BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047422
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
 pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
 pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
 pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
          Length = 511

 Score = 27.3 bits (59), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 87  KLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVA 142
            + GL I+        N   GV++ FT  M HV+ E EW V  + ++ LL+L  +A
Sbjct: 250 SVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTV--RVISALLLLGVLA 303


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,215,179
Number of Sequences: 62578
Number of extensions: 133958
Number of successful extensions: 414
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)