BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047429
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 163/405 (40%), Gaps = 115/405 (28%)
Query: 113 LSHISKSLVYLDLSNNQLQGPT-PDYAFRNMTSLASL-TSLNYITGISKCSLPITLVRPK 170
L+++S SL+ LDLS+N GP P+ +L L N TG +P TL
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG----KIPPTL---- 411
Query: 171 YAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAK 229
SN + L+ L LS N ++G IP S G + L+ LK+ N+L ++P+ +
Sbjct: 412 ---SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV------ 462
Query: 230 KSLQSFMLQNNMLSGSLP-GVT-------------ELDGTFPKQFCRPSSLVELDLESNQ 275
K+L++ +L N L+G +P G++ L G PK R +L L L +N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRI 335
+G+ +L L LD + N +G +P + S + ++N I R
Sbjct: 523 F-------SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIAGKRY 572
Query: 336 QLIDD---------------------------------------------PEFDYQDRAL 350
I + P FD +
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 351 LVWKPIDSIYKITLG-LPKSI---------DLSDNNLSGKIPEEITSL------------ 388
+D Y + G +PK I +L N++SG IP+E+ L
Sbjct: 633 F----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 389 LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKN 433
L G+IP++ S L+ L ++LSNNN SG IP +TF + + N
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 140/342 (40%), Gaps = 96/342 (28%)
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L L++S+NQ GP P +++ L+ + N TG P + +L
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKSLQYLS--LAENKFTG----------EIPDFLSGACDTL 293
Query: 180 MDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238
LDLS N G +P FG L++L + N + +LP L + L+ L
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-----LKMRGLKVLDLS 348
Query: 239 NNMLSGSLP-GVTELDGTFPKQFCRPSSLVELDLESN-------------------QLWL 278
N SG LP +T L +SL+ LDL SN +L+L
Sbjct: 349 FNEFSGELPESLTNLS----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 279 RFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLI 338
+ N G P L + L L S N +SG +P+ L +LS +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL----------------- 441
Query: 339 DDPEFDYQDRALLVW-------KPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL--- 388
R L +W P + +Y TL +++ L N+L+G+IP +++
Sbjct: 442 ---------RDLKLWLNMLEGEIPQELMYVKTL---ETLILDFNDLTGEIPSGLSNCTNL 489
Query: 389 ---------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
L G+IP+ +L +L ++ LSNN+FSG IP+ +
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 135/339 (39%), Gaps = 77/339 (22%)
Query: 108 SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLV 167
S + C S SL LDLS N L GP +TSL S + L ++ S TL
Sbjct: 91 SGFKC----SASLTSLDLSRNSLSGPV-----TTLTSLGSCSGLKFLNVSSN-----TLD 136
Query: 168 RPKYAFSN--VTSLMDLDLSKNQITG---IPKSFGDMCC-LKTLKIHDNILTAKLPE--- 218
P + SL LDLS N I+G + D C LK L I N ++ +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 196
Query: 219 ---LFL-----NFSAG------CAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS 264
FL NFS G C+ +LQ + N LSG F + +
Sbjct: 197 VNLEFLDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGD----------FSRAISTCT 244
Query: 265 SLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL----NNLSA 320
L L++ SNQ G P S LQ L + N +G +P L + L+
Sbjct: 245 ELKLLNISSNQFV-------GPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 321 MVQNGSS--NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378
+ +G+ + + P+D++ K+ GL K +DLS N S
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GL-KVLDLSFNEFS 353
Query: 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKI 417
G++PE +T+L + L ++LS+NNFSG I
Sbjct: 354 GELPESLTNL-----------SASLLTLDLSSNNFSGPI 381
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 63/234 (26%)
Query: 255 TFPKQFCRPSSLVELDLESNQLWLRF--------------------NHINGSATPKLCSS 294
TF CR + +DL S L + F +HINGS + CS+
Sbjct: 38 TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA 97
Query: 295 PMLQVLDFSHNNISGMVP--TCLNNLSAM-VQNGSSNV----------IVEYRIQLIDDP 341
L LD S N++SG V T L + S + N SSN + ++++D
Sbjct: 98 S-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 342 EFDYQDRALLVWKPID----------SIYKITLGLPKS-------IDLSDNNLSGKIP-- 382
++ W D S KI+ + S +D+S NN S IP
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 383 EEITSL---------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE 427
+ ++L L G R+ S + L ++N+S+N F G IP +PL++ +
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQ 269
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 64/276 (23%)
Query: 172 AFSNVTSLMDLDLSKNQITG---IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228
F SL LDLS+N ++G S G LK L + N L + S G
Sbjct: 92 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-----DFPGKVSGGLK 146
Query: 229 KKSLQSFMLQNNMLSGS-LPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSA 287
SL+ L N +SG+ + G DG C E L + N I+G
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDG------CG---------ELKHLAISGNKISGDV 191
Query: 288 TPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ------------NGSSNVIVEYRI 335
C + L+ LD S NN S +P L + SA+ + + + E ++
Sbjct: 192 DVSRCVN--LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 336 QLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIP-------EEITSL 388
I +F + I + L + + L++N +G+IP + +T L
Sbjct: 249 LNISSNQF------------VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 389 ------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
G +P F S L + LS+NNFSG++P
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 163/405 (40%), Gaps = 115/405 (28%)
Query: 113 LSHISKSLVYLDLSNNQLQGPT-PDYAFRNMTSLASL-TSLNYITGISKCSLPITLVRPK 170
L+++S SL+ LDLS+N GP P+ +L L N TG +P TL
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG----KIPPTL---- 414
Query: 171 YAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAK 229
SN + L+ L LS N ++G IP S G + L+ LK+ N+L ++P+ +
Sbjct: 415 ---SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV------ 465
Query: 230 KSLQSFMLQNNMLSGSLP-GVT-------------ELDGTFPKQFCRPSSLVELDLESNQ 275
K+L++ +L N L+G +P G++ L G PK R +L L L +N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRI 335
+G+ +L L LD + N +G +P + S + ++N I R
Sbjct: 526 F-------SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIAGKRY 575
Query: 336 QLIDD---------------------------------------------PEFDYQDRAL 350
I + P FD +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 351 LVWKPIDSIYKITLG-LPKSI---------DLSDNNLSGKIPEEITSL------------ 388
+D Y + G +PK I +L N++SG IP+E+ L
Sbjct: 636 F----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 389 LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKN 433
L G+IP++ S L+ L ++LSNNN SG IP +TF + + N
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 140/342 (40%), Gaps = 96/342 (28%)
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L L++S+NQ GP P +++ L+ + N TG P + +L
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLS--LAENKFTG----------EIPDFLSGACDTL 296
Query: 180 MDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238
LDLS N G +P FG L++L + N + +LP L + L+ L
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-----LKMRGLKVLDLS 351
Query: 239 NNMLSGSLP-GVTELDGTFPKQFCRPSSLVELDLESN-------------------QLWL 278
N SG LP +T L +SL+ LDL SN +L+L
Sbjct: 352 FNEFSGELPESLTNLS----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 279 RFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLI 338
+ N G P L + L L S N +SG +P+ L +LS +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL----------------- 444
Query: 339 DDPEFDYQDRALLVW-------KPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL--- 388
R L +W P + +Y TL +++ L N+L+G+IP +++
Sbjct: 445 ---------RDLKLWLNMLEGEIPQELMYVKTL---ETLILDFNDLTGEIPSGLSNCTNL 492
Query: 389 ---------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421
L G+IP+ +L +L ++ LSNN+FSG IP+ +
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 135/339 (39%), Gaps = 77/339 (22%)
Query: 108 SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLV 167
S + C S SL LDLS N L GP +TSL S + L ++ S TL
Sbjct: 94 SGFKC----SASLTSLDLSRNSLSGPV-----TTLTSLGSCSGLKFLNVSSN-----TLD 139
Query: 168 RPKYAFSN--VTSLMDLDLSKNQITG---IPKSFGDMCC-LKTLKIHDNILTAKLPE--- 218
P + SL LDLS N I+G + D C LK L I N ++ +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199
Query: 219 ---LFL-----NFSAG------CAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS 264
FL NFS G C+ +LQ + N LSG F + +
Sbjct: 200 VNLEFLDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGD----------FSRAISTCT 247
Query: 265 SLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL----NNLSA 320
L L++ SNQ G P S LQ L + N +G +P L + L+
Sbjct: 248 ELKLLNISSNQFV-------GPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 321 MVQNGSS--NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378
+ +G+ + + P+D++ K+ GL K +DLS N S
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GL-KVLDLSFNEFS 356
Query: 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKI 417
G++PE +T+L + L ++LS+NNFSG I
Sbjct: 357 GELPESLTNL-----------SASLLTLDLSSNNFSGPI 384
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 63/234 (26%)
Query: 255 TFPKQFCRPSSLVELDLESNQLWLRF--------------------NHINGSATPKLCSS 294
TF CR + +DL S L + F +HINGS + CS+
Sbjct: 41 TFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA 100
Query: 295 PMLQVLDFSHNNISGMVP--TCLNNLSAM-VQNGSSNV----------IVEYRIQLIDDP 341
L LD S N++SG V T L + S + N SSN + ++++D
Sbjct: 101 -SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 342 EFDYQDRALLVWKPID----------SIYKITLGLPKS-------IDLSDNNLSGKIP-- 382
++ W D S KI+ + S +D+S NN S IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 383 EEITSL---------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE 427
+ ++L L G R+ S + L ++N+S+N F G IP +PL++ +
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQ 272
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 107/276 (38%), Gaps = 64/276 (23%)
Query: 172 AFSNVTSLMDLDLSKNQITG---IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228
F SL LDLS+N ++G S G LK L + N L + S G
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-----DFPGKVSGGLK 149
Query: 229 KKSLQSFMLQNNMLSGS-LPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSA 287
SL+ L N +SG+ + G DG C E L + N I+G
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDG------CG---------ELKHLAISGNKISGDV 194
Query: 288 TPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ------------NGSSNVIVEYRI 335
C + L+ LD S NN S +P L + SA+ + + + E ++
Sbjct: 195 DVSRCVN--LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 336 QLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIP-------EEITSL 388
I +F + I + L + + L++N +G+IP + +T L
Sbjct: 252 LNISSNQF------------VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 389 ------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418
G +P F S L + LS+NNFSG++P
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 26/200 (13%)
Query: 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309
T + G P + +LV LD +N ++G+ P + S P L + F N ISG
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFS-------YNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 310 MVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRAL--LVWKPIDSIYKITLGLP 367
+P + S + +S I R+ P F + A L ++ + G
Sbjct: 164 AIPDSYGSFSKLF---TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220
Query: 368 KS---IDLSDNNLS---GKI--PEEITSL------LIGKIPRSFSQLSHLGVVNLSNNNF 413
K+ I L+ N+L+ GK+ + + L + G +P+ +QL L +N+S NN
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 414 SGKIPSSIPLQTFEASAYKN 433
G+IP LQ F+ SAY N
Sbjct: 281 CGEIPQGGNLQRFDVSAYAN 300
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYA 172
LS I K+LV LD S N L G P S++SL + GI+ I+ P
Sbjct: 121 LSQI-KTLVTLDFSYNALSGTLP----------PSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 173 FSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELF----------- 220
S + +S+N++TG IP +F ++ L + + N+L LF
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 221 ----LNFSAGCA--KKSLQSFMLQNNMLSGSLP-GVTEL 252
L F G K+L L+NN + G+LP G+T+L
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 22/149 (14%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT------------SLNYITGISKCSLPITL 166
+L YL L+ NQLQ P+ F +T+L L + +T ++ +L
Sbjct: 86 NLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 167 VR--PKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNF 223
++ PK F +T+L +LDLS NQ+ +P+ F + LK L+++ N L + +F
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252
+ SLQ L +N + PG+ L
Sbjct: 205 T------SLQYIWLHDNPWDCTCPGIRYL 227
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
LDL NN++ D F+N+ +L +L +N ISK S AF+ + L L
Sbjct: 57 LDLQNNKIT-EIKDGDFKNLKNLHTLILIN--NKISKIS--------PGAFAPLVKLERL 105
Query: 183 DLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242
LSKNQ+ +P+ L+ L++H+N +T +F + + + + + +
Sbjct: 106 YLSKNQLKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 243 SGSLPGVTELD---------GTFPKQFCRPSSLVELDLESN-----------------QL 276
+G+ G+ +L T P+ P SL EL L+ N +L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNI 307
L FN I+ L ++P L+ L ++N +
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
LDL NN++ D F+N+ +L +L +N ISK S AF+ + L L
Sbjct: 57 LDLQNNKIT-EIKDGDFKNLKNLHTLILIN--NKISKIS--------PGAFAPLVKLERL 105
Query: 183 DLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242
LSKNQ+ +P+ L+ L++H+N +T +F + + + + + +
Sbjct: 106 YLSKNQLKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 243 SGSLPGVTELD---------GTFPKQFCRPSSLVELDLESN-----------------QL 276
+G+ G+ +L T P+ P SL EL L+ N +L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNI 307
L FN I+ L ++P L+ L ++N +
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 48/212 (22%)
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNY----------ITGISKCSL 162
L +++K LV + ++NNQ+ TP N+T+L LT N +T +++ L
Sbjct: 81 LKNLTK-LVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222
+ A S +TSL L+ S NQ+T + K ++ L+ L I N ++ +
Sbjct: 137 SSNTISDISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVS--------D 187
Query: 223 FSAGCAKKSLQSFMLQNNMLSGSLP-GV-TELDGTFPKQFCRPSSLVELDLESNQLWLRF 280
S +L+S + NN +S P G+ T LD EL L NQL
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLD--------------ELSLNGNQL---- 229
Query: 281 NHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312
L S L LD ++N IS + P
Sbjct: 230 -----KDIGTLASLTNLTDLDLANNQISNLAP 256
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSL-------ASLTSLNYITGISKCSLPITLVRPKY 171
+L LD+S+N++ + N+ SL + +T L +T + + SL ++
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+++T+L DLDL+ NQI+ + G + L LK+ N
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGAN 271
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 48/212 (22%)
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNY----------ITGISKCSL 162
L +++K LV + ++NNQ+ TP N+T+L LT N +T +++ L
Sbjct: 81 LKNLTK-LVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222
+ A S +TSL L S NQ+T + K ++ L+ L I N ++ +
Sbjct: 137 SSNTISDISALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVS--------D 187
Query: 223 FSAGCAKKSLQSFMLQNNMLSGSLP-GV-TELDGTFPKQFCRPSSLVELDLESNQLWLRF 280
S +L+S + NN +S P G+ T LD EL L NQL
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLD--------------ELSLNGNQL---- 229
Query: 281 NHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312
L S L LD ++N IS + P
Sbjct: 230 -----KDIGTLASLTNLTDLDLANNQISNLAP 256
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSL-------ASLTSLNYITGISKCSLPITLVRPKY 171
+L LD+S+N++ + N+ SL + +T L +T + + SL ++
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+++T+L DLDL+ NQI+ + G + L LK+ N
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGAN 271
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 48/212 (22%)
Query: 113 LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNY----------ITGISKCSL 162
L +++K LV + ++NNQ+ TP N+T+L LT N +T +++ L
Sbjct: 81 LKNLTK-LVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222
+ A S +TSL L S NQ+T + K ++ L+ L I N ++ +
Sbjct: 137 SSNTISDISALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVS--------D 187
Query: 223 FSAGCAKKSLQSFMLQNNMLSGSLP-GV-TELDGTFPKQFCRPSSLVELDLESNQLWLRF 280
S +L+S + NN +S P G+ T LD EL L NQL
Sbjct: 188 ISVLAKLTNLESLIATNNQISDITPLGILTNLD--------------ELSLNGNQL---- 229
Query: 281 NHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312
L S L LD ++N IS + P
Sbjct: 230 -----KDIGTLASLTNLTDLDLANNQISNLAP 256
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSL-------ASLTSLNYITGISKCSLPITLVRPKY 171
+L LD+S+N++ + N+ SL + +T L +T + + SL ++
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 233
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+++T+L DLDL+ NQI+ + G + L LK+ N
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGAN 271
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 34/148 (22%)
Query: 173 FSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
F + L+ L+L +NQ+TGI P +F ++ L++ +N + ++FL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL------HQ 103
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL-----------WLRF 280
L++ L +N +S +PG E +SL L+L SN WLR
Sbjct: 104 LKTLNLYDNQISCVMPGSFE----------HLNSLTSLNLASNPFNCNCHLAWFAEWLRK 153
Query: 281 NHINGSATPKLCSSPM----LQVLDFSH 304
+NG A C +P +Q+ D H
Sbjct: 154 KSLNGGAA--RCGAPSKVRDVQIKDLPH 179
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAF 173
+ I YLDL N L+ P+ F +TSL L Y+ G SLP F
Sbjct: 24 TGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQL----YLGGNKLQSLP------NGVF 72
Query: 174 SNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPE 218
+ +TSL L+LS NQ+ +P F + LK L ++ N L + LP+
Sbjct: 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPD 117
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTS 178
+L L L NQL+ P F ++T L L SL Y S PK F +TS
Sbjct: 110 NLAELRLDRNQLKS-LPPRVFDSLTKLTYL-SLGYNELQS---------LPKGVFDKLTS 158
Query: 179 LMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPE 218
L +L L NQ+ +P+ +F + LKTLK+ +N L ++PE
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPE 198
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT------------SLNYITGISKCSLPITL 166
+L YL L+ NQLQ P+ F +T+L L + +T ++ L
Sbjct: 86 NLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 167 VR--PKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTA 214
++ PK F +T+L LDL NQ+ +P+ F + LK L ++DN L +
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
LDLSN Q+ + N+ LT L Y+ G S LP + N+++L L
Sbjct: 229 LDLSNLQIFNISA-----NIFKYDFLTRL-YLNGNSLTELPAEI-------KNLSNLRVL 275
Query: 183 DLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222
DLS N++T +P G LK DN++T LP F N
Sbjct: 276 DLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGN 314
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
LDL ++++ PD AF+ + L L + C L +++ Y F N+ +L L
Sbjct: 78 LDLGSSKIYFLHPD-AFQGLFHLFELR-------LYFCGLSDAVLKDGY-FRNLKALTRL 128
Query: 183 DLSKNQITG--IPKSFGDMCCLKTLKIHDN 210
DLSKNQI + SFG + LK++ N
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 22/149 (14%)
Query: 216 LPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275
+PE FL FS + + S NN ++ L GV E +S ++ D+ N+
Sbjct: 4 VPEAFLLFSRRADIRRI-SLETNNNNVAIPLTGVKE------------ASALDFDVTDNR 50
Query: 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRI 335
++ + + + S + V++F + GM L G++ + V
Sbjct: 51 IYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS--- 107
Query: 336 QLIDDPEFDYQDRALLVWKPIDSIYKITL 364
+ D Q R +LVWK +DS + L
Sbjct: 108 ------KLDGQHRQVLVWKDLDSPRALAL 130
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 22/149 (14%)
Query: 216 LPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275
+PE FL FS + + S NN ++ L GV E +S ++ D+ N+
Sbjct: 9 VPEAFLLFSRRADIRRI-SLETNNNNVAIPLTGVKE------------ASALDFDVTDNR 55
Query: 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRI 335
++ + + + S + V++F + GM L G++ + V
Sbjct: 56 IYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS--- 112
Query: 336 QLIDDPEFDYQDRALLVWKPIDSIYKITL 364
+ D Q R +LVWK +DS + L
Sbjct: 113 ------KLDGQHRQVLVWKDLDSPRALAL 135
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 27/180 (15%)
Query: 153 YITGISKCSLPITLVR--PKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHD 209
Y I K + +R P + F NV L L L +N ++ +P+ F + L TL + +
Sbjct: 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150
Query: 210 NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS----LPGVTELDGTFP--KQFCRP 263
N L + F A SLQ+ L +N L+ +P + + ++ P
Sbjct: 151 NNLERIEDDTF------QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204
Query: 264 SSLVELDLESNQL------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311
++ ELD N + L+ H N + T L + P L +D S+N + ++
Sbjct: 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 264
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 172 AFSNVTSLMDLDLSKNQITG-----IPKSFG---DMCCLKTLKIHDNILTAKLPELFLNF 223
F TSL +L LS N++T IP F L TL I + +N
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 219
Query: 224 SAGCAKKSLQSFMLQNNMLSGS-----LPGVTELDGTFPK-------QFCRPSSLVELDL 271
G L LQ+N L+ + PG+ E+D ++ + F + L L +
Sbjct: 220 VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279
Query: 272 ESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNI 307
+N+L +N P P L+VLD SHN++
Sbjct: 280 SNNRLVA----LNLYGQP----IPTLKVLDLSHNHL 307
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 42/202 (20%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDL 182
L+L+ N + P AF N+ +L +L G+ L + P F+ +++L L
Sbjct: 61 LELNENIVSAVEPG-AFNNLFNLRTL-------GLRSNRLKLI---PLGVFTGLSNLTKL 109
Query: 183 DLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN-N 240
D+S+N+I + F D+ LK+L++ DN L ++++ A SL+ L+ N
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDL------VYISHRAFSGLNSLEQLTLEKCN 163
Query: 241 MLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPM--LQ 298
+ S ++ L G + LR H+N +A + L+
Sbjct: 164 LTSIPTEALSHLHGL--------------------IVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 299 VLDFSH-NNISGMVPTCLNNLS 319
VL+ SH + M P CL L+
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLN 225
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 217 PELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276
PE FL FS + + S NN ++ L GV E +S ++ D+ N++
Sbjct: 3 PEAFLLFSRRADIRRI-SLETNNNNVAIPLTGVKE------------ASALDFDVTDNRI 49
Query: 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQ 336
+ + + + S + V++F + GM L G++ + V
Sbjct: 50 YWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS---- 105
Query: 337 LIDDPEFDYQDRALLVWKPIDSIYKITL 364
+ D Q R +LVWK +DS + L
Sbjct: 106 -----KLDGQHRQVLVWKDLDSPRALAL 128
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 27/180 (15%)
Query: 153 YITGISKCSLPITLVR--PKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHD 209
Y I K + +R P + F NV L L L +N ++ +P+ F + L TL + +
Sbjct: 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156
Query: 210 NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS----LPGVTELDGTFP--KQFCRP 263
N L + F A SLQ+ L +N L+ +P + + ++ P
Sbjct: 157 NNLERIEDDTF------QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210
Query: 264 SSLVELDLESNQL------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311
++ ELD N + L+ H N + T L + P L +D S+N + ++
Sbjct: 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM 270
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 28/156 (17%)
Query: 172 AFSNVTSLMDLDLSKNQITG-----IPKSFGDMCC---LKTLKIHDNILTAKLPELFLNF 223
F TSL +L LS N++T IP F L TL I + +N
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225
Query: 224 SAGCAKKSLQSFMLQNNMLSGS-----LPGVTELDGTFPK-------QFCRPSSLVELDL 271
G L LQ+N L+ + PG+ E+D ++ + F + L L +
Sbjct: 226 VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285
Query: 272 ESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNI 307
+N+L +N P P L+VLD SHN++
Sbjct: 286 SNNRLVA----LNLYGQP----IPTLKVLDLSHNHL 313
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 182 LDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
LDLS N++ +P + + CL+ L+ DN L N LQ +L NN
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDNALE--------NVDGVANLPRLQELLLCNNR 519
Query: 242 LSGS 245
L S
Sbjct: 520 LQQS 523
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 182 LDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241
LDLS N++ +P + + CL+ L+ DN L N LQ +L NN
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDNALE--------NVDGVANLPRLQELLLCNNR 519
Query: 242 LSGS 245
L S
Sbjct: 520 LQQS 523
>pdb|1TMF|1 Chain 1, Three-Dimensional Structure Of Theiler Murine
Encephalomyelitis Virus (Bean Strain)
Length = 276
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 346 QDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS------GKIPEEITSLLIGKIPR-SFS 398
QD A L + P + YK L + S +D S P ++T LIG P +
Sbjct: 112 QDYAFLCFSPF-TFYKCDLEVTVSALGTDTVASVLRWAPTGAPADVTDQLIGYTPSLGET 170
Query: 399 QLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWT 435
+ H+ +V N+ S +P + PL A+ + W+
Sbjct: 171 RNPHMWLVGAGNSQVSFVVPYNSPLSVLPAAWFNGWS 207
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSN 175
IS LDL NN + D F+ + L +L +N ISK + AFS
Sbjct: 52 ISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVN--NKISKIH--------EKAFSP 100
Query: 176 VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+ L L +SKN + IP + L L+IHDN
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDN 133
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 301 DFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFD 344
DF HN S T + LS M +G ++V V I+ PEFD
Sbjct: 34 DFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIEGESTPEFD 77
>pdb|1TME|1 Chain 1, Three-Dimensional Structure Of Theiler Virus
Length = 274
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 346 QDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS------GKIPEEITSLLIGKIPR-SFS 398
QD A L + P + YK L + S +D S P ++T LIG P +
Sbjct: 110 QDYAFLCFSPF-TYYKCDLEVTVSALGTDTVASVLRWAPTGAPADVTDQLIGYTPSLGET 168
Query: 399 QLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWT 435
+ H+ +V N S +P + PL A+ + W+
Sbjct: 169 RNPHMWLVGAGNTQISFVVPYNSPLSVLPAAWFNGWS 205
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L L L+NNQL P F ++T L L Y+ G SLP F +T L
Sbjct: 85 LGTLGLANNQL-ASLPLGVFDHLTQLDKL----YLGGNQLKSLP------SGVFDRLTKL 133
Query: 180 MDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNIL 212
+L L+ NQ+ IP +F + L+TL + N L
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSL 179
L L L+NNQL P F ++T L L Y+ G SLP F +T L
Sbjct: 85 LGTLGLANNQL-ASLPLGVFDHLTQLDKL----YLGGNQLKSLP------SGVFDRLTKL 133
Query: 180 MDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNIL 212
+L L+ NQ+ IP +F + L+TL + N L
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 57/205 (27%)
Query: 123 LDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMD 181
LDLS+N L ++ +T+L SL S N++ IS AF V +L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-----------EAFVPVPNLRY 92
Query: 182 LDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNN 240
LDLS N + + + F D+ L+ L +++N + F + + LQ L N
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQN 146
Query: 241 MLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVL 300
+S FP VEL + N+L P L +L
Sbjct: 147 QIS-----------RFP---------VELIKDGNKL------------------PKLMLL 168
Query: 301 DFSHNNISGMVPTCLNNLSAMVQNG 325
D S N + + T L L A V+NG
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNG 193
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 172 AFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSA 225
+FSN+T L+ L LS N++ I P++F + L+ L +H N ++ F + SA
Sbjct: 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLN------------YI 154
+ AY LSH+S L L+ N +Q AF ++SL L +L ++
Sbjct: 71 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVALETNLASLENFPIGHL 125
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 126 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 166
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS------------LNYI 154
+ AY LSH+S L L+ N +Q AF ++SL L + + ++
Sbjct: 69 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 124 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS------------LNYI 154
+ AY LSH+S L L+ N +Q AF ++SL L + + ++
Sbjct: 69 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 124 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS------------LNYI 154
+ AY LSH+S L L+ N +Q AF ++SL L + + ++
Sbjct: 93 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL 147
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 148 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSL-------ASLTSLNYITGISKCSLPITLVRPKY 171
+L LD+S+N++ + N+ SL + +T L +T + + SL ++
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+++T+L DLDL+ NQI+ + G + L LK+ N
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGAN 270
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSL-------ASLTSLNYITGISKCSLPITLVRPKY 171
+L LD+S+N++ + N+ SL + +T L +T + + SL ++
Sbjct: 177 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 236
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+++T+L DLDL+ NQI+ + G + L LK+ N
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGAN 274
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSL-------ASLTSLNYITGISKCSLPITLVRPKY 171
+L LD+S+N++ + N+ SL + +T L +T + + SL ++
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 237
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+++T+L DLDL+ NQI+ + G + L LK+ N
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGAN 275
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 28/219 (12%)
Query: 112 CLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKY 171
CL ++ ++L LDLS++ ++ T D + +L+ L SLN + P++L +
Sbjct: 345 CLENL-ENLRELDLSHDDIE--TSDCCNLQLRNLSHLQSLNL-----SYNEPLSLKTEAF 396
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231
L+DL ++ ++ F ++ LK L + ++L +LF A
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA------ 450
Query: 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL 291
LQ LQ N FPK + ++ ++ L L F ++
Sbjct: 451 LQHLNLQGNH--------------FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI 330
S M+ +D SHN ++ L++L + N +SN I
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 119 SLVYLDLSNNQLQGPTPDYAFRNMTSL-------ASLTSLNYITGISKCSLPITLVRPKY 171
+L LD+S+N++ + N+ SL + +T L +T + + SL ++
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG 232
Query: 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210
+++T+L DLDL+ NQI+ + G + L LK+ N
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGAN 270
>pdb|1JI6|A Chain A, Crystal Structure Of The Insecticidal Bacterial Del
Endotoxin Cry3bb1 Bacillus Thuringiensis
Length = 589
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 19 NIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDL 50
N+GLN +R +D W+ ++ ++L LDL
Sbjct: 186 NVGLNGLRGSTYDAWVKFNRFRREMTLTVLDL 217
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS------------LNYI 154
+ AY LSH+S L L+ N +Q AF ++SL L + + ++
Sbjct: 71 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 126 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS------------LNYI 154
+ AY LSH+S L L+ N +Q AF ++SL L + + ++
Sbjct: 69 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 124 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL-NYITGISKCSLPITLVRPKYAFSNV 176
K L +DLSNNQ+ PD AF+ + SL SL N IT + PK F +
Sbjct: 56 KKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITEL-----------PKSLFEGL 103
Query: 177 TSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNIL 212
SL L L+ N+I + +F D+ L L ++DN L
Sbjct: 104 FSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 167 VRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELF 220
V P AFS L +DLS NQI+ + P +F + L +L ++ N +T LF
Sbjct: 46 VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 169 PKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTA 214
P F +T L L LS+NQI +P F + L L +H+N L +
Sbjct: 44 PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS------------LNYI 154
+ AY LSH+S L L+ N +Q AF ++SL L + + ++
Sbjct: 70 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 125 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 22/102 (21%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTS------------LNYI 154
+ AY LSH+S L L+ N +Q AF ++SL L + + ++
Sbjct: 70 DGAYQSLSHLST----LILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 155 TGISKCSLPITLVR----PKYAFSNVTSLMDLDLSKNQITGI 192
+ + ++ L++ P+Y FSN+T+L LDLS N+I I
Sbjct: 125 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 165
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL-NYITGISKCSLPITLVRPKYAFSNV 176
K L +DLSNNQ+ PD AF+ + SL SL N IT + PK F +
Sbjct: 56 KKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITEL-----------PKSLFEGL 103
Query: 177 TSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNIL 212
SL L L+ N+I + +F D+ L L ++DN L
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 167 VRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELF 220
V P AFS L +DLS NQI+ + P +F + L +L ++ N +T LF
Sbjct: 46 VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS-PMLQVLDFSHNNISGM 310
F R S L LD+ N + P+LC PML+VL+ HN +S +
Sbjct: 50 FTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQL 93
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS-PMLQVLDFSHNNISGM 310
F R S L LD+ N + P+LC PML+VL+ HN +S +
Sbjct: 45 FTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQL 88
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 24/103 (23%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPI-- 164
+ A+H L H+S L L+ N +Q +P +F +TSL +L ++ S S PI
Sbjct: 68 DKAWHGLHHLSN----LILTGNPIQSFSPG-SFSGLTSLENLVAVETKLA-SLESFPIGQ 121
Query: 165 --TLVR-------------PKYAFSNVTSLMDLDLSKNQITGI 192
TL + P Y FSN+T+L+ +DLS N I I
Sbjct: 122 LITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 163
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS-PMLQVLDFSHNNISGM 310
F R S L LD+ N + P+LC PML+VL+ HN +S +
Sbjct: 55 FTRYSQLTSLDVGFNTI--------SKLEPELCQKLPMLKVLNLQHNELSQL 98
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 24/103 (23%)
Query: 107 NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPI-- 164
+ A+H L H+S L L+ N +Q +P +F +TSL +L ++ S S PI
Sbjct: 73 DKAWHGLHHLSN----LILTGNPIQSFSPG-SFSGLTSLENLVAVETKLA-SLESFPIGQ 126
Query: 165 --TLVR-------------PKYAFSNVTSLMDLDLSKNQITGI 192
TL + P Y FSN+T+L+ +DLS N I I
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLN 222
IT + P F +T L LDL NQ+T +P F + L L ++DN L + F N
Sbjct: 50 ITKLEPG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDN 108
Query: 223 FSAGCAKKSLQSFMLQNN 240
KSL L NN
Sbjct: 109 L------KSLTHIWLLNN 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,762,470
Number of Sequences: 62578
Number of extensions: 490124
Number of successful extensions: 1440
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 211
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)