Query 047417
Match_columns 458
No_of_seqs 292 out of 2323
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.9E-38 4.2E-43 315.5 23.6 234 46-298 1-235 (307)
2 PTZ00262 subtilisin-like prote 100.0 8E-33 1.7E-37 289.3 20.2 192 67-300 303-514 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 7.2E-33 1.6E-37 268.1 17.1 173 71-312 1-175 (255)
4 cd07476 Peptidases_S8_thiazoli 100.0 3.1E-32 6.8E-37 265.1 18.9 181 70-311 2-182 (267)
5 cd07491 Peptidases_S8_7 Peptid 100.0 3.5E-31 7.6E-36 254.8 16.9 181 77-315 2-187 (247)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 3.1E-30 6.7E-35 260.8 20.5 200 69-298 1-223 (346)
7 cd07485 Peptidases_S8_Fervidol 100.0 4E-30 8.6E-35 251.6 20.3 205 69-317 1-212 (273)
8 cd07483 Peptidases_S8_Subtilis 100.0 3E-30 6.6E-35 254.6 19.0 208 78-311 1-229 (291)
9 cd07484 Peptidases_S8_Thermita 100.0 1.2E-29 2.7E-34 246.3 20.6 184 67-315 18-201 (260)
10 cd07497 Peptidases_S8_14 Pepti 100.0 4.5E-30 9.8E-35 254.6 16.8 187 77-300 1-203 (311)
11 cd05561 Peptidases_S8_4 Peptid 100.0 1E-29 2.2E-34 243.9 18.4 168 80-315 1-169 (239)
12 cd07489 Peptidases_S8_5 Peptid 100.0 1.6E-29 3.4E-34 252.1 20.0 183 68-298 3-188 (312)
13 cd07481 Peptidases_S8_Bacillop 100.0 2.3E-29 5E-34 245.0 19.2 182 77-313 1-197 (264)
14 cd07496 Peptidases_S8_13 Pepti 100.0 5.3E-29 1.2E-33 245.2 18.0 139 155-315 66-215 (285)
15 cd07493 Peptidases_S8_9 Peptid 100.0 7E-29 1.5E-33 241.3 17.6 181 79-312 1-195 (261)
16 cd04077 Peptidases_S8_PCSK9_Pr 100.0 8.1E-29 1.8E-33 239.9 17.9 172 70-314 17-194 (255)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.2E-28 2.5E-33 239.6 18.9 178 77-311 1-188 (264)
18 cd07490 Peptidases_S8_6 Peptid 100.0 2.1E-28 4.5E-33 236.8 18.5 172 79-312 1-173 (254)
19 cd07498 Peptidases_S8_15 Pepti 100.0 2.3E-28 4.9E-33 234.9 18.1 177 80-315 1-178 (242)
20 cd05562 Peptidases_S53_like Pe 100.0 1.8E-28 3.9E-33 239.5 17.1 164 74-309 1-166 (275)
21 cd07477 Peptidases_S8_Subtilis 100.0 3E-28 6.6E-33 231.8 18.2 172 79-315 1-174 (229)
22 cd07494 Peptidases_S8_10 Pepti 100.0 3.9E-28 8.4E-33 239.9 15.6 158 65-299 8-174 (298)
23 cd07482 Peptidases_S8_Lantibio 100.0 1.1E-27 2.4E-32 236.4 17.2 137 154-312 47-212 (294)
24 KOG1153 Subtilisin-related pro 100.0 2.6E-28 5.7E-33 239.8 12.1 232 15-320 145-398 (501)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 1.1E-27 2.5E-32 236.4 16.3 179 73-302 2-185 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 2.4E-27 5.3E-32 234.7 17.9 168 73-303 3-202 (297)
27 cd07473 Peptidases_S8_Subtilis 99.9 6.2E-27 1.3E-31 227.1 19.4 190 78-311 2-197 (259)
28 cd04843 Peptidases_S8_11 Pepti 99.9 1.6E-27 3.4E-32 233.1 15.1 180 66-317 3-207 (277)
29 cd07474 Peptidases_S8_subtilis 99.9 8.6E-27 1.9E-31 230.4 19.3 180 77-298 1-182 (295)
30 cd04059 Peptidases_S8_Protein_ 99.9 3.2E-27 6.9E-32 233.7 13.2 192 65-316 26-231 (297)
31 cd07492 Peptidases_S8_8 Peptid 99.9 2.1E-26 4.5E-31 218.5 16.9 156 79-303 1-156 (222)
32 cd04857 Peptidases_S8_Tripepti 99.9 8.3E-26 1.8E-30 229.2 21.2 127 157-300 182-312 (412)
33 cd07478 Peptidases_S8_CspA-lik 99.9 1.9E-26 4.2E-31 239.8 15.4 188 75-282 1-198 (455)
34 cd04848 Peptidases_S8_Autotran 99.9 1E-25 2.2E-30 218.7 17.2 178 76-310 1-200 (267)
35 cd04847 Peptidases_S8_Subtilis 99.9 4.2E-26 9.1E-31 225.2 13.9 175 81-312 2-193 (291)
36 PF00082 Peptidase_S8: Subtila 99.9 2.9E-24 6.2E-29 210.5 12.9 177 81-310 1-184 (282)
37 KOG4266 Subtilisin kexin isozy 99.9 2.2E-24 4.8E-29 218.0 9.9 214 27-310 113-365 (1033)
38 cd00306 Peptidases_S8_S53 Pept 99.9 1E-20 2.2E-25 179.4 18.6 129 155-304 39-172 (241)
39 cd07488 Peptidases_S8_2 Peptid 99.8 1.3E-18 2.8E-23 167.3 9.6 122 156-306 33-167 (247)
40 COG1404 AprE Subtilisin-like s 99.7 5.3E-17 1.2E-21 170.2 15.4 188 67-312 129-327 (508)
41 KOG1114 Tripeptidyl peptidase 99.6 8.7E-16 1.9E-20 162.4 11.6 126 159-300 309-437 (1304)
42 cd02133 PA_C5a_like PA_C5a_lik 99.6 1.2E-14 2.6E-19 128.3 9.8 108 326-451 25-142 (143)
43 cd02120 PA_subtilisin_like PA_ 99.4 8.5E-13 1.8E-17 113.8 11.7 114 307-426 2-126 (126)
44 KOG3526 Subtilisin-like propro 99.4 4.7E-13 1E-17 129.7 9.8 176 66-301 149-340 (629)
45 cd04816 PA_SaNapH_like PA_SaNa 99.2 5.6E-11 1.2E-15 102.0 9.2 90 328-425 18-121 (122)
46 cd04056 Peptidases_S53 Peptida 99.2 5.9E-11 1.3E-15 120.7 9.9 103 188-303 82-200 (361)
47 cd02122 PA_GRAIL_like PA _GRAI 99.1 3.1E-10 6.6E-15 99.2 9.6 82 345-426 42-138 (138)
48 cd02129 PA_hSPPL_like PA_hSPPL 99.1 2.2E-10 4.7E-15 97.1 8.2 83 327-419 20-115 (120)
49 cd02130 PA_ScAPY_like PA_ScAPY 99.1 6E-10 1.3E-14 95.6 10.6 78 348-426 32-122 (122)
50 PF02225 PA: PA domain; Inter 99.1 6.3E-11 1.4E-15 97.8 4.1 70 347-416 19-101 (101)
51 cd02127 PA_hPAP21_like PA_hPAP 99.1 5.9E-10 1.3E-14 94.8 9.5 80 347-427 21-117 (118)
52 cd02124 PA_PoS1_like PA_PoS1_l 99.1 9.2E-10 2E-14 95.1 9.6 91 329-425 28-128 (129)
53 cd04818 PA_subtilisin_1 PA_sub 99.0 7.6E-10 1.7E-14 94.4 8.7 80 345-425 25-117 (118)
54 cd02132 PA_GO-like PA_GO-like: 99.0 8.3E-10 1.8E-14 96.9 8.9 76 347-425 48-138 (139)
55 cd02125 PA_VSR PA_VSR: Proteas 99.0 1.3E-09 2.7E-14 94.0 8.6 79 347-425 22-126 (127)
56 cd00538 PA PA: Protease-associ 99.0 1.1E-09 2.3E-14 94.1 8.0 80 346-425 29-125 (126)
57 cd02126 PA_EDEM3_like PA_EDEM3 99.0 1.3E-09 2.8E-14 94.0 8.2 78 347-425 27-125 (126)
58 cd04817 PA_VapT_like PA_VapT_l 98.9 2.9E-09 6.2E-14 92.8 7.9 65 355-419 50-134 (139)
59 cd04819 PA_2 PA_2: Protease-as 98.9 1.2E-08 2.5E-13 88.2 10.4 84 326-422 22-123 (127)
60 cd04813 PA_1 PA_1: Protease-as 98.9 4.9E-09 1.1E-13 89.0 7.3 72 345-418 25-111 (117)
61 cd02123 PA_C_RZF_like PA_C-RZF 98.8 1.8E-08 3.9E-13 89.8 8.5 75 347-421 50-142 (153)
62 PF05922 Inhibitor_I9: Peptida 98.3 1.4E-06 3.1E-11 68.8 5.2 46 4-49 37-82 (82)
63 cd04815 PA_M28_2 PA_M28_2: Pro 98.2 3.1E-06 6.6E-11 73.8 7.4 70 356-425 34-133 (134)
64 cd02128 PA_TfR PA_TfR: Proteas 98.0 7.9E-06 1.7E-10 74.3 5.3 63 357-419 51-156 (183)
65 cd04822 PA_M28_1_3 PA_M28_1_3: 97.7 0.00022 4.8E-09 63.1 8.5 83 328-417 21-133 (151)
66 cd02121 PA_GCPII_like PA_GCPII 97.5 0.00016 3.4E-09 68.1 6.2 30 357-386 67-101 (220)
67 cd04820 PA_M28_1_1 PA_M28_1_1: 97.4 0.00024 5.1E-09 61.8 5.4 56 327-389 22-95 (137)
68 KOG2442 Uncharacterized conser 97.4 0.00049 1.1E-08 70.1 8.0 82 345-429 82-178 (541)
69 cd04814 PA_M28_1 PA_M28_1: Pro 97.3 0.00037 7.9E-09 61.0 5.6 83 326-415 19-134 (142)
70 KOG3525 Subtilisin-like propro 96.8 0.0017 3.6E-08 67.5 5.7 158 67-281 22-188 (431)
71 cd02131 PA_hNAALADL2_like PA_h 96.8 0.0013 2.9E-08 57.6 3.9 29 358-386 37-70 (153)
72 KOG3920 Uncharacterized conser 96.1 0.0052 1.1E-07 53.6 3.4 85 344-429 71-174 (193)
73 COG4934 Predicted protease [Po 96.1 0.015 3.2E-07 65.9 7.8 93 191-296 290-395 (1174)
74 cd04821 PA_M28_1_2 PA_M28_1_2: 95.9 0.019 4.1E-07 51.3 6.0 54 326-386 21-98 (157)
75 KOG4628 Predicted E3 ubiquitin 95.8 0.02 4.4E-07 57.1 6.4 74 346-419 61-150 (348)
76 PF08260 Kinin: Insect kinin p 89.0 0.17 3.7E-06 21.7 0.4 6 443-448 3-8 (8)
77 KOG1114 Tripeptidyl peptidase 88.0 0.35 7.5E-06 53.6 2.7 44 233-276 334-379 (1304)
78 cd07497 Peptidases_S8_14 Pepti 61.0 4.7 0.0001 40.2 1.7 21 437-457 217-240 (311)
79 cd07478 Peptidases_S8_CspA-lik 36.8 17 0.00036 38.4 1.2 20 438-457 356-378 (455)
80 COG4882 Predicted aminopeptida 31.9 82 0.0018 32.0 5.0 56 358-413 86-160 (486)
81 PF08821 CGGC: CGGC domain; I 31.4 3E+02 0.0065 22.8 7.6 73 188-272 29-104 (107)
82 KOG2018 Predicted dinucleotide 31.0 1E+02 0.0022 30.8 5.4 88 189-277 137-247 (430)
83 cd04857 Peptidases_S8_Tripepti 27.0 27 0.00059 36.3 0.8 31 68-98 11-43 (412)
84 cd04847 Peptidases_S8_Subtilis 24.9 32 0.00069 33.6 0.8 15 443-457 200-217 (291)
85 PRK10949 protease 4; Provision 24.9 2.2E+02 0.0048 31.3 7.4 63 218-280 346-409 (618)
86 COG2876 AroA 3-deoxy-D-arabino 24.8 1.8E+02 0.004 28.3 5.8 78 219-298 56-138 (286)
87 TIGR00520 asnASE_II L-asparagi 24.1 1.9E+02 0.004 29.4 6.2 43 229-275 256-299 (349)
88 cd00411 Asparaginase Asparagin 23.4 2E+02 0.0043 28.8 6.2 43 228-274 226-269 (323)
89 smart00870 Asparaginase Aspara 22.5 2.1E+02 0.0045 28.6 6.2 44 228-275 228-272 (323)
90 cd07475 Peptidases_S8_C5a_Pept 21.9 47 0.001 33.2 1.4 22 436-457 229-253 (346)
91 KOG2195 Transferrin receptor a 20.8 80 0.0017 35.2 3.0 29 358-386 181-214 (702)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-38 Score=315.51 Aligned_cols=234 Identities=44% Similarity=0.724 Sum_probs=195.5
Q ss_pred cccCCCCCCcccCCCcCCCCCChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCC-ccCCc
Q 047417 46 TKKLTTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYG-VECNR 124 (458)
Q Consensus 46 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~-~~~n~ 124 (458)
++++++++++++++...- ...+|.++++|+||+|||||||||++||+|++....+++..|.+.|..+..+. .++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 467888999999987432 11257779999999999999999999999999888888999999999888776 67999
Q ss_pred eeeeeEecCCCccccccCCCCCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEee
Q 047417 125 KLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVC 204 (458)
Q Consensus 125 k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~ 204 (458)
|+++.++|..++. ...+ .+...+..++.|..||||||||||||+...+....| ...+.+.||||+|+|+.+|++
T Consensus 78 ki~g~~~~~~~~~--~~~~---~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~-~~~~~~~GvAP~a~l~~~kv~ 151 (307)
T cd04852 78 KLIGARYFSDGYD--AYGG---FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGG-FAFGTASGVAPRARIAVYKVC 151 (307)
T ss_pred eEEEEEEcccchh--hccC---cccccCCCCCccCCCCchhhhhhhcCCCcccccccc-cccccEEEECCCCeEEEEEEe
Confidence 9999999987654 1111 122334567789999999999999998765544444 555678999999999999999
Q ss_pred cCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc
Q 047417 205 WYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTI 284 (458)
Q Consensus 205 ~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~ 284 (458)
+.. +.+..+++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|+...+.
T Consensus 152 ~~~---------~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~ 221 (307)
T cd04852 152 WPD---------GGCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTV 221 (307)
T ss_pred cCC---------CCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcc
Confidence 874 26889999999999999999999999999732 44667888888999999999999999999888888
Q ss_pred ccCCCccEEecccc
Q 047417 285 NNMAPWMLTVGAST 298 (458)
Q Consensus 285 ~~~a~~vitVgA~~ 298 (458)
++.+|++|+|||++
T Consensus 222 ~~~~~~vi~Vga~~ 235 (307)
T cd04852 222 PNVAPWVTTVAAST 235 (307)
T ss_pred cCCCCCeEEEEecc
Confidence 88999999999987
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=8e-33 Score=289.28 Aligned_cols=192 Identities=19% Similarity=0.058 Sum_probs=135.6
Q ss_pred Chhhhc--cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCC
Q 047417 67 SNSTWE--RARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRN 144 (458)
Q Consensus 67 ~~~~~~--~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~ 144 (458)
++++|. .+.+|+||+|||||||||++||+|+++-... .....|.. .+ +..++.. .+ ..+|
T Consensus 303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----gi-DdD~nG~------vd-----d~~G- 364 (639)
T PTZ00262 303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GI-DDDNNGN------VD-----DEYG- 364 (639)
T ss_pred chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----cc-ccccCCc------cc-----cccc-
Confidence 456665 4678999999999999999999998651000 00000100 00 0000000 00 0011
Q ss_pred CCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHH
Q 047417 145 PAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDT 224 (458)
Q Consensus 145 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i 224 (458)
++...+...|.|.+||||||||||||... +...+.||||+|+|+++|+|+.. +.+..+++
T Consensus 365 --~nfVd~~~~P~D~~GHGTHVAGIIAA~gn---------N~~Gi~GVAP~AkLi~vKVld~~---------G~G~~sdI 424 (639)
T PTZ00262 365 --ANFVNNDGGPMDDNYHGTHVSGIISAIGN---------NNIGIVGVDKRSKLIICKALDSH---------KLGRLGDM 424 (639)
T ss_pred --ccccCCCCCCCCCCCcchHHHHHHhcccc---------CCCceeeeecccccceEEEecCC---------CCccHHHH
Confidence 12222234678999999999999998732 22347899999999999999876 25788999
Q ss_pred HHHHHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC--------------Cccc----
Q 047417 225 IEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQ--------------TINN---- 286 (458)
Q Consensus 225 ~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--------------~~~~---- 286 (458)
++||+||++.|++|||||||.. .....+..++.+|.++|++||+||||+|+... .+|+
T Consensus 425 ~~AI~yA~~~GA~VINmSlG~~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 425 FKCFDYCISREAHMINGSFSFD----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHCCCCEEEeccccC----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 9999999999999999999986 34557888999999999999999999986421 1333
Q ss_pred CCCccEEecccccC
Q 047417 287 MAPWMLTVGASTMD 300 (458)
Q Consensus 287 ~a~~vitVgA~~~~ 300 (458)
..++||+|||++.+
T Consensus 501 ~~~nVIaVGAv~~d 514 (639)
T PTZ00262 501 KLRNVITVSNLIKD 514 (639)
T ss_pred cCCCEEEEeeccCC
Confidence 25789999998764
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=7.2e-33 Score=268.08 Aligned_cols=173 Identities=24% Similarity=0.321 Sum_probs=140.0
Q ss_pred hccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCC
Q 047417 71 WERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDIL 150 (458)
Q Consensus 71 ~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (458)
|+++++|+||+|||||||||.+||+|++. +...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 88999999999999999999999999732 00011111
Q ss_pred CCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHH
Q 047417 151 PKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDD 230 (458)
Q Consensus 151 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~ 230 (458)
.....|..||||||||||+|+. ....||||+|+|+.+|+|.+.. .+..++++++|+|
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~------------~~~~GvAp~a~l~~~~v~~~~~---------~~~~~~~~~a~~~ 94 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSR------------EQCLGFAPDAEIYIFRVFTNNQ---------VSYTSWFLDAFNY 94 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccC------------CCceeECCCCEEEEEEeecCCC---------CchHHHHHHHHHh
Confidence 1134577899999999999872 1257899999999999998762 4677889999999
Q ss_pred HHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cccCCCccEEecccccCcceeeeEE
Q 047417 231 AIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQT--INNMAPWMLTVGASTMDREFAGYVT 308 (458)
Q Consensus 231 a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~a~~vitVgA~~~~~~~~~~~~ 308 (458)
|++.+++|||||||.+. +...++.+++.++.++|++||+||||+|+...+ .++..++||+|||++.++.++.|++
T Consensus 95 a~~~~~~Vin~S~G~~~---~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~ 171 (255)
T cd07479 95 AILTKIDVLNLSIGGPD---FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFDDNIARFSS 171 (255)
T ss_pred hhhcCCCEEEeeccCCC---CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccCCccccccC
Confidence 99999999999999862 345667778888999999999999999986554 4556789999999999888888888
Q ss_pred eCCc
Q 047417 309 LGNN 312 (458)
Q Consensus 309 ~g~~ 312 (458)
+|..
T Consensus 172 ~g~~ 175 (255)
T cd07479 172 RGMT 175 (255)
T ss_pred CCCC
Confidence 7643
No 4
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=3.1e-32 Score=265.08 Aligned_cols=181 Identities=22% Similarity=0.233 Sum_probs=144.9
Q ss_pred hhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCC
Q 047417 70 TWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDI 149 (458)
Q Consensus 70 ~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~ 149 (458)
+|..+++|+||+|||||+|||.+||+|++..+.+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCccc---------------
Confidence 79999999999999999999999999986421110 00000
Q ss_pred CCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHH
Q 047417 150 LPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFD 229 (458)
Q Consensus 150 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~ 229 (458)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++..... .++.+++++||+
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~~--------~~~~~~i~~ai~ 100 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDRR--------GCSQLDLARAIN 100 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCCC--------CCCHHHHHHHHH
Confidence 012345678999999999998721 13689999999999999987632 345789999999
Q ss_pred HHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEecccccCcceeeeEEe
Q 047417 230 DAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTL 309 (458)
Q Consensus 230 ~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~ 309 (458)
||+++|++|||||||...........+.+++..|.++|++||+||||+|.....+|+..+++|+|||++.++....++++
T Consensus 101 ~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~~~~~~~s~~ 180 (267)
T cd07476 101 LALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDDGLPLKFSNW 180 (267)
T ss_pred HHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCCCCeeeecCC
Confidence 99999999999999986333345667888999999999999999999998877888889999999999888777777776
Q ss_pred CC
Q 047417 310 GN 311 (458)
Q Consensus 310 g~ 311 (458)
|.
T Consensus 181 g~ 182 (267)
T cd07476 181 GA 182 (267)
T ss_pred CC
Confidence 64
No 5
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=3.5e-31 Score=254.77 Aligned_cols=181 Identities=20% Similarity=0.148 Sum_probs=134.9
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCC
Q 047417 77 GEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTG 156 (458)
Q Consensus 77 G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (458)
+++|+|||||||||.+||+|+++ +...++|..... +........
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~----------~~~~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEG----------DGNKVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCC----------CcccCCCCC
Confidence 78999999999999999999854 112222322111 000011223
Q ss_pred CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC
Q 047417 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236 (458)
Q Consensus 157 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~ 236 (458)
.|..||||||||||+| +||+|+|+.+|++....... . ...++...+++||+||+++|+
T Consensus 46 ~d~~gHGT~vAgiI~g-------------------vap~a~i~~~kv~~~~~~~~-~--~~~~~~~~i~~Ai~~Ai~~ga 103 (247)
T cd07491 46 VSADGHGTAMARMICR-------------------ICPSAKLYVIKLEDRPSPDS-N--KRSITPQSAAKAIEAAVEKKV 103 (247)
T ss_pred CCCCCcHHHHHHHHHH-------------------HCCCCeEEEEEecccCCCCC-c--ccccCHHHHHHHHHHHHHCCC
Confidence 4788999999999983 89999999999998763100 0 013567899999999999999
Q ss_pred cEEEecccCCCCC--CCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC-Cc--ccCCCccEEecccccCcceeeeEEeCC
Q 047417 237 DIITVSLGYDKIA--DFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQ-TI--NNMAPWMLTVGASTMDREFAGYVTLGN 311 (458)
Q Consensus 237 ~VIn~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~a~~vitVgA~~~~~~~~~~~~~g~ 311 (458)
||||||||..... ......+.+++.+|.++|++||+||||+|.+.. .+ ++..++||+|||++.++.+..+++++.
T Consensus 104 dIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g~~~~~S~~g~ 183 (247)
T cd07491 104 DIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDGGADAPVGDED 183 (247)
T ss_pred cEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCCCCccccCCCC
Confidence 9999999987221 113577888999999999999999999997754 44 346799999999999988888887776
Q ss_pred ceEE
Q 047417 312 NKRL 315 (458)
Q Consensus 312 ~~~~ 315 (458)
...+
T Consensus 184 ~vd~ 187 (247)
T cd07491 184 RVDY 187 (247)
T ss_pred cceE
Confidence 6544
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.97 E-value=3.1e-30 Score=260.76 Aligned_cols=200 Identities=26% Similarity=0.279 Sum_probs=149.3
Q ss_pred hhhccCC-CCCCcEEEEeccCCCCCCCCCCCCCCCCCCC-----cccccccCCCCCCccCCceeeeeEecCCCccccccC
Q 047417 69 STWERAR-FGEDVIIGGIDSGIWPESESFSDEEMGPIPS-----KWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATK 142 (458)
Q Consensus 69 ~~~~~~~-~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~ 142 (458)
.+|+++. +|+||+|||||||||++||+|++....+... .+...+.. .+..+.+.+++..++|.+...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----- 73 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNND----- 73 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCCC-----
Confidence 3788877 9999999999999999999998764332111 11111111 222467788888888876533
Q ss_pred CCCCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecC-CCCCcCCCCCCCCCH
Q 047417 143 RNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWY-SEDDHNAAHGNDCTE 221 (458)
Q Consensus 143 g~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~-~~~~~~~~~g~~~~~ 221 (458)
+.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. .. .....
T Consensus 74 ---------~~~~~~~~~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~--------~~~~~ 130 (346)
T cd07475 74 ---------DILDEDDGSSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEG--------GSTYD 130 (346)
T ss_pred ---------ccCCCCCCCCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCC--------CCCCH
Confidence 111145788999999999999843211 1345899999999999999974 21 26788
Q ss_pred HHHHHHHHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC----------------cc
Q 047417 222 QDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQT----------------IN 285 (458)
Q Consensus 222 ~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------~~ 285 (458)
..+++|++++++.+++|||||||...........+..++.++.++|++||+||||+|..... .+
T Consensus 131 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p 210 (346)
T cd07475 131 DAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSP 210 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCC
Confidence 89999999999999999999999984333456778888899999999999999999854321 23
Q ss_pred cCCCccEEecccc
Q 047417 286 NMAPWMLTVGAST 298 (458)
Q Consensus 286 ~~a~~vitVgA~~ 298 (458)
...+++|+||+++
T Consensus 211 ~~~~~~i~Vga~~ 223 (346)
T cd07475 211 ATADDVLTVASAN 223 (346)
T ss_pred ccCCCceEEeecc
Confidence 3568999999987
No 7
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.97 E-value=4e-30 Score=251.62 Aligned_cols=205 Identities=18% Similarity=0.158 Sum_probs=150.4
Q ss_pred hhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcC
Q 047417 69 STWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFD 148 (458)
Q Consensus 69 ~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~ 148 (458)
.+|..+++|+||+|+|||||||++||+|.+..... .+. .....+.+.. .
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~~-----~~~~~~~~~~-------------~ 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GYD-----PAVNGYNFVP-------------N 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Ccc-----cccCCccccc-------------c
Confidence 37999999999999999999999999998651100 000 0000000000 0
Q ss_pred CCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHH
Q 047417 149 ILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAF 228 (458)
Q Consensus 149 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai 228 (458)
.........|..+|||||||||+|...+.....| .....|+||+|+|+.+|+|.... ....+.+++||
T Consensus 50 ~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~---i~~~~gvap~a~l~~~~v~~~~~---------~~~~~~~~~ai 117 (273)
T cd07485 50 VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGG---IAGAGGVAPGVKIMSIQIFAGRY---------YVGDDAVAAAI 117 (273)
T ss_pred cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceec---cccccccCCCCEEEEEEEECCCC---------CccHHHHHHHH
Confidence 0011233457789999999999987432111111 11234699999999999998762 57888999999
Q ss_pred HHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcccCCCccEEecccccCc
Q 047417 229 DDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMN-------GVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDR 301 (458)
Q Consensus 229 ~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~ 301 (458)
+|+++.+++|||||||... ...+...+..++..+.++ |+++|+||||+|.....+++..+++|+|||++.+.
T Consensus 118 ~~a~~~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~~ 196 (273)
T cd07485 118 VYAADNGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTND 196 (273)
T ss_pred HHHHHcCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCCC
Confidence 9999999999999999872 123556677888888888 99999999999988777788889999999999988
Q ss_pred ceeeeEEeCCceEEee
Q 047417 302 EFAGYVTLGNNKRLRG 317 (458)
Q Consensus 302 ~~~~~~~~g~~~~~~g 317 (458)
....|+++|....+..
T Consensus 197 ~~~~~S~~g~~~~i~a 212 (273)
T cd07485 197 NKASFSNYGRWVDIAA 212 (273)
T ss_pred CcCccccCCCceEEEe
Confidence 8888888877655443
No 8
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.97 E-value=3e-30 Score=254.56 Aligned_cols=208 Identities=21% Similarity=0.196 Sum_probs=135.7
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCCC-CcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcC------CC
Q 047417 78 EDVIIGGIDSGIWPESESFSDEEMGPIP-SKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFD------IL 150 (458)
Q Consensus 78 ~Gv~VaViDtGid~~Hp~f~~~~~~~~~-~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~------~~ 150 (458)
++|+|||||||||++||+|+++...... ...++....+.+|.. -+.+++|...+......+....+ ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~ 75 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----DVNGWNFLGQYDPRRIVGDDPYDLTEKGYGN 75 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----cccCeeccCCcccccccccCccccccccccc
Confidence 6899999999999999999865211000 001122222222210 12334443211100000000000 01
Q ss_pred CCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHH
Q 047417 151 PKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDD 230 (458)
Q Consensus 151 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~ 230 (458)
.+...|.+..+|||||||||+|...+ ...+.||||+|+|+.+|++... ....+++++||+|
T Consensus 76 ~~~~~~~~~~gHGT~VAGiIaa~~~n---------~~g~~GvAp~a~i~~~k~~~~g----------~~~~~~i~~Ai~~ 136 (291)
T cd07483 76 NDVNGPISDADHGTHVAGIIAAVRDN---------GIGIDGVADNVKIMPLRIVPNG----------DERDKDIANAIRY 136 (291)
T ss_pred cccCCCCCCCCcHHHHHHHHhCcCCC---------CCceEEECCCCEEEEEEEecCC----------CcCHHHHHHHHHH
Confidence 12334567899999999999987422 2237899999999999998543 4677899999999
Q ss_pred HHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC---Cccc--------CCCccEEeccccc
Q 047417 231 AIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQ---TINN--------MAPWMLTVGASTM 299 (458)
Q Consensus 231 a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~--------~a~~vitVgA~~~ 299 (458)
|++.|++|||||||... ......+..++..|.++|+++|+||||+|.+.. .++. ..+++|+|||++.
T Consensus 137 a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~ 214 (291)
T cd07483 137 AVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSK 214 (291)
T ss_pred HHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccc
Confidence 99999999999999752 123456778888899999999999999996432 2222 3478999999977
Q ss_pred Ccc---eeeeEEeCC
Q 047417 300 DRE---FAGYVTLGN 311 (458)
Q Consensus 300 ~~~---~~~~~~~g~ 311 (458)
... ++.|+++|.
T Consensus 215 ~~~~~~~~~~Sn~G~ 229 (291)
T cd07483 215 KYENNLVANFSNYGK 229 (291)
T ss_pred cCCcccccccCCCCC
Confidence 643 566777665
No 9
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.97 E-value=1.2e-29 Score=246.30 Aligned_cols=184 Identities=23% Similarity=0.279 Sum_probs=149.7
Q ss_pred ChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCC
Q 047417 67 SNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPA 146 (458)
Q Consensus 67 ~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~ 146 (458)
...+|..+ +|+||+|+||||||+++||+|... ++...+++.+.
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC-----------
Confidence 56899988 999999999999999999998532 12222333322
Q ss_pred cCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHH
Q 047417 147 FDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIE 226 (458)
Q Consensus 147 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ 226 (458)
...+.|..+|||||||||++... ....+.|+||+|+|+.+|+++... .+....+++
T Consensus 61 ------~~~~~d~~~HGT~vagii~~~~~---------~~~~~~Giap~a~l~~~~v~~~~~---------~~~~~~~~~ 116 (260)
T cd07484 61 ------DSDAMDDNGHGTHVAGIIAAATN---------NGTGVAGVAPKAKIMPVKVLDANG---------SGSLADIAN 116 (260)
T ss_pred ------CCCCCCCCCcHHHHHHHHhCccC---------CCCceEeECCCCEEEEEEEECCCC---------CcCHHHHHH
Confidence 12356788999999999998732 223478999999999999998753 578889999
Q ss_pred HHHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEecccccCcceeee
Q 047417 227 AFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGY 306 (458)
Q Consensus 227 ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~ 306 (458)
||+++++.+++|||||||.. .....+..++..+.++|+++|+||||+|.....+++..+++|+||+++.+.....+
T Consensus 117 ai~~a~~~~~~iin~S~g~~----~~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~ 192 (260)
T cd07484 117 GIRYAADKGAKVINLSLGGG----LGSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASF 192 (260)
T ss_pred HHHHHHHCCCeEEEecCCCC----CCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCCCCcCCc
Confidence 99999999999999999987 35567888888899999999999999999888899999999999999988877777
Q ss_pred EEeCCceEE
Q 047417 307 VTLGNNKRL 315 (458)
Q Consensus 307 ~~~g~~~~~ 315 (458)
+++|....+
T Consensus 193 s~~g~~~~~ 201 (260)
T cd07484 193 SNYGKWVDV 201 (260)
T ss_pred CCCCCCceE
Confidence 777655433
No 10
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=4.5e-30 Score=254.59 Aligned_cols=187 Identities=25% Similarity=0.187 Sum_probs=116.8
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCC
Q 047417 77 GEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTG 156 (458)
Q Consensus 77 G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (458)
|+||+|||||||||.+||+|..+... .|.-.+. ....+..+.++.. .....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d--------~~~~~~~g~d~~~----------------~~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD--------YKAYLLPGMDKWG----------------GFYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC--------cCCCccCCcCCCC----------------CccCCC
Confidence 79999999999999999999753110 0000000 0001111111110 011346
Q ss_pred CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHH-------HHHH
Q 047417 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTI-------EAFD 229 (458)
Q Consensus 157 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~-------~ai~ 229 (458)
.|.+||||||||||||......+.++......+.||||+|+|+++|+|...+ ......+. .+++
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~---------~~~~~~~~~g~~~~~~~~~ 123 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD---------VIYAWLWTAGFDPVDRKLS 123 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC---------cchhhhhhhccchhhhhhh
Confidence 7899999999999999843222222111234589999999999999997542 23222222 2445
Q ss_pred HHH--HcCCcEEEecccCCCCCC----CcccHHHHHHHH-HHhCCcEEEEecCCCCCCCCC--cccCCCccEEecccccC
Q 047417 230 DAI--HDGVDIITVSLGYDKIAD----FLSDGVVIGAFH-ATMNGVLTVAAAGNGGPEPQT--INNMAPWMLTVGASTMD 300 (458)
Q Consensus 230 ~a~--~~g~~VIn~SlG~~~~~~----~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~--~~~~a~~vitVgA~~~~ 300 (458)
|++ +++++|||||||...... ...+..+..+.. +.++|+++|+||||+|+...+ .|+.++++|+|||++..
T Consensus 124 ~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~ 203 (311)
T cd07497 124 WIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNF 203 (311)
T ss_pred hhhccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCC
Confidence 443 579999999999862210 112233333333 348999999999999986544 45577999999999754
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1e-29 Score=243.89 Aligned_cols=168 Identities=24% Similarity=0.243 Sum_probs=131.9
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCCC
Q 047417 80 VIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDL 159 (458)
Q Consensus 80 v~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 159 (458)
|+|||||||||.+||+|+++. +...++. .....|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~~--------------------------~~~~~~~-------------------~~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV--------------------------IARLFFA-------------------GPGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc--------------------------cccccCC-------------------CCCCCCC
Confidence 799999999999999997541 1111110 0124567
Q ss_pred CCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 047417 160 DGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDII 239 (458)
Q Consensus 160 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~VI 239 (458)
.+|||||||||+|... . ..|+||+|+|+.+|++..... +..++.+++++||+||++.+++||
T Consensus 36 ~~HGT~vAgiia~~~~----------~--~~Gvap~a~i~~~~v~~~~~~------~~~~~~~~i~~ai~~a~~~g~~VI 97 (239)
T cd05561 36 SAHGTAVASLLAGAGA----------Q--RPGLLPGADLYGADVFGRAGG------GEGASALALARALDWLAEQGVRVV 97 (239)
T ss_pred CCCHHHHHHHHhCCCC----------C--CcccCCCCEEEEEEEecCCCC------CCCcCHHHHHHHHHHHHHCCCCEE
Confidence 8999999999998732 1 168999999999999986521 124678899999999999999999
Q ss_pred EecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCC-CCCcccCCCccEEecccccCcceeeeEEeCCceEE
Q 047417 240 TVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPE-PQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRL 315 (458)
Q Consensus 240 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-~~~~~~~a~~vitVgA~~~~~~~~~~~~~g~~~~~ 315 (458)
|||||.+ ....+..++.++.++|+++|+||||+|++ ...+|+..+++|+|+|++.++....+++.|....+
T Consensus 98 n~S~g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di 169 (239)
T cd05561 98 NISLAGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGRLYREANRGAHVDF 169 (239)
T ss_pred EeCCCCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCCccccCCCCCcceE
Confidence 9999975 24567888899999999999999999976 34677788999999999988877777766655443
No 12
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=1.6e-29 Score=252.13 Aligned_cols=183 Identities=25% Similarity=0.238 Sum_probs=140.8
Q ss_pred hhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCc
Q 047417 68 NSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAF 147 (458)
Q Consensus 68 ~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~ 147 (458)
+.+|+.+++|+||+|||||||||++||+|.+.-.. +.++.+.++|..+.. .+ .
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~--------------------~~~~~~~~d~~~~~~----~~---~ 55 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP--------------------GCKVAGGYDFVGDDY----DG---T 55 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC--------------------CceeccccccCCccc----cc---c
Confidence 58999999999999999999999999999864110 112333344432211 00 1
Q ss_pred CCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHH
Q 047417 148 DILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEA 227 (458)
Q Consensus 148 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~a 227 (458)
+...+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++.+. +....+.++++
T Consensus 56 ~~~~~~~~~~d~~gHGT~vAgiia~~~~~----------~~~~GiAp~a~i~~~~v~~~~---------~~~~~~~~~~a 116 (312)
T cd07489 56 NPPVPDDDPMDCQGHGTHVAGIIAANPNA----------YGFTGVAPEATLGAYRVFGCS---------GSTTEDTIIAA 116 (312)
T ss_pred cCCCCCCCCCCCCCcHHHHHHHHhcCCCC----------CceEEECCCCEEEEEEeecCC---------CCCCHHHHHHH
Confidence 12223446678899999999999988421 347899999999999999865 25778899999
Q ss_pred HHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcccCCCccEEecccc
Q 047417 228 FDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEP---QTINNMAPWMLTVGAST 298 (458)
Q Consensus 228 i~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~a~~vitVgA~~ 298 (458)
++++++++++|||||||.. ..+....+...+.++.++|+++|+||||+|... ...++..+++|+|||++
T Consensus 117 i~~a~~~~~~iIn~S~g~~--~~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~ 188 (312)
T cd07489 117 FLRAYEDGADVITASLGGP--SGWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD 188 (312)
T ss_pred HHHHHhcCCCEEEeCCCcC--CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec
Confidence 9999999999999999987 334457788888889999999999999998653 23455779999999987
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.97 E-value=2.3e-29 Score=245.02 Aligned_cols=182 Identities=21% Similarity=0.243 Sum_probs=136.2
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCC
Q 047417 77 GEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTG 156 (458)
Q Consensus 77 G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (458)
|+||+|||||||||++||+|++. |.+... ..+...+.+.+ .......|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d--------------~~~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFD--------------PVGNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCccccccccc--------------CCCCCCCC
Confidence 89999999999999999999864 111000 00000011111 11113456
Q ss_pred CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHH---
Q 047417 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIH--- 233 (458)
Q Consensus 157 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~--- 233 (458)
.|..+|||||||||+|.. ..+...||||+|+|+.+|++... .++..+++++++++++
T Consensus 49 ~d~~~HGT~vagii~g~~----------~~~~~~GvAp~a~i~~~~~~~~~----------~~~~~~~~~a~~~~~~~~~ 108 (264)
T cd07481 49 YDDNGHGTHTMGTMVGND----------GDGQQIGVAPGARWIACRALDRN----------GGNDADYLRCAQWMLAPTD 108 (264)
T ss_pred CCCCCchhhhhhheeecC----------CCCCceEECCCCeEEEEEeecCC----------CCcHHHHHHHHHHHHhccc
Confidence 688899999999999873 22234889999999999999765 4788899999999975
Q ss_pred ---------cCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCccEEecccccCc
Q 047417 234 ---------DGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQ---TINNMAPWMLTVGASTMDR 301 (458)
Q Consensus 234 ---------~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~a~~vitVgA~~~~~ 301 (458)
.+++|||||||.... ....+..++..+.++|++||+||||+|.+.. .+++..+++|+|||++.++
T Consensus 109 ~~~~~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~~ 185 (264)
T cd07481 109 SAGNPADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRND 185 (264)
T ss_pred ccccccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCCC
Confidence 789999999998721 3456667778888999999999999996543 3567789999999999998
Q ss_pred ceeeeEEeCCce
Q 047417 302 EFAGYVTLGNNK 313 (458)
Q Consensus 302 ~~~~~~~~g~~~ 313 (458)
....|+++|...
T Consensus 186 ~~~~~S~~g~~~ 197 (264)
T cd07481 186 VLADFSSRGPST 197 (264)
T ss_pred CCccccCCCCCC
Confidence 888888776553
No 14
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=5.3e-29 Score=245.16 Aligned_cols=139 Identities=24% Similarity=0.206 Sum_probs=116.0
Q ss_pred CCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHH--
Q 047417 155 TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAI-- 232 (458)
Q Consensus 155 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~-- 232 (458)
...+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. ..+.+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~---------~~~~~GvAp~a~i~~~~v~~~~----------~~~~~~i~~a~~~a~~~ 126 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN---------GVGVAGVAWGARILPVRVLGKC----------GGTLSDIVDGMRWAAGL 126 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC---------CCCceeecCCCeEEEEEEecCC----------CCcHHHHHHHHHHHhcc
Confidence 3456789999999999998431 2237899999999999999876 348889999999998
Q ss_pred --------HcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCccEEecccccCcce
Q 047417 233 --------HDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEP-QTINNMAPWMLTVGASTMDREF 303 (458)
Q Consensus 233 --------~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~a~~vitVgA~~~~~~~ 303 (458)
.++++|||||||... .....+..++..+.++|++||+||||+|.+. ..+|+..+++|+|||++.++..
T Consensus 127 ~~~~~~~~~~~~~Iin~S~G~~~---~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~~~~ 203 (285)
T cd07496 127 PVPGVPVNPNPAKVINLSLGGDG---ACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLRGQR 203 (285)
T ss_pred CcCCCcccCCCCeEEEeCCCCCC---CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCCCCc
Confidence 457899999999872 1156788889999999999999999999775 6677888999999999999988
Q ss_pred eeeEEeCCceEE
Q 047417 304 AGYVTLGNNKRL 315 (458)
Q Consensus 304 ~~~~~~g~~~~~ 315 (458)
+.|+++|....+
T Consensus 204 ~~~S~~g~~vdi 215 (285)
T cd07496 204 ASYSNYGPAVDV 215 (285)
T ss_pred ccccCCCCCCCE
Confidence 888888776544
No 15
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=7e-29 Score=241.25 Aligned_cols=181 Identities=27% Similarity=0.297 Sum_probs=138.0
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCC
Q 047417 79 DVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRD 158 (458)
Q Consensus 79 Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 158 (458)
||+|||||||||.+||+|..+.. ..+.++.+.++|.+... ....|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-------------------~~~~~i~~~~~~~~~~~----------------~~~~~ 45 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-------------------FKNLRILGEYDFVDNSN----------------NTNYT 45 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-------------------ccCCceeeeecCccCCC----------------CCCCC
Confidence 79999999999999999952210 12335677777765422 01357
Q ss_pred CCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 047417 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDI 238 (458)
Q Consensus 159 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~V 238 (458)
..+|||||||||+|.. .+.+.||||+|+|+.+|+.....+ .......+++|++|+.+.+++|
T Consensus 46 ~~~HGT~vagiia~~~-----------~~~~~GvAp~a~l~~~~~~~~~~~-------~~~~~~~~~~ai~~a~~~~v~V 107 (261)
T cd07493 46 DDDHGTAVLSTMAGYT-----------PGVMVGTAPNASYYLARTEDVASE-------TPVEEDNWVAAAEWADSLGVDI 107 (261)
T ss_pred CCCchhhhheeeeeCC-----------CCCEEEeCCCCEEEEEEecccCCc-------ccccHHHHHHHHHHHHHcCCCE
Confidence 8899999999999872 134789999999999998764421 1345678999999999999999
Q ss_pred EEecccCCCCCCC-----------cccHHHHHHHHHHhCCcEEEEecCCCCCC---CCCcccCCCccEEecccccCccee
Q 047417 239 ITVSLGYDKIADF-----------LSDGVVIGAFHATMNGVLTVAAAGNGGPE---PQTINNMAPWMLTVGASTMDREFA 304 (458)
Q Consensus 239 In~SlG~~~~~~~-----------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~a~~vitVgA~~~~~~~~ 304 (458)
||||||....... ....+.++++.+.++|+++|+||||+|.. ...+|+..+++|+|||++.+....
T Consensus 108 In~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~~~~~ 187 (261)
T cd07493 108 ISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANGNKA 187 (261)
T ss_pred EEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccCCCCC
Confidence 9999998732111 12457788888999999999999999976 345667789999999998887777
Q ss_pred eeEEeCCc
Q 047417 305 GYVTLGNN 312 (458)
Q Consensus 305 ~~~~~g~~ 312 (458)
.|+++|..
T Consensus 188 ~~S~~G~~ 195 (261)
T cd07493 188 SFSSIGPT 195 (261)
T ss_pred ccCCcCCC
Confidence 77776643
No 16
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.96 E-value=8.1e-29 Score=239.90 Aligned_cols=172 Identities=25% Similarity=0.304 Sum_probs=141.6
Q ss_pred hhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCC
Q 047417 70 TWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDI 149 (458)
Q Consensus 70 ~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~ 149 (458)
.|..+++|+||+||||||||+.+||+|.++ +...+++...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 677789999999999999999999999754 2222333221
Q ss_pred CCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHH
Q 047417 150 LPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFD 229 (458)
Q Consensus 150 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~ 229 (458)
....|..+|||||||||++. ..||||+|+|+.+|++.... ....+.++++|+
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~---------------~~GvAp~a~i~~~~i~~~~~---------~~~~~~~~~ai~ 108 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGK---------------TYGVAKKANLVAVKVLDCNG---------SGTLSGIIAGLE 108 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHcc---------------ccCcCCCCeEEEEEEeCCCC---------CcCHHHHHHHHH
Confidence 11457889999999999986 25799999999999998762 577899999999
Q ss_pred HHHHc-----CCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCccEEecccccCcce
Q 047417 230 DAIHD-----GVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEP-QTINNMAPWMLTVGASTMDREF 303 (458)
Q Consensus 230 ~a~~~-----g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~a~~vitVgA~~~~~~~ 303 (458)
|+++. +++|||||||... ...+..++..+.++|+++|+||||+|.+. ...|+..+++|+|||++.+...
T Consensus 109 ~~~~~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~~~~ 183 (255)
T cd04077 109 WVANDATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSDDAR 183 (255)
T ss_pred HHHhcccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCCCCc
Confidence 99987 4899999999872 56788888999999999999999999765 4556788999999999998888
Q ss_pred eeeEEeCCceE
Q 047417 304 AGYVTLGNNKR 314 (458)
Q Consensus 304 ~~~~~~g~~~~ 314 (458)
..++++|....
T Consensus 184 ~~~S~~g~~~~ 194 (255)
T cd04077 184 ASFSNYGSCVD 194 (255)
T ss_pred cCcccCCCCCc
Confidence 88888776543
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=1.2e-28 Score=239.63 Aligned_cols=178 Identities=26% Similarity=0.355 Sum_probs=139.7
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCC
Q 047417 77 GEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTG 156 (458)
Q Consensus 77 G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (458)
|+||+|+|||||||++||+|.+.... ...+... .......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~--------------------------~~~~~~~--------------~~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR--------------------------FADFVNT--------------VNGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc--------------------------ccccccc--------------ccCCCCC
Confidence 89999999999999999999864110 0111110 0112345
Q ss_pred CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHc--
Q 047417 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHD-- 234 (458)
Q Consensus 157 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~-- 234 (458)
.|..+|||||||||+|...+ ....+.||||+|+|+.+|+++... .+..+++++||+|+++.
T Consensus 41 ~d~~~HGT~vAgiiag~~~~--------~~~~~~Giap~a~i~~~~v~~~~~---------~~~~~~~~~ai~~~~~~~~ 103 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRA--------SNGKYKGVAPGANLVGVKVLDDSG---------SGSESDIIAGIDWVVENNE 103 (264)
T ss_pred CCCCCchHHHHHHHhcCCcc--------cCCceEEECCCCeEEEEEeecCCC---------CccHHHHHHHHHHHHhhcc
Confidence 57789999999999988421 134578999999999999998763 56788999999999998
Q ss_pred --CCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcccCCCccEEecccccCcc----eeee
Q 047417 235 --GVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQ--TINNMAPWMLTVGASTMDRE----FAGY 306 (458)
Q Consensus 235 --g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~a~~vitVgA~~~~~~----~~~~ 306 (458)
+++|||||||...........+..++.++.++|+++|+||||++.... ..++..+++|+|||++.+.. ...+
T Consensus 104 ~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~~~~~ 183 (264)
T cd07487 104 KYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPHDDGISYF 183 (264)
T ss_pred ccCceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCCCcccccc
Confidence 999999999988433456788999999999999999999999998765 55667899999999988876 4666
Q ss_pred EEeCC
Q 047417 307 VTLGN 311 (458)
Q Consensus 307 ~~~g~ 311 (458)
++.|.
T Consensus 184 s~~G~ 188 (264)
T cd07487 184 SSRGP 188 (264)
T ss_pred ccCCC
Confidence 65553
No 18
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=2.1e-28 Score=236.75 Aligned_cols=172 Identities=23% Similarity=0.253 Sum_probs=133.4
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCC
Q 047417 79 DVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRD 158 (458)
Q Consensus 79 Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 158 (458)
||+|||||||||++||+|.+. +....+|..+. ........|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------------~~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------------RISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------------CCCCCCCCC
Confidence 799999999999999999754 11111222110 011234557
Q ss_pred CCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 047417 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDI 238 (458)
Q Consensus 159 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~V 238 (458)
..+|||||||||+|+.. ++...||||+++|+.+|++... .+..+++++||+|+++.+++|
T Consensus 42 ~~~HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~----------~~~~~~~~~ai~~a~~~~~~V 101 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDG----------GGSLSQIIAGMEWAVEKDADV 101 (254)
T ss_pred CCCcHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCC----------CCcHHHHHHHHHHHHhCCCCE
Confidence 88999999999998832 3346799999999999999765 478899999999999999999
Q ss_pred EEecccCCCCCCCcccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCccEEecccccCcceeeeEEeCCc
Q 047417 239 ITVSLGYDKIADFLSDGVVIGAFHATM-NGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNN 312 (458)
Q Consensus 239 In~SlG~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~g~~ 312 (458)
||||||.... ....+..++....+ +|++||+||||+|.....+++..+++|+|||++.+.....+++++..
T Consensus 102 in~S~g~~~~---~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~ 173 (254)
T cd07490 102 VSMSLGGTYY---SEDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFGSS 173 (254)
T ss_pred EEECCCcCCC---CCcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCccc
Confidence 9999998722 15666666666554 69999999999998877778889999999999988877777666543
No 19
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.96 E-value=2.3e-28 Score=234.86 Aligned_cols=177 Identities=24% Similarity=0.255 Sum_probs=139.5
Q ss_pred cEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCCC
Q 047417 80 VIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDL 159 (458)
Q Consensus 80 v~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 159 (458)
|+|||||||||++||+|++.. +++..+++.. +...+.|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~------------------------~~~~~~~~~~-----------------~~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP------------------------KLVPGWNFVS-----------------NNDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccCc------------------------CccCCccccC-----------------CCCCCCCC
Confidence 789999999999999998530 0111111111 11234678
Q ss_pred CCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 047417 160 DGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDII 239 (458)
Q Consensus 160 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~VI 239 (458)
.+|||||||||+|+.. ....+.||||+|+|+.+|++.... .+..+.+.++++|+++.+++||
T Consensus 40 ~~HGT~vAgiiag~~~---------~~~~~~Gvap~a~i~~~~~~~~~~---------~~~~~~~~~ai~~a~~~~~~Vi 101 (242)
T cd07498 40 DGHGTACAGVAAAVGN---------NGLGVAGVAPGAKLMPVRIADSLG---------YAYWSDIAQAITWAADNGADVI 101 (242)
T ss_pred CCCHHHHHHHHHhccC---------CCceeEeECCCCEEEEEEEECCCC---------CccHHHHHHHHHHHHHCCCeEE
Confidence 8999999999998732 123478999999999999998762 5678899999999999999999
Q ss_pred EecccCCCCCCCcccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCccEEecccccCcceeeeEEeCCceEE
Q 047417 240 TVSLGYDKIADFLSDGVVIGAFHATM-NGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRL 315 (458)
Q Consensus 240 n~SlG~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~~~~~~g~~~~~ 315 (458)
|||||...........+..++..+.. +|+++|+||||+|......++..+++|+|||++..+....|+++|....+
T Consensus 102 n~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~ 178 (242)
T cd07498 102 SNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSNDARASYSNYGNYVDL 178 (242)
T ss_pred EeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCCCCccCcCCCCCCeEE
Confidence 99999874333446778888888888 99999999999998777778889999999999988888888887766544
No 20
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.96 E-value=1.8e-28 Score=239.46 Aligned_cols=164 Identities=23% Similarity=0.186 Sum_probs=122.6
Q ss_pred CCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCC
Q 047417 74 ARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKL 153 (458)
Q Consensus 74 ~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (458)
+++|+||+|||||||||.+||+|.+..- .++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeeccc-----------------c
Confidence 4789999999999999999986532110 011111111110 1
Q ss_pred CCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHH
Q 047417 154 KTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIH 233 (458)
Q Consensus 154 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~ 233 (458)
....|..+|||||||||+ | |||+|+|+.+|++ ...+++++||+|+++
T Consensus 42 ~~~~d~~gHGT~vAgii~----------G---------vAP~a~l~~~~~~--------------~~~~~i~~ai~~a~~ 88 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH----------D---------IAPGAELAFHTAG--------------GGELDFAAAIRALAA 88 (275)
T ss_pred CCCCCCCchHHHHHHHHh----------c---------cCCCCEEEEEecC--------------CCHHHHHHHHHHHHH
Confidence 234578899999999996 3 9999999988763 347899999999999
Q ss_pred cCCcEEEecccCCCCCCCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CcccCCCccEEecccccCcceeeeEEe
Q 047417 234 DGVDIITVSLGYDKIADFLSDGVVIGAFHATMN-GVLTVAAAGNGGPEPQ-TINNMAPWMLTVGASTMDREFAGYVTL 309 (458)
Q Consensus 234 ~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~a~~vitVgA~~~~~~~~~~~~~ 309 (458)
+|++|||||||......+....+..++.++.++ |++||+||||+|+... ..++..++||+|||++.++....+++.
T Consensus 89 ~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~ 166 (275)
T cd05562 89 AGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDP 166 (275)
T ss_pred cCCCEEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccc
Confidence 999999999998632222345688888888887 9999999999998543 346688999999999887766555543
No 21
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.96 E-value=3e-28 Score=231.78 Aligned_cols=172 Identities=28% Similarity=0.298 Sum_probs=137.3
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCC
Q 047417 79 DVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRD 158 (458)
Q Consensus 79 Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 158 (458)
||+|||||+||+.+||+|++. +....+|.... ...+.|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~~----------------~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGDD----------------NNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCCC----------------CCCCCC
Confidence 799999999999999999754 11112222110 024457
Q ss_pred CCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 047417 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDI 238 (458)
Q Consensus 159 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~V 238 (458)
..+|||||||||++.. ....+.|+||+|+|+.+|++.... .+...+++++++++++.+++|
T Consensus 39 ~~~HGT~vA~ii~~~~----------~~~~~~giap~a~i~~~~~~~~~~---------~~~~~~l~~ai~~a~~~~~~V 99 (229)
T cd07477 39 GNGHGTHVAGIIAALD----------NGVGVVGVAPEADLYAVKVLNDDG---------SGTYSDIIAGIEWAIENGMDI 99 (229)
T ss_pred CCCCHHHHHHHHhccc----------CCCccEeeCCCCEEEEEEEECCCC---------CcCHHHHHHHHHHHHHCCCCE
Confidence 8899999999999873 222478999999999999998763 567789999999999999999
Q ss_pred EEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCccEEecccccCcceeeeEEeCCceEE
Q 047417 239 ITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTI--NNMAPWMLTVGASTMDREFAGYVTLGNNKRL 315 (458)
Q Consensus 239 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~a~~vitVgA~~~~~~~~~~~~~g~~~~~ 315 (458)
||||||.. .....+..++..+.++|+++|+||||++...... ++..+++|+||+++.+.....+++.|....+
T Consensus 100 in~S~g~~----~~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~ 174 (229)
T cd07477 100 INMSLGGP----SDSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRASFSSTGPEVEL 174 (229)
T ss_pred EEECCccC----CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCCCCcCCccCCCCCceE
Confidence 99999987 3345677788889999999999999999776654 7888999999999998888778777665433
No 22
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=3.9e-28 Score=239.92 Aligned_cols=158 Identities=23% Similarity=0.305 Sum_probs=122.0
Q ss_pred CCChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCC
Q 047417 65 IPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRN 144 (458)
Q Consensus 65 ~~~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~ 144 (458)
+.+..+|+++++|+||+||||||||+..|| |....+. + ++ .+..+
T Consensus 8 l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~--------------~~----~~~~~--------- 52 (298)
T cd07494 8 LNATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V--------------RV----VLAPG--------- 52 (298)
T ss_pred cChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c--------------ee----ecCCC---------
Confidence 346799999999999999999999999998 7643110 0 00 01100
Q ss_pred CCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHH
Q 047417 145 PAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDT 224 (458)
Q Consensus 145 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i 224 (458)
......|..|||||||+++. ||||+|+|+.+|++.+ ..+.+
T Consensus 53 -------~~~~~~D~~gHGT~vag~i~-------------------GvAP~a~i~~vkv~~~-------------~~~~~ 93 (298)
T cd07494 53 -------ATDPACDENGHGTGESANLF-------------------AIAPGAQFIGVKLGGP-------------DLVNS 93 (298)
T ss_pred -------CCCCCCCCCCcchheeecee-------------------EeCCCCeEEEEEccCC-------------CcHHH
Confidence 01234678899999987653 5999999999999853 34578
Q ss_pred HHHHHHHHHcCCcEEEecccCCCCCC---------CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEec
Q 047417 225 IEAFDDAIHDGVDIITVSLGYDKIAD---------FLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVG 295 (458)
Q Consensus 225 ~~ai~~a~~~g~~VIn~SlG~~~~~~---------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVg 295 (458)
++||+||++++++|||||||...... .....+.+++.+|.++|++||+||||++. .+|+..|+||+||
T Consensus 94 ~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVg 170 (298)
T cd07494 94 VGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAG 170 (298)
T ss_pred HHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEE
Confidence 99999999999999999999863211 12345788889999999999999999984 5688999999999
Q ss_pred cccc
Q 047417 296 ASTM 299 (458)
Q Consensus 296 A~~~ 299 (458)
|++.
T Consensus 171 a~~~ 174 (298)
T cd07494 171 GVFV 174 (298)
T ss_pred eEec
Confidence 9854
No 23
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.95 E-value=1.1e-27 Score=236.40 Aligned_cols=137 Identities=30% Similarity=0.330 Sum_probs=109.1
Q ss_pred CCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHH
Q 047417 154 KTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIH 233 (458)
Q Consensus 154 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~ 233 (458)
....|..+|||||||+|+|.. ...||||+|+|+.+|+++... .....++++||+||++
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~-------------~~~GvAp~a~i~~~~v~~~~~---------~~~~~~~~~ai~~a~~ 104 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANG-------------NIKGVAPGIGIVSYRVFGSCG---------SAESSWIIKAIIDAAD 104 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCC-------------CCceeCCCCEEEEEEeecCCC---------CcCHHHHHHHHHHHHH
Confidence 345678999999999999862 123899999999999998762 4578899999999999
Q ss_pred cCCcEEEecccCCCCCCC-------cccHHHHHHHHHHhCCcEEEEecCCCCCCC----------------------CCc
Q 047417 234 DGVDIITVSLGYDKIADF-------LSDGVVIGAFHATMNGVLTVAAAGNGGPEP----------------------QTI 284 (458)
Q Consensus 234 ~g~~VIn~SlG~~~~~~~-------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----------------------~~~ 284 (458)
.+++|||||||....... ....+..++..+.++|++||+||||+|... ...
T Consensus 105 ~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (294)
T cd07482 105 DGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDV 184 (294)
T ss_pred CCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceec
Confidence 999999999998632111 124566777788899999999999999653 234
Q ss_pred ccCCCccEEecccccCcceeeeEEeCCc
Q 047417 285 NNMAPWMLTVGASTMDREFAGYVTLGNN 312 (458)
Q Consensus 285 ~~~a~~vitVgA~~~~~~~~~~~~~g~~ 312 (458)
++..+++|+|||++.++....|++.|..
T Consensus 185 p~~~~~vi~Vga~~~~~~~~~~S~~g~~ 212 (294)
T cd07482 185 PASLPNVITVSATDNNGNLSSFSNYGNS 212 (294)
T ss_pred ccccCceEEEEeeCCCCCcCccccCCCC
Confidence 4567899999999988887777776543
No 24
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=239.79 Aligned_cols=232 Identities=19% Similarity=0.266 Sum_probs=179.1
Q ss_pred eeeeEEEEeCHHHHHHHhCCCCeEEEEeccccccC--------CCCCCcccCCCcCCCCCChhhhc----cCCCCCCcEE
Q 047417 15 HINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKL--------TTGAWNFLGLEKDNVIPSNSTWE----RARFGEDVII 82 (458)
Q Consensus 15 ~~ng~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~----~~~~G~Gv~V 82 (458)
+|+|..-.++.+-+..++++|-+..++++...... ...+|.+..+....+. -..-|- +...|+||..
T Consensus 145 ~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~-~y~~~~~Y~Y~~~aG~gvta 223 (501)
T KOG1153|consen 145 VFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKL-KYDSWGNYVYEIDAGKGVTA 223 (501)
T ss_pred hhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccc-cccchheEEeecccCCCeEE
Confidence 78888888889999999999999999988766432 3334432222111100 011221 2348999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCCCCCC
Q 047417 83 GGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGH 162 (458)
Q Consensus 83 aViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~gH 162 (458)
.|+||||+.+||+|.++. .|- . .+. +.....|++||
T Consensus 224 Yv~DTGVni~H~dFegRa------~wG-a-------------------~i~------------------~~~~~~D~nGH 259 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGRA------IWG-A-------------------TIP------------------PKDGDEDCNGH 259 (501)
T ss_pred EEecccccccccccccce------ecc-c-------------------ccC------------------CCCcccccCCC
Confidence 999999999999998651 120 0 011 01234589999
Q ss_pred hhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHc--------
Q 047417 163 GTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHD-------- 234 (458)
Q Consensus 163 GThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~-------- 234 (458)
||||||+|++. --|||.+++|+++||+.++ |++..+++++++|++++.
T Consensus 260 GTH~AG~I~sK---------------t~GvAK~s~lvaVKVl~~d---------GsGt~Sdvi~GvE~~~k~h~~~k~~~ 315 (501)
T KOG1153|consen 260 GTHVAGLIGSK---------------TFGVAKNSNLVAVKVLRSD---------GSGTVSDVIKGVEFVVKHHEKKKKKE 315 (501)
T ss_pred cceeeeeeecc---------------ccccccccceEEEEEeccC---------CcEeHHHHHhHHHHHHHHhhhhhccc
Confidence 99999999986 2459999999999999998 479999999999999986
Q ss_pred -CCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-ccCCCccEEecccccCcceeeeEEeCCc
Q 047417 235 -GVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTI-NNMAPWMLTVGASTMDREFAGYVTLGNN 312 (458)
Q Consensus 235 -g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~a~~vitVgA~~~~~~~~~~~~~g~~ 312 (458)
+..|.|||+|+. .+..++.|+++|.+.||++++||||+-.+.|.. |+.+..+|||||++....++.|+++|.=
T Consensus 316 ~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~D~iA~FSN~G~C 390 (501)
T KOG1153|consen 316 GKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKNDTIAFFSNWGKC 390 (501)
T ss_pred CCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccccchhhhcCccce
Confidence 467999999997 567889999999999999999999999776544 5688999999999999999999999987
Q ss_pred eEEeeccc
Q 047417 313 KRLRGASL 320 (458)
Q Consensus 313 ~~~~g~~~ 320 (458)
..+..+++
T Consensus 391 VdiFAPGv 398 (501)
T KOG1153|consen 391 VDIFAPGV 398 (501)
T ss_pred eeeecCch
Confidence 76655443
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.95 E-value=1.1e-27 Score=236.36 Aligned_cols=179 Identities=24% Similarity=0.221 Sum_probs=129.9
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCC
Q 047417 73 RARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPK 152 (458)
Q Consensus 73 ~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (458)
++++|+||+|||||||||++||+|.+.... ... ..++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~---~~~~~~~~~~~~~~------------------ 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTN---LFHRKIVRYDSLSD------------------ 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCc---cCcccEEEeeccCC------------------
Confidence 578999999999999999999999764210 001 12233333222111
Q ss_pred CCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHH
Q 047417 153 LKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAI 232 (458)
Q Consensus 153 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~ 232 (458)
...|..+|||||||||+|....... ...+.||||+|+|+.+|++..... ......+.++++++.
T Consensus 49 --~~~d~~~HGT~vAgiia~~~~~~~~------~~~~~GvAp~a~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 112 (293)
T cd04842 49 --TKDDVDGHGTHVAGIIAGKGNDSSS------ISLYKGVAPKAKLYFQDIGDTSGN--------LSSPPDLNKLFSPMY 112 (293)
T ss_pred --CCCCCCCCcchhheeeccCCcCCCc------ccccccccccCeEEEEEeeccCcc--------ccCCccHHHHHHHHH
Confidence 1227899999999999998432211 114789999999999999987631 356777899999999
Q ss_pred HcCCcEEEecccCCCCCCCcccHHHHHHHHH-Hh-CCcEEEEecCCCCCCCC---CcccCCCccEEecccccCcc
Q 047417 233 HDGVDIITVSLGYDKIADFLSDGVVIGAFHA-TM-NGVLTVAAAGNGGPEPQ---TINNMAPWMLTVGASTMDRE 302 (458)
Q Consensus 233 ~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a-~~-~Gi~vV~AAGN~G~~~~---~~~~~a~~vitVgA~~~~~~ 302 (458)
+.+++|||||||..... .......++.++ .+ +|+++|+||||+|.... ..++.++++|+|||++....
T Consensus 113 ~~~~~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~ 185 (293)
T cd04842 113 DAGARISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSV 185 (293)
T ss_pred HhCCEEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCc
Confidence 99999999999997321 123444455543 33 89999999999997755 56678899999999988765
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=2.4e-27 Score=234.71 Aligned_cols=168 Identities=27% Similarity=0.296 Sum_probs=118.1
Q ss_pred cCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCC
Q 047417 73 RARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPK 152 (458)
Q Consensus 73 ~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (458)
.+++|+||+|||||||||.+||+|.+.. +...+|.+.
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~--------------------------~~~~~~~~~----------------- 39 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRD--------------------------ITTKSFVGG----------------- 39 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCc--------------------------ccCcccCCC-----------------
Confidence 5789999999999999999999998541 111122211
Q ss_pred CCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHH
Q 047417 153 LKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAI 232 (458)
Q Consensus 153 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~ 232 (458)
..+.|..+|||||||||+|+.. .+...||||+|+|+.+|++.... .+....+++||+||+
T Consensus 40 -~~~~d~~gHGT~VAgiiag~~~----------~~~~~GvAp~a~i~~~~~~~~~~---------~~~~~~i~~ai~~a~ 99 (297)
T cd07480 40 -EDVQDGHGHGTHCAGTIFGRDV----------PGPRYGVARGAEIALIGKVLGDG---------GGGDGGILAGIQWAV 99 (297)
T ss_pred -CCCCCCCCcHHHHHHHHhcccC----------CCcccccCCCCEEEEEEEEeCCC---------CCcHHHHHHHHHHHH
Confidence 1245788999999999998732 23357899999999999998663 567778999999999
Q ss_pred HcCCcEEEecccCCCC---------CCCcccHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcc---
Q 047417 233 HDGVDIITVSLGYDKI---------ADFLSDGVVIGAFHA---------------TMNGVLTVAAAGNGGPEPQTIN--- 285 (458)
Q Consensus 233 ~~g~~VIn~SlG~~~~---------~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~--- 285 (458)
+.+++|||||||.... .......++.....+ ..+|++||+||||+|.......
T Consensus 100 ~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~ 179 (297)
T cd07480 100 ANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVG 179 (297)
T ss_pred HcCCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCcc
Confidence 9999999999998631 111122333333333 7899999999999986433221
Q ss_pred --c---CCCccEEecccccCcce
Q 047417 286 --N---MAPWMLTVGASTMDREF 303 (458)
Q Consensus 286 --~---~a~~vitVgA~~~~~~~ 303 (458)
. ....|++|++.+....+
T Consensus 180 ~~~~~~~~~~V~~V~~~~~~~~~ 202 (297)
T cd07480 180 NPAACPSAMGVAAVGALGRTGNF 202 (297)
T ss_pred CccccccccEEEEECCCCCCCCc
Confidence 1 22445666655444433
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=6.2e-27 Score=227.07 Aligned_cols=190 Identities=23% Similarity=0.224 Sum_probs=138.2
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCCCC-CCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCC
Q 047417 78 EDVIIGGIDSGIWPESESFSDEEMGPI-PSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTG 156 (458)
Q Consensus 78 ~Gv~VaViDtGid~~Hp~f~~~~~~~~-~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (458)
+||+|+|||||||++||+|.++..... ...+.+....+ ..|.+.. ++ ++......++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-----~~---~~~~~~~~~~ 59 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDG--------------NGYVDDI-----YG---WNFVNNDNDP 59 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCC--------------CCcccCC-----Cc---ccccCCCCCC
Confidence 799999999999999999986521100 00001111101 1111110 00 1112234456
Q ss_pred CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC
Q 047417 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236 (458)
Q Consensus 157 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~ 236 (458)
.|..+|||||||||+|... ....+.|+||+|+|+.+|++.... .++..+++++|+++++.++
T Consensus 60 ~d~~~HGT~va~ii~~~~~---------~~~~~~GvAp~a~l~~~~~~~~~~---------~~~~~~~~~a~~~a~~~~~ 121 (259)
T cd07473 60 MDDNGHGTHVAGIIGAVGN---------NGIGIAGVAWNVKIMPLKFLGADG---------SGTTSDAIKAIDYAVDMGA 121 (259)
T ss_pred CCCCCcHHHHHHHHHCcCC---------CCCceEEeCCCCEEEEEEEeCCCC---------CcCHHHHHHHHHHHHHCCC
Confidence 7889999999999998742 223368999999999999998762 5788999999999999999
Q ss_pred cEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCC---CCCccc--CCCccEEecccccCcceeeeEEeCC
Q 047417 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPE---PQTINN--MAPWMLTVGASTMDREFAGYVTLGN 311 (458)
Q Consensus 237 ~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~---~~~~~~--~a~~vitVgA~~~~~~~~~~~~~g~ 311 (458)
+|||||||.. .....+..++.++..+|+++|+||||+|.. ...++. ..+++|+||+++.++....++++|.
T Consensus 122 ~vin~S~G~~----~~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~~~s~~g~ 197 (259)
T cd07473 122 KIINNSWGGG----GPSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDALASFSNYGK 197 (259)
T ss_pred eEEEeCCCCC----CCCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCCcCcccCCCC
Confidence 9999999987 336778888899999999999999999976 334554 3589999999998887777776654
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=1.6e-27 Score=233.13 Aligned_cols=180 Identities=19% Similarity=0.190 Sum_probs=127.8
Q ss_pred CChhhhccC-CCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCC
Q 047417 66 PSNSTWERA-RFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRN 144 (458)
Q Consensus 66 ~~~~~~~~~-~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~ 144 (458)
++..+|+.. ..|+||+|+|||+|||.+||+|+++... ...
T Consensus 3 ~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~-----------------------------~~~---------- 43 (277)
T cd04843 3 NARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT-----------------------------LIS---------- 43 (277)
T ss_pred ChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc-----------------------------ccC----------
Confidence 467899874 4589999999999999999999854110 000
Q ss_pred CCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHH
Q 047417 145 PAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDT 224 (458)
Q Consensus 145 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i 224 (458)
...+.|..+|||||||||+|.. +...+.||||+|+|+.+|++. .+++
T Consensus 44 --------~~~~~d~~gHGT~VAGiIaa~~----------n~~G~~GvAp~a~l~~i~v~~---------------~~~~ 90 (277)
T cd04843 44 --------GLTDQADSDHGTAVLGIIVAKD----------NGIGVTGIAHGAQAAVVSSTR---------------VSNT 90 (277)
T ss_pred --------CCCCCCCCCCcchhheeeeeec----------CCCceeeeccCCEEEEEEecC---------------CCCH
Confidence 0114578899999999999862 122378999999999999974 1234
Q ss_pred HHHHHHHHH----cCCcEEEecccCCCCCC-----CcccHHHHHHHHHHhCCcEEEEecCCCCCCCC--Cc---------
Q 047417 225 IEAFDDAIH----DGVDIITVSLGYDKIAD-----FLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQ--TI--------- 284 (458)
Q Consensus 225 ~~ai~~a~~----~g~~VIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~--------- 284 (458)
+++|.+|++ .++.+||||||...... .....+..++.+|.++|++||+||||++.+.. .+
T Consensus 91 ~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~ 170 (277)
T cd04843 91 ADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRF 170 (277)
T ss_pred HHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccC
Confidence 455555555 45678999999873211 12345667888899999999999999986521 11
Q ss_pred -cc-CCCccEEecccccCcc--eeeeEEeCCceEEee
Q 047417 285 -NN-MAPWMLTVGASTMDRE--FAGYVTLGNNKRLRG 317 (458)
Q Consensus 285 -~~-~a~~vitVgA~~~~~~--~~~~~~~g~~~~~~g 317 (458)
++ ..+++|+|||++.+.. .+.|+++|....+..
T Consensus 171 ~~~~~~~~vI~VgA~~~~~~~~~~~fSn~G~~vdi~A 207 (277)
T cd04843 171 SPDFRDSGAIMVGAGSSTTGHTRLAFSNYGSRVDVYG 207 (277)
T ss_pred CcCcCCCCeEEEEeccCCCCCccccccCCCCccceEc
Confidence 11 2368999999987532 678888887655543
No 29
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=8.6e-27 Score=230.38 Aligned_cols=180 Identities=35% Similarity=0.415 Sum_probs=133.4
Q ss_pred CCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCC
Q 047417 77 GEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTG 156 (458)
Q Consensus 77 G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 156 (458)
|+||+|||||||||++||+|.+.. ..+.++...++|..... .................
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDY--DPMDTRPYPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCC--CcccccccccccccCCC
Confidence 899999999999999999998541 12234555555543311 00000000000011234
Q ss_pred CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC
Q 047417 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236 (458)
Q Consensus 157 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~ 236 (458)
.|..+|||||||+|+|...+ ...+.|+||+|+|+.+|++.... .+....+++||+|+++.++
T Consensus 59 ~~~~~HGT~vAgiiag~~~n---------~~~~~Giap~a~i~~~~~~~~~~---------~~~~~~~~~ai~~a~~~~~ 120 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVN---------VGTIKGVAPKADLYAYKVLGPGG---------SGTTDVIIAAIEQAVDDGM 120 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCc---------cCceEeECCCCeEEEEEeecCCC---------CCCHHHHHHHHHHHHHcCC
Confidence 56889999999999988432 23478999999999999998542 5788999999999999999
Q ss_pred cEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCccEEecccc
Q 047417 237 DIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTI--NNMAPWMLTVGAST 298 (458)
Q Consensus 237 ~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~a~~vitVgA~~ 298 (458)
+|||||||... ......+..++..+.++|+++|+||||+|...... ++..+++|+|||++
T Consensus 121 ~Iin~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~ 182 (295)
T cd07474 121 DVINLSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGAST 182 (295)
T ss_pred CEEEeCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeee
Confidence 99999999872 23467788889999999999999999999765554 55679999999986
No 30
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.94 E-value=3.2e-27 Score=233.71 Aligned_cols=192 Identities=20% Similarity=0.167 Sum_probs=133.7
Q ss_pred CCChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCC
Q 047417 65 IPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRN 144 (458)
Q Consensus 65 ~~~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~ 144 (458)
+....+|..+++|+||+|+|||||||.+||+|.++... ...++|.....
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~~------- 74 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDNDP------- 74 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCCC-------
Confidence 34679999999999999999999999999999854110 01122222111
Q ss_pred CCcCCCCCCCCC--CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHH
Q 047417 145 PAFDILPKLKTG--RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQ 222 (458)
Q Consensus 145 ~~~~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~ 222 (458)
...+ .|..+|||||||||+|.... .....||||+|+|+.+|++... ....
T Consensus 75 --------~~~~~~~~~~gHGT~vAgiiag~~~~---------~~~~~GvAp~a~l~~~~~~~~~-----------~~~~ 126 (297)
T cd04059 75 --------DPTPRYDDDNSHGTRCAGEIAAVGNN---------GICGVGVAPGAKLGGIRMLDGD-----------VTDV 126 (297)
T ss_pred --------CCCCccccccccCcceeeEEEeecCC---------CcccccccccceEeEEEecCCc-----------cccH
Confidence 1122 27889999999999988321 1136889999999999998654 2334
Q ss_pred HHHHHHHHHHHcCCcEEEecccCCCCCC---CcccHHHHHHHHHHh-----CCcEEEEecCCCCCCCC--Cc--ccCCCc
Q 047417 223 DTIEAFDDAIHDGVDIITVSLGYDKIAD---FLSDGVVIGAFHATM-----NGVLTVAAAGNGGPEPQ--TI--NNMAPW 290 (458)
Q Consensus 223 ~i~~ai~~a~~~g~~VIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~--~~--~~~a~~ 290 (458)
....++.++.+ .++|||||||...... .....+..++.++.. +|++||+||||+|.... .. +...++
T Consensus 127 ~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~ 205 (297)
T cd04059 127 VEAESLGLNPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIY 205 (297)
T ss_pred HHHHHHhcccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCc
Confidence 45566655544 4699999999873221 123344555555544 69999999999997322 22 235689
Q ss_pred cEEecccccCcceeeeEEeCCceEEe
Q 047417 291 MLTVGASTMDREFAGYVTLGNNKRLR 316 (458)
Q Consensus 291 vitVgA~~~~~~~~~~~~~g~~~~~~ 316 (458)
+|+|||++.++....|++.|....+.
T Consensus 206 vi~Vga~~~~g~~~~~s~~g~~~~~~ 231 (297)
T cd04059 206 TISVSAVTANGVRASYSEVGSSVLAS 231 (297)
T ss_pred eEEEEeeCCCCCCcCCCCCCCcEEEE
Confidence 99999999998888888877665443
No 31
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.94 E-value=2.1e-26 Score=218.47 Aligned_cols=156 Identities=23% Similarity=0.173 Sum_probs=120.2
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCC
Q 047417 79 DVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRD 158 (458)
Q Consensus 79 Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d 158 (458)
||+|||||||||++||+|.+.... .+.+.... .........|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~--------------------------~~~~~~~~------------~~~~~~~~~d 42 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD--------------------------GEVTIDLE------------IIVVSAEGGD 42 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc--------------------------cccccccc------------cccCCCCCCC
Confidence 799999999999999999864110 01110000 0011234557
Q ss_pred CCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 047417 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDI 238 (458)
Q Consensus 159 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~V 238 (458)
..||||||||||++. +|+++|+.+|+++... .+..+.+++||+|+++.+++|
T Consensus 43 ~~gHGT~vAgiia~~-------------------~p~~~i~~~~v~~~~~---------~~~~~~~~~ai~~a~~~~v~V 94 (222)
T cd07492 43 KDGHGTACAGIIKKY-------------------APEAEIGSIKILGEDG---------RCNSFVLEKALRACVENDIRI 94 (222)
T ss_pred CCCcHHHHHHHHHcc-------------------CCCCeEEEEEEeCCCC---------CcCHHHHHHHHHHHHHCCCCE
Confidence 889999999999963 6999999999998762 578899999999999999999
Q ss_pred EEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEecccccCcce
Q 047417 239 ITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREF 303 (458)
Q Consensus 239 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~ 303 (458)
||||||... ......+..++.++.++|+++|+||||++... ..|+..++||+|++++.++..
T Consensus 95 in~S~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~-~~Pa~~~~vi~V~~~~~~~~~ 156 (222)
T cd07492 95 VNLSLGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIG-TPPASFPNVIGVKSDTADDPK 156 (222)
T ss_pred EEeCCCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCCccCCceEEEEecCCCCCc
Confidence 999999872 22345677888889999999999999998653 337788999999998766543
No 32
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.94 E-value=8.3e-26 Score=229.24 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=96.0
Q ss_pred CCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC
Q 047417 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV 236 (458)
Q Consensus 157 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~ 236 (458)
.|+.+|||||||||||+.. ....+.||||+|+|+.+|+++... +.......+++||++|++.++
T Consensus 182 ~d~~gHGThVAGIIAg~~~---------~~~~~~GVAP~A~I~svkv~d~~~-------gs~~t~~~l~~ai~~ai~~ga 245 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP---------EEPERNGVAPGAQIVSIKIGDTRL-------GSMETGTALVRAMIAAIETKC 245 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC---------CCCceEEecCCCeEEEEEeccCCC-------CCccchHHHHHHHHHHHHcCC
Confidence 4788999999999999732 233478999999999999986541 112344679999999999999
Q ss_pred cEEEecccCCCCCCCcccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCccc---CCCccEEecccccC
Q 047417 237 DIITVSLGYDKIADFLSDGVVIGAFH-ATMNGVLTVAAAGNGGPEPQTINN---MAPWMLTVGASTMD 300 (458)
Q Consensus 237 ~VIn~SlG~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~a~~vitVgA~~~~ 300 (458)
+|||||||...... ....+.+++.+ +.++||++|+||||+|+..+++.. .+++||+|||+...
T Consensus 246 dVIN~SlG~~~~~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~ 312 (412)
T cd04857 246 DLINMSYGEATHWP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSP 312 (412)
T ss_pred CEEEecCCcCCCCc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceecc
Confidence 99999999873211 11234444444 567899999999999988776643 36899999998544
No 33
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.94 E-value=1.9e-26 Score=239.79 Aligned_cols=188 Identities=23% Similarity=0.184 Sum_probs=131.0
Q ss_pred CCCCCcEEEEeccCCCCCCCCCCC-CCCCCCCCcccccccCCCCCCccCCceeeeeEecCCC-ccccccCCCCCcCCCCC
Q 047417 75 RFGEDVIIGGIDSGIWPESESFSD-EEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKG-LISSATKRNPAFDILPK 152 (458)
Q Consensus 75 ~~G~Gv~VaViDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~-~~~~~~~g~~~~~~~~~ 152 (458)
++|+||+|||||||||+.||+|++ .+.+++...|++....+..- ....+...|... .+ .+.. ...+.+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~-----~~~~~~~~~~~~~i~-~~~~----~~~p~~ 70 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP-----GGYYGGGEYTEEIIN-AALA----SDNPYD 70 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC-----ccccCceEEeHHHHH-HHHh----cCCccc
Confidence 479999999999999999999986 45778888899876543211 011111111110 00 0000 011112
Q ss_pred CCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcC--CCCCCCCCHHHHHHHHHH
Q 047417 153 LKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHN--AAHGNDCTEQDTIEAFDD 230 (458)
Q Consensus 153 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~--~~~g~~~~~~~i~~ai~~ 230 (458)
.....|..||||||||||||+..+ ...+.||||+|+|+++|++........ .. -..+..+++++||+|
T Consensus 71 ~~~~~D~~GHGThvAGIiag~~~~---------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~-~~~~~~~~i~~ai~~ 140 (455)
T cd07478 71 IVPSRDENGHGTHVAGIAAGNGDN---------NPDFKGVAPEAELIVVKLKQAKKYLREFYED-VPFYQETDIMLAIKY 140 (455)
T ss_pred cCcCCCCCCchHHHHHHHhcCCCC---------CCCccccCCCCcEEEEEeecCCCcccccccc-cccCcHHHHHHHHHH
Confidence 234568999999999999998432 245788999999999999987631000 00 002678899999999
Q ss_pred HHHc-----CCcEEEecccCCCCCCCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC
Q 047417 231 AIHD-----GVDIITVSLGYDKIADFLSDGVVIGAFHATMN-GVLTVAAAGNGGPEPQ 282 (458)
Q Consensus 231 a~~~-----g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~ 282 (458)
+++. .+.|||||||...+.+....++++++..+..+ |++||+||||+|....
T Consensus 141 ~~~~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~ 198 (455)
T cd07478 141 LYDKALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQH 198 (455)
T ss_pred HHHHHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCC
Confidence 9874 36799999999866667788899999987766 9999999999996433
No 34
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.94 E-value=1e-25 Score=218.72 Aligned_cols=178 Identities=25% Similarity=0.246 Sum_probs=132.5
Q ss_pred CCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCC
Q 047417 76 FGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKT 155 (458)
Q Consensus 76 ~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 155 (458)
+|+||+|+|||+||+.+||+|.+..... ..+.... ......
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~--------------------------~~~~~~~-------------~~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA--------------------------SYYVAVN-------------DAGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc--------------------------ccccccc-------------cccCCC
Confidence 5999999999999999999998651110 0000000 000123
Q ss_pred CCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcC
Q 047417 156 GRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDG 235 (458)
Q Consensus 156 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g 235 (458)
..|..+|||||||||+|... ...+.|+||+|+|+.+|+++.... ......+.++++++++.+
T Consensus 42 ~~~~~~HGT~vagiiag~~~----------~~~~~GiAp~a~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 103 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARD----------GGGMHGVAPDATLYSARASASAGS--------TFSDADIAAAYDFLAASG 103 (267)
T ss_pred CCCCCChHHHHHHHHhcCcC----------CCCcccCCcCCEEEEEeccCCCCc--------ccchHHHHHHHHHHHhCC
Confidence 45788999999999998832 245789999999999999987621 466788999999999999
Q ss_pred CcEEEecccCCCCCC-----------CcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---------ccCCCccEEec
Q 047417 236 VDIITVSLGYDKIAD-----------FLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTI---------NNMAPWMLTVG 295 (458)
Q Consensus 236 ~~VIn~SlG~~~~~~-----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~a~~vitVg 295 (458)
++|||||||...... .....+...+..+.++|+++|+||||++...... +...+++|+||
T Consensus 104 ~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vg 183 (267)
T cd04848 104 VRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVV 183 (267)
T ss_pred CeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEE
Confidence 999999999983221 2456677778889999999999999999654333 23458999999
Q ss_pred ccccCcceeee--EEeC
Q 047417 296 ASTMDREFAGY--VTLG 310 (458)
Q Consensus 296 A~~~~~~~~~~--~~~g 310 (458)
|++.+.....+ ++.+
T Consensus 184 a~~~~~~~~~~~~s~~~ 200 (267)
T cd04848 184 AVDPNGTIASYSYSNRC 200 (267)
T ss_pred EecCCCCcccccccccc
Confidence 99888766555 4443
No 35
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.93 E-value=4.2e-26 Score=225.22 Aligned_cols=175 Identities=22% Similarity=0.128 Sum_probs=125.4
Q ss_pred EEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCCCC
Q 047417 81 IIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLD 160 (458)
Q Consensus 81 ~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~ 160 (458)
+|||||||||.+||+|... +.....+... ...+.|..
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~~-----------------~~~~~d~~ 38 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSDE-----------------PGWTADDL 38 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hccccccccC-----------------CCCcCCCC
Confidence 7999999999999999753 1111111100 01156889
Q ss_pred CChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcC---Cc
Q 047417 161 GHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDG---VD 237 (458)
Q Consensus 161 gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g---~~ 237 (458)
||||||||||++.... .....|+||+|+|+.+|++..... . .+....+++++||+|+++.+ ++
T Consensus 39 gHGT~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~----~-~~~~~~~~~~~ai~~a~~~~~~~~~ 104 (291)
T cd04847 39 GHGTAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGE----N-DPELYGDITLRAIRRAVIQNPDIVR 104 (291)
T ss_pred CChHHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCC----C-CccChHHHHHHHHHHHHHhCCCcee
Confidence 9999999999965321 234678999999999999987620 0 01456789999999999853 49
Q ss_pred EEEecccCCCCCCC-cccHHHHHHHH-HHhCCcEEEEecCCCCCCCCC------------cccCCCccEEecccccCcce
Q 047417 238 IITVSLGYDKIADF-LSDGVVIGAFH-ATMNGVLTVAAAGNGGPEPQT------------INNMAPWMLTVGASTMDREF 303 (458)
Q Consensus 238 VIn~SlG~~~~~~~-~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~------------~~~~a~~vitVgA~~~~~~~ 303 (458)
|||||||....... ....+..++.+ +.++|++||+||||+|..... .|+.++++|+|||++.+...
T Consensus 105 ViN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~ 184 (291)
T cd04847 105 VFNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDI 184 (291)
T ss_pred EEEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccC
Confidence 99999999732211 12355566654 678999999999999976543 24457899999999998877
Q ss_pred eeeEEeCCc
Q 047417 304 AGYVTLGNN 312 (458)
Q Consensus 304 ~~~~~~g~~ 312 (458)
..+++++..
T Consensus 185 ~~~s~~~~~ 193 (291)
T cd04847 185 TDRARYSAV 193 (291)
T ss_pred CCccccccc
Confidence 766666543
No 36
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.91 E-value=2.9e-24 Score=210.53 Aligned_cols=177 Identities=33% Similarity=0.407 Sum_probs=128.9
Q ss_pred EEEEeccCCCCCCCCCC-CCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCCCCCCCCCCCC
Q 047417 81 IIGGIDSGIWPESESFS-DEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDL 159 (458)
Q Consensus 81 ~VaViDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 159 (458)
+|||||||||++||+|. .+ ....++.+.+.|.+... ......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~---------------------~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN---------------------FIWSKVPGGYNFVDGNP--------------NPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT---------------------EEEEEEEEEEETTTTBS--------------TTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC---------------------cccccccceeeccCCCC--------------CcCccccC
Confidence 69999999999999998 33 11223444555554321 12345678
Q ss_pred CCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHH-HcCCcE
Q 047417 160 DGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAI-HDGVDI 238 (458)
Q Consensus 160 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~-~~g~~V 238 (458)
.+|||||||||+|.. . .. ...+.|+||+|+|+.+|++... ......++++|++++ +.+++|
T Consensus 46 ~~HGT~va~ii~~~~-~-~~------~~~~~Gva~~a~l~~~~i~~~~----------~~~~~~~~~ai~~~~~~~~~~V 107 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NN------GPGINGVAPNAKLYSYKIFDNS----------GGTSSDLIEAIEYAVKNDGVDV 107 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SS------SSSETCSSTTSEEEEEECSSTT----------SEEHHHHHHHHHHHHHHTTSSE
T ss_pred CCccchhhhhccccc-c-cc------cccccccccccccccccccccc----------ccccccccchhhhhhhccCCcc
Confidence 899999999999984 1 11 2236889999999999997665 367888999999999 899999
Q ss_pred EEecccCCC--CCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCccEEecccccCcceeeeEEeC
Q 047417 239 ITVSLGYDK--IADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQT---INNMAPWMLTVGASTMDREFAGYVTLG 310 (458)
Q Consensus 239 In~SlG~~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~a~~vitVgA~~~~~~~~~~~~~g 310 (458)
||||||... ........+..++..+.++|+++|+||||+|..... .|+..+++|+||+++.......+++++
T Consensus 108 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~~~~~~~s~~g 184 (282)
T PF00082_consen 108 INLSFGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNNGQPASYSNYG 184 (282)
T ss_dssp EEECEEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETTSSBSTTSSBS
T ss_pred ccccccccccccccccccccccccccccccCcceeeccccccccccccccccccccccccccccccccccccccccc
Confidence 999999831 112233456667778999999999999999976543 455668999999998766555555443
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-24 Score=217.95 Aligned_cols=214 Identities=25% Similarity=0.365 Sum_probs=168.8
Q ss_pred HHHHHhCCCCeEEEEeccccccCCCC-----CC-------cc-cC-------------CCcCCC-----------CCChh
Q 047417 27 HAQQLANHPEVVSVFLNKPTKKLTTG-----AW-------NF-LG-------------LEKDNV-----------IPSNS 69 (458)
Q Consensus 27 ~~~~L~~~p~V~~v~~~~~~~~~~~~-----~~-------~~-~g-------------~~~~~~-----------~~~~~ 69 (458)
+++.|..+|.|+.|.|.+.+...... .+ .+ .| +...++ ..++-
T Consensus 113 ~ierLe~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~ 192 (1033)
T KOG4266|consen 113 EIERLEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADH 192 (1033)
T ss_pred eeeehhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhh
Confidence 57899999999999998776432100 00 00 00 011111 25788
Q ss_pred hhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCCcCC
Q 047417 70 TWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDI 149 (458)
Q Consensus 70 ~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~~~~ 149 (458)
+|..+++|++|+|||.|||+..+||.|+.-. .--++..
T Consensus 193 LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvK---------------------------ERTNWTN--------------- 230 (1033)
T KOG4266|consen 193 LWKKGYTGAKVKVAIFDTGLRADHPHFRNVK---------------------------ERTNWTN--------------- 230 (1033)
T ss_pred HHhccccCCceEEEEeecccccCCccccchh---------------------------hhcCCcC---------------
Confidence 9999999999999999999999999998420 0001111
Q ss_pred CCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHH
Q 047417 150 LPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFD 229 (458)
Q Consensus 150 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~ 229 (458)
...-.|..||||.|||+|||.. .-.|.||++.|+++|||.+.. -.++++.+.|+.
T Consensus 231 ---E~tLdD~lgHGTFVAGvia~~~-------------ec~gfa~d~e~~~frvft~~q---------VSYTSWFLDAFN 285 (1033)
T KOG4266|consen 231 ---EDTLDDNLGHGTFVAGVIAGRN-------------ECLGFASDTEIYAFRVFTDAQ---------VSYTSWFLDAFN 285 (1033)
T ss_pred ---ccccccCcccceeEeeeeccch-------------hhcccCCccceeEEEeeccce---------eehhhHHHHHHH
Confidence 0123467899999999999872 246799999999999998874 578999999999
Q ss_pred HHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCC--CccEEecccccCcceeeeE
Q 047417 230 DAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMA--PWMLTVGASTMDREFAGYV 307 (458)
Q Consensus 230 ~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a--~~vitVgA~~~~~~~~~~~ 307 (458)
+|+...+||+|+|+|++ ++.+.|+-+.+....+.+|++|.|+||+||-+++..+++ ..||.||-.+.++.++.|+
T Consensus 286 YAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdfdD~IA~FS 362 (1033)
T KOG4266|consen 286 YAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDFDDHIASFS 362 (1033)
T ss_pred HHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccccchhhhhc
Confidence 99999999999999998 478888888888899999999999999999999999876 5799999999999999888
Q ss_pred EeC
Q 047417 308 TLG 310 (458)
Q Consensus 308 ~~g 310 (458)
+.|
T Consensus 363 SRG 365 (1033)
T KOG4266|consen 363 SRG 365 (1033)
T ss_pred cCC
Confidence 765
No 38
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.86 E-value=1e-20 Score=179.41 Aligned_cols=129 Identities=33% Similarity=0.351 Sum_probs=106.0
Q ss_pred CCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHH-H
Q 047417 155 TGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAI-H 233 (458)
Q Consensus 155 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~-~ 233 (458)
...+..+||||||++|++... .....|+||+++|+.+|+..... ......+++++++++ .
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~----------~~~~~g~a~~a~i~~~~~~~~~~---------~~~~~~~~~ai~~~~~~ 99 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASAN----------NGGGVGVAPGAKLIPVKVLDGDG---------SGSSSDIAAAIDYAAAD 99 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCC----------CCCCEEeCCCCEEEEEEEecCCC---------CcCHHHHHHHHHHHHhc
Confidence 345678999999999998732 22238899999999999987762 467889999999999 8
Q ss_pred cCCcEEEecccCCCCCCCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CcccCCCccEEecccccCccee
Q 047417 234 DGVDIITVSLGYDKIADFLSDGVVIGAFHATMN-GVLTVAAAGNGGPEPQ---TINNMAPWMLTVGASTMDREFA 304 (458)
Q Consensus 234 ~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~a~~vitVgA~~~~~~~~ 304 (458)
.+++|||||||.... .....+...+..+.++ |+++|+|+||.+.... ..++..+++|+||+++.+....
T Consensus 100 ~~~~iin~S~g~~~~--~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~ 172 (241)
T cd00306 100 QGADVINLSLGGPGS--PPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPA 172 (241)
T ss_pred cCCCEEEeCCCCCCC--CCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCcc
Confidence 999999999999822 1356677788888887 9999999999997765 4677889999999998876554
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.76 E-value=1.3e-18 Score=167.30 Aligned_cols=122 Identities=23% Similarity=0.217 Sum_probs=88.8
Q ss_pred CCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHH--HH
Q 047417 156 GRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDA--IH 233 (458)
Q Consensus 156 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a--~~ 233 (458)
..|.++|||||||||||. .|++|+++|+..++.. ...+.+.++++|+ .+
T Consensus 33 ~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~-------------~~~~~~~~~i~~~~~~~ 83 (247)
T cd07488 33 NNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGI-------------KSNNGQWQECLEAQQNG 83 (247)
T ss_pred CCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCC-------------CCCCccHHHHHHHHHhc
Confidence 457899999999999986 2367999998755421 1223456677777 56
Q ss_pred cCCcEEEecccCCCCCC-----CcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC-----CcccCCCccEEecccccCcc
Q 047417 234 DGVDIITVSLGYDKIAD-----FLSDGVVIGAFHATMN-GVLTVAAAGNGGPEPQ-----TINNMAPWMLTVGASTMDRE 302 (458)
Q Consensus 234 ~g~~VIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~a~~vitVgA~~~~~~ 302 (458)
.+++|||||||...... .....+..++..+..+ |+++|+||||+|.+.. ..+..++++|+|||++..+.
T Consensus 84 ~gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~ 163 (247)
T cd07488 84 NNVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD 163 (247)
T ss_pred CCceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC
Confidence 79999999999873322 1234567777776665 9999999999997532 23446789999999988775
Q ss_pred eeee
Q 047417 303 FAGY 306 (458)
Q Consensus 303 ~~~~ 306 (458)
...+
T Consensus 164 ~~~~ 167 (247)
T cd07488 164 RFFA 167 (247)
T ss_pred ccee
Confidence 4433
No 40
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.3e-17 Score=170.20 Aligned_cols=188 Identities=24% Similarity=0.276 Sum_probs=142.0
Q ss_pred Chhhhcc--CCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCC
Q 047417 67 SNSTWER--ARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRN 144 (458)
Q Consensus 67 ~~~~~~~--~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~ 144 (458)
....|.. +.+|+||+|+|||+||+..||+|.+... ..++|.+...
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~~~~~~~~~------- 175 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV--------------------------AGGDFVDGDP------- 175 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhcccc--------------------------cccccccCCC-------
Confidence 4567877 8999999999999999999999986410 0122222211
Q ss_pred CCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHH
Q 047417 145 PAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDT 224 (458)
Q Consensus 145 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i 224 (458)
.....|..+|||||+|++++... .+...+.|++|+++++.++++.... +....+++
T Consensus 176 --------~~~~~d~~~hGt~vag~ia~~~~--------~~~~~~~g~a~~~~~~~~~~~~~~~--------g~~~~~~~ 231 (508)
T COG1404 176 --------EPPFLDDNGHGTHVAGTIAAVIF--------DNGAGVAGVAPGAKLLLVKVLGSGG--------GSGELSDV 231 (508)
T ss_pred --------CCCCCCCCCCcceeeeeeeeecc--------cCCCccccccCCCcEEEEEeccCCC--------CcccHHHH
Confidence 00246889999999999998410 1223378899999999999998652 25777888
Q ss_pred HHHHHHHHHcC--CcEEEecccCCCCCCCcccHHHHHHHHHHhCC-cEEEEecCCCCCCCC----CcccCC--CccEEec
Q 047417 225 IEAFDDAIHDG--VDIITVSLGYDKIADFLSDGVVIGAFHATMNG-VLTVAAAGNGGPEPQ----TINNMA--PWMLTVG 295 (458)
Q Consensus 225 ~~ai~~a~~~g--~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~a--~~vitVg 295 (458)
+++++++++.+ +++||||+|.. ........+..++..+...| +++|+|+||++.+.. .++... +.+++|+
T Consensus 232 ~~~i~~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~ 310 (508)
T COG1404 232 AEGIEGAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVG 310 (508)
T ss_pred HHHHHHHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEe
Confidence 99999999999 99999999985 23345567777888887777 999999999997652 334433 4899999
Q ss_pred ccccCcceeeeEEeCCc
Q 047417 296 ASTMDREFAGYVTLGNN 312 (458)
Q Consensus 296 A~~~~~~~~~~~~~g~~ 312 (458)
|++....+..+++.|..
T Consensus 311 a~~~~~~~~~~s~~g~~ 327 (508)
T COG1404 311 ALDLSDTVASFSNDGSP 327 (508)
T ss_pred cCCCCCccccccccCCC
Confidence 99886778888888764
No 41
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.7e-16 Score=162.45 Aligned_cols=126 Identities=28% Similarity=0.282 Sum_probs=96.4
Q ss_pred CCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 047417 159 LDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDI 238 (458)
Q Consensus 159 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~V 238 (458)
..-||||||||++|+.... ....|+||+|||+.+++.+..- |.--+...+.+|+..++++.+||
T Consensus 309 Sg~HGTHVAgIa~anhpe~---------p~~NGvAPgaqIvSl~IGD~RL-------gsMETgtaltRA~~~v~e~~vDi 372 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET---------PELNGVAPGAQIVSLKIGDGRL-------GSMETGTALTRAMIEVIEHNVDI 372 (1304)
T ss_pred CCCCcceehhhhccCCCCC---------ccccCCCCCCEEEEEEecCccc-------cccccchHHHHHHHHHHHhcCCE
Confidence 4569999999999995332 2456799999999999976441 11234557899999999999999
Q ss_pred EEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccC---CCccEEecccccC
Q 047417 239 ITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNM---APWMLTVGASTMD 300 (458)
Q Consensus 239 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---a~~vitVgA~~~~ 300 (458)
||||+|-...-+.....++..-..+.++|+++|.||||.||-.++++++ ..+||.|||--..
T Consensus 373 INmSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp 437 (1304)
T KOG1114|consen 373 INMSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSP 437 (1304)
T ss_pred EEeccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCH
Confidence 9999998743333334444444446789999999999999998888763 4689999997543
No 42
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.56 E-value=1.2e-14 Score=128.33 Aligned_cols=108 Identities=30% Similarity=0.366 Sum_probs=81.2
Q ss_pred CCCcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-c-cCCC--ccc-c
Q 047417 326 RKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-G-ASGT--FSA-S 395 (458)
Q Consensus 326 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~-~~g~--~~~-~ 395 (458)
....++|+.+. |.+.++...+++||||||+| .+|+.+++++||+|+|| + .++. +.. .
T Consensus 25 ~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEccC-------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 45778888643 44455556789999999998 68999999999999999 4 3331 111 2
Q ss_pred ccCCCeEeecHHHHHHHHHHHhcCCCcEEEEeeCceeecccCCCccccccCCCCCC
Q 047417 396 YGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNR 451 (458)
Q Consensus 396 ~~~iP~~~I~~~~G~~L~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~FSS~GP~~ 451 (458)
...||+++|++++|+.|++++++ .+ +|.+..+.. ..+.+.++.||||||..
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~--~~--~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES--SK--KLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC--CC--eEEEEeccc-cccCCccccccCcCCCC
Confidence 35799999999999999999987 34 444444443 45678899999999964
No 43
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.45 E-value=8.5e-13 Score=113.83 Aligned_cols=114 Identities=37% Similarity=0.583 Sum_probs=87.5
Q ss_pred EEeCCceEEeecccc-cCCCCCCcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe------chhhHHHHhc
Q 047417 307 VTLGNNKRLRGASLS-IDMPRKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH------EEKGYEAAKT 379 (458)
Q Consensus 307 ~~~g~~~~~~g~~~~-~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r------~~k~~~a~~a 379 (458)
+.+||++++.|++++ +.. ..+++++..... .......|.+..++..+++||||||+| .+|..+++++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAA 75 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHc
Confidence 568999999999998 222 467888733211 234457899887777899999999998 3789999999
Q ss_pred CceEEEe-cc-CC--CccccccCCCeEeecHHHHHHHHHHHhcCCCcEEEE
Q 047417 380 GAVAMIT-GA-SG--TFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFM 426 (458)
Q Consensus 380 GA~gvii-~~-~g--~~~~~~~~iP~~~I~~~~G~~L~~~~~~~~~~~~~i 426 (458)
||+|+|+ +. .+ ........||+++|+.++|+.|++|++++..++++|
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~i 126 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTATI 126 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCcceeC
Confidence 9999999 43 23 222234679999999999999999999887766553
No 44
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.7e-13 Score=129.68 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=116.5
Q ss_pred CChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCC
Q 047417 66 PSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNP 145 (458)
Q Consensus 66 ~~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~ 145 (458)
++..+|.++++|++|++||+|.||||.||+++.+ |+ --..++|..+.+
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn------aeasydfssndp-------- 196 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN------AEASYDFSSNDP-------- 196 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC------ceeecccccCCC--------
Confidence 4678999999999999999999999999999743 10 112233432211
Q ss_pred CcCCCCCCCCCC----CCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCH
Q 047417 146 AFDILPKLKTGR----DLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTE 221 (458)
Q Consensus 146 ~~~~~~~~~~~~----d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~ 221 (458)
.+.|+ -.++|||.|||-+++...+ +..| .|||++.++..+|+++. -+.
T Consensus 197 -------fpyprytddwfnshgtrcagev~aardn--gicg-------vgvaydskvagirmldq------------pym 248 (629)
T KOG3526|consen 197 -------FPYPRYTDDWFNSHGTRCAGEVVAARDN--GICG-------VGVAYDSKVAGIRMLDQ------------PYM 248 (629)
T ss_pred -------CCCCcccchhhhccCccccceeeeeccC--Ccee-------eeeeeccccceeeecCC------------chh
Confidence 22222 2689999999998876433 3444 78999999999999864 466
Q ss_pred HHHHHHHHHHHH-cCCcEEEecccCCCCCCCcc---cHHHHHHHHHHh-----CCcEEEEecCCCCCCCCCc---ccCCC
Q 047417 222 QDTIEAFDDAIH-DGVDIITVSLGYDKIADFLS---DGVVIGAFHATM-----NGVLTVAAAGNGGPEPQTI---NNMAP 289 (458)
Q Consensus 222 ~~i~~ai~~a~~-~g~~VIn~SlG~~~~~~~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~~---~~~a~ 289 (458)
.++++|-...-. ..++|.+-|||........+ +...+|+.+-++ .|-+.|+|.|..|.+...- -+.+-
T Consensus 249 tdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasm 328 (629)
T KOG3526|consen 249 TDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASM 328 (629)
T ss_pred hhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhhe
Confidence 777776333222 35789999999884332222 333344444333 3669999999988542221 12455
Q ss_pred ccEEecccccCc
Q 047417 290 WMLTVGASTMDR 301 (458)
Q Consensus 290 ~vitVgA~~~~~ 301 (458)
|.|++-+.-+++
T Consensus 329 wtisinsaindg 340 (629)
T KOG3526|consen 329 WTISINSAINDG 340 (629)
T ss_pred EEEEeehhhcCC
Confidence 778877655554
No 45
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.21 E-value=5.6e-11 Score=102.04 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=69.5
Q ss_pred CcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-cc-CCC-----ccc-
Q 047417 328 SYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GA-SGT-----FSA- 394 (458)
Q Consensus 328 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~-~g~-----~~~- 394 (458)
+-+|++... ....+|.+.+++..+++||||||+| .+|+.+|+++||+++|| |. ++. +..
T Consensus 18 ~~~lv~~~~--------~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~ 89 (122)
T cd04816 18 TAPLVPLDP--------ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAP 89 (122)
T ss_pred EEEEEEcCC--------CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCC
Confidence 446777432 2346799887777899999999999 77999999999999999 42 221 111
Q ss_pred -cccCCCeEeecHHHHHHHHHHHhcCCCcEEE
Q 047417 395 -SYGFLPVTKLKIKDFEAVLDYIKSTKDAKAF 425 (458)
Q Consensus 395 -~~~~iP~~~I~~~~G~~L~~~~~~~~~~~~~ 425 (458)
....||+++|++++|++|+++++++.+++++
T Consensus 90 ~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~ 121 (122)
T cd04816 90 NIDLKVPVGVITKAAGAALRRRLGAGETLELD 121 (122)
T ss_pred CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEe
Confidence 3457999999999999999999988765443
No 46
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.19 E-value=5.9e-11 Score=120.74 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=81.3
Q ss_pred eeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHc---CCcEEEecccCCCCC--CCcccHHHHHHHH
Q 047417 188 TAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHD---GVDIITVSLGYDKIA--DFLSDGVVIGAFH 262 (458)
Q Consensus 188 ~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~---g~~VIn~SlG~~~~~--~~~~~~~~~a~~~ 262 (458)
.+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||||||..... ..+...++.++.+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~-------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~ 148 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV-------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQ 148 (361)
T ss_pred HHHhccCCCeEEEEEECCcC-------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHH
Confidence 36789999999999997542 34567788888887 999999999997221 1123667888889
Q ss_pred HHhCCcEEEEecCCCCCCCC-----------CcccCCCccEEecccccCcce
Q 047417 263 ATMNGVLTVAAAGNGGPEPQ-----------TINNMAPWMLTVGASTMDREF 303 (458)
Q Consensus 263 a~~~Gi~vV~AAGN~G~~~~-----------~~~~~a~~vitVgA~~~~~~~ 303 (458)
|..+||.||+|+||+|.... .+|+..|+|++||+++.....
T Consensus 149 a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~ 200 (361)
T cd04056 149 AAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGG 200 (361)
T ss_pred HHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCC
Confidence 99999999999999997643 356788999999999876543
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.12 E-value=3.1e-10 Score=99.21 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=66.0
Q ss_pred ccCCCCCCCCC--CCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-c-cC-C--Ccc--c-cccCCCeEeecHHHH
Q 047417 345 KDARSCKPGTL--DRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-G-AS-G--TFS--A-SYGFLPVTKLKIKDF 409 (458)
Q Consensus 345 ~~~~~c~~~~~--~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~-~~-g--~~~--~-~~~~iP~~~I~~~~G 409 (458)
....+|.+... ...+++||||||+| .+|+.+|+++||++||| | .+ + .+. . ....||+++|++++|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34578998776 56789999999999 89999999999999999 4 33 2 221 1 235799999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 047417 410 EAVLDYIKSTKDAKAFM 426 (458)
Q Consensus 410 ~~L~~~~~~~~~~~~~i 426 (458)
+.|+++++++++++++|
T Consensus 122 ~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 122 MEILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHHcCCcEEEeC
Confidence 99999999988766653
No 48
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.12 E-value=2.2e-10 Score=97.05 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccCC--Ccc-----
Q 047417 327 KSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GASG--TFS----- 393 (458)
Q Consensus 327 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~g--~~~----- 393 (458)
..+||+.. .+...|.+.++...+++|||+|++| .+|+.+|+++||++||| |+.. ...
T Consensus 20 ~~~~~~~~----------~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~ 89 (120)
T cd02129 20 TLLPLRNL----------TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSE 89 (120)
T ss_pred cceeeecC----------CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
Confidence 46677763 3446799888777789999999999 89999999999999999 4332 111
Q ss_pred ccccCCCeEeecHHHHHHHHHHHhcC
Q 047417 394 ASYGFLPVTKLKIKDFEAVLDYIKST 419 (458)
Q Consensus 394 ~~~~~iP~~~I~~~~G~~L~~~~~~~ 419 (458)
....+||+++|++++|+.|++.+.++
T Consensus 90 ~~~v~IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 90 YEKIDIPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred CcCCcccEEEEeHHHHHHHHHHhccC
Confidence 13467999999999999999998753
No 49
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.11 E-value=6e-10 Score=95.63 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccC--CCc---cc--cccCCCeEeecHHHHHHHHH
Q 047417 348 RSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GAS--GTF---SA--SYGFLPVTKLKIKDFEAVLD 414 (458)
Q Consensus 348 ~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~--g~~---~~--~~~~iP~~~I~~~~G~~L~~ 414 (458)
..|.+.++ +.+++||||||+| .+|+.+|+++||+++|| |.. +.+ .. ....||+++|++++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46987655 3579999999999 78999999999999999 433 211 11 23579999999999999999
Q ss_pred HHhcCCCcEEEE
Q 047417 415 YIKSTKDAKAFM 426 (458)
Q Consensus 415 ~~~~~~~~~~~i 426 (458)
+++++++++++|
T Consensus 111 ~l~~g~~v~~~~ 122 (122)
T cd02130 111 ALANGGEVSANL 122 (122)
T ss_pred HHhcCCcEEEeC
Confidence 999998776653
No 50
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.10 E-value=6.3e-11 Score=97.83 Aligned_cols=70 Identities=27% Similarity=0.410 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-c-cCC------CccccccCCCeEeecHHHHHHHH
Q 047417 347 ARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-G-ASG------TFSASYGFLPVTKLKIKDFEAVL 413 (458)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~-~~g------~~~~~~~~iP~~~I~~~~G~~L~ 413 (458)
...|.+.+....+++||||||+| .+|+.+|+++||+|+|| + .+. ........||+++|+.++|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 34566667778899999999999 78999999999999999 6 111 12234578999999999999999
Q ss_pred HHH
Q 047417 414 DYI 416 (458)
Q Consensus 414 ~~~ 416 (458)
+||
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 986
No 51
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.08 E-value=5.9e-10 Score=94.80 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccC-C---C-c--cc----cccCCCeEeecHHHH
Q 047417 347 ARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GAS-G---T-F--SA----SYGFLPVTKLKIKDF 409 (458)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~-g---~-~--~~----~~~~iP~~~I~~~~G 409 (458)
...|.+.. ...+++|||+|++| .+|+.+|+++||++||| |+. + . + .. ....||+++|++++|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798754 35689999999999 89999999999999999 432 2 1 1 12 235799999999999
Q ss_pred HHHHHHHhcCCCcEEEEe
Q 047417 410 EAVLDYIKSTKDAKAFMT 427 (458)
Q Consensus 410 ~~L~~~~~~~~~~~~~i~ 427 (458)
+.|++.+.++..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999988776663
No 52
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.05 E-value=9.2e-10 Score=95.13 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=67.2
Q ss_pred cceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-c-cCCCc---cccccC
Q 047417 329 YPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-G-ASGTF---SASYGF 398 (458)
Q Consensus 329 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~-~~g~~---~~~~~~ 398 (458)
+|++..... .......|.+.+.+..+++|||+||+| .+|+.||+++||++||| | .++.+ ......
T Consensus 28 ~p~~~~~~~-----~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~ 102 (129)
T cd02124 28 LPLWALSLD-----TSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADS 102 (129)
T ss_pred ceEEEeecc-----cCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcc
Confidence 676654322 134557899876666689999999999 79999999999999999 4 33322 122345
Q ss_pred CCeEeecHHHHHHHHHHHhcCCCcEEE
Q 047417 399 LPVTKLKIKDFEAVLDYIKSTKDAKAF 425 (458)
Q Consensus 399 iP~~~I~~~~G~~L~~~~~~~~~~~~~ 425 (458)
+|.+++ +++|++|++.+++++.++++
T Consensus 103 ~~~~~~-~~~G~~l~~~l~~G~~vtv~ 128 (129)
T cd02124 103 IIAAVT-PEDGEAWIDALAAGSNVTVD 128 (129)
T ss_pred eeeEEe-HHHHHHHHHHHhcCCeEEEe
Confidence 666666 99999999999988765554
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.05 E-value=7.6e-10 Score=94.38 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=63.4
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-c-cCC--Ccc----ccccCCCeEeecHHHHHH
Q 047417 345 KDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-G-ASG--TFS----ASYGFLPVTKLKIKDFEA 411 (458)
Q Consensus 345 ~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~-~~g--~~~----~~~~~iP~~~I~~~~G~~ 411 (458)
.+...|.+... ..+++||||||+| .+|+.+++++||+|+|| + ... .+. .....||+++|++++|+.
T Consensus 25 ~~~~~C~~~~~-~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTN-AAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCc-CCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 44568988776 4579999999998 58999999999999999 3 222 221 123579999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 047417 412 VLDYIKSTKDAKAF 425 (458)
Q Consensus 412 L~~~~~~~~~~~~~ 425 (458)
|++|++.+..++++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999988766554
No 54
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.04 E-value=8.3e-10 Score=96.86 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccCC---Cccc------cccCCCeEeecHHHHHH
Q 047417 347 ARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GASG---TFSA------SYGFLPVTKLKIKDFEA 411 (458)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~g---~~~~------~~~~iP~~~I~~~~G~~ 411 (458)
.++|.+.+ .+++|||+||+| .+|+.||+++||++||| |... .+.. ....||+++|++.+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 379999999999 79999999999999999 4332 2211 13589999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 047417 412 VLDYIKSTKDAKAF 425 (458)
Q Consensus 412 L~~~~~~~~~~~~~ 425 (458)
|+++++++..++++
T Consensus 125 L~~~l~~g~~Vtv~ 138 (139)
T cd02132 125 LNKSLDQGKKVEVL 138 (139)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999998765543
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.01 E-value=1.3e-09 Score=94.00 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=61.3
Q ss_pred CCCCCCCCCC--CC----CCCCcEEEEEe-----chhhHHHHhcCceEEEe-cc-CCCcc-------------ccccCCC
Q 047417 347 ARSCKPGTLD--RK----KVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GA-SGTFS-------------ASYGFLP 400 (458)
Q Consensus 347 ~~~c~~~~~~--~~----~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~-~g~~~-------------~~~~~iP 400 (458)
.++|.+.+.. +. ...+||+||+| .+|+.+|+++||+++|| |. ++.+. .....||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4679876542 11 37899999999 79999999999999999 43 33221 1124699
Q ss_pred eEeecHHHHHHHHHHHhcCCCcEEE
Q 047417 401 VTKLKIKDFEAVLDYIKSTKDAKAF 425 (458)
Q Consensus 401 ~~~I~~~~G~~L~~~~~~~~~~~~~ 425 (458)
+++|++++|+.|++.+.++..++++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999998876554
No 56
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.00 E-value=1.1e-09 Score=94.13 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=62.9
Q ss_pred cCCCCCCCC--CCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccCC----Cccc-----cccCCCeEeecHHH
Q 047417 346 DARSCKPGT--LDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GASG----TFSA-----SYGFLPVTKLKIKD 408 (458)
Q Consensus 346 ~~~~c~~~~--~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~g----~~~~-----~~~~iP~~~I~~~~ 408 (458)
...+|.+.. +...+++||||||+| .+|+.+|+++||+|+|| +... .... ....||+++|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345688776 667789999999998 58999999999999999 3221 1111 34579999999999
Q ss_pred HHHHHHHHhcCCCcEEE
Q 047417 409 FEAVLDYIKSTKDAKAF 425 (458)
Q Consensus 409 G~~L~~~~~~~~~~~~~ 425 (458)
|+.|++++..+++++++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999987765443
No 57
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.00 E-value=1.3e-09 Score=93.99 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-c-cCCC------cc---c-----cccCCCeEeec
Q 047417 347 ARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-G-ASGT------FS---A-----SYGFLPVTKLK 405 (458)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~-~~g~------~~---~-----~~~~iP~~~I~ 405 (458)
...|.+... ..+++|||+||+| .+|+.+|+++||++||| | .++. +. . +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 5579999999999 88999999999999999 3 3321 11 1 23579999999
Q ss_pred HHHHHHHHHHHhcCCCcEEE
Q 047417 406 IKDFEAVLDYIKSTKDAKAF 425 (458)
Q Consensus 406 ~~~G~~L~~~~~~~~~~~~~ 425 (458)
+.+|+.|+++++.++.+++.
T Consensus 106 ~~dG~~L~~~l~~~~~~~~~ 125 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEVL 125 (126)
T ss_pred HHHHHHHHHHHHhCCceEEe
Confidence 99999999999998766554
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.93 E-value=2.9e-09 Score=92.78 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCCCCCCCcEEEEEe---c-------hhhHHHHhcCceEEEe-cc---CCCc----ccc--ccCCCeEeecHHHHHHHHH
Q 047417 355 LDRKKVQGRILVCLH---E-------EKGYEAAKTGAVAMIT-GA---SGTF----SAS--YGFLPVTKLKIKDFEAVLD 414 (458)
Q Consensus 355 ~~~~~~~gkivlv~r---~-------~k~~~a~~aGA~gvii-~~---~g~~----~~~--~~~iP~~~I~~~~G~~L~~ 414 (458)
+.+.+++|||+||+| . +|+++|+++||+|||| |+ ++.+ ... ..+||+++|++++|++|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 446689999999999 3 7999999999999999 43 3421 111 4589999999999999999
Q ss_pred HHhcC
Q 047417 415 YIKST 419 (458)
Q Consensus 415 ~~~~~ 419 (458)
++.++
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 98654
No 59
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.89 E-value=1.2e-08 Score=88.24 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=62.8
Q ss_pred CCCcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe-------chhhHHHHhcCceEEEe-c-cCCCcc---
Q 047417 326 RKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH-------EEKGYEAAKTGAVAMIT-G-ASGTFS--- 393 (458)
Q Consensus 326 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r-------~~k~~~a~~aGA~gvii-~-~~g~~~--- 393 (458)
..+.++|+.+.. .+.++...+++|||||++| .+|+.+|+++||+|+|+ + .++.+.
T Consensus 22 ~~~~~lV~~g~G-------------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~ 88 (127)
T cd04819 22 EAKGEPVDAGYG-------------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATG 88 (127)
T ss_pred CeeEEEEEeCCC-------------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccc
Confidence 346788886543 2223335579999999999 35999999999999999 4 333211
Q ss_pred ------ccccCCCeEeecHHHHHHHHHHHhcCCCc
Q 047417 394 ------ASYGFLPVTKLKIKDFEAVLDYIKSTKDA 422 (458)
Q Consensus 394 ------~~~~~iP~~~I~~~~G~~L~~~~~~~~~~ 422 (458)
.....||++.|+.+||+.|++.++.++.+
T Consensus 89 ~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~ 123 (127)
T cd04819 89 DEGTEDGPPSPIPAASVSGEDGLRLARVAERNDTL 123 (127)
T ss_pred cccccCCCCCCCCEEEEeHHHHHHHHHHHhcCCce
Confidence 12367999999999999999999986643
No 60
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.88 E-value=4.9e-09 Score=88.97 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=57.5
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-c-cCC-Cc---c----ccccCCCeEeecHHHH
Q 047417 345 KDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-G-ASG-TF---S----ASYGFLPVTKLKIKDF 409 (458)
Q Consensus 345 ~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~-~~g-~~---~----~~~~~iP~~~I~~~~G 409 (458)
.+.++|.+. +.++++||||||+| .+|+.+|+++||++||| | .++ .+ . ....+||+++|++++|
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345689876 55789999999999 79999999999999999 4 332 12 1 1235799999999999
Q ss_pred HHHHHHHhc
Q 047417 410 EAVLDYIKS 418 (458)
Q Consensus 410 ~~L~~~~~~ 418 (458)
++|++++.+
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999998764
No 61
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.80 E-value=1.8e-08 Score=89.80 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=60.8
Q ss_pred CCCCCCCCCC---CCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccC-CC---ccc-----cccCCCeEeecHHH
Q 047417 347 ARSCKPGTLD---RKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GAS-GT---FSA-----SYGFLPVTKLKIKD 408 (458)
Q Consensus 347 ~~~c~~~~~~---~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~-g~---~~~-----~~~~iP~~~I~~~~ 408 (458)
.++|.+.... ..++.|||+||+| .+|+.||+++||++||| |.. +. +.. ....||+++|++++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 4679876653 3789999999999 89999999999999999 433 22 221 13589999999999
Q ss_pred HHHHHHHHhcCCC
Q 047417 409 FEAVLDYIKSTKD 421 (458)
Q Consensus 409 G~~L~~~~~~~~~ 421 (458)
|+.|+++++.++.
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999998765
No 62
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.26 E-value=1.4e-06 Score=68.82 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=40.5
Q ss_pred cccceeEEecceeeeEEEEeCHHHHHHHhCCCCeEEEEeccccccC
Q 047417 4 ARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKL 49 (458)
Q Consensus 4 ~~~~v~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 49 (458)
...++.+.|+..||||+++++++++++|+++|+|++|+||+.++++
T Consensus 37 ~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 37 INAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred cCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 4678999999999999999999999999999999999999988753
No 63
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.24 E-value=3.1e-06 Score=73.80 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=54.2
Q ss_pred CCCCCCCcEEEEEe-----------chh-------hHHHHhcCceEEEe-c-cCC--------Ccc--ccccCCCeEeec
Q 047417 356 DRKKVQGRILVCLH-----------EEK-------GYEAAKTGAVAMIT-G-ASG--------TFS--ASYGFLPVTKLK 405 (458)
Q Consensus 356 ~~~~~~gkivlv~r-----------~~k-------~~~a~~aGA~gvii-~-~~g--------~~~--~~~~~iP~~~I~ 405 (458)
...+++|||||++| .+| .+.|+++||+++|+ + .++ .+. .....||++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35589999999988 234 69999999999999 4 211 111 223569999999
Q ss_pred HHHHHHHHHHHhcCCCcEEE
Q 047417 406 IKDFEAVLDYIKSTKDAKAF 425 (458)
Q Consensus 406 ~~~G~~L~~~~~~~~~~~~~ 425 (458)
.+||+.|...++++..++++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 114 VEDADMLERLAARGKPIRVN 133 (134)
T ss_pred hhcHHHHHHHHhCCCCeEEe
Confidence 99999999999998766554
No 64
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.00 E-value=7.9e-06 Score=74.35 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=49.7
Q ss_pred CCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccC--------------------C-Cccc---------------
Q 047417 357 RKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GAS--------------------G-TFSA--------------- 394 (458)
Q Consensus 357 ~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~--------------------g-~~~~--------------- 394 (458)
..+++||||||+| .+|+.+|+++||+|||| +.+ | .+.+
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4589999999998 78999999999999999 321 1 0100
Q ss_pred -cccCCCeEeecHHHHHHHHHHHhcC
Q 047417 395 -SYGFLPVTKLKIKDFEAVLDYIKST 419 (458)
Q Consensus 395 -~~~~iP~~~I~~~~G~~L~~~~~~~ 419 (458)
....||++-|+.++++.|++.|.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1246999999999999999988643
No 65
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.66 E-value=0.00022 Score=63.13 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=57.1
Q ss_pred CcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEec-----------------------hhhHHHHhcCceEE
Q 047417 328 SYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLHE-----------------------EKGYEAAKTGAVAM 384 (458)
Q Consensus 328 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r~-----------------------~k~~~a~~aGA~gv 384 (458)
+-|+|+.+.. .....|...++...|++||||||.|. .|+.+|+++||+||
T Consensus 21 tg~lVfvGyG-------i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYG-------ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCC-------cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 5688887754 22345777777778999999999762 59999999999999
Q ss_pred Ee-ccCC------CccccccCCCeEeecHHHHHHHHHHHh
Q 047417 385 IT-GASG------TFSASYGFLPVTKLKIKDFEAVLDYIK 417 (458)
Q Consensus 385 ii-~~~g------~~~~~~~~iP~~~I~~~~G~~L~~~~~ 417 (458)
|| +.+. ...+....-..++|+...-+.|+..+.
T Consensus 94 Iv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (151)
T cd04822 94 IVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTAAE 133 (151)
T ss_pred EEEeCCcccCcccccccccCccceEEechHHHHHHhhhhh
Confidence 99 4322 111111111267888888888887533
No 66
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=97.54 E-value=0.00016 Score=68.08 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=27.8
Q ss_pred CCCCCCcEEEEEe-----chhhHHHHhcCceEEEe
Q 047417 357 RKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT 386 (458)
Q Consensus 357 ~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii 386 (458)
..+++|||||+++ .+|+++|+++||+||||
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIi 101 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVII 101 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEE
Confidence 5689999999987 67999999999999999
No 67
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.42 E-value=0.00024 Score=61.85 Aligned_cols=56 Identities=32% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe-----------------chhhHHHHhcCceEEEe-cc
Q 047417 327 KSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH-----------------EEKGYEAAKTGAVAMIT-GA 388 (458)
Q Consensus 327 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r-----------------~~k~~~a~~aGA~gvii-~~ 388 (458)
.+-+||+.+... ....|...++...|++||||||++ .+|.++|+++||+|||+ +.
T Consensus 22 v~gelVfvGyG~-------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 22 VEAPLVFVGYGL-------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred ceEeEEEecCCc-------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 367888877542 234587777777899999999997 15999999999999999 44
Q ss_pred C
Q 047417 389 S 389 (458)
Q Consensus 389 ~ 389 (458)
+
T Consensus 95 ~ 95 (137)
T cd04820 95 P 95 (137)
T ss_pred C
Confidence 3
No 68
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=97.40 E-value=0.00049 Score=70.06 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=64.4
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-cc-CC--Cc------cccccCCCeEeecHHHH
Q 047417 345 KDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GA-SG--TF------SASYGFLPVTKLKIKDF 409 (458)
Q Consensus 345 ~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~-~g--~~------~~~~~~iP~~~I~~~~G 409 (458)
.+.+.|++. +..++||++++.| .+|+.+|+++||.+++| |+ .+ .. .....+||+++|+.++|
T Consensus 82 ~pld~cs~~---~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~ 158 (541)
T KOG2442|consen 82 DPLDSCSTL---QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDG 158 (541)
T ss_pred CCccccCCC---CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhH
Confidence 344567654 4579999999999 89999999999999999 43 22 11 12357899999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeC
Q 047417 410 EAVLDYIKSTKDAKAFMTDA 429 (458)
Q Consensus 410 ~~L~~~~~~~~~~~~~i~~~ 429 (458)
+.|......+.++++.+..+
T Consensus 159 ~~l~~~~~~~~~V~~~lYaP 178 (541)
T KOG2442|consen 159 RDLNKSTRSNDNVELALYAP 178 (541)
T ss_pred HHHHhhhccCCeEEEEEECC
Confidence 99998887777777777644
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.34 E-value=0.00037 Score=61.04 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCCcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe-----------------------chhhHHHHhcCce
Q 047417 326 RKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH-----------------------EEKGYEAAKTGAV 382 (458)
Q Consensus 326 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r-----------------------~~k~~~a~~aGA~ 382 (458)
....|+|+.+..- ....|...++...|++||||||.| ..|.++|+++||+
T Consensus 19 ~~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (142)
T cd04814 19 IKDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAA 91 (142)
T ss_pred ccceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCc
Confidence 3467899987641 234588778888899999999975 2599999999999
Q ss_pred EEEe-ccC-C-Cc-----ccc-ccCCC-eEeecHHHHHHHHHH
Q 047417 383 AMIT-GAS-G-TF-----SAS-YGFLP-VTKLKIKDFEAVLDY 415 (458)
Q Consensus 383 gvii-~~~-g-~~-----~~~-~~~iP-~~~I~~~~G~~L~~~ 415 (458)
|||+ +.. . .+ ... ...++ ...|+...+.+|.+.
T Consensus 92 gvIii~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~a~~l~~~ 134 (142)
T cd04814 92 GVLIVHELAPASYGWATWKNPAKVHPNLEAAIQRAVAVDLFEA 134 (142)
T ss_pred EEEEEeCCCcccCChhhhhcccccCCceeeEecHHHHHHHHhh
Confidence 9999 432 2 22 111 22244 346788877777653
No 70
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0017 Score=67.49 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=100.5
Q ss_pred ChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCCCC
Q 047417 67 SNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPA 146 (458)
Q Consensus 67 ~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~~~ 146 (458)
....|..+++|+++.|+|+|.|+...||+.... + -..+.+++.....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~-----------------------~~~~s~d~~~~~~--------- 68 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-Y-----------------------DPLGSYDVNRHDN--------- 68 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-c-----------------------CcceeEeeecCCC---------
Confidence 458999999999999999999999999999743 1 1223333332211
Q ss_pred cCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHH
Q 047417 147 FDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIE 226 (458)
Q Consensus 147 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ 226 (458)
.+.+..+......|||-|++-.+....+. .. ..|+++++++..++++... .+ +...
T Consensus 69 --~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--~C-------~vg~~~~~~~~g~~~l~~~-----------v~--~~~~ 124 (431)
T KOG3525|consen 69 --DPEPRCDGTNENKHGTRCAGCVAARANNL--TC-------GVGVAYNATIGGIRMLAGC-----------VS--DAVE 124 (431)
T ss_pred --CcccccCCCCccccCCCCCcccccccCCC--cC-------CCCcccCccccceeeeeee-----------cc--ccee
Confidence 12222333346899999999999874211 11 4779999999999998643 11 2222
Q ss_pred HHHHHH-HcCCcEEEecccCCCCCCC---cccHHHHHHHH-----HHhCCcEEEEecCCCCCCC
Q 047417 227 AFDDAI-HDGVDIITVSLGYDKIADF---LSDGVVIGAFH-----ATMNGVLTVAAAGNGGPEP 281 (458)
Q Consensus 227 ai~~a~-~~g~~VIn~SlG~~~~~~~---~~~~~~~a~~~-----a~~~Gi~vV~AAGN~G~~~ 281 (458)
+..... ..-.++-..|||....... .......++.. ...+|-+.|+|.||.|...
T Consensus 125 ~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 125 APSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred cccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 221111 2347899999998743211 22223333333 3346889999999988543
No 71
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.79 E-value=0.0013 Score=57.60 Aligned_cols=29 Identities=14% Similarity=-0.025 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEe-----chhhHHHHhcCceEEEe
Q 047417 358 KKVQGRILVCLH-----EEKGYEAAKTGAVAMIT 386 (458)
Q Consensus 358 ~~~~gkivlv~r-----~~k~~~a~~aGA~gvii 386 (458)
-+++|||||++. ..|+++|+++||+||||
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviI 70 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLL 70 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEE
Confidence 579999999996 89999999999999999
No 72
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.11 E-value=0.0052 Score=53.57 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=64.7
Q ss_pred cccCCCCCCCCCCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe--ccCC--Cc------cc----cccCCCeEee
Q 047417 344 DKDARSCKPGTLDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT--GASG--TF------SA----SYGFLPVTKL 404 (458)
Q Consensus 344 ~~~~~~c~~~~~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii--~~~g--~~------~~----~~~~iP~~~I 404 (458)
.++..+|.... +.-.+.|.|+|++| ..|..+++++||.++|| +.+. ++ .. +...||++++
T Consensus 71 adPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fl 149 (193)
T KOG3920|consen 71 ADPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFL 149 (193)
T ss_pred cCChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEE
Confidence 45567898753 45678999999999 78999999999999999 3222 22 22 2478999999
Q ss_pred cHHHHHHHHHHHhcCCCcEEEEeeC
Q 047417 405 KIKDFEAVLDYIKSTKDAKAFMTDA 429 (458)
Q Consensus 405 ~~~~G~~L~~~~~~~~~~~~~i~~~ 429 (458)
-..+|-.++.-|+....+.+.|.-+
T Consensus 150 lg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 150 LGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred eccceEEEehhHHHhCCccEEEecc
Confidence 9999999888888766555555543
No 73
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.015 Score=65.89 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=57.9
Q ss_pred eecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC-cEEEecccCCC--CCCC--cccHHHHHHHHHHh
Q 047417 191 GGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGV-DIITVSLGYDK--IADF--LSDGVVIGAFHATM 265 (458)
Q Consensus 191 GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~-~VIn~SlG~~~--~~~~--~~~~~~~a~~~a~~ 265 (458)
-+||+|+|..+-+- . ...+.+..|+......=. -+|-.||+... ...+ .-+.++.-...|.+
T Consensus 290 A~AP~A~I~lvvap--~-----------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasa 356 (1174)
T COG4934 290 AMAPKANIDLVVAP--N-----------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASA 356 (1174)
T ss_pred ccCccCceEEEEcC--C-----------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhc
Confidence 38999999987762 1 222223333332222111 33335666541 1122 34556667778999
Q ss_pred CCcEEEEecCCCCCCCC--------CcccCCCccEEecc
Q 047417 266 NGVLTVAAAGNGGPEPQ--------TINNMAPWMLTVGA 296 (458)
Q Consensus 266 ~Gi~vV~AAGN~G~~~~--------~~~~~a~~vitVgA 296 (458)
+||.+++|+|-+|.... .+|+..|+|.+||-
T Consensus 357 eGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 357 EGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999999999986543 24557899999998
No 74
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.86 E-value=0.019 Score=51.26 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=38.7
Q ss_pred CCCcceEecccccccccCcccCCCCCCCCCCCCCCCCcEEEEEe------------------------chhhHHHHhcCc
Q 047417 326 RKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLH------------------------EEKGYEAAKTGA 381 (458)
Q Consensus 326 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivlv~r------------------------~~k~~~a~~aGA 381 (458)
....|||+.+.+-. ... -.-.++...|++|||||+.+ ..|.+.|+++||
T Consensus 21 ~~~~elVFvGyGi~------ape-~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA 93 (157)
T cd04821 21 LKDSPLVFVGYGIV------APE-YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGA 93 (157)
T ss_pred cccCCEEEeccCcc------Ccc-cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCC
Confidence 35678898776421 001 11124567799999999996 139999999999
Q ss_pred eEEEe
Q 047417 382 VAMIT 386 (458)
Q Consensus 382 ~gvii 386 (458)
+|||+
T Consensus 94 ~gvi~ 98 (157)
T cd04821 94 AGALI 98 (157)
T ss_pred eEEEE
Confidence 99999
No 75
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.02 Score=57.09 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=57.4
Q ss_pred cCCCCCCCC---CCCCCCCCcEEEEEe-----chhhHHHHhcCceEEEe-ccCC--Ccc-----ccccCCCeEeecHHHH
Q 047417 346 DARSCKPGT---LDRKKVQGRILVCLH-----EEKGYEAAKTGAVAMIT-GASG--TFS-----ASYGFLPVTKLKIKDF 409 (458)
Q Consensus 346 ~~~~c~~~~---~~~~~~~gkivlv~r-----~~k~~~a~~aGA~gvii-~~~g--~~~-----~~~~~iP~~~I~~~~G 409 (458)
...+|++.. .....-...++|+.| .+|+.+||++|.+++|+ |+.+ .+. .....+++++|+..-|
T Consensus 61 p~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 61 PLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred CccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 346788642 224567889999999 89999999999999999 5444 222 2347899999999999
Q ss_pred HHHHHHHhcC
Q 047417 410 EAVLDYIKST 419 (458)
Q Consensus 410 ~~L~~~~~~~ 419 (458)
+.|++|....
T Consensus 141 e~l~~~~~~~ 150 (348)
T KOG4628|consen 141 ELLSSYAGRT 150 (348)
T ss_pred HHHHHhhccc
Confidence 9999986543
No 76
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=88.97 E-value=0.17 Score=21.72 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=5.3
Q ss_pred cccCCC
Q 047417 443 SFSSRG 448 (458)
Q Consensus 443 ~FSS~G 448 (458)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 699998
No 77
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=0.35 Score=53.64 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=30.4
Q ss_pred HcCCcEEEecccCCCC-CCCcccHHHHHHHHHHhCCcEEE-EecCC
Q 047417 233 HDGVDIITVSLGYDKI-ADFLSDGVVIGAFHATMNGVLTV-AAAGN 276 (458)
Q Consensus 233 ~~g~~VIn~SlG~~~~-~~~~~~~~~~a~~~a~~~Gi~vV-~AAGN 276 (458)
.-||.||+|-+|-..- +-.....+.+|+..+.+..+-+| .|=|-
T Consensus 334 APgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 334 APGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 3588999999997732 22335678888888888877544 45453
No 78
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=61.01 E-value=4.7 Score=40.21 Aligned_cols=21 Identities=43% Similarity=0.600 Sum_probs=17.1
Q ss_pred CCCccccccCCCCCC---CCCCCC
Q 047417 437 PSPAVASFSSRGPNR---IDPSII 457 (458)
Q Consensus 437 ~~~~~s~FSS~GP~~---~~p~il 457 (458)
..+.++.||||||+. +||||+
T Consensus 217 ~~~~~~~fSs~Gp~~~g~~kPdv~ 240 (311)
T cd07497 217 GSGDVVSWSSRGPSIAGDPKPDLA 240 (311)
T ss_pred CCCCccccccCCCCcccCCCCcee
Confidence 356799999999984 788874
No 79
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=36.82 E-value=17 Score=38.39 Aligned_cols=20 Identities=50% Similarity=0.904 Sum_probs=16.4
Q ss_pred CCccccccCCCCCC---CCCCCC
Q 047417 438 SPAVASFSSRGPNR---IDPSII 457 (458)
Q Consensus 438 ~~~~s~FSS~GP~~---~~p~il 457 (458)
.+.++.||||||++ +||||.
T Consensus 356 ~~~~~~~Ss~G~~~~~~~kpdi~ 378 (455)
T cd07478 356 NNSIAIFSGRGPTRDGRIKPDIA 378 (455)
T ss_pred CCcccCccCCCcCCCCCcCceEE
Confidence 45799999999985 788874
No 80
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=31.86 E-value=82 Score=32.00 Aligned_cols=56 Identities=25% Similarity=0.251 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEe-----chh--hHHHHhcCceEEEe--ccC------C----CccccccCCCeEeecHHHHHHHH
Q 047417 358 KKVQGRILVCLH-----EEK--GYEAAKTGAVAMIT--GAS------G----TFSASYGFLPVTKLKIKDFEAVL 413 (458)
Q Consensus 358 ~~~~gkivlv~r-----~~k--~~~a~~aGA~gvii--~~~------g----~~~~~~~~iP~~~I~~~~G~~L~ 413 (458)
.|+.|++++-.| .-| +..|.++||-++|| ..+ | .+...+..||+..+...+++.+.
T Consensus 86 gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy~~~s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 86 GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGYSVSSSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccccCCCCCCCcceEEeccCcchhhc
Confidence 478999998888 112 44667899999999 211 2 23446788999999888887655
No 81
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=31.37 E-value=3e+02 Score=22.81 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=45.4
Q ss_pred eeeeec-CCCeEEEEEeecCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcEEEecccCCCCCCC-cccHHHHHHHHHHh
Q 047417 188 TAKGGS-PRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADF-LSDGVVIGAFHATM 265 (458)
Q Consensus 188 ~~~GvA-P~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~-~~~~~~~a~~~a~~ 265 (458)
.+.... ++++|+.+-- +. +|....++.-++++.+.|+++|-+|-........ .-.-++.-.....+
T Consensus 29 ~F~~y~~~~~elvgf~~--Cg----------GCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~ 96 (107)
T PF08821_consen 29 AFARYDDEDVELVGFFT--CG----------GCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEE 96 (107)
T ss_pred ccccCCCCCeEEEEEee--CC----------CCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHH
Confidence 344454 4677877543 33 6888889999999999999999999887632211 11112222233334
Q ss_pred C-CcEEEE
Q 047417 266 N-GVLTVA 272 (458)
Q Consensus 266 ~-Gi~vV~ 272 (458)
+ |+-||-
T Consensus 97 ~~gi~VV~ 104 (107)
T PF08821_consen 97 KFGIEVVE 104 (107)
T ss_pred HhCCCEee
Confidence 4 888774
No 82
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=1e+02 Score=30.77 Aligned_cols=88 Identities=15% Similarity=0.272 Sum_probs=54.2
Q ss_pred eeeecCCCeEEEEEeecCCCCCcCCCCCCC-----C--CHHHHHHHHHHHHHcCCcEEEecccCCC---C--------CC
Q 047417 189 AKGGSPRARVASYKVCWYSEDDHNAAHGND-----C--TEQDTIEAFDDAIHDGVDIITVSLGYDK---I--------AD 250 (458)
Q Consensus 189 ~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~-----~--~~~~i~~ai~~a~~~g~~VIn~SlG~~~---~--------~~ 250 (458)
++-+||.+.|-+-..+|...+.+.-.+|.- | ..+.-+.-+++|+++|.+||+ |-|... + ..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 566899999887777766532111111100 0 012235567899999999996 555441 1 23
Q ss_pred CcccHHHHHHHH-HHh----CCcEEEEecCCC
Q 047417 251 FLSDGVVIGAFH-ATM----NGVLTVAAAGNG 277 (458)
Q Consensus 251 ~~~~~~~~a~~~-a~~----~Gi~vV~AAGN~ 277 (458)
...||+++.+.+ .++ .||.||+++=--
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ekp 247 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLEKP 247 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecCCC
Confidence 456899988877 333 478899996543
No 83
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=27.01 E-value=27 Score=36.26 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.1
Q ss_pred hhhhcc--CCCCCCcEEEEeccCCCCCCCCCCC
Q 047417 68 NSTWER--ARFGEDVIIGGIDSGIWPESESFSD 98 (458)
Q Consensus 68 ~~~~~~--~~~G~Gv~VaViDtGid~~Hp~f~~ 98 (458)
...|.+ .+.|+||+|||+|||||+.||.|+-
T Consensus 11 ~~f~~~~p~~dgr~v~iai~dtgvd~~~~~lq~ 43 (412)
T cd04857 11 LRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQV 43 (412)
T ss_pred HHHHHHCcCCCCCCcEEEEecCCCCCCCCcccc
Confidence 344443 7899999999999999999999973
No 84
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=24.94 E-value=32 Score=33.63 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=12.4
Q ss_pred cccCCCCCC---CCCCCC
Q 047417 443 SFSSRGPNR---IDPSII 457 (458)
Q Consensus 443 ~FSS~GP~~---~~p~il 457 (458)
.||||||.. +||||+
T Consensus 200 ~fs~~Gp~~~~~~KPDl~ 217 (291)
T cd04847 200 ATTSSGPGSPGPIKPDVV 217 (291)
T ss_pred CccccCCCCCCCcCCcEE
Confidence 399999985 789874
No 85
>PRK10949 protease 4; Provisional
Probab=24.90 E-value=2.2e+02 Score=31.31 Aligned_cols=63 Identities=17% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHc-CCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCC
Q 047417 218 DCTEQDTIEAFDDAIHD-GVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPE 280 (458)
Q Consensus 218 ~~~~~~i~~ai~~a~~~-g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~ 280 (458)
....+.+++.|+.|.++ .++-|=+-.-++.++....+.+..++.++.+.|..||++.|+....
T Consensus 346 ~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 346 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred CcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 45667899999999875 5665544444442223445677788888888899999999887644
No 86
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=24.81 E-value=1.8e+02 Score=28.27 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEecccCCCCCCCc-----ccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEE
Q 047417 219 CTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFL-----SDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLT 293 (458)
Q Consensus 219 ~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~-----~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vit 293 (458)
.+.+.++..-+.....|++++--.-=-+..++|. .+.+..--..+.+.|..||.=.=|--. ...-..+-.+|-
T Consensus 56 Es~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~~~~--~e~~~~y~Dilq 133 (286)
T COG2876 56 ESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMDVRD--VEAAAEYADILQ 133 (286)
T ss_pred CCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEecCHHH--HHHHHhhhhHHH
Confidence 3456666666666677888774322222222222 233433334466778888754333210 000112356788
Q ss_pred ecccc
Q 047417 294 VGAST 298 (458)
Q Consensus 294 VgA~~ 298 (458)
|||-+
T Consensus 134 vGARN 138 (286)
T COG2876 134 VGARN 138 (286)
T ss_pred hcccc
Confidence 88854
No 87
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=24.09 E-value=1.9e+02 Score=29.43 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=31.0
Q ss_pred HHHHHcCCc-EEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecC
Q 047417 229 DDAIHDGVD-IITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAG 275 (458)
Q Consensus 229 ~~a~~~g~~-VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 275 (458)
+.+++.|++ +|=.++|... ....+..++.++.++||.||.++=
T Consensus 256 ~~~~~~g~~GlVl~g~G~Gn----~p~~~~~al~~a~~~GipVV~~Sr 299 (349)
T TIGR00520 256 NAVLDAGAKGIVLAGVGNGS----LSAAGLKVNETAAKLGVPIVRSSR 299 (349)
T ss_pred HHHHhCCCCEEEEEeECCCC----CCHHHHHHHHHHHHCCCEEEEEcc
Confidence 445667877 5666888762 223577788899999999998854
No 88
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=23.42 E-value=2e+02 Score=28.81 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=31.2
Q ss_pred HHHHHHcCCc-EEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEec
Q 047417 228 FDDAIHDGVD-IITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAA 274 (458)
Q Consensus 228 i~~a~~~g~~-VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AA 274 (458)
|+.+++.|++ ||=..+|... ....+..++.++.++||.||+++
T Consensus 226 l~~~~~~g~~GiVl~~~G~Gn----~p~~~~~~l~~a~~~gi~VV~~S 269 (323)
T cd00411 226 VRAFLRAGYKGIVLAGYGAGN----VPTDLIDELEEAAERGVVVVNST 269 (323)
T ss_pred HHHHHhCCCCEEEEEeECCCC----CCHHHHHHHHHHHHCCCEEEEec
Confidence 3455677877 6666888762 22367778889999999999874
No 89
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=22.54 E-value=2.1e+02 Score=28.63 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=31.6
Q ss_pred HHHHHHcCCc-EEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecC
Q 047417 228 FDDAIHDGVD-IITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAG 275 (458)
Q Consensus 228 i~~a~~~g~~-VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 275 (458)
|+.+++.+++ +|=.++|... ....+..++.++.++||.||.+.=
T Consensus 228 l~~~~~~~~~GlVl~~~G~Gn----~p~~~~~~l~~a~~~gipVV~~sq 272 (323)
T smart00870 228 LDALLDSGAKGLVLEGTGAGN----VPPDLLEALKEALERGIPVVRTSR 272 (323)
T ss_pred HHHHHhCCCCEEEEEeeCCCC----CCHHHHHHHHHHHHCCCEEEEecc
Confidence 3445677776 6677888762 223577888899999999998753
No 90
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=21.87 E-value=47 Score=33.22 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=17.3
Q ss_pred cCCCccccccCCCCCC---CCCCCC
Q 047417 436 EPSPAVASFSSRGPNR---IDPSII 457 (458)
Q Consensus 436 ~~~~~~s~FSS~GP~~---~~p~il 457 (458)
...+.++.||||||+. ++|||.
T Consensus 229 ~~~~~~~~~S~~G~~~~~~~~pdi~ 253 (346)
T cd07475 229 PNGGQMSGFSSWGPTPDLDLKPDIT 253 (346)
T ss_pred CCCCccCCCcCCCCCcccCcCCeEE
Confidence 4577899999999985 567763
No 91
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=20.82 E-value=80 Score=35.18 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEe-----chhhHHHHhcCceEEEe
Q 047417 358 KKVQGRILVCLH-----EEKGYEAAKTGAVAMIT 386 (458)
Q Consensus 358 ~~~~gkivlv~r-----~~k~~~a~~aGA~gvii 386 (458)
-+++|||+|++- .+|++|+..+||.|||+
T Consensus 181 i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gvii 214 (702)
T KOG2195|consen 181 INLSGKIVLARVGKIYRGKKVKNAEAAGADGVII 214 (702)
T ss_pred ccccCceEEEEccccchhhhHhhHHHhhcCcEEE
Confidence 358999999986 78999999999999888
Done!