Query 047420
Match_columns 105
No_of_seqs 41 out of 43
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 19:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idw_A Actin cytoskeleton-regu 39.0 13 0.00044 24.6 1.5 16 68-85 41-56 (72)
2 3c8l_A FTSZ-like protein of un 37.3 11 0.00036 27.0 0.9 30 49-78 20-50 (122)
3 1mm0_A Termicin; termite, cyte 34.3 12 0.0004 22.1 0.6 23 64-91 5-27 (36)
4 1g0y_I Antagonist peptide AF10 17.1 31 0.0011 18.8 0.2 9 75-83 3-11 (26)
5 2knp_A Mcocc-1; disulfide-rich 14.0 14 0.00047 21.2 -1.9 13 64-76 17-29 (33)
6 1l6h_A LTP2, non-specific lipi 13.9 81 0.0028 19.2 1.5 19 47-66 17-35 (69)
7 1n89_A Lipid transfer protein; 13.7 88 0.003 19.0 1.6 19 47-66 16-34 (67)
8 1pid_A Despentapeptide insulin 12.6 60 0.002 17.6 0.5 11 82-92 14-24 (26)
9 2alg_A Non-specific lipid tran 12.2 1.5E+02 0.0051 18.9 2.5 44 47-90 20-76 (92)
10 1afh_A Maize nonspecific lipid 11.7 1.2E+02 0.004 19.4 1.9 40 51-90 25-77 (93)
No 1
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=39.02 E-value=13 Score=24.56 Aligned_cols=16 Identities=56% Similarity=0.929 Sum_probs=13.6
Q ss_pred hHHhhhCCCCcchhhhhh
Q 047420 68 LAMLTSLGFTVEEGNIVR 85 (105)
Q Consensus 68 P~Ml~slGfT~eE~~iLr 85 (105)
|.++-.||++ ||||+|
T Consensus 41 ~~~Lr~LGi~--eGDIIr 56 (72)
T 3idw_A 41 NSMLRTLGLR--EGDIVR 56 (72)
T ss_dssp HHHHHHTTCC--HHHHHH
T ss_pred HHHHHHcCCc--hhhHHH
Confidence 3688899997 799987
No 2
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=37.31 E-value=11 Score=27.01 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=23.9
Q ss_pred CccChhhhhHHH-HhhhcchhHHhhhCCCCc
Q 047420 49 GLTNPDCCHTID-IITRNCWLAMLTSLGFTV 78 (105)
Q Consensus 49 gli~~~CC~AI~-~I~~~CWP~Ml~slGfT~ 78 (105)
.-...++++|+| .|.|+|.|.++..+|++.
T Consensus 20 qD~TkAA~RAvrDAI~~nslp~~~~~~g~~~ 50 (122)
T 3c8l_A 20 QEPTIAASRAVRNAIAHNALPGVWEVAGLSH 50 (122)
T ss_dssp SCHHHHHHHHHHHHHTTCCCSSHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHhhhcchhHHHHCCCCC
Confidence 344577788875 689999999999999953
No 3
>1mm0_A Termicin; termite, cytein-rich, antimicrobial peptide, insect defensin, CSAB motif, antimicrobial protein; NMR {Pseudacanthotermes spiniger} SCOP: g.3.7.4
Probab=34.31 E-value=12 Score=22.09 Aligned_cols=23 Identities=26% Similarity=0.732 Sum_probs=19.6
Q ss_pred hcchhHHhhhCCCCcchhhhhhcccCCC
Q 047420 64 RNCWLAMLTSLGFTVEEGNIVRGYCDAS 91 (105)
Q Consensus 64 ~~CWP~Ml~slGfT~eE~~iLrGyCd~s 91 (105)
+.||..=-...|.. +-|-|||+|
T Consensus 5 ~sCWa~Cqa~h~iy-----FRRAyCdgs 27 (36)
T 1mm0_A 5 QSCWATCQAQHSIY-----FRRAFCDRS 27 (36)
T ss_dssp HHHHHHHHHHSCTT-----EEEEEEETT
T ss_pred HHHHHHHHHhhCee-----eeeeeecCC
Confidence 57999988888888 669999985
No 4
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=17.13 E-value=31 Score=18.82 Aligned_cols=9 Identities=56% Similarity=0.590 Sum_probs=7.2
Q ss_pred CCCcchhhh
Q 047420 75 GFTVEEGNI 83 (105)
Q Consensus 75 GfT~eE~~i 83 (105)
+||+||.+-
T Consensus 3 pftweesna 11 (26)
T 1g0y_I 3 PFTWEESNA 11 (26)
T ss_dssp CCCHHHHHH
T ss_pred ccceecccc
Confidence 699998764
No 5
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=13.96 E-value=14 Score=21.23 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=9.1
Q ss_pred hcchhHHhhhCCC
Q 047420 64 RNCWLAMLTSLGF 76 (105)
Q Consensus 64 ~~CWP~Ml~slGf 76 (105)
-+|||..-+-+|.
T Consensus 17 crcwptvtpgvgi 29 (33)
T 2knp_A 17 CRCWPTVTPGVGI 29 (33)
T ss_dssp CCEEECSSTTEEE
T ss_pred eeeccccCCCeee
Confidence 3799987776553
No 6
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=13.92 E-value=81 Score=19.21 Aligned_cols=19 Identities=21% Similarity=0.761 Sum_probs=14.4
Q ss_pred cCCccChhhhhHHHHhhhcc
Q 047420 47 SGGLTNPDCCHTIDIITRNC 66 (105)
Q Consensus 47 ~ggli~~~CC~AI~~I~~~C 66 (105)
+|+...++||.+|+.. ..|
T Consensus 17 ~~~~Ps~~CC~~lk~~-~~C 35 (69)
T 1l6h_A 17 GGARPTAACCSSLRAQ-QGC 35 (69)
T ss_dssp TCCSTTHHHHHHHHHH-HHH
T ss_pred CCCCCCHHHHHhhCCC-CCC
Confidence 4556678999999975 556
No 7
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=13.68 E-value=88 Score=18.95 Aligned_cols=19 Identities=26% Similarity=0.782 Sum_probs=14.3
Q ss_pred cCCccChhhhhHHHHhhhcc
Q 047420 47 SGGLTNPDCCHTIDIITRNC 66 (105)
Q Consensus 47 ~ggli~~~CC~AI~~I~~~C 66 (105)
+|+...++||.+|+.. ..|
T Consensus 16 ~~~~Ps~~CC~~lk~~-~~C 34 (67)
T 1n89_A 16 SGAKPSGECCGNLRAQ-QGC 34 (67)
T ss_dssp TCCCCCHHHHHHHHHH-SSH
T ss_pred CCCCCCHHHHHhhCCC-CCC
Confidence 4556678999999975 555
No 8
>1pid_A Despentapeptide insulin; hormone, glucose metabolism; 1.30A {Bos taurus} SCOP: g.1.1.1 PDB: 1bph_A 1aph_A 1dph_A 1cph_A 2a3g_A 2bn1_A 2ins_A 2zp6_A 4e7t_A 4e7u_A 4e7v_A 2bn3_A 2qiu_A 2r34_A 2r35_A 2r36_A 1a7f_A 1ai0_A* 1aiy_A* 1b17_A ...
Probab=12.56 E-value=60 Score=17.63 Aligned_cols=11 Identities=18% Similarity=0.649 Sum_probs=6.4
Q ss_pred hhhhcccCCCC
Q 047420 82 NIVRGYCDASS 92 (105)
Q Consensus 82 ~iLrGyCd~sp 92 (105)
+.|+.||..++
T Consensus 14 ~~L~~YC~~~~ 24 (26)
T 1pid_A 14 YQLENYCNXXX 24 (26)
T ss_dssp HHHHTTCC---
T ss_pred HHHHHHhcccc
Confidence 47899997643
No 9
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=12.19 E-value=1.5e+02 Score=18.87 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=31.1
Q ss_pred cCCccChhhhhHHHHhh-------h---cc--hhHHhhhC-CCCcchhhhhhcccCC
Q 047420 47 SGGLTNPDCCHTIDIIT-------R---NC--WLAMLTSL-GFTVEEGNIVRGYCDA 90 (105)
Q Consensus 47 ~ggli~~~CC~AI~~I~-------~---~C--WP~Ml~sl-GfT~eE~~iLrGyCd~ 90 (105)
+|+...++||.+++.+. + .| ==....++ |+...-+.-|-+-|.-
T Consensus 20 ~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv 76 (92)
T 2alg_A 20 GGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGV 76 (92)
T ss_dssp HCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCC
Confidence 34556689999999975 3 35 33445566 7777778888888866
No 10
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=11.68 E-value=1.2e+02 Score=19.39 Aligned_cols=40 Identities=13% Similarity=0.446 Sum_probs=25.8
Q ss_pred cChhhhhHHHHhh----------hcchh--HHhhhC-CCCcchhhhhhcccCC
Q 047420 51 TNPDCCHTIDIIT----------RNCWL--AMLTSL-GFTVEEGNIVRGYCDA 90 (105)
Q Consensus 51 i~~~CC~AI~~I~----------~~CWP--~Ml~sl-GfT~eE~~iLrGyCd~ 90 (105)
-.++||.+|+.+. ..|.= ....++ |+...-+.-|-+-|.-
T Consensus 25 Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 25 PSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp CCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 4468999999995 24532 233444 5666666777777765
Done!