Query 047422
Match_columns 171
No_of_seqs 107 out of 403
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.1 1.3E-07 4.4E-12 65.1 -3.0 58 73-130 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.6 6.4E-07 2.2E-11 58.6 -5.3 50 75-124 4-60 (60)
3 2knc_A Integrin alpha-IIB; tra 77.3 5.8 0.0002 24.8 5.1 31 56-88 16-46 (54)
4 2l8s_A Integrin alpha-1; trans 75.2 7.4 0.00025 24.4 5.1 34 56-91 13-47 (54)
5 2k1a_A Integrin alpha-IIB; sin 58.1 14 0.00047 21.8 3.7 28 57-86 15-42 (42)
6 1rh5_B Preprotein translocase 22.3 1.6E+02 0.0054 19.2 4.6 35 123-157 32-67 (74)
7 2ww9_B Protein transport prote 22.0 1E+02 0.0035 20.5 3.7 48 95-143 15-66 (80)
8 3arc_L Photosystem II reaction 21.7 1E+02 0.0035 17.5 3.1 21 148-168 14-34 (37)
9 3b0c_W CENP-W, centromere prot 12.9 1.8E+02 0.006 18.5 3.1 39 79-120 12-50 (76)
10 4f4l_A ION transport protein; 11.5 2.1E+02 0.0073 19.4 3.4 26 61-86 7-33 (112)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.06 E-value=1.3e-07 Score=65.13 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCC---CCCC----CceeeCHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 047422 73 LSGSIMRLLGKE---PPKL----SGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQ 130 (171)
Q Consensus 73 l~~~~~~~~~~~---~p~~----~~~~isee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flk 130 (171)
+|+++.+.++|+ +|+. .|+.+|+|.++++++.+..++|.+++++|+++..+|+..++|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 788888888884 6774 799999999999999999999999999999999999887764
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.62 E-value=6.4e-07 Score=58.62 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=42.5
Q ss_pred HHHHHHhCC---CCCCC----CceeeCHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 047422 75 GSIMRLLGK---EPPKL----SGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKE 124 (171)
Q Consensus 75 ~~~~~~~~~---~~p~~----~~~~isee~~~~~a~~~~~~~n~~l~~l~~l~~~~d 124 (171)
+++.+.++| .||+. .|+.+|+|.++++++.+..++|.+++.+|+++..+|
T Consensus 4 k~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 4 KGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 344455555 48884 799999999999999999999999999999998876
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=77.27 E-value=5.8 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 047422 56 FLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKL 88 (171)
Q Consensus 56 ~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~p~~ 88 (171)
++++++-++++.+++..+|+. +|++|..|+.
T Consensus 16 i~svl~GLllL~li~~~LwK~--GFFkR~~~~~ 46 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKV--GFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CcccCCCCCc
Confidence 356667777777777778875 8999976653
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=75.17 E-value=7.4 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-CCce
Q 047422 56 FLTVASWLAMSIVSFTFLSGSIMRLLGKEPPK-LSGL 91 (171)
Q Consensus 56 ~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~p~-~~~~ 91 (171)
++|+++-++++++++..+|+. +|++|..|. ..|+
T Consensus 13 i~svl~GLLLL~Lii~~LwK~--GFFKR~~~~~~~~~ 47 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKI--GFFKRPLKKKMEKL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTTSCCSCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CcccCCCcchhhHH
Confidence 356677777777777778875 899997664 3444
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=58.06 E-value=14 Score=21.82 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 047422 57 LTVASWLAMSIVSFTFLSGSIMRLLGKEPP 86 (171)
Q Consensus 57 iSvvs~~~l~~l~~~fl~~~~~~~~~~~~p 86 (171)
+++++-++++.+++..+|+. ++++|..|
T Consensus 15 ~s~l~GLllL~li~~~LwK~--GFFkR~~~ 42 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWKV--GFFKRNRP 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHc--CcccCCCC
Confidence 55666666666666777864 78887654
No 6
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=22.30 E-value=1.6e+02 Score=19.24 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=18.6
Q ss_pred cchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 047422 123 KEWFVFAQAVA-GLLVLSYVATFSDLLTLLYTGIVM 157 (171)
Q Consensus 123 ~d~~~flkv~~-~L~ils~vGs~fs~lTLl~i~~v~ 157 (171)
+++.+..|+++ +..++..+|=.+...-...-+.+-
T Consensus 32 ~EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ii~ 67 (74)
T 1rh5_B 32 DEYLAVAKVTALGISLLGIIGYIIHVPATYIKGILK 67 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34444444444 666677777665555444444433
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=22.00 E-value=1e+02 Score=20.52 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHH---HH-HHHHHHHHHH
Q 047422 95 EKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQA---VA-GLLVLSYVAT 143 (171)
Q Consensus 95 ee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flkv---~~-~L~ils~vGs 143 (171)
-|+++++.+.+.+.++...+.+ ..+.--|.+.|.++ ++ +..++..+|=
T Consensus 15 ~d~~~~~~e~~~~f~kd~~rvl-k~~~KPdr~Ef~~iak~t~iG~~imG~IGf 66 (80)
T 2ww9_B 15 NNQVEKLVEAPVEFVREGTQFL-AKCKKPDLKEYTKIVKAVGIGFIAVGIIGY 66 (80)
T ss_dssp ------CCHHHHHHHHHHHHHH-HSCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444433222 23444455555543 33 4444554443
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=21.68 E-value=1e+02 Score=17.48 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhHHHHhhh
Q 047422 148 LTLLYTGIVMGMTVPVIYEKM 168 (171)
Q Consensus 148 lTLl~i~~v~~fTvP~lYe~~ 168 (171)
.|-+|.|.++.|.+-+++..|
T Consensus 14 RTSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhh
Confidence 466788888888777776655
No 9
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=12.93 E-value=1.8e+02 Score=18.53 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHhCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047422 79 RLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVS 120 (171)
Q Consensus 79 ~~~~~~~p~~~~~~isee~~~~~a~~~~~~~n~~l~~l~~l~ 120 (171)
++++..+| +..+|+|...-+.+.+...++..-....+++
T Consensus 12 rI~K~~~p---~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a 50 (76)
T 3b0c_W 12 KIIKKHKP---HLRLAANTDLLVHLSFLLFLHRLAEEARTNA 50 (76)
T ss_dssp HHHHHHCT---TCEECTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554455 6789988888777777776665555444443
No 10
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=11.50 E-value=2.1e+02 Score=19.43 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCCC
Q 047422 61 SWLAMSIVSFTFLSGSIM-RLLGKEPP 86 (171)
Q Consensus 61 s~~~l~~l~~~fl~~~~~-~~~~~~~p 86 (171)
++++++.+++.++|+.+. ++++...|
T Consensus 7 ~nv~~ll~l~~~ifAi~G~~lFg~~~~ 33 (112)
T 4f4l_A 7 GSVAALLTVVFYIAAVMATNLYGATFP 33 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 445555556666777666 66765544
Done!