BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047422
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64837|RTNLM_ARATH Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2
SV=1
Length = 206
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 102/148 (68%)
Query: 22 IARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLL 81
I D++LWRRK L+F+ LLVST+ W+LL Y F +T+ SW+ +++VS FL GS++RLL
Sbjct: 15 IVEDIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLL 74
Query: 82 GKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYV 141
K P+LSGLE+SE+ +E S R ++EE RWMF V E EWFVFA+ V G +LS +
Sbjct: 75 SKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRI 134
Query: 142 ATFSDLLTLLYTGIVMGMTVPVIYEKMG 169
D T L+ G+VMG+TVP ++E+ G
Sbjct: 135 GNLLDFHTCLFIGLVMGLTVPKLWEEYG 162
>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1
SV=1
Length = 253
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 86/147 (58%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G+ DVFLWR K LS ++L V+TAIWVL E+ +++FL++ + + ++ FL +
Sbjct: 66 GLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAF 125
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
+ K PPK+ + I E+ L + ++ R + + + +++ ++ F V GL ++S
Sbjct: 126 MNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISV 185
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
V + + LTL+Y V+ TVP++YEK
Sbjct: 186 VGNWFNFLTLVYICFVVLHTVPMLYEK 212
>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1
SV=1
Length = 255
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 85/147 (57%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G DVFLWR K LS +L V+TAIWVL E+ +++ L++ +++ + FL + L
Sbjct: 66 GKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTL 125
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
+ K P++ + + E++ L VA+S R + + + +++ ++ F V GL ++S
Sbjct: 126 INKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISV 185
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
V + + LTL+Y V+ TVP++YEK
Sbjct: 186 VGNWFNFLTLVYICFVILHTVPMLYEK 212
>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2
SV=1
Length = 226
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 80/147 (54%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G A D+ LWRR++LS ++++ST W++ E FL+V+S + + ++ +F+ +
Sbjct: 39 GKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAF 98
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
++ L L +SE+ A SFR + V+V ++ +F + V L +LS
Sbjct: 99 RNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSA 158
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
+ ++ L TLLY G ++ +T+P +Y K
Sbjct: 159 IGSYISLCTLLYIGTILSVTIPALYSK 185
>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1
SV=1
Length = 275
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 81/147 (55%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G D+F+W+ K +S +L +TA WV+ E+ +++ LT+ + + +++ FL +
Sbjct: 87 GKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMF 146
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
+ K PPK+ + I E+ L++A+ R + + ++ ++ F A+AGL VLS
Sbjct: 147 INKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSI 206
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
+ + LTL Y +V+ TVP+ Y+K
Sbjct: 207 LGGCFNFLTLAYIALVLLFTVPLAYDK 233
>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1
SV=1
Length = 257
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 76/147 (51%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G D+FLWR K +S +L TA WVL E+++++ L A+ ++ FL +
Sbjct: 66 GKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTF 125
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
+ K P + + I E L++ + R + + +++ K+ F +AGL VLS
Sbjct: 126 IHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSI 185
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
+ + + LTL YT V+ T+PV+YEK
Sbjct: 186 IGSCYNFLTLFYTATVLLFTIPVLYEK 212
>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1
SV=1
Length = 255
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 78/147 (53%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G D+FLWR K +S +L +T W+L E+ ++N LT+ +++ ++ FL S
Sbjct: 62 GKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTF 121
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
+ K P + + I E L++A+ R + + ++ ++ F +AGL VLS
Sbjct: 122 IHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSK 181
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
V + + LTL+Y V+ T+PV+YEK
Sbjct: 182 VGSSCNFLTLIYIATVLLFTIPVLYEK 208
>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1
SV=1
Length = 271
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G D+F+W+ K +S + +T WVL E+ +++ LT+ + + ++ FL +
Sbjct: 83 GKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMF 142
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
+ K PPK+ + I E+ L++A+ R + + ++ ++ F A+AGL VLS
Sbjct: 143 IHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSI 202
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
+ LTL Y +V+ TVP+ Y+K
Sbjct: 203 LGGCYSFLTLAYIALVLLFTVPLFYDK 229
>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2
SV=1
Length = 200
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G D+ LWR + + LL+ ST W L E +N L+ S + + +V+ FL +
Sbjct: 20 GSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATV 79
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
L + P + +EI E+ A + A+ R + +++ + Q L +SY
Sbjct: 80 LNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISY 139
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
V T + LTL+Y G+++ ++ P++YEK
Sbjct: 140 VGTLINSLTLVYIGVLLSLSFPIVYEK 166
>sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2
SV=1
Length = 203
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 78/147 (53%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
GI DV LWR+KN+S ++ V+ A W++ E + + T+ S + + ++S FL +
Sbjct: 22 GIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASI 81
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
L + P L +ISE A E + R V + + +++ ++ ++ + L +LS
Sbjct: 82 LNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSL 141
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
+ + D TL +T +++ MTVP YE+
Sbjct: 142 IGSLMDFQTLCHTSVLVVMTVPAFYER 168
>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2
SV=1
Length = 225
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 76/146 (52%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G D+ LWR ++ TL++ + +W L+EV ++NF+T+ +M+ + F F+ +
Sbjct: 37 GKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDF 96
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
L E P + + + E S ++A SF + + V+ ++ +F L ++S
Sbjct: 97 LNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSI 156
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYE 166
+ T+ + + LL+ G V T+PV+YE
Sbjct: 157 IGTYFNFVNLLFIGFVSMQTLPVMYE 182
>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1
SV=1
Length = 247
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G + DV LWR K +S ++L+ +TAIWVL E F+FL++ + + + F+ +
Sbjct: 59 GKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGF 118
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
L + ++ L + + EV + V ++ ++ + F AV GL V +
Sbjct: 119 LNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAM 178
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
V + + LT+LY G V T+PV+YE+
Sbjct: 179 VGSCCNFLTVLYIGFVGAHTMPVLYER 205
>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2
SV=1
Length = 201
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 10/162 (6%)
Query: 11 SSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEV--YQFNFLTVASWLAMSIV 68
S S G D+ +W+ + F LL +T +W L E Y F V + L ++
Sbjct: 2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61
Query: 69 SFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFR---GVVEEFTRWMFHVSVEKEW 125
F + +I L + P+L LEI+E+ VA++ R V R ++ K+
Sbjct: 62 LFLWAKSAI--LFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQL 119
Query: 126 FVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
F + L +S+V F + LT+LY G+V+ + +P +YE+
Sbjct: 120 F---RVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYER 158
>sp|A2RVT6|RTNLN_ARATH Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2
SV=2
Length = 215
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 25 DVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLT----VASWLAMSIVSFTFLSGSIMRL 80
D+ W+ K S T+L V T IW L EV ++ F+T + + ++++ S +L
Sbjct: 33 DIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSS--QL 90
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
+ +PP ++ L ISE + + N + F ++ +S K++ + AV L +LS
Sbjct: 91 IQSKPPSINDLRISESNWRFLFNK----INWFIIKLYDISSGKDFRLLFLAVVSLWILSV 146
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
V + LTLLY V T+P++YE+
Sbjct: 147 VGNYFSSLTLLYIVFVGLETIPMLYEQ 173
>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3
SV=2
Length = 244
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
G DV LWR K ++ LL T IW+L + F + + L + F LS
Sbjct: 68 GKPADVLLWRDKKVTLGLLSAVTVIWLL---FGFGGRRLLTSLCRGSILFLLLSFLWSNA 124
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
L K P + + I EK L+ A++ + + +++E++ F AV GL ++S
Sbjct: 125 LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSV 184
Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
+ + L+LLY V+ TVP++YEK
Sbjct: 185 IGNWFSFLSLLYICFVLIHTVPMLYEK 211
>sp|Q28D16|RTN3_XENTR Reticulon-3 OS=Xenopus tropicalis GN=rtn3 PE=2 SV=1
Length = 213
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 1 MDGTAGTEGSSSSSSCSDS-VGIA-RDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLT 58
M T+G + S SSS + G A +D+ WR ++ + ++ + +LL + F+ ++
Sbjct: 1 MADTSGPQSSHISSSAGEKGSGCAVQDLLYWR--DVKQSGMVFGGTMVLLLSLAAFSIIS 58
Query: 59 VASWLAMSIVSFTF---LSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRW 115
V S+L +S+++ T + S+++ + K + EK +++F+ + +
Sbjct: 59 VISYLVLSLLAVTISYRVYKSVLQAVQKTDEGHPFKPLLEKDIALSSDAFQ---KALSTS 115
Query: 116 MFHVSVEKEWFVFAQAVAGLL----------VLSYVATFSDLLTLLYTGIVMGMTVPVIY 165
+ HV+ ++ V V L+ +++YV + +TLL G+++ T P++Y
Sbjct: 116 LAHVNHALKYIVRLFLVEDLVDSLKLALLMWLMTYVGAVFNGITLLILGVLLAFTAPIVY 175
Query: 166 EKMGIK 171
EK ++
Sbjct: 176 EKYKVQ 181
>sp|Q5J6M8|RTN3A_XENLA Reticulon-3-A OS=Xenopus laevis GN=rtn3-a PE=2 SV=2
Length = 214
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 24 RDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTF---LSGSIMRL 80
RD+ WR ++ + ++ + +LL + F+ ++V S+L +S+++ T + S+++
Sbjct: 27 RDLLYWR--DVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLTVTISYRVYKSVLQA 84
Query: 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLL---- 136
+ K + EK ++SF+ + T + HV+ ++ V V L+
Sbjct: 85 VQKTDEGHPFKPLLEKDITLSSDSFQ---KALTASLAHVNHALKYIVRLFLVDDLVDSLK 141
Query: 137 ------VLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK 171
+++YV + +TLL G+++ T P++YEK ++
Sbjct: 142 LALLMWLMTYVGAVFNGITLLILGVLLTFTAPIVYEKYKVQ 182
>sp|Q9ZU43|RTNLO_ARATH Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2
SV=2
Length = 191
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 27/157 (17%)
Query: 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVAS------------WLAMSIV 68
G D+ LW+ K S L+++T W LLE + + + W V
Sbjct: 11 GAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEV 70
Query: 69 SFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVF 128
FT + PP L S L+ S ++E ++ ++ K+ F
Sbjct: 71 FFT-----------RRPPTPEELN-QPDSPLKALFS---MMEGHLLMLYEIAYGKDNKTF 115
Query: 129 AQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIY 165
+ + + ++ + ++ LLT+LY +V MT+PV+Y
Sbjct: 116 LKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVY 152
>sp|Q54TH4|GET4_DICDI Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum
GN=DDB_G0281815 PE=3 SV=1
Length = 309
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 102 ANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTV 161
N + E W V E++ +A+ GLL L + SDL L T ++ G
Sbjct: 149 GNDYFSFCEMLKNWTEDVDEEEKDLYITRAIFGLLCLKKLKQASDLYNLFTTKVIKGDPS 208
Query: 162 PVI 164
P++
Sbjct: 209 PLL 211
>sp|Q68EW1|RTN3B_XENLA Reticulon-3-B OS=Xenopus laevis GN=rtn3-b PE=2 SV=1
Length = 214
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 87/177 (49%), Gaps = 21/177 (11%)
Query: 5 AGTEGSSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLA 64
AG +GS C+ RD+ WR ++ + ++ + +LL + F+ ++V S+L
Sbjct: 17 AGDKGSG----CA-----VRDLLYWR--DVKQSGMVFGGTMVLLLSLAAFSIISVISYLV 65
Query: 65 MSIVSFTF---LSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHV-- 119
+S++S T + S+++ + K + EK ++SF+ + + H
Sbjct: 66 LSLLSVTISFRVYKSVLQAVQKTEEGHPFKPLLEKDIALSSDSFQKGLSSSLAHVNHALK 125
Query: 120 SVEK----EWFVFAQAVAGLL-VLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK 171
S+ + E V + +A L+ +++Y+ + +TLL G+++ T P++YEK ++
Sbjct: 126 SIVRLFLVEDLVDSLKLALLMWLMTYIGAVFNGITLLILGVLLAFTTPLVYEKYKVQ 182
>sp|B2GUY1|PLK4_RAT Serine/threonine-protein kinase PLK4 OS=Rattus norvegicus GN=Plk4
PE=2 SV=1
Length = 924
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 4 TAGTEGSSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFN---FLTVA 60
TA T G+S SSS S + + VF+ KN+ + L S A+WV QFN L V
Sbjct: 823 TAATTGTSISSSLPKSAQLLKSVFV---KNVGWATQLTSGAVWV-----QFNDGSQLVVQ 874
Query: 61 SWLAMSIVSFTFLSGSIMR 79
+ +S +S+T G R
Sbjct: 875 A--GVSSISYTSPDGQTTR 891
>sp|Q6RJR6|RTN3_RAT Reticulon-3 OS=Rattus norvegicus GN=Rtn3 PE=1 SV=1
Length = 940
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 25 DVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTF---LSGSIMRLL 81
D+ WR ++ T + T + +LL + F+ ++V S+L ++++S T + S+++ +
Sbjct: 754 DLIFWR--DVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 811
Query: 82 GKEP---PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLL-- 136
K P + L++ + E +S+ M HV+ + + V L+
Sbjct: 812 QKSEEGHPFKAYLDVDITLSSEAFHSYMNAA------MVHVNKALKLIIRLFLVEDLVDS 865
Query: 137 --------VLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
+++YV + +TLL ++ +VP++YEK
Sbjct: 866 LKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEK 904
>sp|Q9ES97|RTN3_MOUSE Reticulon-3 OS=Mus musculus GN=Rtn3 PE=1 SV=2
Length = 964
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 25 DVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTF---LSGSIMRLL 81
D+ WR ++ T + T + +LL + F+ ++V S+L ++++S T + S+++ +
Sbjct: 778 DLIFWR--DVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 835
Query: 82 GKEP---PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLL-- 136
K P + L++ + E +++ M HV+ + + V L+
Sbjct: 836 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAA------MVHVNKALKLIIRLFLVEDLVDS 889
Query: 137 --------VLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
+++YV + +TLL ++ +VP++YEK
Sbjct: 890 LKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEK 928
>sp|O95197|RTN3_HUMAN Reticulon-3 OS=Homo sapiens GN=RTN3 PE=1 SV=2
Length = 1032
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 25 DVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTF---LSGSIMRLL 81
D+ WR ++ T + T + +LL + F+ ++V S+L ++++S T + S+++ +
Sbjct: 846 DLIFWR--DVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 903
Query: 82 GKEP---PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLL-- 136
K P + L++ + E +++ M H++ + + V L+
Sbjct: 904 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAA------MVHINRALKLIIRLFLVEDLVDS 957
Query: 137 --------VLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
+++YV + +TLL ++ +VP++YEK
Sbjct: 958 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEK 996
>sp|Q5RBL9|RTN3_PONAB Reticulon-3 OS=Pongo abelii GN=RTN3 PE=2 SV=1
Length = 236
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 13 SSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTF 72
+ SCS S + D+ WR ++ T + T + +LL + F+ ++V S+L ++++S T
Sbjct: 39 TKSCSSSCAV-HDLIFWR--DVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTI 95
Query: 73 ---LSGSIMRLLGKEP---PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWF 126
+ S+++ + K P + L++ + E +++ M H++ +
Sbjct: 96 SFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAA------MVHINRALKLI 149
Query: 127 VFAQAVAGLL----------VLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
+ V L+ +++YV + +TLL ++ +VP++YEK
Sbjct: 150 IRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEK 200
>sp|P17209|MYL4_RAT Myosin light chain 4 OS=Rattus norvegicus GN=Myl4 PE=2 SV=2
Length = 193
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 75 GSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAG 134
G ++R LG+ P L + K E NS E F + H+S KE + V G
Sbjct: 75 GDVLRALGQNPTNAEVLRVLGKPKPEEMNSKTLDFEMFLPILQHISRNKEQGTYEDFVEG 134
Query: 135 LLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK 171
L V + G VMG + + +G K
Sbjct: 135 LRVFDKES----------NGTVMGAELRHVLATLGEK 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,678,178
Number of Sequences: 539616
Number of extensions: 1928377
Number of successful extensions: 5786
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5751
Number of HSP's gapped (non-prelim): 47
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)