Query 047429
Match_columns 466
No_of_seqs 354 out of 2946
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 10:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-38 6.4E-43 346.9 24.1 395 10-431 137-601 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-36 2.6E-41 334.2 24.6 384 8-420 113-566 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.4E-35 1.2E-39 278.2 7.7 364 15-458 80-469 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.2E-33 4.9E-38 267.2 5.7 334 15-419 54-409 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.6E-31 5.7E-36 242.9 -5.6 347 6-414 84-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 3.4E-30 7.5E-35 247.3 -2.2 136 8-155 50-186 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 6.1E-30 1.3E-34 245.7 -2.4 271 11-329 5-301 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 9.4E-29 2E-33 226.3 -3.7 245 10-308 65-310 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.6E-25 3.4E-30 224.5 1.9 282 8-325 40-413 (1081)
10 PRK15387 E3 ubiquitin-protein 99.9 7.7E-22 1.7E-26 203.6 17.4 218 13-313 201-419 (788)
11 KOG0618 Serine/threonine phosp 99.9 7.8E-23 1.7E-27 205.4 1.1 354 14-419 22-424 (1081)
12 PLN03210 Resistant to P. syrin 99.8 6.5E-20 1.4E-24 202.8 21.7 275 5-328 550-834 (1153)
13 KOG4237 Extracellular matrix p 99.8 1.2E-22 2.5E-27 186.2 -2.8 267 14-308 68-399 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 1.5E-19 3.3E-24 186.7 16.5 245 13-387 222-467 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 3E-24 188.1 14.6 207 39-315 179-386 (754)
16 PLN03210 Resistant to P. syrin 99.8 3.6E-18 7.9E-23 189.0 21.5 317 8-412 583-904 (1153)
17 PRK15370 E3 ubiquitin-protein 99.8 2.9E-19 6.2E-24 185.7 11.7 232 13-318 178-410 (754)
18 KOG4237 Extracellular matrix p 99.8 1.9E-21 4.2E-26 178.3 -4.0 294 66-457 68-375 (498)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.8E-19 4E-24 173.3 4.2 276 17-314 2-297 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.8E-19 8.3E-24 171.0 1.8 239 42-308 2-263 (319)
21 KOG0617 Ras suppressor protein 99.6 1E-17 2.2E-22 137.1 -4.0 121 176-321 32-152 (264)
22 KOG0617 Ras suppressor protein 99.6 2E-17 4.3E-22 135.4 -2.8 162 118-319 33-196 (264)
23 KOG1909 Ran GTPase-activating 99.4 4.2E-14 9E-19 128.7 -0.5 224 9-243 26-283 (382)
24 KOG3207 Beta-tubulin folding c 99.3 8.1E-13 1.8E-17 123.7 4.3 214 10-243 118-339 (505)
25 KOG0532 Leucine-rich repeat (L 99.2 1.5E-13 3.3E-18 132.4 -5.9 193 64-305 74-270 (722)
26 KOG3207 Beta-tubulin folding c 99.2 2.8E-12 6.2E-17 120.1 0.7 232 18-276 98-338 (505)
27 COG4886 Leucine-rich repeat (L 99.2 1.7E-11 3.8E-16 121.4 6.2 170 97-308 97-268 (394)
28 KOG0532 Leucine-rich repeat (L 99.2 2E-12 4.3E-17 124.8 -0.7 199 70-316 55-254 (722)
29 PF14580 LRR_9: Leucine-rich r 99.2 1.7E-11 3.7E-16 104.9 4.3 133 3-149 9-146 (175)
30 PF14580 LRR_9: Leucine-rich r 99.2 2.4E-11 5.2E-16 103.9 4.1 129 34-207 15-147 (175)
31 KOG1909 Ran GTPase-activating 99.1 6.4E-13 1.4E-17 121.1 -6.1 259 92-414 29-311 (382)
32 COG4886 Leucine-rich repeat (L 99.1 9.8E-11 2.1E-15 116.0 8.4 204 7-245 84-292 (394)
33 KOG1259 Nischarin, modulator o 99.0 9.1E-11 2E-15 105.0 2.3 137 196-419 280-416 (490)
34 PLN03150 hypothetical protein; 99.0 1.4E-09 2.9E-14 113.2 9.0 114 232-419 420-533 (623)
35 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.7E-15 104.1 0.6 107 174-308 281-387 (490)
36 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.5E-15 114.8 -0.8 250 12-314 71-324 (414)
37 KOG0531 Protein phosphatase 1, 98.9 4.3E-10 9.4E-15 111.8 1.7 225 7-276 89-317 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.8 6.8E-09 1.5E-13 110.6 7.0 124 13-149 523-648 (889)
39 PLN03150 hypothetical protein; 98.8 3.1E-08 6.8E-13 103.1 9.8 105 39-152 419-525 (623)
40 PF13855 LRR_8: Leucine rich r 98.7 8.7E-09 1.9E-13 72.4 2.0 61 13-77 1-61 (61)
41 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3E-13 71.4 2.9 61 65-130 1-61 (61)
42 KOG2120 SCF ubiquitin ligase, 98.6 6.4E-10 1.4E-14 99.6 -5.8 170 118-317 185-358 (419)
43 COG5238 RNA1 Ran GTPase-activa 98.6 2.1E-08 4.6E-13 88.8 2.5 222 11-244 28-286 (388)
44 KOG2982 Uncharacterized conser 98.6 1.2E-08 2.6E-13 91.5 0.4 110 39-152 46-156 (418)
45 KOG4658 Apoptotic ATPase [Sign 98.5 7.7E-08 1.7E-12 102.7 5.6 106 13-129 545-653 (889)
46 KOG2120 SCF ubiquitin ligase, 98.5 1E-08 2.2E-13 92.0 -1.7 110 14-129 186-297 (419)
47 KOG1859 Leucine-rich repeat pr 98.3 8.9E-09 1.9E-13 102.7 -7.8 125 66-213 165-292 (1096)
48 KOG2982 Uncharacterized conser 98.3 7.3E-07 1.6E-11 80.3 4.7 112 14-131 46-159 (418)
49 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.7E-11 56.4 2.4 37 365-414 1-37 (44)
50 KOG1859 Leucine-rich repeat pr 98.1 2.2E-07 4.7E-12 93.0 -3.3 124 14-152 165-289 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 7.9E-11 54.2 3.2 38 177-214 1-38 (44)
52 KOG4579 Leucine-rich repeat (L 98.1 5.7E-07 1.2E-11 71.8 -0.7 35 286-321 91-125 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.0 1E-06 2.2E-11 78.4 0.3 242 32-310 24-287 (388)
54 KOG4579 Leucine-rich repeat (L 98.0 1.2E-06 2.6E-11 69.9 -0.7 106 15-131 29-136 (177)
55 KOG1644 U2-associated snRNP A' 97.9 1.2E-05 2.5E-10 68.8 4.4 63 64-131 63-126 (233)
56 KOG1644 U2-associated snRNP A' 97.8 2.7E-05 5.8E-10 66.6 5.3 110 177-306 42-151 (233)
57 KOG3665 ZYG-1-like serine/thre 97.8 5E-06 1.1E-10 86.8 0.6 187 14-218 61-268 (699)
58 PRK15386 type III secretion pr 97.8 6.2E-05 1.3E-09 72.7 7.3 32 176-210 51-82 (426)
59 PRK15386 type III secretion pr 97.6 0.00035 7.5E-09 67.7 9.9 18 36-53 50-67 (426)
60 KOG3665 ZYG-1-like serine/thre 97.6 6.7E-05 1.5E-09 78.5 4.6 135 13-156 122-264 (699)
61 KOG4341 F-box protein containi 97.4 1.3E-05 2.9E-10 75.6 -3.2 282 8-323 159-456 (483)
62 KOG4341 F-box protein containi 97.3 1.8E-05 3.8E-10 74.8 -2.7 277 13-325 138-432 (483)
63 KOG2123 Uncharacterized conser 97.3 3.1E-05 6.6E-10 69.5 -2.0 102 36-149 17-123 (388)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00018 4E-09 64.2 2.3 108 34-149 39-149 (260)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0011 2.5E-08 54.0 6.2 124 6-145 5-128 (129)
66 KOG2123 Uncharacterized conser 96.8 8.9E-05 1.9E-09 66.6 -3.3 102 11-124 17-123 (388)
67 KOG2739 Leucine-rich acidic nu 96.7 0.00076 1.6E-08 60.3 1.8 111 11-128 41-153 (260)
68 PF13306 LRR_5: Leucine rich r 96.6 0.009 1.9E-07 48.6 7.4 121 171-321 6-128 (129)
69 KOG4308 LRR-containing protein 96.3 2E-05 4.3E-10 78.8 -11.9 196 95-309 89-304 (478)
70 KOG4308 LRR-containing protein 96.2 8.1E-05 1.8E-09 74.5 -8.6 191 40-243 89-303 (478)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0047 1E-07 33.0 0.2 21 296-317 1-21 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0079 1.7E-07 32.1 0.7 18 179-196 2-19 (22)
73 KOG1947 Leucine rich repeat pr 94.9 0.019 4.1E-07 58.3 3.2 114 8-127 209-330 (482)
74 PF13504 LRR_7: Leucine rich r 94.8 0.015 3.2E-07 28.8 1.0 13 402-414 2-14 (17)
75 KOG3864 Uncharacterized conser 94.0 0.015 3.2E-07 50.2 -0.0 34 15-49 103-136 (221)
76 smart00370 LRR Leucine-rich re 92.1 0.11 2.3E-06 28.9 1.6 20 400-420 1-20 (26)
77 smart00369 LRR_TYP Leucine-ric 92.1 0.11 2.3E-06 28.9 1.6 20 400-420 1-20 (26)
78 KOG1947 Leucine rich repeat pr 92.1 0.14 3E-06 52.0 3.7 116 12-130 187-307 (482)
79 smart00370 LRR Leucine-rich re 91.3 0.21 4.5E-06 27.7 2.3 23 294-316 1-23 (26)
80 smart00369 LRR_TYP Leucine-ric 91.3 0.21 4.5E-06 27.7 2.3 23 294-316 1-23 (26)
81 PF13516 LRR_6: Leucine Rich r 89.9 0.15 3.2E-06 27.7 0.8 18 13-30 2-19 (24)
82 PF13516 LRR_6: Leucine Rich r 89.8 0.083 1.8E-06 28.7 -0.3 22 294-315 1-22 (24)
83 KOG0473 Leucine-rich repeat pr 88.0 0.033 7.1E-07 49.2 -4.0 54 260-322 38-91 (326)
84 KOG3864 Uncharacterized conser 87.5 0.16 3.4E-06 44.1 -0.2 77 67-148 103-181 (221)
85 smart00364 LRR_BAC Leucine-ric 86.9 0.42 9E-06 26.5 1.3 19 401-420 2-20 (26)
86 KOG4242 Predicted myosin-I-bin 84.2 11 0.00025 37.3 10.4 67 64-136 164-232 (553)
87 KOG0473 Leucine-rich repeat pr 83.5 0.059 1.3E-06 47.7 -4.7 82 118-213 42-124 (326)
88 KOG3763 mRNA export factor TAP 80.3 1.4 3E-05 44.3 2.8 37 38-75 218-254 (585)
89 smart00368 LRR_RI Leucine rich 75.7 2.2 4.7E-05 24.2 1.6 17 13-29 2-18 (28)
90 smart00365 LRR_SD22 Leucine-ri 75.0 2.7 5.7E-05 23.4 1.8 16 65-80 2-17 (26)
91 KOG4242 Predicted myosin-I-bin 58.4 60 0.0013 32.5 8.4 247 39-308 215-481 (553)
92 smart00367 LRR_CC Leucine-rich 52.4 11 0.00023 20.7 1.5 11 13-23 2-12 (26)
93 KOG3763 mRNA export factor TAP 47.6 11 0.00023 38.2 1.6 70 60-133 213-285 (585)
94 TIGR00864 PCC polycystin catio 36.8 25 0.00055 42.8 2.7 32 371-414 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-38 Score=346.87 Aligned_cols=395 Identities=27% Similarity=0.338 Sum_probs=237.3
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
+.+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+.. +..+.. +++|++|++++|.+.+..+ ..+..
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~-l~~L~~L~L~~n~l~~~~p--~~l~~ 210 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKI--PNSLTN-LTSLEFLTLASNQLVGQIP--RELGQ 210 (968)
T ss_pred cccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccC--Chhhhh-CcCCCeeeccCCCCcCcCC--hHHcC
Confidence 456777777777777776666 66777777777777777765442 445555 7777777777777766555 45556
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+..|. .++++++|+.|+ +.|.+.+. +|
T Consensus 211 --l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~----~p----- 277 (968)
T PLN00113 211 --MKSLKWIYLGYNNLSGEIPYEIGGL-TSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGP----IP----- 277 (968)
T ss_pred --cCCccEEECcCCccCCcCChhHhcC-CCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeecc----Cc-----
Confidence 6777777777777776677777776 7777777777777666666 677777777777 66666554 44
Q ss_pred ccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++.+|
T Consensus 278 --~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l------~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 278 --PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL------PRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred --hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC------CCCCEEECcCCCCcCcCC
Confidence 445555555555555555554 44455555555555555555555444443333 334444444444443322
Q ss_pred CC--------------cccccccCcccCCCCCCcEEeCCCCee-----------------eeecccccccCCCCCCCCCC
Q 047429 248 GV--------------TELDGTFPKQFCRPSSLVELDLESNQL-----------------WLRFNHINGSATPKLCSSPM 296 (466)
Q Consensus 248 ~~--------------~~l~~~lp~~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~~~~~l~~ 296 (466)
.. ..+.+.+|..+..+++|+.|++++|.+ ++++|++++..|..+..++.
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 10 011223333333334444444443332 23335556667777777777
Q ss_pred ccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeee-----------eccCCC-------------Ccccccceee
Q 047429 297 LQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRI-----------QLIDDP-------------EFDYQDRALL 351 (466)
Q Consensus 297 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~-----------~~~~~~-------------~~~~~~~~~~ 351 (466)
|+.|++++|.+++.+|..+..+++|+.|+++++- .+... .+..+. .+.......+
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 7777777777777777777777777777644332 11100 000000 0000111111
Q ss_pred eeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh------------ccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 352 VWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
.+.+..+..+..+++|++|+|++|.++|.+|..++.+ +.+.+|..+.+++.|+.|++++|+++|.+|+
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 2223344455667788888888888888888777654 6778888888888888888888888888888
Q ss_pred CCCccccccccc
Q 047429 420 SIPLQTFEASAY 431 (466)
Q Consensus 420 ~~~~~~~~~~~~ 431 (466)
..++.++....+
T Consensus 590 ~~~~~~~~~~~~ 601 (968)
T PLN00113 590 TGAFLAINASAV 601 (968)
T ss_pred cchhcccChhhh
Confidence 766665554443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-36 Score=334.16 Aligned_cols=384 Identities=28% Similarity=0.373 Sum_probs=305.7
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
.+..+++|++|++++|.+++..| ...+++|++|+|++|.+.+.. +..+.. +++|++|++++|.+.+..+ ..+
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~--p~~~~~-l~~L~~L~L~~n~l~~~~p--~~~ 184 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEI--PNDIGS-FSSLKVLDLGGNVLVGKIP--NSL 184 (968)
T ss_pred HhccCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccC--ChHHhc-CCCCCEEECccCcccccCC--hhh
Confidence 45589999999999999987766 256899999999999997653 556666 9999999999999987766 567
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccc
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITL 166 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~ 166 (466)
.. +++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+..|. .++++++|+.|+ +.|.+++. +|
T Consensus 185 ~~--l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~----~p--- 253 (968)
T PLN00113 185 TN--LTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGP----IP--- 253 (968)
T ss_pred hh--CcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCCh-hHhcCCCCCEEECcCceeccc----cC---
Confidence 77 9999999999999999999999999 9999999999999999998 999999999999 99998876 66
Q ss_pred cCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 167 VRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 167 ~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
..+..+++|++|++++|.+.+ +|..+.++++|++|++++|.+.+..|..+..+ ++|+.|++++|.+++.
T Consensus 254 ----~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 254 ----SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL------QNLEILHLFSNNFTGK 323 (968)
T ss_pred ----hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC------CCCcEEECCCCccCCc
Confidence 789999999999999999987 88899999999999999999999888877665 6899999999999876
Q ss_pred CCCC--------------cccccccCcccCCCCCCcEEeCCCCee-----------------eeecccccccCCCCCCCC
Q 047429 246 LPGV--------------TELDGTFPKQFCRPSSLVELDLESNQL-----------------WLRFNHINGSATPKLCSS 294 (466)
Q Consensus 246 ~~~~--------------~~l~~~lp~~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~~~~~l 294 (466)
.|.. ..+.+.+|..+..+++|+.|++++|++ ++++|.+.+.+|..+..+
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 6542 245567788888888899999988875 356677777777777788
Q ss_pred CCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeeee-ccCCCCccc-----------------------ccce
Q 047429 295 PMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQ-LIDDPEFDY-----------------------QDRA 349 (466)
Q Consensus 295 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~-~~~~~~~~~-----------------------~~~~ 349 (466)
++|+.|++++|.+++..|..|.+++.|+.++++++. .+.... ....+.+.. ....
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls 483 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECc
Confidence 888888888888888888888888888887754432 211100 000000000 0000
Q ss_pred eeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh------------ccCCCcccccCCCCCCeeeccCCcCcccC
Q 047429 350 LLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKI 417 (466)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 417 (466)
.+.+.+..+..+..++.|+.|+|++|++.+.+|..++.+ +.+.+|..+.++++|+.|+|++|+++|.+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 111223334445677788888888888888888877654 67788888999999999999999999888
Q ss_pred CCC
Q 047429 418 PSS 420 (466)
Q Consensus 418 p~~ 420 (466)
|..
T Consensus 564 p~~ 566 (968)
T PLN00113 564 PKN 566 (968)
T ss_pred Chh
Confidence 875
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-35 Score=278.25 Aligned_cols=364 Identities=22% Similarity=0.314 Sum_probs=191.0
Q ss_pred CcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSS 94 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~ 94 (466)
.+.||+++|++....+ ..|.++++|+.+++.+|.++.+ |..... ..+|+.|+|.+|.|+.+.. ..+.. ++.
T Consensus 80 t~~LdlsnNkl~~id~-~~f~nl~nLq~v~l~~N~Lt~I---P~f~~~-sghl~~L~L~~N~I~sv~s--e~L~~--l~a 150 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDF-EFFYNLPNLQEVNLNKNELTRI---PRFGHE-SGHLEKLDLRHNLISSVTS--EELSA--LPA 150 (873)
T ss_pred eeeeeccccccccCcH-HHHhcCCcceeeeeccchhhhc---cccccc-ccceeEEeeeccccccccH--HHHHh--Hhh
Confidence 3456666666666666 6666666666666666666655 211111 3345555555555444433 33333 444
Q ss_pred ccEEEcC------------------------CCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-
Q 047429 95 LTHLHLS------------------------LCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT- 149 (466)
Q Consensus 95 L~~L~Ls------------------------~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~- 149 (466)
|+.|||+ +|+|+....+.|..+ .+|.+|.|+.|+++ .+|...|.++++|+.|+
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCccc-ccCHHHhhhcchhhhhhc
Confidence 4445554 444444444444444 44444444444444 23333444444454444
Q ss_pred cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhcccccc
Q 047429 150 SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228 (466)
Q Consensus 150 ~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 228 (466)
..|.+..... ..|.++++|+.|.|..|.+..+. ..|..+.++++|+|+.|+++..-.++..++
T Consensus 229 nrN~irive~-----------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL----- 292 (873)
T KOG4194|consen 229 NRNRIRIVEG-----------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL----- 292 (873)
T ss_pred cccceeeehh-----------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-----
Confidence 4444433210 23444444445555555444432 234444455555555555444333333333
Q ss_pred ccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 229 ~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.+|+.|++++|.|.... ++++..+++|+.|+|+. |+++...++.|..++.|+.|+|+.|.++
T Consensus 293 -t~L~~L~lS~NaI~rih----------~d~WsftqkL~~LdLs~-------N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 293 -TSLEQLDLSYNAIQRIH----------IDSWSFTQKLKELDLSS-------NRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred -chhhhhccchhhhheee----------cchhhhcccceeEeccc-------cccccCChhHHHHHHHhhhhcccccchH
Confidence 33555555555444111 23344455555555555 3334444455556666666666666666
Q ss_pred CCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 309 GMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 309 ~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
.+-..+|..+++|+.|++.++-..+.+. . ....+.+++.|+.|++.+|+++ .||.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IE------------------D-aa~~f~gl~~LrkL~l~gNqlk-~I~k----- 409 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIE------------------D-AAVAFNGLPSLRKLRLTGNQLK-SIPK----- 409 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEe------------------c-chhhhccchhhhheeecCceee-ecch-----
Confidence 5555566666666666644433222111 1 1223456889999999999998 5543
Q ss_pred ccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHHHH
Q 047429 389 LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVKMA 458 (466)
Q Consensus 389 ~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (466)
.+|.+++.|++|||.+|.|...-|++..--.++...+.+ .-|.|.|...+ +..|+...+.
T Consensus 410 ------rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS---ssflCDCql~W-l~qWl~~~~l 469 (873)
T KOG4194|consen 410 ------RAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS---SSFLCDCQLKW-LAQWLYRRKL 469 (873)
T ss_pred ------hhhccCcccceecCCCCcceeecccccccchhhhhhhcc---cceEEeccHHH-HHHHHHhccc
Confidence 368999999999999999985555442211333333332 33677787764 8888876544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=2.2e-33 Score=267.24 Aligned_cols=334 Identities=25% Similarity=0.314 Sum_probs=254.0
Q ss_pred CcEEeCCCccccccchHHHhhcC--CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYH--NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
-+.||++++.+..... ..+.++ +.-+.|++++|.++.+. +..+.. +++|+.+++..|.++.++.. ... .
T Consensus 54 ~~lldcs~~~lea~~~-~~l~g~lp~~t~~LdlsnNkl~~id--~~~f~n-l~nLq~v~l~~N~Lt~IP~f---~~~--s 124 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDK-SRLKGFLPSQTQTLDLSNNKLSHID--FEFFYN-LPNLQEVNLNKNELTRIPRF---GHE--S 124 (873)
T ss_pred ceeeecCccccccccc-cccCCcCccceeeeeccccccccCc--HHHHhc-CCcceeeeeccchhhhcccc---ccc--c
Confidence 3578999998876543 333333 33567999999999884 555555 99999999999999987652 222 5
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
.+|+.|+|.+|.|+.+..+.+..+ +.|+.||||.|.++. ++..+|..-.++++|+ +.|.|+.... +
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l-~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~-----------~ 191 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSAL-PALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLET-----------G 191 (873)
T ss_pred cceeEEeeeccccccccHHHHHhH-hhhhhhhhhhchhhc-ccCCCCCCCCCceEEeecccccccccc-----------c
Confidence 679999999999998888888888 899999999999984 4443777778899999 9999988733 5
Q ss_pred cccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
.|..+.+|..|.|++|.++.+|. .|.++++|+.|+|..|+|.-...-.|..+ ++|+.|.|..|.+.
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL------~Sl~nlklqrN~I~------- 258 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL------PSLQNLKLQRNDIS------- 258 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc------hhhhhhhhhhcCcc-------
Confidence 67778888888899999888775 67778889999988888864433344444 56777777777776
Q ss_pred ccccccCc-ccCCCCCCcEEeCCCCee-----------------eeecccccccCCCCCCCCCCccEEEccCCCCCCCch
Q 047429 251 ELDGTFPK-QFCRPSSLVELDLESNQL-----------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312 (466)
Q Consensus 251 ~l~~~lp~-~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 312 (466)
.+.+ .|..+.++++|+|..|++ +++.|.|....++.+..+++|++|||++|+|+...+
T Consensus 259 ----kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 259 ----KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ----cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 2222 255666666666666655 355577777788888888999999999999998888
Q ss_pred hhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCC
Q 047429 313 TCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGK 392 (466)
Q Consensus 313 ~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ 392 (466)
..|..+..|+.|+++-+-. .++....+..+++|+.|||++|.++..|.+.
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi----------------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-------- 384 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSI----------------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-------- 384 (873)
T ss_pred hHHHHHHHhhhhcccccch----------------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------
Confidence 8999999998888433211 2334445577899999999999999776543
Q ss_pred CcccccCCCCCCeeeccCCcCcccCCC
Q 047429 393 IPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 393 ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
...|.++++|+.|++.+|++. .||.
T Consensus 385 -a~~f~gl~~LrkL~l~gNqlk-~I~k 409 (873)
T KOG4194|consen 385 -AVAFNGLPSLRKLRLTGNQLK-SIPK 409 (873)
T ss_pred -hhhhccchhhhheeecCceee-ecch
Confidence 224889999999999999998 7775
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2.6e-31 Score=242.91 Aligned_cols=347 Identities=24% Similarity=0.281 Sum_probs=218.8
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+.+++.+..++.++.++|++.. .| ..+..+.+|+.|+.++|.+... +.+++. +-.|..++..+|++...++
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~-lp-~~i~s~~~l~~l~~s~n~~~el---~~~i~~-~~~l~dl~~~~N~i~slp~--- 154 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSE-LP-EQIGSLISLVKLDCSSNELKEL---PDSIGR-LLDLEDLDATNNQISSLPE--- 154 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhh-cc-HHHhhhhhhhhhhccccceeec---CchHHH-HhhhhhhhccccccccCch---
Confidence 4445555555555555555542 23 4455556666666666666555 445555 6666666666666666554
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
.++. +.++..+++.+|.++...|..+. + +.|++||...|-+. .+|. .++.+.+|..|+ ..|++... |
T Consensus 155 ~~~~--~~~l~~l~~~~n~l~~l~~~~i~-m-~~L~~ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~l-----P- 222 (565)
T KOG0472|consen 155 DMVN--LSKLSKLDLEGNKLKALPENHIA-M-KRLKHLDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRFL-----P- 222 (565)
T ss_pred HHHH--HHHHHHhhccccchhhCCHHHHH-H-HHHHhcccchhhhh-cCCh-hhcchhhhHHHHhhhcccccC-----C-
Confidence 3444 56677777777777655554444 5 77888888877776 6676 778888888888 77777653 3
Q ss_pred cccCccccccCCCccCEEecCCCcCCCCCcc-cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITGIPKS-FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
.|.++..|++|.++.|+|+.+|+. ...++++..||++.|+++. .|+...-+ .+|.+||+++|.|+
T Consensus 223 -------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clL------rsL~rLDlSNN~is 288 (565)
T KOG0472|consen 223 -------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLL------RSLERLDLSNNDIS 288 (565)
T ss_pred -------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHh------hhhhhhcccCCccc
Confidence 566666677777777777666653 3366777777777777763 33333333 45677777777776
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCee-----------------------------------------------
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------------------------------------------- 276 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------------------------------------------- 276 (466)
.+|..++++ +|+.|.+.+|.+
T Consensus 289 -----------~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 289 -----------SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred -----------cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 334444444 444444444443
Q ss_pred -------------------------------------------------------------eeecccccccCCCCCCCCC
Q 047429 277 -------------------------------------------------------------WLRFNHINGSATPKLCSSP 295 (466)
Q Consensus 277 -------------------------------------------------------------~l~~n~~~~~~~~~~~~l~ 295 (466)
.+++|.+ +-+|..++.++
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~ 435 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQ 435 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhh
Confidence 1444444 46677788888
Q ss_pred CccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc-eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCC
Q 047429 296 MLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV-IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSD 374 (466)
Q Consensus 296 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 374 (466)
+|..|+|++|.+. .+|..++.+..|+.++++.+ |...+-....-............+..+++.-...|++|..|||.+
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 8888888888887 67888888888888885443 222110000000000000001122334445567899999999999
Q ss_pred CcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 375 NNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 375 N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
|.+. .||+.++++++|++|++++|.|.
T Consensus 515 Ndlq-------------~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-------------QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-------------hCChhhccccceeEEEecCCccC
Confidence 9998 77888999999999999999997
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.4e-30 Score=247.35 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=65.2
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
.++.+.+|++|.+++|++.... ..+..++.||.+++.+|++.... +|.+++. +..|++||||+|++.+.+. .+
T Consensus 50 EL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsG-iP~diF~-l~dLt~lDLShNqL~EvP~---~L 122 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSG-IPTDIFR-LKDLTILDLSHNQLREVPT---NL 122 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCC-CCchhcc-cccceeeecchhhhhhcch---hh
Confidence 3444445555555555544221 33444555555555555443321 1445555 5555555555555554433 22
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccc
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYIT 155 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~ 155 (466)
.. .+++-+|+|++|+|..+.-..|.++ ..|-.||||+|++. ..|. .+..+..|++|. ++|.+.
T Consensus 123 E~--AKn~iVLNLS~N~IetIPn~lfinL-tDLLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 123 EY--AKNSIVLNLSYNNIETIPNSLFINL-TDLLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hh--hcCcEEEEcccCccccCCchHHHhh-HhHhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhh
Confidence 22 3455555555555554333334444 55555555555554 3344 445555555555 544443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=6.1e-30 Score=245.67 Aligned_cols=271 Identities=21% Similarity=0.283 Sum_probs=144.6
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCc--------
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINY-------- 82 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------- 82 (466)
-++-++-.|+++|.++|.-.+.....+++++-|.|...++..+ |..+.. +.+|++|.+++|++..+..
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~v---PeEL~~-lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQV---PEELSR-LQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhC---hHHHHH-HhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3455555666666665433325555555555555555555444 444444 5555555555554443322
Q ss_pred ---------------cccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccc
Q 047429 83 ---------------RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147 (466)
Q Consensus 83 ---------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 147 (466)
. ..+.. +..|+.|+|++|++. ..|..+... +++-+|+||+|+|. .+|...|.++..|-.
T Consensus 81 Rsv~~R~N~LKnsGiP-~diF~--l~dLt~lDLShNqL~-EvP~~LE~A-Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIP-TDIFR--LKDLTILDLSHNQLR-EVPTNLEYA-KNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred HHHhhhccccccCCCC-chhcc--cccceeeecchhhhh-hcchhhhhh-cCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 1 22333 444555555555544 334444444 44555555555544 333334444444555
Q ss_pred cc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCC-Cccchhhhhcc
Q 047429 148 LT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILT-AKLPELFLNFS 224 (466)
Q Consensus 148 L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~ 224 (466)
|+ +.|.+.. +| ..+..+..|+.|.|++|.+.. --..+..+++|+.|.+++.+-+ ..+|....++
T Consensus 155 LDLS~NrLe~-----LP-------PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l- 221 (1255)
T KOG0444|consen 155 LDLSNNRLEM-----LP-------PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL- 221 (1255)
T ss_pred hccccchhhh-----cC-------HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-
Confidence 55 4444443 22 234444455555555554433 1122333444445555443322 1233333333
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccC
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSH 304 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 304 (466)
.+|..+|+|.|.+. .+|+.+.++++|+.|+|++|+| ..+.-......+|+.|++|.
T Consensus 222 -----~NL~dvDlS~N~Lp-----------~vPecly~l~~LrrLNLS~N~i--------teL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 222 -----HNLRDVDLSENNLP-----------IVPECLYKLRNLRRLNLSGNKI--------TELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred -----hhhhhccccccCCC-----------cchHHHhhhhhhheeccCcCce--------eeeeccHHHHhhhhhhcccc
Confidence 46888888988887 8888899999999999999877 23333344456677777777
Q ss_pred CCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 305 NNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 305 N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
|+++ .+|.++..+++|+.|...++
T Consensus 278 NQLt-~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred chhc-cchHHHhhhHHHHHHHhccC
Confidence 7776 66777777777777664443
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=9.4e-29 Score=226.26 Aligned_cols=245 Identities=27% Similarity=0.303 Sum_probs=143.5
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
.++..+.+|++++|++... | ..++.+..+..|+.++|+++.. |..+.. +.+|+.++++.|.+...++ .++.
T Consensus 65 ~nL~~l~vl~~~~n~l~~l-p-~aig~l~~l~~l~vs~n~ls~l---p~~i~s-~~~l~~l~~s~n~~~el~~---~i~~ 135 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQL-P-AAIGELEALKSLNVSHNKLSEL---PEQIGS-LISLVKLDCSSNELKELPD---SIGR 135 (565)
T ss_pred hcccceeEEEeccchhhhC-C-HHHHHHHHHHHhhcccchHhhc---cHHHhh-hhhhhhhhccccceeecCc---hHHH
Confidence 3444555555555555422 2 3445555555555555555554 445544 5555555555555555443 3344
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
+..++.++..+|++.. .|+.+..+ .++..|++.+|.+....|. .+. ++.|++|+ ..|-++. +|
T Consensus 136 --~~~l~dl~~~~N~i~s-lp~~~~~~-~~l~~l~~~~n~l~~l~~~-~i~-m~~L~~ld~~~N~L~t-----lP----- 199 (565)
T KOG0472|consen 136 --LLDLEDLDATNNQISS-LPEDMVNL-SKLSKLDLEGNKLKALPEN-HIA-MKRLKHLDCNSNLLET-----LP----- 199 (565)
T ss_pred --Hhhhhhhhcccccccc-CchHHHHH-HHHHHhhccccchhhCCHH-HHH-HHHHHhcccchhhhhc-----CC-----
Confidence 4555555555565553 34444444 5556666666666533332 333 66666666 4444443 44
Q ss_pred ccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..++.+.+|.-|++..|++..+| .|.++..|+.|.++.|++. ..|....+.+ +++.+||+..|+++
T Consensus 200 --~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L-----~~l~vLDLRdNklk----- 265 (565)
T KOG0472|consen 200 --PELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHL-----NSLLVLDLRDNKLK----- 265 (565)
T ss_pred --hhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhccc-----ccceeeeccccccc-----
Confidence 45666666666666666666666 5666666666666666665 3333333221 46777788888777
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
++|+.++.+++|+.||+++|.| ...|..++++ +|+.|-+.+|.+.
T Consensus 266 ------e~Pde~clLrsL~rLDlSNN~i--------s~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 266 ------EVPDEICLLRSLERLDLSNNDI--------SSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ------cCchHHHHhhhhhhhcccCCcc--------ccCCcccccc-eeeehhhcCCchH
Confidence 7777777777788888877655 4677777777 7788878777764
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-25 Score=224.52 Aligned_cols=282 Identities=24% Similarity=0.297 Sum_probs=159.6
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
++.+.-+|+.||+++|.+... | ..+..+.+|+.|+++.|.|... +..... +.+|+++.|.+|.+...+. .+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~f-p-~~it~l~~L~~ln~s~n~i~~v---p~s~~~-~~~l~~lnL~~n~l~~lP~---~~ 110 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSF-P-IQITLLSHLRQLNLSRNYIRSV---PSSCSN-MRNLQYLNLKNNRLQSLPA---SI 110 (1081)
T ss_pred HhhheeeeEEeeccccccccC-C-chhhhHHHHhhcccchhhHhhC---chhhhh-hhcchhheeccchhhcCch---hH
Confidence 344444566777776665532 2 3455555555666665555554 333333 4555555555555444332 33
Q ss_pred ccCCCCCccEEEcCCCCCC------------------------------------------chhhhhhhcccCCCcEEEc
Q 047429 88 VNSSSSSLTHLHLSLCGLS------------------------------------------NSAYHCLSHISKSLVYLDL 125 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~------------------------------------------~~~~~~l~~l~~~L~~L~L 125 (466)
.. +++|++|++++|.+. +.++..+..+ .. .|+|
T Consensus 111 ~~--lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l-~~--~ldL 185 (1081)
T KOG0618|consen 111 SE--LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL-TH--QLDL 185 (1081)
T ss_pred Hh--hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh-he--eeec
Confidence 33 445555555555443 2222222222 22 3677
Q ss_pred cCCccccCCChhhhhcCCcccccc-cccccccccccCCCcccc----Cc---cccccCCCccCEEecCCCcCCCCCcccC
Q 047429 126 SNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLV----RP---KYAFSNVTSLMDLDLSKNQITGIPKSFG 197 (466)
Q Consensus 126 s~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~----~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~l~ 197 (466)
..|.+. .. .+..+.+|+.+. ..|.+.....+....... .+ ...-..-.+|++++++.|.++.+|+++.
T Consensus 186 r~N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~ 261 (1081)
T KOG0618|consen 186 RYNEME-VL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIG 261 (1081)
T ss_pred ccchhh-hh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHH
Confidence 776665 11 334455555555 555444332211100000 00 0001123478888888888888888888
Q ss_pred CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee-
Q 047429 198 DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL- 276 (466)
Q Consensus 198 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l- 276 (466)
.+.+|+.++..+|.++. .|...... .+|+.|.+.+|.+. .+|......++|++|+|..|+|
T Consensus 262 ~~~nle~l~~n~N~l~~-lp~ri~~~------~~L~~l~~~~nel~-----------yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLVA-LPLRISRI------TSLVSLSAAYNELE-----------YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hcccceEecccchhHHh-hHHHHhhh------hhHHHHHhhhhhhh-----------hCCCcccccceeeeeeehhcccc
Confidence 88899999998888864 33322222 34666666666666 5555566666777777776665
Q ss_pred -----------------------------------------eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhh
Q 047429 277 -----------------------------------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 277 -----------------------------------------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 315 (466)
++.+|+++...-+.+.+.++|+.|+|++|++.......+
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence 366777777777777777888888888888875555567
Q ss_pred hhhhhhhhcC
Q 047429 316 NNLSAMVQNG 325 (466)
Q Consensus 316 ~~l~~L~~l~ 325 (466)
.++..|+.|+
T Consensus 404 ~kle~LeeL~ 413 (1081)
T KOG0618|consen 404 RKLEELEELN 413 (1081)
T ss_pred hchHHhHHHh
Confidence 7777776665
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=7.7e-22 Score=203.62 Aligned_cols=218 Identities=26% Similarity=0.309 Sum_probs=155.6
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+-..|+++++.++.. | ..+. .+|+.|++++|+++.++ . ..++|++|++++|.++.++. . .
T Consensus 201 ~~~~~LdLs~~~LtsL-P-~~l~--~~L~~L~L~~N~Lt~LP---~----lp~~Lk~LdLs~N~LtsLP~------l--p 261 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLTSLP---A----LPPELRTLEVSGNQLTSLPV------L--P 261 (788)
T ss_pred CCCcEEEcCCCCCCcC-C-cchh--cCCCEEEccCCcCCCCC---C----CCCCCcEEEecCCccCcccC------c--c
Confidence 3456789999988843 4 3343 47899999999988873 1 26789999999999887653 1 4
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.++. +|..+ .+|+.|++++|+++ .+|. ..++|+.|+ ++|.++.+ | .
T Consensus 262 ~sL~~L~Ls~N~L~~-Lp~lp----~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-----p-------~ 319 (788)
T PRK15387 262 PGLLELSIFSNPLTH-LPALP----SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-----P-------A 319 (788)
T ss_pred cccceeeccCCchhh-hhhch----hhcCEEECcCCccc-cccc----cccccceeECCCCccccC-----C-------C
Confidence 678999999998874 34322 67889999999887 4454 246788888 88888763 3 1
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
. ..+|+.|++++|.++.+|.. ..+|++|++++|++++ +|.. |.+|+.|++++|.++
T Consensus 320 l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---------p~~L~~L~Ls~N~L~-------- 375 (788)
T PRK15387 320 L---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---------PSELYKLWAYNNRLT-------- 375 (788)
T ss_pred C---cccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---------Ccccceehhhccccc--------
Confidence 1 23577888899988887752 2478899999998885 3331 246888899999887
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT 313 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 313 (466)
.+|.. ..+|+.|++++|.| + .+|.. .++|+.|++++|.+++ +|.
T Consensus 376 ---~LP~l---~~~L~~LdLs~N~L-------t-~LP~l---~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 376 ---SLPAL---PSGLKELIVSGNRL-------T-SLPVL---PSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred ---cCccc---ccccceEEecCCcc-------c-CCCCc---ccCCCEEEccCCcCCC-CCc
Confidence 44542 24688888888665 2 44443 2578889999999874 454
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=7.8e-23 Score=205.36 Aligned_cols=354 Identities=26% Similarity=0.289 Sum_probs=226.0
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
.+..|+++.|.+..... ++..+.-+|+.|++++|.++.. |..+.. +++|+.|+++.|.+...+. .... +.
T Consensus 22 ~~~~ln~~~N~~l~~pl-~~~~~~v~L~~l~lsnn~~~~f---p~~it~-l~~L~~ln~s~n~i~~vp~---s~~~--~~ 91 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPL-EFVEKRVKLKSLDLSNNQISSF---PIQITL-LSHLRQLNLSRNYIRSVPS---SCSN--MR 91 (1081)
T ss_pred HHHhhhccccccccCch-HHhhheeeeEEeeccccccccC---Cchhhh-HHHHhhcccchhhHhhCch---hhhh--hh
Confidence 37788999888765444 6777777799999999999887 667777 9999999999999988764 5666 89
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc-ccccccccC---CCccc--
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN-YITGISKCS---LPITL-- 166 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n-~l~~~~~~~---l~~~~-- 166 (466)
+|++|.|.+|.+. ..|..+..+ ++|+.|+++.|.+. .+|. .+..+..+..+. ++| ++...+... +....
T Consensus 92 ~l~~lnL~~n~l~-~lP~~~~~l-knl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 92 NLQYLNLKNNRLQ-SLPASISEL-KNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNV 167 (1081)
T ss_pred cchhheeccchhh-cCchhHHhh-hcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhh
Confidence 9999999999987 678899999 99999999999987 6777 777777777777 666 222111000 00000
Q ss_pred --cCccccccCCCccCEEecCCCcCCCCCcccCCC--------------------CCcCEEEeeCCcCCCccchhhhhcc
Q 047429 167 --VRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDM--------------------CCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 167 --~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l--------------------~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
..+...+..++. .|+|.+|.+... .+..+ ++|+.|+.++|.++.. .
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~--------~ 235 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL--------D 235 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee--------c
Confidence 111123333333 488888877621 11222 3444555555554422 1
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee----------------eeecccccccCC
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------------WLRFNHINGSAT 288 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------------~l~~n~~~~~~~ 288 (466)
....|.+|+.+++++|+++ .+|+|+..+.+|+.++..+|.+ ....|.+. -+|
T Consensus 236 ~~p~p~nl~~~dis~n~l~-----------~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip 303 (1081)
T KOG0618|consen 236 VHPVPLNLQYLDISHNNLS-----------NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIP 303 (1081)
T ss_pred cccccccceeeecchhhhh-----------cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCC
Confidence 2235567999999999998 8888999999999999999887 24456664 577
Q ss_pred CCCCCCCCccEEEccCCCCCCCchhhhhhhhh-hhhcC-CCCceeeeeeeccCCC--Ccccccceeeeeecccchhhhcc
Q 047429 289 PKLCSSPMLQVLDFSHNNISGMVPTCLNNLSA-MVQNG-SSNVIVEYRIQLIDDP--EFDYQDRALLVWKPIDSIYKITL 364 (466)
Q Consensus 289 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~l~-~~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
+....++.|+.|||..|++...++..|.-+.. +..++ ..+.+...+ ...+.. .+.......+.+.......+.++
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~ 382 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNF 382 (1081)
T ss_pred CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhccc
Confidence 77888999999999999997444434433333 55555 222222111 000000 00001111111111112223467
Q ss_pred CCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 365 GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 365 ~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
.+|+.|+|++|++. .+|.. .+.++..|+.|+||||+++ .+|+
T Consensus 383 ~hLKVLhLsyNrL~-~fpas-----------~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPAS-----------KLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred cceeeeeecccccc-cCCHH-----------HHhchHHhHHHhcccchhh-hhhH
Confidence 77888888888877 44443 2455566666666666665 4554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=6.5e-20 Score=202.81 Aligned_cols=275 Identities=18% Similarity=0.140 Sum_probs=181.1
Q ss_pred ccccccCCcCCcEEeCCCccc------cccchHHHhhcCC-CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCC
Q 047429 5 EAGFHISLEDLQSINIGLNAI------RVRKFDQWLSYHN-KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAP 77 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 77 (466)
+..+|..+++|+.|.+..+.. ....| ..+..++ +|+.|++.++.+... |..+ . ..+|++|++.+|.+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~l---P~~f-~-~~~L~~L~L~~s~l 623 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCM---PSNF-R-PENLVKLQMQGSKL 623 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCC---CCcC-C-ccCCcEEECcCccc
Confidence 345688999999999976542 22334 4555554 599999999988877 4343 4 68999999999988
Q ss_pred CCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccc-cc
Q 047429 78 PKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNY-IT 155 (466)
Q Consensus 78 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~-l~ 155 (466)
..... .+.. +++|++|+++++......|. +..+ ++|++|++++|.....+|. .+..+++|+.|+ +.|. +.
T Consensus 624 ~~L~~---~~~~--l~~Lk~L~Ls~~~~l~~ip~-ls~l-~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 624 EKLWD---GVHS--LTGLRNIDLRGSKNLKEIPD-LSMA-TNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccc---cccc--CCCCCEEECCCCCCcCcCCc-cccC-CcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcC
Confidence 87644 3445 88999999998765445553 6667 8999999999876667888 889999999999 6553 33
Q ss_pred cccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccce
Q 047429 156 GISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234 (466)
Q Consensus 156 ~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 234 (466)
. +| ..+ ++++|+.|++++|.... +|.. ..+|+.|++++|.+.. +|..+ .+ ++|+.
T Consensus 696 ~-----Lp-------~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l------~~L~~ 751 (1153)
T PLN03210 696 I-----LP-------TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RL------ENLDE 751 (1153)
T ss_pred c-----cC-------CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cc------ccccc
Confidence 3 45 333 67889999999885433 5543 4578899999988764 34322 11 45677
Q ss_pred EecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhh
Q 047429 235 FMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 235 L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 314 (466)
|++.++........ +....|..+..+++|+.|++++| ...+.+|..++++++|+.|++++|...+.+|..
T Consensus 752 L~l~~~~~~~l~~~---~~~l~~~~~~~~~sL~~L~Ls~n-------~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 752 LILCEMKSEKLWER---VQPLTPLMTMLSPSLTRLFLSDI-------PSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccccchhhcccc---ccccchhhhhccccchheeCCCC-------CCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 76665432100000 00011112233467777777774 333566777777777788887776544456655
Q ss_pred hhhhhhhhhcCCCC
Q 047429 315 LNNLSAMVQNGSSN 328 (466)
Q Consensus 315 ~~~l~~L~~l~~~n 328 (466)
+ ++++|+.|+++.
T Consensus 822 ~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 822 I-NLESLESLDLSG 834 (1153)
T ss_pred C-CccccCEEECCC
Confidence 4 566666666443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-22 Score=186.20 Aligned_cols=267 Identities=24% Similarity=0.300 Sum_probs=172.3
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCC-CCCCCCCccccccccCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSS-SAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~l 92 (466)
.-..++|..|.|+.+.+ ..|+.+++||.||||+|.|+.+. + ..++++++|..|-+.+ |+|+.++. ..|.. +
T Consensus 68 ~tveirLdqN~I~~iP~-~aF~~l~~LRrLdLS~N~Is~I~--p-~AF~GL~~l~~Lvlyg~NkI~~l~k--~~F~g--L 139 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPP-GAFKTLHRLRRLDLSKNNISFIA--P-DAFKGLASLLSLVLYGNNKITDLPK--GAFGG--L 139 (498)
T ss_pred cceEEEeccCCcccCCh-hhccchhhhceecccccchhhcC--h-HhhhhhHhhhHHHhhcCCchhhhhh--hHhhh--H
Confidence 34556666777775544 67777777777777777776663 3 3333366665554443 66776665 56666 6
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccccccc---------------
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITG--------------- 156 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~--------------- 156 (466)
.+++.|.+.-|++.-...+.|..+ +++..|.+.+|.+. .++.++|..+..++.+. ..|....
T Consensus 140 ~slqrLllNan~i~Cir~~al~dL-~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 140 SSLQRLLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHhcChhhhcchhHHHHHHh-hhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 677777777776666666666666 66666666666665 33333555555555554 3332100
Q ss_pred ----ccccCCCccc--------------------------------cCccccccCCCccCEEecCCCcCCCC-CcccCCC
Q 047429 157 ----ISKCSLPITL--------------------------------VRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDM 199 (466)
Q Consensus 157 ----~~~~~l~~~~--------------------------------~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l 199 (466)
...+..|..+ .-+...|..+++|+.|++++|+++.+ +.+|.+.
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 0000000000 12224578899999999999999995 4589999
Q ss_pred CCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee---
Q 047429 200 CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL--- 276 (466)
Q Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l--- 276 (466)
..++.|.|..|++.......|..+ ..|+.|+|++|+|+-.. |.+|..+.+|..|+|-.|.+
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~l------s~L~tL~L~~N~it~~~----------~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGL------SGLKTLSLYDNQITTVA----------PGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhcc------ccceeeeecCCeeEEEe----------cccccccceeeeeehccCcccCc
Confidence 999999999999986666666665 57999999999998332 45688889999999988876
Q ss_pred --------eeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 277 --------WLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 277 --------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
|+++....|..| . ..-..++.++++...+.
T Consensus 362 C~l~wl~~Wlr~~~~~~~~~-C-q~p~~~~~~~~~dv~~~ 399 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKSVVGNPR-C-QSPGFVRQIPISDVAFG 399 (498)
T ss_pred cchHHHHHHHhhCCCCCCCC-C-CCCchhccccchhcccc
Confidence 788877444332 1 12234667777766654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.5e-19 Score=186.67 Aligned_cols=245 Identities=27% Similarity=0.313 Sum_probs=189.1
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|+.|++++|+++.. | . ..++|++|++++|+++.++ . ..++|++|++++|.+..++.. .
T Consensus 222 ~~L~~L~L~~N~Lt~L-P-~---lp~~Lk~LdLs~N~LtsLP---~----lp~sL~~L~Ls~N~L~~Lp~l--------p 281 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-P-A---LPPELRTLEVSGNQLTSLP---V----LPPGLLELSIFSNPLTHLPAL--------P 281 (788)
T ss_pred cCCCEEEccCCcCCCC-C-C---CCCCCcEEEecCCccCccc---C----cccccceeeccCCchhhhhhc--------h
Confidence 3789999999999864 3 2 3688999999999999873 2 156899999999998876541 4
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
.+|+.|++++|+++.. |.. . ++|+.|++++|.+.+ +|. . ...|+.|. +.|.++. +| .
T Consensus 282 ~~L~~L~Ls~N~Lt~L-P~~---p-~~L~~LdLS~N~L~~-Lp~-l---p~~L~~L~Ls~N~L~~-----LP-------~ 339 (788)
T PRK15387 282 SGLCKLWIFGNQLTSL-PVL---P-PGLQELSVSDNQLAS-LPA-L---PSELCKLWAYNNQLTS-----LP-------T 339 (788)
T ss_pred hhcCEEECcCCccccc-ccc---c-cccceeECCCCcccc-CCC-C---cccccccccccCcccc-----cc-------c
Confidence 6799999999999854 432 3 789999999999984 443 2 24577888 8888876 33 1
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
+ ..+|++|++++|+++.+|.. ..+|+.|++++|++++ +|.. +.+|+.|++++|.++
T Consensus 340 -l--p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l---------~~~L~~LdLs~N~Lt-------- 395 (788)
T PRK15387 340 -L--PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL---------PSGLKELIVSGNRLT-------- 395 (788)
T ss_pred -c--ccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc---------ccccceEEecCCccc--------
Confidence 1 24799999999999998864 3578899999999985 4432 246999999999998
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.+|.. .++|+.|++++|.+ ..+|.. ..+|+.|++++|+++ .+|..+.+++.|
T Consensus 396 ---~LP~l---~s~L~~LdLS~N~L--------ssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L---------- 447 (788)
T PRK15387 396 ---SLPVL---PSELKELMVSGNRL--------TSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSE---------- 447 (788)
T ss_pred ---CCCCc---ccCCCEEEccCCcC--------CCCCcc---hhhhhhhhhccCccc-ccChHHhhccCC----------
Confidence 45543 35799999999765 345643 346889999999998 678888776666
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHh
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITS 387 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~ 387 (466)
+.|+|++|++++.+|..+..
T Consensus 448 ------------------------------------~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 448 ------------------------------------TTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ------------------------------------CeEECCCCCCCchHHHHHHH
Confidence 88999999999887776644
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.4e-19 Score=188.13 Aligned_cols=207 Identities=25% Similarity=0.346 Sum_probs=124.2
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
+.+.|++++++++.+ |..+ .++|+.|++++|.++.++. .+ ..+|++|++++|.++. +|..+. .
T Consensus 179 ~~~~L~L~~~~LtsL---P~~I---p~~L~~L~Ls~N~LtsLP~---~l----~~nL~~L~Ls~N~Lts-LP~~l~---~ 241 (754)
T PRK15370 179 NKTELRLKILGLTTI---PACI---PEQITTLILDNNELKSLPE---NL----QGNIKTLYANSNQLTS-IPATLP---D 241 (754)
T ss_pred CceEEEeCCCCcCcC---Cccc---ccCCcEEEecCCCCCcCCh---hh----ccCCCEEECCCCcccc-CChhhh---c
Confidence 456677777766665 3333 2356777777777665543 11 2467777777777663 344332 4
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccC
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFG 197 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~ 197 (466)
+|+.|+|++|.+. .+|. .+. .+|+.|+ +.|.++. +| ..+. ++|+.|++++|.++.+|..+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~-~l~--s~L~~L~Ls~N~L~~-----LP-------~~l~--~sL~~L~Ls~N~Lt~LP~~lp 303 (754)
T PRK15370 242 TIQEMELSINRIT-ELPE-RLP--SALQSLDLFHNKISC-----LP-------ENLP--EELRYLSVYDNSIRTLPAHLP 303 (754)
T ss_pred cccEEECcCCccC-cCCh-hHh--CCCCEEECcCCccCc-----cc-------cccC--CCCcEEECCCCccccCcccch
Confidence 5677777777766 4454 332 3566666 6666654 33 2221 367778888887777765443
Q ss_pred CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeee
Q 047429 198 DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLW 277 (466)
Q Consensus 198 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~ 277 (466)
++|+.|++++|.++.. |.. .+++|+.|++++|.++ .+|..+. ++|+.|++++|++
T Consensus 304 --~sL~~L~Ls~N~Lt~L-P~~--------l~~sL~~L~Ls~N~Lt-----------~LP~~l~--~sL~~L~Ls~N~L- 358 (754)
T PRK15370 304 --SGITHLNVQSNSLTAL-PET--------LPPGLKTLEAGENALT-----------SLPASLP--PELQVLDVSKNQI- 358 (754)
T ss_pred --hhHHHHHhcCCccccC-Ccc--------ccccceeccccCCccc-----------cCChhhc--CcccEEECCCCCC-
Confidence 3677777888777643 321 1245777888888777 4444442 5777888877655
Q ss_pred eecccccccCCCCCCCCCCccEEEccCCCCCCCchhhh
Q 047429 278 LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 278 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 315 (466)
..+|..+ .+.|++|+|++|.+++ +|..+
T Consensus 359 -------~~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 359 -------TVLPETL--PPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred -------CcCChhh--cCCcCEEECCCCcCCC-CCHhH
Confidence 2344433 2567888888888774 44443
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=3.6e-18 Score=188.99 Aligned_cols=317 Identities=21% Similarity=0.191 Sum_probs=218.8
Q ss_pred cccCC-cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 8 FHISL-EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 8 ~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
.+..+ .+|+.|.+.++.+... | ..| ...+|++|+++++.+... +..+.. +++|++|+|+++......+ .
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~l-P-~~f-~~~~L~~L~L~~s~l~~L---~~~~~~-l~~Lk~L~Ls~~~~l~~ip---~ 652 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRCM-P-SNF-RPENLVKLQMQGSKLEKL---WDGVHS-LTGLRNIDLRGSKNLKEIP---D 652 (1153)
T ss_pred chhhcCcccEEEEecCCCCCCC-C-CcC-CccCCcEEECcCcccccc---cccccc-CCCCCEEECCCCCCcCcCC---c
Confidence 34444 4699999999988754 4 444 578999999999998877 445555 9999999999875333333 3
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
+.. +++|++|++++|......|..+..+ ++|+.|++++|.....+|. .+ ++++|+.|+ ++|..... +|
T Consensus 653 ls~--l~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~----~p-- 721 (1153)
T PLN03210 653 LSM--ATNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKS----FP-- 721 (1153)
T ss_pred ccc--CCcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccc----cc--
Confidence 555 8999999999997767788899999 9999999999865556776 44 788999998 66643322 33
Q ss_pred ccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhc--cccccccccceEecCCcccc
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNF--SAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~ 243 (466)
. ..++|+.|++++|.+..+|..+ .+++|++|++.++...... ...... .....+++|+.|++++|...
T Consensus 722 -----~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 722 -----D---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLW-ERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred -----c---ccCCcCeeecCCCccccccccc-cccccccccccccchhhcc-ccccccchhhhhccccchheeCCCCCCc
Confidence 2 2468999999999998888765 5788999988775432111 000000 01123467999999998654
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ 323 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 323 (466)
+ .+|.++.++++|+.|++++|. .+ +.+|..+ .+++|+.|++++|.....+|... ++|+.
T Consensus 792 ~----------~lP~si~~L~~L~~L~Ls~C~------~L-~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL~~ 850 (1153)
T PLN03210 792 V----------ELPSSIQNLHKLEHLEIENCI------NL-ETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNISD 850 (1153)
T ss_pred c----------ccChhhhCCCCCCEEECCCCC------Cc-CeeCCCC-CccccCEEECCCCCccccccccc---cccCE
Confidence 2 567789999999999999852 22 4566655 78899999999987555555433 34444
Q ss_pred cCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCC-CcCCcCCcHHHHhhccCCCcccccCCCC
Q 047429 324 NGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSD-NNLSGKIPEEITSLLIGKIPRSFSQLSH 402 (466)
Q Consensus 324 l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~ip~~i~~l~~~~ip~~l~~l~~ 402 (466)
|+++++.. . ..+..+..+++|+.|+|++ |++. .+|..+..+++
T Consensus 851 L~Ls~n~i----------------------~-~iP~si~~l~~L~~L~L~~C~~L~-------------~l~~~~~~L~~ 894 (1153)
T PLN03210 851 LNLSRTGI----------------------E-EVPWWIEKFSNLSFLDMNGCNNLQ-------------RVSLNISKLKH 894 (1153)
T ss_pred eECCCCCC----------------------c-cChHHHhcCCCCCEEECCCCCCcC-------------ccCcccccccC
Confidence 44322211 0 1122345677778888887 4455 34445666777
Q ss_pred CCeeeccCCc
Q 047429 403 LGVVNLSNNN 412 (466)
Q Consensus 403 L~~L~Ls~N~ 412 (466)
|+.+++++|.
T Consensus 895 L~~L~l~~C~ 904 (1153)
T PLN03210 895 LETVDFSDCG 904 (1153)
T ss_pred CCeeecCCCc
Confidence 7777777764
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.9e-19 Score=185.71 Aligned_cols=232 Identities=23% Similarity=0.372 Sum_probs=173.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+...|+++++.++.. | ..+ .++|+.|+|++|.++.+ +..+. ++|++|++++|.++.++. .+ .
T Consensus 178 ~~~~~L~L~~~~LtsL-P-~~I--p~~L~~L~Ls~N~LtsL---P~~l~---~nL~~L~Ls~N~LtsLP~---~l----~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTTI-P-ACI--PEQITTLILDNNELKSL---PENLQ---GNIKTLYANSNQLTSIPA---TL----P 240 (754)
T ss_pred cCceEEEeCCCCcCcC-C-ccc--ccCCcEEEecCCCCCcC---Chhhc---cCCCEEECCCCccccCCh---hh----h
Confidence 4568899999988854 3 333 35799999999999987 44443 589999999999987654 22 3
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
.+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|. .+. .+|+.|+ +.|.++. +| .
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~-----LP-------~ 300 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRT-----LP-------A 300 (754)
T ss_pred ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccC-cccc-ccC--CCCcEEECCCCcccc-----Cc-------c
Confidence 47999999999998 4566553 67999999999998 4665 443 5799999 8888876 33 2
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+++ +|.. .+++|+.|++++|+++
T Consensus 301 ~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~--------l~~sL~~L~Ls~N~L~-------- 359 (754)
T PRK15370 301 HLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-LPAS--------LPPELQVLDVSKNQIT-------- 359 (754)
T ss_pred cch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-CChh--------hcCcccEEECCCCCCC--------
Confidence 222 478999999999998876543 689999999999985 4432 2357999999999998
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNL 318 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 318 (466)
.+|..+ .++|++|++++|.+ + .+|..+. ..|+.|++++|++. .+|..+.++
T Consensus 360 ---~LP~~l--p~~L~~LdLs~N~L-------t-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 360 ---VLPETL--PPTITTLDVSRNAL-------T-NLPENLP--AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred ---cCChhh--cCCcCEEECCCCcC-------C-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence 555544 25899999999765 3 4565543 36999999999998 566655543
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=1.9e-21 Score=178.26 Aligned_cols=294 Identities=22% Similarity=0.282 Sum_probs=198.8
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccC-CccccCCChhhhhcCCc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~ 144 (466)
.-..++|..|.|+.+++ .+|.. +++|+.|||++|.|+.+.|++|.++ ..+..|-+.+ |+|+ .+|...|+++..
T Consensus 68 ~tveirLdqN~I~~iP~--~aF~~--l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPP--GAFKT--LHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred cceEEEeccCCcccCCh--hhccc--hhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence 66789999999999988 78888 9999999999999999999999998 7776666655 8888 566669999999
Q ss_pred ccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCcc-chhhh
Q 047429 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKL-PELFL 221 (466)
Q Consensus 145 L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~-~~~~~ 221 (466)
++.|. .-|++... .. ..|..+++|..|.+..|.+..++. .|..+.+++++.+..|.+-... ..+..
T Consensus 142 lqrLllNan~i~Ci----r~-------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 142 LQRLLLNANHINCI----RQ-------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred HHHHhcChhhhcch----hH-------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh
Confidence 99888 77777665 33 688899999999999999988876 7888999999998888742111 00000
Q ss_pred hc-------cccccccccceEecCCccccccCCCCcccccccCc-ccCC-CCCCcEEeCCCCeeeeecccccccCC-CCC
Q 047429 222 NF-------SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCR-PSSLVELDLESNQLWLRFNHINGSAT-PKL 291 (466)
Q Consensus 222 ~~-------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~-l~~L~~L~L~~n~l~l~~n~~~~~~~-~~~ 291 (466)
.. ++|- .-.....+.+.++. .++. .|.. ...+..-..+. +...+..| ..|
T Consensus 211 ~~~a~~~ietsga--rc~~p~rl~~~Ri~-----------q~~a~kf~c~~esl~s~~~~~-------d~~d~~cP~~cf 270 (498)
T KOG4237|consen 211 DDLAMNPIETSGA--RCVSPYRLYYKRIN-----------QEDARKFLCSLESLPSRLSSE-------DFPDSICPAKCF 270 (498)
T ss_pred hHHhhchhhcccc--eecchHHHHHHHhc-----------ccchhhhhhhHHhHHHhhccc-------cCcCCcChHHHH
Confidence 00 0000 01122223333333 1111 1111 11221111112 22223333 468
Q ss_pred CCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEE
Q 047429 292 CSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSID 371 (466)
Q Consensus 292 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 371 (466)
..+++|+.|+|++|+++++-+.+|.+...+ ++|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l----------------------------------------------~eL~ 304 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAEL----------------------------------------------QELY 304 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhh----------------------------------------------hhhh
Confidence 899999999999999999999999988888 6677
Q ss_pred CCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHH
Q 047429 372 LSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYA 451 (466)
Q Consensus 372 Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (466)
|..|++. .+... .|.++..|++|+|.+|+|+..-|. .++++...+-.++-.++|.|.|+..+ +-.
T Consensus 305 L~~N~l~-~v~~~-----------~f~~ls~L~tL~L~~N~it~~~~~--aF~~~~~l~~l~l~~Np~~CnC~l~w-l~~ 369 (498)
T KOG4237|consen 305 LTRNKLE-FVSSG-----------MFQGLSGLKTLSLYDNQITTVAPG--AFQTLFSLSTLNLLSNPFNCNCRLAW-LGE 369 (498)
T ss_pred cCcchHH-HHHHH-----------hhhccccceeeeecCCeeEEEecc--cccccceeeeeehccCcccCccchHH-HHH
Confidence 7777776 33322 367777788888888888744443 33455555555556677888888764 777
Q ss_pred HHHHHH
Q 047429 452 WIAVKM 457 (466)
Q Consensus 452 ~~~~~~ 457 (466)
|+..+.
T Consensus 370 Wlr~~~ 375 (498)
T KOG4237|consen 370 WLRKKS 375 (498)
T ss_pred HHhhCC
Confidence 776543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.8e-19 Score=173.26 Aligned_cols=276 Identities=23% Similarity=0.253 Sum_probs=179.6
Q ss_pred EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCc--cchHHHHhcCCCCCCEEEcCCCCCCCCCc----cccccccC
Q 047429 17 SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINY----RSHSLVNS 90 (466)
Q Consensus 17 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~ 90 (466)
.|+|+.+.+++......+..+..|++|+++++.++.. ..++..+.. .+.+++++++++.+..... ....+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~- 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP-QPSLKELCLSLNETGRIPRGLQSLLQGLTK- 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh-CCCceEEeccccccCCcchHHHHHHHHHHh-
Confidence 5778888887554446777888899999999988553 112333444 7789999999887763111 0023444
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCC---CcEEEccCCccccCCCh---hhhhcC-Ccccccc-cccccccccccCC
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKS---LVYLDLSNNQLQGPTPD---YAFRNM-TSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~---L~~L~Ls~n~l~~~~~~---~~~~~l-~~L~~L~-~~n~l~~~~~~~l 162 (466)
+++|++|++++|.+....+..+..+ .. |++|++++|.+.+.... ..+..+ ++|+.|+ +.|.+++.....+
T Consensus 80 -~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 -GCGLQELDLSDNALGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred -cCceeEEEccCCCCChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 7789999999998876666666665 45 99999999987632111 034455 7788888 8887774322223
Q ss_pred CccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEec
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFML 237 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 237 (466)
+ ..+..+++|++|++++|.+++ ++..+...++|++|++++|.+++.....+...+... ++|++|++
T Consensus 158 ~-------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~--~~L~~L~l 228 (319)
T cd00116 158 A-------KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL--KSLEVLNL 228 (319)
T ss_pred H-------HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc--CCCCEEec
Confidence 3 456777889999999998874 334456667999999999988765544443332222 57999999
Q ss_pred CCccccccCCCCcccccccCccc-CCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhh
Q 047429 238 QNNMLSGSLPGVTELDGTFPKQF-CRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 238 ~~n~l~~~~~~~~~l~~~lp~~~-~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 314 (466)
++|.+++.... .+...+ ...+.|+.|++++|.+.-. . ...+...+..+++|+++++++|.++......
T Consensus 229 s~n~l~~~~~~------~l~~~~~~~~~~L~~L~l~~n~i~~~--~-~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 229 GDNNLTDAGAA------ALASALLSPNISLLTLSLSCNDITDD--G-AKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred CCCcCchHHHH------HHHHHHhccCCCceEEEccCCCCCcH--H-HHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 99988742110 111111 1347899999998655100 0 0123344556688999999999998654333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.8e-19 Score=171.03 Aligned_cols=239 Identities=23% Similarity=0.227 Sum_probs=139.5
Q ss_pred EEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCc--cccccccCCCCCccEEEcCCCCCCc------hhhhhh
Q 047429 42 SLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINY--RSHSLVNSSSSSLTHLHLSLCGLSN------SAYHCL 113 (466)
Q Consensus 42 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l 113 (466)
.|+|..+.+++.. |...+.. +..|++|+++++.++.... ....+.. .+++++++++++.+.+ ..+..+
T Consensus 2 ~l~L~~~~l~~~~-~~~~~~~-l~~L~~l~l~~~~l~~~~~~~i~~~l~~--~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKGELLKTER-ATELLPK-LLCLQVLRLEGNTLGEEAAKALASALRP--QPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred ccccccCcccccc-hHHHHHH-HhhccEEeecCCCCcHHHHHHHHHHHhh--CCCceEEeccccccCCcchHHHHHHHHH
Confidence 4678888876432 2434444 8889999999998865321 1122334 6779999999998762 234456
Q ss_pred hcccCCCcEEEccCCccccCCChhhhhcCCc---ccccc-cccccccccccCCCccccCccccccCC-CccCEEecCCCc
Q 047429 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTS---LASLT-SLNYITGISKCSLPITLVRPKYAFSNV-TSLMDLDLSKNQ 188 (466)
Q Consensus 114 ~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~---L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l-~~L~~L~Ls~n~ 188 (466)
..+ ++|+.|++++|.+.+..+. .+..+.. |++|+ +.|.++..+...+. ..+..+ ++|++|++++|.
T Consensus 78 ~~~-~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-------~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 78 TKG-CGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLA-------KGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred Hhc-CceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHH-------HHHHhCCCCceEEEcCCCc
Confidence 666 8999999999998755554 5555544 77777 66666532211122 234455 677777777777
Q ss_pred CCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCC
Q 047429 189 ITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRP 263 (466)
Q Consensus 189 l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l 263 (466)
++. ++..+..+++|++|++++|.+++.....+...+... ++|+.|++++|.+++.... .++..+..+
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~i~~~~~~------~l~~~~~~~ 220 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN--CNLEVLDLNNNGLTDEGAS------ALAETLASL 220 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC--CCCCEEeccCCccChHHHH------HHHHHhccc
Confidence 763 333455566777777777776643222111111100 3577777777766532211 233445556
Q ss_pred CCCcEEeCCCCeeeeecccccccCCCCC-----CCCCCccEEEccCCCCC
Q 047429 264 SSLVELDLESNQLWLRFNHINGSATPKL-----CSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 264 ~~L~~L~L~~n~l~l~~n~~~~~~~~~~-----~~l~~L~~L~Ls~N~l~ 308 (466)
++|++|++++|.+ ++.....+ ...+.|+.|++++|.++
T Consensus 221 ~~L~~L~ls~n~l-------~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 221 KSLEVLNLGDNNL-------TDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred CCCCEEecCCCcC-------chHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 6777777776543 21111111 12356777777777665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1e-17 Score=137.15 Aligned_cols=121 Identities=24% Similarity=0.410 Sum_probs=52.3
Q ss_pred CCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccc
Q 047429 176 VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGT 255 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~ 255 (466)
+.++..|.+++|+++.+|..++.+.+|+.|++++|+++. .|....++ +.|+.|+++-|++. .
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl------~klr~lnvgmnrl~-----------~ 93 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSL------PKLRILNVGMNRLN-----------I 93 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhc------hhhhheecchhhhh-----------c
Confidence 334444444445444444444444444444444444442 22222222 33444444444444 4
Q ss_pred cCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 256 FPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 256 lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
+|..|+.++.|+.|||+.|.+ | ...+|..|..+..|+-|+|+.|.+. .+|..++++++|
T Consensus 94 lprgfgs~p~levldltynnl----~--e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l 152 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNL----N--ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL 152 (264)
T ss_pred CccccCCCchhhhhhcccccc----c--cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce
Confidence 444444444444444444322 1 1233444444444444444444443 344444444333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2e-17 Score=135.43 Aligned_cols=162 Identities=27% Similarity=0.427 Sum_probs=125.5
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l 196 (466)
.+++.|.||+|+++ ..|. .++.+.+|+.|+ .+|+++. +| ..++.+++|+.|+++-|++..+|..|
T Consensus 33 s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie~-----lp-------~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIEE-----LP-------TSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred hhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhhh-----cC-------hhhhhchhhhheecchhhhhcCcccc
Confidence 55666666666666 3343 566666666666 6666655 44 56778888888999888888888899
Q ss_pred CCCCCcCEEEeeCCcCCC-ccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCe
Q 047429 197 GDMCCLKTLKIHDNILTA-KLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~ 275 (466)
+.++.|+.||+.+|.+.. ..|+.|..+ ..|+.|+++.|.+. .+|...+++++|+.|.+..|.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m------~tlralyl~dndfe-----------~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYM------TTLRALYLGDNDFE-----------ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHH------HHHHHHHhcCCCcc-----------cCChhhhhhcceeEEeeccCc
Confidence 999999999999888764 456666555 56888999999998 788889999999999999876
Q ss_pred eeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhh
Q 047429 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319 (466)
Q Consensus 276 l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 319 (466)
+ -.+|..++.++.|++|.+.+|+++ .+|..++++.
T Consensus 162 l--------l~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 162 L--------LSLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred h--------hhCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 5 478889999999999999999998 5666666654
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=4.2e-14 Score=128.74 Aligned_cols=224 Identities=22% Similarity=0.250 Sum_probs=148.8
Q ss_pred ccCCcCCcEEeCCCccccccch---HHHhhcCCCCcEEEccCCCCCCcc-------c-hHHHHhcCCCCCCEEEcCCCCC
Q 047429 9 HISLEDLQSINIGLNAIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT-------D-WLQVVITGLPSLRELDLSSSAP 77 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~-------~-~~~~~~~~l~~L~~L~Ls~n~l 77 (466)
+..+..++.++||+|.+..... ...++..++|+..++|+--..... . +...+.. +++|++||||+|.+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~-~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLG-CPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhc-CCceeEeecccccc
Confidence 4567889999999999875433 134567788999998875433221 1 1223334 78999999999988
Q ss_pred CCCCc--cccccccCCCCCccEEEcCCCCCCchhhhhhhc------------ccCCCcEEEccCCccccCCCh---hhhh
Q 047429 78 PKINY--RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH------------ISKSLVYLDLSNNQLQGPTPD---YAFR 140 (466)
Q Consensus 78 ~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------------l~~~L~~L~Ls~n~l~~~~~~---~~~~ 140 (466)
..-.+ ...-+.. +..|++|.|.+|++.......++. -.+.|+++...+|++...... ..|.
T Consensus 105 G~~g~~~l~~ll~s--~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 105 GPKGIRGLEELLSS--CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred CccchHHHHHHHHh--ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 65433 1112334 789999999999997544333322 016789999999988643221 1344
Q ss_pred cCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCC
Q 047429 141 NMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTA 214 (466)
Q Consensus 141 ~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~ 214 (466)
..+.|+.+. ..|.|...+...+. ..+..+++|+.|||..|-++. +...+..+++|+.|++++|.+..
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~-------eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALA-------EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred hccccceEEEecccccCchhHHHH-------HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 566777777 77766554332223 567778888888888887765 44567777788888888888877
Q ss_pred ccchhhhhccccccccccceEecCCcccc
Q 047429 215 KLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
.....+...+.... ++|+++.+.+|.++
T Consensus 256 ~Ga~a~~~al~~~~-p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 256 EGAIAFVDALKESA-PSLEVLELAGNEIT 283 (382)
T ss_pred ccHHHHHHHHhccC-CCCceeccCcchhH
Confidence 76666665544443 36777777777776
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=8.1e-13 Score=123.68 Aligned_cols=214 Identities=21% Similarity=0.231 Sum_probs=148.6
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
+++++|+.+.|.+..+...........|++++.||||+|-+..... ...+...+|+|+.|+++.|.+...... ..-..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISS-NTTLL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccc-cchhh
Confidence 4778899999998887755432467789999999999998887743 334444599999999999988754432 11223
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
++.|+.|.++.|+++......+...+++|+.|+|..|........ ....++.|++|+ +.|.+...+. .
T Consensus 196 --l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~--~------ 264 (505)
T KOG3207|consen 196 --LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQ--G------ 264 (505)
T ss_pred --hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCccccccc--c------
Confidence 788999999999998554444333239999999999953323322 455678889999 8887766532 1
Q ss_pred ccccccCCCccCEEecCCCcCCC--CCcc-----cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcc
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG--IPKS-----FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~--~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
...+.++.|..|+++.+.+.+ .|+. ....++|++|++..|++... +. +... ...++|+.|.+..|.
T Consensus 265 --~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-~s-l~~l---~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 265 --YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-RS-LNHL---RTLENLKHLRITLNY 337 (505)
T ss_pred --cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-cc-cchh---hccchhhhhhccccc
Confidence 245678888999999998888 4443 34578899999999988421 11 1111 011467888887887
Q ss_pred cc
Q 047429 242 LS 243 (466)
Q Consensus 242 l~ 243 (466)
++
T Consensus 338 ln 339 (505)
T KOG3207|consen 338 LN 339 (505)
T ss_pred cc
Confidence 76
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=1.5e-13 Score=132.37 Aligned_cols=193 Identities=27% Similarity=0.383 Sum_probs=141.9
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCC
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 143 (466)
+..-...||+.|++..++.. +.. +-.|+.+.|..|.+. .+|..++.+ ..|++|+|+.|+++ ..|. .++.++
T Consensus 74 ltdt~~aDlsrNR~~elp~~---~~~--f~~Le~liLy~n~~r-~ip~~i~~L-~~lt~l~ls~NqlS-~lp~-~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEE---ACA--FVSLESLILYHNCIR-TIPEAICNL-EALTFLDLSSNQLS-HLPD-GLCDLP 144 (722)
T ss_pred ccchhhhhccccccccCchH---HHH--HHHHHHHHHHhccce-ecchhhhhh-hHHHHhhhccchhh-cCCh-hhhcCc
Confidence 55556678888888777653 222 445777788888776 567777777 78888888888887 5666 666665
Q ss_pred cccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhh
Q 047429 144 SLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 144 ~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
|+.|- ++|+++. +| ..++...+|.+||.+.|.+..+|..+.++.+|+.|.++.|++...+++ ...
T Consensus 145 -Lkvli~sNNkl~~-----lp-------~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~ 210 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTS-----LP-------EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCS 210 (722)
T ss_pred -ceeEEEecCcccc-----CC-------cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhC
Confidence 67777 7777766 45 567777888889999999888888888888999999998888755544 334
Q ss_pred ccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCC---CCCCccE
Q 047429 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC---SSPMLQV 299 (466)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~---~l~~L~~ 299 (466)
+ .|.+||++.|++. .+|..|.+|+.|++|-|.+|.+ ...|..++ ..+-.++
T Consensus 211 L-------pLi~lDfScNkis-----------~iPv~fr~m~~Lq~l~LenNPL--------qSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 211 L-------PLIRLDFSCNKIS-----------YLPVDFRKMRHLQVLQLENNPL--------QSPPAQICEKGKVHIFKY 264 (722)
T ss_pred C-------ceeeeecccCcee-----------ecchhhhhhhhheeeeeccCCC--------CCChHHHHhccceeeeee
Confidence 3 4889999999998 8888899999999999998776 34443332 3344566
Q ss_pred EEccCC
Q 047429 300 LDFSHN 305 (466)
Q Consensus 300 L~Ls~N 305 (466)
|+..-+
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 666655
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.8e-12 Score=120.08 Aligned_cols=232 Identities=21% Similarity=0.195 Sum_probs=155.3
Q ss_pred EeCCCccccccchHHHh----hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 18 INIGLNAIRVRKFDQWL----SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 18 L~Ls~n~i~~~~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
+.+++-.+...++ ..+ +++.+|++..|.++.+.... .....+.+++++.|||+.|-+..+.+....... ++
T Consensus 98 ~si~nK~vE~iGf-Dki~akQsn~kkL~~IsLdn~~V~~~~--~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eq--Lp 172 (505)
T KOG3207|consen 98 LSISNKQVEFIGF-DKIAAKQSNLKKLREISLDNYRVEDAG--IEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQ--LP 172 (505)
T ss_pred hhhcCceeEEecH-HHHHHHhhhHHhhhheeecCccccccc--hhhhhhhCCcceeecchhhhHHhHHHHHHHHHh--cc
Confidence 4445555555555 222 35788999999999887653 213444599999999999999888764333444 99
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|+.|+++.|++............++|+.|.|+.|+++..........+++|+.|. ..|..... -. ..
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----~~-------~~ 241 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----KA-------TS 241 (505)
T ss_pred cchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----ec-------ch
Confidence 99999999998864322222222288999999999998543333556789999999 66642111 11 23
Q ss_pred ccCCCccCEEecCCCcCCCCC--cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 173 FSNVTSLMDLDLSKNQITGIP--KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..-+..|++|||++|.+...+ ...+.++.|..|+++.|++.+.-.......-.....++|+.|++..|++.
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~------- 314 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR------- 314 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-------
Confidence 455788999999999988865 35678899999999999887532111111100011257899999999886
Q ss_pred ccccccC--cccCCCCCCcEEeCCCCee
Q 047429 251 ELDGTFP--KQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 251 ~l~~~lp--~~~~~l~~L~~L~L~~n~l 276 (466)
+.+ ..+..+++|+.|.+..|.+
T Consensus 315 ----~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 315 ----DWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ----cccccchhhccchhhhhhcccccc
Confidence 222 2244556677777667655
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.7e-11 Score=121.39 Aligned_cols=170 Identities=28% Similarity=0.414 Sum_probs=78.7
Q ss_pred EEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCC-cccccc-cccccccccccCCCccccCcccccc
Q 047429 97 HLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT-SLASLT-SLNYITGISKCSLPITLVRPKYAFS 174 (466)
Q Consensus 97 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~ 174 (466)
.+++..+.+... ...+... +.++.|++.+|.+.. ++. ...... +|+.|+ +.|.+... | ..+.
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~-~~l~~L~l~~n~i~~-i~~-~~~~~~~nL~~L~l~~N~i~~l-----~-------~~~~ 160 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLEL-TNLTSLDLDNNNITD-IPP-LIGLLKSNLKELDLSDNKIESL-----P-------SPLR 160 (394)
T ss_pred eeeccccccccC-chhhhcc-cceeEEecCCccccc-Ccc-ccccchhhcccccccccchhhh-----h-------hhhh
Confidence 355555554322 1222333 456666666666652 332 233332 555555 55554442 1 2344
Q ss_pred CCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccc
Q 047429 175 NVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDG 254 (466)
Q Consensus 175 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 254 (466)
.+++|+.|++++|++..+|......+.|+.|++++|++....+.. .. +..|+++.+++|++.
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~~------~~~L~~l~~~~N~~~----------- 222 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-EL------LSALEELDLSNNSII----------- 222 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhh-hh------hhhhhhhhhcCCcce-----------
Confidence 555555555555555555444334555555555555554322221 00 012555555555432
Q ss_pred ccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 255 TFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 255 ~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
..+..+..+..+..+.+.+|++ ...+..++.++.+++|++++|.++
T Consensus 223 ~~~~~~~~~~~l~~l~l~~n~~--------~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 223 ELLSSLSNLKNLSGLELSNNKL--------EDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ecchhhhhcccccccccCCcee--------eeccchhccccccceecccccccc
Confidence 3333444455555555555443 222444455555555555555554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=2e-12 Score=124.79 Aligned_cols=199 Identities=24% Similarity=0.310 Sum_probs=158.3
Q ss_pred EEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 70 LDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 70 L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
|.|++-++...+-.... .. +.--...+++.|++. ..|..+..+ ..|+.+.|..|.+. .+|. .++++..|..++
T Consensus 55 l~Ls~rrlk~fpr~a~~-~~--ltdt~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~-~i~~L~~lt~l~ 127 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAAS-YD--LTDTVFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPE-AICNLEALTFLD 127 (722)
T ss_pred cccccchhhcCCCcccc-cc--ccchhhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecch-hhhhhhHHHHhh
Confidence 45555555544432122 23 666778899999998 567777777 78999999999998 7888 899999999999
Q ss_pred -cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcccccc
Q 047429 150 -SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228 (466)
Q Consensus 150 -~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 228 (466)
+.|.++. +| ..+..++ |+.|-+++|+++.+|..++..+.|..||.+.|.+....+ ....+
T Consensus 128 ls~NqlS~-----lp-------~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l----- 188 (722)
T KOG0532|consen 128 LSSNQLSH-----LP-------DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYL----- 188 (722)
T ss_pred hccchhhc-----CC-------hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhH-----
Confidence 9998876 44 3444444 899999999999999999989999999999999985444 34444
Q ss_pred ccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 229 ~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.+|+.|.+..|++. .+|..+. .-.|..||+++|++ ..+|..|++++.|++|-|.+|.+.
T Consensus 189 -~slr~l~vrRn~l~-----------~lp~El~-~LpLi~lDfScNki--------s~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 189 -TSLRDLNVRRNHLE-----------DLPEELC-SLPLIRLDFSCNKI--------SYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -HHHHHHHHhhhhhh-----------hCCHHHh-CCceeeeecccCce--------eecchhhhhhhhheeeeeccCCCC
Confidence 46999999999998 7888777 45788999999877 689999999999999999999998
Q ss_pred CCchhhhh
Q 047429 309 GMVPTCLN 316 (466)
Q Consensus 309 ~~~p~~~~ 316 (466)
..|..+.
T Consensus 248 -SPPAqIC 254 (722)
T KOG0532|consen 248 -SPPAQIC 254 (722)
T ss_pred -CChHHHH
Confidence 5665443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=1.7e-11 Score=104.87 Aligned_cols=133 Identities=25% Similarity=0.242 Sum_probs=48.2
Q ss_pred ccccccccCCcCCcEEeCCCccccccchHHHhh-cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCC
Q 047429 3 ISEAGFHISLEDLQSINIGLNAIRVRKFDQWLS-YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKIN 81 (466)
Q Consensus 3 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 81 (466)
|.++.-+.+..++++|+|++|.|+.+. .+. .+.+|+.|++++|.|+.+. .+.. ++.|++|++++|.|+.+.
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l~----~l~~-L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKLE----GLPG-LPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--T----T-----TT--EEE--SS---S-C
T ss_pred ccccccccccccccccccccccccccc---chhhhhcCCCEEECCCCCCcccc----CccC-hhhhhhcccCCCCCCccc
Confidence 455566677778899999999988652 344 5788999999999998873 3444 889999999999998775
Q ss_pred ccccccccCCCCCccEEEcCCCCCCchh-hhhhhcccCCCcEEEccCCccccCCCh---hhhhcCCcccccc
Q 047429 82 YRSHSLVNSSSSSLTHLHLSLCGLSNSA-YHCLSHISKSLVYLDLSNNQLQGPTPD---YAFRNMTSLASLT 149 (466)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~ 149 (466)
. ..... +++|++|++++|+|.... -..+..+ ++|++|++.+|.+... +. ..+..+++|+.|+
T Consensus 81 ~--~l~~~--lp~L~~L~L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 81 E--GLDKN--LPNLQELYLSNNKISDLNELEPLSSL-PKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp H--HHHHH---TT--EEE-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred c--chHHh--CCcCCEEECcCCcCCChHHhHHHHcC-CCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 4 12234 789999999999886532 2456667 8999999999988743 32 2355677777776
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.4e-11 Score=103.94 Aligned_cols=129 Identities=26% Similarity=0.225 Sum_probs=40.5
Q ss_pred hhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhh
Q 047429 34 LSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCL 113 (466)
Q Consensus 34 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 113 (466)
+.+..++++|+|.+|.|+.+. .+...+.+|+.|++++|.|+.+.. +.. ++.|++|++++|+++...+...
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie----~L~~~l~~L~~L~Ls~N~I~~l~~----l~~--L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE----NLGATLDKLEVLDLSNNQITKLEG----LPG--LPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--TT----------TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccccccc----chhhhhcCCCEEECCCCCCccccC----ccC--hhhhhhcccCCCCCCccccchH
Confidence 344455677777777776652 122125677777777777766532 333 6667777777777765432222
Q ss_pred hcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC
Q 047429 114 SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP 193 (466)
Q Consensus 114 ~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 193 (466)
..+ ++|++|++++|++..... + ..+..+++|++|++.+|.+...+
T Consensus 85 ~~l-p~L~~L~L~~N~I~~l~~--------------------------l--------~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 85 KNL-PNLQELYLSNNKISDLNE--------------------------L--------EPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp HH--TT--EEE-TTS---SCCC--------------------------C--------GGGGG-TT--EEE-TT-GGGGST
T ss_pred HhC-CcCCEEECcCCcCCChHH--------------------------h--------HHHHcCCCcceeeccCCcccchh
Confidence 234 667777777776652110 1 24456677888888888776633
Q ss_pred c----ccCCCCCcCEEEe
Q 047429 194 K----SFGDMCCLKTLKI 207 (466)
Q Consensus 194 ~----~l~~l~~L~~L~L 207 (466)
. .+..+|+|+.||-
T Consensus 130 ~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 130 NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp THHHHHHHH-TT-SEETT
T ss_pred hHHHHHHHHcChhheeCC
Confidence 2 3556777777764
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=6.4e-13 Score=121.08 Aligned_cols=259 Identities=20% Similarity=0.230 Sum_probs=154.2
Q ss_pred CCCccEEEcCCCCCCchhh----hhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCcccc
Q 047429 92 SSSLTHLHLSLCGLSNSAY----HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLV 167 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~----~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~ 167 (466)
+.+++++++++|.+..... ..+... ++|+..++++- ++|.... .+|..+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~-ftGR~~~------------------------Ei~e~L~ 82 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDM-FTGRLKD------------------------EIPEALK 82 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhh-hcCCcHH------------------------HHHHHHH
Confidence 5677788888887764333 334444 56666666642 2221111 1221111
Q ss_pred CccccccCCCccCEEecCCCcCCC--CC---cccCCCCCcCEEEeeCCcCCCccchhhhh-------ccccccccccceE
Q 047429 168 RPKYAFSNVTSLMDLDLSKNQITG--IP---KSFGDMCCLKTLKIHDNILTAKLPELFLN-------FSAGCAKKSLQSF 235 (466)
Q Consensus 168 ~~~~~l~~l~~L~~L~Ls~n~l~~--~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-------~~~~~~~~~L~~L 235 (466)
.+..++..+++|++|+||.|.+.. ++ +.+..+..|++|.|.+|.+.......... .-....++.|+++
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 112456667788888888888765 22 24566788888888888775333332111 1111233568888
Q ss_pred ecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc-cCCCCCCCCCCccEEEccCCCCCCCc---
Q 047429 236 MLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING-SATPKLCSSPMLQVLDFSHNNISGMV--- 311 (466)
Q Consensus 236 ~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~--- 311 (466)
...+|++...... .+...|...+.|+.+.++.|.| ..=.. .+...+..+++|+.|||..|-++...
T Consensus 163 i~~rNrlen~ga~------~~A~~~~~~~~leevr~~qN~I----~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 163 ICGRNRLENGGAT------ALAEAFQSHPTLEEVRLSQNGI----RPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred EeeccccccccHH------HHHHHHHhccccceEEEecccc----cCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 8888887632211 2334466677888888888765 11100 22345678888888888888887443
Q ss_pred -hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecc---cchhhhccCCCcEEECCCCcCCcCCcHHHHh
Q 047429 312 -PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPI---DSIYKITLGLPKSIDLSDNNLSGKIPEEITS 387 (466)
Q Consensus 312 -p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~ 387 (466)
...+..|++|+.++.+.+.... .|. ........+.|+.|.+.+|.++-.-...
T Consensus 233 LakaL~s~~~L~El~l~dcll~~--------------------~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~--- 289 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLEN--------------------EGAIAFVDALKESAPSLEVLELAGNEITRDAALA--- 289 (382)
T ss_pred HHHHhcccchheeeccccccccc--------------------ccHHHHHHHHhccCCCCceeccCcchhHHHHHHH---
Confidence 3456667777777755544320 111 1122235788999999999988322221
Q ss_pred hccCCCcccccCCCCCCeeeccCCcCc
Q 047429 388 LLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 388 l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+..++...+.|..|+|++|.+.
T Consensus 290 -----la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 290 -----LAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred -----HHHHHhcchhhHHhcCCccccc
Confidence 2224567899999999999994
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=9.8e-11 Score=116.03 Aligned_cols=204 Identities=30% Similarity=0.400 Sum_probs=142.5
Q ss_pred ccccCCcCCc---EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCC-CCCEEEcCCCCCCCCCc
Q 047429 7 GFHISLEDLQ---SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLP-SLRELDLSSSAPPKINY 82 (466)
Q Consensus 7 ~~~~~l~~L~---~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~ 82 (466)
+....+..+. .++++.|.+.... ..+..++.++.|++.+|.++.+ +..... +. +|+.|++++|.+...+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i---~~~~~~-~~~nL~~L~l~~N~i~~l~~ 157 (394)
T COG4886 84 DGSENLLNLLPLPSLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDI---PPLIGL-LKSNLKELDLSDNKIESLPS 157 (394)
T ss_pred cccccccCCCCCceeeccccccccCc--hhhhcccceeEEecCCcccccC---cccccc-chhhcccccccccchhhhhh
Confidence 3344444444 5777777763322 3455667888999999888887 333333 53 88899999998887642
Q ss_pred cccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccC
Q 047429 83 RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 83 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~ 161 (466)
.+.. +++|+.|++++|+++.. +...... +.|+.|++++|.+. .+|. .......|+++. +.|.+..
T Consensus 158 ---~~~~--l~~L~~L~l~~N~l~~l-~~~~~~~-~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~~----- 223 (394)
T COG4886 158 ---PLRN--LPNLKNLDLSFNDLSDL-PKLLSNL-SNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSIIE----- 223 (394)
T ss_pred ---hhhc--cccccccccCCchhhhh-hhhhhhh-hhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCccee-----
Confidence 3455 88899999999988843 4443355 78888999999887 5555 445566688888 7774322
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcc
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
.+ ..+..+.++..+.+.+|++..++..++.++++++|++++|.++...+ +... .+++.|++++|.
T Consensus 224 ~~-------~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~------~~l~~L~~s~n~ 288 (394)
T COG4886 224 LL-------SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSL------TNLRELDLSGNS 288 (394)
T ss_pred cc-------hhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--cccc------CccCEEeccCcc
Confidence 22 46777888888888888888777778888889999999988875544 3332 468888888888
Q ss_pred cccc
Q 047429 242 LSGS 245 (466)
Q Consensus 242 l~~~ 245 (466)
+...
T Consensus 289 ~~~~ 292 (394)
T COG4886 289 LSNA 292 (394)
T ss_pred cccc
Confidence 8743
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=9.1e-11 Score=105.01 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=91.0
Q ss_pred cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCe
Q 047429 196 FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 196 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~ 275 (466)
...++.|+.+||++|.|+..... ..-. |.++.|++++|.+. .+.. +..+++|+.|||++|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDES-vKL~------Pkir~L~lS~N~i~-----------~v~n-La~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDES-VKLA------PKLRRLILSQNRIR-----------TVQN-LAELPQLQLLDLSGNL 340 (490)
T ss_pred cchHhhhhhccccccchhhhhhh-hhhc------cceeEEecccccee-----------eehh-hhhcccceEeecccch
Confidence 34456788888888887643322 1111 56888888888886 3333 7778888888888866
Q ss_pred eeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeec
Q 047429 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKP 355 (466)
Q Consensus 276 l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (466)
+ ..+..+-..+.+.+.|.|+.|.+. .++.+.+|-
T Consensus 341 L--------s~~~Gwh~KLGNIKtL~La~N~iE-----~LSGL~KLY--------------------------------- 374 (490)
T KOG1259|consen 341 L--------AECVGWHLKLGNIKTLKLAQNKIE-----TLSGLRKLY--------------------------------- 374 (490)
T ss_pred h--------HhhhhhHhhhcCEeeeehhhhhHh-----hhhhhHhhh---------------------------------
Confidence 5 234444456777888888888875 234443331
Q ss_pred ccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 356 IDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 356 ~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
+|..||+++|+|. .+.+ -.+++++|-|+++.|-+|.+. .+|+
T Consensus 375 ----------SLvnLDl~~N~Ie-~lde----------V~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 375 ----------SLVNLDLSSNQIE-ELDE----------VNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred ----------hheeccccccchh-hHHH----------hcccccccHHHHHhhcCCCcc-ccch
Confidence 2277889999887 2221 124788889999999999987 4554
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1.4e-09 Score=113.22 Aligned_cols=114 Identities=31% Similarity=0.545 Sum_probs=79.0
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
++.|+|++|.++| .+|..+..+++|+.|+|++ |.+.|.+|..++.+++|+.|+|++|.++|.+
T Consensus 420 v~~L~L~~n~L~g----------~ip~~i~~L~~L~~L~Ls~-------N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 420 IDGLGLDNQGLRG----------FIPNDISKLRHLQSINLSG-------NSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred EEEEECCCCCccc----------cCCHHHhCCCCCCEEECCC-------CcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 5667777776664 3445567777777777777 4455677777777777777777777777777
Q ss_pred hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccC
Q 047429 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIG 391 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~ 391 (466)
|..++++++| +.|+|++|+++|.+|..++.
T Consensus 483 P~~l~~L~~L----------------------------------------------~~L~Ls~N~l~g~iP~~l~~---- 512 (623)
T PLN03150 483 PESLGQLTSL----------------------------------------------RILNLNGNSLSGRVPAALGG---- 512 (623)
T ss_pred chHHhcCCCC----------------------------------------------CEEECcCCcccccCChHHhh----
Confidence 7776665555 88999999999877765432
Q ss_pred CCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 392 KIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 392 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
...++..+++++|...+..|.
T Consensus 513 -------~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 513 -------RLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred -------ccccCceEEecCCccccCCCC
Confidence 124566788888876555554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.3e-10 Score=104.12 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=77.4
Q ss_pred cCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccc
Q 047429 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~ 253 (466)
...+.|+++||++|.|+.+.+...-.|.++.|++++|.+..... ...+ ++|+.|||++|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L------~~L~~LDLS~N~Ls---------- 342 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAEL------PQLQLLDLSGNLLA---------- 342 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhc------ccceEeecccchhH----------
Confidence 34566888888888888877777777888888888888874332 2222 46888888888887
Q ss_pred cccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 254 ~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.+..+-..+-+++.|.|++|.| .....++.+-+|.+||+++|+|.
T Consensus 343 -~~~Gwh~KLGNIKtL~La~N~i---------E~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 343 -ECVGWHLKLGNIKTLKLAQNKI---------ETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred -hhhhhHhhhcCEeeeehhhhhH---------hhhhhhHhhhhheeccccccchh
Confidence 4444555677788888888766 33345667778888888888876
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=1.6e-10 Score=114.80 Aligned_cols=250 Identities=26% Similarity=0.291 Sum_probs=118.8
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
+..++.+++..|.+... . ..+..+++|+.|++.+|.|..+. ..+.. +++|++|++++|.|+.+.+ +..
T Consensus 71 l~~l~~l~l~~n~i~~~-~-~~l~~~~~l~~l~l~~n~i~~i~---~~l~~-~~~L~~L~ls~N~I~~i~~----l~~-- 138 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI-L-NHLSKLKSLEALDLYDNKIEKIE---NLLSS-LVNLQVLDLSFNKITKLEG----LST-- 138 (414)
T ss_pred hHhHHhhccchhhhhhh-h-cccccccceeeeeccccchhhcc---cchhh-hhcchheeccccccccccc----hhh--
Confidence 44455555555555431 1 23455666666666666665552 11233 5666666666666665533 222
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
++.|+.|++++|.++.. ..+..+ +.|+.+++++|.+....+.. ...+.+++.+. ..|.+...
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i------------- 201 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI------------- 201 (414)
T ss_pred ccchhhheeccCcchhc--cCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-------------
Confidence 44566666666666532 223334 55666666666655322200 24455555555 55555443
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCC--CcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMC--CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+..+..+..+++..|.+..+.. +..+. +|+.+++++|.+.... .....+ ..+..+++..|++...
T Consensus 202 ~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~------~~l~~l~~~~n~~~~~--- 270 (414)
T KOG0531|consen 202 EGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSP-EGLENL------KNLPVLDLSSNRISNL--- 270 (414)
T ss_pred cchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccccc-cccccc------ccccccchhhcccccc---
Confidence 233344444444555555554311 11222 2556666666554321 111111 2355555555555411
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCC-CCCCCCCccEEEccCCCCCCCchhh
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATP-KLCSSPMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~ 314 (466)
..+.....+..+....|.+ -........ .....+.++.+.+..|.+....+..
T Consensus 271 ---------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 271 ---------EGLERLPKLSELWLNDNKL----ALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred ---------ccccccchHHHhccCcchh----cchhhhhccccccccccccccccccCccccccccc
Confidence 0122233333444444333 000011111 2456677888888888877655533
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=4.3e-10 Score=111.77 Aligned_cols=225 Identities=25% Similarity=0.238 Sum_probs=160.7
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
..+..+++++.|++.+|.|.... ..+..+++|++|++++|.|+.+. .+.. ++.|+.|++++|.+..+..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~--~~l~~~~~L~~L~ls~N~I~~i~----~l~~-l~~L~~L~l~~N~i~~~~~---- 157 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIE--NLLSSLVNLQVLDLSFNKITKLE----GLST-LTLLKELNLSGNLISDISG---- 157 (414)
T ss_pred cccccccceeeeeccccchhhcc--cchhhhhcchheecccccccccc----chhh-ccchhhheeccCcchhccC----
Confidence 34788999999999999998763 23788999999999999999874 3444 7789999999999987743
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
+.. ++.|+.+++++|++....+.....+ .+++.+.+.+|.+.... .+..+..+..++ ..|.++..
T Consensus 158 ~~~--l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~-------- 223 (414)
T KOG0531|consen 158 LES--LKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKL-------- 223 (414)
T ss_pred Ccc--chhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhccc---chHHHHHHHHhhcccccceec--------
Confidence 444 8899999999999986655104555 88999999999987332 334445555556 66766654
Q ss_pred ccCccccccCCCc--cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 166 LVRPKYAFSNVTS--LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 166 ~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+.. |+.+++++|.+..++..+..+..+..|++..|++........ ...+..+....|.+.
T Consensus 224 -----~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~--------~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 224 -----EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLER--------LPKLSELWLNDNKLA 290 (414)
T ss_pred -----cCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccc--------cchHHHhccCcchhc
Confidence 23333443 899999999999876778889999999999998875433211 134566666666665
Q ss_pred ccCCCCcccccccCc-ccCCCCCCcEEeCCCCee
Q 047429 244 GSLPGVTELDGTFPK-QFCRPSSLVELDLESNQL 276 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l 276 (466)
.... .... .....+.++.+.+..|.+
T Consensus 291 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 291 LSEA-------ISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred chhh-------hhccccccccccccccccccCcc
Confidence 2211 1111 144556777777777654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=6.8e-09 Score=110.56 Aligned_cols=124 Identities=28% Similarity=0.268 Sum_probs=75.1
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC--CCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD--LREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
...+.+.+-+|.+.... .-..++.|++|-+.+|. +..+ ...++..++.|++|||++|.-....| ..++.
T Consensus 523 ~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~- 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSKLP--SSIGE- 593 (889)
T ss_pred hheeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCcCC--hHHhh-
Confidence 45566666666654321 12234467777777775 3333 44445557777777777665333333 35566
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
+-+|++|++++..+. ..|..+.++ +.|.+|++..+.-....+. ....+.+|++|.
T Consensus 594 -Li~LryL~L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 594 -LVHLRYLDLSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPG-ILLELQSLRVLR 648 (889)
T ss_pred -hhhhhcccccCCCcc-ccchHHHHH-Hhhheeccccccccccccc-hhhhcccccEEE
Confidence 677777777777776 567777777 7777777777665444444 555577777776
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=3.1e-08 Score=103.11 Aligned_cols=105 Identities=28% Similarity=0.282 Sum_probs=78.4
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
.++.|+|++|.+.+.. +..+.. +++|+.|+|++|.+.+..+ ..+.. +++|+.|+|++|.+++..|..+..+ +
T Consensus 419 ~v~~L~L~~n~L~g~i--p~~i~~-L~~L~~L~Ls~N~l~g~iP--~~~~~--l~~L~~LdLs~N~lsg~iP~~l~~L-~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI--PNDISK-LRHLQSINLSGNSIRGNIP--PSLGS--ITSLEVLDLSYNSFNGSIPESLGQL-T 490 (623)
T ss_pred EEEEEECCCCCccccC--CHHHhC-CCCCCEEECCCCcccCcCC--hHHhC--CCCCCEEECCCCCCCCCCchHHhcC-C
Confidence 3778888888887653 556666 8888888888888876655 45666 8888888888888888888888888 8
Q ss_pred CCcEEEccCCccccCCChhhhhcC-Ccccccc-ccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNM-TSLASLT-SLN 152 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~-~~n 152 (466)
+|++|+|++|.+.+.+|. .+... .++..++ ..|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~-~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPA-ALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCEEECcCCcccccCCh-HHhhccccCceEEecCC
Confidence 888888888888888887 66543 3445555 444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=8.7e-09 Score=72.45 Aligned_cols=61 Identities=26% Similarity=0.316 Sum_probs=40.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAP 77 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 77 (466)
++|++|++++|+++...+ ..|.++++|++|++++|.++.+ +...+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i---~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSI---PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEE---ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCcc---CHHHHcCCCCCCEEeCcCCcC
Confidence 456777777777776555 6677777777777777777666 333444477777777777653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=1.4e-08 Score=71.44 Aligned_cols=61 Identities=39% Similarity=0.509 Sum_probs=38.3
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l 130 (466)
|+|++|++++|.++.+++ ..+.. +++|++|++++|.++...+..|.++ ++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~--~~f~~--l~~L~~L~l~~N~l~~i~~~~f~~l-~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP--DSFSN--LPNLETLDLSNNNLTSIPPDAFSNL-PNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT--TTTTT--GTTESEEEETSSSESEEETTTTTTS-TTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH--HHHcC--CCCCCEeEccCCccCccCHHHHcCC-CCCCEEeCcCCcC
Confidence 356666666666666555 45555 6666666666666666666666666 6666666666653
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.4e-10 Score=99.57 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=114.2
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCC-cCCC--CC
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITG--IP 193 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~--~~ 193 (466)
+.|++|||++..++.....+.+..+.+|+.|. .++.+.+. +. ..+.+..+|+.|+|+.+ .+++ +.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~----I~-------~~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP----IV-------NTIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH----HH-------HHHhccccceeeccccccccchhHHH
Confidence 45889999988877544443567788888888 77777765 33 56777889999999876 4555 22
Q ss_pred cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCC
Q 047429 194 KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLES 273 (466)
Q Consensus 194 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~ 273 (466)
-.+.+++.|..|++++|.+........... +.++|+.|+++++.=.-.. ..+..-..++++|..|||++
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h----ise~l~~LNlsG~rrnl~~-------sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAH----ISETLTQLNLSGYRRNLQK-------SHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhh----hchhhhhhhhhhhHhhhhh-------hHHHHHHHhCCceeeecccc
Confidence 356788999999999998876554433333 2357888988877421000 01112245678888888888
Q ss_pred CeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhh
Q 047429 274 NQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNN 317 (466)
Q Consensus 274 n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 317 (466)
| +.++......|..++.|++|.++.|- +++|+.+-.
T Consensus 323 ~------v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~ 358 (419)
T KOG2120|consen 323 S------VMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLE 358 (419)
T ss_pred c------cccCchHHHHHHhcchheeeehhhhc--CCChHHeee
Confidence 6 44554555567778888888888776 356665443
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=2.1e-08 Score=88.84 Aligned_cols=222 Identities=19% Similarity=0.177 Sum_probs=148.4
Q ss_pred CCcCCcEEeCCCccccccchHHH----hhcCCCCcEEEccCCCCCCccc--------hHHHHhcCCCCCCEEEcCCCCCC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQW----LSYHNKLTSLSLQGLDLREATD--------WLQVVITGLPSLRELDLSSSAPP 78 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~~~~l~~L~~L~Ls~n~l~ 78 (466)
.+..+..+|||+|.|..... .. ++.-.+|+..+++.--.....+ ....+.+ ||+|+..+||.|.+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~-e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAM-EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCCcccHHHH-HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccC
Confidence 46789999999999986654 44 3455778888888764433211 1334455 999999999999886
Q ss_pred CCCc--cccccccCCCCCccEEEcCCCCCCchhhhhhh-------------cccCCCcEEEccCCccccCCChh----hh
Q 047429 79 KINY--RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS-------------HISKSLVYLDLSNNQLQGPTPDY----AF 139 (466)
Q Consensus 79 ~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-------------~l~~~L~~L~Ls~n~l~~~~~~~----~~ 139 (466)
...+ ....+.. -..|++|.+++|++.......++ .- +.|++.....|++. ..+.. .+
T Consensus 106 ~~~~e~L~d~is~--~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~k-p~Le~vicgrNRle-ngs~~~~a~~l 181 (388)
T COG5238 106 SEFPEELGDLISS--STDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADK-PKLEVVICGRNRLE-NGSKELSAALL 181 (388)
T ss_pred cccchHHHHHHhc--CCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccC-CCceEEEeccchhc-cCcHHHHHHHH
Confidence 5433 1122334 67899999999998754443333 22 77999999999987 33331 12
Q ss_pred hcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCC
Q 047429 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 140 ~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..-..|+++. ..|.|...+...+. ...+..+.+|+.|||..|.++. +..++..++.|+.|.+..|-++
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~------~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLA------FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHH------HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 2224677777 77776554322111 0234567889999999998765 3456677788899999999888
Q ss_pred CccchhhhhccccccccccceEecCCccccc
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
......+...++....++|..|-..+|.+.+
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 7776666555444444678888888887653
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.2e-08 Score=91.54 Aligned_cols=110 Identities=23% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
.++.|.+.++.|....+ ...+....+.++.+||.+|.|+++........+ +|.|+.|+++.|.+...+...=... .
T Consensus 46 a~ellvln~~~id~~gd-~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~--lP~l~~LNls~N~L~s~I~~lp~p~-~ 121 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGD-VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQ--LPALTTLNLSCNSLSSDIKSLPLPL-K 121 (418)
T ss_pred chhhheecCCCCCcchh-HHHHHHHhhhhhhhhcccchhccHHHHHHHHhc--CccceEeeccCCcCCCccccCcccc-c
Confidence 44456666666655543 233333366677777777777666553333444 6777777777776654321111233 5
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccc-ccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n 152 (466)
+|++|-|.+..+.-......+..++.+++|. +.|
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 6677777666654333222344555555555 444
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=7.7e-08 Score=102.66 Aligned_cols=106 Identities=25% Similarity=0.235 Sum_probs=58.6
Q ss_pred cCCcEEeCCCcc--ccccchHHHhhcCCCCcEEEccCCC-CCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 13 EDLQSINIGLNA--IRVRKFDQWLSYHNKLTSLSLQGLD-LREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 13 ~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
++|++|=+..|. +..... .+|..++.|++|||++|. +... |..+.. +-+||+|++++..+..++. .+.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~L---P~~I~~-Li~LryL~L~~t~I~~LP~---~l~~ 616 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSKL---PSSIGE-LVHLRYLDLSDTGISHLPS---GLGN 616 (889)
T ss_pred CccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCcC---ChHHhh-hhhhhcccccCCCccccch---HHHH
Confidence 356666665554 333333 556666666666666552 2333 555555 6666666666666665544 4455
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ 129 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~ 129 (466)
+..|.+|++..+.-...++.....+ .+|++|.+..-.
T Consensus 617 --Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 617 --LKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPRSA 653 (889)
T ss_pred --HHhhheeccccccccccccchhhhc-ccccEEEeeccc
Confidence 5666666666655433344444455 666666665543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1e-08 Score=91.98 Aligned_cols=110 Identities=30% Similarity=0.392 Sum_probs=66.6
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNSSS 92 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l 92 (466)
.|++||||+-.|+....-..++.|.+|+.|.|.++++.+-. ...+.+ -.+|+.|+++.+. ++.... ...+.. +
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAk-N~~L~~lnlsm~sG~t~n~~-~ll~~s--c 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAK-NSNLVRLNLSMCSGFTENAL-QLLLSS--C 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH--HHHHhc-cccceeeccccccccchhHH-HHHHHh--h
Confidence 47777887777764433345667777777777777776542 445555 6778888877664 332221 123344 7
Q ss_pred CCccEEEcCCCCCCchhhh-hhhcccCCCcEEEccCCc
Q 047429 93 SSLTHLHLSLCGLSNSAYH-CLSHISKSLVYLDLSNNQ 129 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~~L~~L~Ls~n~ 129 (466)
+.|..|+++.|.+...... .+.+..++|+.|+++++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 7777777777776543322 223333567777777764
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=8.9e-09 Score=102.66 Aligned_cols=125 Identities=26% Similarity=0.276 Sum_probs=69.6
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
.|.+.+.+.|.+..+.. ++.- ++.++.|+|++|+++.. ..+..+ +.|++|||+.|.+. ..|.....++. |
T Consensus 165 ~L~~a~fsyN~L~~mD~---SLql--l~ale~LnLshNk~~~v--~~Lr~l-~~LkhLDlsyN~L~-~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDE---SLQL--LPALESLNLSHNKFTKV--DNLRRL-PKLKHLDLSYNCLR-HVPQLSMVGCK-L 234 (1096)
T ss_pred hHhhhhcchhhHHhHHH---HHHH--HHHhhhhccchhhhhhh--HHHHhc-ccccccccccchhc-cccccchhhhh-h
Confidence 34455555555544332 2333 55666666666666543 245555 66666666666665 34432223333 6
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc--ccCCCCCcCEEEeeCCcCC
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK--SFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~ 213 (466)
+.|. .+|.++.+ ..+.++++|+.||+++|-+.+..+ .+..+..|+.|.|.+|.+.
T Consensus 235 ~~L~lrnN~l~tL-------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL-------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh-------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666 66666654 456666666667777666655221 2344556666666666654
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=7.3e-07 Score=80.33 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCcEEeCCCccccccchHHHh-hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWL-SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
-++.|-+.++.|..+.....| ..++.+++|||.+|.|+...+ ...+...+|.|++|+++.|.+...... .-.. .
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWse-I~~ile~lP~l~~LNls~N~L~s~I~~--lp~p--~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSE-IGAILEQLPALTTLNLSCNSLSSDIKS--LPLP--L 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHH-HHHHHhcCccceEeeccCCcCCCcccc--Cccc--c
Confidence 444666667777654432334 357889999999999998755 334555599999999999998765441 1134 7
Q ss_pred CCccEEEcCCCCCCchhhhh-hhcccCCCcEEEccCCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHC-LSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~~L~~L~Ls~n~l~ 131 (466)
.+|++|-|.+..+....... +..+ +.++.|.++.|.+.
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~l-P~vtelHmS~N~~r 159 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDL-PKVTELHMSDNSLR 159 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcc-hhhhhhhhccchhh
Confidence 89999999999887544443 4455 88899999998543
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=1.2e-06 Score=56.42 Aligned_cols=37 Identities=38% Similarity=0.589 Sum_probs=31.6
Q ss_pred CCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 365 GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 365 ~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-------------~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-------------DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-------------SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-------------ccCchHhCCCCCCEEEecCCCCC
Confidence 36799999999999 66667899999999999999998
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=2.2e-07 Score=93.01 Aligned_cols=124 Identities=27% Similarity=0.284 Sum_probs=71.2
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
.|.+.+.++|.+.... .++.-++.|+.|||++|+++.. ..+.. +++|++|||+.|.+..++. ..... +
T Consensus 165 ~L~~a~fsyN~L~~mD--~SLqll~ale~LnLshNk~~~v----~~Lr~-l~~LkhLDlsyN~L~~vp~--l~~~g--c- 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD--ESLQLLPALESLNLSHNKFTKV----DNLRR-LPKLKHLDLSYNCLRHVPQ--LSMVG--C- 232 (1096)
T ss_pred hHhhhhcchhhHHhHH--HHHHHHHHhhhhccchhhhhhh----HHHHh-cccccccccccchhccccc--cchhh--h-
Confidence 3555666666665322 5566667777777777777664 13333 7777777777777766654 22222 3
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n 152 (466)
.|..|.+++|.++.. ..+.++ .+|+.||++.|-+.+...-..+..+..|+.|. .+|
T Consensus 233 ~L~~L~lrnN~l~tL--~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTL--RGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hheeeeecccHHHhh--hhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 377777777766543 334555 66777777777665432221334445555555 444
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=3.7e-06 Score=54.22 Aligned_cols=38 Identities=37% Similarity=0.610 Sum_probs=32.2
Q ss_pred CccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCC
Q 047429 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTA 214 (466)
Q Consensus 177 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~ 214 (466)
++|++|++++|+|+.+|..++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 47899999999999988878999999999999999884
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=5.7e-07 Score=71.76 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=17.6
Q ss_pred cCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 286 SATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 286 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
.+|..+..++.|+.|+++.|.+. ..|..+..+.++
T Consensus 91 dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 91 DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 44555555555555555555554 334444444444
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=1e-06 Score=78.37 Aligned_cols=242 Identities=22% Similarity=0.200 Sum_probs=140.7
Q ss_pred HHhhcCCCCcEEEccCCCCCCc-cchHHHHhcCCCCCCEEEcCCCCCCCCCc--------cccccccCCCCCccEEEcCC
Q 047429 32 QWLSYHNKLTSLSLQGLDLREA-TDWLQVVITGLPSLRELDLSSSAPPKINY--------RSHSLVNSSSSSLTHLHLSL 102 (466)
Q Consensus 32 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~~~~~l~~L~~L~Ls~ 102 (466)
..+.-+..+..++||+|-|... ..|.......-.+|+..+++.-....... ...++.. |+.|+..+||+
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk--cp~l~~v~LSD 101 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK--CPRLQKVDLSD 101 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc--CCcceeeeccc
Confidence 3455688899999999998664 22333333336788888887653322111 1123445 78999999999
Q ss_pred CCCCchhhhh----hhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCc
Q 047429 103 CGLSNSAYHC----LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTS 178 (466)
Q Consensus 103 n~l~~~~~~~----l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~ 178 (466)
|.+....|.. +.+. +.|++|.+++|.+. .+...-++ +.|.+|- .| .-...-|.
T Consensus 102 NAfg~~~~e~L~d~is~~-t~l~HL~l~NnGlG-p~aG~rig--kal~~la-~n------------------KKaa~kp~ 158 (388)
T COG5238 102 NAFGSEFPEELGDLISSS-TDLVHLKLNNNGLG-PIAGGRIG--KALFHLA-YN------------------KKAADKPK 158 (388)
T ss_pred cccCcccchHHHHHHhcC-CCceeEEeecCCCC-ccchhHHH--HHHHHHH-HH------------------hhhccCCC
Confidence 9887655544 3444 78999999999875 22221232 1122221 11 11233467
Q ss_pred cCEEecCCCcCCCCCc-----ccCCCCCcCEEEeeCCcCCCccch--hhhhccccccccccceEecCCccccccCCCCcc
Q 047429 179 LMDLDLSKNQITGIPK-----SFGDMCCLKTLKIHDNILTAKLPE--LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~-----~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
|+......|++...+. .+..-..|+.+.+..|.|...... .+..+ ...++|+.||+..|-++-....
T Consensus 159 Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl---~y~~~LevLDlqDNtft~~gS~--- 232 (388)
T COG5238 159 LEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL---FYSHSLEVLDLQDNTFTLEGSR--- 232 (388)
T ss_pred ceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH---HHhCcceeeeccccchhhhhHH---
Confidence 8888888888876442 233345788888888877533221 12222 2235788888888877622111
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCC--CCCCccEEEccCCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC--SSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~ 310 (466)
.+...++..+.|+.|.+..|.+. +.-...+...|. ..|+|..|-..+|.+.+.
T Consensus 233 ---~La~al~~W~~lrEL~lnDClls---~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 233 ---YLADALCEWNLLRELRLNDCLLS---NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred ---HHHHHhcccchhhhccccchhhc---cccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 22334555566788888876551 111111112222 346777777777776543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=1.2e-06 Score=69.93 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=64.8
Q ss_pred CcEEeCCCcccccc--chHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 15 LQSINIGLNAIRVR--KFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 15 L~~L~Ls~n~i~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+..+||+.|.+... .+ ..+....+|+..+|++|.+... +..+...++-+++|++++|.+.+++. .+.. +
T Consensus 29 ~h~ldLssc~lm~i~dav-y~l~~~~el~~i~ls~N~fk~f---p~kft~kf~t~t~lNl~~neisdvPe---E~Aa--m 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAV-YMLSKGYELTKISLSDNGFKKF---PKKFTIKFPTATTLNLANNEISDVPE---ELAA--M 99 (177)
T ss_pred hhhcccccchhhHHHHHH-HHHhCCceEEEEecccchhhhC---CHHHhhccchhhhhhcchhhhhhchH---HHhh--h
Confidence 45566666655421 12 3445556666667777776666 55555546667777777777766654 3555 6
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
+.|+.|+++.|.+. ..|..+..+ .++-.|+..+|...
T Consensus 100 ~aLr~lNl~~N~l~-~~p~vi~~L-~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRVIAPL-IKLDMLDSPENARA 136 (177)
T ss_pred HHhhhcccccCccc-cchHHHHHH-HhHHHhcCCCCccc
Confidence 67777777777765 445555555 66666666666655
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.92 E-value=1.2e-05 Score=68.79 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=26.5
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchh-hhhhhcccCCCcEEEccCCccc
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSA-YHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
++.|.+|.|++|.|+.+.+. --.. +++|+.|.+.+|++.... -..+..+ +.|++|.+-+|.++
T Consensus 63 l~rL~tLll~nNrIt~I~p~--L~~~--~p~l~~L~LtnNsi~~l~dl~pLa~~-p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPD--LDTF--LPNLKTLILTNNSIQELGDLDPLASC-PKLEYLTLLGNPVE 126 (233)
T ss_pred ccccceEEecCCcceeeccc--hhhh--ccccceEEecCcchhhhhhcchhccC-CccceeeecCCchh
Confidence 44455555555555544441 1111 344555555555443210 0122333 44555555555443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=2.7e-05 Score=66.60 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=80.7
Q ss_pred CccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccccc
Q 047429 177 TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF 256 (466)
Q Consensus 177 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l 256 (466)
.+...+||++|.+..+ +.|..++.|.+|.+++|.|+...|..-..+ ++|+.|.|.+|+|.... ++
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~------p~l~~L~LtnNsi~~l~--------dl 106 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFL------PNLKTLILTNNSIQELG--------DL 106 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhc------cccceEEecCcchhhhh--------hc
Confidence 4567889999998775 356788999999999999998877754444 67999999999987221 11
Q ss_pred CcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC
Q 047429 257 PKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN 306 (466)
Q Consensus 257 p~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~ 306 (466)
.-+..|+.|++|.+-+|.+ ++-.+--...++.+|+|+.||...=.
T Consensus 107 -~pLa~~p~L~~Ltll~Npv----~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 -DPLASCPKLEYLTLLGNPV----EHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred -chhccCCccceeeecCCch----hcccCceeEEEEecCcceEeehhhhh
Confidence 2367788999999998876 33322223456788999999987533
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=5e-06 Score=86.76 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=106.8
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCc-------c---chHHHHhc--CCCCCCEEEcCCCCCCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREA-------T---DWLQVVIT--GLPSLRELDLSSSAPPKIN 81 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~---~~~~~~~~--~l~~L~~L~Ls~n~l~~~~ 81 (466)
++...++.+........ ..+.... |++|.|.+...... . .+...+.. .-.+|++||+++...-.-.
T Consensus 61 ~ltki~l~~~~~~~~~~-~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTL-EMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHH-HHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 45566666555544433 3444444 77777766443221 0 01112211 1257888888876532111
Q ss_pred ccccccccCCCCCccEEEcCCCCCCchhh-hhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccc
Q 047429 82 YRSHSLVNSSSSSLTHLHLSLCGLSNSAY-HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISK 159 (466)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~ 159 (466)
-. ..+ +..+|+|+.|.+++-.+...-. ....++ ++|..||+|+++++.. . .++++++|+.|. .+=.+.....
T Consensus 139 W~-~ki-g~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~-GIS~LknLq~L~mrnLe~e~~~~ 212 (699)
T KOG3665|consen 139 WP-KKI-GTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNL--S-GISRLKNLQVLSMRNLEFESYQD 212 (699)
T ss_pred HH-HHH-hhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCc--H-HHhccccHHHHhccCCCCCchhh
Confidence 10 112 2237888888888776643322 223344 8888889998888744 3 677888888876 3322222100
Q ss_pred cCCCccccCccccccCCCccCEEecCCCcCCCCC-------cccCCCCCcCEEEeeCCcCCCccch
Q 047429 160 CSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-------KSFGDMCCLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 160 ~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~ 218 (466)
+ ..+-.+++|++||+|.......+ +.-..+|.|+.||.+++.+.....+
T Consensus 213 --l--------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 213 --L--------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred --H--------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 1 24567889999999987655422 1223478999999998777654444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=6.2e-05 Score=72.74 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=16.4
Q ss_pred CCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCC
Q 047429 176 VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDN 210 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n 210 (466)
+.+++.|++++|.++.+|. -.++|++|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc 82 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENC 82 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCC
Confidence 4555566666555555542 1224555555553
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00035 Score=67.67 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=9.2
Q ss_pred cCCCCcEEEccCCCCCCc
Q 047429 36 YHNKLTSLSLQGLDLREA 53 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~ 53 (466)
.+.+++.|++++|.++.+
T Consensus 50 ~~~~l~~L~Is~c~L~sL 67 (426)
T PRK15386 50 EARASGRLYIKDCDIESL 67 (426)
T ss_pred HhcCCCEEEeCCCCCccc
Confidence 345555555555544444
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=6.7e-05 Score=78.46 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=83.0
Q ss_pred cCCcEEeCCCccccccchHHHh-hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWL-SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
.+|++||+++...-....+..+ ..+|.|+.|.+++-.+.... ...+..++|+|+.||+|+..++.+ ..+..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl----~GIS~-- 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL----SGISR-- 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc----HHHhc--
Confidence 4678888887654333322223 34788888888877665442 345555588888888888877765 23444
Q ss_pred CCCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCccccCC--Ch---hhhhcCCcccccc-ccccccc
Q 047429 92 SSSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQLQGPT--PD---YAFRNMTSLASLT-SLNYITG 156 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~l~~~~--~~---~~~~~l~~L~~L~-~~n~l~~ 156 (466)
+++|++|.+.+=.+.. ..-..+..+ ++|++||+|........ .. ..-..+++|+.|+ +...+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7788888777766653 223345667 88888888876544211 00 0112467788887 7665554
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.37 E-value=1.3e-05 Score=75.61 Aligned_cols=282 Identities=17% Similarity=0.142 Sum_probs=169.0
Q ss_pred cccCCcCCcEEeCCCcc-ccccchHHHhhcCCCCcEEEccCC-CCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccc
Q 047429 8 FHISLEDLQSINIGLNA-IRVRKFDQWLSYHNKLTSLSLQGL-DLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRS 84 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 84 (466)
+-..++++++|++.++. +++......-..+++|++|++..| .++... ...+..++++|++|+++++. +++....
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~--Lk~la~gC~kL~~lNlSwc~qi~~~gv~- 235 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS--LKYLAEGCRKLKYLNLSWCPQISGNGVQ- 235 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH--HHHHHHhhhhHHHhhhccCchhhcCcch-
Confidence 34578999999999885 555555233457899999999996 445442 44566779999999999986 3332211
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhh----cccCCCcEEEccCCc-cccCCChhhhhcCCcccccc-c-ccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLS----HISKSLVYLDLSNNQ-LQGPTPDYAFRNMTSLASLT-S-LNYITGI 157 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~----~l~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~-~-~n~l~~~ 157 (466)
....+ +..++.+.+.+|.-.+. +.+. .. ..+..+++.+|. ++.......-..+..|+.|. + ...+++.
T Consensus 236 ~~~rG--~~~l~~~~~kGC~e~~l--e~l~~~~~~~-~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 236 ALQRG--CKELEKLSLKGCLELEL--EALLKAAAYC-LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred HHhcc--chhhhhhhhcccccccH--HHHHHHhccC-hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 22334 66788887787743221 1221 22 346667766664 33222111223467888888 3 3334433
Q ss_pred cccCCCccccCccccccCCCccCEEecCCCc-CCC--CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccce
Q 047429 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ-ITG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQS 234 (466)
Q Consensus 158 ~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 234 (466)
... .--.+..+|+.|-++.++ ++. +...=.+++.|+.+++..+...... .+..+...+ +.|++
T Consensus 311 ~l~----------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~~C--~~lr~ 376 (483)
T KOG4341|consen 311 VLW----------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSRNC--PRLRV 376 (483)
T ss_pred HHH----------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhccCC--chhcc
Confidence 111 122456899999999986 443 2222346789999999998764222 233332222 56999
Q ss_pred EecCCcccc-ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCC-CCCch
Q 047429 235 FMLQNNMLS-GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNI-SGMVP 312 (466)
Q Consensus 235 L~L~~n~l~-~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p 312 (466)
+.++++... +..-. .+...-..+..|+.+.|+++.. ++......+..+++|+.+++-.++- +....
T Consensus 377 lslshce~itD~gi~------~l~~~~c~~~~l~~lEL~n~p~------i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 377 LSLSHCELITDEGIR------HLSSSSCSLEGLEVLELDNCPL------ITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred CChhhhhhhhhhhhh------hhhhccccccccceeeecCCCC------chHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 999987543 21000 1223345667899999998743 4444556677888999999988762 22222
Q ss_pred hhh-hhhhhhhh
Q 047429 313 TCL-NNLSAMVQ 323 (466)
Q Consensus 313 ~~~-~~l~~L~~ 323 (466)
..| .++++++.
T Consensus 445 ~~~~~~lp~i~v 456 (483)
T KOG4341|consen 445 SRFATHLPNIKV 456 (483)
T ss_pred HHHHhhCcccee
Confidence 222 34555544
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.34 E-value=1.8e-05 Score=74.84 Aligned_cols=277 Identities=18% Similarity=0.115 Sum_probs=164.6
Q ss_pred cCCcEEeCCCccccccchH-HHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccC
Q 047429 13 EDLQSINIGLNAIRVRKFD-QWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNS 90 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~ 90 (466)
..|+.|.+.++.-.+..+. .....+++++.|++.++....... ...+.+.+++|++|++..|. ++...-. .....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~g- 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLK-YLAEG- 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH-HHHHHHhcchhhhhhhcccchhHHHHHH-HHHHh-
Confidence 4588899998875444332 334579999999999996322222 44566669999999999853 4433221 11223
Q ss_pred CCCCccEEEcCCCC-CCchhhhh-hhcccCCCcEEEccCCccccCCChhhh----hcCCcccccc--cccccccccccCC
Q 047429 91 SSSSLTHLHLSLCG-LSNSAYHC-LSHISKSLVYLDLSNNQLQGPTPDYAF----RNMTSLASLT--SLNYITGISKCSL 162 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~-l~~~~~~~-l~~l~~~L~~L~Ls~n~l~~~~~~~~~----~~l~~L~~L~--~~n~l~~~~~~~l 162 (466)
+++|++|+++.|. +++..... +.+. +.++.+.+.+|.=.+ .. .+ +.+..+.+++ +.+.+++.+..
T Consensus 215 -C~kL~~lNlSwc~qi~~~gv~~~~rG~-~~l~~~~~kGC~e~~--le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~-- 287 (483)
T KOG4341|consen 215 -CRKLKYLNLSWCPQISGNGVQALQRGC-KELEKLSLKGCLELE--LE-ALLKAAAYCLEILKLNLQHCNQLTDEDLW-- 287 (483)
T ss_pred -hhhHHHhhhccCchhhcCcchHHhccc-hhhhhhhhccccccc--HH-HHHHHhccChHhhccchhhhccccchHHH--
Confidence 8999999999984 44322222 2334 556777666653211 11 22 1234455555 45566665321
Q ss_pred CccccCccccccCCCccCEEecCCCcC-CC--CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCC
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQI-TG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 239 (466)
..-..+.+|+.|+.+++.- +. +...-.+..+|+.|.++.|+--+... |. .+..+. +.|+.+++.+
T Consensus 288 --------~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft-~l~rn~-~~Le~l~~e~ 355 (483)
T KOG4341|consen 288 --------LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--FT-MLGRNC-PHLERLDLEE 355 (483)
T ss_pred --------HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--hh-hhhcCC-hhhhhhcccc
Confidence 1224577899999988754 33 22233567899999999997422211 11 111122 4699999988
Q ss_pred ccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccccccc----CCCCCCCCCCccEEEccCCCCC-CCchhh
Q 047429 240 NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGS----ATPKLCSSPMLQVLDFSHNNIS-GMVPTC 314 (466)
Q Consensus 240 n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~ 314 (466)
+...- ++++-..-.+++.|+.+.++++.. ++.. ....-+....|..+.|++++.. +..-+.
T Consensus 356 ~~~~~--------d~tL~sls~~C~~lr~lslshce~------itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 356 CGLIT--------DGTLASLSRNCPRLRVLSLSHCEL------ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred cceeh--------hhhHhhhccCCchhccCChhhhhh------hhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 86541 113333456789999999998754 1111 1223356778999999999854 233344
Q ss_pred hhhhhhhhhcC
Q 047429 315 LNNLSAMVQNG 325 (466)
Q Consensus 315 ~~~l~~L~~l~ 325 (466)
+..++.|+.++
T Consensus 422 l~~c~~Leri~ 432 (483)
T KOG4341|consen 422 LSICRNLERIE 432 (483)
T ss_pred HhhCcccceee
Confidence 55556665543
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=3.1e-05 Score=69.45 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=77.9
Q ss_pred cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchh-hhhhh
Q 047429 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSA-YHCLS 114 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~ 114 (466)
.+.+.+.|+..+|++.++ .+...++.|++|.||-|+|+.+.+ +.. |++|++|+|..|.|.... -..+.
T Consensus 17 dl~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p----l~r--CtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP----LQR--CTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh----HHH--HHHHHHHHHHhcccccHHHHHHHh
Confidence 356788899999998876 455559999999999999988754 455 899999999999997643 23567
Q ss_pred cccCCCcEEEccCCccccCCCh----hhhhcCCcccccc
Q 047429 115 HISKSLVYLDLSNNQLQGPTPD----YAFRNMTSLASLT 149 (466)
Q Consensus 115 ~l~~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~ 149 (466)
++ ++|+.|.|..|.-.+..+. ..+.-+++|+.|+
T Consensus 86 nl-psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NL-PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cC-chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77 9999999999987655443 1345577777776
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00018 Score=64.17 Aligned_cols=108 Identities=23% Similarity=0.201 Sum_probs=61.7
Q ss_pred hhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCch-hhhh
Q 047429 34 LSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNS-AYHC 112 (466)
Q Consensus 34 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~ 112 (466)
...+..|+.|++.+.+++... .+.. +++|+.|+++.|.............. +++|++|+++.|++..+ .-..
T Consensus 39 ~d~~~~le~ls~~n~gltt~~----~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~--~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT----NFPK-LPKLKKLELSDNYRRVSGGLEVLAEK--APNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccchhhhhhhccceeecc----cCCC-cchhhhhcccCCcccccccceehhhh--CCceeEEeecCCccccccccch
Confidence 344566777777777766653 2333 77788888888743322221012222 57888888888877631 1123
Q ss_pred hhcccCCCcEEEccCCccccCCC--hhhhhcCCcccccc
Q 047429 113 LSHISKSLVYLDLSNNQLQGPTP--DYAFRNMTSLASLT 149 (466)
Q Consensus 113 l~~l~~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~ 149 (466)
+..+ .+|..|++.+|..+...- ...|.-+++|+.|+
T Consensus 112 l~~l-~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 LKEL-ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhh-cchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 3445 667778887777654211 11344567777776
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.13 E-value=0.0011 Score=54.03 Aligned_cols=124 Identities=16% Similarity=0.215 Sum_probs=54.3
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
..+|.++++|+.+.+.. .+..... ..|..+++|+.+.+.++ +..+ ....+..+++|+.+.+.. .+..... .
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~-~~F~~~~~l~~i~~~~~-~~~i---~~~~F~~~~~l~~i~~~~-~~~~i~~--~ 75 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGE-NAFSNCTSLKSINFPNN-LTSI---GDNAFSNCKSLESITFPN-NLKSIGD--N 75 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-T-TTTTT-TT-SEEEESST-TSCE----TTTTTT-TT-EEEEETS-TT-EE-T--T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeCh-hhccccccccccccccc-cccc---ceeeeecccccccccccc-ccccccc--c
Confidence 44566777777777763 4444444 56777777777777664 5554 333444466677777754 3333333 3
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
.+.. +++|+.+++..+ +.......|.+. +|+.+.+.. .+... +...|.++++|
T Consensus 76 ~F~~--~~~l~~i~~~~~-~~~i~~~~f~~~--~l~~i~~~~-~~~~i-~~~~F~~~~~l 128 (129)
T PF13306_consen 76 AFSN--CTNLKNIDIPSN-ITEIGSSSFSNC--NLKEINIPS-NITKI-EENAFKNCTKL 128 (129)
T ss_dssp TTTT---TTECEEEETTT--BEEHTTTTTT---T--EEE-TT-B-SS-----GGG-----
T ss_pred cccc--cccccccccCcc-ccEEchhhhcCC--CceEEEECC-CccEE-CCccccccccC
Confidence 4554 667777777654 444444455442 566666654 33322 22255555544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=8.9e-05 Score=66.55 Aligned_cols=102 Identities=22% Similarity=0.127 Sum_probs=79.4
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.+.+++.|++.++.++++ .....++.|++|.||-|.|+... .+.. +++|++|+|..|.|.++... ..+.+
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~----pl~r-CtrLkElYLRkN~I~sldEL-~YLkn- 86 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA----PLQR-CTRLKELYLRKNCIESLDEL-EYLKN- 86 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch----hHHH-HHHHHHHHHHhcccccHHHH-HHHhc-
Confidence 356788999999999877 45788999999999999998863 4555 89999999999999887653 44566
Q ss_pred CCCCccEEEcCCCCCCchhhhh-----hhcccCCCcEEE
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHC-----LSHISKSLVYLD 124 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~-----l~~l~~~L~~L~ 124 (466)
+++|+.|-|..|.=.+..+.. +.-+ ++|+.||
T Consensus 87 -lpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 87 -LPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred -CchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 899999999988665544332 3445 8888884
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00076 Score=60.33 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=76.3
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.+..|+.|++.+..++.. ..|..+++|+.|.+|.|.......+..-+.. +|+|++|++++|++..+... .....
T Consensus 41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl-~pl~~- 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTL-RPLKE- 114 (260)
T ss_pred cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCcccccccc-chhhh-
Confidence 456677777777776644 4577899999999999954433222333444 79999999999999875432 45556
Q ss_pred CCCCccEEEcCCCCCCchh--hhhhhcccCCCcEEEccCC
Q 047429 91 SSSSLTHLHLSLCGLSNSA--YHCLSHISKSLVYLDLSNN 128 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~~L~~L~Ls~n 128 (466)
+.+|..|++.+|..+... -..++.++++|++|+-...
T Consensus 115 -l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 -LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred -hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 889999999999877521 1122333388888865544
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.59 E-value=0.009 Score=48.63 Aligned_cols=121 Identities=24% Similarity=0.396 Sum_probs=58.2
Q ss_pred ccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
.+|.++++|+.+.+.. .+..++ ..|..+++|+.+.+..+ +.......|... ++++.+.+.. .+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~------~~l~~i~~~~-~~~------ 70 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNC------KSLESITFPN-NLK------ 70 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-------TT-EEEEETS-TT-------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecc------cccccccccc-ccc------
Confidence 4677777888888764 455543 36777778888888765 554444444333 3577777765 333
Q ss_pred cccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 250 TELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 250 ~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
.++ ..|..+++|+.+++..+ + .......|.++ .|+.+.+.. .+..+...+|.++++|
T Consensus 71 -----~i~~~~F~~~~~l~~i~~~~~-~-------~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 71 -----SIGDNAFSNCTNLKNIDIPSN-I-------TEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -----EE-TTTTTT-TTECEEEETTT---------BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred -----ccccccccccccccccccCcc-c-------cEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 222 34667888888888653 2 22334456676 888888875 5555667788887766
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.33 E-value=2e-05 Score=78.82 Aligned_cols=196 Identities=23% Similarity=0.217 Sum_probs=113.8
Q ss_pred ccEEEcCCCCCCchhhh----hhhcccCCCcEEEccCCccccCCChhhhh----cC-Ccccccc-cccccccccccCCCc
Q 047429 95 LTHLHLSLCGLSNSAYH----CLSHISKSLVYLDLSNNQLQGPTPDYAFR----NM-TSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 95 L~~L~Ls~n~l~~~~~~----~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~----~l-~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
+..|.|.+|.+...... .+... .+|+.|++++|.+.+.... .+. .. ..++.|. ..|.++..+...+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~-~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~- 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGAR-LLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA- 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHH-HHHhhcccchHHHHHHHhhcccccccchHHHH-
Confidence 66677777776643333 33344 6677777777777633222 221 11 3455566 66666666554455
Q ss_pred cccCccccccCCCccCEEecCCCcCCC-----CCcccC----CCCCcCEEEeeCCcCCCccchhhhhccccccccccceE
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFG----DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSF 235 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 235 (466)
..+.....++.++++.|.+.. ++..+. ...++++|.+.+|.++..........+. ..+..+..+
T Consensus 166 ------~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~-~~~~~~~el 238 (478)
T KOG4308|consen 166 ------AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA-SGESLLREL 238 (478)
T ss_pred ------HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh-ccchhhHHH
Confidence 566667788888888887743 233343 4678888999888887444332222211 111225668
Q ss_pred ecCCccccccCCCCcccccccCcccCCC-CCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 236 MLQNNMLSGSLPGVTELDGTFPKQFCRP-SSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 236 ~L~~n~l~~~~~~~~~l~~~lp~~~~~l-~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
++..|.+.+.... .+...+..+ ..++.++++.|.|.-.+ .......+..++.++++.++.|.+..
T Consensus 239 ~l~~n~l~d~g~~------~L~~~l~~~~~~l~~l~l~~nsi~~~~---~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 239 DLASNKLGDVGVE------KLLPCLSVLSETLRVLDLSRNSITEKG---VRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHhcCcchHHHH------HHHHHhcccchhhhhhhhhcCCccccc---hHHHHHHHhhhHHHHHhhcccCcccc
Confidence 8888887633111 223334445 67788888886651100 01233445567788888888888864
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.16 E-value=8.1e-05 Score=74.50 Aligned_cols=191 Identities=27% Similarity=0.314 Sum_probs=81.1
Q ss_pred CcEEEccCCCCCCcc-chHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc--CCC-CCccEEEcCCCCCCchh----hh
Q 047429 40 LTSLSLQGLDLREAT-DWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN--SSS-SSLTHLHLSLCGLSNSA----YH 111 (466)
Q Consensus 40 L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~~l-~~L~~L~Ls~n~l~~~~----~~ 111 (466)
+..|.|.+|.+.... ..........+.|..|++++|.+.+... ..+.. ... ..+++|++..|.++... .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~--~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA--RLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH--HHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 555566666554431 0011222224556666666666553221 11110 001 33455556666555332 22
Q ss_pred hhhcccCCCcEEEccCCccccC----CChhhhh----cCCcccccc-cccccccccccCCCccccCccccccCCCc-cCE
Q 047429 112 CLSHISKSLVYLDLSNNQLQGP----TPDYAFR----NMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTS-LMD 181 (466)
Q Consensus 112 ~l~~l~~~L~~L~Ls~n~l~~~----~~~~~~~----~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~-L~~ 181 (466)
.+... ..++.++++.|.+... .+. .+. ...++++|+ .++.++...+..+. ..+...+. +..
T Consensus 167 ~L~~~-~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~-------~~l~~~~~~~~e 237 (478)
T KOG4308|consen 167 VLEKN-EHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLD-------EVLASGESLLRE 237 (478)
T ss_pred HHhcc-cchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHH-------HHHhccchhhHH
Confidence 33333 5566666666655311 111 111 233445555 44444433222222 23333333 444
Q ss_pred EecCCCcCCC-----CCcccCCC-CCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 182 LDLSKNQITG-----IPKSFGDM-CCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 182 L~Ls~n~l~~-----~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
|++.+|.+.+ +...+..+ +.+++++++.|.+++............+ +.++.+.++.|.+.
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~--~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC--RQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhh--HHHHHhhcccCccc
Confidence 5555555543 12233333 4455555555555544444333332211 24555555555544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0047 Score=33.01 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=13.8
Q ss_pred CccEEEccCCCCCCCchhhhhh
Q 047429 296 MLQVLDFSHNNISGMVPTCLNN 317 (466)
Q Consensus 296 ~L~~L~Ls~N~l~~~~p~~~~~ 317 (466)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56655554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0079 Score=32.13 Aligned_cols=18 Identities=61% Similarity=0.816 Sum_probs=8.7
Q ss_pred cCEEecCCCcCCCCCccc
Q 047429 179 LMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l 196 (466)
|++|++++|.++.+|..|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555554444433
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.91 E-value=0.019 Score=58.32 Aligned_cols=114 Identities=23% Similarity=0.241 Sum_probs=69.6
Q ss_pred cccCCcCCcEEeCCCc-c-cccc--chHHHhhcCCCCcEEEccCCC-CCCccchHHHHhcCCCCCCEEEcCCCC-CCCCC
Q 047429 8 FHISLEDLQSINIGLN-A-IRVR--KFDQWLSYHNKLTSLSLQGLD-LREATDWLQVVITGLPSLRELDLSSSA-PPKIN 81 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n-~-i~~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 81 (466)
....++.|+.|+++++ . +... ........+++|+.|+++++. +++.. ...+...+++|++|.+.++. +++..
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~--l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG--LSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh--HHHHHhhCCCcceEccCCCCccchhH
Confidence 3457789999999873 2 2111 111344567889999999998 55553 44555558899999988887 45443
Q ss_pred ccccccccCCCCCccEEEcCCCCCCch--hhhhhhcccCCCcEEEccC
Q 047429 82 YRSHSLVNSSSSSLTHLHLSLCGLSNS--AYHCLSHISKSLVYLDLSN 127 (466)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~~L~~L~Ls~ 127 (466)
-. ..... ++.|++|++++|..... ........ ++++.|.+..
T Consensus 287 l~-~i~~~--~~~L~~L~l~~c~~~~d~~l~~~~~~c-~~l~~l~~~~ 330 (482)
T KOG1947|consen 287 LV-SIAER--CPSLRELDLSGCHGLTDSGLEALLKNC-PNLRELKLLS 330 (482)
T ss_pred HH-HHHHh--cCcccEEeeecCccchHHHHHHHHHhC-cchhhhhhhh
Confidence 31 12223 78899999998865321 22222333 5555555443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.79 E-value=0.015 Score=28.82 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=5.4
Q ss_pred CCCeeeccCCcCc
Q 047429 402 HLGVVNLSNNNFS 414 (466)
Q Consensus 402 ~L~~L~Ls~N~l~ 414 (466)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=0.015 Score=50.24 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=19.5
Q ss_pred CcEEeCCCccccccchHHHhhcCCCCcEEEccCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD 49 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~ 49 (466)
++.+|-++..|..+.. ..+.+++.++.|.+.+|.
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhheecccc
Confidence 4455656555555555 555556666666665554
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.12 E-value=0.11 Score=28.94 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=13.8
Q ss_pred CCCCCeeeccCCcCcccCCCC
Q 047429 400 LSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 400 l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+++|+.|+|++|+|+ .+|.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777788888777 66654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.12 E-value=0.11 Score=28.94 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=13.8
Q ss_pred CCCCCeeeccCCcCcccCCCC
Q 047429 400 LSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 400 l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+++|+.|+|++|+|+ .+|.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 356777788888777 66654
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.10 E-value=0.14 Score=51.98 Aligned_cols=116 Identities=24% Similarity=0.263 Sum_probs=50.6
Q ss_pred CcCCcEEeCCCcc-ccccchHHHhhcCCCCcEEEccCC-CC-CCccchHHHHhcCCCCCCEEEcCCCC-CCCCCcccccc
Q 047429 12 LEDLQSINIGLNA-IRVRKFDQWLSYHNKLTSLSLQGL-DL-REATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSL 87 (466)
Q Consensus 12 l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~Ls~n-~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 87 (466)
++.|+.|.+..+. +...........+++|+.|+++++ .. .............+++|+.|+++.+. +++..- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l--~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL--SAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH--HHH
Confidence 4555555555552 222211134455566666666552 11 11111112233335566666666555 333222 111
Q ss_pred ccCCCCCccEEEcCCCC-CCchhhhhhhcccCCCcEEEccCCcc
Q 047429 88 VNSSSSSLTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~n~l 130 (466)
.. .+++|++|.+..|. ++...-..+....+.|++|+++++..
T Consensus 265 ~~-~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 AS-RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred Hh-hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 11 14566666655555 44333333322215566666665543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.33 E-value=0.21 Score=27.72 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=16.7
Q ss_pred CCCccEEEccCCCCCCCchhhhh
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLN 316 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~ 316 (466)
+++|++|+|++|+++.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.33 E-value=0.21 Score=27.72 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=16.7
Q ss_pred CCCccEEEccCCCCCCCchhhhh
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLN 316 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~ 316 (466)
+++|++|+|++|+++.+.+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46788888888888866555554
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.92 E-value=0.15 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=10.1
Q ss_pred cCCcEEeCCCccccccch
Q 047429 13 EDLQSINIGLNAIRVRKF 30 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~ 30 (466)
++|++|+|++|.+++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 566677777776665544
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.75 E-value=0.083 Score=28.73 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=12.1
Q ss_pred CCCccEEEccCCCCCCCchhhh
Q 047429 294 SPMLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~ 315 (466)
+++|++|+|++|.|++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777765544443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.03 E-value=0.033 Score=49.21 Aligned_cols=54 Identities=26% Similarity=0.283 Sum_probs=38.0
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
+......+.||++.|++ -..-..|.-++.|..||++.|.+. -.|..++....+.
T Consensus 38 i~~~kr~tvld~~s~r~--------vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~ 91 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRL--------VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETV 91 (326)
T ss_pred hhccceeeeehhhhhHH--------HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHH
Confidence 44456677888888665 223344566677888999988887 6788888877773
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.54 E-value=0.16 Score=44.11 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=33.5
Q ss_pred CCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCc-cccCCChhhhhcCCc
Q 047429 67 LRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQ-LQGPTPDYAFRNMTS 144 (466)
Q Consensus 67 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~ 144 (466)
++.+|-++..|....- ..+.. ++.++.|.+.+|..-+ ..-+.+++..++|+.|++++|. |+..... .+..+++
T Consensus 103 IeaVDAsds~I~~eGl--e~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL--EHLRD--LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKN 177 (221)
T ss_pred EEEEecCCchHHHHHH--HHHhc--cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhh
Confidence 3445555555444333 34444 5555555555553321 1122233333556666666553 3322222 3334444
Q ss_pred cccc
Q 047429 145 LASL 148 (466)
Q Consensus 145 L~~L 148 (466)
|+.|
T Consensus 178 Lr~L 181 (221)
T KOG3864|consen 178 LRRL 181 (221)
T ss_pred hHHH
Confidence 4444
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.91 E-value=0.42 Score=26.51 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=14.5
Q ss_pred CCCCeeeccCCcCcccCCCC
Q 047429 401 SHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 401 ~~L~~L~Ls~N~l~~~ip~~ 420 (466)
++|+.|++++|+|+ .+|+-
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 46788888888887 77763
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=84.24 E-value=11 Score=37.28 Aligned_cols=67 Identities=28% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhh--cccCCCcEEEccCCccccCCCh
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS--HISKSLVYLDLSNNQLQGPTPD 136 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~L~~L~Ls~n~l~~~~~~ 136 (466)
-+.+++++++.|.+.+-.+ ..+.....+ +.++.|..+......+. .--..+.+++++.|.....+|.
T Consensus 164 npr~r~~dls~npi~dkvp--ihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVP--IHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cchhhhhccCCCcccccCC--ccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 4667888888888776655 333332233 66677766543222111 0003578899999988777665
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.51 E-value=0.059 Score=47.68 Aligned_cols=82 Identities=27% Similarity=0.205 Sum_probs=58.3
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l 196 (466)
...+.||++.|++..... .|+-++.+..|+ +.|.+.- +| ..++....++++++.+|..+..|.++
T Consensus 42 kr~tvld~~s~r~vn~~~--n~s~~t~~~rl~~sknq~~~-----~~-------~d~~q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGK--NFSILTRLVRLDLSKNQIKF-----LP-------KDAKQQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred ceeeeehhhhhHHHhhcc--chHHHHHHHHHhccHhhHhh-----Ch-------hhHHHHHHHHHHHhhccchhhCCccc
Confidence 666777777777653322 455666677777 6666553 44 56777777888888888888888888
Q ss_pred CCCCCcCEEEeeCCcCC
Q 047429 197 GDMCCLKTLKIHDNILT 213 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~ 213 (466)
...++++++++-.+.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 88888888888877643
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.32 E-value=1.4 Score=44.27 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=15.2
Q ss_pred CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCC
Q 047429 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSS 75 (466)
Q Consensus 38 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 75 (466)
+.+..++|++|++..+.. ...+....|+|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~-~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDA-LSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhh-hhHHHHhcchhheeecccc
Confidence 334444444444444322 2222222444444444444
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.66 E-value=2.2 Score=24.16 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=9.8
Q ss_pred cCCcEEeCCCccccccc
Q 047429 13 EDLQSINIGLNAIRVRK 29 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~ 29 (466)
++|++|||++|.+....
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 35666666666665433
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.04 E-value=2.7 Score=23.41 Aligned_cols=16 Identities=50% Similarity=0.596 Sum_probs=8.5
Q ss_pred CCCCEEEcCCCCCCCC
Q 047429 65 PSLRELDLSSSAPPKI 80 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~ 80 (466)
.+|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3555555555555443
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.42 E-value=60 Score=32.46 Aligned_cols=247 Identities=17% Similarity=0.011 Sum_probs=115.1
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCc----hhhhh--
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSN----SAYHC-- 112 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~-- 112 (466)
.+++++|+.|.......-...+...-..++.++.+...+.-.... ..+...+-+.+...+++.|.... ..+..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~-~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k 293 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLT-SPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEK 293 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcc-cccccccccccchhhhccCCCCcccccccccccc
Confidence 477788888776554200111111134566677766654322211 22222224567777777665431 11222
Q ss_pred --hhcccCCCcEEEccCCccccCCChhhhhcCC---cc--cccc-cccccccccccCCCccccCccccccCCCccCEEec
Q 047429 113 --LSHISKSLVYLDLSNNQLQGPTPDYAFRNMT---SL--ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDL 184 (466)
Q Consensus 113 --l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~---~L--~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~L 184 (466)
+..- .++ +|++..+......+...+-.+. .. -.++ ..|...+... + .+-..=..+++|.+
T Consensus 294 ~~fS~~-~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v--l--------eaci~g~R~q~l~~ 361 (553)
T KOG4242|consen 294 DTFSPD-PSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV--L--------EACIFGQRVQVLLQ 361 (553)
T ss_pred cccCcC-ccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch--h--------hccccceeeeEeec
Confidence 2222 455 6666665543322221111110 00 1222 2222222110 0 11112234888888
Q ss_pred CCCcCCC-CCc--ccCCCCCcCEEEeeCCcCCCcc-chhhhhc--cccccccccceEecCCccccccCCCCcccccccCc
Q 047429 185 SKNQITG-IPK--SFGDMCCLKTLKIHDNILTAKL-PELFLNF--SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK 258 (466)
Q Consensus 185 s~n~l~~-~~~--~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~ 258 (466)
..|.+.+ ... ....-++.+.+++..-.-.... +...... .......-+..+.++.+.+..... ....
T Consensus 362 rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~-------s~in 434 (553)
T KOG4242|consen 362 RDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLE-------SAIN 434 (553)
T ss_pred cccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHH-------HHHH
Confidence 8887766 211 3444567777777654321111 1100000 000000126777788777652211 2223
Q ss_pred ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 259 QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
....-+.+..|++++|.+ ++.-...+|.....-.+++....+.|..+
T Consensus 435 ~l~stqtl~kldisgn~m---gd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGM---GDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCc---ccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 344557788899999887 22222345666666667787777777765
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.45 E-value=11 Score=20.67 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=5.5
Q ss_pred cCCcEEeCCCc
Q 047429 13 EDLQSINIGLN 23 (466)
Q Consensus 13 ~~L~~L~Ls~n 23 (466)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.60 E-value=11 Score=38.21 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=43.3
Q ss_pred HhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCC--CCCchhhhhhhcc-cCCCcEEEccCCccccC
Q 047429 60 VITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLC--GLSNSAYHCLSHI-SKSLVYLDLSNNQLQGP 133 (466)
Q Consensus 60 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~l-~~~L~~L~Ls~n~l~~~ 133 (466)
+....+.+..+.|++|++..+......... .++|+.|+|++| .+... ..+.++ ...|++|-+.+|.+...
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~--apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQI--APKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHh--cchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 334477888888888888776553221222 678889999988 33321 222221 04688888888887643
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.83 E-value=25 Score=42.81 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=25.9
Q ss_pred ECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 371 DLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 371 ~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
||++|+|+ .||.. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g-----------~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEG-----------ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChH-----------HhccCCCceEEEeeCCccc
Confidence 68899998 56544 3778899999999999875
Done!