BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047417
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 258 bits (658), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 156/414 (37%), Positives = 225/414 (54%), Gaps = 40/414 (9%)
Query: 50 TTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWR 109
TT +W+FLG +P R++ ++++G +D+GIWPES SF DE P P KW+
Sbjct: 1 TTRSWDFLGFPL--TVP-----RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 110 GACQNDDHYGVECNRKLIGIRHYNKGL-ISSATKRNPAFDILPKLKTGRDLDGHGTHTLS 168
G C+ +++ CNRK+IG R Y+ G IS P RD +GHGTHT S
Sbjct: 54 GTCETSNNF--RCNRKIIGARSYHIGRPISPGDVNGP-----------RDTNGHGTHTAS 100
Query: 169 AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGND-CTEQDTIEA 227
AAG V + GTA+GG P AR+A+YKVCW ND C++ D + A
Sbjct: 101 TAAGGLVSQANLY-GLGLGTARGGVPLARIAAYKVCW-----------NDGCSDTDILAA 148
Query: 228 FDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNM 287
+DDAI DGVDII++S+G + D + IG+FHA G+LT +AGNGGP T ++
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208
Query: 288 APWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDA 347
+PW+L+V ASTMDR+F V +GN + +G S++ + YPL+SG D +
Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINT-FDNQYYPLVSGRDIPNTGFDKSTS 267
Query: 348 RSCKPGTLDRKKVQGRILVCLHEEKGYEAAKT---GAVAMITGASGTFSASYGFLPVTKL 404
R C +++ ++G+I+VC +E K+ A ++T + ++ SY LP + L
Sbjct: 268 RFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYP-LPSSVL 326
Query: 405 KIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK 458
D A L YI S + A + + T +P V SFSSRGPNR +IK
Sbjct: 327 DPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIK 379
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 219/410 (53%), Gaps = 39/410 (9%)
Query: 50 TTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWR 109
TT +FL L PS+ W + G+DVI+ +DSGIWPES SF D+ M IP +W+
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 110 GACQNDDHYGVE-CNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLS 168
G C+ + CNRKLIG ++NKG++++ +P +I + + RD DGHGTH S
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILAN----DPTVNI--TMNSARDTDGHGTHCAS 109
Query: 169 AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCT-EQDTIEA 227
AGNF + V F + GTA+G +PRAR+A YK + N+ T D I A
Sbjct: 110 ITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSF-----------NEGTFTSDLIAA 157
Query: 228 FDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNM 287
D A+ DGVD+I++S GY + D + I +F A M GVL A+AGN GP ++NN
Sbjct: 158 MDQAVADGVDMISISYGY-RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNG 216
Query: 288 APWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDA 347
+PW+L V + DR FAG +TLGN ++RG SL P +++ + I N T D
Sbjct: 217 SPWILCVASGHTDRTFAGTLTLGNGLKIRGWSL---FPARAF---VRDSPVIYNKTLSDC 270
Query: 348 RSCKPGTLDRKKVQGRILVC------LHEEKGYEAAKTGAVAMITGASGTFSASYGFLPV 401
S + + + I++C + + A+ A I+ G F ++ P
Sbjct: 271 -SSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPG 329
Query: 402 TKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNR 451
+ K+ + V++Y+K++ A +T +T +P+P VA+ S+RGP+R
Sbjct: 330 VVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSR 379
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 148 DILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYS 207
D + T D +GHGTH S AAG GA N +Y KG +P A++ KV
Sbjct: 166 DFVNGKTTPYDDNGHGTHVASIAAGT-----GAASNGKY---KGMAPGAKLVGIKVL--- 214
Query: 208 EDDHNAAHGNDCTEQDTIEAFDDAIHD----GVDIITVSLGYDKIADFLSDGVVIGAFHA 263
G+ D I D A+ + G+ +I +SLG + +D +D + +A
Sbjct: 215 -----NGQGSGSIS-DIINGVDWAVQNKDKYGIKVINLSLGSSQSSDG-TDSLSQAVNNA 267
Query: 264 TMNGVLTVAAAGNGGPEPQTINN--MAPWMLTVGA 296
G++ V AAGN GP T+ + A ++TVGA
Sbjct: 268 WDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 9/186 (4%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 210 DHNAAHGNDCTEQDTIEAFD-DAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGV 268
G + D I A D DA D ++I++SLG +L D ++I A++A G+
Sbjct: 203 AILGPDGVADKDGDGIIAGDPDA--DAAEVISMSLGGPADDSYLYD-MIIQAYNA---GI 256
Query: 269 LTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKS 328
+ VAA+GN G + P ++ VGA + A + G + P S
Sbjct: 257 VIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDS 316
Query: 329 YPLISG 334
Y + G
Sbjct: 317 YETLMG 322
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 203 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 257
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 258 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 317
Query: 330 PLISG 334
+ G
Sbjct: 318 ETLMG 322
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 140 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 199
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 200 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 254
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 255 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 314
Query: 330 PLISG 334
+ G
Sbjct: 315 ETLMG 319
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 203 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 257
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 258 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 317
Query: 330 PLISG 334
+ G
Sbjct: 318 ETLMG 322
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 63 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 123 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 177
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 178 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 237
Query: 330 PLISG 334
+ G
Sbjct: 238 ETLMG 242
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 63 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 123 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 177
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 178 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 237
Query: 330 PLISG 334
+ G
Sbjct: 238 ETLMG 242
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 63 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 122
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 123 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 177
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 178 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 237
Query: 330 PLISG 334
+ G
Sbjct: 238 ETLMG 242
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 65 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 124
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 125 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 179
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 180 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 239
Query: 330 PLISG 334
+ G
Sbjct: 240 ETLMG 244
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSED 209
KL+ D +GHGTH + AA N + VG + + + R + + E
Sbjct: 74 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 133
Query: 210 DHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVL 269
G + D I A D D ++I++SLG +L D ++I A++A G++
Sbjct: 134 AILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQAYNA---GIV 188
Query: 270 TVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSY 329
VAA+GN G + P ++ VGA + A + G + P SY
Sbjct: 189 IVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSY 248
Query: 330 PLISG 334
+ G
Sbjct: 249 ETLMG 253
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 40 VFL--NKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARF 76
+FL P LT W F GL K+ VI S +T + ARF
Sbjct: 117 IFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARF 155
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 40 VFL--NKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARF 76
+FL P LT W F GL K+ VI S +T + ARF
Sbjct: 117 IFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARF 155
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 147 FDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWY 206
+D + DL+ HGTH AA A N+ G A G +P R+ + +
Sbjct: 57 YDFVDNDYDPMDLNNHGTHVAGIAA--------AETNNATGIA-GMAPNTRILAVRAL-- 105
Query: 207 SEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMN 266
D N + T D +A A G ++I +SLG D L + V +A
Sbjct: 106 ---DRNGS----GTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAV----NYAWNK 154
Query: 267 GVLTVAAAGNGGP----EPQTINNMAPWMLTVGASTMDREFAGYVTLG 310
G + VAAAGN G EP + N ++ VGA A + G
Sbjct: 155 GSVVVAAAGNNGSSTTFEPASYEN----VIAVGAVDQYDRLASFSNYG 198
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGN 217
D +GHGTH AG + G+ YG A P A + +YKV D + + +
Sbjct: 67 DRNGHGTHV----AGTALADGGSDQAGIYGVA----PDADLWAYKVLL----DSGSGYSD 114
Query: 218 DCTEQDTIEAFDDAIHDGVD-IITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGN 276
D A D A G II++SLG +S V +A GVL VAAAGN
Sbjct: 115 DIAAA-IRHAADQATATGTKTIISMSLGSSANNSLISSAV----NYAYSKGVLIVAAAGN 169
Query: 277 GGPEPQTI 284
G TI
Sbjct: 170 SGYSQGTI 177
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGN 217
D +GHGTH AG + G+ YG A P A + +YKV D + + +
Sbjct: 67 DRNGHGTHV----AGTALADGGSDQAGIYGVA----PDADLWAYKVLL----DSGSGYSD 114
Query: 218 DCTEQDTIEAFDDAIHDGVD-IITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGN 276
D A D A G II++SLG +S V +A GVL VAAAGN
Sbjct: 115 DIAAA-IRHAADQATATGTKTIISMSLGSSANNSLISSAV----NYAYSKGVLIVAAAGN 169
Query: 277 GGPEPQTI 284
G TI
Sbjct: 170 SGYSQGTI 177
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGND 218
+ HGTH S G V G +P+ R V +S+D
Sbjct: 58 MSAHGTHVASIIFGQPETSV-----------PGIAPQCR--GLIVPIFSDDRRR------ 98
Query: 219 CTEQDTIEAFDDAIHDGVDIITVSLGYDKIADF-LSDGVVIGAFH-ATMNGVLTVAAAGN 276
T+ D + A++ G II +S G ++ DF +DG + A N VL VAAAGN
Sbjct: 99 ITQLDLARGIERAVNAGAHIINISGG--ELTDFGEADGWLENAVSLCRQNNVLLVAAAGN 156
Query: 277 GGPEPQTINNMAPWMLTVGA 296
G + + P +L VGA
Sbjct: 157 NGCDCLHVPAALPAVLAVGA 176
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 23/140 (16%)
Query: 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGND 218
+ HGTH S G V G +P+ R V +S+D
Sbjct: 67 MSAHGTHVASIIFGQPETSV-----------PGIAPQCR--GLIVPIFSDDRRR------ 107
Query: 219 CTEQDTIEAFDDAIHDGVDIITVSLGYDKIADF-LSDGVVIGAFH-ATMNGVLTVAAAGN 276
T+ D + A++ G II +S G ++ DF +DG + A N VL VAAAGN
Sbjct: 108 ITQLDLARGIERAVNAGAHIINISGG--ELTDFGEADGWLENAVSLCRQNNVLLVAAAGN 165
Query: 277 GGPEPQTINNMAPWMLTVGA 296
G + + P +L VGA
Sbjct: 166 NGCDCLHVPAALPAVLAVGA 185
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 27/132 (20%)
Query: 158 DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGN 217
D GHGTH +A N G + YG A P A + +YKV D + + +
Sbjct: 67 DRQGHGTHVAGSALAN-----GGTGSGVYGVA----PEADLWAYKVL----GDDGSGYAD 113
Query: 218 DCTEQ-----DTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVA 272
D E D A + + +I +SLG + +++ V +A GVL +A
Sbjct: 114 DIAEAIRHAGDQATALNTKV-----VINMSLGSSGESSLITNAV----DYAYDKGVLIIA 164
Query: 273 AAGNGGPEPQTI 284
AAGN GP+P +I
Sbjct: 165 AAGNSGPKPGSI 176
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 220 TEQDTIEAFDDAIHDGVDIITVSLGYDKIADF-LSDGVVIGAFH-ATMNGVLTVAAAGNG 277
T+ D + A++ G II +S G ++ DF +DG + A N VL VAAAGN
Sbjct: 90 TQLDLARGIERAVNAGAHIINISGG--ELTDFGEADGWLENAVSLCRQNNVLLVAAAGNN 147
Query: 278 GPEPQTINNMAPWMLTVGA 296
G + + P +L VGA
Sbjct: 148 GCDCLHVPAALPAVLAVGA 166
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 19/191 (9%)
Query: 152 KLKTGRDLDGHGTHTLS--AAAGNFVQYVGA-----FCNHRYGTAKGGSPRARVA-SYKV 203
KL+ D +GHGTH + AA N + VG + R A+G + +A +
Sbjct: 143 KLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 202
Query: 204 CWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHA 263
D G+ D DDA ++I++SLG +L D ++I A++A
Sbjct: 203 AILGPDGVADKDGDGIIAGDP----DDA---AAEVISMSLGGPADDSYLYD-MIIQAYNA 254
Query: 264 TMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSID 323
G++ VAA+GN G + P ++ VGA + A + G +
Sbjct: 255 ---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILST 311
Query: 324 MPRKSYPLISG 334
P SY + G
Sbjct: 312 YPDDSYETLMG 322
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 27/195 (13%)
Query: 152 KLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVC------W 205
KL+ D +GHGTH + A N+ G G +P ++ S +V
Sbjct: 74 KLRDCADQNGHGTHVIGTIAA---------LNNDIGVV-GVAPGVQIYSVRVLDARGSGS 123
Query: 206 YSEDDHNAAH---GNDCT---EQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIG 259
YS+ A G D + D I A D D ++I++SLG +L D ++I
Sbjct: 124 YSDIAIGIAQAILGPDGVADKDGDGIIAGDPD-DDAAEVISMSLGGPADDSYLYD-MIIQ 181
Query: 260 AFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGAS 319
A++A G++ VAA+GN G + P ++ VGA + A + G
Sbjct: 182 AYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVD 238
Query: 320 LSIDMPRKSYPLISG 334
+ P SY + G
Sbjct: 239 ILSTYPDDSYETLMG 253
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 13 RRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWE 72
+R++N F + Q + P + + ++ P LT AW GL K VI S +
Sbjct: 112 QRNVNVFKFII----PQIVKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLD 167
Query: 73 RARF 76
ARF
Sbjct: 168 SARF 171
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 35 PEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARF 76
P + + ++ P LT AW GL ++ VI S + + ARF
Sbjct: 129 PNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARF 170
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 13 RRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWE 72
+R++N F + Q + P+ + + ++ P LT W GL K VI S +
Sbjct: 111 QRNVNVFKFII----PQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLD 166
Query: 73 RARF 76
ARF
Sbjct: 167 SARF 170
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 13 RRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWE 72
+R++N F + Q + P+ + + ++ P LT W GL K VI S +
Sbjct: 111 QRNVNVFKFII----PQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLD 166
Query: 73 RARF 76
ARF
Sbjct: 167 SARF 170
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 220 TEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGP 279
++ D A + A+++G +II VS G A + N VL +AA GN G
Sbjct: 103 SQLDLSRAIEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGC 162
Query: 280 EPQTINNMAPWMLTVGA 296
E + P +L VGA
Sbjct: 163 ECLHVPASLPTVLAVGA 179
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 225 IEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG--PEPQ 282
+ + A +G+D+I +SLG + L V A +G++ VAAAGN G
Sbjct: 107 VSGIEWATQNGLDVINMSLGGPSGSTALKQAV----DKAYASGIVVVAAAGNSGNSGSQN 162
Query: 283 TINNMAPW--MLTVGASTMDREFAGYVTLGNNKRLR--GASLSIDMPRKSYPLISG 334
TI A + ++ VGA ++ A + ++G+ + G S+ P +Y ++G
Sbjct: 163 TIGYPAKYDSVIAVGAVDSNKNRASFSSVGSELEVMAPGVSVYSTYPSNTYTSLNG 218
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 26/144 (18%)
Query: 162 HGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTE 221
HGTH S A+GN H G +P A++ S + + G+ T
Sbjct: 272 HGTHVSSIASGN----------HSSRDVDGVAPNAKIVSXTIG-------DGRLGSXETG 314
Query: 222 QDTIEA---FDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMN--GVLTVAAAGN 276
+ A + DG I ++ Y + A++ + G + + +N GV+ VA+AGN
Sbjct: 315 TALVRAXTKVXELCRDGRRIDVINXSYGEHANWSNSGRIGELXNEVVNKYGVVWVASAGN 374
Query: 277 GGPEPQTINN----MAPWMLTVGA 296
GP T+ P ++ VGA
Sbjct: 375 HGPALCTVGTPPDISQPSLIGVGA 398
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 38/162 (23%)
Query: 132 YNKGLISSATK---------RNPAFDI------LPKLKTGRDLDGHGTHTLSAAAGNFVQ 176
+N+GL S K +P +I +P + +D +GHGTH AG
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHV----AGTI-- 70
Query: 177 YVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236
A N+ G G +P A + + KV A G + + A ++G+
Sbjct: 71 ---AALNNSIGV-LGVAPSAELYAVKVL--------GADGRGAIS-SIAQGLEWAGNNGM 117
Query: 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG 278
+ +SLG + L V AT GVL VAA+GN G
Sbjct: 118 HVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSG 155
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 35 PEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARF----GEDVIIGGIDSGIW 90
P+ + + ++ P LT AW GL +I S + ARF GE + + W
Sbjct: 130 PDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGW 189
Query: 91 PESESFSDEEMGPIPSKWRG 110
E +PS W G
Sbjct: 190 -----VIGEHGDSVPSVWSG 204
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 35 PEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARF----GEDVIIGGIDSGIW 90
P+ + + ++ P LT AW GL +I S + ARF GE + + W
Sbjct: 129 PDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGW 188
Query: 91 PESESFSDEEMGPIPSKWRG 110
E +PS W G
Sbjct: 189 -----VIGEHGDSVPSVWSG 203
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 38/162 (23%)
Query: 132 YNKGLISSATK---------RNPAFDI------LPKLKTGRDLDGHGTHTLSAAAGNFVQ 176
+N+GL S K +P +I +P + +D +GHGTH AG
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHV----AGTI-- 70
Query: 177 YVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236
A N+ G G +P A + + KV S + + + A ++G+
Sbjct: 71 ---AALNNSIGV-LGVAPNAELYAVKVLGASGS---------GSVSSIAQGLEWAGNNGM 117
Query: 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG 278
+ +SLG + L V AT GVL VAA+GN G
Sbjct: 118 HVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 38/162 (23%)
Query: 132 YNKGLISSATK---------RNPAFDI------LPKLKTGRDLDGHGTHTLSAAAGNFVQ 176
+N+GL S K +P +I +P + +D +GHGTH AG
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHV----AGTI-- 70
Query: 177 YVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236
A N+ G G +P A + + KV S + + + A ++G+
Sbjct: 71 ---AALNNSIGV-LGVAPNAELYAVKVLGASGG---------GSNSSIAQGLEWAGNNGM 117
Query: 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG 278
+ +SLG + L V AT GVL VAA+GN G
Sbjct: 118 HVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSG 155
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 38/162 (23%)
Query: 132 YNKGLISSATK---------RNPAFDI------LPKLKTGRDLDGHGTHTLSAAAGNFVQ 176
+N+GL S K +P +I +P + +D +GHGTH AG
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHV----AGTI-- 70
Query: 177 YVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236
A N+ G G +P A + + KV S + + + A ++G+
Sbjct: 71 ---AALNNSIGV-LGVAPNAELYAVKVLGASGS---------GSVSSIAQGLEWAGNNGM 117
Query: 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG 278
+ +SLG + L V AT GVL VAA+GN G
Sbjct: 118 HVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 38/162 (23%)
Query: 132 YNKGLISSATK---------RNPAFDI------LPKLKTGRDLDGHGTHTLSAAAGNFVQ 176
+N+GL S K +P +I +P + +D +GHGTH AG
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHV----AGTI-- 70
Query: 177 YVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236
A N+ G G +P A + + KV S + + + A ++G+
Sbjct: 71 ---AALNNSIGV-LGVAPSAELYAVKVLGASGS---------GSVSSIAQGLEWAGNNGM 117
Query: 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG 278
+ +SLG + L V AT GVL VAA+GN G
Sbjct: 118 HVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSG 155
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 38/162 (23%)
Query: 132 YNKGLISSATK---------RNPAFDI------LPKLKTGRDLDGHGTHTLSAAAGNFVQ 176
+N+GL S K +P +I +P + +D +GHGTH AG
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHV----AGTI-- 70
Query: 177 YVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236
A N+ G G +P A + + KV S + + + A ++G+
Sbjct: 71 ---AALNNSIGV-LGVAPSAELYAVKVLGASGS---------GSVSSIAQGLEWAGNNGM 117
Query: 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG 278
+ +SLG + L V AT GVL VAA+GN G
Sbjct: 118 HVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 42/164 (25%)
Query: 132 YNKGLISSATK---------RNPAFDI------LPKLKTGRDLDGHGTHTLS--AAAGNF 174
+N+GL S K +P +I +P + +D +GHGTH AA N
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALDNS 76
Query: 175 VQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHD 234
+ +G +P A + + KV A G+ + + A ++
Sbjct: 77 IGVLGV------------APSAELYAVKVL--------GASGSGAIS-SIAQGLEWAGNN 115
Query: 235 GVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGG 278
G+ + +SLG + L V AT GVL VAA+GN G
Sbjct: 116 GMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSG 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,527,472
Number of Sequences: 62578
Number of extensions: 651503
Number of successful extensions: 1724
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1665
Number of HSP's gapped (non-prelim): 96
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)