Query 047422
Match_columns 171
No_of_seqs 107 out of 403
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 10:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 5.6E-41 1.2E-45 275.8 15.9 153 19-171 39-195 (230)
2 PF02453 Reticulon: Reticulon; 100.0 8.7E-36 1.9E-40 231.4 -8.9 149 23-171 1-155 (169)
3 PF04842 DUF639: Plant protein 96.7 0.043 9.3E-07 51.8 13.2 135 21-162 504-649 (683)
4 PF06398 Pex24p: Integral pero 93.3 1.5 3.3E-05 38.0 11.3 21 21-41 30-50 (359)
5 PF08372 PRT_C: Plant phosphor 89.7 3 6.6E-05 32.7 8.4 60 106-165 75-134 (156)
6 PF08372 PRT_C: Plant phosphor 84.2 0.84 1.8E-05 35.8 2.4 26 19-44 81-106 (156)
7 KOG1792 Reticulon [Intracellul 82.5 1.6 3.4E-05 36.4 3.5 55 115-169 42-96 (230)
8 PF02453 Reticulon: Reticulon; 68.7 1.4 3.1E-05 33.5 -0.3 25 21-45 98-122 (169)
9 PHA03049 IMV membrane protein; 56.8 49 0.0011 22.4 5.4 27 97-123 41-68 (68)
10 KOG3488 Dolichol phosphate-man 55.5 32 0.00069 23.7 4.5 34 116-149 39-72 (81)
11 COG1458 Predicted DNA-binding 53.9 22 0.00047 29.2 4.0 35 84-118 83-117 (221)
12 COG5038 Ca2+-dependent lipid-b 52.6 20 0.00043 36.4 4.3 78 35-118 158-235 (1227)
13 PF14940 TMEM219: Transmembran 43.6 23 0.00051 29.3 2.8 46 60-121 13-58 (223)
14 PF07234 DUF1426: Protein of u 43.4 38 0.00082 24.8 3.5 26 140-165 17-42 (117)
15 COG0053 MMT1 Predicted Co/Zn/C 37.6 2.6E+02 0.0057 23.9 11.7 109 55-164 82-199 (304)
16 TIGR03875 RNA_lig_partner RNA 37.2 36 0.00078 27.9 2.9 33 84-116 79-111 (206)
17 PF06055 ExoD: Exopolysacchari 34.5 2.4E+02 0.0051 22.5 8.7 38 80-117 70-111 (187)
18 PRK04358 hypothetical protein; 33.9 45 0.00097 27.6 3.0 33 84-116 83-115 (217)
19 PTZ00443 Thioredoxin domain-co 33.0 2.2E+02 0.0047 23.4 7.0 9 162-170 215-224 (224)
20 PF05961 Chordopox_A13L: Chord 31.7 1.6E+02 0.0035 19.9 4.9 12 111-122 56-67 (68)
21 cd06854 GT_WbpL_WbcO_like The 30.5 3.1E+02 0.0067 22.6 7.8 18 73-90 218-235 (253)
22 PRK06433 NADH dehydrogenase su 27.0 1.7E+02 0.0038 20.5 4.7 48 26-73 22-73 (88)
23 PF04842 DUF639: Plant protein 24.7 2.8E+02 0.0061 26.9 6.9 55 111-169 501-555 (683)
24 KOG2735 Phosphatidylserine syn 23.8 3.7E+02 0.008 24.6 7.1 24 27-50 58-81 (466)
25 PRK00753 psbL photosystem II r 22.4 1.2E+02 0.0025 18.3 2.6 21 148-168 16-36 (39)
26 KOG1889 Putative phosphoinosit 22.1 2.8E+02 0.006 26.3 6.2 63 29-91 515-577 (579)
27 PRK11234 nfrB bacteriophage N4 21.6 4.3E+02 0.0093 25.7 7.7 10 141-150 437-446 (727)
28 PF11444 DUF2895: Protein of u 21.6 1.6E+02 0.0035 24.1 4.1 42 70-111 28-76 (199)
29 PF12725 DUF3810: Protein of u 21.4 5.3E+02 0.012 22.2 9.7 58 56-118 57-120 (318)
30 PRK04897 heat shock protein Ht 21.3 5.1E+02 0.011 21.9 8.2 22 28-49 6-27 (298)
31 CHL00038 psbL photosystem II p 20.6 1.5E+02 0.0033 17.7 2.8 21 148-168 15-35 (38)
32 PF07954 DUF1689: Protein of u 20.3 1.4E+02 0.0029 23.4 3.4 20 151-170 37-56 (152)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-41 Score=275.81 Aligned_cols=153 Identities=33% Similarity=0.550 Sum_probs=148.2
Q ss_pred CCCccceeeecccCchhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC--CCC-ceeeC
Q 047422 19 SVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGK-EPP--KLS-GLEIS 94 (171)
Q Consensus 19 ~~~~vaDlllWrd~~~S~~vf~~~t~~~~L~~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~-~~p--~~~-~~~is 94 (171)
+||+++|+++|||+|+|+.+|++++++|++|+..+|+.+|++|+++++.+.+.|.|.+...+++| +.| ..| ++++|
T Consensus 39 g~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ip 118 (230)
T KOG1792|consen 39 GGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIP 118 (230)
T ss_pred CCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecC
Confidence 78999999999999999999999999999999999999999999999999999999999888888 666 456 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCC
Q 047422 95 EKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK 171 (171)
Q Consensus 95 ee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lYe~~q~~ 171 (171)
||.++++++.++.++|+.++++|+++.++|++.|+|+++.||++|++|+|||++|++|+|++++||+|++|||||||
T Consensus 119 ee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ 195 (230)
T KOG1792|consen 119 EEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQ 195 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=99.98 E-value=8.7e-36 Score=231.44 Aligned_cols=149 Identities=24% Similarity=0.479 Sum_probs=48.2
Q ss_pred cceeeecccCchhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCCceeeCHH
Q 047422 23 ARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEP------PKLSGLEISEK 96 (171)
Q Consensus 23 vaDlllWrd~~~S~~vf~~~t~~~~L~~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~------p~~~~~~isee 96 (171)
|+|+++||||++||.+|++++++|++++++++|++|++|+++++.+.+.++++...+.+++.+ |..++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999999999888777777754 33567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCC
Q 047422 97 SALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK 171 (171)
Q Consensus 97 ~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lYe~~q~~ 171 (171)
.+++.++.+.+.+|+.++.+|++..++|+..++|+++++|+++++|+++|++||+|++++++||+|++||+||+|
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~ 155 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEE 155 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=96.70 E-value=0.043 Score=51.81 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=88.1
Q ss_pred CccceeeecccCchhHHHHHHHHHHHHHH-HhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCCce
Q 047422 21 GIARDVFLWRRKNLSFTLLLVSTAIWVLL-EVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGK--------EPPKLSGL 91 (171)
Q Consensus 21 ~~vaDlllWrd~~~S~~vf~~~t~~~~L~-~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~--------~~p~~~~~ 91 (171)
..+.++..|+||.+|...++.... ..+ .+.+|-+ -..++.+++..+|...-+-.+| .+|+...+
T Consensus 504 ~~~~~l~~We~P~kt~~Fl~~~~~--iI~r~wl~Y~~-----p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTv 576 (683)
T PF04842_consen 504 KWLQKLASWEEPLKTLVFLALFLY--IIYRGWLGYIF-----PAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTV 576 (683)
T ss_pred HHHHHHhhccCcchhHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHH
Confidence 345578999999999998854432 222 2222322 2223333333455332211222 23332211
Q ss_pred --eeCHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 047422 92 --EISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVP 162 (171)
Q Consensus 92 --~isee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP 162 (171)
.+.-..+..-++......|-++-++|.|...+.+.-+-+|++.|..++.+-..+-+--++...++-.||-.
T Consensus 577 EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre 649 (683)
T PF04842_consen 577 EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE 649 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12223334445666778899999999999999999999999999999999999999999998888888853
No 4
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=93.33 E-value=1.5 Score=38.01 Aligned_cols=21 Identities=14% Similarity=0.505 Sum_probs=16.7
Q ss_pred CccceeeecccCchhHHHHHH
Q 047422 21 GIARDVFLWRRKNLSFTLLLV 41 (171)
Q Consensus 21 ~~vaDlllWrd~~~S~~vf~~ 41 (171)
..+.+++.|+|+..+-.++..
T Consensus 30 d~vl~il~W~~p~~t~~~L~l 50 (359)
T PF06398_consen 30 DRVLRILTWTNPDYTLSFLLL 50 (359)
T ss_pred HHHHHeEEeCCCCcchHHHHH
Confidence 457789999999988777743
No 5
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=89.74 E-value=3 Score=32.71 Aligned_cols=60 Identities=17% Similarity=-0.007 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 047422 106 RGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIY 165 (171)
Q Consensus 106 ~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lY 165 (171)
...+....++++.++.++|+..+..+++++++.+++--+.-+..++.+..+-.++=|++-
T Consensus 75 lgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R 134 (156)
T PF08372_consen 75 LGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFR 134 (156)
T ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcccc
Confidence 333445578899999999999999999998888888777777777777777777776653
No 6
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=84.16 E-value=0.84 Score=35.82 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCCccceeeecccCchhHHHHHHHHH
Q 047422 19 SVGIARDVFLWRRKNLSFTLLLVSTA 44 (171)
Q Consensus 19 ~~~~vaDlllWrd~~~S~~vf~~~t~ 44 (171)
.|+++..++.||||..|+....+..+
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv 106 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLV 106 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHH
Confidence 68899999999999999988865433
No 7
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.48 E-value=1.6 Score=36.38 Aligned_cols=55 Identities=4% Similarity=-0.044 Sum_probs=51.1
Q ss_pred HHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 047422 115 WMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMG 169 (171)
Q Consensus 115 ~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lYe~~q 169 (171)
+..|+..|||.++++.+.++..++-.+-..++..++...+.+.++++++.|.+++
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~ 96 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSK 96 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999886
No 8
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=68.70 E-value=1.4 Score=33.51 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=12.7
Q ss_pred CccceeeecccCchhHHHHHHHHHH
Q 047422 21 GIARDVFLWRRKNLSFTLLLVSTAI 45 (171)
Q Consensus 21 ~~vaDlllWrd~~~S~~vf~~~t~~ 45 (171)
....+++.|||++.|..++.+..++
T Consensus 98 ~~~~~l~~~~~~~~~l~~~~~l~~l 122 (169)
T PF02453_consen 98 SWLRRLVFGEDPKKSLKVFVVLYIL 122 (169)
T ss_dssp HHHHCCCHCT-TTGGG---------
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHH
Confidence 4456899999999999988654433
No 9
>PHA03049 IMV membrane protein; Provisional
Probab=56.80 E-value=49 Score=22.37 Aligned_cols=27 Identities=4% Similarity=0.133 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhcccc
Q 047422 97 SALEVANSFRGVVE-EFTRWMFHVSVEK 123 (171)
Q Consensus 97 ~~~~~a~~~~~~~n-~~l~~l~~l~~~~ 123 (171)
..++.-...+++++ .-++.++++++++
T Consensus 41 ~~e~~kT~yvD~L~~~hl~SfyklFs~~ 68 (68)
T PHA03049 41 KMEDLKTGYVDKLKSSHLNSFYKLFSSK 68 (68)
T ss_pred CchhhhhhHHhhcCHHHHHHHHHHhcCC
Confidence 34443334444444 3466777776653
No 10
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=55.54 E-value=32 Score=23.67 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=28.0
Q ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047422 116 MFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLT 149 (171)
Q Consensus 116 l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lT 149 (171)
.+..+.-+|+....-++++++.+..+|.+.|...
T Consensus 39 ihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 39 IHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4456677899999999999999999998877654
No 11
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=53.87 E-value=22 Score=29.24 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhh
Q 047422 84 EPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFH 118 (171)
Q Consensus 84 ~~p~~~~~~isee~~~~~a~~~~~~~n~~l~~l~~ 118 (171)
.+|+..++.||-+.+.+++..++.++|+.++...+
T Consensus 83 KtPnryevkiPa~ifyeyV~diR~RinkGlRvAE~ 117 (221)
T COG1458 83 KTPNRYEVKIPAAIFYEYVEDIRERINKGLRVAEE 117 (221)
T ss_pred cCCCceeecCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 46667899999999999999999999998765543
No 12
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=52.60 E-value=20 Score=36.41 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHH
Q 047422 35 SFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTR 114 (171)
Q Consensus 35 S~~vf~~~t~~~~L~~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~p~~~~~~isee~~~~~a~~~~~~~n~~l~ 114 (171)
++++|++..+.| +|-..++++.+++ ++.+...++|+.-..-++|+-.-...=+.++|..++-.++ ..++|.+|+
T Consensus 158 ~~i~l~~~v~Sw-ifg~~~fs~~slf----fii~~~~~vY~~~~~rv~rnird~v~~~~~~ek~~nd~ES-veWLNtfL~ 231 (1227)
T COG5038 158 VAIVLIGSVASW-IFGYLGFSFASLF----FIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLENDYES-VEWLNTFLQ 231 (1227)
T ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHHHH
Confidence 456666555554 4444444444332 3344556688876666665433222223456666666655 677888887
Q ss_pred HHhh
Q 047422 115 WMFH 118 (171)
Q Consensus 115 ~l~~ 118 (171)
++=-
T Consensus 232 KfW~ 235 (1227)
T COG5038 232 KFWP 235 (1227)
T ss_pred hhee
Confidence 6643
No 13
>PF14940 TMEM219: Transmembrane 219
Probab=43.63 E-value=23 Score=29.34 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047422 60 ASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSV 121 (171)
Q Consensus 60 vs~~~l~~l~~~fl~~~~~~~~~~~~p~~~~~~isee~~~~~a~~~~~~~n~~l~~l~~l~~ 121 (171)
+..++++++.+.|+ .+..++++...+.||+ ...||.++.++-++-.
T Consensus 13 vF~l~Ll~~aI~~l--~Lg~yi~~~~l~nPDi--------------~~DWN~fL~~ls~l~f 58 (223)
T PF14940_consen 13 VFTLCLLLLAISFL--CLGYYIKRNELKNPDI--------------PQDWNTFLLSLSQLDF 58 (223)
T ss_pred HHHHHHHHHHHHHh--eeeeEecccCCCcccc--------------hhhHHHHHHhhcCeeE
Confidence 33445555556654 3345667777777886 5688998888877643
No 14
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=43.41 E-value=38 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 047422 140 YVATFSDLLTLLYTGIVMGMTVPVIY 165 (171)
Q Consensus 140 ~vGs~fs~lTLl~i~~v~~fTvP~lY 165 (171)
++|..|--.|++||-+.++|-+|+--
T Consensus 17 F~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 17 FFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35788889999999999999999843
No 15
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=37.58 E-value=2.6e+02 Score=23.88 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCce--------eeCHHHHHHHHHHHHHHHHHHHHHHhhhccccchH
Q 047422 55 NFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGL--------EISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWF 126 (171)
Q Consensus 55 s~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~p~~~~~--------~isee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~ 126 (171)
++.+++.-+.++...+..+|..+.++++..++..+.. .+..+...++...+..+.|.-.-.....-.--|..
T Consensus 82 ~l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ 161 (304)
T COG0053 82 TLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVL 161 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 3456666666666666667888878887444433222 12234444444444444442211111111222777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHH
Q 047422 127 VFAQAVAGLLVLSYVA-TFSDLLTLLYTGIVMGMTVPVI 164 (171)
Q Consensus 127 ~flkv~~~L~ils~vG-s~fs~lTLl~i~~v~~fTvP~l 164 (171)
.++-+.+.+- ..+.| .|.+...-+.+++....+.-.+
T Consensus 162 ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~ 199 (304)
T COG0053 162 TSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRL 199 (304)
T ss_pred HHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666 66777 6677777777777766665443
No 16
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=37.23 E-value=36 Score=27.94 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=28.8
Q ss_pred CCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHH
Q 047422 84 EPPKLSGLEISEKSALEVANSFRGVVEEFTRWM 116 (171)
Q Consensus 84 ~~p~~~~~~isee~~~~~a~~~~~~~n~~l~~l 116 (171)
.+|...++.||-+.+.++.+-++.++|+.++..
T Consensus 79 KsP~rye~~IPA~i~ye~I~e~R~RInkGLRVA 111 (206)
T TIGR03875 79 KSPNRYEVKIPAEIFYEYIEEVRERIDKGLRVA 111 (206)
T ss_pred cCCCeeeeeccHHHHHHHHHHHHHHHhcchhHH
Confidence 466678999999999999999999999887654
No 17
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=34.53 E-value=2.4e+02 Score=22.49 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=27.8
Q ss_pred HhCCCCCCCC----ceeeCHHHHHHHHHHHHHHHHHHHHHHh
Q 047422 80 LLGKEPPKLS----GLEISEKSALEVANSFRGVVEEFTRWMF 117 (171)
Q Consensus 80 ~~~~~~p~~~----~~~isee~~~~~a~~~~~~~n~~l~~l~ 117 (171)
.++|++|-.| +-++|.+..++..+.+.+..+..-+..|
T Consensus 70 ~~Gr~~~WLP~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~r 111 (187)
T PF06055_consen 70 LLGRRHPWLPKFLRRRSISREKLRKAVRRLRPWLRRLERLLR 111 (187)
T ss_pred HcCCCCCCCChHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4788877654 5579999999888888777776655543
No 18
>PRK04358 hypothetical protein; Provisional
Probab=33.88 E-value=45 Score=27.62 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHH
Q 047422 84 EPPKLSGLEISEKSALEVANSFRGVVEEFTRWM 116 (171)
Q Consensus 84 ~~p~~~~~~isee~~~~~a~~~~~~~n~~l~~l 116 (171)
.+|...++.||-+.+.++.+-++.++|+.++..
T Consensus 83 KsP~ry~v~IPA~i~ye~I~~mR~RInkGLRVA 115 (217)
T PRK04358 83 KSPNRYEIKIPAEIFYEYIEDMRERINKGLRVA 115 (217)
T ss_pred cCCCceeeeccHHHHHHHHHHHHHHHhcchHHH
Confidence 456678999999999999999999999887654
No 19
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=33.00 E-value=2.2e+02 Score=23.38 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=6.6
Q ss_pred HHH-HhhhcC
Q 047422 162 PVI-YEKMGI 170 (171)
Q Consensus 162 P~l-Ye~~q~ 170 (171)
|++ |+|.||
T Consensus 215 ~~~~~~~~~~ 224 (224)
T PTZ00443 215 PKVLNARKKD 224 (224)
T ss_pred CcccccccCC
Confidence 875 887775
No 20
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=31.70 E-value=1.6e+02 Score=19.93 Aligned_cols=12 Identities=0% Similarity=0.094 Sum_probs=7.3
Q ss_pred HHHHHHhhhccc
Q 047422 111 EFTRWMFHVSVE 122 (171)
Q Consensus 111 ~~l~~l~~l~~~ 122 (171)
.-++.+++++.+
T Consensus 56 ~Hl~SfYkLFs~ 67 (68)
T PF05961_consen 56 DHLSSFYKLFSS 67 (68)
T ss_pred HHHHHHHHHhcc
Confidence 346667766655
No 21
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=30.49 E-value=3.1e+02 Score=22.60 Aligned_cols=18 Identities=22% Similarity=0.023 Sum_probs=12.6
Q ss_pred HHHHHHHHhCCCCCCCCc
Q 047422 73 LSGSIMRLLGKEPPKLSG 90 (171)
Q Consensus 73 l~~~~~~~~~~~~p~~~~ 90 (171)
+...+.++.++++|++||
T Consensus 218 ~~~i~~R~~~g~~~~~~d 235 (253)
T cd06854 218 TVTLLRRLLRGENIFQAH 235 (253)
T ss_pred HHHHHHHHHcCCCCCCCc
Confidence 334444678888998887
No 22
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=27.02 E-value=1.7e+02 Score=20.49 Aligned_cols=48 Identities=25% Similarity=0.218 Sum_probs=26.4
Q ss_pred eeecccCchhHHHHHHHHHHH-HHHHhhCchHHHHH---HHHHHHHHHHHHH
Q 047422 26 VFLWRRKNLSFTLLLVSTAIW-VLLEVYQFNFLTVA---SWLAMSIVSFTFL 73 (171)
Q Consensus 26 lllWrd~~~S~~vf~~~t~~~-~L~~~~~~s~iSvv---s~~~l~~l~~~fl 73 (171)
++.+||+..++..++...+.. .++...+..++.++ =|.+.+..+++|.
T Consensus 22 vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~qi~VYaGai~vLflF~ 73 (88)
T PRK06433 22 VVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVGAVLILITFA 73 (88)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889988887775543222 23344566665544 3445554444443
No 23
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=24.66 E-value=2.8e+02 Score=26.86 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 047422 111 EFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMG 169 (171)
Q Consensus 111 ~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lYe~~q 169 (171)
....+++++..|+|+.+++-+.++.+.+-| -+| +.=.+-.+++...+-+++.|||
T Consensus 501 ~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~-r~w---l~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 501 EIAKWLQKLASWEEPLKTLVFLALFLYIIY-RGW---LGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHHHHHhhccCcchhHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 456789999999999999865553332221 222 2233334444555556666665
No 24
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=23.85 E-value=3.7e+02 Score=24.59 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=19.0
Q ss_pred eecccCchhHHHHHHHHHHHHHHH
Q 047422 27 FLWRRKNLSFTLLLVSTAIWVLLE 50 (171)
Q Consensus 27 llWrd~~~S~~vf~~~t~~~~L~~ 50 (171)
-.||--..|-..++..+++|.-+.
T Consensus 58 ffykphTiTlL~i~~~~l~y~a~~ 81 (466)
T KOG2735|consen 58 FFYKPHTITLLLILICFLIYKAFT 81 (466)
T ss_pred heecCceehHHHHHHHHHHHHHHh
Confidence 578888888888888888877664
No 25
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.43 E-value=1.2e+02 Score=18.27 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhHHHHhhh
Q 047422 148 LTLLYTGIVMGMTVPVIYEKM 168 (171)
Q Consensus 148 lTLl~i~~v~~fTvP~lYe~~ 168 (171)
.|-+|.|.++.|.+-+++..|
T Consensus 16 RTSLy~GlLlifvl~vLFssY 36 (39)
T PRK00753 16 RTSLYLGLLLVFVLGILFSSY 36 (39)
T ss_pred hhhHHHHHHHHHHHHHHHHhh
Confidence 456777877777777776655
No 26
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=22.12 E-value=2.8e+02 Score=26.28 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=36.5
Q ss_pred cccCchhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCce
Q 047422 29 WRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGL 91 (171)
Q Consensus 29 Wrd~~~S~~vf~~~t~~~~L~~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~p~~~~~ 91 (171)
|+---..++...+.+++...+.+..-|++-.+.+.+.+++...+++.+..+++||+.+..|.+
T Consensus 515 ~~~~~~p~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~~fvnwPrl~~p~~ 577 (579)
T KOG1889|consen 515 LYILAAPIIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILINGDQFVNWPRLVLPQF 577 (579)
T ss_pred ceeehhhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheechHHhcCCccccCccc
Confidence 444334333443333322222233456666666666677777777777789999988776653
No 27
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=21.61 E-value=4.3e+02 Score=25.67 Aligned_cols=10 Identities=0% Similarity=0.109 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q 047422 141 VATFSDLLTL 150 (171)
Q Consensus 141 vGs~fs~lTL 150 (171)
+||++|++.-
T Consensus 437 ~~n~in~~a~ 446 (727)
T PRK11234 437 WGNLINFMAN 446 (727)
T ss_pred HHHHHHHHHH
Confidence 5888887755
No 28
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=21.61 E-value=1.6e+02 Score=24.06 Aligned_cols=42 Identities=10% Similarity=-0.044 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCCCC-------CCceeeCHHHHHHHHHHHHHHHHH
Q 047422 70 FTFLSGSIMRLLGKEPPK-------LSGLEISEKSALEVANSFRGVVEE 111 (171)
Q Consensus 70 ~~fl~~~~~~~~~~~~p~-------~~~~~isee~~~~~a~~~~~~~n~ 111 (171)
..+.|...++-+.--.|+ .+--+||.+.+...|-.+...+|.
T Consensus 28 ~~~gw~~aP~~ltih~PPDLrsGstr~~~eVP~~~VYaFa~yIfQQlN~ 76 (199)
T PF11444_consen 28 LIIGWMRAPKRLTIHNPPDLRSGSTRKWWEVPPETVYAFAFYIFQQLNR 76 (199)
T ss_pred HHHHHHhCCCceEEECCCccCCCceeEcccCChHHHHHHHHHHHHHHcc
Confidence 334566665544433333 255689999999999999999985
No 29
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.40 E-value=5.3e+02 Score=22.21 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC------CCceeeCHHHHHHHHHHHHHHHHHHHHHHhh
Q 047422 56 FLTVASWLAMSIVSFTFLSGSIMRLLGKEPPK------LSGLEISEKSALEVANSFRGVVEEFTRWMFH 118 (171)
Q Consensus 56 ~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~p~------~~~~~isee~~~~~a~~~~~~~n~~l~~l~~ 118 (171)
+..+++.++.+.++..++|+ +|-..++ ...-+.++|...++++.+.++.|+.-..+.+
T Consensus 57 l~~~~~~~~~~y~~F~~~WG-----lNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~ 120 (318)
T PF12725_consen 57 LLNILFFLSVLYFLFYLLWG-----LNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITE 120 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhh-----hhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35555555555555555676 3332222 1222578999999999999999988666654
No 30
>PRK04897 heat shock protein HtpX; Provisional
Probab=21.30 E-value=5.1e+02 Score=21.94 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=16.9
Q ss_pred ecccCchhHHHHHHHHHHHHHH
Q 047422 28 LWRRKNLSFTLLLVSTAIWVLL 49 (171)
Q Consensus 28 lWrd~~~S~~vf~~~t~~~~L~ 49 (171)
.|||+.+|..++++..+++.++
T Consensus 6 ~~~n~~~t~~ll~~~~~~~~~~ 27 (298)
T PRK04897 6 IASNKRKTVFLLVVFFLLLALV 27 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998776666555
No 31
>CHL00038 psbL photosystem II protein L
Probab=20.61 E-value=1.5e+02 Score=17.74 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhHHHHhhh
Q 047422 148 LTLLYTGIVMGMTVPVIYEKM 168 (171)
Q Consensus 148 lTLl~i~~v~~fTvP~lYe~~ 168 (171)
.|=+|.|.++.|.+-.++..|
T Consensus 15 RTSLy~GLLlifvl~vlfssy 35 (38)
T CHL00038 15 RTSLYWGLLLIFVLAVLFSNY 35 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766555
No 32
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=20.29 E-value=1.4e+02 Score=23.38 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhHHHHhhhcC
Q 047422 151 LYTGIVMGMTVPVIYEKMGI 170 (171)
Q Consensus 151 l~i~~v~~fTvP~lYe~~q~ 170 (171)
-|.|+++.|..|.+|.+|+.
T Consensus 37 g~~~~~~gF~~Pt~y~~yk~ 56 (152)
T PF07954_consen 37 GYGGFMAGFFAPTAYYRYKT 56 (152)
T ss_pred HHHHHHHHHhhHHHHHHHhc
Confidence 34778899999999999853
Done!