Consensus 128 ~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ns~ 176 (226)
..||+...||...+ ...|+.+.+...+.+.|+-+.+.-.+
T Consensus 24 L~D~~~~tyWQSdG---------~qgpH~I~l~f~~~v~i~~l~i~v~~ 63 (134)
T cd08666 24 LTDGDPDTYWESDG---------SQGQHWIRLHMKKGTIIKKLLLTVDA 63 (134)
T ss_pred hccCCCCccEecCC---------CCCCeEEEEEECCCcEeeEEEEEecC
Confidence 57889999997432 34488999999999999988877543
No 106
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=26.13 E-value=88 Score=25.91 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred ceEEeeecCccCCCCcchH------------HHHHHHHHHhcccCCCCCEEEe-cCCCeEEE
Q 047411 25 DEFNVLDFGAAGDGNADDS------------MAFIKAWNNTCSATAKSPTMVI-PKGKTFLV 73 (226)
Q Consensus 25 ~~~~v~dyGA~~dg~~ddt------------~aiq~Ai~~a~~~~g~g~~v~i-P~G~tY~~ 73 (226)
..+|++||.-..-...||+ +.+.+||+++.+. . ..+|++ |.|++|.-
T Consensus 34 ~~~n~Rdfs~dkh~~VDD~PyGGG~GMvm~~epl~~al~~~~~~-~-~~vi~lsP~G~~f~Q 93 (222)
T PRK14599 34 NPIQLRDFSGNKHNRVDDTIYGGGPGMLLRVEPIHKALLSLGEK-K-GIVILTSPSGIPFNQ 93 (222)
T ss_pred EEEcchhhcCCCCCccCCCCCCCCCCcEecchHHHHHHHHHhhc-C-CcEEEECCCCCccCH
Confidence 3577888876555556665 5689999654432 2 345555 77866654
No 107
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=26.12 E-value=40 Score=16.37 Aligned_cols=14 Identities=50% Similarity=0.541 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHhh
Q 047411 4 DLCAILYFLYLIST 17 (226)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (226)
++.+|++.++++|+
T Consensus 3 k~vIIlvvLLliSf 16 (19)
T PF13956_consen 3 KLVIILVVLLLISF 16 (19)
T ss_pred eehHHHHHHHhccc
Confidence 34455554455444
No 108
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=25.83 E-value=1.3e+02 Score=22.72 Aligned_cols=37 Identities=8% Similarity=0.313 Sum_probs=27.7
Q ss_pred EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEe
Q 047411 128 TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFI 173 (226)
Q Consensus 128 ~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ 173 (226)
..|++-..||...+ ...|+.+.+...+.+.|+-+.|.
T Consensus 19 L~D~~~~TYWQSDG---------~q~pH~I~i~f~~~v~i~~l~i~ 55 (131)
T cd08667 19 MTDGETSTYWQSDG---------SARSHWIRLKMKPDVVLRHLSIA 55 (131)
T ss_pred hhcCCCCccCccCC---------CCCCeEEEEEecCCeEEEEEEEE
Confidence 57888888997432 23588888888888888886655
No 109
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=25.26 E-value=1.6e+02 Score=26.18 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=26.7
Q ss_pred hhhhcccccceEEeeecCccCCCCcchHHHHHHHHH
Q 047411 16 STASIRINADEFNVLDFGAAGDGNADDSMAFIKAWN 51 (226)
Q Consensus 16 ~~~~~~~~~~~~~v~dyGA~~dg~~ddt~aiq~Ai~ 51 (226)
|.+.+....+...+.-=||.+.--..--+||++|++
T Consensus 17 ~~~~~~~~~~pliiAHRGas~~~PENTl~Af~~A~~ 52 (355)
T PRK11143 17 SAAAAADSAEKIVIAHRGASGYLPEHTLPAKAMAYA 52 (355)
T ss_pred hhHhhhcCCCcEEEECCCCCCCCCcchHHHHHHHHH
Confidence 333344456677788888888877778899999995
No 110
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.77 E-value=58 Score=23.18 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=4.6
Q ss_pred CCchhhHHH
Q 047411 1 MDADLCAIL 9 (226)
Q Consensus 1 ~~~~~~~~~ 9 (226)
|..+.+++|
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 555554444
No 111
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.29 E-value=53 Score=25.94 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.8
Q ss_pred CCEEEecCCCeEE
Q 047411 60 SPTMVIPKGKTFL 72 (226)
Q Consensus 60 g~~v~iP~G~tY~ 72 (226)
|+.|++|+| +|.
T Consensus 123 GDlivlPaG-iyH 134 (179)
T KOG2107|consen 123 GDLIVLPAG-IYH 134 (179)
T ss_pred CCEEEecCc-cee
Confidence 889999999 885
No 112
>PF02741 FTR_C: FTR, proximal lobe; InterPro: IPR002770 Formylmethanofuran:tetrahyromethanopterin formyltransferase (Ftr) is involved in C1 metabolism in methanogenic archaea, sulphate-reducing archaea and methylotrophic bacteria. It catalyses the following reversible reaction: N-formylmethanofuran + 5,6,7,8-tetrahydromethanopterin = methanofuran + 5-formyl-5,6,7,8-tetrahydromethanopterin Ftr from the thermophilic methanogen Methanopyrus kandleri (optimum growth temperature 98 degrees C) is a hyperthermophilic enzyme that is absolutely dependent on the presence of lyotropic salts for activity and thermostability. The crystal structure of Ftr, determined to a reveals a homotetramer composed essentially of two dimers. Each subunit is subdivided into two tightly associated lobes both consisting of a predominantly antiparallel beta sheet flanked by alpha helices forming an alpha/beta sandwich structure. The approximate location of the active site was detected in a region close to the dimer interface []. Ftr from the mesophilic methanogen Methanosarcina barkeri and the sulphate-reducing archaeon Archaeoglobus fulgidus have a similar structure []. In the methylotrophic bacterium Methylobacterium extorquens, Ftr interacts with three other polypeptides to form an Ftr/cyclohydrolase complex which catalyses the hydrolysis of formyl-tetrahydromethanopterin to formate during growth on C1 substrates [].; GO: 0016740 transferase activity, 0006730 one-carbon metabolic process; PDB: 1M5S_B 1M5H_E 1FTR_C 2FHJ_B 2FHK_D.
Probab=24.06 E-value=79 Score=24.40 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHhcccCCCCCEEEecCCCeE
Q 047411 41 DDSMAFIKAWNNTCSATAKSPTMVIPKGKTF 71 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY 71 (226)
.-.+|+++.|+++|+. .+.+.|.+| .|
T Consensus 110 av~~Amr~Gi~Aa~~~---~Gv~~IsAG-NY 136 (150)
T PF02741_consen 110 AVAEAMRAGIEAACAV---PGVVRISAG-NY 136 (150)
T ss_dssp HHHHHHHHHHHHHTTS---TTEEEEE----S
T ss_pred HHHHHHHHHHHHHhcC---CCeEEEecC-Cc
Confidence 3467888899877755 569999999 77
No 113
>PHA00672 hypothetical protein
Probab=24.04 E-value=1.5e+02 Score=22.40 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=10.7
Q ss_pred EEEecCCCeEEEeee
Q 047411 62 TMVIPKGKTFLVHPI 76 (226)
Q Consensus 62 ~v~iP~G~tY~~~~l 76 (226)
+|.||+| +-++|.+
T Consensus 51 ei~IPkG-t~LtG~~ 64 (152)
T PHA00672 51 TIRIPAG-VALTGAL 64 (152)
T ss_pred EEeccCc-eeeeeee
Confidence 6788999 8888743
No 114
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=23.43 E-value=77 Score=19.27 Aligned_cols=14 Identities=43% Similarity=0.773 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHhh
Q 047411 4 DLCAILYFLYLIST 17 (226)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (226)
+.|+|++++++++.
T Consensus 34 nfclilicllli~i 47 (52)
T PF04272_consen 34 NFCLILICLLLICI 47 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35666766665554
No 115
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=22.77 E-value=79 Score=19.22 Aligned_cols=14 Identities=43% Similarity=0.773 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHhh
Q 047411 4 DLCAILYFLYLIST 17 (226)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (226)
+.|+|+++++++|.
T Consensus 34 nf~lilicllli~i 47 (52)
T TIGR01294 34 NFCLILICLLLICI 47 (52)
T ss_pred HHHHHHHHHHHHHH
Confidence 34666666666554
No 116
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=22.58 E-value=78 Score=26.43 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHhcccCCCCCEEEecCCCeE
Q 047411 41 DDSMAFIKAWNNTCSATAKSPTMVIPKGKTF 71 (226)
Q Consensus 41 ddt~aiq~Ai~~a~~~~g~g~~v~iP~G~tY 71 (226)
.+..++++|.+ ...+.| ...++||+| |-
T Consensus 123 ~~~~~l~~~~~-~l~~~g-~sv~IFPEG-TR 150 (245)
T PRK15018 123 KAHGTIAEVVN-HFKKRR-ISIWMFPEG-TR 150 (245)
T ss_pred HHHHHHHHHHH-HHHhCC-CEEEEECCc-cC
Confidence 33456777774 444433 347899999 53
No 117
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=22.55 E-value=1.8e+02 Score=22.08 Aligned_cols=37 Identities=11% Similarity=0.363 Sum_probs=28.3
Q ss_pred EEeCCCcccccccccccccCCcccCCceEEEEeecCcEEEeeeEEe
Q 047411 128 TIDGRGKAWWDISCKINKKEGCVKLAPTVLKFDRCNNLRMNNMNFI 173 (226)
Q Consensus 128 ~idG~G~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~ 173 (226)
..||+-..||...+ ...|+.+.+...+.+.|+-+.+.
T Consensus 19 L~D~~~~tyWQSdG---------~q~pH~I~i~f~k~v~I~~l~i~ 55 (131)
T cd08665 19 LTDGNPKTYWESNG---------STGSHYINIHMHRGVVIRQLYML 55 (131)
T ss_pred hhcCCCCceEccCC---------CCCCeEEEEEECCCcEEEEEEEE
Confidence 57888888997432 23688899988999999887766
No 118
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=22.22 E-value=74 Score=18.89 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=9.7
Q ss_pred CCchhhHHHHHHH
Q 047411 1 MDADLCAILYFLY 13 (226)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (226)
||.|++++++=++
T Consensus 1 mD~RlliVl~Pil 13 (40)
T PRK13240 1 IDLRLLIVLAPIL 13 (40)
T ss_pred CchhHHHHHHHHH
Confidence 8999888876443
No 119
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=21.99 E-value=66 Score=22.63 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=8.5
Q ss_pred CCEEEecCCCeEEE
Q 047411 60 SPTMVIPKGKTFLV 73 (226)
Q Consensus 60 g~~v~iP~G~tY~~ 73 (226)
|..|++||| .|..
T Consensus 88 Ge~V~i~pg-~~H~ 100 (114)
T PF02373_consen 88 GEFVFIPPG-AYHQ 100 (114)
T ss_dssp T-EEEE-TT--EEE
T ss_pred CCEEEECCC-ceEE
Confidence 789999999 8865
No 120
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=21.73 E-value=1.4e+02 Score=22.32 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=16.9
Q ss_pred EeCCCceEEEEeCee---eEEEEeEEEECC
Q 047411 172 FINSPQTHVTVMGCI---GVEFGFLSIQAP 198 (226)
Q Consensus 172 i~ns~~~~i~~~~s~---~v~i~~~~i~~~ 198 (226)
++|.-.+.=++..|+ |+++++|++.+.
T Consensus 19 LKNget~nGhL~~cD~wMNl~L~~Vi~ts~ 48 (134)
T KOG3293|consen 19 LKNGETYNGHLVNCDNWMNLHLREVICTSE 48 (134)
T ss_pred ecCCCEecceeecchhhhhcchheeEEecc
Confidence 444445555566665 677788888764
No 121
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=21.20 E-value=1.1e+02 Score=19.01 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=11.2
Q ss_pred CCchhhHHHHHHHHHhhhh
Q 047411 1 MDADLCAILYFLYLISTAS 19 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (226)
|.+++-++++.++++..+.
T Consensus 1 Mqlnlg~i~l~lL~ll~~~ 19 (52)
T PF08105_consen 1 MQLNLGAIFLALLGLLALA 19 (52)
T ss_pred CcccHHHHHHHHHHHHHhc
Confidence 6777777755555444433
No 122
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=20.85 E-value=92 Score=24.58 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHhccc-CCCCCEEEecCCCeEE
Q 047411 40 ADDSMAFIKAWNNTCSA-TAKSPTMVIPKGKTFL 72 (226)
Q Consensus 40 ~ddt~aiq~Ai~~a~~~-~g~g~~v~iP~G~tY~ 72 (226)
..|.+++.++++..... .+ ...++||+| |..
T Consensus 85 ~~d~~~i~~~~~~l~~~~~~-~~lviFPEG-Tr~ 116 (193)
T cd07990 85 EKDEKTIKRQLKRLKDSPEP-FWLLIFPEG-TRF 116 (193)
T ss_pred HHhHHHHHHHHHHHhcCCCC-cEEEEeCcc-cCC
Confidence 35677888888654432 13 567999999 643
No 123
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=20.81 E-value=1.1e+02 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=25.5
Q ss_pred cceEEeeecCccCCCCcchHHHHHHHHHHhcccCCCCCEEEecCC
Q 047411 24 ADEFNVLDFGAAGDGNADDSMAFIKAWNNTCSATAKSPTMVIPKG 68 (226)
Q Consensus 24 ~~~~~v~dyGA~~dg~~ddt~aiq~Ai~~a~~~~g~g~~v~iP~G 68 (226)
+..+-|..-||-.|. +|.+.+.++|+. + |.+||+|.|
T Consensus 86 g~dlvv~SvGALaD~------~~~~~l~~~A~~-~-g~~i~ipSG 122 (267)
T PRK13301 86 GLDMIICSAGALADD------ALRARLIAAAEA-G-GARIRVPAG 122 (267)
T ss_pred CCCEEEEChhHhcCH------HHHHHHHHHHHh-C-CCEEEEeCh
Confidence 556667777776653 466666555555 4 789999999
No 124
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=20.58 E-value=2.8e+02 Score=18.73 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhcccCC
Q 047411 42 DSMAFIKAWNNTCSATA 58 (226)
Q Consensus 42 dt~aiq~Ai~~a~~~~g 58 (226)
..+.|..||+..|...+
T Consensus 16 s~e~i~~aIE~YC~~~~ 32 (74)
T PF14201_consen 16 SKEEICEAIEKYCIKNG 32 (74)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 67889999999998753
No 125
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=20.40 E-value=5.4e+02 Score=21.90 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=17.4
Q ss_pred CCEEEec-CCCeEEEe-e-----eeeeCCCcCccEEEEEee
Q 047411 60 SPTMVIP-KGKTFLVH-P-----ITFTGPCKSSDITIMLSG 93 (226)
Q Consensus 60 g~~v~iP-~G~tY~~~-~-----l~l~~~~ks~~v~l~~~g 93 (226)
+.+|.|. +| +|.+. . +.+.-+ +...++|.|+|
T Consensus 6 ~~~vtIt~~G-tY~lsGs~~~g~i~V~a~-~~~~v~lvL~g 44 (264)
T PF14262_consen 6 GSTVTITKAG-TYVLSGSLSDGQIVVDAG-DTDKVRLVLDG 44 (264)
T ss_pred CCEEEEcCCE-EEEEEEEccCcEEEEEcC-CCceEEEEECC
Confidence 5677775 57 88873 3 333211 11256776664
No 126
>PF08118 MDM31_MDM32: Yeast mitochondrial distribution and morphology (MDM) proteins ; InterPro: IPR012571 Proteins in this family are yeast mitochondrial inner membrane proteins MDM31 and MDM32. These proteins are required for the maintenance of mitochondrial morphology, and the stability of mitochondrial DNA [].; GO: 0007005 mitochondrion organization, 0005743 mitochondrial inner membrane
Probab=20.32 E-value=4e+02 Score=24.98 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=12.4
Q ss_pred ccceEEEe-ceEEeCCCc
Q 047411 118 VDSLQIDG-SGTIDGRGK 134 (226)
Q Consensus 118 ~~nv~I~G-~G~idG~G~ 134 (226)
.+++.|.| +|++|=.--
T Consensus 181 I~dv~v~GvrGvvdr~~v 198 (503)
T PF08118_consen 181 IKDVEVKGVRGVVDRTHV 198 (503)
T ss_pred eeeEEEEeeeeeEecccc
Confidence 57899999 488885543
No 127
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=20.04 E-value=91 Score=18.05 Aligned_cols=12 Identities=33% Similarity=0.359 Sum_probs=9.2
Q ss_pred CCchhhHHHHHH
Q 047411 1 MDADLCAILYFL 12 (226)
Q Consensus 1 ~~~~~~~~~~~~ 12 (226)
||.|++++++-+
T Consensus 1 mD~R~liVl~Pi 12 (36)
T PF06298_consen 1 MDWRLLIVLLPI 12 (36)
T ss_pred CCchhHHHHHHH
Confidence 899988877643
Done!