BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047424
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
           Lgtc
          Length = 311

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 24/185 (12%)

Query: 157 NYARNYLGDILDPCVDRVIYIDSDLVLVDDIHKLWDITLTKSKIIGAPEYCHANFTKYFT 216
            YAR  LG+ +  C D+V+Y+D D+++ D +  LWD  L  +  +GA   C   F +   
Sbjct: 83  TYARLKLGEYIADC-DKVLYLDIDVLVRDSLTPLWDTDLGDN-WLGA---CIDLFVER-- 135

Query: 217 DNFWSDPLLSRVFGSRKPCYFNTGVMVMDLVRWRKGNYRKRIENWMEIQRRKRIYDLGSL 276
                +    ++  +    YFN GV++++L +WR+ +  K    W+E  +    Y    +
Sbjct: 136 ----QEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDI 191

Query: 277 PPFLLVFAGNVEAIDHRWNQHGLGGDNVKGSCRSLHPG-----------PVSLLHWSGKG 325
              L  F G V   + R+N        +     S H             PV++ H+ G  
Sbjct: 192 LNGL--FKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHYCGPA 249

Query: 326 KPWVR 330
           KPW R
Sbjct: 250 KPWHR 254


>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
           With Mn And Udp-2f-Galactose
 pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
           With Donor And Acceptor Sugar Analogs
          Length = 311

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 24/185 (12%)

Query: 157 NYARNYLGDILDPCVDRVIYIDSDLVLVDDIHKLWDITLTKSKIIGAPEYCHANFTKYFT 216
            YAR  LG+ +  C D+V+Y+D D+++ D +  LWD  L  +  +GA           F 
Sbjct: 83  TYARLKLGEYIADC-DKVLYLDIDVLVRDSLTPLWDTDLGDN-WLGAS-------IDLFV 133

Query: 217 DNFWSDPLLSRVFGSRKPCYFNTGVMVMDLVRWRKGNYRKRIENWMEIQRRKRIYDLGSL 276
           +    +    ++  +    YFN GV++++L +WR+ +  K    W+E  +    Y    +
Sbjct: 134 ER--QEGYKQKIGXADGEYYFNAGVLLINLKKWRRHDIFKXSSEWVEQYKDVXQYQDQDI 191

Query: 277 PPFLLVFAGNVEAIDHRWNQHGLGGDNVKGSCRSLHPG-----------PVSLLHWSGKG 325
              L  F G V   + R+N              S H             PV++ H+ G  
Sbjct: 192 LNGL--FKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVAVSHYCGPA 249

Query: 326 KPWVR 330
           KPW R
Sbjct: 250 KPWHR 254


>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
           Thermostable Carboxylesterase Cloned From A Metagenomic
           Library
 pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
           Thermostable Carboxylesterase Cloned From A Metagenomic
           Library
          Length = 311

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 238 NTGVMVMDLVRWRKGNYRKRIENWMEIQRRKRIYDLGSLPPFLLVFA 284
            T  + ++L  W    Y KR E   + +    + DLG LPP L+V A
Sbjct: 202 ETTSLPIELXVWFGRQYLKRPEEAYDFKASPLLADLGGLPPALVVTA 248


>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
           Cryo-Em Map
          Length = 515

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 67  SLVHVAMTLDSEYLRGSIAAVHSALKHASCPENIFFHFISAEFD-----SASPRVLTQLV 121
           S++ ++ T D E   G+ + +  A +  S  E    HF+  +       SA  + L  ++
Sbjct: 67  SMIEISRTQDEEVGDGTTSVIILAGEMLSVAE----HFLEQQMHPTVVISAYRKALDDMI 122

Query: 122 RSTFPSLNFKVYIFREDTVINLISSSI 148
            ST   ++  V     DT++N+I+SSI
Sbjct: 123 -STLKKISIPVDTSNRDTMLNIINSSI 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,926,106
Number of Sequences: 62578
Number of extensions: 526706
Number of successful extensions: 918
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 6
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)