BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047420
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T039|EC14_ARATH Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana GN=EC1.4 PE=2
SV=1
Length = 127
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 36/49 (73%), Gaps = 6/49 (12%)
Query: 54 DCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYC------DASSAPSP 96
CC ++DIIT NCW AMLTSLGFT EE N++RG+C D+S APSP
Sbjct: 76 SCCESVDIITTNCWPAMLTSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124
>sp|Q9SJ23|EC13_ARATH Egg cell-secreted protein 1.3 OS=Arabidopsis thaliana GN=EC1.3 PE=2
SV=1
Length = 125
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Query: 55 CCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDA--SSAPSPS 97
CC+ +D+IT +CW AMLTSLGFT+EE N++RG+C + S SP+
Sbjct: 75 CCNAVDVITTDCWPAMLTSLGFTLEETNVLRGFCQSPNSGGSSPA 119
>sp|Q9SJ24|EC12_ARATH Egg cell-secreted protein 1.2 OS=Arabidopsis thaliana GN=EC1.2 PE=2
SV=1
Length = 125
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 54 DCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDA 90
DCC +++IT +CW AMLTSLGFT +E N++RG+C +
Sbjct: 74 DCCQAVEVITTDCWPAMLTSLGFTSDETNVLRGFCQS 110
>sp|Q9FGG1|EC15_ARATH Egg cell-secreted protein 1.5 OS=Arabidopsis thaliana GN=EC1.5 PE=2
SV=1
Length = 155
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Query: 48 GGLTNPDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYC-------DASSAPSPSGLA 100
GG+ + DCC I ++ ++CW M TSLG T EGN +R YC + S +P+P LA
Sbjct: 84 GGI-DKDCCGAIGLVVKDCWSVMFTSLGLTTMEGNNLREYCEFQAEKSELSPSPAPETLA 142
Query: 101 M 101
+
Sbjct: 143 L 143
>sp|Q9SRD8|EC11_ARATH Egg cell-secreted protein 1.1 OS=Arabidopsis thaliana GN=EC1.1 PE=2
SV=1
Length = 158
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 52 NPDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDA 90
P CC I I R CW M+ LGFT +EG++++GYCD
Sbjct: 83 GPGCCSAIRTIGRKCWPTMIGVLGFTAQEGDMLQGYCDG 121
>sp|B1J531|LEUD_PSEPW 3-isopropylmalate dehydratase small subunit OS=Pseudomonas putida
(strain W619) GN=leuD PE=3 SV=1
Length = 214
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 36 PDYDLATRLEASGGLTNPD--CCH-TIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDASS 92
P Y L L+A +T PD H ID ++C L L +G T+++G ++ +
Sbjct: 146 PGYQLTIDLQAQA-VTRPDGKVLHFEIDAFRKHCLLNGLDDIGLTLQDGEAIKAFEGKHR 204
Query: 93 APSP 96
A P
Sbjct: 205 AAQP 208
>sp|Q1ICV9|LEUD_PSEE4 3-isopropylmalate dehydratase small subunit OS=Pseudomonas
entomophila (strain L48) GN=leuD PE=3 SV=1
Length = 214
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 6 VFFILAFTCLIMTNIANATSKNDRLNN-NMKPDYDLATRLEASGGLTNPD---CCHTIDI 61
+FF +F ++ I +A ++ P Y L LEA +T PD ID
Sbjct: 115 IFFNNSFKNGLLPIILDAAEVDELFKQVEATPGYQLTIDLEAQA-VTRPDGKVLKFEIDA 173
Query: 62 ITRNCWLAMLTSLGFTVEEGNIVRGYCDASSAPSP 96
++C L L +G T+++ + ++ + A P
Sbjct: 174 FRKHCLLNGLDDIGLTLQDSDAIKAFEGKHRASQP 208
>sp|Q92LA1|LEUD_RHIME 3-isopropylmalate dehydratase small subunit OS=Rhizobium meliloti
(strain 1021) GN=leuD PE=3 SV=1
Length = 201
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 40 LATRLEASGGLTNPD---CCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDASSAPSP 96
L LEA +T PD +D R+C L L +G T+E+G + Y A++A P
Sbjct: 141 LTVDLEAQE-ITGPDGGSIKFEVDAFKRHCLLNGLDDIGLTLEKGGSIDNYEKATAASRP 199
>sp|Q91987|NTRK2_CHICK BDNF/NT-3 growth factors receptor OS=Gallus gallus GN=NTRK2 PE=1
SV=1
Length = 818
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 59 IDIITRNCWL--AMLTSLGFTVEEGNIVRGYCDASSAPSPS 97
+D+ NC L A L++ TV EG + YCD + P P+
Sbjct: 186 MDMKVPNCDLPSANLSNYNITVVEGKSITLYCDTTGGPPPN 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,575,975
Number of Sequences: 539616
Number of extensions: 1223353
Number of successful extensions: 2715
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2708
Number of HSP's gapped (non-prelim): 10
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)