Query 047420
Match_columns 105
No_of_seqs 41 out of 43
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 10:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05617 Prolamin_like: Prolam 99.1 3.7E-11 8E-16 76.4 2.9 41 49-89 26-70 (70)
2 PLN00213 predicted protein; Pr 99.1 1.1E-10 2.5E-15 85.5 5.5 84 1-90 1-108 (118)
3 PF07172 GRP: Glycine rich pro 97.0 0.00034 7.5E-09 48.8 1.7 28 1-29 1-28 (95)
4 PF09585 Lin0512_fam: Conserve 56.0 9.4 0.0002 27.9 2.1 32 48-79 15-47 (113)
5 PF03058 Sar8_2: Sar8.2 family 44.3 17 0.00038 26.1 1.9 31 1-32 1-32 (93)
6 PF11415 Toxin_37: Antifungal 41.6 11 0.00024 22.9 0.5 24 64-92 4-27 (35)
7 PF07064 RIC1: RIC1; InterPro 38.2 19 0.00041 28.7 1.4 20 59-79 164-183 (258)
8 cd07442 CRD_SFRP4 Cysteine-ric 33.5 28 0.0006 25.6 1.5 27 53-80 76-102 (127)
9 cd07888 CRD_corin_2 One of two 30.8 34 0.00073 24.7 1.6 33 53-90 74-106 (122)
10 cd07453 CRD_crescent Cysteine- 27.0 41 0.0009 24.9 1.5 27 53-80 72-98 (135)
11 cd07456 CRD_FZ5_like Cysteine- 26.9 44 0.00095 24.0 1.6 33 53-90 72-104 (120)
12 cd08804 Death_ank2 Death domai 26.2 48 0.001 22.1 1.6 25 60-85 12-36 (84)
13 cd04660 nsLTP_like nsLTP_like: 25.2 32 0.0007 21.9 0.6 16 51-66 24-39 (73)
14 cd07446 CRD_SFRP2 Cysteine-ric 24.5 52 0.0011 24.0 1.7 27 53-80 77-103 (128)
15 cd07441 CRD_SFRP3 Cysteine-ric 24.0 53 0.0011 24.1 1.6 27 53-80 75-101 (126)
16 cd07463 CRD_FZ9 Cysteine-rich 23.7 51 0.0011 24.0 1.5 33 53-90 75-107 (127)
17 cd07444 CRD_SFRP5 Cysteine-ric 23.1 58 0.0013 23.8 1.7 27 53-80 76-102 (127)
18 cd07454 CRD_LIN_17 Cysteine-ri 22.3 61 0.0013 23.5 1.6 27 53-80 75-101 (124)
19 cd07458 CRD_FZ1_like Cysteine- 22.2 60 0.0013 23.3 1.6 43 53-100 72-114 (119)
20 cd07457 CRD_FZ9_like Cysteine- 22.0 59 0.0013 23.3 1.5 35 53-92 73-107 (121)
21 cd07464 CRD_FZ2 Cysteine-rich 21.5 60 0.0013 23.7 1.5 41 54-99 75-115 (127)
22 KOG1017 Predicted uracil phosp 21.5 25 0.00054 29.2 -0.5 9 53-61 154-162 (267)
23 cd07465 CRD_FZ1 Cysteine-rich 21.4 61 0.0013 23.6 1.5 37 53-94 74-110 (127)
24 cd07466 CRD_FZ7 Cysteine-rich 21.2 63 0.0014 23.5 1.6 37 53-94 74-110 (125)
25 cd07443 CRD_SFRP1 Cysteine-ric 20.3 68 0.0015 23.4 1.6 27 53-80 76-102 (124)
26 PF14368 LTP_2: Probable lipid 20.3 34 0.00073 21.8 -0.0 44 47-90 38-89 (96)
27 cd07462 CRD_FZ10 Cysteine-rich 20.1 70 0.0015 23.4 1.6 27 53-80 75-101 (127)
No 1
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.12 E-value=3.7e-11 Score=76.36 Aligned_cols=41 Identities=22% Similarity=0.541 Sum_probs=37.5
Q ss_pred CccChhhhhHHHHhhhcchhHHhhhCCCCcchhh----hhhcccC
Q 047420 49 GLTNPDCCHTIDIITRNCWLAMLTSLGFTVEEGN----IVRGYCD 89 (105)
Q Consensus 49 gli~~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~----iLrGyCd 89 (105)
..++++||++|+.++++|||+|+..+++++++.. .|++||+
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 6899999999999999999998888888888887 9999996
No 2
>PLN00213 predicted protein; Provisional
Probab=99.11 E-value=1.1e-10 Score=85.51 Aligned_cols=84 Identities=23% Similarity=0.437 Sum_probs=57.1
Q ss_pred CchhHHHHHHHHHHHHHhhcccccccc--cccCCC-CC--CCc-chhhHh--------------h----hcCCccChhhh
Q 047420 1 MALKHVFFILAFTCLIMTNIANATSKN--DRLNNN-MK--PDY-DLATRL--------------E----ASGGLTNPDCC 56 (105)
Q Consensus 1 MA~~~~f~l~~lt~li~~~~~~~~~~r--~l~~~~-m~--~~~-~l~~RL--------------~----~~ggli~~~CC 56 (105)
|..|++|.||.+.+.+.+-|+- ...+ .+|.+. .+ ++. ++..=. | ...|.||++||
T Consensus 1 m~iknV~~ll~v~cIvvsVna~-lpqf~~~fp~~~p~~~~pg~pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCC 79 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSVNAQ-LPQFPAQLPFLFPFQLIPGLPDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACC 79 (118)
T ss_pred CchHHHHHHHHHHHHHheeccC-CCCCCCCCCCCCCccCCCCCccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHH
Confidence 8899999999999888775532 1222 222210 01 111 221110 0 11278899999
Q ss_pred hHHHHhhhcchhHHhhhCCCCcchhhhhhcccCC
Q 047420 57 HTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDA 90 (105)
Q Consensus 57 ~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~ 90 (105)
+|+...+ +|||+| +..+|.++ +||+.|.+
T Consensus 80 KAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~ 108 (118)
T PLN00213 80 KAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSR 108 (118)
T ss_pred HHHHhhh-ccccCC-cCCCccch---HHHHHHhc
Confidence 9999966 999995 99999998 99999998
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=97.01 E-value=0.00034 Score=48.81 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.3
Q ss_pred CchhHHHHHHHHHHHHHhhcccccccccc
Q 047420 1 MALKHVFFILAFTCLIMTNIANATSKNDR 29 (105)
Q Consensus 1 MA~~~~f~l~~lt~li~~~~~~~~~~r~l 29 (105)
||||+ ||||+|.|.+++++||.|++|++
T Consensus 1 MaSK~-~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhhhHHh
Confidence 89777 77777766666777889999999
No 4
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=56.04 E-value=9.4 Score=27.93 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCccChhhhhHHH-HhhhcchhHHhhhCCCCcc
Q 047420 48 GGLTNPDCCHTID-IITRNCWLAMLTSLGFTVE 79 (105)
Q Consensus 48 ggli~~~CC~AI~-~I~~~CWP~Ml~slGfT~e 79 (105)
|.-...++++|++ .|.|+|-|.|+..+|+..+
T Consensus 15 GqD~TkAA~RAv~DAI~~nslp~l~~~~~~~~~ 47 (113)
T PF09585_consen 15 GQDYTKAAVRAVRDAISHNSLPGLFEILGLDLD 47 (113)
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHcCCChH
Confidence 3445688888885 7999999999999999654
No 5
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=44.30 E-value=17 Score=26.12 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=20.0
Q ss_pred CchhH-HHHHHHHHHHHHhhcccccccccccCC
Q 047420 1 MALKH-VFFILAFTCLIMTNIANATSKNDRLNN 32 (105)
Q Consensus 1 MA~~~-~f~l~~lt~li~~~~~~~~~~r~l~~~ 32 (105)
|++|+ +|+.+.|++|++- +||-+.+|+...+
T Consensus 1 M~~Ktnlfl~lSLailLmI-ISSqv~AREms~A 32 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMI-ISSQVDAREMSKA 32 (93)
T ss_pred CcchhhhHHHHHHHHHHHH-HhhHHHHHHHhcc
Confidence 77664 5666666434322 4678899998655
No 6
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=41.60 E-value=11 Score=22.88 Aligned_cols=24 Identities=33% Similarity=0.825 Sum_probs=19.3
Q ss_pred hcchhHHhhhCCCCcchhhhhhcccCCCC
Q 047420 64 RNCWLAMLTSLGFTVEEGNIVRGYCDASS 92 (105)
Q Consensus 64 ~~CWP~Ml~slGfT~eE~~iLrGyCd~sp 92 (105)
+.||..--+..|.. +-|-|||+|.
T Consensus 4 ~~CWa~Cqaqhgiy-----FRRAyCdGs~ 27 (35)
T PF11415_consen 4 QSCWANCQAQHGIY-----FRRAYCDGSR 27 (35)
T ss_dssp HHHHHHHHHHS-TT-----EEEEEEETTE
T ss_pred HHHHHHHHHhhcch-----hhhhhccCCe
Confidence 57999999999988 6699999863
No 7
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=38.15 E-value=19 Score=28.74 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=18.4
Q ss_pred HHHhhhcchhHHhhhCCCCcc
Q 047420 59 IDIITRNCWLAMLTSLGFTVE 79 (105)
Q Consensus 59 I~~I~~~CWP~Ml~slGfT~e 79 (105)
.|.|+-..||.+|+.+| +|.
T Consensus 164 ~RKtE~~~W~~LF~~lg-~P~ 183 (258)
T PF07064_consen 164 ARKTEVRYWPYLFDYLG-SPR 183 (258)
T ss_pred HHhhHHHHHHHHHHhcC-CHH
Confidence 78999999999999999 876
No 8
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=33.49 E-value=28 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=18.3
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-+.|||.|- ..||+|.|
T Consensus 76 ~PCRslCe~vr~~C~~~m~-~fg~~WP~ 102 (127)
T cd07442 76 KPCRSVCQRARDGCEPIMR-RYNHSWPE 102 (127)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCC
Confidence 3443333445589999865 79999974
No 9
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=30.85 E-value=34 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=22.7
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCC
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDA 90 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~ 90 (105)
+-|-.-=..+-+.|||.|- ..||+|.|. | -|++
T Consensus 74 ~PCRslCe~vr~~C~~~m~-~fg~~WP~~--l--~C~~ 106 (122)
T cd07888 74 PPCRSLCRNSKERCESVLG-IVGLQWPED--T--DCAQ 106 (122)
T ss_pred CCcHHHHHHHHHHHHHHHH-HhCCCCCCc--C--cccc
Confidence 5564444555589999887 599999853 2 3666
No 10
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=26.98 E-value=41 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=19.0
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-+.|+|.| ..+||.|.|
T Consensus 72 ~PCRslCe~vr~~C~~~m-~~~g~~WP~ 98 (135)
T cd07453 72 YPCRSLCEAVRSSCAPLM-ACYGYPWPE 98 (135)
T ss_pred CccHHHHHHHHHHHHHHH-HHhCCCCCC
Confidence 345444455568999988 579999874
No 11
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=26.86 E-value=44 Score=23.98 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=22.2
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCC
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDA 90 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~ 90 (105)
+-|-.-=..+-++|||.|- ..||.|.|. | -||+
T Consensus 72 ~PCRslCe~vr~~C~~~m~-~~g~~WP~~--l--~C~~ 104 (120)
T cd07456 72 PPCRSVCERARDGCAPIMR-QYGFAWPER--M--SCDA 104 (120)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCCc--C--Chhh
Confidence 4554444555589999876 799998643 2 3666
No 12
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=26.16 E-value=48 Score=22.12 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHhhhcchhHHhhhCCCCcchhhhhh
Q 047420 60 DIITRNCWLAMLTSLGFTVEEGNIVR 85 (105)
Q Consensus 60 ~~I~~~CWP~Ml~slGfT~eE~~iLr 85 (105)
+.+|.+ |+.+...|||+..|-+-.+
T Consensus 12 ~~LG~d-Wk~LAr~Lg~se~dI~~i~ 36 (84)
T cd08804 12 DHLGFS-WTELARELDFTEEQIHQIR 36 (84)
T ss_pred HHHhhh-HHHHHHHcCCCHHHHHHHH
Confidence 456778 9999999999988766544
No 13
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=25.17 E-value=32 Score=21.94 Aligned_cols=16 Identities=19% Similarity=0.694 Sum_probs=12.2
Q ss_pred cChhhhhHHHHhhhcc
Q 047420 51 TNPDCCHTIDIITRNC 66 (105)
Q Consensus 51 i~~~CC~AI~~I~~~C 66 (105)
-..+||.+|+.....|
T Consensus 24 Ps~~CC~~vk~~~~~C 39 (73)
T cd04660 24 PSRECCAALRRADLPC 39 (73)
T ss_pred CCHHHHHHHHcCCcCC
Confidence 3468999999876555
No 14
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=24.54 E-value=52 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=17.7
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-+.|||.|- ..||.|.|
T Consensus 77 ~PCRslCe~vr~~C~~~m~-~~g~~WP~ 103 (128)
T cd07446 77 QPCRSLCEAVKDGCAPVMS-AFGFPWPD 103 (128)
T ss_pred CccHHHHHHHHHHHHHHHH-HcCCCCCC
Confidence 3443333345589999865 79999874
No 15
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=23.97 E-value=53 Score=24.06 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=18.8
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-+.|+|.|- ..||+|.|
T Consensus 75 ~PCRslCe~vr~~C~~~m~-~fg~~WP~ 101 (126)
T cd07441 75 KPCKSVCERARAGCEPVLI-RYRHTWPE 101 (126)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCC
Confidence 4454434455589999887 69999874
No 16
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=23.68 E-value=51 Score=24.04 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=21.4
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCC
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDA 90 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~ 90 (105)
+-|-.-=..+-++|+|.|- ..||.|.|. |+ |++
T Consensus 75 ~PCRslCe~vr~~C~~~m~-~fg~~WP~~--l~--C~~ 107 (127)
T cd07463 75 PACRPMCEQARQKCSPIME-QFNFGWPES--LD--CSR 107 (127)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCCc--CC--hhh
Confidence 3453333445589999876 799998643 32 666
No 17
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=23.09 E-value=58 Score=23.83 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=18.1
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-++|||.|- ..||.|.|
T Consensus 76 ~PCRslCe~vr~~C~~~m~-~~g~~WP~ 102 (127)
T cd07444 76 YPCRSLCEAVRDSCAPVME-SYGFPWPE 102 (127)
T ss_pred CCcHHHHHHHHHHHHHHHH-HcCCCCCC
Confidence 4443333444589999776 79999875
No 18
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=22.29 E-value=61 Score=23.49 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=17.9
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-++|+|.|- ..||+|.|
T Consensus 75 ~PCRslCe~vr~~C~~~m~-~fg~~WP~ 101 (124)
T cd07454 75 TSCKSVCEQVKADCFSILE-EFGIGWPE 101 (124)
T ss_pred CCChhHHHHHHHHHHHHHH-HhCCCCCC
Confidence 4453333344489999865 79999974
No 19
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=22.21 E-value=60 Score=23.29 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=25.8
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCCCCCCCccccc
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDASSAPSPSGLA 100 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~spa~sp~~~a 100 (105)
+-|-.-=..+-+.|+|.|- ..||.|.|. | -|++=|...+..+-
T Consensus 72 ~PCRslCe~vr~~C~~~m~-~~g~~WP~~--l--~C~~fP~~~~~~~C 114 (119)
T cd07458 72 PPCRSLCESARQGCEALMN-KFGFQWPES--L--DCEKFPVHGAGDLC 114 (119)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCCC--C--CcccCCCCCCCCcC
Confidence 4453333455589999665 799998843 3 27764444333333
No 20
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=22.01 E-value=59 Score=23.33 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=23.3
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCCCC
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDASS 92 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~sp 92 (105)
+-|-.-=..+-+.|||.| ...||+|.| .| -||+=|
T Consensus 73 ~PCRslCe~vr~~C~~~m-~~~g~~WP~--~l--~C~~fP 107 (121)
T cd07457 73 PACRSMCEQARDKCSPIM-EQFSFSWPD--SL--DCDRLP 107 (121)
T ss_pred CccHHHHHHHHHHHHHHH-HHhCCCCCC--cC--CcccCC
Confidence 445444455668999975 589999864 34 477744
No 21
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=21.54 E-value=60 Score=23.69 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=25.8
Q ss_pred hhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCCCCCCCcccc
Q 047420 54 DCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDASSAPSPSGL 99 (105)
Q Consensus 54 ~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~spa~sp~~~ 99 (105)
-|-.-=..+-+.|+|.|- ..||+|.|. |+ |++=|...+..+
T Consensus 75 PCRslCe~vr~~C~~~m~-~fg~~WP~~--l~--C~~fP~~~~~~~ 115 (127)
T cd07464 75 PCRSICERARQGCEALMN-KFGFQWPER--LR--CENFPRHGAEQI 115 (127)
T ss_pred CcHHHHHHHHHHHHHHHH-HhCCCCCCc--CC--cccCCCCCCCCc
Confidence 353333444589999865 799998854 54 888555544333
No 22
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=21.52 E-value=25 Score=29.18 Aligned_cols=9 Identities=56% Similarity=1.353 Sum_probs=8.2
Q ss_pred hhhhhHHHH
Q 047420 53 PDCCHTIDI 61 (105)
Q Consensus 53 ~~CC~AI~~ 61 (105)
.+||+.||+
T Consensus 154 RdCCRsIRI 162 (267)
T KOG1017|consen 154 RDCCRSIRI 162 (267)
T ss_pred HHHHHHhee
Confidence 899999996
No 23
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=21.36 E-value=61 Score=23.61 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=22.9
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCCCCCC
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDASSAP 94 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~spa~ 94 (105)
+-|-.-=..+-++|+|.| ..+||.|.|. | -||+=|..
T Consensus 74 ~PCRslCe~vr~~C~~~m-~~fg~~WP~~--l--~C~~fP~~ 110 (127)
T cd07465 74 PPCRSLCERARQGCEALM-NKFGFQWPDT--L--RCEKFPVH 110 (127)
T ss_pred CccHHHHHHHHHHHHHHH-HHhCCCCCCc--C--CcccCCCC
Confidence 445333344458999997 5799999743 3 26664443
No 24
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=21.16 E-value=63 Score=23.47 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=23.9
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcchhhhhhcccCCCCCC
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEEGNIVRGYCDASSAP 94 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE~~iLrGyCd~spa~ 94 (105)
+-|-.-=..+-+.|+|.|- ..||.|.|. |+ |++=|..
T Consensus 74 ~PCRslCe~vr~~C~~~m~-~fg~~WP~~--l~--C~~fP~~ 110 (125)
T cd07466 74 PPCRSLCERARQGCEALMN-KFGFQWPER--LR--CENFPVH 110 (125)
T ss_pred CCcHHHHHHHHHHHHHHHH-HhCCCCCCc--CC--cccCCCC
Confidence 4443333445589999865 799998853 44 8875543
No 25
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=20.32 E-value=68 Score=23.36 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=19.0
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-+.|||.|- ..||.|.|
T Consensus 76 ~PCRslCe~vr~~C~~~m~-~~g~~WP~ 102 (124)
T cd07443 76 YPCRWLCEAVRDSCEPVMQ-FFGFYWPE 102 (124)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhCCCCCC
Confidence 4454444555689999966 79999875
No 26
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=20.28 E-value=34 Score=21.76 Aligned_cols=44 Identities=20% Similarity=0.542 Sum_probs=22.7
Q ss_pred cCCccChhhhhHHHHh---hhcchhHHhhh-----CCCCcchhhhhhcccCC
Q 047420 47 SGGLTNPDCCHTIDII---TRNCWLAMLTS-----LGFTVEEGNIVRGYCDA 90 (105)
Q Consensus 47 ~ggli~~~CC~AI~~I---~~~CWP~Ml~s-----lGfT~eE~~iLrGyCd~ 90 (105)
.+....++||.+++.+ ..+|-=..+.+ .|+...-+-.|=.-|.-
T Consensus 38 ~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~ 89 (96)
T PF14368_consen 38 GGPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGV 89 (96)
T ss_dssp C-----HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTS
T ss_pred CCCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCC
Confidence 3456669999999997 77774433333 34554444445455544
No 27
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=20.09 E-value=70 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=17.9
Q ss_pred hhhhhHHHHhhhcchhHHhhhCCCCcch
Q 047420 53 PDCCHTIDIITRNCWLAMLTSLGFTVEE 80 (105)
Q Consensus 53 ~~CC~AI~~I~~~CWP~Ml~slGfT~eE 80 (105)
+-|-.-=..+-+.|+|.|- .+||.|.|
T Consensus 75 ~PCRslCe~vr~~C~~~m~-~~g~~WP~ 101 (127)
T cd07462 75 PACRVMCEQARLKCSPIME-QFNFKWPD 101 (127)
T ss_pred CccHHHHHHHHHHHHHHHH-HhCCCCCC
Confidence 3453333444589999865 79999874
Done!