Query 047422
Match_columns 171
No_of_seqs 107 out of 403
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 19:17:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047422.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047422hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 38.4 15 0.0011 21.5 3.3 32 88-119 25-56 (69)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 31.0 26 0.0019 18.5 3.1 21 148-168 14-34 (37)
3 d2gaua1 a.4.5.4 (A:152-232) Tr 20.5 55 0.004 19.1 3.8 31 89-119 26-56 (81)
4 d2mrba_ g.46.1.1 (A:) Metallot 20.0 40 0.0029 16.8 2.3 19 1-19 1-19 (31)
5 d1siqa2 e.6.1.1 (A:3-238) Glut 16.9 48 0.0035 23.3 3.2 17 81-97 2-18 (236)
6 d1k82a1 a.156.1.2 (A:129-216) 16.0 80 0.0058 19.3 3.8 33 82-114 50-82 (88)
7 d1wgua_ b.55.1.2 (A:) Amyloid 15.6 31 0.0023 22.7 1.7 14 6-19 1-14 (136)
8 d1r2za1 a.156.1.2 (A:135-228) 13.6 99 0.0072 19.0 3.8 34 81-114 49-82 (94)
9 d1pcfa_ d.18.1.1 (A:) Transcri 12.5 59 0.0043 19.3 2.2 30 86-116 37-66 (66)
10 d3e5ua1 a.4.5.4 (A:148-227) Ch 12.3 54 0.0039 19.2 2.0 31 89-119 27-57 (80)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.40 E-value=15 Score=21.51 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCceeeCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047422 88 LSGLEISEKSALEVANSFRGVVEEFTRWMFHV 119 (171)
Q Consensus 88 ~~~~~isee~~~~~a~~~~~~~n~~l~~l~~l 119 (171)
.-++.++++...++...-++.+|+.++.+++-
T Consensus 25 ~i~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 25 GMQIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp SCEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eeecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35678999999999999999999999999874
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.02 E-value=26 Score=18.52 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhHHHHhhh
Q 047422 148 LTLLYTGIVMGMTVPVIYEKM 168 (171)
Q Consensus 148 lTLl~i~~v~~fTvP~lYe~~ 168 (171)
.|-+|.|++..|.+-+++..|
T Consensus 14 rtsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 466788888888887777665
No 3
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=20.47 E-value=55 Score=19.08 Aligned_cols=31 Identities=6% Similarity=-0.081 Sum_probs=26.3
Q ss_pred CceeeCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047422 89 SGLEISEKSALEVANSFRGVVEEFTRWMFHV 119 (171)
Q Consensus 89 ~~~~isee~~~~~a~~~~~~~n~~l~~l~~l 119 (171)
-++.+|++...++...-+..+|+.++++++-
T Consensus 26 i~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 26 LSIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp BSCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EeecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4567899999889888899999999999774
No 4
>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=19.97 E-value=40 Score=16.83 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=13.8
Q ss_pred CCCCCCCcCCCCCCCCCCC
Q 047422 1 MDGTAGTEGSSSSSSCSDS 19 (171)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (171)
||.|-.-...+|+|++.++
T Consensus 1 mdpncscaaagdsc~ca~s 19 (31)
T d2mrba_ 1 MDPNCSCAAAGDSCTCANS 19 (31)
T ss_dssp CCSSCCCCCSSSCCCCSSC
T ss_pred CCCCccccccCCcccccCc
Confidence 6777766677788887753
No 5
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.88 E-value=48 Score=23.34 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=14.5
Q ss_pred hCCCCCCCCceeeCHHH
Q 047422 81 LGKEPPKLSGLEISEKS 97 (171)
Q Consensus 81 ~~~~~p~~~~~~isee~ 97 (171)
+|++.|...|+++|||+
T Consensus 2 ~~~~d~~~~d~~Lteeq 18 (236)
T d1siqa2 2 FDWQDPLVLEEQLTTDE 18 (236)
T ss_dssp CCTTSTTCGGGGSCHHH
T ss_pred CCCCCcccccccCCHHH
Confidence 57888998999999976
No 6
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=16.01 E-value=80 Score=19.28 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=26.6
Q ss_pred CCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHH
Q 047422 82 GKEPPKLSGLEISEKSALEVANSFRGVVEEFTR 114 (171)
Q Consensus 82 ~~~~p~~~~~~isee~~~~~a~~~~~~~n~~l~ 114 (171)
.+-+|..+--.++++.++++.+.++..++++++
T Consensus 50 a~I~P~~~~~~L~~~~~~~L~~~i~~vl~~a~~ 82 (88)
T d1k82a1 50 AGIHPDRLASSLSLAECELLARVIKAVLLRSIE 82 (88)
T ss_dssp HTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCccChHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 456787776778999999999998888887765
No 7
>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.61 E-value=31 Score=22.75 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.5
Q ss_pred CCcCCCCCCCCCCC
Q 047422 6 GTEGSSSSSSCSDS 19 (171)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (171)
|++|+++|.+.++.
T Consensus 1 ~s~~~~~P~~~~~~ 14 (136)
T d1wgua_ 1 GSSGSSGPTPKTEL 14 (136)
T ss_dssp CCSCCCCCCSCCCC
T ss_pred CCCCCCCCCCCCCc
Confidence 78899999988863
No 8
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.64 E-value=99 Score=19.05 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=26.4
Q ss_pred hCCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHH
Q 047422 81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTR 114 (171)
Q Consensus 81 ~~~~~p~~~~~~isee~~~~~a~~~~~~~n~~l~ 114 (171)
..+=+|..+--++|++..+++.+.++..++.+++
T Consensus 49 ~a~I~P~~~~~~Ls~~e~~~L~~~~~~vl~~ai~ 82 (94)
T d1r2za1 49 RAGILPGRPAASLSSKEIERLHEEMVATIGEAVM 82 (94)
T ss_dssp HHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456787766678999999999988887777654
No 9
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.50 E-value=59 Score=19.26 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=22.7
Q ss_pred CCCCceeeCHHHHHHHHHHHHHHHHHHHHHH
Q 047422 86 PKLSGLEISEKSALEVANSFRGVVEEFTRWM 116 (171)
Q Consensus 86 p~~~~~~isee~~~~~a~~~~~~~n~~l~~l 116 (171)
|...-+.++.|+..++.+. .+.+|.+++++
T Consensus 37 PgkKGIsL~~~qw~~l~~~-~~~i~~ai~~l 66 (66)
T d1pcfa_ 37 PGRKGISLNPEQWSQLKEQ-ISDIDDAVRKL 66 (66)
T ss_dssp EEEEEEEECHHHHHHHHHH-HHHHHHHHHHC
T ss_pred CCCCeEEECHHHHHHHHHH-HHHHHHHHHhC
Confidence 4456789999999988887 56677777653
No 10
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=12.27 E-value=54 Score=19.23 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=26.6
Q ss_pred CceeeCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047422 89 SGLEISEKSALEVANSFRGVVEEFTRWMFHV 119 (171)
Q Consensus 89 ~~~~isee~~~~~a~~~~~~~n~~l~~l~~l 119 (171)
-++.++++...+++..-++.+|+.++++++-
T Consensus 27 i~~~lt~~elA~~~g~sretvsr~l~~l~~~ 57 (80)
T d3e5ua1 27 ITMPLSQKSIGEITGVHHVTVSRVLASLKRE 57 (80)
T ss_dssp CCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred EeeCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4566889999999998899999999999874
Done!