Query 047429
Match_columns 466
No_of_seqs 354 out of 2946
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-42 1.3E-46 367.2 26.0 354 12-433 293-736 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-41 7.2E-46 361.5 22.1 384 10-420 197-699 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.8E-38 6.2E-43 330.8 25.2 419 6-456 50-575 (606)
4 4eco_A Uncharacterized protein 100.0 9.7E-38 3.3E-42 326.0 16.2 362 13-422 81-586 (636)
5 3v47_A TOLL-like receptor 5B a 100.0 1.2E-36 4.1E-41 305.9 23.3 378 13-455 30-423 (455)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.6E-37 1.6E-41 320.1 18.4 411 7-454 50-571 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 4.4E-36 1.5E-40 316.9 22.6 203 6-218 42-290 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 5.5E-36 1.9E-40 309.7 21.8 396 7-456 46-547 (570)
9 3t6q_A CD180 antigen; protein- 100.0 2.2E-35 7.4E-40 307.5 22.0 370 13-420 33-495 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 7.4E-35 2.5E-39 310.1 26.1 334 29-421 440-825 (876)
11 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-35 1.3E-39 300.0 21.8 386 13-456 21-497 (520)
12 3v47_A TOLL-like receptor 5B a 100.0 5E-35 1.7E-39 294.2 21.2 354 6-420 47-414 (455)
13 4eco_A Uncharacterized protein 100.0 8.2E-35 2.8E-39 303.9 22.2 330 5-414 239-600 (636)
14 3j0a_A TOLL-like receptor 5; m 100.0 1E-34 3.5E-39 313.0 20.5 289 11-328 22-371 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-35 1.2E-39 302.3 15.5 78 362-455 448-525 (549)
16 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-33 7.3E-38 296.4 28.4 289 13-329 25-363 (680)
17 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-34 1.6E-38 297.5 23.1 180 13-213 32-217 (606)
18 2id5_A Lingo-1, leucine rich r 100.0 4.5E-34 1.5E-38 288.9 21.6 300 13-415 32-334 (477)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-34 1.9E-38 294.1 22.4 367 13-454 52-524 (562)
20 2z63_A TOLL-like receptor 4, v 100.0 6.9E-34 2.3E-38 294.0 23.1 366 13-420 28-489 (570)
21 4g8a_A TOLL-like receptor 4; l 100.0 8.9E-34 3E-38 296.6 24.2 411 14-456 53-595 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 9.1E-34 3.1E-38 301.7 22.5 348 13-420 323-801 (876)
23 4fmz_A Internalin; leucine ric 100.0 1.9E-32 6.4E-37 265.4 29.2 311 4-414 35-346 (347)
24 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-32 9.8E-37 278.7 25.9 324 6-416 38-483 (520)
25 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-33 2.9E-37 298.0 22.7 247 5-274 40-348 (844)
26 3o6n_A APL1; leucine-rich repe 100.0 5.2E-33 1.8E-37 273.7 18.7 310 11-415 43-353 (390)
27 3o6n_A APL1; leucine-rich repe 100.0 6.9E-32 2.4E-36 265.7 25.0 291 6-379 62-353 (390)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-32 1.4E-36 280.0 24.0 332 6-418 69-514 (562)
29 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-32 4.6E-37 283.1 19.4 359 6-418 43-514 (549)
30 1o6v_A Internalin A; bacterial 100.0 3.5E-31 1.2E-35 266.8 28.5 328 5-415 60-389 (466)
31 2id5_A Lingo-1, leucine rich r 100.0 1.2E-31 4E-36 271.2 23.6 274 6-323 49-324 (477)
32 3oja_B Anopheles plasmodium-re 100.0 2E-31 6.8E-36 276.7 25.0 310 11-415 49-359 (597)
33 3oja_B Anopheles plasmodium-re 100.0 3.5E-32 1.2E-36 282.3 19.2 289 36-416 49-339 (597)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.1E-31 2.1E-35 263.4 26.6 341 4-420 33-393 (457)
35 4g8a_A TOLL-like receptor 4; l 100.0 6.4E-31 2.2E-35 275.0 24.1 350 5-415 68-581 (635)
36 1o6v_A Internalin A; bacterial 100.0 2E-30 6.7E-35 261.3 26.3 327 10-418 43-370 (466)
37 3bz5_A Internalin-J, INLJ; leu 100.0 3.4E-30 1.2E-34 258.0 24.5 307 4-382 55-391 (457)
38 1xku_A Decorin; proteoglycan, 100.0 6E-30 2E-34 246.1 25.1 299 13-412 31-330 (330)
39 4fmz_A Internalin; leucine ric 100.0 1.5E-29 5.1E-34 245.0 26.9 290 3-378 56-346 (347)
40 2ft3_A Biglycan; proteoglycan, 100.0 6.2E-30 2.1E-34 246.1 20.6 297 14-412 34-331 (332)
41 1jl5_A Outer protein YOPM; leu 100.0 1.4E-30 4.6E-35 260.7 15.9 167 7-213 28-208 (454)
42 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-30 4.1E-35 248.8 14.6 250 65-415 50-306 (313)
43 1xku_A Decorin; proteoglycan, 100.0 1.4E-28 4.8E-33 236.5 24.9 258 13-321 52-321 (330)
44 1ogq_A PGIP-2, polygalacturona 100.0 7.6E-30 2.6E-34 243.2 15.8 243 93-430 50-297 (313)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-28 5.2E-33 236.4 22.4 258 13-322 54-323 (332)
46 1jl5_A Outer protein YOPM; leu 100.0 1.6E-28 5.4E-33 245.7 16.9 222 5-276 4-249 (454)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-30 5.5E-35 261.6 1.8 351 9-416 24-413 (461)
48 2z80_A TOLL-like receptor 2, v 99.9 4.8E-28 1.6E-32 235.0 13.2 276 37-417 30-317 (353)
49 1z7x_W Ribonuclease inhibitor; 99.9 2.6E-29 8.8E-34 252.9 2.4 346 12-415 2-384 (461)
50 2z66_A Variable lymphocyte rec 99.9 1.2E-26 4.2E-31 220.5 20.2 248 41-415 10-262 (306)
51 4fcg_A Uncharacterized protein 99.9 1.4E-26 4.9E-31 221.9 18.6 225 37-322 80-304 (328)
52 2z80_A TOLL-like receptor 2, v 99.9 4E-27 1.4E-31 228.4 14.5 272 11-321 29-303 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-26 2.2E-30 233.9 24.0 262 13-419 40-302 (622)
54 4fcg_A Uncharacterized protein 99.9 2.7E-26 9.1E-31 220.1 18.8 225 64-414 80-314 (328)
55 3zyj_A Leucine-rich repeat-con 99.9 8.1E-26 2.8E-30 225.9 22.9 245 67-414 45-292 (440)
56 3zyi_A Leucine-rich repeat-con 99.9 9E-26 3.1E-30 226.4 22.7 245 67-414 56-303 (452)
57 2z66_A Variable lymphocyte rec 99.9 2E-26 6.9E-31 219.0 16.9 251 16-311 10-264 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.9 9.7E-28 3.3E-32 229.2 6.1 224 14-318 11-236 (317)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-25 4.3E-30 211.2 18.5 211 41-321 14-227 (285)
60 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-26 6E-31 220.4 11.6 236 9-325 30-268 (317)
61 1ozn_A Reticulon 4 receptor; N 99.9 9.5E-26 3.2E-30 212.1 16.3 228 15-312 13-242 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 3.5E-25 1.2E-29 221.3 21.3 248 14-309 44-293 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 221.9 21.0 248 14-309 55-304 (452)
64 1wwl_A Monocyte differentiatio 99.9 7.5E-27 2.6E-31 222.5 5.8 257 6-310 36-311 (312)
65 3oja_A Leucine-rich immune mol 99.9 9.8E-26 3.4E-30 227.6 11.1 230 39-325 35-268 (487)
66 1wwl_A Monocyte differentiatio 99.9 1.6E-26 5.4E-31 220.3 4.7 238 33-321 38-298 (312)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-23 4.8E-28 216.5 24.7 246 13-388 61-307 (622)
68 3oja_A Leucine-rich immune mol 99.9 8.5E-25 2.9E-29 220.8 14.2 233 65-409 34-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 2.4E-23 8.2E-28 194.7 18.4 206 66-312 29-241 (276)
70 3goz_A Leucine-rich repeat-con 99.9 1E-24 3.6E-29 212.1 5.4 276 17-317 2-306 (362)
71 2z62_A TOLL-like receptor 4, v 99.9 4.9E-23 1.7E-27 192.5 15.1 205 14-245 29-239 (276)
72 3rfs_A Internalin B, repeat mo 99.9 7.3E-23 2.5E-27 190.9 15.8 181 8-213 36-218 (272)
73 3goz_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 211.0 4.0 110 42-157 2-124 (362)
74 3rfs_A Internalin B, repeat mo 99.9 2E-23 6.7E-28 194.8 11.1 229 13-321 19-248 (272)
75 3ogk_B Coronatine-insensitive 99.9 2.9E-24 9.8E-29 222.9 5.8 188 11-213 110-306 (592)
76 1p9a_G Platelet glycoprotein I 99.9 5.3E-22 1.8E-26 186.6 19.6 45 174-218 74-118 (290)
77 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.7E-27 193.5 10.6 234 37-309 63-308 (310)
78 2o6q_A Variable lymphocyte rec 99.9 2.4E-21 8.1E-26 180.4 19.0 201 40-310 18-220 (270)
79 2o6q_A Variable lymphocyte rec 99.9 5.4E-21 1.9E-25 178.0 21.2 197 66-329 17-215 (270)
80 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.4E-26 184.0 16.6 108 9-131 6-113 (290)
81 2ca6_A RAN GTPase-activating p 99.9 4.3E-23 1.5E-27 202.5 5.3 252 32-312 26-320 (386)
82 2ca6_A RAN GTPase-activating p 99.9 2.7E-23 9.3E-28 204.0 3.3 256 7-276 26-315 (386)
83 1h6u_A Internalin H; cell adhe 99.9 3.9E-21 1.3E-25 182.5 17.1 190 36-276 39-229 (308)
84 4glp_A Monocyte differentiatio 99.9 6.2E-22 2.1E-26 188.3 11.0 227 93-415 64-308 (310)
85 3ogk_B Coronatine-insensitive 99.9 6.5E-23 2.2E-27 212.7 4.5 337 10-416 161-528 (592)
86 2ast_B S-phase kinase-associat 99.9 2.5E-22 8.6E-27 193.2 7.9 200 39-306 48-258 (336)
87 2p1m_B Transport inhibitor res 99.9 7.2E-23 2.5E-27 212.4 2.0 282 10-328 102-441 (594)
88 2ast_B S-phase kinase-associat 99.9 3.5E-22 1.2E-26 192.2 6.4 223 13-305 47-282 (336)
89 1h6u_A Internalin H; cell adhe 99.8 1.4E-20 4.9E-25 178.6 16.2 208 43-310 24-232 (308)
90 2xwt_C Thyrotropin receptor; s 99.8 8.8E-21 3E-25 173.3 13.3 184 66-313 32-223 (239)
91 4ay9_X Follicle-stimulating ho 99.8 1.1E-20 3.7E-25 182.8 14.3 217 68-325 12-232 (350)
92 2xwt_C Thyrotropin receptor; s 99.8 5.4E-20 1.9E-24 168.0 12.8 198 38-305 31-236 (239)
93 3m19_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 166.2 15.8 178 14-215 15-194 (251)
94 3m19_A Variable lymphocyte rec 99.8 4.4E-19 1.5E-23 163.2 18.6 181 65-312 14-196 (251)
95 4ay9_X Follicle-stimulating ho 99.8 2.1E-19 7.2E-24 173.8 14.1 240 16-305 12-256 (350)
96 2p1m_B Transport inhibitor res 99.8 4.6E-21 1.6E-25 198.8 2.4 339 11-414 128-519 (594)
97 1h6t_A Internalin B; cell adhe 99.8 8.5E-19 2.9E-23 164.9 15.5 186 17-244 28-214 (291)
98 3cvr_A Invasion plasmid antige 99.8 1.9E-18 6.5E-23 176.1 16.9 189 66-321 60-256 (571)
99 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.2E-23 163.1 13.8 99 95-213 26-125 (291)
100 2o6s_A Variable lymphocyte rec 99.8 2.3E-18 7.9E-23 153.6 13.9 62 65-131 28-89 (208)
101 3cvr_A Invasion plasmid antige 99.8 5.8E-18 2E-22 172.5 17.7 186 94-388 60-253 (571)
102 2o6s_A Variable lymphocyte rec 99.8 4.5E-18 1.5E-22 151.7 12.4 172 16-247 10-182 (208)
103 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-17 4.2E-22 150.2 13.6 154 179-415 13-167 (220)
104 1m9s_A Internalin B; cell inva 99.7 1E-17 3.5E-22 172.5 14.9 174 7-214 37-211 (605)
105 2v9t_B SLIT homolog 2 protein 99.7 2.3E-17 7.9E-22 148.4 15.1 152 180-414 14-165 (220)
106 1xeu_A Internalin C; cellular 99.7 1E-17 3.6E-22 155.0 11.7 108 172-310 36-143 (263)
107 4ezg_A Putative uncharacterize 99.7 9E-18 3.1E-22 148.4 10.7 152 35-213 41-194 (197)
108 2xot_A Amphoterin-induced prot 99.7 1.5E-17 5.2E-22 161.3 12.2 174 41-243 21-202 (361)
109 2xot_A Amphoterin-induced prot 99.7 4.6E-18 1.6E-22 165.0 8.2 107 179-309 41-150 (361)
110 4ezg_A Putative uncharacterize 99.7 2.3E-17 7.8E-22 145.8 11.6 155 173-415 40-195 (197)
111 1m9s_A Internalin B; cell inva 99.7 3.4E-17 1.2E-21 168.6 14.4 190 12-243 20-210 (605)
112 3e6j_A Variable lymphocyte rec 99.7 1.6E-16 5.3E-21 143.9 16.7 154 178-416 20-174 (229)
113 1xeu_A Internalin C; cellular 99.7 6.7E-18 2.3E-22 156.3 7.7 171 11-216 17-188 (263)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 5.9E-17 2E-21 145.7 12.7 155 41-217 14-170 (220)
115 4b8c_D Glucose-repressible alc 99.7 7.6E-18 2.6E-22 177.7 7.4 185 171-418 218-408 (727)
116 1dce_A Protein (RAB geranylger 99.7 1.9E-19 6.5E-24 184.3 -5.7 30 118-149 349-378 (567)
117 3e6j_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 141.5 15.2 153 40-216 21-175 (229)
118 2v9t_B SLIT homolog 2 protein 99.7 3.2E-16 1.1E-20 140.9 14.5 149 41-212 14-164 (220)
119 1dce_A Protein (RAB geranylger 99.6 1.6E-18 5.6E-23 177.4 -6.7 189 140-419 346-551 (567)
120 4b8c_D Glucose-repressible alc 99.6 1.6E-16 5.4E-21 167.6 6.9 180 92-308 223-404 (727)
121 3sb4_A Hypothetical leucine ri 99.6 5.4E-17 1.8E-21 155.4 2.0 266 12-325 24-327 (329)
122 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.8E-20 129.6 9.3 98 260-420 67-165 (168)
123 1w8a_A SLIT protein; signaling 99.6 2.9E-15 9.9E-20 131.6 10.4 118 179-321 10-128 (192)
124 1w8a_A SLIT protein; signaling 99.6 8.8E-15 3E-19 128.5 12.5 130 146-312 11-143 (192)
125 2wfh_A SLIT homolog 2 protein 99.6 1.8E-14 6.2E-19 126.5 11.9 116 180-321 13-128 (193)
126 2ell_A Acidic leucine-rich nuc 99.6 8.1E-15 2.8E-19 125.8 9.3 131 64-243 23-160 (168)
127 3sb4_A Hypothetical leucine ri 99.5 4.3E-15 1.5E-19 142.1 7.6 248 12-302 48-328 (329)
128 2je0_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 119.0 10.1 128 10-149 14-146 (149)
129 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4.1E-19 122.0 6.9 126 176-326 16-147 (149)
130 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 118.8 13.6 117 179-321 9-126 (177)
131 2o6r_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 118.5 12.4 133 201-418 8-141 (177)
132 2wfh_A SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 118.6 13.6 128 146-310 13-141 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.5 6.7E-14 2.3E-18 121.0 8.5 136 197-414 16-153 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.5 7E-14 2.4E-18 120.9 7.0 105 178-308 43-153 (176)
135 3un9_A NLR family member X1; l 99.4 9E-15 3.1E-19 141.8 0.1 91 37-132 71-169 (372)
136 4fdw_A Leucine rich hypothetic 99.4 2.4E-12 8.1E-17 126.0 17.1 253 9-319 109-369 (401)
137 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 111.5 12.7 107 231-415 10-116 (170)
138 2r9u_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 110.7 12.7 104 232-414 14-118 (174)
139 4fs7_A Uncharacterized protein 99.4 5.3E-12 1.8E-16 123.7 15.2 311 7-411 65-376 (394)
140 4fdw_A Leucine rich hypothetic 99.4 1E-11 3.6E-16 121.4 16.8 247 6-308 129-383 (401)
141 1ds9_A Outer arm dynein; leuci 99.4 5.4E-15 1.9E-19 130.6 -6.4 127 171-325 42-180 (198)
142 1ds9_A Outer arm dynein; leuci 99.3 3E-14 1E-18 125.8 -3.4 108 92-217 47-157 (198)
143 3un9_A NLR family member X1; l 99.3 7.2E-14 2.5E-18 135.5 -1.8 68 64-133 71-141 (372)
144 3g39_A Variable lymphocyte rec 99.3 2.2E-11 7.5E-16 104.4 12.6 109 178-312 10-119 (170)
145 2r9u_A Variable lymphocyte rec 99.3 2.9E-11 9.9E-16 104.0 12.9 107 179-311 14-121 (174)
146 4fs7_A Uncharacterized protein 99.3 7.1E-11 2.4E-15 115.7 16.0 299 25-420 59-360 (394)
147 4gt6_A Cell surface protein; l 99.1 1.6E-09 5.4E-14 106.1 16.4 110 259-413 260-369 (394)
148 2ifg_A High affinity nerve gro 99.1 2.3E-10 7.9E-15 109.9 9.6 69 234-321 12-82 (347)
149 4gt6_A Cell surface protein; l 99.0 1.4E-08 4.9E-13 99.2 17.6 314 8-413 58-390 (394)
150 2ifg_A High affinity nerve gro 99.0 2.2E-09 7.5E-14 103.1 11.0 105 181-310 12-118 (347)
151 2ra8_A Uncharacterized protein 98.8 7.7E-09 2.6E-13 99.3 6.5 106 13-127 107-228 (362)
152 4h09_A Hypothetical leucine ri 98.7 7.5E-07 2.6E-11 86.4 18.6 273 6-323 39-314 (379)
153 1io0_A Tropomodulin; LRR prote 98.6 1.9E-09 6.5E-14 93.6 -2.4 127 171-308 30-164 (185)
154 1io0_A Tropomodulin; LRR prote 98.6 2.2E-08 7.5E-13 86.8 4.4 120 8-131 31-164 (185)
155 2ra8_A Uncharacterized protein 98.6 8.2E-09 2.8E-13 99.1 1.4 185 9-241 135-341 (362)
156 4h09_A Hypothetical leucine ri 98.6 2.7E-06 9.1E-11 82.5 17.9 270 5-329 61-343 (379)
157 3rw6_A Nuclear RNA export fact 98.4 2E-07 7E-12 84.9 5.7 81 64-149 169-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.3E-12 86.3 2.1 110 9-124 137-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 4.3E-07 1.5E-11 76.9 2.3 85 39-129 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.8E-06 6.1E-11 73.1 2.3 86 14-106 62-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 8.9E-07 3E-11 76.4 -2.1 125 172-308 36-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 6.6E-05 2.3E-09 64.7 6.5 116 11-130 39-169 (197)
163 3rfe_A Platelet glycoprotein I 96.1 0.013 4.4E-07 46.8 6.7 54 181-242 12-67 (130)
164 3rfe_A Platelet glycoprotein I 95.9 0.017 5.8E-07 46.1 6.7 55 69-131 12-68 (130)
165 2lz0_A Uncharacterized protein 29.5 52 0.0018 24.1 3.7 40 258-305 14-53 (100)
166 2lz0_A Uncharacterized protein 27.4 35 0.0012 25.1 2.4 46 25-75 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-42 Score=367.22 Aligned_cols=354 Identities=27% Similarity=0.354 Sum_probs=245.1
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc--
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN-- 89 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-- 89 (466)
+++|++|++++|.+++..| ..+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++..+ ..+..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~i--p~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~ 367 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGEL--PMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLS 367 (768)
T ss_dssp CTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEEC--CHHHHTTCTTCCEEECCSSEEEECCC--TTHHHHT
T ss_pred cCcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcC--CHHHHhcCCCCCEEeCcCCccCcccc--HHHHhhh
Confidence 3777777777777766666 66777777777777777665321 33322336777777777776653333 22332
Q ss_pred -----------------------CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc
Q 047429 90 -----------------------SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146 (466)
Q Consensus 90 -----------------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 146 (466)
..+++|++|++++|.+++..|..+..+ ++|++|++++|.+.+..|. .++.+++|+
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~ 445 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPS-SLGSLSKLR 445 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCG-GGGGCTTCC
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccH-HHhcCCCCC
Confidence 113345555555555555555555555 5666666666666555555 555666666
Q ss_pred ccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 147 ~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
.|+ +.|.+++. +| ..+..+++|++|++++|.+++ +|..+.++++|++|++++|++++.+|..+..+
T Consensus 446 ~L~L~~n~l~~~----~p-------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l- 513 (768)
T 3rgz_A 446 DLKLWLNMLEGE----IP-------QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL- 513 (768)
T ss_dssp EEECCSSCCCSC----CC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-
T ss_pred EEECCCCcccCc----CC-------HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC-
Confidence 666 55555544 44 555666666666666666665 56666666666666666666666666655544
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeee---------------------------
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLW--------------------------- 277 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~--------------------------- 277 (466)
++|++|++++|+++| .+|..+..+++|++|++++|.+.
T Consensus 514 -----~~L~~L~L~~N~l~~----------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 514 -----ENLAILKLSNNSFSG----------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp -----TTCCEEECCSSCCEE----------ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred -----CCCCEEECCCCcccC----------cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 456666666666663 55677888899999999988762
Q ss_pred ------------------------------------eecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 278 ------------------------------------LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 278 ------------------------------------l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
++.+.+.|.+|..+..+++|++|||++|+++|.+|..|++++.|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 01145556677788889999999999999999999999999999
Q ss_pred hhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCC
Q 047429 322 VQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLS 401 (466)
Q Consensus 322 ~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~ 401 (466)
+.|+++++.. .+..+..++.++.|+.|||++|+++| .+|.++..++
T Consensus 659 ~~L~Ls~N~l----------------------~g~ip~~l~~L~~L~~LdLs~N~l~g------------~ip~~l~~l~ 704 (768)
T 3rgz_A 659 FILNLGHNDI----------------------SGSIPDEVGDLRGLNILDLSSNKLDG------------RIPQAMSALT 704 (768)
T ss_dssp CEEECCSSCC----------------------CSCCCGGGGGCTTCCEEECCSSCCEE------------CCCGGGGGCC
T ss_pred CEEeCcCCcc----------------------CCCCChHHhCCCCCCEEECCCCcccC------------cCChHHhCCC
Confidence 9998655533 34556677889999999999999997 5566789999
Q ss_pred CCCeeeccCCcCcccCCCCCCccccccccccc
Q 047429 402 HLGVVNLSNNNFSGKIPSSIPLQTFEASAYKN 433 (466)
Q Consensus 402 ~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~ 433 (466)
+|++||+++|+++|.||+..++.++...+|..
T Consensus 705 ~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736 (768)
T ss_dssp CCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred CCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence 99999999999999999999999998888754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-41 Score=361.50 Aligned_cols=384 Identities=25% Similarity=0.305 Sum_probs=217.8
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc-----
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS----- 84 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----- 84 (466)
.++++|++|++++|.+.+..+ . +..+++|++|++++|.+++.. +..+.. +++|++|++++|.+++..+..
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~l~~L 271 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDF--SRAIST-CTELKLLNISSNQFVGPIPPLPLKSL 271 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCH--HHHTTT-CSSCCEEECCSSCCEESCCCCCCTTC
T ss_pred ccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcc--cHHHhc-CCCCCEEECCCCcccCccCccccCCC
Confidence 455566666666666555443 2 555566666666666555431 333333 555555555555554322210
Q ss_pred ---------------cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 85 ---------------HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 85 ---------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
..+.. .+++|++|++++|.+++..|..+..+ ++|++|++++|.+.+.+|...+..+++|++|+
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp CEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGC-TTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcC-CCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 11211 02556666666666655555566665 66666666666665555552356666666666
Q ss_pred -cccccccccccCCCcccc------------------CccccccC--CCccCEEecCCCcCCC-CCcccCCCCCcCEEEe
Q 047429 150 -SLNYITGISKCSLPITLV------------------RPKYAFSN--VTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKI 207 (466)
Q Consensus 150 -~~n~l~~~~~~~l~~~~~------------------~~~~~l~~--l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L 207 (466)
+.|.+++. +|..+. ..+..+.. +++|++|++++|.+++ +|..+.++++|++|++
T Consensus 350 Ls~n~l~~~----~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 350 LSFNEFSGE----LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp CCSSEEEEC----CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred CcCCccCcc----ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 66655533 331000 00011111 3344444444444443 4444455555555555
Q ss_pred eCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee-----------
Q 047429 208 HDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------- 276 (466)
Q Consensus 208 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------- 276 (466)
++|.+++..|..+..+ ++|+.|++++|.+++ .+|..+..+++|++|++++|++
T Consensus 426 s~N~l~~~~p~~l~~l------~~L~~L~L~~n~l~~----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSL------SKLRDLKLWLNMLEG----------EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CSSEEESCCCGGGGGC------TTCCEEECCSSCCCS----------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCCcccCcccHHHhcC------CCCCEEECCCCcccC----------cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 5555554444444333 345555555555543 3344444455555555555443
Q ss_pred ------eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceee--eeeeccCCCCc---cc
Q 047429 277 ------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVE--YRIQLIDDPEF---DY 345 (466)
Q Consensus 277 ------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~--~~~~~~~~~~~---~~ 345 (466)
++++|++++.+|.+++.+++|++|+|++|++++.+|..++++++|+.|+++++... .+..+...... ..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 24446666777777777777888888877777777777777777777774443221 11111110000 00
Q ss_pred -------------------------------------------ccceeeeeecccchhhhccCCCcEEECCCCcCCcCCc
Q 047429 346 -------------------------------------------QDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIP 382 (466)
Q Consensus 346 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip 382 (466)
.......+.+..+..++.++.|+.|||++|+++|.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 0000122333344456678899999999999999999
Q ss_pred HHHHhh------------ccCCCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 383 EEITSL------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 383 ~~i~~l------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
..++.+ +.|.+|.+|+++++|++|||++|+++|.+|+.
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 999876 88999999999999999999999999999976
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-38 Score=330.76 Aligned_cols=419 Identities=20% Similarity=0.207 Sum_probs=263.5
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|+++++|++|++++|.+.+..+ ..|.++++|++|+|++|.++... +..+.. +++|++|++++|.++...+ .
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~i~~l~~--~ 123 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMA--ETALSG-PKALKHLFFIQTGISSIDF--I 123 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEEC--TTTTSS-CTTCCEEECTTSCCSCGGG--S
T ss_pred hhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccC--hhhhcc-cccccEeeccccCcccCCc--c
Confidence 4577888888888888888887767 77888888888888888887663 333444 8888888888888887655 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc--ccc-cccccccccccCC
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA--SLT-SLNYITGISKCSL 162 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~-~~n~l~~~~~~~l 162 (466)
.+.. +++|++|++++|.+++.....+..+ ++|++|++++|.+.+..+. .++.+++|+ .|+ +.|.+++......
T Consensus 124 ~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 124 PLHN--QKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp CCTT--CTTCCEEECCSSCCCCCCCCTTCCC-TTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred hhcc--CCcccEEECCCCcccccCcccccCC-cccCEEEcccCcccccChh-hhhhhcccceeEEecCCCccCccChhHh
Confidence 5666 8888888888888876544444456 8888888888888766565 777787777 666 6666554321110
Q ss_pred Cc-----------------------------------------------------cc-----------cCccccccCCCc
Q 047429 163 PI-----------------------------------------------------TL-----------VRPKYAFSNVTS 178 (466)
Q Consensus 163 ~~-----------------------------------------------------~~-----------~~~~~~l~~l~~ 178 (466)
.. .+ ...+..|..+++
T Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279 (606)
T ss_dssp TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTT
T ss_pred hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccC
Confidence 00 00 011234778889
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC-----c---
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV-----T--- 250 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----~--- 250 (466)
|++|++++|.++.+|..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.+.+.++.. .
T Consensus 280 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF------PSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp CSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC------TTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred CCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc------CcCCEEECCCCCcccccchhhhhccCcCC
Confidence 999999999999998889999999999999999987777655554 46777777777665443321 0
Q ss_pred -------cccccc--CcccCCCCCCcEEeCCCCee-----------------eeecccccccCCC-CCCCCCCccEEEcc
Q 047429 251 -------ELDGTF--PKQFCRPSSLVELDLESNQL-----------------WLRFNHINGSATP-KLCSSPMLQVLDFS 303 (466)
Q Consensus 251 -------~l~~~l--p~~~~~l~~L~~L~L~~n~l-----------------~l~~n~~~~~~~~-~~~~l~~L~~L~Ls 303 (466)
.+.+.. |..+..+++|++|++++|.+ ++++|.+.+..+. .+..+++|++|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 111111 44455666666666666543 2444555544433 35666666666666
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCce-eeeeee----ccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQ----LIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+|.+++..|..|+++++|+.|+++++. .+.... +.....+.......+.+.+..+..+..++.|++|+|++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 666666666666666666666643332 111000 000001111111111122233334445555555555555555
Q ss_pred cCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHH
Q 047429 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVK 456 (466)
Q Consensus 379 ~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
+ ..|.++.+++.| +|++++|++++.+|+. +..+......+...++|.|.|...+ +..|++.+
T Consensus 514 ~------------~~~~~l~~l~~L-~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~c~~~~-~~~w~~~~ 575 (606)
T 3t6q_A 514 S------------SSIEALSHLKGI-YLNLASNHISIILPSL--LPILSQQRTINLRQNPLDCTCSNIY-FLEWYKEN 575 (606)
T ss_dssp G------------GGGGGGTTCCSC-EEECCSSCCCCCCGGG--HHHHHTSSEEECTTCCEECSGGGHH-HHHHHHHC
T ss_pred c------------CChhHhCccccc-EEECcCCcccccCHhh--cccCCCCCEEeCCCCCccccCCcHH-HHHHHHhC
Confidence 3 446667888888 8888888888555543 2233444556677788888887654 66777653
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-38 Score=326.03 Aligned_cols=362 Identities=18% Similarity=0.253 Sum_probs=268.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCC-----------------------------------------
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLR----------------------------------------- 51 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~----------------------------------------- 51 (466)
.+++.|+|+++.+.+..| ..+..+++|++|+|++|.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 578899999999988888 78899999999999988540
Q ss_pred ----------------------------------CccchHHHHhcCCCCCCEEEcCCCCCCCC-----------------
Q 047429 52 ----------------------------------EATDWLQVVITGLPSLRELDLSSSAPPKI----------------- 80 (466)
Q Consensus 52 ----------------------------------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------- 80 (466)
.+..+|..+.. +++|++|+|++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhc-ccCCCEEECcCCccccccccccccccccchhccc
Confidence 01112455666 88999999999988872
Q ss_pred Cccccccc--cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc-ccc-CCChhhhhcC------Ccccccc-
Q 047429 81 NYRSHSLV--NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ-LQG-PTPDYAFRNM------TSLASLT- 149 (466)
Q Consensus 81 ~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~-l~~-~~~~~~~~~l------~~L~~L~- 149 (466)
.| ..+. . +++|++|++++|.+.+..|..+.++ ++|++|++++|. +++ .+|. .++.+ ++|+.|+
T Consensus 239 ip--~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 239 KT--EDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp TT--SCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTC-SSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEEC
T ss_pred Cc--hhhhhcc--cCCCCEEEecCCcCCccChHHHhcC-CCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEEC
Confidence 23 3555 6 8889999999998888888888888 889999999998 877 6777 77766 8888888
Q ss_pred cccccccccccCCCccccCccc--cccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhcccc
Q 047429 150 SLNYITGISKCSLPITLVRPKY--AFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAG 226 (466)
Q Consensus 150 ~~n~l~~~~~~~l~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 226 (466)
+.|.++. +| . .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 313 ~~n~l~~-----ip-------~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--- 375 (636)
T 4eco_A 313 GYNNLKT-----FP-------VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF--- 375 (636)
T ss_dssp CSSCCSS-----CC-------CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE---
T ss_pred CCCcCCc-----cC-------chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhh---
Confidence 8888873 56 5 68888889999999998884 88 7888888999999998887 566555544
Q ss_pred ccccc-cceEecCCccccccCCCCcccccccCcccCCCC--CCcEEeCCCCeeeeecccccccCCCCCC-------CCCC
Q 047429 227 CAKKS-LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS--SLVELDLESNQLWLRFNHINGSATPKLC-------SSPM 296 (466)
Q Consensus 227 ~~~~~-L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~--~L~~L~L~~n~l~l~~n~~~~~~~~~~~-------~l~~ 296 (466)
++ |++|++++|.++ .+|..+..++ +|++|++++ |.+++..|..+. .+++
T Consensus 376 ---~~~L~~L~Ls~N~l~-----------~lp~~~~~~~l~~L~~L~Ls~-------N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 376 ---TEQVENLSFAHNKLK-----------YIPNIFDAKSVSVMSAIDFSY-------NEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ---CTTCCEEECCSSCCS-----------SCCSCCCTTCSSCEEEEECCS-------SCTTTTTTCSSCTTCSSCCCCCC
T ss_pred ---cccCcEEEccCCcCc-----------ccchhhhhcccCccCEEECcC-------CcCCCcchhhhcccccccccCCC
Confidence 56 888999999888 5666666554 788888888 455677777777 7778
Q ss_pred ccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeeeeccCCC--------Ccccccceeeeeecccchhh-hccCC
Q 047429 297 LQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQLIDDP--------EFDYQDRALLVWKPIDSIYK-ITLGL 366 (466)
Q Consensus 297 L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~ 366 (466)
|++|++++|.+++..+..+..+++|+.|+++++. ...+....... .+.......+.+..++.... ..+++
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence 8999999998886555566678888888855443 32211111110 11111111122223333222 37899
Q ss_pred CcEEECCCCcCCcCCcHHHHhh------------------ccCCCcccccCCCCCCeeeccCCcCcccCCCCCC
Q 047429 367 PKSIDLSDNNLSGKIPEEITSL------------------LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIP 422 (466)
Q Consensus 367 L~~L~Ls~N~l~~~ip~~i~~l------------------~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 422 (466)
|+.|+|++|++++ +|..++.+ +.+.+|.++.++++|++|+|++|++ +.+|....
T Consensus 515 L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 9999999999996 88887764 2678999999999999999999999 58998743
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-36 Score=305.93 Aligned_cols=378 Identities=20% Similarity=0.229 Sum_probs=250.3
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|++|+|++|.+++..+ ..|.++++|++|++++|.+.... +...+.++++|++|++++|.++...+ ..+.. +
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i--~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~--l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKLDYNQFLQLET--GAFNG--L 102 (455)
T ss_dssp TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEE--CTTTTTTCTTCCEEECTTCTTCEECT--TTTTT--C
T ss_pred CccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceE--CcccccccccCCEEeCCCCccCccCh--hhccC--c
Confidence 689999999999998877 88999999999999999986432 23334449999999999999988766 57777 9
Q ss_pred CCccEEEcCCCCCCchhhhh--hhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 93 SSLTHLHLSLCGLSNSAYHC--LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~--l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..|...+.++++|++|+ +.|.+++. .+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~------ 171 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI----CE------ 171 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC----CT------
T ss_pred ccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc----Ch------
Confidence 99999999999999765554 8888 99999999999999877763489999999999 99999886 44
Q ss_pred cccccCC--CccCEEecCCCcCCCCCcc---------cCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecC
Q 047429 170 KYAFSNV--TSLMDLDLSKNQITGIPKS---------FGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQ 238 (466)
Q Consensus 170 ~~~l~~l--~~L~~L~Ls~n~l~~~~~~---------l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 238 (466)
..+..+ .+|+.|++++|.+..++.. +..+++|++|++++|.+++..|..+.....+ .+|+.|+++
T Consensus 172 -~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~---~~L~~L~l~ 247 (455)
T 3v47_A 172 -EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG---TKIQSLILS 247 (455)
T ss_dssp -TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT---CCEEEEECT
T ss_pred -hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc---cceeeEeec
Confidence 344444 6899999999999885432 3466899999999999988777766554221 356777777
Q ss_pred CccccccCCCCcccccccCcccCC--CCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhh
Q 047429 239 NNMLSGSLPGVTELDGTFPKQFCR--PSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLN 316 (466)
Q Consensus 239 ~n~l~~~~~~~~~l~~~lp~~~~~--l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 316 (466)
+|...+.......+.+..+..+.. .++|++|++++| .+.+..|..++.+++|++|++++|.+++..|..|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-------KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCc-------cccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 665543322211111111111221 245666666663 33445555666666666666666666666666666
Q ss_pred hhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCccc
Q 047429 317 NLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS 396 (466)
Q Consensus 317 ~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~ 396 (466)
++++|+.|+++++.. ....+..+..+++|++|+|++|++++ ..|.+
T Consensus 321 ~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~ 366 (455)
T 3v47_A 321 GLTHLLKLNLSQNFL----------------------GSIDSRMFENLDKLEVLDLSYNHIRA------------LGDQS 366 (455)
T ss_dssp TCTTCCEEECCSSCC----------------------CEECGGGGTTCTTCCEEECCSSCCCE------------ECTTT
T ss_pred CcccCCEEECCCCcc----------------------CCcChhHhcCcccCCEEECCCCcccc------------cChhh
Confidence 666666666433321 11222233445566666666666653 22334
Q ss_pred ccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHH
Q 047429 397 FSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAV 455 (466)
Q Consensus 397 l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (466)
|.++++|++|++++|++++ +|... +..+......+...+++.|.+.....+..|+..
T Consensus 367 ~~~l~~L~~L~L~~N~l~~-~~~~~-~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 423 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKS-VPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423 (455)
T ss_dssp TTTCTTCCEEECCSSCCSC-CCTTT-TTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred ccccccccEEECCCCcccc-CCHhH-hccCCcccEEEccCCCcccCCCcchHHHHHHHh
Confidence 5556666666666666653 33321 122333334444445555555544445555543
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.6e-37 Score=320.14 Aligned_cols=411 Identities=19% Similarity=0.137 Sum_probs=232.3
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
..|.++++|++|++++|.+++..+ ..|.++++|++|+|++|.++... +..+.. +++|++|++++|.++..++ ..
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~-l~~L~~L~L~~n~l~~~~~--~~ 123 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFS--PGSFSG-LTSLENLVAVETKLASLES--FP 123 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCC--TTSSTT-CTTCCEEECTTSCCCCSSS--SC
T ss_pred hhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccC--hhhcCC-cccCCEEEccCCccccccc--cc
Confidence 356667777777777777766655 56677777777777777766652 333333 7777777777777766655 34
Q ss_pred cccCCCCCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc----ccc-ccccccccccc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA----SLT-SLNYITGISKC 160 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~----~L~-~~n~l~~~~~~ 160 (466)
+.. +++|++|++++|.+++ ..|..+.++ ++|++|++++|.+++..+. .++.+.+|+ .|+ +.|.++.....
T Consensus 124 ~~~--l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 124 IGQ--LITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp CTT--CTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred cCC--CCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChh-hhhhhhccccccceeeccCCCcceeCcc
Confidence 555 6777777777777664 346666666 7777777777776655444 444444332 333 33333322100
Q ss_pred CCCc---------------------------------------------------------------------c-ccCcc
Q 047429 161 SLPI---------------------------------------------------------------------T-LVRPK 170 (466)
Q Consensus 161 ~l~~---------------------------------------------------------------------~-~~~~~ 170 (466)
.... . ....+
T Consensus 200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence 0000 0 00000
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhh--------------hhccccccccccceEe
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELF--------------LNFSAGCAKKSLQSFM 236 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--------------~~~~~~~~~~~L~~L~ 236 (466)
.+..+++|+.|++++|.+..+| .+..+++|++|++++|.+. .+|... .........++|+.|+
T Consensus 280 -~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 280 -KFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp -SCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred -ccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 1334455555555555555554 4555555666666665552 333210 0000001124688888
Q ss_pred cCCccccccC--CC-------Cc-------ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCC-CCCCCCCCccE
Q 047429 237 LQNNMLSGSL--PG-------VT-------ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSAT-PKLCSSPMLQV 299 (466)
Q Consensus 237 L~~n~l~~~~--~~-------~~-------~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~-~~~~~l~~L~~ 299 (466)
+++|.+++.. +. .. .+ ..+|..+..+++|++|++++ |.+.+..+ ..+..+++|++
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~-------n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQH-------STLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTT-------SEEESTTTTTTTTTCTTCCE
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCC-------CccCCccChhhhhccccCCE
Confidence 8888776431 10 00 00 02334455555555555555 44455555 56778888888
Q ss_pred EEccCCCCCCCchhhhhhhhhhhhcCCCCceeee---eeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCc
Q 047429 300 LDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEY---RIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNN 376 (466)
Q Consensus 300 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 376 (466)
|++++|.+++..|..|.++++|+.|+++++.... +..+.....+.......+.+.+..+..+..+++|++|+|++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 8888888888788888888888888855543221 1111111111111111122233344445566777777777777
Q ss_pred CCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccc-cccccchhHHHHHHhhhhhhhhHHHHH
Q 047429 377 LSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFE-ASAYKNWTHAYFQCLNNVEYKLYAWIA 454 (466)
Q Consensus 377 l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (466)
+++ .+|.+|.++++|++|++++|+++ .+|.. +..+. ...+.+...++|.|.|...+ +..|+.
T Consensus 509 l~~------------~~~~~~~~l~~L~~L~l~~N~l~-~~p~~--~~~l~~~L~~l~l~~N~~~c~c~~~~-~~~~l~ 571 (606)
T 3vq2_A 509 LLF------------LDSSHYNQLYSLSTLDCSFNRIE-TSKGI--LQHFPKSLAFFNLTNNSVACICEHQK-FLQWVK 571 (606)
T ss_dssp CSC------------EEGGGTTTCTTCCEEECTTSCCC-CEESC--GGGSCTTCCEEECCSCCCCCSSTTHH-HHTTTT
T ss_pred CCC------------cCHHHccCCCcCCEEECCCCcCc-ccCHh--HhhhcccCcEEEccCCCcccCCccHH-HHHHHH
Confidence 763 44667899999999999999998 78876 34443 34556666777777777643 555653
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.4e-36 Score=316.92 Aligned_cols=203 Identities=25% Similarity=0.254 Sum_probs=132.9
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|.++++|++|++++|.+++..+ ..+.++++|++|+|++|.++.+ +...+..+++|++|++++|.+++.++ .
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~L~~n~l~~~~~--~ 115 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQL---SDKTFAFCTNLTELHLMSNSIQKIKN--N 115 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCS--C
T ss_pred HHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCcc---ChhhhccCCCCCEEECCCCccCccCh--h
Confidence 3457777888888888888877666 7777888888888888887776 33333337888888888888777665 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhh--cCCcccccc-cccccccccccCC
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFR--NMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
.+.. +++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+. .+. .+++|+.|+ +.|.+++.....+
T Consensus 116 ~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 116 PFVK--QKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp TTTT--CTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred Hccc--cCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHH-HhhccccccccEEECCCCcccccChhhh
Confidence 5666 7788888888888777767777777 7788888888777755444 443 346677777 6666654321100
Q ss_pred Cc-----------------------------cc-----------cCccccccCCCc--cCEEecCCCcCCC-CCcccCCC
Q 047429 163 PI-----------------------------TL-----------VRPKYAFSNVTS--LMDLDLSKNQITG-IPKSFGDM 199 (466)
Q Consensus 163 ~~-----------------------------~~-----------~~~~~~l~~l~~--L~~L~Ls~n~l~~-~~~~l~~l 199 (466)
.. .+ ...+..+..++. |++|++++|.+++ .|..+..+
T Consensus 192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 271 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271 (680)
T ss_dssp GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc
Confidence 00 00 001123334433 7777777777776 34567777
Q ss_pred CCcCEEEeeCCcCCCccch
Q 047429 200 CCLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 200 ~~L~~L~L~~n~l~~~~~~ 218 (466)
++|++|++++|.+++..+.
T Consensus 272 ~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp TTCCEEECCSCCBSEECTT
T ss_pred ccccEeeCCCCccCccChh
Confidence 7777777777777655544
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=309.70 Aligned_cols=396 Identities=18% Similarity=0.145 Sum_probs=250.2
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
.+|.++++|++|++++|.+++..+ ..|.++++|++|++++|.++... +..+.. +++|++|++++|.++..++ ..
T Consensus 46 ~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~l~~--~~ 119 (570)
T 2z63_A 46 YSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLA--LGAFSG-LSSLQKLVAVETNLASLEN--FP 119 (570)
T ss_dssp TTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEEC--TTTTTT-CTTCCEEECTTSCCCCSTT--CS
T ss_pred hHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcCCccC--HhhhcC-ccccccccccccccccCCC--cc
Confidence 456777777788887777776655 66777777888888777776662 223333 7778888887777777655 34
Q ss_pred cccCCCCCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc----cccc-ccccccccccc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL----ASLT-SLNYITGISKC 160 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~-~~n~l~~~~~~ 160 (466)
+.. +++|++|++++|.+++. .|..+.++ ++|++|++++|.+.+..+. .++.+.+| +.|+ +.|.++.....
T Consensus 120 ~~~--l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 120 IGH--LKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp CTT--CTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ccc--cccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHH-HccchhccchhhhhcccCCCCceecCHH
Confidence 566 77788888888877653 46777777 7788888888877755554 56666555 4555 55544432110
Q ss_pred CCC----------------------------------------------------------------------ccccCcc
Q 047429 161 SLP----------------------------------------------------------------------ITLVRPK 170 (466)
Q Consensus 161 ~l~----------------------------------------------------------------------~~~~~~~ 170 (466)
.+. ......+
T Consensus 196 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 275 (570)
T 2z63_A 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275 (570)
T ss_dssp TTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred HhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence 000 0001122
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhc-------------cccccccccceEec
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNF-------------SAGCAKKSLQSFML 237 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-------------~~~~~~~~L~~L~L 237 (466)
..+..+++|++|++++|.++.+|..+..+ +|++|++++|.+.......+..+ +.....++|++|++
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred hhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 44666788999999999888888877777 88888888887763332211100 00012256888888
Q ss_pred CCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee----------------eeecccccccCC-CCCCCCCCccEE
Q 047429 238 QNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL----------------WLRFNHINGSAT-PKLCSSPMLQVL 300 (466)
Q Consensus 238 ~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l----------------~l~~n~~~~~~~-~~~~~l~~L~~L 300 (466)
++|.+++.. ..|..+..+++|++|++++|.+ ++++|.+.+..+ ..+..+++|++|
T Consensus 355 ~~n~l~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 355 SRNGLSFKG--------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp CSSCCBEEE--------EEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred cCCccCccc--------cccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 888887331 1133455555666666665543 233344444444 456777778888
Q ss_pred EccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcC
Q 047429 301 DFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGK 380 (466)
Q Consensus 301 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 380 (466)
++++|.+.+..|..|.++++|+.|+++++... .+..+..+..+++|++|++++|++++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------~~~~p~~~~~l~~L~~L~l~~n~l~~- 484 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ---------------------ENFLPDIFTELRNLTFLDLSQCQLEQ- 484 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEG---------------------GGEECSCCTTCTTCCEEECTTSCCCE-
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCc---------------------cccchhhhhcccCCCEEECCCCcccc-
Confidence 88888877777777777777777775544321 01122334567888999999998884
Q ss_pred CcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHH
Q 047429 381 IPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVK 456 (466)
Q Consensus 381 ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
..|.+|..+++|++|++++|++++..|... ..+......+...+++.|.+.....+..|+...
T Consensus 485 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~ 547 (570)
T 2z63_A 485 -----------LSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547 (570)
T ss_dssp -----------ECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred -----------CChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEEecCCcccCCCcchHHHHHHHHhc
Confidence 335567888899999999999886555432 333444445555666777766655455676553
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-35 Score=307.54 Aligned_cols=370 Identities=21% Similarity=0.184 Sum_probs=254.8
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+.+++|++++|.+++..+ ..|.++++|++|+|++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. +
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~--~~~~~--l 104 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIH--EDTFQS-QHRLDTLVLTANPLIFMAE--TALSG--P 104 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEEC--TTTTTT-CTTCCEEECTTCCCSEECT--TTTSS--C
T ss_pred CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeC--hhhccC-ccccCeeeCCCCcccccCh--hhhcc--c
Confidence 479999999999998877 88999999999999999998773 444555 9999999999999998777 57778 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.+.... .+..+++|+.|+ +.|.+++. .+ .
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~----~~-------~ 171 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYL----SK-------E 171 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEE----CH-------H
T ss_pred ccccEeeccccCcccCCcchhccC-CcccEEECCCCcccccCcc-cccCCcccCEEEcccCccccc----Ch-------h
Confidence 999999999999998878889999 9999999999999874434 555699999999 99998875 33 5
Q ss_pred cccCCCccC--EEecCCCcCCCCCcccCCCC-------------------------------------------------
Q 047429 172 AFSNVTSLM--DLDLSKNQITGIPKSFGDMC------------------------------------------------- 200 (466)
Q Consensus 172 ~l~~l~~L~--~L~Ls~n~l~~~~~~l~~l~------------------------------------------------- 200 (466)
.+..+++|+ .|++++|.+.+++.......
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 677778888 78888888777332222222
Q ss_pred ---CcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee-
Q 047429 201 ---CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL- 276 (466)
Q Consensus 201 ---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l- 276 (466)
+|+.|++++|.+++..+..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~-----------~lp~~l~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCF------SGLQELDLTATHLS-----------ELPSGLVGLSTLKKLVLSANKFE 314 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTC------TTCSEEECTTSCCS-----------CCCSSCCSCTTCCEEECTTCCCS
T ss_pred hcCceeEEEeecCccCccCHHHhccc------cCCCEEeccCCccC-----------CCChhhcccccCCEEECccCCcC
Confidence 45555566666655555444443 45777777777666 5566666677777777777654
Q ss_pred ----------------eeecccccccCCC-CCCCCCCccEEEccCCCCCCCc--hhhhhhhhhhhhcCCCCc-eeeeeee
Q 047429 277 ----------------WLRFNHINGSATP-KLCSSPMLQVLDFSHNNISGMV--PTCLNNLSAMVQNGSSNV-IVEYRIQ 336 (466)
Q Consensus 277 ----------------~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~l~~~n~-~~~~~~~ 336 (466)
++++|.+.+.++. .+..+++|++|++++|.+++.. +..+.++++|+.|+++++ +......
T Consensus 315 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence 2444555545544 3677777777777777777655 667777777777775443 3322111
Q ss_pred ccC-CCCcccccceeeeeeccc-chhhhccCCCcEEECCCCcCCcCCcHHHHhh------------ccC---CCcccccC
Q 047429 337 LID-DPEFDYQDRALLVWKPID-SIYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LIG---KIPRSFSQ 399 (466)
Q Consensus 337 ~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~~---~ip~~l~~ 399 (466)
... .+.+.............. ...+..+++|++|++++|.+.+..|..++.+ +.+ ..+..+..
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 111 111111111111222222 2235667788888888888876656555433 222 12345778
Q ss_pred CCCCCeeeccCCcCcccCCCC
Q 047429 400 LSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 400 l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+++|++|++++|.+++..|..
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTT
T ss_pred CCCccEEECCCCccCccChhh
Confidence 888888888888888666654
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.4e-35 Score=310.10 Aligned_cols=334 Identities=16% Similarity=0.187 Sum_probs=220.3
Q ss_pred chHHHhhcCCCCcEEEccCCCCCC------------------ccchHHHHh--cCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 29 KFDQWLSYHNKLTSLSLQGLDLRE------------------ATDWLQVVI--TGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 29 ~~~~~~~~l~~L~~L~Ls~n~l~~------------------~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
.| ..+.++++|++|+|++|.+++ + |..+. . +++|++|+|++|.+.+..| ..+.
T Consensus 440 IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i---P~~l~f~~-L~~L~~L~Ls~N~l~~~iP--~~l~ 512 (876)
T 4ecn_A 440 IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE---NEELSWSN-LKDLTDVELYNCPNMTQLP--DFLY 512 (876)
T ss_dssp EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT---TSCCCGGG-CTTCCEEEEESCTTCCSCC--GGGG
T ss_pred hh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC---Chhhhhcc-CCCCCEEECcCCCCCccCh--HHHh
Confidence 44 678889999999999999988 4 55554 5 9999999999998877776 6788
Q ss_pred cCCCCCccEEEcCCCC-CCc-hhhhhhhcccC-------CCcEEEccCCccccCCCh-hhhhcCCcccccc-cccccccc
Q 047429 89 NSSSSSLTHLHLSLCG-LSN-SAYHCLSHISK-------SLVYLDLSNNQLQGPTPD-YAFRNMTSLASLT-SLNYITGI 157 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l~~-------~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~-~~n~l~~~ 157 (466)
. +++|++|++++|+ +++ .+|..+..+ + +|++|++++|.+. .+|. ..++++++|+.|+ +.|.++.
T Consensus 513 ~--L~~L~~L~Ls~N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~- 587 (876)
T 4ecn_A 513 D--LPELQSLNIACNRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRH- 587 (876)
T ss_dssp G--CSSCCEEECTTCTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCB-
T ss_pred C--CCCCCEEECcCCCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCccc-
Confidence 8 9999999999998 887 788777766 5 8999999999998 5554 3688999999999 8888874
Q ss_pred cccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCC-cCEEEeeCCcCCCccchhhhhccccccccccceEe
Q 047429 158 SKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC-LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFM 236 (466)
Q Consensus 158 ~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (466)
+| .+..+++|+.|++++|.++.+|..+..+++ |++|++++|.++ .+|..+... ..++|+.|+
T Consensus 588 ----lp--------~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~----~~~~L~~L~ 650 (876)
T 4ecn_A 588 ----LE--------AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK----SVYVMGSVD 650 (876)
T ss_dssp ----CC--------CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT----CSSCEEEEE
T ss_pred ----ch--------hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhcc----ccCCCCEEE
Confidence 44 578889999999999999888888888988 999999999988 555544332 113488899
Q ss_pred cCCccccccCCCCcccccccCcccC--CCCCCcEEeCCCCeeeeecccccccCCCCC-CCCCCccEEEccCCCCCCCchh
Q 047429 237 LQNNMLSGSLPGVTELDGTFPKQFC--RPSSLVELDLESNQLWLRFNHINGSATPKL-CSSPMLQVLDFSHNNISGMVPT 313 (466)
Q Consensus 237 L~~n~l~~~~~~~~~l~~~lp~~~~--~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~ 313 (466)
+++|.++|.+| .+|..+. .+++|+.|++++|.+ + .+|..+ ..+++|+.|+|++|.++ .+|.
T Consensus 651 Ls~N~l~g~ip-------~l~~~l~~~~~~~L~~L~Ls~N~L-------~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 651 FSYNKIGSEGR-------NISCSMDDYKGINASTVTLSYNEI-------Q-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCSSCTTTTSS-------SCSSCTTTCCCCCEEEEECCSSCC-------C-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred CcCCcCCCccc-------cchhhhccccCCCcCEEEccCCcC-------C-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 99998887665 2332222 334677777777544 2 333332 24555555555555555 2222
Q ss_pred h-hh-------hhhhhhhcCCCCce-eeeeeecc--CCCCcccccceeeeeecccchhhhccCCCcEEECCC------Cc
Q 047429 314 C-LN-------NLSAMVQNGSSNVI-VEYRIQLI--DDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSD------NN 376 (466)
Q Consensus 314 ~-~~-------~l~~L~~l~~~n~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~------N~ 376 (466)
. +. ++++|+.|+++++- ...+..+. ..+.+.......+.+.++ +..+..+++|+.|+|++ |+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCccccc
Confidence 2 21 12244444433221 11000000 000000000000001111 12233455566666654 33
Q ss_pred CCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCC
Q 047429 377 LSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSI 421 (466)
Q Consensus 377 l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 421 (466)
+. +.+|.+|.++++|+.|+|++|++ +.+|...
T Consensus 794 l~------------~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 794 IL------------RQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp CC------------CCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred cc------------ccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 33 46777889999999999999999 6888874
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=299.97 Aligned_cols=386 Identities=16% Similarity=0.173 Sum_probs=245.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|++|++++|.+++..+ ..|.++++|++|++++|.+++.. +..+.. +++|++|++++|.++.++. . . +
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~N~l~~lp~--~---~--l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLD--ISVFKF-NQELEYLDLSHNKLVKISC--H---P--T 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEE--GGGGTT-CTTCCEEECCSSCCCEEEC--C---C--C
T ss_pred ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcC--hHHhhc-ccCCCEEecCCCceeecCc--c---c--c
Confidence 789999999999988776 78899999999999999988773 334444 9999999999999886544 2 4 8
Q ss_pred CCccEEEcCCCCCCc-hhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc--cccc-ccccc--ccccccCCCccc
Q 047429 93 SSLTHLHLSLCGLSN-SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL--ASLT-SLNYI--TGISKCSLPITL 166 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~-~~n~l--~~~~~~~l~~~~ 166 (466)
++|++|++++|.+++ ..|..+..+ ++|++|++++|.+.+ . .+..+++| +.|+ +.|.+ .+.....++.-.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~-~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---S-SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---G-GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---h-hccccccceeeEEEeecccccccccccccccccc
Confidence 899999999999987 367888888 899999999998875 2 56777777 8888 77776 333111111000
Q ss_pred ---------------cCccccccCC-------------------------------------------------------
Q 047429 167 ---------------VRPKYAFSNV------------------------------------------------------- 176 (466)
Q Consensus 167 ---------------~~~~~~l~~l------------------------------------------------------- 176 (466)
......+..+
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 0000011112
Q ss_pred --CccCEEecCCCcCCC-CCccc-----CCCCCcCEEEeeCCcCCCccc-hhhhhccccccccccceEecCCccccccCC
Q 047429 177 --TSLMDLDLSKNQITG-IPKSF-----GDMCCLKTLKIHDNILTAKLP-ELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 177 --~~L~~L~Ls~n~l~~-~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
++|++|++++|.+++ +|..+ ..+++|+.+++++|.+ ..| ..+...+.. .+|+.|++++|.+.+
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~---~~L~~L~l~~n~l~~--- 316 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN---MNIKNFTVSGTRMVH--- 316 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT---CCCSEEEEESSCCCC---
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccccc---CceeEEEcCCCcccc---
Confidence 245566666666653 56555 6666666666666666 222 222222110 246677777776651
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC--CchhhhhhhhhhhhcC
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG--MVPTCLNNLSAMVQNG 325 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~l~ 325 (466)
.+ .+..+++|++|++++| .+++..|..++.+++|++|++++|.+++ .+|..++++++|+.|+
T Consensus 317 --------~~-~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 317 --------ML-CPSKISPFLHLDFSNN-------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380 (520)
T ss_dssp --------CC-CCSSCCCCCEEECCSS-------CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred --------cc-chhhCCcccEEEeECC-------ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence 11 1256677888888774 4455567777777888888888888775 4456677777777777
Q ss_pred CCCceee--eeeeccCC-CCcccccceeeeeecccchhhhcc-CCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCC
Q 047429 326 SSNVIVE--YRIQLIDD-PEFDYQDRALLVWKPIDSIYKITL-GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLS 401 (466)
Q Consensus 326 ~~n~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~ 401 (466)
++++... .+...... ..+.. +......+.......+ +.|+.|++++|+++ .+|.++..++
T Consensus 381 Ls~N~l~~~l~~~~~~~l~~L~~---L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-------------~ip~~~~~l~ 444 (520)
T 2z7x_B 381 ISQNSVSYDEKKGDCSWTKSLLS---LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-------------SIPKQVVKLE 444 (520)
T ss_dssp CCSSCCBCCGGGCSCCCCTTCCE---EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-------------CCCGGGGGCT
T ss_pred CCCCcCCcccccchhccCccCCE---EECcCCCCCcchhhhhcccCCEEECCCCccc-------------ccchhhhcCC
Confidence 5444322 11110000 00000 0000011111111122 46777777777776 6677778999
Q ss_pred CCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHHHH
Q 047429 402 HLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIAVK 456 (466)
Q Consensus 402 ~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (466)
+|++|++++|+++ .+|.. .+..+......+...+++.|.|.....+..|+...
T Consensus 445 ~L~~L~L~~N~l~-~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 445 ALQELNVASNQLK-SVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp TCCEEECCSSCCC-CCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred CCCEEECCCCcCC-ccCHH-HhccCCcccEEECcCCCCcccCCchHHHHHHHHhc
Confidence 9999999999999 78876 34555666666777788888887755336665543
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-35 Score=294.16 Aligned_cols=354 Identities=18% Similarity=0.142 Sum_probs=273.3
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..++++++|++|++++|.+.+..++..|.++++|++|+|++|.++... +..+.. +++|++|++++|.+++..+...
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~~~~ 123 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--TGAFNG-LANLEVLTLTQCNLDGAVLSGN 123 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--TTTTTT-CTTCCEEECTTSCCBTHHHHSS
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC--hhhccC-cccCCEEeCCCCCCCccccCcc
Confidence 5678999999999999999875544378999999999999999998773 444555 9999999999999987433213
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhh-hhcccCCCcEEEccCCccccCCChhhhhcC--Ccccccc-cccccccccccC
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHC-LSHISKSLVYLDLSNNQLQGPTPDYAFRNM--TSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~-~~n~l~~~~~~~ 161 (466)
.+.. +++|++|++++|.+++..|.. +..+ ++|++|++++|.+.+..+. .+..+ .+|+.|+ +.|.+.......
T Consensus 124 ~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 124 FFKP--LTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp TTTT--CTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred cccC--cccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhh
Confidence 3666 999999999999999887776 7888 9999999999999987777 77766 6889999 888887753211
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCC-CCcccCC---CCCcCEEEeeCCcCCCccch------hhhhccccccccc
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGD---MCCLKTLKIHDNILTAKLPE------LFLNFSAGCAKKS 231 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~---l~~L~~L~L~~n~l~~~~~~------~~~~~~~~~~~~~ 231 (466)
+.. .....+..+++|++|++++|.+++ .|..+.. .++|+.|++++|.+.+.... .....+.+...++
T Consensus 200 ~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 200 LGW---EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTH---HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred ccc---cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 110 000123466899999999999987 5554433 37999999999876543211 0001122223357
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
|+.|++++|.+++. .|..+..+++|++|++++| .+++..+..+..+++|++|++++|.+++..
T Consensus 277 L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 277 VKTCDLSKSKIFAL----------LKSVFSHFTDLEQLTLAQN-------EINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp CCEEECCSSCCCEE----------CTTTTTTCTTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred ceEEEecCcccccc----------chhhcccCCCCCEEECCCC-------cccccChhHhcCcccCCEEECCCCccCCcC
Confidence 99999999999843 3566889999999999995 556677888999999999999999999888
Q ss_pred hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccC
Q 047429 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIG 391 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~ 391 (466)
|..|.++++|+.|+++++.. ....+..+..+++|++|+|++|++++ +|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--------- 387 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHI----------------------RALGDQSFLGLPNLKELALDTNQLKS-VP--------- 387 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCC----------------------CEECTTTTTTCTTCCEEECCSSCCSC-CC---------
T ss_pred hhHhcCcccCCEEECCCCcc----------------------cccChhhccccccccEEECCCCcccc-CC---------
Confidence 99999999999999655432 12233445678999999999999993 33
Q ss_pred CCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 392 KIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 392 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+..+..+++|++|++++|++++..|..
T Consensus 388 --~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 388 --DGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp --TTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred --HhHhccCCcccEEEccCCCcccCCCcc
Confidence 234789999999999999999888853
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.2e-35 Score=303.92 Aligned_cols=330 Identities=18% Similarity=0.177 Sum_probs=267.0
Q ss_pred cccccc--CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC-CCC-ccchHHHHhcCC------CCCCEEEcCC
Q 047429 5 EAGFHI--SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD-LRE-ATDWLQVVITGL------PSLRELDLSS 74 (466)
Q Consensus 5 ~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~~~l------~~L~~L~Ls~ 74 (466)
-|+.++ ++++|++|++++|.+.+..| ..+.++++|++|++++|. +++ .. |..+.. + ++|++|++++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~l--p~~~~~-L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQL--KDDWQA-LADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHH--HHHHHH-HHHSGGGGTCCEEECCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccc--hHHHHh-hhccccCCCCCEEECCC
Confidence 356677 99999999999999998888 899999999999999998 876 21 666655 5 9999999999
Q ss_pred CCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCc-ccccc-ccc
Q 047429 75 SAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS-LASLT-SLN 152 (466)
Q Consensus 75 n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~-~~n 152 (466)
|.++.++.. ..+.. +++|++|++++|.+++.+| .+..+ ++|++|++++|.+. .+|. .+..+++ |+.|+ +.|
T Consensus 315 n~l~~ip~~-~~l~~--l~~L~~L~L~~N~l~g~ip-~~~~l-~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 315 NNLKTFPVE-TSLQK--MKKLGMLECLYNQLEGKLP-AFGSE-IKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHN 387 (636)
T ss_dssp SCCSSCCCH-HHHTT--CTTCCEEECCSCCCEEECC-CCEEE-EEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSS
T ss_pred CcCCccCch-hhhcc--CCCCCEEeCcCCcCccchh-hhCCC-CCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCC
Confidence 999954320 15777 9999999999999997888 88888 99999999999999 7888 8999999 99999 999
Q ss_pred ccccccccCCCccccCccccccCC--CccCEEecCCCcCCC-CCcccC-------CCCCcCEEEeeCCcCCCccchhhhh
Q 047429 153 YITGISKCSLPITLVRPKYAFSNV--TSLMDLDLSKNQITG-IPKSFG-------DMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 153 ~l~~~~~~~l~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~-~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
.++. +| ..+..+ ++|++|++++|.+.+ +|..+. .+++|++|++++|.+++..+..+..
T Consensus 388 ~l~~-----lp-------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 388 KLKY-----IP-------NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp CCSS-----CC-------SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred cCcc-----cc-------hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 9884 55 455554 489999999999998 777777 7889999999999999655555544
Q ss_pred ccccccccccceEecCCccccccCCCCcccccccCcccC--------CCCCCcEEeCCCCeeeeecccccccCCCCCC--
Q 047429 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFC--------RPSSLVELDLESNQLWLRFNHINGSATPKLC-- 292 (466)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~--------~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~-- 292 (466)
+ ++|+.|++++|.++ .+|..+. ++++|++|++++|++ + .+|..+.
T Consensus 456 l------~~L~~L~Ls~N~l~-----------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-------~-~lp~~~~~~ 510 (636)
T 4eco_A 456 G------SPLSSINLMGNMLT-----------EIPKNSLKDENENFKNTYLLTSIDLRFNKL-------T-KLSDDFRAT 510 (636)
T ss_dssp T------CCCSEEECCSSCCS-----------BCCSSSSEETTEECTTGGGCCEEECCSSCC-------C-BCCGGGSTT
T ss_pred C------CCCCEEECCCCCCC-----------CcCHHHhccccccccccCCccEEECcCCcC-------C-ccChhhhhc
Confidence 4 67999999999998 4443322 334999999999665 3 6888887
Q ss_pred CCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEEC
Q 047429 293 SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDL 372 (466)
Q Consensus 293 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 372 (466)
.+++|++|+|++|++++ +|..+.++++|+.|+++++... . ...+.+..+..+..++.|++|+|
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l-----s-----------~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA-----Q-----------GNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT-----T-----------CCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc-----c-----------cCcccccChHHHhcCCCCCEEEC
Confidence 99999999999999997 8899999999999986432200 0 00012333445677999999999
Q ss_pred CCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 373 SDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 373 s~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|++. . +|..+. ++|+.|++++|++.
T Consensus 574 s~N~l~-~------------ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 574 GSNDIR-K------------VNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCC-B------------CCSCCC--TTCCEEECCSCTTC
T ss_pred CCCcCC-c------------cCHhHh--CcCCEEECcCCCCc
Confidence 999995 4 454454 79999999999987
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=313.00 Aligned_cols=289 Identities=23% Similarity=0.286 Sum_probs=193.8
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
-.+++++|||++|.+++..+ ..|.++++|++|+|++|....... +..+.. +++|++|+|++|.+....+ ..+..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~-L~~L~~L~Ls~N~l~~~~p--~~~~~- 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTID-KEAFRN-LPNLRILDLGSSKIYFLHP--DAFQG- 95 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEEC-TTTTSS-CTTCCEEECTTCCCCEECT--TSSCS-
T ss_pred CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccC-HHHhcC-CCCCCEEECCCCcCcccCH--hHccC-
Confidence 44678888888888887766 778888888888888885433210 223434 8888888888888877766 56777
Q ss_pred CCCCccEEEcCCCCCCchhhhh--hhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcccc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHC--LSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLV 167 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~ 167 (466)
+++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+...|+++++|++|+ +.|.+++. .+
T Consensus 96 -l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~----~~---- 165 (844)
T 3j0a_A 96 -LFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV----CE---- 165 (844)
T ss_dssp -CSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC----CS----
T ss_pred -CcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee----CH----
Confidence 888888888888887654443 7777 88888888888887655432678888888888 77877765 33
Q ss_pred CccccccCC--CccCEEecCCCcCCC-CCcccCCCCC------cCEEEeeCCcCCCccchhhhhc---------------
Q 047429 168 RPKYAFSNV--TSLMDLDLSKNQITG-IPKSFGDMCC------LKTLKIHDNILTAKLPELFLNF--------------- 223 (466)
Q Consensus 168 ~~~~~l~~l--~~L~~L~Ls~n~l~~-~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~~--------------- 223 (466)
..+..+ ++|+.|++++|.+.+ .|..+..+++ |++|++++|.+++..+..+...
T Consensus 166 ---~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 166 ---HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp ---GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred ---HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 444444 677777777777766 4444444443 7777777776665544433221
Q ss_pred -----------------cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee----------
Q 047429 224 -----------------SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL---------- 276 (466)
Q Consensus 224 -----------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l---------- 276 (466)
+.+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~----------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS----------RVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS----------CCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccCh----------hhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 112223467777777777764322 2344444455555444433
Q ss_pred -------eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCC
Q 047429 277 -------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSN 328 (466)
Q Consensus 277 -------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n 328 (466)
++++|.+++..+..+..+++|++|++++|.+++..+..|.++++|+.|++++
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 2344666666677888888888888888888877777888888888887433
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-35 Score=302.33 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=54.7
Q ss_pred hccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHH
Q 047429 362 ITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQC 441 (466)
Q Consensus 362 ~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
..++.|++|+|++|+++ .+|. ...+++|++|+|++|++++.+|+. +..+......+...++|.|
T Consensus 448 ~~l~~L~~L~Ls~N~l~-------------~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-------------TLPD-ASLFPVLLVMKISRNQLKSVPDGI--FDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCCTTCCEEECCSSCCS-------------SCCC-GGGCTTCCEEECCSSCCCCCCTTG--GGGCTTCCEEECCSSCBCC
T ss_pred ccCChhcEEECCCCccC-------------cCCC-cccCccCCEEecCCCccCCcCHHH--HhcCcccCEEEecCCCccC
Confidence 35777888888888887 4554 467899999999999999766653 2334444555666667778
Q ss_pred hhhhhhhhHHHHHH
Q 047429 442 LNNVEYKLYAWIAV 455 (466)
Q Consensus 442 ~~~~~~~~~~~~~~ 455 (466)
.|.....+..|+..
T Consensus 512 ~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 512 SCPRIDYLSRWLNK 525 (549)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHh
Confidence 77766666677654
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-33 Score=296.43 Aligned_cols=289 Identities=21% Similarity=0.243 Sum_probs=210.7
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.+++.. +..+.. +++|++|++++|.++..++ ..+.. +
T Consensus 25 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~l~~--~~~~~--l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLE--PELCQK-LPMLKVLNLQHNELSQLSD--KTFAF--C 96 (680)
T ss_dssp TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCC--TTHHHH-CTTCCEEECCSSCCCCCCT--TTTTT--C
T ss_pred CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccC--HHHHhc-ccCcCEEECCCCccCccCh--hhhcc--C
Confidence 689999999999998776 78999999999999999998874 455666 9999999999999998876 56777 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+++..+..|..+ ++|++|++++|.+.+..+. .++++++|++|+ +.|.+++. .+ .
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~----~~-------~ 163 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL----KS-------E 163 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTC-TTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB----CH-------H
T ss_pred CCCCEEECCCCccCccChhHcccc-CCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc----CH-------H
Confidence 999999999999998888889999 9999999999999987777 889999999999 99988775 22 2
Q ss_pred cc--cCCCccCEEecCCCcCCC-CCcccCCC---------------------------CCcCEEEeeCCcCCCccchhhh
Q 047429 172 AF--SNVTSLMDLDLSKNQITG-IPKSFGDM---------------------------CCLKTLKIHDNILTAKLPELFL 221 (466)
Q Consensus 172 ~l--~~l~~L~~L~Ls~n~l~~-~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~ 221 (466)
.+ ..+++|++|++++|.+++ .|..+..+ ++|+.|++++|.+++..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 22 345788888888888877 33444433 4566666666766666555554
Q ss_pred hccccccccccceEecCCccccccCCCC--------------cccccccCcccCCCCCCcEEeCCCCeeeeeccccc-cc
Q 047429 222 NFSAGCAKKSLQSFMLQNNMLSGSLPGV--------------TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHIN-GS 286 (466)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~-~~ 286 (466)
.. ..++|++|++++|.+++..+.. ..+.+..|..+..+++|++|++++|.. ++.+. ..
T Consensus 244 ~l----~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~---~~~~~~~~ 316 (680)
T 1ziw_A 244 GL----KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT---KQSISLAS 316 (680)
T ss_dssp GG----GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC---CC------
T ss_pred cc----CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh---hccccccc
Confidence 33 0123777777777776433211 011122233444444444444444321 00000 02
Q ss_pred CC----CCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 287 AT----PKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 287 ~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
+| ..+..+++|++|++++|.+++..+..|.++++|+.|+++++
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 22 26778889999999999999888888999999998886554
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-34 Score=297.45 Aligned_cols=180 Identities=21% Similarity=0.227 Sum_probs=151.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. +
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~--~~~~~~-l~~L~~L~Ls~n~l~~~~p--~~~~~--l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIE--DKAWHG-LHHLSNLILTGNPIQSFSP--GSFSG--L 103 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEEC--TTTTTT-CTTCCEEECTTCCCCCCCT--TSSTT--C
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccC--HHHhhc-hhhcCEeECCCCcccccCh--hhcCC--c
Confidence 689999999999998877 78999999999999999998873 333444 9999999999999999877 67888 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc-CCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG-PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.+ .+|. .++++++|++|+ +.|.+++. .+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~----~~------- 170 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI----TV------- 170 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEE----CT-------
T ss_pred ccCCEEEccCCccccccccccCCC-CCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceec----Ch-------
Confidence 999999999999998877889999 999999999999986 4687 899999999999 99998876 33
Q ss_pred ccccCCCccC----EEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 171 YAFSNVTSLM----DLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 171 ~~l~~l~~L~----~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+..+++|+ +|++++|.++.++.......+|++|++++|.++
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence 4455555544 788888888886654444557888888888764
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-34 Score=288.92 Aligned_cols=300 Identities=22% Similarity=0.225 Sum_probs=241.9
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|+|++|.+++..+ ..|..+++|++|+|++|.++.+. +..+.. +++|++|+|++|.++..++ ..+.. +
T Consensus 32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l 103 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVE--PGAFNN-LFNLRTLGLRSNRLKLIPL--GVFTG--L 103 (477)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCCSCCT--TSSTT--C
T ss_pred CCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeC--hhhhhC-CccCCEEECCCCcCCccCc--ccccC--C
Confidence 578999999999998777 78899999999999999988773 334444 9999999999999988776 56677 8
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+.+..+..|..+ ++|++|++++|.+.+..+. .|.++++|+.|+ +.|.++.. .+ .
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~----~~-------~ 170 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSI----PT-------E 170 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSC----CH-------H
T ss_pred CCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCccc----Ch-------h
Confidence 999999999999998888888888 9999999999999877777 888999999999 88888775 22 4
Q ss_pred cccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 172 AFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
.+..+++|+.|++++|.+..+ +..+..+++|++|++++|...+..+...... .+|+.|++++|.++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------~~L~~L~l~~n~l~------- 237 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG------LNLTSLSITHCNLT------- 237 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT------CCCSEEEEESSCCC-------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC------ccccEEECcCCccc-------
Confidence 688899999999999999884 4578889999999999988776666544333 37999999999988
Q ss_pred ccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 251 ELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 251 ~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
.+| ..+..+++|++|++++|. +++..+..+..+++|++|+|++|.+++..|..|.++++|
T Consensus 238 ----~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------- 298 (477)
T 2id5_A 238 ----AVPYLAVRHLVYLRFLNLSYNP-------ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-------- 298 (477)
T ss_dssp ----SCCHHHHTTCTTCCEEECCSSC-------CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC--------
T ss_pred ----ccCHHHhcCccccCeeECCCCc-------CCccChhhccccccCCEEECCCCccceECHHHhcCcccC--------
Confidence 555 357888999999999854 455666778899999999999999998878877777666
Q ss_pred eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 330 IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
+.|+|++|++++ +| +..|..+++|+.|+++
T Consensus 299 --------------------------------------~~L~L~~N~l~~-~~-----------~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 299 --------------------------------------RVLNVSGNQLTT-LE-----------ESVFHSVGNLETLILD 328 (477)
T ss_dssp --------------------------------------CEEECCSSCCSC-CC-----------GGGBSCGGGCCEEECC
T ss_pred --------------------------------------CEEECCCCcCce-eC-----------HhHcCCCcccCEEEcc
Confidence 777777777772 22 2245667777777777
Q ss_pred CCcCcc
Q 047429 410 NNNFSG 415 (466)
Q Consensus 410 ~N~l~~ 415 (466)
+|.+.+
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 777753
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-34 Score=294.13 Aligned_cols=367 Identities=19% Similarity=0.231 Sum_probs=244.1
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|+|++|.++++. +..+.. +++|++|++++|.++.++. . . +
T Consensus 52 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~-l~~L~~L~Ls~N~l~~lp~--~---~--l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLD--FHVFLF-NQDLEYLDVSHNRLQNISC--C---P--M 120 (562)
T ss_dssp TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEEC--TTTTTT-CTTCCEEECTTSCCCEECS--C---C--C
T ss_pred CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCC--HHHhCC-CCCCCEEECCCCcCCccCc--c---c--c
Confidence 688899999998887766 78888999999999999888763 333444 8899999999998886554 2 4 8
Q ss_pred CCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc--cccc-ccccc--ccccccCCCccc
Q 047429 93 SSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL--ASLT-SLNYI--TGISKCSLPITL 166 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~-~~n~l--~~~~~~~l~~~~ 166 (466)
++|++|++++|.+++. .|..|.++ ++|++|++++|.+.+. .+..+++| +.|+ +.|.+ ++.....++.-.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccCCEEECCCCCccccCchHhhccc-CcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCcccccccC
Confidence 8899999999988864 35788888 8899999999888753 34455555 8888 77776 433111111000
Q ss_pred ---------------cCccccccCCC------------------------------------------------------
Q 047429 167 ---------------VRPKYAFSNVT------------------------------------------------------ 177 (466)
Q Consensus 167 ---------------~~~~~~l~~l~------------------------------------------------------ 177 (466)
......+..++
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence 00001111222
Q ss_pred -ccCEEecCCCcCCC-CCccc-----CCCCCcCEEEeeCCcCCCccc-hhhhhcccc-------------------cccc
Q 047429 178 -SLMDLDLSKNQITG-IPKSF-----GDMCCLKTLKIHDNILTAKLP-ELFLNFSAG-------------------CAKK 230 (466)
Q Consensus 178 -~L~~L~Ls~n~l~~-~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~-------------------~~~~ 230 (466)
+|++|++++|.+++ +|..+ ..++.|+.+++..+.+ ..| ..+...+.. ...+
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 44555555555543 44433 2333222222222222 111 000000000 1235
Q ss_pred ccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc--cCCCCCCCCCCccEEEccCCCCC
Q 047429 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING--SATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~--~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
+|++|++++|.+++. +|..+..+++|++|++++|++ ++ .+|..+..+++|++|++++|.++
T Consensus 354 ~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~L~~N~l-------~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 354 SFTFLNFTQNVFTDS----------VFQGCSTLKRLQTLILQRNGL-------KNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCCEEECCSSCCCTT----------TTTTCCSCSSCCEEECCSSCC-------CBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CceEEECCCCccccc----------hhhhhcccCCCCEEECCCCCc-------CCcccchhhhcCCCCCCEEECCCCcCC
Confidence 799999999999843 456789999999999999665 33 33467899999999999999999
Q ss_pred CCch-hhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhcc-CCCcEEECCCCcCCcCCcHHHH
Q 047429 309 GMVP-TCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITL-GLPKSIDLSDNNLSGKIPEEIT 386 (466)
Q Consensus 309 ~~~p-~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~ip~~i~ 386 (466)
+.+| ..+..+++|+.|+++++... + .....+ +.|+.|+|++|+++
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~----------------------~---~~~~~l~~~L~~L~L~~N~l~-------- 463 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLT----------------------G---SVFRCLPPKVKVLDLHNNRIM-------- 463 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCC----------------------G---GGGSSCCTTCSEEECCSSCCC--------
T ss_pred CccChhhhcCcccCCEEECCCCCCC----------------------c---chhhhhcCcCCEEECCCCcCc--------
Confidence 8455 46888999998885554321 0 011123 58899999999998
Q ss_pred hhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCccccccccccchhHHHHHHhhhhhhhhHHHHH
Q 047429 387 SLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTFEASAYKNWTHAYFQCLNNVEYKLYAWIA 454 (466)
Q Consensus 387 ~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (466)
.+|.++..+++|++|+|++|+++ .+|.. .+..+......+...++|.|.|.....+..|..
T Consensus 464 -----~ip~~~~~l~~L~~L~L~~N~l~-~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~ 524 (562)
T 3a79_B 464 -----SIPKDVTHLQALQELNVASNQLK-SVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 524 (562)
T ss_dssp -----CCCTTTTSSCCCSEEECCSSCCC-CCCTT-STTTCTTCCCEECCSCCBCCCHHHHHHHHHHHH
T ss_pred -----ccChhhcCCCCCCEEECCCCCCC-CCCHH-HHhcCCCCCEEEecCCCcCCCcchHHHHHHHHH
Confidence 66666779999999999999999 78876 345556666677777888888887653344643
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=293.99 Aligned_cols=366 Identities=19% Similarity=0.219 Sum_probs=266.6
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.++.+ +...+..+++|++|++++|.++..++ ..+.. +
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~--l 99 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLAL--GAFSG--L 99 (570)
T ss_dssp SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECT--TTTTT--C
T ss_pred ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCcc---CcccccCchhCCEEeCcCCcCCccCH--hhhcC--c
Confidence 579999999999998877 7899999999999999999887 33444449999999999999998876 57778 9
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc-CCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG-PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
++|++|++++|.++...+..+..+ ++|++|++++|.+.+ ..|. .++++++|++|+ +.|.+++. .+
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~~~----~~------- 166 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSI----YC------- 166 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCCEE----CG-------
T ss_pred cccccccccccccccCCCcccccc-ccccEEecCCCccceecChh-hhcccCCCCEEeCcCCcccee----cH-------
Confidence 999999999999997766678888 999999999999986 3687 899999999999 99998876 33
Q ss_pred ccccCCCcc----CEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCC-------------------------------
Q 047429 171 YAFSNVTSL----MDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTA------------------------------- 214 (466)
Q Consensus 171 ~~l~~l~~L----~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~------------------------------- 214 (466)
..+..+++| +.|++++|.++.++ ..+... +|+.|++++|....
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 566777777 88999999998844 445444 78888888773221
Q ss_pred ---------------------------ccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCc
Q 047429 215 ---------------------------KLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLV 267 (466)
Q Consensus 215 ---------------------------~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~ 267 (466)
..+..+... ++|+.|++++|.++ .+|..+..+ +|+
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l------~~L~~L~l~~~~l~-----------~l~~~~~~~-~L~ 307 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL------TNVSSFSLVSVTIE-----------RVKDFSYNF-GWQ 307 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG------TTCSEEEEESCEEC-----------SCCBCCSCC-CCS
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCc------CcccEEEecCccch-----------hhhhhhccC-Ccc
Confidence 111111111 46788888888777 566666666 777
Q ss_pred EEeCCCCee--------------eeecccccccCCCCCCCCCCccEEEccCCCCCCCc--hhhhhhhhhhhhcCCCCc-e
Q 047429 268 ELDLESNQL--------------WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV--PTCLNNLSAMVQNGSSNV-I 330 (466)
Q Consensus 268 ~L~L~~n~l--------------~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~l~~~n~-~ 330 (466)
+|++++|.+ ++++|.+.+..+. ..+++|++|++++|.+++.. |..+.++++|+.|+++++ +
T Consensus 308 ~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp EEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred EEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 777777654 2444555444433 67788889999888888654 678888888888885443 4
Q ss_pred eeeeeeccCCCCcccccceeeeeecccc-hhhhccCCCcEEECCCCcCCcCCcHHHHhh------------cc-CCCccc
Q 047429 331 VEYRIQLIDDPEFDYQDRALLVWKPIDS-IYKITLGLPKSIDLSDNNLSGKIPEEITSL------------LI-GKIPRS 396 (466)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l------------~~-~~ip~~ 396 (466)
......+.....+..............+ ..+..+++|++|++++|++.+..|..+..+ +. +.+|..
T Consensus 386 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 4333322222222222221122222222 345667788888888888776666555433 22 468888
Q ss_pred ccCCCCCCeeeccCCcCcccCCCC
Q 047429 397 FSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 397 l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
+..+++|++|++++|++++..|..
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTT
T ss_pred hhcccCCCEEECCCCccccCChhh
Confidence 999999999999999999777765
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.9e-34 Score=296.64 Aligned_cols=411 Identities=19% Similarity=0.182 Sum_probs=218.0
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
++++|||++|.|+...+ ..|.++++|++|+|++|+|+.+ +...+.++++|++|+|++|+++.+++ ..|.. ++
T Consensus 53 ~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls~N~l~~l~~--~~f~~--L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLAL--GAFSG--LS 124 (635)
T ss_dssp TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECG--GGGTT--CT
T ss_pred CCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEccCCcCCCCCH--HHhcC--CC
Confidence 56677777777766555 5666777777777777766665 33333336777777777776666655 45555 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccC-CChhhhhcCCcccccc-cccccccccccCCC--------
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP-TPDYAFRNMTSLASLT-SLNYITGISKCSLP-------- 163 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~-------- 163 (466)
+|++|++++|.+++..+..|.++ ++|++|++++|.+.+. .|. .++.+++|++|+ +.|.+++.....+.
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCEEECCCCcCCCCChhhhhcC-cccCeeccccCccccCCCch-hhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 77777777777666555566666 6677777777766542 344 566666666666 66655443111000
Q ss_pred ---------------ccc--------------------------------------------------------------
Q 047429 164 ---------------ITL-------------------------------------------------------------- 166 (466)
Q Consensus 164 ---------------~~~-------------------------------------------------------------- 166 (466)
...
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 000
Q ss_pred -------------cCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhc----------
Q 047429 167 -------------VRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNF---------- 223 (466)
Q Consensus 167 -------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~---------- 223 (466)
......+....+++.+++.++.+..++ .+.....++.|++.+|.+.+..+..+..+
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 000000111112222222222222111 12233455556665555543322211110
Q ss_pred ---cccccccccceEecCCccccccC--CC-------Cc------ccccccCcccCCCCCCcEEeCCCCeeeeecccccc
Q 047429 224 ---SAGCAKKSLQSFMLQNNMLSGSL--PG-------VT------ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING 285 (466)
Q Consensus 224 ---~~~~~~~~L~~L~L~~n~l~~~~--~~-------~~------~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~ 285 (466)
......++|+.+++++|.+.... +. .. .-...++..+..+++|+.+++..+.. ...
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~------~~~ 435 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL------KQM 435 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEE------EST
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccc------ccc
Confidence 00011145677777777664211 10 00 00012344456667777777766543 111
Q ss_pred cCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-ee-eeeecc-CCCCcccccceeeeeecccchhhh
Q 047429 286 SATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VE-YRIQLI-DDPEFDYQDRALLVWKPIDSIYKI 362 (466)
Q Consensus 286 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 362 (466)
..+..+..+++++.++++.|.+.+..+..+..++.++.|+++.+- .. ...... ....+.......+.+.++++..+.
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 122334455555555555555555555555555555555533221 11 000000 001111111111122344555667
Q ss_pred ccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCCCCcccc-ccccccchhHHHHHH
Q 047429 363 TLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSSIPLQTF-EASAYKNWTHAYFQC 441 (466)
Q Consensus 363 ~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~-~~~~~~~~~~~~~~~ 441 (466)
.+++|++|+|++|++++ ..|..|.++++|++|+|++|+|++..|+... .+ ....+.+...|+|.|
T Consensus 516 ~l~~L~~L~Ls~N~l~~------------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFS------------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCTTCCEEECTTSCCCB------------CCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCC------------CChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhhCcCCEEEeeCCCCcc
Confidence 78889999999999884 3355689999999999999999977776542 22 445667788899999
Q ss_pred hhhhhhhhHHHHHHH
Q 047429 442 LNNVEYKLYAWIAVK 456 (466)
Q Consensus 442 ~~~~~~~~~~~~~~~ 456 (466)
.|+..+ +..|+...
T Consensus 582 ~C~~~~-~~~wl~~~ 595 (635)
T 4g8a_A 582 TCEHQS-FLQWIKDQ 595 (635)
T ss_dssp SGGGHH-HHHHHHHT
T ss_pred cCCcHH-HHHHHHhC
Confidence 999754 88888654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-34 Score=301.72 Aligned_cols=348 Identities=18% Similarity=0.206 Sum_probs=263.2
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEc-cCCCCCCc--------------------------------------
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSL-QGLDLREA-------------------------------------- 53 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L-s~n~l~~~-------------------------------------- 53 (466)
..++.|+|++|.+.+..| ..++.+++|++|+| ++|.+++.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578999999999999888 89999999999999 77753221
Q ss_pred ------------------------------------cchHHHHhcCCCCCCEEEcCCCCCCC------------------
Q 047429 54 ------------------------------------TDWLQVVITGLPSLRELDLSSSAPPK------------------ 79 (466)
Q Consensus 54 ------------------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 79 (466)
..+|..+.. +++|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 003556666 9999999999999998
Q ss_pred CCccccccc--cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc-ccc-CCChhhhhcCC-------ccccc
Q 047429 80 INYRSHSLV--NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ-LQG-PTPDYAFRNMT-------SLASL 148 (466)
Q Consensus 80 ~~~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~-l~~-~~~~~~~~~l~-------~L~~L 148 (466)
++. .++ . +++|++|++++|.+.+..|..+.++ ++|++|++++|. +++ .+|. .++.++ +|+.|
T Consensus 481 iP~---~l~f~~--L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 481 ENE---ELSWSN--LKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp TTS---CCCGGG--CTTCCEEEEESCTTCCSCCGGGGGC-SSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEE
T ss_pred CCh---hhhhcc--CCCCCEEECcCCCCCccChHHHhCC-CCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEE
Confidence 333 444 7 9999999999999999999999999 999999999998 887 6777 777666 99999
Q ss_pred c-cccccccccccCCCccccCccc--cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccc
Q 047429 149 T-SLNYITGISKCSLPITLVRPKY--AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSA 225 (466)
Q Consensus 149 ~-~~n~l~~~~~~~l~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 225 (466)
+ +.|.++. +| . .+..+++|++|++++|.++.+| .+..+++|++|++++|.++ .+|..+..+
T Consensus 554 ~Ls~N~L~~-----ip-------~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l-- 617 (876)
T 4ecn_A 554 YMGYNNLEE-----FP-------ASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF-- 617 (876)
T ss_dssp ECCSSCCCB-----CC-------CHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE--
T ss_pred EeeCCcCCc-----cC-------ChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhc--
Confidence 9 9999883 66 6 7899999999999999999888 8999999999999999998 666655554
Q ss_pred cccccc-cceEecCCccccccCCCCcccccccCcccCCCCC--CcEEeCCCCeeeeecccccccCCC---CCC--CCCCc
Q 047429 226 GCAKKS-LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSS--LVELDLESNQLWLRFNHINGSATP---KLC--SSPML 297 (466)
Q Consensus 226 ~~~~~~-L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~--L~~L~L~~n~l~l~~n~~~~~~~~---~~~--~l~~L 297 (466)
++ |+.|++++|.++ .+|..+..++. |+.|++++|. +.+.+|. .+. .+++|
T Consensus 618 ----~~~L~~L~Ls~N~L~-----------~lp~~~~~~~~~~L~~L~Ls~N~-------l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 618 ----TDQVEGLGFSHNKLK-----------YIPNIFNAKSVYVMGSVDFSYNK-------IGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ----CTTCCEEECCSSCCC-----------SCCSCCCTTCSSCEEEEECCSSC-------TTTTSSSCSSCTTTCCCCCE
T ss_pred ----cccCCEEECcCCCCC-----------cCchhhhccccCCCCEEECcCCc-------CCCccccchhhhccccCCCc
Confidence 56 999999999998 66777776654 9999999954 4554443 222 44589
Q ss_pred cEEEccCCCCCCCchhhhhhhhhhhhcCCCCc-eeeeeeeccCCC--------Ccccccceeeeeecccchhh-hccCCC
Q 047429 298 QVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV-IVEYRIQLIDDP--------EFDYQDRALLVWKPIDSIYK-ITLGLP 367 (466)
Q Consensus 298 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~L 367 (466)
+.|+|++|.+++..+..+..+++|+.|+++++ +...+....... .+.......+.+..++.... ..+++|
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTC
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCc
Confidence 99999999999655555668999999996554 332221111110 11111111111222222221 266777
Q ss_pred cEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccC------CcCcccCCCC
Q 047429 368 KSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSN------NNFSGKIPSS 420 (466)
Q Consensus 368 ~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~------N~l~~~ip~~ 420 (466)
+.|+|++|+++ .+|.++..+++|+.|+|++ |++.+.+|..
T Consensus 756 ~~L~Ls~N~L~-------------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 756 SNMDVSYNCFS-------------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CEEECCSSCCS-------------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CEEEeCCCCCC-------------ccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 77777777777 4677788999999999976 8888888876
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-32 Score=265.44 Aligned_cols=311 Identities=23% Similarity=0.290 Sum_probs=248.3
Q ss_pred cccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 4 SEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.+...+..+++|++|++++|.+... ..+..+++|++|++++|.++.+ +. +.. +++|++|++++|.++..+
T Consensus 35 ~~~~~~~~l~~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~n~i~~~---~~-~~~-l~~L~~L~L~~n~i~~~~-- 104 (347)
T 4fmz_A 35 TDVVTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDI---SP-LSN-LVKLTNLYIGTNKITDIS-- 104 (347)
T ss_dssp TSEECHHHHTTCSEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC---GG-GTT-CTTCCEEECCSSCCCCCG--
T ss_pred CCcccchhcccccEEEEeCCccccc---hhhhhcCCccEEEccCCccccc---hh-hhc-CCcCCEEEccCCcccCch--
Confidence 3445566889999999999999865 3488899999999999999887 33 444 999999999999998752
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
.+.. +++|++|++++|.++...+ +..+ ++|++|++++|...... . .+..+++|+.|+ +.|.+...
T Consensus 105 --~~~~--l~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~l~~n~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~----- 170 (347)
T 4fmz_A 105 --ALQN--LTNLRELYLNEDNISDISP--LANL-TKMYSLNLGANHNLSDL-S-PLSNMTGLNYLTVTESKVKDV----- 170 (347)
T ss_dssp --GGTT--CTTCSEEECTTSCCCCCGG--GTTC-TTCCEEECTTCTTCCCC-G-GGTTCTTCCEEECCSSCCCCC-----
T ss_pred --HHcC--CCcCCEEECcCCcccCchh--hccC-CceeEEECCCCCCcccc-c-chhhCCCCcEEEecCCCcCCc-----
Confidence 4666 9999999999999986544 7778 99999999999766443 4 588999999999 88888765
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
..+..+++|++|++++|.+.+++. +..+++|+.|++++|.+++..+ +... ++|++|++++|.+
T Consensus 171 --------~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~------~~L~~L~l~~n~l 233 (347)
T 4fmz_A 171 --------TPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANM------TRLNSLKIGNNKI 233 (347)
T ss_dssp --------GGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGC------TTCCEEECCSSCC
T ss_pred --------hhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcC------CcCCEEEccCCcc
Confidence 347889999999999999998765 7889999999999999986655 3333 6799999999999
Q ss_pred cccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 243 SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 243 ~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
+ .++. +..+++|++|++++|.+ + .+ +.+..+++|++|++++|.+++. ..+..+++|+
T Consensus 234 ~-----------~~~~-~~~l~~L~~L~l~~n~l-------~-~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 234 T-----------DLSP-LANLSQLTWLEIGTNQI-------S-DI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp C-----------CCGG-GTTCTTCCEEECCSSCC-------C-CC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred C-----------CCcc-hhcCCCCCEEECCCCcc-------C-CC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 8 4454 88899999999999765 2 22 5688999999999999999865 4588888888
Q ss_pred hcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCC
Q 047429 323 QNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSH 402 (466)
Q Consensus 323 ~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~ 402 (466)
.|+++++.. ....+..+..+++|++|++++|++++ ++. +..+++
T Consensus 291 ~L~L~~n~l----------------------~~~~~~~l~~l~~L~~L~L~~n~l~~-------------~~~-~~~l~~ 334 (347)
T 4fmz_A 291 SLFLNNNQL----------------------GNEDMEVIGGLTNLTTLFLSQNHITD-------------IRP-LASLSK 334 (347)
T ss_dssp EEECCSSCC----------------------CGGGHHHHHTCTTCSEEECCSSSCCC-------------CGG-GGGCTT
T ss_pred EEECcCCcC----------------------CCcChhHhhccccCCEEEccCCcccc-------------ccC-hhhhhc
Confidence 877554432 22334455678888899999988883 322 677888
Q ss_pred CCeeeccCCcCc
Q 047429 403 LGVVNLSNNNFS 414 (466)
Q Consensus 403 L~~L~Ls~N~l~ 414 (466)
|++|++++|.++
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 999999988875
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=278.72 Aligned_cols=324 Identities=19% Similarity=0.253 Sum_probs=241.3
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCC-ccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKIN-YRS 84 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~ 84 (466)
++.|.++++|++|++++|.+++..+ ..|.++++|++|+|++|.++.++ .. . +++|++|++++|.+++.. +
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp---~~--~-l~~L~~L~L~~N~l~~~~~p-- 108 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLVKIS---CH--P-TVNLKHLDLSFNAFDALPIC-- 108 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCCEEE---CC--C-CCCCSEEECCSSCCSSCCCC--
T ss_pred hhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCceeecC---cc--c-cCCccEEeccCCccccccch--
Confidence 3578999999999999999998877 88999999999999999999773 33 4 999999999999998753 3
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC--cEEEccCCcc--ccCCChhhhhc-------------------
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL--VYLDLSNNQL--QGPTPDYAFRN------------------- 141 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L--~~L~Ls~n~l--~~~~~~~~~~~------------------- 141 (466)
..++. +++|++|++++|.+++ ..+..+ ++| ++|++++|.+ .+..|. .+..
T Consensus 109 ~~~~~--l~~L~~L~L~~n~l~~---~~~~~l-~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 109 KEFGN--MSQLKFLGLSTTHLEK---SSVLPI-AHLNISKVLLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp GGGGG--CTTCCEEEEEESSCCG---GGGGGG-TTSCEEEEEEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCC
T ss_pred hhhcc--CCcceEEEecCcccch---hhcccc-ccceeeEEEeecccccccccccc-cccccccceEEEEeccCcchhhh
Confidence 46778 9999999999999986 345666 777 9999999988 555554 4443
Q ss_pred -------CCcccc---------------------------------------------------------cc-ccccccc
Q 047429 142 -------MTSLAS---------------------------------------------------------LT-SLNYITG 156 (466)
Q Consensus 142 -------l~~L~~---------------------------------------------------------L~-~~n~l~~ 156 (466)
+++|+. |+ +.|.+++
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence 333333 33 3333332
Q ss_pred ccccCCCccccCccccc-----cCCCc--------------------------cCEEecCCCcCCCCCcccCCCCCcCEE
Q 047429 157 ISKCSLPITLVRPKYAF-----SNVTS--------------------------LMDLDLSKNQITGIPKSFGDMCCLKTL 205 (466)
Q Consensus 157 ~~~~~l~~~~~~~~~~l-----~~l~~--------------------------L~~L~Ls~n~l~~~~~~l~~l~~L~~L 205 (466)
. +| ..+ ..+++ |+.|++++|.+..++ .+..+++|++|
T Consensus 262 ~----~p-------~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L 329 (520)
T 2z7x_B 262 Q----LD-------FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHL 329 (520)
T ss_dssp C----CC-------CCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEE
T ss_pred c----cc-------cchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEE
Confidence 2 33 333 44444 445555555444322 12678899999
Q ss_pred EeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc
Q 047429 206 KIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING 285 (466)
Q Consensus 206 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~ 285 (466)
++++|.+++..|..+..+ ++|+.|++++|++++.. .+|..+..+++|++|++++|.+ .+
T Consensus 330 ~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~l~--------~~~~~~~~l~~L~~L~Ls~N~l-------~~ 388 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHL------TELETLILQMNQLKELS--------KIAEMTTQMKSLQQLDISQNSV-------SY 388 (520)
T ss_dssp ECCSSCCCTTTTTTCCCC------SSCCEEECCSSCCCBHH--------HHHHHHTTCTTCCEEECCSSCC-------BC
T ss_pred EeECCccChhhhhhhccC------CCCCEEEccCCccCccc--------cchHHHhhCCCCCEEECCCCcC-------Cc
Confidence 999999998777766555 68999999999998321 3456688999999999999554 44
Q ss_pred cCCC-CCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhcc
Q 047429 286 SATP-KLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITL 364 (466)
Q Consensus 286 ~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (466)
.+|. .+..+++|++|++++|.+++..|..+. ++|+.|+++++-.. .++. ....+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~----------------------~ip~-~~~~l 443 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK----------------------SIPK-QVVKL 443 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC----------------------CCCG-GGGGC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc----------------------ccch-hhhcC
Confidence 3554 478889999999999999887777664 67877775544321 1222 22378
Q ss_pred CCCcEEECCCCcCCcCCcHHHHhhccCCCccc-ccCCCCCCeeeccCCcCccc
Q 047429 365 GLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS-FSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 365 ~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ 416 (466)
++|++|++++|+++ .+|.. +..+++|++|++++|++++.
T Consensus 444 ~~L~~L~L~~N~l~-------------~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 444 EALQELNVASNQLK-------------SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCEEECCCCcCC-------------ccCHHHhccCCcccEEECcCCCCccc
Confidence 99999999999999 44544 88999999999999999853
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=298.04 Aligned_cols=247 Identities=20% Similarity=0.201 Sum_probs=177.2
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
.+..|.++++|++|||++|...+..++..|.++++|++|+|++|.++... +..+.. +++|++|+|++|.+++..+..
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~--p~~~~~-l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH--PDAFQG-LFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC--TTSSCS-CSSCCCEECTTCCCSSCCSTT
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC--HhHccC-CcccCEeeCcCCCCCcccccC
Confidence 35678899999999999996554442278999999999999999998773 334444 999999999999998754421
Q ss_pred cccccCCCCCccEEEcCCCCCCchhh-hhhhcccCCCcEEEccCCccccCCChhhhhcC--Ccccccc-ccccccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAY-HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNM--TSLASLT-SLNYITGISKC 160 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~-~~n~l~~~~~~ 160 (466)
..+.. +++|++|++++|.+++..+ ..|.++ ++|++|++++|.+.+..+. .+..+ ++|+.|+ +.|.+.+....
T Consensus 117 ~~~~~--L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 117 GYFRN--LKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp CCCSS--CSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred ccccc--cCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCeeCHH-HcccccCCccceEECCCCcccccccc
Confidence 34667 9999999999999987654 568888 9999999999999877777 77766 6677777 66665543110
Q ss_pred C--------------------------CCcccc-----------------------------CccccccC--CCccCEEe
Q 047429 161 S--------------------------LPITLV-----------------------------RPKYAFSN--VTSLMDLD 183 (466)
Q Consensus 161 ~--------------------------l~~~~~-----------------------------~~~~~l~~--l~~L~~L~ 183 (466)
. .+..+. .....|.. .++|+.|+
T Consensus 193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 0 000000 00001111 25788889
Q ss_pred cCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCC
Q 047429 184 LSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCR 262 (466)
Q Consensus 184 Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~ 262 (466)
+++|.+.+ .+..+..+++|+.|++++|.+++..+..+..+ ++|+.|++++|.+++..+ ..+..
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l------~~L~~L~Ls~N~l~~~~~----------~~~~~ 336 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL------DNLQVLNLSYNLLGELYS----------SNFYG 336 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC------SSCCEEEEESCCCSCCCS----------CSCSS
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC------CCCCEEECCCCCCCccCH----------HHhcC
Confidence 98888888 56678889999999999999988777776665 679999999999874433 34555
Q ss_pred CCCCcEEeCCCC
Q 047429 263 PSSLVELDLESN 274 (466)
Q Consensus 263 l~~L~~L~L~~n 274 (466)
+++|++|++++|
T Consensus 337 l~~L~~L~L~~N 348 (844)
T 3j0a_A 337 LPKVAYIDLQKN 348 (844)
T ss_dssp CTTCCEEECCSC
T ss_pred CCCCCEEECCCC
Confidence 555555555553
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-33 Score=273.75 Aligned_cols=310 Identities=20% Similarity=0.210 Sum_probs=204.1
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.++++++|++++|.++.... ..+..+++|++|++++|.++... +..+.. +++|++|++++|.++..++ ..+..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~- 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEID--TYAFAY-AHTIQKLYMGFNAIRYLPP--HVFQN- 115 (390)
T ss_dssp GGCCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCCCCCT--TTTTT-
T ss_pred ccCCceEEEecCCchhhCCh-hHhcccccCcEEECCCCcccccC--hhhccC-CCCcCEEECCCCCCCcCCH--HHhcC-
Confidence 45788888888888876655 66788888888888888887762 223344 8888888888888887766 45666
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
+++|++|++++|.++...+..|..+ ++|++|++++|.+.+..+. .++.+++|+.|+ +.|.++..
T Consensus 116 -l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~------------ 180 (390)
T 3o6n_A 116 -VPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV------------ 180 (390)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC------------
T ss_pred -CCCCCEEECCCCccCcCCHHHhcCC-CCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc------------
Confidence 7888888888888886555556777 8888888888888766665 777888888888 77777664
Q ss_pred cccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
.+..+++|++|++++|.++.++ ..++|++|++++|.++..... .+++|+.|++++|.+++
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~---------~~~~L~~L~l~~n~l~~----- 240 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGP---------VNVELTILKLQHNNLTD----- 240 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEECC---------CCSSCCEEECCSSCCCC-----
T ss_pred --ccccccccceeecccccccccC----CCCcceEEECCCCeeeecccc---------ccccccEEECCCCCCcc-----
Confidence 2445667777777777766532 234677777777776643221 11457777777777762
Q ss_pred cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 250 ~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
. ..+..+++|++|++++| .+++..|..+..+++|++|++++|.+++ +|..+..+++|+.|+++++
T Consensus 241 ------~-~~l~~l~~L~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 241 ------T-AWLLNYPGLVEVDLSYN-------ELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ------C-GGGGGCTTCSEEECCSS-------CCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred ------c-HHHcCCCCccEEECCCC-------cCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 2 24666677777777774 3344556667777777777777777764 3444455556655553332
Q ss_pred eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 330 IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
... .+ +.....++.|+.|++++|+++ .+| +..+++|+.|+++
T Consensus 306 ~l~----------------------~~-~~~~~~l~~L~~L~L~~N~i~-------------~~~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 306 HLL----------------------HV-ERNQPQFDRLENLYLDHNSIV-------------TLK--LSTHHTLKNLTLS 347 (390)
T ss_dssp CCC----------------------CC-GGGHHHHTTCSEEECCSSCCC-------------CCC--CCTTCCCSEEECC
T ss_pred cce----------------------ec-CccccccCcCCEEECCCCccc-------------eeC--chhhccCCEEEcC
Confidence 110 01 111234556677777777766 222 4556677777777
Q ss_pred CCcCcc
Q 047429 410 NNNFSG 415 (466)
Q Consensus 410 ~N~l~~ 415 (466)
+|++++
T Consensus 348 ~N~~~~ 353 (390)
T 3o6n_A 348 HNDWDC 353 (390)
T ss_dssp SSCEEH
T ss_pred CCCccc
Confidence 776653
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-32 Score=265.73 Aligned_cols=291 Identities=22% Similarity=0.211 Sum_probs=238.8
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
...+..+++|++|++++|.+++..+ ..|..+++|++|++++|.++.. +...+..+++|++|++++|.++..++ .
T Consensus 62 ~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~--~ 135 (390)
T 3o6n_A 62 AALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERNDLSSLPR--G 135 (390)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCCCCCCT--T
T ss_pred hhHhcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCCCCCcC---CHHHhcCCCCCCEEECCCCccCcCCH--H
Confidence 3457889999999999999998776 7899999999999999999887 33444449999999999999998776 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
.+.. +++|++|++++|.+++..+..+..+ ++|++|++++|.+++. .+..+++|+.|+ +.|.++..
T Consensus 136 ~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~n~l~~~------- 201 (390)
T 3o6n_A 136 IFHN--TPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLLSTL------- 201 (390)
T ss_dssp TTTT--CTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBC----CGGGCTTCSEEECCSSCCSEE-------
T ss_pred HhcC--CCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCcc----ccccccccceeeccccccccc-------
Confidence 5677 8999999999999998888889998 9999999999999854 355788999999 88876653
Q ss_pred cccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
...++|++|++++|.+..+|... .++|++|++++|.+++. ..+..+ ++|++|++++|.+++
T Consensus 202 ---------~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l------~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 202 ---------AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNY------PGLVEVDLSYNELEK 262 (390)
T ss_dssp ---------ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGC------TTCSEEECCSSCCCE
T ss_pred ---------CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCC------CCccEEECCCCcCCC
Confidence 33468999999999999876533 57999999999999864 234333 689999999999984
Q ss_pred cCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhc
Q 047429 245 SLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQN 324 (466)
Q Consensus 245 ~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 324 (466)
. .|..+..+++|++|++++|++ ..++..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 263 ~----------~~~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 263 I----------MYHPFVKMQRLERLYISNNRL--------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp E----------ESGGGTTCSSCCEEECCSSCC--------CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred c----------ChhHccccccCCEEECCCCcC--------cccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 3 356789999999999999766 345666788999999999999998 567778999999999
Q ss_pred CCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCc
Q 047429 325 GSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSG 379 (466)
Q Consensus 325 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 379 (466)
+++++... .. ....++.|+.|++++|.+..
T Consensus 324 ~L~~N~i~----------------------~~---~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 324 YLDHNSIV----------------------TL---KLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCC----------------------CC---CCCTTCCCSEEECCSSCEEH
T ss_pred ECCCCccc----------------------ee---CchhhccCCEEEcCCCCccc
Confidence 85544321 01 13467889999999999985
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-32 Score=280.04 Aligned_cols=332 Identities=21% Similarity=0.219 Sum_probs=245.4
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
++.|.++++|++|++++|.+++..+ ..|.++++|++|+|++|.++.++ .. . +++|++|++++|.++..+.. .
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp---~~--~-l~~L~~L~Ls~N~l~~l~~p-~ 140 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNIS---CC--P-MASLRHLDLSFNDFDVLPVC-K 140 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEEC---SC--C-CTTCSEEECCSSCCSBCCCC-G
T ss_pred hhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccC---cc--c-cccCCEEECCCCCccccCch-H
Confidence 4678999999999999999998877 88999999999999999999773 33 4 99999999999999886521 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC--cEEEccCCcc--ccCCChhhhhcCC------------------
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL--VYLDLSNNQL--QGPTPDYAFRNMT------------------ 143 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L--~~L~Ls~n~l--~~~~~~~~~~~l~------------------ 143 (466)
.+.. +++|++|++++|.++.. .+..+ ++| ++|++++|.+ .+..|. .+..+.
T Consensus 141 ~~~~--l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 141 EFGN--LTKLTFLGLSAAKFRQL---DLLPV-AHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp GGGG--CTTCCEEEEECSBCCTT---TTGGG-TTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSCCCCCC
T ss_pred hhcc--cCcccEEecCCCccccC---chhhh-hhceeeEEEeecccccccccCcc-cccccCcceEEEEecCccchhhhh
Confidence 6777 99999999999999863 45555 666 9999999988 555554 444322
Q ss_pred ---------------------------------------------------------------cccccc-cccccccccc
Q 047429 144 ---------------------------------------------------------------SLASLT-SLNYITGISK 159 (466)
Q Consensus 144 ---------------------------------------------------------------~L~~L~-~~n~l~~~~~ 159 (466)
+|++|+ +.|.+++.
T Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-- 291 (562)
T 3a79_B 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER-- 291 (562)
T ss_dssp EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSC--
T ss_pred hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecc--
Confidence 445555 55555533
Q ss_pred cCCCccccCccccccCC--------------------------CccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 160 CSLPITLVRPKYAFSNV--------------------------TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 160 ~~l~~~~~~~~~~l~~l--------------------------~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
+|...... ....+ .+|++|++++|.+..++ ....+++|++|++++|.++
T Consensus 292 --ip~~~~~~--~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 292 --IDREEFTY--SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp --CCCCCCCC--CSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCC
T ss_pred --ccchhhhc--ccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCCCccc
Confidence 33111000 00111 35777888888776532 1267889999999999999
Q ss_pred CccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCC-CCC
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATP-KLC 292 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~-~~~ 292 (466)
+..|..+..+ ++|+.|++++|++++.. .+|..+..+++|++|++++|. +++.+|. .+.
T Consensus 367 ~~~~~~~~~l------~~L~~L~L~~N~l~~~~--------~~~~~~~~l~~L~~L~l~~N~-------l~~~~~~~~~~ 425 (562)
T 3a79_B 367 DSVFQGCSTL------KRLQTLILQRNGLKNFF--------KVALMTKNMSSLETLDVSLNS-------LNSHAYDRTCA 425 (562)
T ss_dssp TTTTTTCCSC------SSCCEEECCSSCCCBTT--------HHHHTTTTCTTCCEEECTTSC-------CBSCCSSCCCC
T ss_pred cchhhhhccc------CCCCEEECCCCCcCCcc--------cchhhhcCCCCCCEEECCCCc-------CCCccChhhhc
Confidence 8777766555 67999999999998321 334568889999999999954 4553554 578
Q ss_pred CCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEEC
Q 047429 293 SSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDL 372 (466)
Q Consensus 293 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 372 (466)
.+++|++|++++|.+++..|..+. ++|+.|+++++... .++... ..++.|++|+|
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~----------------------~ip~~~-~~l~~L~~L~L 480 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM----------------------SIPKDV-THLQALQELNV 480 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC----------------------CCCTTT-TSSCCCSEEEC
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc----------------------ccChhh-cCCCCCCEEEC
Confidence 889999999999999877776654 67777775544321 122222 37889999999
Q ss_pred CCCcCCcCCcHHHHhhccCCCccc-ccCCCCCCeeeccCCcCcccCC
Q 047429 373 SDNNLSGKIPEEITSLLIGKIPRS-FSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 373 s~N~l~~~ip~~i~~l~~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 481 ~~N~l~-------------~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 481 ASNQLK-------------SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSSCCC-------------CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCC-------------CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999 45555 8899999999999999986433
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-32 Score=283.08 Aligned_cols=359 Identities=17% Similarity=0.199 Sum_probs=231.0
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|.++++|++|++++|.+++..+ ..|..+++|++|++++|.+++.. +..+.. +++|++|++++|.++..... .
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~~~-~ 117 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLS--SSWFGP-LSSLKYLNLMGNPYQTLGVT-S 117 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCC--HHHHTT-CTTCCEEECTTCCCSSSCSS-C
T ss_pred hhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccC--HHHhcc-CCCCcEEECCCCcccccchh-h
Confidence 4678999999999999999998877 78999999999999999999883 333555 99999999999999865321 3
Q ss_pred ccccCCCCCccEEEcCCCC-CCchhhhhhhcccCCCcEEEccCCccccCCChhhhhc-----------------------
Q 047429 86 SLVNSSSSSLTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN----------------------- 141 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~----------------------- 141 (466)
.+.. +++|++|++++|. +....+..+..+ ++|++|++++|.+.+..|. .++.
T Consensus 118 ~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 118 LFPN--LTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp SCTT--CTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHH
T ss_pred hhhc--cCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChh-hhhccccCceEecccCcccccchhhHh
Confidence 5666 8889999999888 444444577777 8888888888888766665 5544
Q ss_pred -CCcccccc-cccccccccccCCCc-----cc------------------------------------------------
Q 047429 142 -MTSLASLT-SLNYITGISKCSLPI-----TL------------------------------------------------ 166 (466)
Q Consensus 142 -l~~L~~L~-~~n~l~~~~~~~l~~-----~~------------------------------------------------ 166 (466)
+++|+.|+ +.|.+++......+. .+
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 44555555 555555431100000 00
Q ss_pred --------------------------cCccccccCCCccCEEecCCCcCCCCCccc-CCCCCcCEEEeeCCcCCCccchh
Q 047429 167 --------------------------VRPKYAFSNVTSLMDLDLSKNQITGIPKSF-GDMCCLKTLKIHDNILTAKLPEL 219 (466)
Q Consensus 167 --------------------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~ 219 (466)
...+..+...++|+.|++++|.++.+|..+ ..+++|++|++++|.+++..|..
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc
Confidence 000000111245666666677666666544 46778888888888877655432
Q ss_pred ---hhhccccccccccceEecCCccccccCCCCcccccccC---cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCC
Q 047429 220 ---FLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP---KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293 (466)
Q Consensus 220 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp---~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~ 293 (466)
+..+ ++|+.|++++|+++ .++ ..+..+++|++|++++|++ ..+|..+..
T Consensus 354 ~~~~~~l------~~L~~L~Ls~N~l~-----------~~~~~~~~~~~l~~L~~L~Ls~N~l--------~~lp~~~~~ 408 (549)
T 2z81_A 354 SACKGAW------PSLQTLVLSQNHLR-----------SMQKTGEILLTLKNLTSLDISRNTF--------HPMPDSCQW 408 (549)
T ss_dssp HTCTTSS------TTCCEEECTTSCCC-----------CHHHHHHHGGGCTTCCEEECTTCCC--------CCCCSCCCC
T ss_pred hhhhhcc------ccCcEEEccCCccc-----------ccccchhhhhcCCCCCEEECCCCCC--------ccCChhhcc
Confidence 2222 46788888888776 322 2366677777777777554 256666667
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc-eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEEC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV-IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDL 372 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 372 (466)
+++|++|++++|.+++. |..+. ++|+.|+++++ +.+.. ...+.+.......+.+..++. ...++.|++|+|
T Consensus 409 ~~~L~~L~Ls~N~l~~l-~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~L 480 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRVV-KTCIP--QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKI 480 (549)
T ss_dssp CTTCCEEECTTSCCSCC-CTTSC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEEC
T ss_pred cccccEEECCCCCcccc-cchhc--CCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC--cccCccCCEEec
Confidence 77777777777776632 32221 35555553333 22111 001111111111111222222 246899999999
Q ss_pred CCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCC
Q 047429 373 SDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 373 s~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
++|++++ ..|..+..+++|+.|++++|++++..|
T Consensus 481 s~N~l~~------------~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 481 SRNQLKS------------VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCCC------------CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCC------------cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999995 334568899999999999999987655
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.5e-31 Score=266.77 Aligned_cols=328 Identities=22% Similarity=0.264 Sum_probs=177.2
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
..+.+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. +. +.. +++|++|++++|.+++.++
T Consensus 60 ~l~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~-~~~-l~~L~~L~L~~n~l~~~~~-- 129 (466)
T 1o6v_A 60 SIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADI---TP-LAN-LTNLTGLTLFNNQITDIDP-- 129 (466)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC---GG-GTT-CTTCCEEECCSSCCCCCGG--
T ss_pred cCcchhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccC---hh-hcC-CCCCCEEECCCCCCCCChH--
Confidence 34456677777777777777765432 67777777777777777766 32 444 7777777777777776532
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCC
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLP 163 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~ 163 (466)
+.. +++|++|++++|.+.+.. .+..+ ++|++|++++ .+.+ .. .+.++++|+.|+ +.|.++..
T Consensus 130 --~~~--l~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~l~~-~~~~--~~-~~~~l~~L~~L~l~~n~l~~~------ 192 (466)
T 1o6v_A 130 --LKN--LTNLNRLELSSNTISDIS--ALSGL-TSLQQLSFGN-QVTD--LK-PLANLTTLERLDISSNKVSDI------ 192 (466)
T ss_dssp --GTT--CTTCSEEEEEEEEECCCG--GGTTC-TTCSEEEEEE-SCCC--CG-GGTTCTTCCEEECCSSCCCCC------
T ss_pred --HcC--CCCCCEEECCCCccCCCh--hhccC-CcccEeecCC-cccC--ch-hhccCCCCCEEECcCCcCCCC------
Confidence 445 777777777777766432 24444 4555555432 2221 11 355566666666 66665543
Q ss_pred ccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+++|++|++++|.+.+++. ++.+++|++|++++|.+++. + .+..+ ++|+.|++++|.++
T Consensus 193 -------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~l~~l------~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 193 -------SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-G-TLASL------TNLTDLDLANNQIS 256 (466)
T ss_dssp -------GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-G-GGGGC------TTCSEEECCSSCCC
T ss_pred -------hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-h-hhhcC------CCCCEEECCCCccc
Confidence 235556666666666666665433 45566666666666665542 1 12222 35666666666655
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ 323 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 323 (466)
+ ++. +..+++|++|++++|.+ ++ ++. +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 257 ~-----------~~~-~~~l~~L~~L~l~~n~l-------~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 257 N-----------LAP-LSGLTKLTELKLGANQI-------SN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp C-----------CGG-GTTCTTCSEEECCSSCC-------CC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred c-----------chh-hhcCCCCCEEECCCCcc-------Cc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 2 221 44555555555555433 11 111 4444444444444444443322 444444444
Q ss_pred cCCCCce-eeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCC
Q 047429 324 NGSSNVI-VEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSH 402 (466)
Q Consensus 324 l~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~ 402 (466)
|+++++. .+.. .+...+.+.......+.+.+. ..+..+++|+.|++++|++++. .| +..+++
T Consensus 314 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~------------~~--~~~l~~ 376 (466)
T 1o6v_A 314 LTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL------------TP--LANLTR 376 (466)
T ss_dssp EECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC------------GG--GTTCTT
T ss_pred EECcCCcCCCch-hhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc------------ch--hhcCCC
Confidence 4432221 1100 000000000000000001111 2345678888888888888742 23 778899
Q ss_pred CCeeeccCCcCcc
Q 047429 403 LGVVNLSNNNFSG 415 (466)
Q Consensus 403 L~~L~Ls~N~l~~ 415 (466)
|+.|++++|.+++
T Consensus 377 L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 377 ITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCCEEEEC
T ss_pred CCEEeccCCcccC
Confidence 9999999999985
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=271.24 Aligned_cols=274 Identities=19% Similarity=0.159 Sum_probs=236.0
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
+..|.++++|++|+|++|.+++..+ ..|.++++|++|+|++|.++.+ +...+..+++|++|++++|.+....+ .
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~--~ 122 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLI---PLGVFTGLSNLTKLDISENKIVILLD--Y 122 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSC---CTTSSTTCTTCCEEECTTSCCCEECT--T
T ss_pred HhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCcc---CcccccCCCCCCEEECCCCccccCCh--h
Confidence 4678999999999999999998877 8899999999999999999988 44544459999999999999988766 5
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPI 164 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~ 164 (466)
.+.. +++|++|++++|.+++..+..|..+ ++|++|++++|.+++..+. .+..+++|+.|+ +.|.+... .+
T Consensus 123 ~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~----~~- 193 (477)
T 2id5_A 123 MFQD--LYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAI----RD- 193 (477)
T ss_dssp TTTT--CTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEE----CT-
T ss_pred Hccc--cccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEe----Ch-
Confidence 6777 9999999999999998888899999 9999999999999865545 899999999999 99988876 33
Q ss_pred cccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 165 TLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 165 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+++|++|++++|...+ ++.......+|++|++++|.+++..+..+..+ ++|+.|++++|.++
T Consensus 194 ------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 194 ------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL------VYLRFLNLSYNPIS 261 (477)
T ss_dssp ------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC------TTCCEEECCSSCCC
T ss_pred ------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc------cccCeeECCCCcCC
Confidence 578899999999999988766 77666667799999999999997666666555 68999999999998
Q ss_pred ccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ 323 (466)
Q Consensus 244 ~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 323 (466)
+.. +..+..+++|+.|++++| .+.+..+..+..+++|++|+|++|.+++..+..|..+++|+.
T Consensus 262 ~~~----------~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 262 TIE----------GSMLHELLRLQEIQLVGG-------QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp EEC----------TTSCTTCTTCCEEECCSS-------CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred ccC----------hhhccccccCCEEECCCC-------ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 332 245889999999999995 556677889999999999999999999888888888877733
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2e-31 Score=276.68 Aligned_cols=310 Identities=20% Similarity=0.212 Sum_probs=235.9
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.+++++.+++++|.+....+ ..+..+++|++|+|++|.++++. +..+.. +++|++|+|++|.+++.++ ..+..
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~- 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEID--TYAFAY-AHTIQKLYMGFNAIRYLPP--HVFQN- 121 (597)
T ss_dssp GGCCCSEEEESSCEESEECT-HHHHHCCCCSEEECTTSCCCEEC--TTTTTT-CTTCCEEECCSSCCCCCCT--TTTTT-
T ss_pred cCCCceEEEeeCCCCCCcCH-HHHccCCCCcEEECCCCCCCCCC--hHHhcC-CCCCCEEECCCCcCCCCCH--HHHcC-
Confidence 46788999999999987766 78899999999999999998873 334444 9999999999999998877 56777
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
+++|++|++++|.++...+..|..+ ++|++|++++|.+.+..|. .++.+++|+.|+ +.|.+++.
T Consensus 122 -l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~------------ 186 (597)
T 3oja_B 122 -VPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV------------ 186 (597)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBC------------
T ss_pred -CCCCCEEEeeCCCCCCCCHHHhccC-CCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCc------------
Confidence 8999999999999997776677888 9999999999999987777 899999999999 99988875
Q ss_pred cccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
.+..+++|+.|++++|.+++++ ..++|+.|++++|.++...+. .+++|+.|++++|.+++
T Consensus 187 --~~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~---------~~~~L~~L~L~~n~l~~----- 246 (597)
T 3oja_B 187 --DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGP---------VNVELTILKLQHNNLTD----- 246 (597)
T ss_dssp --CGGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECS---------CCSCCCEEECCSSCCCC-----
T ss_pred --ChhhhhhhhhhhcccCcccccc----CCchhheeeccCCcccccccc---------cCCCCCEEECCCCCCCC-----
Confidence 2455678888888888776632 345688888888877643332 12468888888887763
Q ss_pred cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 250 ~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
+..+..+++|+.|++++| .+.+..|..++.+++|++|+|++|.+++ +|..+..+++|+.|+++++
T Consensus 247 -------~~~l~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 247 -------TAWLLNYPGLVEVDLSYN-------ELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp -------CGGGGGCTTCSEEECCSS-------CCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred -------ChhhccCCCCCEEECCCC-------ccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 234667778888888774 4455667777778888888888888775 4555666777777775443
Q ss_pred eeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 330 IVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
... .+ +..+..++.|+.|+|++|.++ .+| +..+++|+.|+++
T Consensus 312 ~l~----------------------~i-~~~~~~l~~L~~L~L~~N~l~-------------~~~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 312 HLL----------------------HV-ERNQPQFDRLENLYLDHNSIV-------------TLK--LSTHHTLKNLTLS 353 (597)
T ss_dssp CCC----------------------CC-GGGHHHHTTCSEEECCSSCCC-------------CCC--CCTTCCCSEEECC
T ss_pred CCC----------------------cc-CcccccCCCCCEEECCCCCCC-------------CcC--hhhcCCCCEEEee
Confidence 221 11 122356778899999999988 232 6678899999999
Q ss_pred CCcCcc
Q 047429 410 NNNFSG 415 (466)
Q Consensus 410 ~N~l~~ 415 (466)
+|++.+
T Consensus 354 ~N~~~~ 359 (597)
T 3oja_B 354 HNDWDC 359 (597)
T ss_dssp SSCEEH
T ss_pred CCCCCC
Confidence 998875
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.5e-32 Score=282.32 Aligned_cols=289 Identities=20% Similarity=0.256 Sum_probs=241.8
Q ss_pred cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhc
Q 047429 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH 115 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 115 (466)
.+.+++.|++++|.+..+ +..++..+++|++|++++|.+++.++ ..+.. +++|++|++++|.+++..+..|..
T Consensus 49 ~l~~l~~l~l~~~~l~~l---p~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLNDLQIEEIDT--YAFAY--AHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCEESEE---CTHHHHHCCCCSEEECTTSCCCEECT--TTTTT--CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCCCCCc---CHHHHccCCCCcEEECCCCCCCCCCh--HHhcC--CCCCCEEECCCCcCCCCCHHHHcC
Confidence 367899999999999888 55555449999999999999998776 57777 999999999999999988888999
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK 194 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 194 (466)
+ ++|++|+|++|.+.+..+. .|+++++|+.|+ +.|.+++. .| ..+..+++|++|++++|.+++++
T Consensus 122 l-~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~- 187 (597)
T 3oja_B 122 V-PLLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERI----ED-------DTFQATTSLQNLQLSSNRLTHVD- 187 (597)
T ss_dssp C-TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBC----CT-------TTTTTCTTCCEEECTTSCCSBCC-
T ss_pred C-CCCCEEEeeCCCCCCCCHH-HhccCCCCCEEEeeCCcCCCC----Ch-------hhhhcCCcCcEEECcCCCCCCcC-
Confidence 9 9999999999999955554 789999999999 99999886 45 67899999999999999999864
Q ss_pred ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCC
Q 047429 195 SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESN 274 (466)
Q Consensus 195 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n 274 (466)
+..+++|++|++++|.+++.. .+.+|+.|++++|.++ .+|..+ .++|+.|++++|
T Consensus 188 -~~~l~~L~~L~l~~n~l~~l~-----------~~~~L~~L~ls~n~l~-----------~~~~~~--~~~L~~L~L~~n 242 (597)
T 3oja_B 188 -LSLIPSLFHANVSYNLLSTLA-----------IPIAVEELDASHNSIN-----------VVRGPV--NVELTILKLQHN 242 (597)
T ss_dssp -GGGCTTCSEEECCSSCCSEEE-----------CCTTCSEEECCSSCCC-----------EEECSC--CSCCCEEECCSS
T ss_pred -hhhhhhhhhhhcccCcccccc-----------CCchhheeeccCCccc-----------cccccc--CCCCCEEECCCC
Confidence 567889999999999987532 1257999999999998 333332 268999999997
Q ss_pred eeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCce-eeeeeeccCCCCcccccceeeee
Q 047429 275 QLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVI-VEYRIQLIDDPEFDYQDRALLVW 353 (466)
Q Consensus 275 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~ 353 (466)
.+ + .+..+..+++|++|+|++|.+++..|..|+++++|+.|+++++. ...
T Consensus 243 ~l-------~--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------------------- 293 (597)
T 3oja_B 243 NL-------T--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-------------------- 293 (597)
T ss_dssp CC-------C--CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--------------------
T ss_pred CC-------C--CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--------------------
Confidence 65 3 35778999999999999999999999999999999999965543 221
Q ss_pred ecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 354 KPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
+.....+++|+.|+|++|.++ .+|.++..+++|++|+|++|.+++.
T Consensus 294 ----~~~~~~l~~L~~L~Ls~N~l~-------------~i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 294 ----NLYGQPIPTLKVLDLSHNHLL-------------HVERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp ----ECSSSCCTTCCEEECCSSCCC-------------CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred ----CcccccCCCCcEEECCCCCCC-------------ccCcccccCCCCCEEECCCCCCCCc
Confidence 112245789999999999999 5566678889999999999999843
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=6.1e-31 Score=263.45 Aligned_cols=341 Identities=17% Similarity=0.120 Sum_probs=232.3
Q ss_pred cccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 4 SEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.++..++++++|++|++++|.+++. + .+..+++|++|++++|.++++ + +.. +++|++|++++|.+++.+
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~---~--~~~-l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL---D--LSQ-NTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC---C--CTT-CTTCSEEECCSSCCSCCC--
T ss_pred ccccChhHcCCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE---c--ccc-CCCCCEEECcCCCCceee--
Confidence 4455678899999999999999875 3 588999999999999999887 3 444 999999999999998752
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
+.. +++|++|++++|.+++. + +..+ ++|++|++++|.+++. .++.+++|+.|+ +.|...+.
T Consensus 102 ---~~~--l~~L~~L~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l----~l~~l~~L~~L~l~~n~~~~~----- 163 (457)
T 3bz5_A 102 ---VTP--LTKLTYLNCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITK----- 163 (457)
T ss_dssp ---CTT--CTTCCEEECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCC----CCTTCTTCCEEECTTCSCCCC-----
T ss_pred ---cCC--CCcCCEEECCCCcCCee-c--CCCC-CcCCEEECCCCcccee----ccccCCcCCEEECCCCCcccc-----
Confidence 556 89999999999999874 3 7777 9999999999999864 367888999999 77743332
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
..+..+++|++|++++|.++++| +..+++|+.|++++|.+++.. +..+ ++|+.|++++|++
T Consensus 164 --------~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~---l~~l------~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 164 --------LDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD---LNQN------IQLTFLDCSSNKL 224 (457)
T ss_dssp --------CCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC---CTTC------TTCSEEECCSSCC
T ss_pred --------cccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec---cccC------CCCCEEECcCCcc
Confidence 23667888999999999998876 778888999999999888652 2222 5788999999988
Q ss_pred cccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCC-------CccEEEccCCCCCCCchhhh
Q 047429 243 SGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP-------MLQVLDFSHNNISGMVPTCL 315 (466)
Q Consensus 243 ~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~p~~~ 315 (466)
+ .+| +..+++|++|++++|++ ++..+..+..++ +|+.|++++|.+.+.+| +
T Consensus 225 ~-----------~ip--~~~l~~L~~L~l~~N~l-------~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 225 T-----------EID--VTPLTQLTYFDCSVNPL-------TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp S-----------CCC--CTTCTTCSEEECCSSCC-------SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--C
T ss_pred c-----------ccC--ccccCCCCEEEeeCCcC-------CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--c
Confidence 8 444 66778888888888544 333333333333 44555555555555555 4
Q ss_pred hhhhhhhhcCCCCcee-e-eee--------eccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHH
Q 047429 316 NNLSAMVQNGSSNVIV-E-YRI--------QLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEI 385 (466)
Q Consensus 316 ~~l~~L~~l~~~n~~~-~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i 385 (466)
+.+++|+.|+++++.. + .+. .+...+.+.........+.++ .++.++.|+.|++++|++++ +|. +
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~-l~~-L 357 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD-FSS-V 357 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB-CTT-G
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC-ccc-c
Confidence 5667777777544421 1 110 011111111111111112222 25677888888888888884 331 1
Q ss_pred Hhh--ccCCCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 386 TSL--LIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 386 ~~l--~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
..+ ....+- +...+..|+.+++++|+++|.||..
T Consensus 358 ~~L~l~~n~l~-g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 358 GKIPALNNNFE-AEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGSSGGGTSEE-EEEEEEECCCBCCBTTBEEEECCTT
T ss_pred ccccccCCcEE-ecceeeecCccccccCcEEEEcChh
Confidence 111 000000 0134466788899999999999875
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.4e-31 Score=274.95 Aligned_cols=350 Identities=20% Similarity=0.198 Sum_probs=243.1
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
.+.+|.++++|++|||++|.|++..+ ..|.++++|++|+|++|+++.+ +...+.++++|++|++++|.++.+++
T Consensus 68 ~~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l---~~~~f~~L~~L~~L~Ls~N~l~~l~~-- 141 (635)
T 4g8a_A 68 GSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLEN-- 141 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEE---CGGGGTTCTTCCEEECTTSCCCCSTT--
T ss_pred CHHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCCCC---CHHHhcCCCCCCEEECCCCcCCCCCh--
Confidence 34678999999999999999998877 8899999999999999999888 44555559999999999999998877
Q ss_pred cccccCCCCCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccc----------------
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS---------------- 147 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~---------------- 147 (466)
..+.. +++|++|++++|.++.. .|..+..+ ++|++|++++|.+++..+. .+..+.+++.
T Consensus 142 ~~~~~--L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~i~ 217 (635)
T 4g8a_A 142 FPIGH--LKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQ 217 (635)
T ss_dssp CCCTT--CTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred hhhhc--CcccCeeccccCccccCCCchhhccc-hhhhhhcccCccccccccc-cccchhhhhhhhhhhhcccCcccccC
Confidence 56778 99999999999999764 56778888 9999999999998765444 4433221110
Q ss_pred -----------cc-ccc---------------------------------------------------------------
Q 047429 148 -----------LT-SLN--------------------------------------------------------------- 152 (466)
Q Consensus 148 -----------L~-~~n--------------------------------------------------------------- 152 (466)
+. ..|
T Consensus 218 ~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 297 (635)
T 4g8a_A 218 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDG 297 (635)
T ss_dssp TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEE
T ss_pred cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccc
Confidence 00 000
Q ss_pred -----------------------------------------ccccccccCCCc--------cccCccccccCCCccCEEe
Q 047429 153 -----------------------------------------YITGISKCSLPI--------TLVRPKYAFSNVTSLMDLD 183 (466)
Q Consensus 153 -----------------------------------------~l~~~~~~~l~~--------~~~~~~~~l~~l~~L~~L~ 183 (466)
.+.......++. ...........+++|+.|+
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ 377 (635)
T 4g8a_A 298 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 377 (635)
T ss_dssp CTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEE
T ss_pred hhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccch
Confidence 000000000000 0000111233577899999
Q ss_pred cCCCcCCC---CCcccCCCCCcCEEEeeCCcCCCccchhhhhcc-------------------ccccccccceEecCCcc
Q 047429 184 LSKNQITG---IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS-------------------AGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 184 Ls~n~l~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------------------~~~~~~~L~~L~L~~n~ 241 (466)
+++|.+.. .+..+..+.+|+++++..|......+. +.... ......+++.+++++|.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred hhccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhccccccccccccccccccccccccccc
Confidence 99998764 334444556666666666654422211 11110 00001345555555555
Q ss_pred ccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
+.+ ..|..+..+++++.|++++|.+ ..+..|..+..+++|++|||++|++++..|..|+++++|
T Consensus 457 l~~----------~~~~~~~~~~~L~~L~Ls~N~~------~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 457 TRV----------AFNGIFNGLSSLEVLKMAGNSF------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp CEE----------CCTTTTTTCTTCCEEECTTCEE------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccc----------ccccccccchhhhhhhhhhccc------ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 542 3344567778888888888643 334577889999999999999999999999999999999
Q ss_pred hhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCC-
Q 047429 322 VQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQL- 400 (466)
Q Consensus 322 ~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l- 400 (466)
+.|+++++-. .++++..+..+++|++|||++|++++ ..|.++..+
T Consensus 521 ~~L~Ls~N~l----------------------~~l~~~~~~~l~~L~~L~Ls~N~l~~------------~~~~~l~~l~ 566 (635)
T 4g8a_A 521 QVLNMSHNNF----------------------FSLDTFPYKCLNSLQVLDYSLNHIMT------------SKKQELQHFP 566 (635)
T ss_dssp CEEECTTSCC----------------------CBCCCGGGTTCTTCCEEECTTSCCCB------------CCSSCTTCCC
T ss_pred CEEECCCCcC----------------------CCCChhHHhCCCCCCEEECCCCcCCC------------CCHHHHHhhh
Confidence 9999655432 23445556778999999999999995 445567777
Q ss_pred CCCCeeeccCCcCcc
Q 047429 401 SHLGVVNLSNNNFSG 415 (466)
Q Consensus 401 ~~L~~L~Ls~N~l~~ 415 (466)
++|++|+|++|++.+
T Consensus 567 ~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 567 SSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCEEECTTCCBCC
T ss_pred CcCCEEEeeCCCCcc
Confidence 689999999999974
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2e-30 Score=261.32 Aligned_cols=327 Identities=22% Similarity=0.321 Sum_probs=247.3
Q ss_pred cCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
..+++++.|+++++.+... ..+..+++|++|++++|.++.. +. +.. +++|++|++++|.+....+ +..
T Consensus 43 ~~l~~l~~L~l~~~~i~~l---~~~~~l~~L~~L~Ls~n~l~~~---~~-~~~-l~~L~~L~l~~n~l~~~~~----~~~ 110 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI---TP-LKN-LTKLVDILMNNNQIADITP----LAN 110 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCCC---GG-GTT-CTTCCEEECCSSCCCCCGG----GTT
T ss_pred hHhccccEEecCCCCCccC---cchhhhcCCCEEECCCCccCCc---hh-hhc-cccCCEEECCCCccccChh----hcC
Confidence 3478999999999998864 3488899999999999999987 43 555 9999999999999987654 566
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
+++|++|++++|.+++..+ +..+ ++|++|++++|.+.+ .+ .+..+++|+.|+ . +.+...
T Consensus 111 --l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~-~~~~~~----------- 170 (466)
T 1o6v_A 111 --LTNLTGLTLFNNQITDIDP--LKNL-TNLNRLELSSNTISD-IS--ALSGLTSLQQLSFG-NQVTDL----------- 170 (466)
T ss_dssp --CTTCCEEECCSSCCCCCGG--GTTC-TTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEE-ESCCCC-----------
T ss_pred --CCCCCEEECCCCCCCCChH--HcCC-CCCCEEECCCCccCC-Ch--hhccCCcccEeecC-CcccCc-----------
Confidence 9999999999999987644 7888 999999999999885 33 588899999999 5 444432
Q ss_pred ccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+ +..+ ++|+.|++++|.++
T Consensus 171 --~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l------~~L~~L~l~~n~l~----- 234 (466)
T 1o6v_A 171 --KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGIL------TNLDELSLNGNQLK----- 234 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGC------TTCCEEECCSSCCC-----
T ss_pred --hhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--cccc------CCCCEEECCCCCcc-----
Confidence 35888999999999999998875 47889999999999999987665 2222 67999999999998
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCC
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSN 328 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n 328 (466)
.++ .+..+++|++|++++|.+ .+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 235 ------~~~-~l~~l~~L~~L~l~~n~l-------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 235 ------DIG-TLASLTNLTDLDLANNQI-------SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296 (466)
T ss_dssp ------CCG-GGGGCTTCSEEECCSSCC-------CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred ------cch-hhhcCCCCCEEECCCCcc-------ccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC
Confidence 333 477899999999999665 33322 8899999999999999997655 88999999998655
Q ss_pred ceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeec
Q 047429 329 VIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNL 408 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~L 408 (466)
+.......+...+.+.......+.+.+..+ ...+++|+.|++++|++++ + ..+..+++|+.|++
T Consensus 297 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-------------~-~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 297 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-------------V-SSLANLTNINWLSA 360 (466)
T ss_dssp SCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-------------C-GGGTTCTTCCEEEC
T ss_pred CcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-------------c-hhhccCCCCCEEeC
Confidence 432210001111111111111111122222 4566667777777776662 2 25888999999999
Q ss_pred cCCcCcccCC
Q 047429 409 SNNNFSGKIP 418 (466)
Q Consensus 409 s~N~l~~~ip 418 (466)
++|++++..|
T Consensus 361 ~~n~l~~~~~ 370 (466)
T 1o6v_A 361 GHNQISDLTP 370 (466)
T ss_dssp CSSCCCBCGG
T ss_pred CCCccCccch
Confidence 9999997766
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.4e-30 Score=258.05 Aligned_cols=307 Identities=20% Similarity=0.124 Sum_probs=197.4
Q ss_pred cccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 4 SEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 4 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
.....++.+++|++|++++|.+++.. +..+++|++|++++|.+++. + +.. +++|++|++++|.+++.+
T Consensus 55 ~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~---~--~~~-l~~L~~L~L~~N~l~~l~-- 122 (457)
T 3bz5_A 55 TDMTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL---D--VTP-LTKLTYLNCDTNKLTKLD-- 122 (457)
T ss_dssp CCCTTGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC---C--CTT-CTTCCEEECCSSCCSCCC--
T ss_pred ccChhhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCcee---e--cCC-CCcCCEEECCCCcCCeec--
Confidence 34446889999999999999998752 78899999999999999887 2 444 999999999999988752
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
+.. +++|++|++++|.+++. .+..+ ++|++|++++|...+.. .++.+++|+.|+ +.|.+++.+
T Consensus 123 ---~~~--l~~L~~L~l~~N~l~~l---~l~~l-~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---- 186 (457)
T 3bz5_A 123 ---VSQ--NPLLTYLNCARNTLTEI---DVSHN-TQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---- 186 (457)
T ss_dssp ---CTT--CTTCCEEECTTSCCSCC---CCTTC-TTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC----
T ss_pred ---CCC--CCcCCEEECCCCcccee---ccccC-CcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec----
Confidence 455 88999999999999874 26667 88899999988654444 356788888888 888877641
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
+..+++|+.|++++|.+++++ +..+++|++|++++|++++. | +..+ ++|+.|++++|++
T Consensus 187 ----------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l------~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 ----------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPL------TQLTYFDCSVNPL 245 (457)
T ss_dssp ----------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTC------TTCSEEECCSSCC
T ss_pred ----------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--cccc------CCCCEEEeeCCcC
Confidence 455666777777777766652 56666777777777766652 3 2222 4566666666666
Q ss_pred cccCCCC---------------------cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCC--------CCCC
Q 047429 243 SGSLPGV---------------------TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATP--------KLCS 293 (466)
Q Consensus 243 ~~~~~~~---------------------~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~--------~~~~ 293 (466)
++..+.. ..+.+.+| +..+++|+.|++++|.. .+.+|. .++.
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~-------l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ-------LYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT-------CCEEECTTCCCSCCCCTT
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcc-------cceeccCCCcceEechhh
Confidence 6432110 01112222 23455666666665432 222221 2556
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLS 373 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 373 (466)
+++|++|++++|++++. + ++++++|+.|+++++... . -+.+.........+.+. ..+..+..++++
T Consensus 317 ~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~---~---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ---D---FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC---B---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC---C---ccccccccccCCcEEec-----ceeeecCccccc
Confidence 67777888888887764 2 777777777775443221 1 01111111111111111 244567788899
Q ss_pred CCcCCcCCc
Q 047429 374 DNNLSGKIP 382 (466)
Q Consensus 374 ~N~l~~~ip 382 (466)
+|+++|.||
T Consensus 383 ~N~l~g~ip 391 (457)
T 3bz5_A 383 NNSLTIAVS 391 (457)
T ss_dssp TTBEEEECC
T ss_pred cCcEEEEcC
Confidence 999887554
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6e-30 Score=246.06 Aligned_cols=299 Identities=19% Similarity=0.168 Sum_probs=231.8
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+++.++++++.++.. | ..+ .+.+++|++++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. +
T Consensus 31 c~l~~l~~~~~~l~~l-p-~~~--~~~l~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l 99 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKV-P-KDL--PPDTALLDLQNNKITEIK--DGDFKN-LKNLHTLILINNKISKISP--GAFAP--L 99 (330)
T ss_dssp EETTEEECTTSCCCSC-C-CSC--CTTCCEEECCSSCCCCBC--TTTTTT-CTTCCEEECCSSCCCCBCT--TTTTT--C
T ss_pred CCCeEEEecCCCcccc-C-ccC--CCCCeEEECCCCcCCEeC--hhhhcc-CCCCCEEECCCCcCCeeCH--HHhcC--C
Confidence 3789999999988754 3 222 368999999999998873 223444 9999999999999998766 56777 8
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.++. .|..+. ++|++|++++|.+.+..+. .+.++++|+.|+ +.|.++..+. .+ .
T Consensus 100 ~~L~~L~Ls~n~l~~-l~~~~~---~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~-------~ 165 (330)
T 1xku_A 100 VKLERLYLSKNQLKE-LPEKMP---KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGI--EN-------G 165 (330)
T ss_dssp TTCCEEECCSSCCSB-CCSSCC---TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGB--CT-------T
T ss_pred CCCCEEECCCCcCCc-cChhhc---ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCc--Ch-------h
Confidence 999999999999984 444433 6899999999999866655 889999999999 8888765321 33 5
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.+..+++|++|++++|.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~----- 232 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL------NNLAKLGLSFNSISAVD----- 232 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTC------TTCCEEECCSSCCCEEC-----
T ss_pred hccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCC------CCCCEEECCCCcCceeC-----
Confidence 78889999999999999999887654 789999999999988777776665 67999999999998432
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
+..+..+++|++|++++|++ ..+|..+..+++|++|++++|.+++..+..|......
T Consensus 233 -----~~~~~~l~~L~~L~L~~N~l--------~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~---------- 289 (330)
T 1xku_A 233 -----NGSLANTPHLRELHLNNNKL--------VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN---------- 289 (330)
T ss_dssp -----TTTGGGSTTCCEEECCSSCC--------SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC----------
T ss_pred -----hhhccCCCCCCEEECCCCcC--------ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccc----------
Confidence 23578889999999999766 4788889999999999999999998777666543111
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCC
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N 411 (466)
.....++.|++++|.+... +..|..|..++.++.++|++|
T Consensus 290 ------------------------------~~~~~l~~l~l~~N~~~~~----------~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 ------------------------------TKKASYSGVSLFSNPVQYW----------EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ------------------------------TTSCCCSEEECCSSSSCGG----------GSCGGGGTTCCCGGGEEC---
T ss_pred ------------------------------cccccccceEeecCccccc----------ccCccccccccceeEEEeccc
Confidence 1235568999999998621 133667899999999999998
Q ss_pred c
Q 047429 412 N 412 (466)
Q Consensus 412 ~ 412 (466)
+
T Consensus 330 ~ 330 (330)
T 1xku_A 330 K 330 (330)
T ss_dssp -
T ss_pred C
Confidence 5
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-29 Score=245.01 Aligned_cols=290 Identities=24% Similarity=0.263 Sum_probs=236.6
Q ss_pred ccccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCc
Q 047429 3 ISEAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINY 82 (466)
Q Consensus 3 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 82 (466)
+.+...+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. + .+.. +++|++|++++|.+...++
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~---~-~~~~-l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI---S-ALQN-LTNLRELYLNEDNISDISP 127 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC---G-GGTT-CTTCSEEECTTSCCCCCGG
T ss_pred cccchhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc---h-HHcC-CCcCCEEECcCCcccCchh
Confidence 4455668899999999999999986532 89999999999999999886 3 3445 9999999999999987643
Q ss_pred cccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccC
Q 047429 83 RSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 83 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~ 161 (466)
+.. +++|++|++++|......+ .+..+ ++|++|++++|.+.+.. .+..+++|+.|+ +.|.+.+.
T Consensus 128 ----~~~--l~~L~~L~l~~n~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~---- 192 (347)
T 4fmz_A 128 ----LAN--LTKMYSLNLGANHNLSDLS-PLSNM-TGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDI---- 192 (347)
T ss_dssp ----GTT--CTTCCEEECTTCTTCCCCG-GGTTC-TTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTSCCCCC----
T ss_pred ----hcc--CCceeEEECCCCCCccccc-chhhC-CCCcEEEecCCCcCCch---hhccCCCCCEEEccCCccccc----
Confidence 556 8999999999996654433 47788 99999999999987433 478899999999 99988774
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcc
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
..+..+++|+.|++++|.+..++. +..+++|++|++++|.+++..+ +... ++|++|++++|.
T Consensus 193 ---------~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l------~~L~~L~l~~n~ 254 (347)
T 4fmz_A 193 ---------SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANL------SQLTWLEIGTNQ 254 (347)
T ss_dssp ---------GGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTC------TTCCEEECCSSC
T ss_pred ---------ccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcC------CCCCEEECCCCc
Confidence 347889999999999999998655 7889999999999999986655 3333 689999999999
Q ss_pred ccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 242 LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
++ .+ ..+..+++|++|++++|.+ + .+ +.+..+++|++|++++|.+++..|..|+++++|
T Consensus 255 l~-----------~~-~~~~~l~~L~~L~l~~n~l-------~-~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 255 IS-----------DI-NAVKDLTKLKMLNVGSNQI-------S-DI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp CC-----------CC-GGGTTCTTCCEEECCSSCC-------C-CC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred cC-----------CC-hhHhcCCCcCEEEccCCcc-------C-CC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 98 43 3478899999999999766 2 22 468899999999999999999999999999999
Q ss_pred hhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 322 VQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 322 ~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+.|+++++... ...+ ...++.|++|++++|.++
T Consensus 314 ~~L~L~~n~l~----------------------~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHIT----------------------DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCC----------------------CCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccc----------------------cccC--hhhhhccceeehhhhccc
Confidence 99986554321 1222 567899999999999986
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.2e-30 Score=246.14 Aligned_cols=297 Identities=22% Similarity=0.226 Sum_probs=162.3
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
+++.++++++.++.. | ..+ .++|++|++++|.++.+. +..+.. +++|++|++++|.++...+ ..+.. ++
T Consensus 34 ~l~~l~~~~~~l~~i-p-~~~--~~~l~~L~l~~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-P-KEI--SPDTTLLDLQNNDISELR--KDDFKG-LQHLYALVLVNNKISKIHE--KAFSP--LR 102 (332)
T ss_dssp ETTEEECCSSCCSSC-C-SCC--CTTCCEEECCSSCCCEEC--TTTTTT-CTTCCEEECCSSCCCEECG--GGSTT--CT
T ss_pred cCCEEECCCCCcccc-C-CCC--CCCCeEEECCCCcCCccC--HhHhhC-CCCCcEEECCCCccCccCH--hHhhC--cC
Confidence 456666666665532 2 112 245666666666665542 222333 6666666666666665544 34555 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|++|++++|.++. .|..+. ++|++|++++|.+.+..+. .+..+++|+.|+ +.|.++..+. .+ ..
T Consensus 103 ~L~~L~L~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~-------~~ 168 (332)
T 2ft3_A 103 KLQKLYISKNHLVE-IPPNLP---SSLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGF--EP-------GA 168 (332)
T ss_dssp TCCEEECCSSCCCS-CCSSCC---TTCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGS--CT-------TS
T ss_pred CCCEEECCCCcCCc-cCcccc---ccCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCC--Cc-------cc
Confidence 66666666666653 232222 4566666666666544333 556666666666 5555543111 22 34
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
+..+ +|++|++++|.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..
T Consensus 169 ~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l------~~L~~L~L~~N~l~~~~------ 233 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY------SKLYRLGLGHNQIRMIE------ 233 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTC------TTCSCCBCCSSCCCCCC------
T ss_pred ccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCC------CCCCEEECCCCcCCcCC------
Confidence 4444 56666666666666555433 456666666666665554444433 45666666666665221
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceee
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVE 332 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~ 332 (466)
+..+..+++|++|++++|++ ..+|..+..+++|++|++++|.+++..+..|.....
T Consensus 234 ----~~~~~~l~~L~~L~L~~N~l--------~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------ 289 (332)
T 2ft3_A 234 ----NGSLSFLPTLRELHLDNNKL--------SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------ 289 (332)
T ss_dssp ----TTGGGGCTTCCEEECCSSCC--------CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------
T ss_pred ----hhHhhCCCCCCEEECCCCcC--------eecChhhhcCccCCEEECCCCCCCccChhHcccccc------------
Confidence 12355566666666666444 245555666666666666666666544444433210
Q ss_pred eeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCc
Q 047429 333 YRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN 412 (466)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~ 412 (466)
......++.|++++|.+.. .+..|.+|..+++|+.+++++|+
T Consensus 290 ----------------------------~~~~~~l~~L~l~~N~~~~----------~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 ----------------------------GVKRAYYNGISLFNNPVPY----------WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----------------------------CSSSCCBSEEECCSSSSCG----------GGSCGGGGTTBCCSTTEEC----
T ss_pred ----------------------------ccccccccceEeecCcccc----------cccCcccccccchhhhhhccccc
Confidence 0124556889999998761 11345678889999999998884
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.4e-30 Score=260.73 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=86.1
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCC-------------CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcC
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNK-------------LTSLSLQGLDLREATDWLQVVITGLPSLRELDLS 73 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~-------------L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls 73 (466)
+.++++++|++|++++|.+.+..| ..++.+.+ +++|++++|++++++. . .++|++|+++
T Consensus 28 ~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~------~-~~~L~~L~l~ 99 (454)
T 1jl5_A 28 VEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE------L-PPHLESLVAS 99 (454)
T ss_dssp ------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS------C-CTTCSEEECC
T ss_pred hhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhccCCCEEEecCCccccCCC------C-cCCCCEEEcc
Confidence 456677777777777777766555 55555554 3667777776666521 1 3566666666
Q ss_pred CCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc
Q 047429 74 SSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN 152 (466)
Q Consensus 74 ~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n 152 (466)
+|.+++++. . .++|++|++++|.+++. +. ..++|++|++++|.+++ +| .++++++|++|+ +.|
T Consensus 100 ~n~l~~lp~------~--~~~L~~L~l~~n~l~~l-~~----~~~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 100 CNSLTELPE------L--PQSLKSLLVDNNNLKAL-SD----LPPLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp SSCCSSCCC------C--CTTCCEEECCSSCCSCC-CS----CCTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSS
T ss_pred CCcCCcccc------c--cCCCcEEECCCCccCcc-cC----CCCCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCC
Confidence 666665432 1 34556666666655532 11 11455666666665553 33 355555666666 555
Q ss_pred ccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 153 YITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 153 ~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
.+++. | .. ..+|++|++++|.++++| .+..+++|++|++++|.++
T Consensus 164 ~l~~l-----p-------~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 164 SLKKL-----P-------DL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCSCC-----C-------CC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred cCccc-----C-------CC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence 55442 2 11 124555555555555444 3445555555555555544
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.2e-30 Score=248.78 Aligned_cols=250 Identities=30% Similarity=0.458 Sum_probs=168.6
Q ss_pred CCCCEEEcCCCCCCC--CCccccccccCCCCCccEEEcCC-CCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhc
Q 047429 65 PSLRELDLSSSAPPK--INYRSHSLVNSSSSSLTHLHLSL-CGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN 141 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~--~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~ 141 (466)
.+++.|++++|.+++ ..+ ..+.. +++|++|++++ |.+.+..|..+..+ ++|++|++++|.+.+..|. .+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~--~~l~~--l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~-~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP--SSLAN--LPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPD-FLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC--GGGGG--CTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCG-GGGG
T ss_pred ceEEEEECCCCCccCCcccC--hhHhC--CCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCH-HHhC
Confidence 456666666666654 233 34555 66666666663 66665566666666 6666666666666655665 6666
Q ss_pred CCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCC-CcCEEEeeCCcCCCccch
Q 047429 142 MTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMC-CLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 142 l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~-~L~~L~L~~n~l~~~~~~ 218 (466)
+++|++|+ +.|.+++. +| ..+..+++|++|++++|.+++ +|..+..++ +|++|++++|.+++..|.
T Consensus 124 l~~L~~L~Ls~N~l~~~----~p-------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGT----LP-------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CTTCCEEECCSSEEESC----CC-------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCCCCEEeCCCCccCCc----CC-------hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 66666666 66666554 44 566777778888888887774 777777776 788888888887777776
Q ss_pred hhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCcc
Q 047429 219 LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQ 298 (466)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~ 298 (466)
.+... .|+.|++++|.+++. .|..+..+++|++|++++|.+ ++..+ .+..+++|+
T Consensus 193 ~~~~l-------~L~~L~Ls~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l-------~~~~~-~~~~l~~L~ 247 (313)
T 1ogq_A 193 TFANL-------NLAFVDLSRNMLEGD----------ASVLFGSDKNTQKIHLAKNSL-------AFDLG-KVGLSKNLN 247 (313)
T ss_dssp GGGGC-------CCSEEECCSSEEEEC----------CGGGCCTTSCCSEEECCSSEE-------CCBGG-GCCCCTTCC
T ss_pred HHhCC-------cccEEECcCCcccCc----------CCHHHhcCCCCCEEECCCCce-------eeecC-cccccCCCC
Confidence 66554 278888888877743 345577778888888887555 33333 366777888
Q ss_pred EEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 299 VLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 299 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+|++++|.+++.+|..|..+++| ++|+|++|+++
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L----------------------------------------------~~L~Ls~N~l~ 281 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFL----------------------------------------------HSLNVSFNNLC 281 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTC----------------------------------------------CEEECCSSEEE
T ss_pred EEECcCCcccCcCChHHhcCcCC----------------------------------------------CEEECcCCccc
Confidence 88888888877777777666555 77888888888
Q ss_pred cCCcHHHHhhccCCCcccccCCCCCCeeeccCCc-Ccc
Q 047429 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNN-FSG 415 (466)
Q Consensus 379 ~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~-l~~ 415 (466)
|.+| . ...+++|+.+++++|+ ++|
T Consensus 282 ~~ip------------~-~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 282 GEIP------------Q-GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECC------------C-STTGGGSCGGGTCSSSEEES
T ss_pred ccCC------------C-CccccccChHHhcCCCCccC
Confidence 6444 3 2667788888888887 554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.4e-28 Score=236.46 Aligned_cols=258 Identities=19% Similarity=0.240 Sum_probs=214.4
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+.+++|++++|.+++..+ ..|..+++|++|++++|.++.+. +..+.. +++|++|++++|.++.++.. + .
T Consensus 52 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~l~~~---~----~ 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKIS--PGAFAP-LVKLERLYLSKNQLKELPEK---M----P 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBC--TTTTTT-CTTCCEEECCSSCCSBCCSS---C----C
T ss_pred CCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCeeC--HHHhcC-CCCCCEEECCCCcCCccChh---h----c
Confidence 689999999999998766 78999999999999999998873 334555 99999999999999876541 1 4
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc--CCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG--PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.. ..+. .+.++++|+.|+ +.|.++.. |
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~l-----~------ 187 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITTI-----P------ 187 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCSC-----C------
T ss_pred ccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCccccC-----C------
Confidence 689999999999998888889999 999999999999863 5566 889999999999 99988863 3
Q ss_pred cccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+ .++|++|++++|.+++ .+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.++
T Consensus 188 -~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~----- 253 (330)
T 1xku_A 188 -QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT------PHLRELHLNNNKLV----- 253 (330)
T ss_dssp -SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS------TTCCEEECCSSCCS-----
T ss_pred -ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC------CCCCEEECCCCcCc-----
Confidence 222 2789999999999998 46789999999999999999998777666555 68999999999998
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCC------CCCCccEEEccCCCCCC--Cchhhhhhhhh
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLC------SSPMLQVLDFSHNNISG--MVPTCLNNLSA 320 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~------~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~ 320 (466)
.+|..+..+++|++|++++|.+ ++..+..|+ ..+.|+.|++++|.+.. ..|..|..+..
T Consensus 254 ------~lp~~l~~l~~L~~L~l~~N~i-------~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 254 ------KVPGGLADHKYIQVVYLHNNNI-------SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp ------SCCTTTTTCSSCCEEECCSSCC-------CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred ------cCChhhccCCCcCEEECCCCcC-------CccChhhcCCcccccccccccceEeecCcccccccCccccccccc
Confidence 7888899999999999999665 443344443 24789999999999863 55666666655
Q ss_pred h
Q 047429 321 M 321 (466)
Q Consensus 321 L 321 (466)
+
T Consensus 321 l 321 (330)
T 1xku_A 321 R 321 (330)
T ss_dssp G
T ss_pred e
Confidence 5
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=7.6e-30 Score=243.23 Aligned_cols=243 Identities=28% Similarity=0.451 Sum_probs=206.6
Q ss_pred CCccEEEcCCCCCCc--hhhhhhhcccCCCcEEEccC-CccccCCChhhhhcCCcccccc-cccccccccccCCCccccC
Q 047429 93 SSLTHLHLSLCGLSN--SAYHCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVR 168 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~ 168 (466)
.++++|++++|.+++ ..|..+..+ ++|++|++++ |.+.+.+|. .++++++|++|+ +.|.+++. +|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~----~p----- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGA----IP----- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEE----CC-----
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCc----CC-----
Confidence 589999999999998 788999999 9999999995 999989998 899999999999 99999866 66
Q ss_pred ccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+++..|..+..+ ++.|+.|++++|++++.
T Consensus 119 --~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~~L~~L~L~~N~l~~~-- 189 (313)
T 1ogq_A 119 --DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-----SKLFTSMTISRNRLTGK-- 189 (313)
T ss_dssp --GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-----CTTCCEEECCSSEEEEE--
T ss_pred --HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh-----hhcCcEEECcCCeeecc--
Confidence 778999999999999999996 88899999999999999999998888776655 12799999999999854
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCC
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSS 327 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 327 (466)
+|..+..++ |++|++++|.+ ++..|..+..+++|++|++++|.+++.+|. +..
T Consensus 190 --------~~~~~~~l~-L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~---------- 242 (313)
T 1ogq_A 190 --------IPPTFANLN-LAFVDLSRNML-------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL---------- 242 (313)
T ss_dssp --------CCGGGGGCC-CSEEECCSSEE-------EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC----------
T ss_pred --------CChHHhCCc-ccEEECcCCcc-------cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc----------
Confidence 445677776 99999999554 567888899999999999999999866554 433
Q ss_pred CceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeee
Q 047429 328 NVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVN 407 (466)
Q Consensus 328 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~ 407 (466)
+++|++|+|++|++++ .+|.++..+++|++|+
T Consensus 243 ------------------------------------l~~L~~L~Ls~N~l~~------------~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 243 ------------------------------------SKNLNGLDLRNNRIYG------------TLPQGLTQLKFLHSLN 274 (313)
T ss_dssp ------------------------------------CTTCCEEECCSSCCEE------------CCCGGGGGCTTCCEEE
T ss_pred ------------------------------------cCCCCEEECcCCcccC------------cCChHHhcCcCCCEEE
Confidence 3455999999999996 5566788999999999
Q ss_pred ccCCcCcccCCCCCCcccccccc
Q 047429 408 LSNNNFSGKIPSSIPLQTFEASA 430 (466)
Q Consensus 408 Ls~N~l~~~ip~~~~~~~~~~~~ 430 (466)
+++|+++|.+|+...+..++...
T Consensus 275 Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 275 VSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp CCSSEEEEECCCSTTGGGSCGGG
T ss_pred CcCCcccccCCCCccccccChHH
Confidence 99999999999986555555443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-28 Score=236.40 Aligned_cols=258 Identities=19% Similarity=0.246 Sum_probs=214.7
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
+++++|++++|.+++..+ ..|.++++|++|++++|.++.+. +..+.. +++|++|++++|.++.++.. . .
T Consensus 54 ~~l~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~l~~~--~-----~ 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNNKISKIH--EKAFSP-LRKLQKLYISKNHLVEIPPN--L-----P 122 (332)
T ss_dssp TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC--GGGSTT-CTTCCEEECCSSCCCSCCSS--C-----C
T ss_pred CCCeEEECCCCcCCccCH-hHhhCCCCCcEEECCCCccCccC--HhHhhC-cCCCCEEECCCCcCCccCcc--c-----c
Confidence 689999999999998776 78999999999999999998873 444545 99999999999999976652 1 3
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcccc--CCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQG--PTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
++|++|++++|.++...+..+..+ ++|++|++++|.+.. ..+. .+..+ +|+.|+ +.|.+++. |
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~l-----~------ 188 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTGI-----P------ 188 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSSC-----C------
T ss_pred ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCcc-----C------
Confidence 689999999999998777788888 999999999999963 5555 77777 899999 99998874 3
Q ss_pred cccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCC
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPG 248 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 248 (466)
..+ .++|++|++++|.+++++ ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|+++
T Consensus 189 -~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~----- 254 (332)
T 2ft3_A 189 -KDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL------PTLRELHLDNNKLS----- 254 (332)
T ss_dssp -SSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC------TTCCEEECCSSCCC-----
T ss_pred -ccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC------CCCCEEECCCCcCe-----
Confidence 222 278999999999999954 689999999999999999998887776665 68999999999998
Q ss_pred CcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCC------CCCccEEEccCCCCC--CCchhhhhhhhh
Q 047429 249 VTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS------SPMLQVLDFSHNNIS--GMVPTCLNNLSA 320 (466)
Q Consensus 249 ~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~ 320 (466)
.+|..+..+++|++|++++|.+ ++..+..++. .+.|+.|++++|.+. +..|..|..++.
T Consensus 255 ------~lp~~l~~l~~L~~L~l~~N~l-------~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 255 ------RVPAGLPDLKLLQVVYLHTNNI-------TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp ------BCCTTGGGCTTCCEEECCSSCC-------CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred ------ecChhhhcCccCCEEECCCCCC-------CccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence 7888899999999999999655 4444444443 467999999999987 567777777766
Q ss_pred hh
Q 047429 321 MV 322 (466)
Q Consensus 321 L~ 322 (466)
|+
T Consensus 322 L~ 323 (332)
T 2ft3_A 322 RL 323 (332)
T ss_dssp ST
T ss_pred hh
Confidence 63
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.6e-28 Score=245.73 Aligned_cols=222 Identities=20% Similarity=0.126 Sum_probs=143.3
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCC-------------CCCEEE
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLP-------------SLRELD 71 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-------------~L~~L~ 71 (466)
.|+.+ +.+.|++|++++|.+ +..| ..++++++|++|++++|.+.+.. |..+.. ++ ++++|+
T Consensus 4 ~p~~~-~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~--p~~~~~-l~~L~~l~l~~c~~~~l~~L~ 77 (454)
T 1jl5_A 4 NPRNV-SNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNA--PPGNGE-QREMAVSRLRDCLDRQAHELE 77 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTS--CTTSCC-CHHHHHHHHHHHHHHTCSEEE
T ss_pred ccccc-ccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccC--Cccccc-chhcchhhhhhhhccCCCEEE
Confidence 34445 458999999999999 5667 78999999999999999886431 333333 44 469999
Q ss_pred cCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-c
Q 047429 72 LSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-S 150 (466)
Q Consensus 72 Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~ 150 (466)
+++|.+++++.. .++|++|++++|.+++ .|.. . ++|++|++++|.+.+ ++. . .++|++|+ +
T Consensus 78 l~~~~l~~lp~~--------~~~L~~L~l~~n~l~~-lp~~---~-~~L~~L~l~~n~l~~-l~~-~---~~~L~~L~L~ 139 (454)
T 1jl5_A 78 LNNLGLSSLPEL--------PPHLESLVASCNSLTE-LPEL---P-QSLKSLLVDNNNLKA-LSD-L---PPLLEYLGVS 139 (454)
T ss_dssp CTTSCCSCCCSC--------CTTCSEEECCSSCCSS-CCCC---C-TTCCEEECCSSCCSC-CCS-C---CTTCCEEECC
T ss_pred ecCCccccCCCC--------cCCCCEEEccCCcCCc-cccc---c-CCCcEEECCCCccCc-ccC-C---CCCCCEEECc
Confidence 999999886541 4689999999999997 4543 3 789999999999984 332 1 26899999 9
Q ss_pred ccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcccccccc
Q 047429 151 LNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKK 230 (466)
Q Consensus 151 ~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 230 (466)
.|.+++ +| .+..+++|++|++++|.++++|..+ ++|++|++++|.+++ .|. +..+ +
T Consensus 140 ~n~l~~-----lp--------~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~-~~~l------~ 195 (454)
T 1jl5_A 140 NNQLEK-----LP--------ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPE-LQNL------P 195 (454)
T ss_dssp SSCCSS-----CC--------CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCC-CTTC------T
T ss_pred CCCCCC-----Cc--------ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Ccc-ccCC------C
Confidence 998876 44 5889999999999999999988654 589999999999987 443 4333 4
Q ss_pred ccceEecCCccccccCCC---C-------cccccccCcccCCCCCCcEEeCCCCee
Q 047429 231 SLQSFMLQNNMLSGSLPG---V-------TELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~---~-------~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
+|+.|++++|.+++.... . ..+. .+|. +..+++|++|++++|++
T Consensus 196 ~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 196 FLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence 677777777777642111 0 1222 5664 77888899999988765
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.6e-30 Score=261.64 Aligned_cols=351 Identities=18% Similarity=0.156 Sum_probs=204.9
Q ss_pred ccCCcCCcEEeCCCccccccc---hHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCC----CCCEEEcCCCCCCCCC
Q 047429 9 HISLEDLQSINIGLNAIRVRK---FDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLP----SLRELDLSSSAPPKIN 81 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~----~L~~L~Ls~n~l~~~~ 81 (466)
+..+++|++|++++|.+++.. .+..+..+++|++|++++|.++... +..+...++ +|++|++++|.++...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG--VHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH--HHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH--HHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence 456677777777777766432 1145566677777777777765532 333433344 5777777777766432
Q ss_pred --ccccccccCCCCCccEEEcCCCCCCchhhhhhhc-----ccCCCcEEEccCCccccCC----ChhhhhcCCcccccc-
Q 047429 82 --YRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH-----ISKSLVYLDLSNNQLQGPT----PDYAFRNMTSLASLT- 149 (466)
Q Consensus 82 --~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~~L~~L~Ls~n~l~~~~----~~~~~~~l~~L~~L~- 149 (466)
.....+.. +++|++|++++|.++...+..+.. . ++|++|++++|.+++.. +. .+..+++|++|+
T Consensus 102 ~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L 177 (461)
T 1z7x_W 102 CGVLSSTLRT--LPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-CRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTV 177 (461)
T ss_dssp HHHHHHHTTS--CTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEEC
T ss_pred HHHHHHHHcc--CCceeEEECCCCcCchHHHHHHHHHHhcCC-CcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEEC
Confidence 00134445 677777777777776544443332 2 45777777777766533 23 445567777777
Q ss_pred cccccccccccCCCccccCcccccc-CCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhc
Q 047429 150 SLNYITGISKCSLPITLVRPKYAFS-NVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNF 223 (466)
Q Consensus 150 ~~n~l~~~~~~~l~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 223 (466)
+.|.++..+...+. ..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+++.....+...
T Consensus 178 ~~n~i~~~~~~~l~-------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 178 SNNDINEAGVRVLC-------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp CSSBCHHHHHHHHH-------HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHH-------HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 66666553221111 1111 24577777777777765 34556667777777777777654332222211
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCC-----CCCCCcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKL-----CSSPMLQ 298 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~-----~~l~~L~ 298 (466)
+... .++|++|++++|.+++.... .++..+..+++|++|++++|.+ ++..+..+ ...++|+
T Consensus 251 ~~~~-~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i-------~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 251 LLHP-SSRLRTLWIWECGITAKGCG------DLCRVLRAKESLKELSLAGNEL-------GDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp HTST-TCCCCEEECTTSCCCHHHHH------HHHHHHHHCTTCCEEECTTCCC-------HHHHHHHHHHHHTSTTCCCC
T ss_pred HhcC-CCCceEEECcCCCCCHHHHH------HHHHHHhhCCCcceEECCCCCC-------chHHHHHHHHHhccCCccce
Confidence 1111 14677777777777632100 1455566677888888887554 22211111 1235788
Q ss_pred EEEccCCCCCCC----chhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhh-----ccCCCcE
Q 047429 299 VLDFSHNNISGM----VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI-----TLGLPKS 369 (466)
Q Consensus 299 ~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~~ 369 (466)
+|++++|.+++. ++..+..+++|+.|+++++... ......+. ..+.|++
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~----------------------~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE----------------------DAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH----------------------HHHHHHHHHHHTSTTCCCCE
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc----------------------cccHHHHHHHHcCCCCceEE
Confidence 888888888765 4556666677777775443211 11111111 2568999
Q ss_pred EECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 370 IDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 370 L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
|++++|++++.--. .+|.++..+++|++|++++|++++.
T Consensus 375 L~L~~n~i~~~~~~--------~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 375 LWLADCDVSDSSCS--------SLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EECTTSCCCHHHHH--------HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EECCCCCCChhhHH--------HHHHHHHhCCCccEEECCCCCCCHH
Confidence 99999988741111 3455678899999999999999753
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-28 Score=234.98 Aligned_cols=276 Identities=21% Similarity=0.239 Sum_probs=146.2
Q ss_pred CCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcc
Q 047429 37 HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHI 116 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 116 (466)
++.....+.+++.++.+ |..+ .++|++|++++|.++..++ ..+.. +++|++|++++|.+++..+..|..+
T Consensus 30 C~~~~~c~~~~~~l~~i---P~~~---~~~L~~L~l~~n~i~~~~~--~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI---PSGL---TEAVKSLDLSNNRITYISN--SDLQR--CVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp ECTTSEEECCSTTCSSC---CTTC---CTTCCEEECTTSCCCEECT--TTTTT--CTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCeEeeCCCCCcccc---cccc---cccCcEEECCCCcCcccCH--HHhcc--CCCCCEEECCCCccCccCHhhcCCC
Confidence 33444455555555554 2222 2355555555555554443 33444 5555566665555555555555555
Q ss_pred cCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCC-cCCCC-C
Q 047429 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITGI-P 193 (466)
Q Consensus 117 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~ 193 (466)
++|++|++++|.+++ .+...++++++|++|+ +.|.++.. +. ...+..+++|++|++++| .++.+ +
T Consensus 100 -~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l-----~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 100 -GSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTL-----GE-----TSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp -TTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSS-----CS-----SCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred -CCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCccc-----Cc-----hhhhccCCCCcEEECCCCccccccCH
Confidence 555666666555553 2221355555555555 55544432 10 013455556666666655 24442 3
Q ss_pred cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc-cCCCCCCcEEeCC
Q 047429 194 KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ-FCRPSSLVELDLE 272 (466)
Q Consensus 194 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~-~~~l~~L~~L~L~ 272 (466)
..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|.. +..+++|++|+++
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l------~~L~~L~l~~n~l~-----------~~~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSI------QNVSHLILHMKQHI-----------LLLEIFVDVTSSVECLELR 230 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTC------SEEEEEEEECSCST-----------THHHHHHHHTTTEEEEEEE
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhcc------ccCCeecCCCCccc-----------cchhhhhhhcccccEEECC
Confidence 455555666666666666555545444433 44566666666554 33322 2235556666665
Q ss_pred CCeeeeecccccccCCCC---CCCCCCccEEEccCCCCCCC----chhhhhhhhhhhhcCCCCceeeeeeeccCCCCccc
Q 047429 273 SNQLWLRFNHINGSATPK---LCSSPMLQVLDFSHNNISGM----VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDY 345 (466)
Q Consensus 273 ~n~l~l~~n~~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~ 345 (466)
+|.+ ++..+.. ....+.++.++++++.+++. +|..+.
T Consensus 231 ~n~l-------~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~----------------------------- 274 (353)
T 2z80_A 231 DTDL-------DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN----------------------------- 274 (353)
T ss_dssp SCBC-------TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH-----------------------------
T ss_pred CCcc-------ccccccccccccccchhhccccccccccCcchhhhHHHHh-----------------------------
Confidence 5433 2221111 12345566777777766542 222233
Q ss_pred ccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCccc-ccCCCCCCeeeccCCcCcccC
Q 047429 346 QDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRS-FSQLSHLGVVNLSNNNFSGKI 417 (466)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~-l~~l~~L~~L~Ls~N~l~~~i 417 (466)
.+++|++|++++|+++ .+|.. |..+++|++|++++|++++..
T Consensus 275 -----------------~l~~L~~L~Ls~N~l~-------------~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 275 -----------------QISGLLELEFSRNQLK-------------SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -----------------TCTTCCEEECCSSCCC-------------CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred -----------------cccCCCEEECCCCCCC-------------ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 3455588889998888 44444 478888999999999887543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.6e-29 Score=252.87 Aligned_cols=346 Identities=19% Similarity=0.183 Sum_probs=247.3
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCcccccccc
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVN 89 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 89 (466)
+++|++||+++|.++.......+..+++|++|++++|.++... .++..+.. +++|++|++++|.+++... ..+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~--~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALAELNLRSNELGDVGV--HCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHT-CTTCCEEECTTCCCHHHHH--HHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHh-CCCcCEEeCCCCcCChHHH--HHHHH
Confidence 4678999999999987766455889999999999999987541 22344455 8999999999999875433 12221
Q ss_pred CCCC----CccEEEcCCCCCCc----hhhhhhhcccCCCcEEEccCCccccCCChhhhhc-----CCcccccc-cccccc
Q 047429 90 SSSS----SLTHLHLSLCGLSN----SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN-----MTSLASLT-SLNYIT 155 (466)
Q Consensus 90 ~~l~----~L~~L~Ls~n~l~~----~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~-----l~~L~~L~-~~n~l~ 155 (466)
.+. +|++|++++|.++. ..+..+..+ ++|++|++++|.+.+..+. .+.. .++|++|+ +.|.++
T Consensus 79 -~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 79 -GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp -TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred -HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC-CceeEEECCCCcCchHHHH-HHHHHHhcCCCcceEEECCCCCCC
Confidence 033 79999999999985 457788888 9999999999998754444 3332 45799999 999888
Q ss_pred cccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccC-----CCCCcCEEEeeCCcCCCcc----chhhhhccc
Q 047429 156 GISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFG-----DMCCLKTLKIHDNILTAKL----PELFLNFSA 225 (466)
Q Consensus 156 ~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~-----~l~~L~~L~L~~n~l~~~~----~~~~~~~~~ 225 (466)
......++ ..+..+++|++|++++|.++. .+..+. ..++|++|++++|.+++.. +..+...
T Consensus 156 ~~~~~~l~-------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-- 226 (461)
T 1z7x_W 156 AASCEPLA-------SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-- 226 (461)
T ss_dssp GGGHHHHH-------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC--
T ss_pred HHHHHHHH-------HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC--
Confidence 75433344 567788999999999999876 222222 3669999999999998753 3333333
Q ss_pred cccccccceEecCCccccccCCCCccccccc-CcccCCCCCCcEEeCCCCeeeeeccccccc----CCCCCCCCCCccEE
Q 047429 226 GCAKKSLQSFMLQNNMLSGSLPGVTELDGTF-PKQFCRPSSLVELDLESNQLWLRFNHINGS----ATPKLCSSPMLQVL 300 (466)
Q Consensus 226 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l-p~~~~~l~~L~~L~L~~n~l~l~~n~~~~~----~~~~~~~l~~L~~L 300 (466)
++|++|++++|.+++.... .+ +..+..+++|++|++++|.+ ++. ++..+..+++|++|
T Consensus 227 ----~~L~~L~Ls~n~l~~~~~~------~l~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 227 ----ASLRELALGSNKLGDVGMA------ELCPGLLHPSSRLRTLWIWECGI-------TAKGCGDLCRVLRAKESLKEL 289 (461)
T ss_dssp ----TTCCEEECCSSBCHHHHHH------HHHHHHTSTTCCCCEEECTTSCC-------CHHHHHHHHHHHHHCTTCCEE
T ss_pred ----CCccEEeccCCcCChHHHH------HHHHHHhcCCCCceEEECcCCCC-------CHHHHHHHHHHHhhCCCcceE
Confidence 6799999999998742110 12 22244688999999999765 322 46667778999999
Q ss_pred EccCCCCCCCchhhhhhh-----hhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCC
Q 047429 301 DFSHNNISGMVPTCLNNL-----SAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDN 375 (466)
Q Consensus 301 ~Ls~N~l~~~~p~~~~~l-----~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 375 (466)
++++|.+++..+..+... ++|+.|+++.+..... ........+..+++|++|++++|
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~------------------~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------------------CCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG------------------GHHHHHHHHHHCSSCCEEECCSS
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH------------------HHHHHHHHHhhCCCccEEEccCC
Confidence 999999987666666654 5787777554422100 00001223456799999999999
Q ss_pred cCCcCCcHHHHhhccCCCcccccC-CCCCCeeeccCCcCcc
Q 047429 376 NLSGKIPEEITSLLIGKIPRSFSQ-LSHLGVVNLSNNNFSG 415 (466)
Q Consensus 376 ~l~~~ip~~i~~l~~~~ip~~l~~-l~~L~~L~Ls~N~l~~ 415 (466)
++++..+..+.. .+.. .++|++|++++|.+++
T Consensus 352 ~i~~~~~~~l~~--------~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 352 RLEDAGVRELCQ--------GLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp BCHHHHHHHHHH--------HHTSTTCCCCEEECTTSCCCH
T ss_pred ccccccHHHHHH--------HHcCCCCceEEEECCCCCCCh
Confidence 998544443322 2332 6899999999999985
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-26 Score=220.48 Aligned_cols=248 Identities=23% Similarity=0.286 Sum_probs=164.9
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCch--hhhhhhcccC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNS--AYHCLSHISK 118 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~ 118 (466)
+.++.++++++.+ |..+ .++|++|++++|.++.++. ..+.. +++|++|++++|.++.. .+..+..+ +
T Consensus 10 ~~l~c~~~~l~~i---p~~~---~~~l~~L~L~~n~l~~i~~--~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~-~ 78 (306)
T 2z66_A 10 TEIRCNSKGLTSV---PTGI---PSSATRLELESNKLQSLPH--GVFDK--LTQLTKLSLSSNGLSFKGCCSQSDFGT-T 78 (306)
T ss_dssp TEEECCSSCCSSC---CSCC---CTTCCEEECCSSCCCCCCT--TTTTT--CTTCSEEECCSSCCCEEEEEEHHHHSC-S
T ss_pred CEEEcCCCCcccC---CCCC---CCCCCEEECCCCccCccCH--hHhhc--cccCCEEECCCCccCcccCcccccccc-c
Confidence 4566777766666 2221 3467777777777766554 34555 67777777777776633 24445555 6
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC--ccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP--KSF 196 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~l 196 (466)
+|++|++++|.+.. + + ..+..+++|++|++++|.++.++ ..+
T Consensus 79 ~L~~L~Ls~n~i~~-l----------------------------~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 122 (306)
T 2z66_A 79 SLKYLDLSFNGVIT-M----------------------------S-------SNFLGLEQLEHLDFQHSNLKQMSEFSVF 122 (306)
T ss_dssp CCCEEECCSCSEEE-E----------------------------E-------EEEETCTTCCEEECTTSEEESSTTTTTT
T ss_pred ccCEEECCCCcccc-C----------------------------h-------hhcCCCCCCCEEECCCCcccccccchhh
Confidence 77777777776652 2 2 34556677777777777777754 367
Q ss_pred CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee
Q 047429 197 GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+++. .+|..+..+++|++|++++|
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~~---------~~~~~~~~l~~L~~L~Ls~n-- 185 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGL------SSLEVLKMAGNSFQEN---------FLPDIFTELRNLTFLDLSQC-- 185 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTC------TTCCEEECTTCEEGGG---------EECSCCTTCTTCCEEECTTS--
T ss_pred hhccCCCEEECCCCcCCccchhhcccC------cCCCEEECCCCccccc---------cchhHHhhCcCCCEEECCCC--
Confidence 777778888888887776666655444 5688888888877631 24566777888888888874
Q ss_pred eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecc
Q 047429 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPI 356 (466)
Q Consensus 277 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (466)
.+++..|..+..+++|++|++++|.+++..+..|..+++|
T Consensus 186 -----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------------------- 225 (306)
T 2z66_A 186 -----QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL----------------------------------- 225 (306)
T ss_dssp -----CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC-----------------------------------
T ss_pred -----CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC-----------------------------------
Confidence 4455556777788888888888888876666555554444
Q ss_pred cchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCC-CCCeeeccCCcCcc
Q 047429 357 DSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLS-HLGVVNLSNNNFSG 415 (466)
Q Consensus 357 ~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~-~L~~L~Ls~N~l~~ 415 (466)
+.|++++|++++ ..|..+..++ +|++|++++|.+++
T Consensus 226 -----------~~L~L~~N~l~~------------~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 226 -----------QVLDYSLNHIMT------------SKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp -----------CEEECTTSCCCB------------CSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred -----------CEeECCCCCCcc------------cCHHHHHhhhccCCEEEccCCCeec
Confidence 778888888774 3344566664 78888888888764
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-26 Score=221.94 Aligned_cols=225 Identities=17% Similarity=0.210 Sum_probs=161.6
Q ss_pred CCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcc
Q 047429 37 HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHI 116 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 116 (466)
..++++|+|++|.++.+ +..+.. +++|++|++++|.++.++ ..+.. +++|++|++++|.++ .+|..+..+
T Consensus 80 ~~~l~~L~L~~n~l~~l---p~~l~~-l~~L~~L~L~~n~l~~lp---~~~~~--l~~L~~L~Ls~n~l~-~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF---PDQAFR-LSHLQHMTIDAAGLMELP---DTMQQ--FAGLETLTLARNPLR-ALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSC---CSCGGG-GTTCSEEEEESSCCCCCC---SCGGG--GTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred ccceeEEEccCCCchhc---Chhhhh-CCCCCEEECCCCCccchh---HHHhc--cCCCCEEECCCCccc-cCcHHHhcC
Confidence 35566666666666544 334444 566666666666655332 23444 556666666666655 345555555
Q ss_pred cCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc
Q 047429 117 SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF 196 (466)
Q Consensus 117 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l 196 (466)
++|++|++++|.+.+.+|. .+.... ++ ..+..+++|++|++++|.++.+|..+
T Consensus 150 -~~L~~L~L~~n~~~~~~p~-~~~~~~------------------~~-------~~~~~l~~L~~L~L~~n~l~~lp~~l 202 (328)
T 4fcg_A 150 -NRLRELSIRACPELTELPE-PLASTD------------------AS-------GEHQGLVNLQSLRLEWTGIRSLPASI 202 (328)
T ss_dssp -TTCCEEEEEEETTCCCCCS-CSEEEC-------------------C-------CCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred -cCCCEEECCCCCCccccCh-hHhhcc------------------ch-------hhhccCCCCCEEECcCCCcCcchHhh
Confidence 5666666666555544444 222100 11 34667899999999999999999999
Q ss_pred CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee
Q 047429 197 GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
..+++|++|++++|.+++..+ .+..+ ++|++|++++|.+.+ .+|..+..+++|++|++++
T Consensus 203 ~~l~~L~~L~L~~N~l~~l~~-~l~~l------~~L~~L~Ls~n~~~~----------~~p~~~~~l~~L~~L~L~~--- 262 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSALGP-AIHHL------PKLEELDLRGCTALR----------NYPPIFGGRAPLKRLILKD--- 262 (328)
T ss_dssp GGCTTCCEEEEESSCCCCCCG-GGGGC------TTCCEEECTTCTTCC----------BCCCCTTCCCCCCEEECTT---
T ss_pred cCCCCCCEEEccCCCCCcCch-hhccC------CCCCEEECcCCcchh----------hhHHHhcCCCCCCEEECCC---
Confidence 999999999999999996444 45544 689999999998874 4566789999999999999
Q ss_pred eeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 277 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
|.+.+.+|..+..+++|++|+|++|.+.+.+|..++++++|+
T Consensus 263 ----n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 263 ----CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ----CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ----CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 455688999999999999999999999999999999988883
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4e-27 Score=228.45 Aligned_cols=272 Identities=19% Similarity=0.171 Sum_probs=203.5
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
.++.....+++++.++.. | ..+ .++|++|++++|.++.+ +...+..+++|++|++++|.+++..+ ..+..
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P-~~~--~~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~- 98 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-P-SGL--TEAVKSLDLSNNRITYI---SNSDLQRCVNLQALVLTSNGINTIEE--DSFSS- 98 (353)
T ss_dssp EECTTSEEECCSTTCSSC-C-TTC--CTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECTTSCCCEECT--TTTTT-
T ss_pred CCCCCeEeeCCCCCcccc-c-ccc--cccCcEEECCCCcCccc---CHHHhccCCCCCEEECCCCccCccCH--hhcCC-
Confidence 455566789999988854 3 222 35899999999999887 33333449999999999999988766 56777
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccc-ccccccccCCCccccC
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLN-YITGISKCSLPITLVR 168 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n-~l~~~~~~~l~~~~~~ 168 (466)
+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+...+..+++|+.|+ +.| .++.. .+
T Consensus 99 -l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~----~~----- 167 (353)
T 2z80_A 99 -LGSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI----QR----- 167 (353)
T ss_dssp -CTTCCEEECCSSCCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE----CT-----
T ss_pred -CCCCCEEECCCCcCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc----CH-----
Confidence 8999999999999997777778888 99999999999998544412688899999999 777 45554 33
Q ss_pred ccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
..+..+++|++|++++|.+++ .|..+..+++|++|++++|.++......+... ++|+.|++++|.+++..+
T Consensus 168 --~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 168 --KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT------SSVECLELRDTDLDTFHF 239 (353)
T ss_dssp --TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT------TTEEEEEEESCBCTTCCC
T ss_pred --HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc------ccccEEECCCCccccccc
Confidence 578889999999999999998 57889999999999999999875443333233 579999999999985433
Q ss_pred CCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 248 GVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 248 ~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
. .++ .......++.++++++.+ +++.+. .+|..+..+++|++|++++|.+++..+..|.++++|
T Consensus 240 ~------~l~-~~~~~~~l~~l~L~~~~l--~~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 240 S------ELS-TGETNSLIKKFTFRNVKI--TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp C-------------CCCCCCEEEEESCBC--CHHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred c------ccc-cccccchhhccccccccc--cCcchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence 2 111 133456788888888654 223332 467778899999999999999985444445665555
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.4e-26 Score=233.87 Aligned_cols=262 Identities=26% Similarity=0.291 Sum_probs=197.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.+++.|++++|.++.. | ..+. ++|++|++++|.++.++ . . +++|++|+|++|.++.++. . +
T Consensus 40 ~~l~~L~ls~n~L~~l-p-~~l~--~~L~~L~L~~N~l~~lp---~---~-l~~L~~L~Ls~N~l~~lp~------~--l 100 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLTSLP---A---L-PPELRTLEVSGNQLTSLPV------L--P 100 (622)
T ss_dssp HCCCEEECCSSCCSCC-C-SCCC--TTCSEEEECSCCCSCCC---C---C-CTTCCEEEECSCCCSCCCC------C--C
T ss_pred CCCcEEEecCCCcCcc-C-hhhC--CCCcEEEecCCCCCCCC---C---c-CCCCCEEEcCCCcCCcCCC------C--C
Confidence 3689999999999844 4 3333 78999999999998773 2 3 8899999999999887543 3 7
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.+++.. . .+ ++|+.|++++|.+++ +|. . +++|+.|+ +.|.+++. | .
T Consensus 101 ~~L~~L~Ls~N~l~~l~-~---~l-~~L~~L~L~~N~l~~-lp~-~---l~~L~~L~Ls~N~l~~l-----~-------~ 158 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLP-A---LP-SGLCKLWIFGNQLTS-LPV-L---PPGLQELSVSDNQLASL-----P-------A 158 (622)
T ss_dssp TTCCEEEECSCCCCCCC-C---CC-TTCCEEECCSSCCSC-CCC-C---CTTCCEEECCSSCCSCC-----C-------C
T ss_pred CCCCEEECcCCcCCCCC-C---CC-CCcCEEECCCCCCCc-CCC-C---CCCCCEEECcCCcCCCc-----C-------C
Confidence 89999999999998643 3 34 889999999999884 554 2 48899999 88888763 3 1
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
..++|+.|++++|.++.+| ..+++|+.|++++|.+++..+ . +++|+.|++++|.++
T Consensus 159 ---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~-~---------~~~L~~L~L~~N~l~-------- 214 (622)
T 3g06_A 159 ---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPT-L---------PSELYKLWAYNNRLT-------- 214 (622)
T ss_dssp ---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C---------CTTCCEEECCSSCCS--------
T ss_pred ---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCC-c---------cchhhEEECcCCccc--------
Confidence 2467899999999999887 456889999999999885332 1 157999999999988
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.+|.. +++|+.|++++|.+ + .+| ..+++|++|++++|.+++ +|. .++
T Consensus 215 ---~l~~~---~~~L~~L~Ls~N~L-------~-~lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~------------ 261 (622)
T 3g06_A 215 ---SLPAL---PSGLKELIVSGNRL-------T-SLP---VLPSELKELMVSGNRLTS-LPM---LPS------------ 261 (622)
T ss_dssp ---SCCCC---CTTCCEEECCSSCC-------S-CCC---CCCTTCCEEECCSSCCSC-CCC---CCT------------
T ss_pred ---ccCCC---CCCCCEEEccCCcc-------C-cCC---CCCCcCcEEECCCCCCCc-CCc---ccc------------
Confidence 55543 47899999998655 3 344 456889999999999884 443 223
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCC
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N 411 (466)
+|+.|+|++|+++ .+|.++.++++|+.|+|++|
T Consensus 262 ----------------------------------~L~~L~Ls~N~L~-------------~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 262 ----------------------------------GLLSLSVYRNQLT-------------RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp ----------------------------------TCCEEECCSSCCC-------------SCCGGGGGSCTTCEEECCSC
T ss_pred ----------------------------------cCcEEeCCCCCCC-------------cCCHHHhhccccCEEEecCC
Confidence 3477888888777 45556777788888888888
Q ss_pred cCcccCCC
Q 047429 412 NFSGKIPS 419 (466)
Q Consensus 412 ~l~~~ip~ 419 (466)
.+++.+|.
T Consensus 295 ~l~~~~~~ 302 (622)
T 3g06_A 295 PLSERTLQ 302 (622)
T ss_dssp CCCHHHHH
T ss_pred CCCCcCHH
Confidence 77765543
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.7e-26 Score=220.06 Aligned_cols=225 Identities=20% Similarity=0.276 Sum_probs=169.7
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCC
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMT 143 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~ 143 (466)
.+++++|++++|.++.+++ .+.. +++|++|++++|.++ .+|..+..+ ++|++|++++|.+. .+|.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~---~l~~--l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~------- 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD---QAFR--LSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPA------- 144 (328)
T ss_dssp STTCCEEEEESSCCSSCCS---CGGG--GTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCG-------
T ss_pred ccceeEEEccCCCchhcCh---hhhh--CCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcH-------
Confidence 4566667776666665443 3444 666666666666666 555666666 66666666666665 4444
Q ss_pred cccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcc---------cCCCCCcCEEEeeCCcCC
Q 047429 144 SLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKS---------FGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 144 ~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~---------l~~l~~L~~L~L~~n~l~ 213 (466)
.+..+++|++|++++|.+.+ +|.. +..+++|++|++++|+++
T Consensus 145 ----------------------------~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 145 ----------------------------SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp ----------------------------GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred ----------------------------HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 34445555555665544433 4444 445999999999999998
Q ss_pred CccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCC
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCS 293 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~ 293 (466)
.+|..+..+ ++|++|++++|.++ .+|..+..+++|++|++++ |.+.+.+|..++.
T Consensus 197 -~lp~~l~~l------~~L~~L~L~~N~l~-----------~l~~~l~~l~~L~~L~Ls~-------n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 197 -SLPASIANL------QNLKSLKIRNSPLS-----------ALGPAIHHLPKLEELDLRG-------CTALRNYPPIFGG 251 (328)
T ss_dssp -CCCGGGGGC------TTCCEEEEESSCCC-----------CCCGGGGGCTTCCEEECTT-------CTTCCBCCCCTTC
T ss_pred -cchHhhcCC------CCCCEEEccCCCCC-----------cCchhhccCCCCCEEECcC-------CcchhhhHHHhcC
Confidence 666666555 68999999999998 6677789999999999999 5567889999999
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLS 373 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 373 (466)
+++|++|+|++|.+.+.+|..+.++++| ++|+|+
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L----------------------------------------------~~L~L~ 285 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQL----------------------------------------------EKLDLR 285 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTC----------------------------------------------CEEECT
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCC----------------------------------------------CEEeCC
Confidence 9999999999999999999888777666 899999
Q ss_pred CCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 374 DNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 374 ~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+|.+.+ .+|.++.++++|+.+++..|.+.
T Consensus 286 ~n~~~~------------~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLS------------RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCC------------CCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchh------------hccHHHhhccCceEEeCCHHHHH
Confidence 999886 55667899999999999988775
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8.1e-26 Score=225.91 Aligned_cols=245 Identities=24% Similarity=0.313 Sum_probs=165.0
Q ss_pred CCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc
Q 047429 67 LRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146 (466)
Q Consensus 67 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 146 (466)
.+.++.++..++.++.. + .+++++|++++|.++...+..|..+ ++|++|+|++|.+.+..+. .|.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~---~----~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG---I----STNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIG-AFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSC---C----CTTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGG-GGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCC---C----CCCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChh-hccCCccCC
Confidence 44556666555554431 1 2456666666666665555566666 6666666666666544444 566666666
Q ss_pred ccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCc-CCCccchhhhhc
Q 047429 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNI-LTAKLPELFLNF 223 (466)
Q Consensus 147 ~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 223 (466)
.|+ +.|.++.. .+ ..|..+++|++|++++|.++.++ ..|..+++|++|++++|. +....+..+..+
T Consensus 116 ~L~L~~n~l~~~----~~-------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 116 TLELFDNRLTTI----PN-------GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp EEECCSSCCSSC----CT-------TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred EEECCCCcCCee----CH-------hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 666 55655543 22 45677788888888888887754 367788888888888744 433333344444
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
++|+.|++++|.++ .+|. +..+++|++|+|++| .+++..+..|..+++|++|+|+
T Consensus 185 ------~~L~~L~L~~n~l~-----------~~~~-~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 185 ------SNLRYLNLAMCNLR-----------EIPN-LTPLIKLDELDLSGN-------HLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp ------SSCCEEECTTSCCS-----------SCCC-CTTCSSCCEEECTTS-------CCCEECTTTTTTCTTCCEEECT
T ss_pred ------cccCeecCCCCcCc-----------cccc-cCCCcccCEEECCCC-------ccCccChhhhccCccCCEEECC
Confidence 56888888888887 5553 677788888888884 4455667788888888888888
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcH
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPE 383 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~ 383 (466)
+|.+++..+..|.++++| +.|+|++|+++ .+|
T Consensus 240 ~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~~~- 271 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQSL----------------------------------------------VEINLAHNNLT-LLP- 271 (440)
T ss_dssp TCCCCEECTTSSTTCTTC----------------------------------------------CEEECTTSCCC-CCC-
T ss_pred CCceeEEChhhhcCCCCC----------------------------------------------CEEECCCCCCC-ccC-
Confidence 888887777666665555 88899999888 222
Q ss_pred HHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 384 EITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 384 ~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+..|..+++|+.|+|++|.+.
T Consensus 272 ----------~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 ----------HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ----------TTTTSSCTTCCEEECCSSCEE
T ss_pred ----------hhHhccccCCCEEEcCCCCcc
Confidence 334678888999999998875
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9e-26 Score=226.36 Aligned_cols=245 Identities=22% Similarity=0.287 Sum_probs=168.6
Q ss_pred CCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCccc
Q 047429 67 LRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLA 146 (466)
Q Consensus 67 L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 146 (466)
.+.++.++..++.++. .+ .+++++|++++|.+++..+..|..+ ++|++|+|++|.+.+..+. .|.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~---~~----~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ---GI----PSNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVG-AFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCS---CC----CTTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTT-TTTTCTTCC
T ss_pred CcEEEECCCCcCccCC---CC----CCCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChh-hccCcccCC
Confidence 4566676666665543 11 3467777777777776666677777 7777777777777655555 666666666
Q ss_pred ccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCC-cCCCccchhhhhc
Q 047429 147 SLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDN-ILTAKLPELFLNF 223 (466)
Q Consensus 147 ~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 223 (466)
.|+ +.|.++.. .+ ..|..+++|++|++++|.++.++. .|..+++|++|++++| .+....+..+..+
T Consensus 127 ~L~L~~n~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 127 TLELFDNWLTVI----PS-------GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195 (452)
T ss_dssp EEECCSSCCSBC----CT-------TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred EEECCCCcCCcc----Ch-------hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC
Confidence 666 66666654 22 456777788888888888877543 6777888888888874 3433333334333
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
++|+.|++++|.++ .+| .+..+++|++|++++| .+++..|..|..+++|++|+++
T Consensus 196 ------~~L~~L~L~~n~l~-----------~~~-~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 196 ------FNLKYLNLGMCNIK-----------DMP-NLTPLVGLEELEMSGN-------HFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp ------TTCCEEECTTSCCS-----------SCC-CCTTCTTCCEEECTTS-------CCSEECGGGGTTCTTCCEEECT
T ss_pred ------CCCCEEECCCCccc-----------ccc-cccccccccEEECcCC-------cCcccCcccccCccCCCEEEeC
Confidence 56888888888777 443 2667778888888874 4455566777888888888888
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcH
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPE 383 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~ 383 (466)
+|.+++..|..|.++++| +.|+|++|+++ .+|
T Consensus 251 ~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~L~~N~l~-~~~- 282 (452)
T 3zyi_A 251 NSQVSLIERNAFDGLASL----------------------------------------------VELNLAHNNLS-SLP- 282 (452)
T ss_dssp TSCCCEECTTTTTTCTTC----------------------------------------------CEEECCSSCCS-CCC-
T ss_pred CCcCceECHHHhcCCCCC----------------------------------------------CEEECCCCcCC-ccC-
Confidence 888877767666665555 88999999888 222
Q ss_pred HHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 384 EITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 384 ~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
+..|..+++|+.|+|++|.+.
T Consensus 283 ----------~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 ----------HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ----------TTSSTTCTTCCEEECCSSCEE
T ss_pred ----------hHHhccccCCCEEEccCCCcC
Confidence 334678889999999999875
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2e-26 Score=218.95 Aligned_cols=251 Identities=23% Similarity=0.234 Sum_probs=197.6
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
+.++++++.++.... .+ .++|++|++++|.++.+ +..++..+++|++|++++|.++........+.. +++|
T Consensus 10 ~~l~c~~~~l~~ip~--~~--~~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~~~L 80 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT--GI--PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG--TTSL 80 (306)
T ss_dssp TEEECCSSCCSSCCS--CC--CTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS--CSCC
T ss_pred CEEEcCCCCcccCCC--CC--CCCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCccccccc--cccc
Confidence 578888888775432 22 36789999999998877 445444489999999999988755321134555 7899
Q ss_pred cEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccccc
Q 047429 96 THLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFS 174 (466)
Q Consensus 96 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~ 174 (466)
++|++++|.+.. .+..+..+ ++|++|++++|.+.+..+...+..+++|+.|+ +.|.+.+. .+ ..+.
T Consensus 81 ~~L~Ls~n~i~~-l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~-------~~~~ 147 (306)
T 2z66_A 81 KYLDLSFNGVIT-MSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FN-------GIFN 147 (306)
T ss_dssp CEEECCSCSEEE-EEEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC----ST-------TTTT
T ss_pred CEEECCCCcccc-ChhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc----ch-------hhcc
Confidence 999999998874 45567777 89999999999988655422678888999999 88888765 44 5678
Q ss_pred CCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 175 NVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 175 ~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
.+++|++|++++|.+.+ +|..+..+++|++|++++|.+++..|..+..+ ++|++|++++|.+++..
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~~~------ 215 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL------SSLQVLNMSHNNFFSLD------ 215 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTSCCSBCC------
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC------CCCCEEECCCCccCccC------
Confidence 88999999999999986 78889999999999999999988777766655 67999999999998322
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCC-CccEEEccCCCCCCCc
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP-MLQVLDFSHNNISGMV 311 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~ 311 (466)
+..+..+++|++|++++| .+++..+..+..++ +|++|++++|.+++..
T Consensus 216 ----~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 216 ----TFPYKCLNSLQVLDYSLN-------HIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp ----SGGGTTCTTCCEEECTTS-------CCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ----hhhccCcccCCEeECCCC-------CCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 235788899999999994 55677788888885 8999999999998753
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9.7e-28 Score=229.17 Aligned_cols=224 Identities=18% Similarity=0.143 Sum_probs=130.9
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
.++..+++.+.+..... ..+..+++|++|+|++|.++... +..+.. +++|++|++++|.+++.. .+.. ++
T Consensus 11 ~l~i~~ls~~~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~Ls~n~l~~~~----~~~~--l~ 80 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQIS--AADLAP-FTKLELLNLSSNVLYETL----DLES--LS 80 (317)
T ss_dssp EEEEESCCTTTHHHHHH-HHHTTGGGCSEEECTTSCCCCCC--HHHHTT-CTTCCEEECTTSCCEEEE----EETT--CT
T ss_pred ceeEeeccccchhhhHH-HHhccCCCCCEEECcCCccCcCC--HHHhhC-CCcCCEEECCCCcCCcch----hhhh--cC
Confidence 45556666666654433 45556667777777777776662 333444 777777777777765432 2444 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAF 173 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l 173 (466)
+|++|++++|.+++.. .. ++|++|++++|.+.+..+
T Consensus 81 ~L~~L~Ls~n~l~~l~-----~~-~~L~~L~l~~n~l~~~~~-------------------------------------- 116 (317)
T 3o53_A 81 TLRTLDLNNNYVQELL-----VG-PSIETLHAANNNISRVSC-------------------------------------- 116 (317)
T ss_dssp TCCEEECCSSEEEEEE-----EC-TTCCEEECCSSCCSEEEE--------------------------------------
T ss_pred CCCEEECcCCcccccc-----CC-CCcCEEECCCCccCCcCc--------------------------------------
Confidence 7777777777665432 23 567777777776653221
Q ss_pred cCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccchhhh-hccccccccccceEecCCccccccCCCCcc
Q 047429 174 SNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFL-NFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
..+++|++|++++|.++.+ +..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.++
T Consensus 117 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l------~~L~~L~L~~N~l~-------- 182 (317)
T 3o53_A 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS------DTLEHLNLQYNFIY-------- 182 (317)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT------TTCCEEECTTSCCC--------
T ss_pred cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc------CcCCEEECCCCcCc--------
Confidence 1234566666666666663 33556666677777777766655544432 22 45667777777666
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNL 318 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 318 (466)
.+|. ...+++|++|++++|++ ..+|..+..+++|++|++++|.++ .+|..+..+
T Consensus 183 ---~~~~-~~~l~~L~~L~Ls~N~l--------~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 183 ---DVKG-QVVFAKLKTLDLSSNKL--------AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp ---EEEC-CCCCTTCCEEECCSSCC--------CEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred ---cccc-ccccccCCEEECCCCcC--------CcchhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 2222 22356677777776544 234444666677777777777766 344444333
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.3e-25 Score=211.24 Aligned_cols=211 Identities=23% Similarity=0.276 Sum_probs=130.6
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L 120 (466)
++++.++++++.+ |..+ .++|++|++++|.++..++ ..+.. +++|++|++++|.+++..+..+..+ ++|
T Consensus 14 ~~~~c~~~~l~~i---p~~~---~~~l~~L~l~~n~i~~~~~--~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l-~~L 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAV---PVGI---PAASQRIFLHGNRISHVPA--ASFRA--CRNLTILWLHSNVLARIDAAAFTGL-ALL 82 (285)
T ss_dssp CEEECCSSCCSSC---CTTC---CTTCSEEECTTSCCCEECT--TTTTT--CTTCCEEECCSSCCCEECTTTTTTC-TTC
T ss_pred eEEEcCcCCcccC---CcCC---CCCceEEEeeCCcCCccCH--HHccc--CCCCCEEECCCCccceeCHhhcCCc-cCC
Confidence 4566666666555 2211 3466666666666665544 34444 5666666666666665555566665 666
Q ss_pred cEEEccCCc-cccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCC-CcccCC
Q 047429 121 VYLDLSNNQ-LQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGD 198 (466)
Q Consensus 121 ~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~ 198 (466)
++|++++|. +....+ ..+..+++|++|++++|.++++ +..+..
T Consensus 83 ~~L~l~~n~~l~~~~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 127 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDP-----------------------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRG 127 (285)
T ss_dssp CEEECCSCTTCCCCCT-----------------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CEEeCCCCCCccccCH-----------------------------------HHhcCCcCCCEEECCCCcCCEECHhHhhC
Confidence 666666665 442222 3455566677777777777663 455666
Q ss_pred CCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeee
Q 047429 199 MCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLW 277 (466)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~ 277 (466)
+++|++|++++|.+++..+..+..+ ++|++|++++|+++ .+|. .+..+++|++|++++|
T Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n--- 187 (285)
T 1ozn_A 128 LAALQYLYLQDNALQALPDDTFRDL------GNLTHLFLHGNRIS-----------SVPERAFRGLHSLDRLLLHQN--- 187 (285)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSS---
T ss_pred CcCCCEEECCCCcccccCHhHhccC------CCccEEECCCCccc-----------ccCHHHhcCccccCEEECCCC---
Confidence 7777777777777765555544444 46777777777776 3333 3666777777777774
Q ss_pred eecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 278 LRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 278 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
.+++..|..+..+++|++|++++|.+++..+..|..+++|
T Consensus 188 ----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 188 ----RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp ----CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred ----cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 4455556777777777777777777777666666665555
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=220.42 Aligned_cols=236 Identities=19% Similarity=0.179 Sum_probs=182.6
Q ss_pred ccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
+..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+++.. . +.. +++|++|++++|.+++.+.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~-l~~L~~L~Ls~n~l~~l~~------ 97 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETL---D-LES-LSTLRTLDLNNNYVQELLV------ 97 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCH-HHHTTCTTCCEEECTTSCCEEEE---E-ETT-CTTCCEEECCSSEEEEEEE------
T ss_pred hccCCCCCEEECcCCccCcCCH-HHhhCCCcCCEEECCCCcCCcch---h-hhh-cCCCCEEECcCCccccccC------
Confidence 4567799999999999998877 88999999999999999998763 2 444 9999999999998875543
Q ss_pred cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccC
Q 047429 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVR 168 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~ 168 (466)
.++|++|++++|.+++..+.. + ++|++|++++|.+++..+.
T Consensus 98 ---~~~L~~L~l~~n~l~~~~~~~---~-~~L~~L~l~~N~l~~~~~~-------------------------------- 138 (317)
T 3o53_A 98 ---GPSIETLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDL-------------------------------- 138 (317)
T ss_dssp ---CTTCCEEECCSSCCSEEEECC---C-SSCEEEECCSSCCCSGGGB--------------------------------
T ss_pred ---CCCcCEEECCCCccCCcCccc---c-CCCCEEECCCCCCCCccch--------------------------------
Confidence 689999999999999776544 4 7899999999998853332
Q ss_pred ccccccCCCccCEEecCCCcCCCC-Cccc-CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccC
Q 047429 169 PKYAFSNVTSLMDLDLSKNQITGI-PKSF-GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSL 246 (466)
Q Consensus 169 ~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 246 (466)
.+..+++|++|++++|.++++ +..+ ..+++|++|++++|.+++..+..+ .++|++|++++|+++
T Consensus 139 ---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------l~~L~~L~Ls~N~l~--- 204 (317)
T 3o53_A 139 ---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--------FAKLKTLDLSSNKLA--- 204 (317)
T ss_dssp ---CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC--------CTTCCEEECCSSCCC---
T ss_pred ---hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc--------cccCCEEECCCCcCC---
Confidence 344566777777777777763 3333 356777777777777765422211 256888888888887
Q ss_pred CCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC-CCchhhhhhhhhhhhcC
Q 047429 247 PGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS-GMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 247 ~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~ 325 (466)
.+|..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++
T Consensus 205 --------~l~~~~~~l~~L~~L~L~~N~l--------~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 205 --------FMGPEFQSAAGVTWISLRNNKL--------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp --------EECGGGGGGTTCSEEECTTSCC--------CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred --------cchhhhcccCcccEEECcCCcc--------cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 5555677788888999888665 356777888899999999999998 77788888888887776
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=9.5e-26 Score=212.06 Aligned_cols=228 Identities=21% Similarity=0.233 Sum_probs=174.2
Q ss_pred CcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCC
Q 047429 15 LQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSS 94 (466)
Q Consensus 15 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~ 94 (466)
-++++++++.++.. | . ...++|++|++++|.++.+ +...+..+++|++|++++|.+++..+ ..+.. +++
T Consensus 13 ~~~~~c~~~~l~~i-p-~--~~~~~l~~L~l~~n~i~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~--l~~ 81 (285)
T 1ozn_A 13 KVTTSCPQQGLQAV-P-V--GIPAASQRIFLHGNRISHV---PAASFRACRNLTILWLHSNVLARIDA--AAFTG--LAL 81 (285)
T ss_dssp SCEEECCSSCCSSC-C-T--TCCTTCSEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCCEECT--TTTTT--CTT
T ss_pred CeEEEcCcCCcccC-C-c--CCCCCceEEEeeCCcCCcc---CHHHcccCCCCCEEECCCCccceeCH--hhcCC--ccC
Confidence 36899999988855 3 2 2357899999999999887 33333449999999999999998766 57777 999
Q ss_pred ccEEEcCCCC-CCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccc
Q 047429 95 LTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAF 173 (466)
Q Consensus 95 L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l 173 (466)
|++|++++|. +....+..+..+ ++|++|++++|.+.+..+. .+
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~-----------------------------------~~ 125 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPG-----------------------------------LF 125 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTT-----------------------------------TT
T ss_pred CCEEeCCCCCCccccCHHHhcCC-cCCCEEECCCCcCCEECHh-----------------------------------Hh
Confidence 9999999997 887778889998 9999999999998854433 34
Q ss_pred cCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 174 SNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
..+++|++|++++|.++.++. .+..+++|++|++++|++++..+..+..+ ++|+.|++++|.+++.
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~~~------- 192 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL------HSLDRLLLHQNRVAHV------- 192 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC------TTCCEEECCSSCCCEE-------
T ss_pred hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc------cccCEEECCCCccccc-------
Confidence 556677777777777777543 46777788888888887776555545444 5688888888887732
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCch
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 312 (466)
.|..+..+++|++|++++|.+ ++..+..+..+++|++|++++|++....+
T Consensus 193 ---~~~~~~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 193 ---HPHAFRDLGRLMTLYLFANNL-------SALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCC-------SCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ---CHhHccCcccccEeeCCCCcC-------CcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 245678888899999988544 44444568888999999999999876543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=221.31 Aligned_cols=248 Identities=20% Similarity=0.207 Sum_probs=196.2
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..+.++.++..++.. | ..+ .++++.|+|++|.++.+. +..+.. +++|++|+|++|.++...+ ..+.. ++
T Consensus 44 ~~~~v~c~~~~l~~i-P-~~~--~~~l~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~i~~i~~--~~~~~--l~ 112 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-P-DGI--STNTRLLNLHENQIQIIK--VNSFKH-LRHLEILQLSRNHIRTIEI--GAFNG--LA 112 (440)
T ss_dssp TSCEEECCSCCCSSC-C-SCC--CTTCSEEECCSCCCCEEC--TTTTSS-CSSCCEEECCSSCCCEECG--GGGTT--CS
T ss_pred CCCEEEeCCCCcCcC-C-CCC--CCCCcEEEccCCcCCeeC--HHHhhC-CCCCCEEECCCCcCCccCh--hhccC--Cc
Confidence 356788888877744 3 222 367889999999888773 233444 8999999999998887766 56777 88
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cc-cccccccccCCCccccCccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SL-NYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~-n~l~~~~~~~l~~~~~~~~~ 171 (466)
+|++|++++|.++...+..|..+ ++|++|++++|.+....+. .|..+++|+.|+ +. +.+... -+ .
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i----~~-------~ 179 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYI----SE-------G 179 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEE----CT-------T
T ss_pred cCCEEECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHH-HhhhCcccCEeCCCCCCCccee----Cc-------c
Confidence 99999999999987777778888 8999999999998865555 788889999998 65 444443 12 4
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.|..+++|++|++++|.++.+|. +..+++|++|++++|.+++..+..+..+ ++|+.|++++|++++..
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~n~l~~~~----- 247 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL------MHLQKLWMIQSQIQVIE----- 247 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTC------TTCCEEECTTCCCCEEC-----
T ss_pred hhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccC------ccCCEEECCCCceeEEC-----
Confidence 68889999999999999998874 7889999999999999998878777666 68999999999998432
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
+..|..+++|+.|+|++|+ +++..+..+..+++|+.|+|++|.+.-
T Consensus 248 -----~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 248 -----RNAFDNLQSLVEINLAHNN-------LTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp -----TTSSTTCTTCCEEECTTSC-------CCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred -----hhhhcCCCCCCEEECCCCC-------CCccChhHhccccCCCEEEcCCCCccC
Confidence 3568889999999999954 455566678889999999999999763
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.7e-25 Score=221.90 Aligned_cols=248 Identities=21% Similarity=0.203 Sum_probs=201.3
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..+.++.++..++.. | ..+ .+++++|+|++|.++.+. +..+.. +++|++|+|++|.++...+ ..+.. ++
T Consensus 55 ~~~~v~c~~~~l~~i-P-~~~--~~~l~~L~L~~n~i~~~~--~~~~~~-l~~L~~L~Ls~n~i~~~~~--~~~~~--l~ 123 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV-P-QGI--PSNTRYLNLMENNIQMIQ--ADTFRH-LHHLEVLQLGRNSIRQIEV--GAFNG--LA 123 (452)
T ss_dssp SSCEEECCSSCCSSC-C-SCC--CTTCSEEECCSSCCCEEC--TTTTTT-CTTCCEEECCSSCCCEECT--TTTTT--CT
T ss_pred CCcEEEECCCCcCcc-C-CCC--CCCccEEECcCCcCceEC--HHHcCC-CCCCCEEECCCCccCCcCh--hhccC--cc
Confidence 346788888887754 3 222 367999999999998873 334444 9999999999999988776 56777 89
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cc-cccccccccCCCccccCccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SL-NYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~-n~l~~~~~~~l~~~~~~~~~ 171 (466)
+|++|++++|.++...+..|..+ ++|++|++++|.+....+. .|.++++|+.|+ +. +.+... -+ .
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i----~~-------~ 190 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSY-AFNRVPSLMRLDLGELKKLEYI----SE-------G 190 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEE----CT-------T
T ss_pred cCCEEECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHh-HHhcCCcccEEeCCCCCCcccc----Ch-------h
Confidence 99999999999998777778888 9999999999999865555 888999999999 65 445443 11 4
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.|..+++|++|++++|.++++| .+..+++|++|++++|.+++..|..+..+ ++|+.|++++|++++..
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~n~l~~~~----- 258 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL------SSLKKLWVMNSQVSLIE----- 258 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTC------TTCCEEECTTSCCCEEC-----
T ss_pred hccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCc------cCCCEEEeCCCcCceEC-----
Confidence 6888999999999999999986 47889999999999999998888877766 68999999999998432
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
|..|..+++|+.|+|++|+ +++..+..+..+++|+.|+|++|.+.-
T Consensus 259 -----~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 259 -----RNAFDGLASLVELNLAHNN-------LSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp -----TTTTTTCTTCCEEECCSSC-------CSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred -----HHHhcCCCCCCEEECCCCc-------CCccChHHhccccCCCEEEccCCCcCC
Confidence 4568899999999999954 455556678899999999999999764
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.5e-27 Score=222.50 Aligned_cols=257 Identities=19% Similarity=0.141 Sum_probs=188.6
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHh-------cCCCCCCEEEcCCCCCC
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVI-------TGLPSLRELDLSSSAPP 78 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------~~l~~L~~L~Ls~n~l~ 78 (466)
.+.++..++|++|++++|.+ ..| ..+... |+.|+|++|.++... ++..+. . +++|++|++++|.++
T Consensus 36 ~~~~~~~~~L~~l~l~~n~l--~~p-~~~~~~--L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 36 VELYGGGRSLEYLLKRVDTE--ADL-GQFTDI--IKSLSLKRLTVRAAR-IPSRILFGALRVLG-ISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEEEEECTTHHHHCCTT--CCC-HHHHHH--HHHCCCCEEEEEEEE-CBHHHHHHHHHHHT-TSCCCEEEEEEEBCB
T ss_pred EEEEccCCCceeEeeccccc--ccH-HHHHHH--HhhcccccccccCCC-cCHHHHHHHHHhcC-cCCccEEEccCCccc
Confidence 44567788899999999998 344 444433 888899999886531 133333 4 899999999999998
Q ss_pred CCCcccccc--ccCCCCCccEEEcCCCCCCchhhhhhhcc----cCCCcEEEccCCccccCCChhhhhcCCcccccc-cc
Q 047429 79 KINYRSHSL--VNSSSSSLTHLHLSLCGLSNSAYHCLSHI----SKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SL 151 (466)
Q Consensus 79 ~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l----~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~ 151 (466)
+..+ ..+ .. +++|++|++++|.+++. |..+..+ .++|++|++++|.+.+..+. .++.+++|++|+ +.
T Consensus 109 ~~~~--~~~~~~~--l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 109 GTAP--PPLLEAT--GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSD 182 (312)
T ss_dssp SCCC--CCSSSCC--SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCS
T ss_pred chhH--HHHHHhc--CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCC
Confidence 6655 333 55 88999999999999876 6666554 26899999999999877667 888899999999 88
Q ss_pred cccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC----cccCCCCCcCEEEeeCCcCCCccch-hhhhcccc
Q 047429 152 NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP----KSFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAG 226 (466)
Q Consensus 152 n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~ 226 (466)
|.+.+... ++. ...+..+++|++|++++|.+++++ ..+..+++|++|++++|.+++..|. .+...
T Consensus 183 N~l~~~~~--~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--- 252 (312)
T 1wwl_A 183 NPELGERG--LIS-----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP--- 252 (312)
T ss_dssp CTTCHHHH--HHH-----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC---
T ss_pred CCcCcchH--HHH-----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc---
Confidence 87654200 110 012377889999999999988532 2345778999999999998876642 22222
Q ss_pred ccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC
Q 047429 227 CAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN 306 (466)
Q Consensus 227 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~ 306 (466)
++|++|++++|.++ .+|..+. ++|++|++++|++ ++ +|. +..+++|++|++++|+
T Consensus 253 ---~~L~~L~Ls~N~l~-----------~ip~~~~--~~L~~L~Ls~N~l-------~~-~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 ---SQLNSLNLSFTGLK-----------QVPKGLP--AKLSVLDLSYNRL-------DR-NPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ---TTCCEEECTTSCCS-----------SCCSSCC--SEEEEEECCSSCC-------CS-CCC-TTTSCEEEEEECTTCT
T ss_pred ---CCCCEEECCCCccC-----------hhhhhcc--CCceEEECCCCCC-------CC-Chh-HhhCCCCCEEeccCCC
Confidence 57999999999988 5666655 7899999998655 33 355 8888999999999999
Q ss_pred CCCC
Q 047429 307 ISGM 310 (466)
Q Consensus 307 l~~~ 310 (466)
+++.
T Consensus 308 l~~~ 311 (312)
T 1wwl_A 308 FLDS 311 (312)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8753
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.8e-26 Score=227.62 Aligned_cols=230 Identities=19% Similarity=0.150 Sum_probs=161.2
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK 118 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 118 (466)
+|++|+|++|.++... +..+.. +++|++|+|++|.+++..+ +.. +++|++|++++|.+++.. .. +
T Consensus 35 ~L~~L~Ls~n~l~~~~--~~~~~~-l~~L~~L~Ls~N~l~~~~~----l~~--l~~L~~L~Ls~N~l~~l~-----~~-~ 99 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS--AADLAP-FTKLELLNLSSNVLYETLD----LES--LSTLRTLDLNNNYVQELL-----VG-P 99 (487)
T ss_dssp GCCEEECCSSCCCCCC--GGGGTT-CTTCCEEECTTSCCEEEEE----CTT--CTTCCEEECCSSEEEEEE-----EC-T
T ss_pred CccEEEeeCCcCCCCC--HHHHhC-CCCCCEEEeeCCCCCCCcc----ccc--CCCCCEEEecCCcCCCCC-----CC-C
Confidence 6677777777666652 223333 6677777777766654322 444 666777777777665432 22 5
Q ss_pred CCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCccc
Q 047429 119 SLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSF 196 (466)
Q Consensus 119 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l 196 (466)
+|++|++++|.+.+..+. .+++|+.|+ +.|.+++. .| ..+..+++|++|++++|.+++ .|..+
T Consensus 100 ~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~----~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS----RGQGKKNIYLANNKITML----RD-------LDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp TCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSG----GG-------BCGGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCC----Cc-------hhhcCCCCCCEEECCCCCCCCcChHHH
Confidence 667777777766643322 345666666 66666654 33 467778889999999998888 55566
Q ss_pred C-CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCe
Q 047429 197 G-DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQ 275 (466)
Q Consensus 197 ~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~ 275 (466)
. .+++|++|+|++|.+++..+.. . .++|+.|++++|.++ .+|..+..+++|+.|++++|.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~--~------l~~L~~L~Ls~N~l~-----------~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDVKGQV--V------FAKLKTLDLSSNKLA-----------FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCC--C------CTTCCEEECCSSCCC-----------EECGGGGGGTTCSEEECTTSC
T ss_pred hhhCCcccEEecCCCccccccccc--c------CCCCCEEECCCCCCC-----------CCCHhHcCCCCccEEEecCCc
Confidence 4 6889999999999888653322 1 257999999999998 455568888999999999966
Q ss_pred eeeecccccccCCCCCCCCCCccEEEccCCCCC-CCchhhhhhhhhhhhcC
Q 047429 276 LWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS-GMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 276 l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~ 325 (466)
+ + .+|..+..+++|+.|++++|.+. +.+|..+..++.++.+.
T Consensus 226 l-------~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 226 L-------V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp C-------C-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred C-------c-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 5 3 47778889999999999999998 67788888888887665
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.6e-26 Score=220.26 Aligned_cols=238 Identities=20% Similarity=0.157 Sum_probs=185.3
Q ss_pred HhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc-------cCCCCCccEEEcCCCCC
Q 047429 33 WLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV-------NSSSSSLTHLHLSLCGL 105 (466)
Q Consensus 33 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------~~~l~~L~~L~Ls~n~l 105 (466)
.++..++|++|++++|.+ .+ |..+.. . |++|++++|.+...... ..+. . +++|++|++++|.+
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~---p~~~~~-~--L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~--l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-AD---LGQFTD-I--IKSLSLKRLTVRAARIP-SRILFGALRVLG--ISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CC---CHHHHH-H--HHHCCCCEEEEEEEECB-HHHHHHHHHHHT--TSCCCEEEEEEEBC
T ss_pred EEccCCCceeEeeccccc-cc---HHHHHH-H--HhhcccccccccCCCcC-HHHHHHHHHhcC--cCCccEEEccCCcc
Confidence 355677899999999999 55 666666 3 88999999988543211 2222 4 78999999999999
Q ss_pred Cchhhhhh--hcccCCCcEEEccCCccccCCChhhhhcC-----Ccccccc-cccccccccccCCCccccCccccccCCC
Q 047429 106 SNSAYHCL--SHISKSLVYLDLSNNQLQGPTPDYAFRNM-----TSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVT 177 (466)
Q Consensus 106 ~~~~~~~l--~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~ 177 (466)
++..|..+ ..+ ++|++|++++|.+++. |. .++.+ ++|++|+ +.|.+++. .+ ..+..++
T Consensus 108 ~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~----~~-------~~~~~l~ 173 (312)
T 1wwl_A 108 TGTAPPPLLEATG-PDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNF----SC-------EQVRVFP 173 (312)
T ss_dssp BSCCCCCSSSCCS-CCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCC----CT-------TTCCCCS
T ss_pred cchhHHHHHHhcC-CCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccc----hH-------HHhccCC
Confidence 98888876 777 9999999999999976 76 78877 8999999 99999886 44 6788999
Q ss_pred ccCEEecCCCcCCC---CCccc--CCCCCcCEEEeeCCcCCCcc--c-hhhhhccccccccccceEecCCccccccCCCC
Q 047429 178 SLMDLDLSKNQITG---IPKSF--GDMCCLKTLKIHDNILTAKL--P-ELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGV 249 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~---~~~~l--~~l~~L~~L~L~~n~l~~~~--~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 249 (466)
+|++|++++|.+.+ ++..+ ..+++|++|++++|++++.. + ..+..+ ++|++|++++|++++..|.
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l------~~L~~L~Ls~N~l~~~~~~- 246 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR------VQLQGLDLSHNSLRDAAGA- 246 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT------CCCSEEECTTSCCCSSCCC-
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC------CCCCEEECCCCcCCcccch-
Confidence 99999999999765 23333 88999999999999998422 1 222222 5799999999999854321
Q ss_pred cccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 250 TELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 250 ~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
..+..+++|++|++++|++ ..+|..+. ++|++||+++|++++. |. +..+++|
T Consensus 247 --------~~~~~l~~L~~L~Ls~N~l--------~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 247 --------PSCDWPSQLNSLNLSFTGL--------KQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp --------SCCCCCTTCCEEECTTSCC--------SSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred --------hhhhhcCCCCEEECCCCcc--------Chhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 3456689999999999765 36777666 8999999999999976 54 6665555
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.4e-23 Score=216.47 Aligned_cols=246 Identities=25% Similarity=0.285 Sum_probs=200.0
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
++|++|++++|.++.. + . .+++|++|+|++|.++.+ +. . +++|++|++++|.++.++. . +
T Consensus 61 ~~L~~L~L~~N~l~~l-p-~---~l~~L~~L~Ls~N~l~~l---p~---~-l~~L~~L~Ls~N~l~~l~~------~--l 120 (622)
T 3g06_A 61 AHITTLVIPDNNLTSL-P-A---LPPELRTLEVSGNQLTSL---PV---L-PPGLLELSIFSNPLTHLPA------L--P 120 (622)
T ss_dssp TTCSEEEECSCCCSCC-C-C---CCTTCCEEEECSCCCSCC---CC---C-CTTCCEEEECSCCCCCCCC------C--C
T ss_pred CCCcEEEecCCCCCCC-C-C---cCCCCCEEEcCCCcCCcC---CC---C-CCCCCEEECcCCcCCCCCC------C--C
Confidence 7899999999999854 3 2 579999999999999987 33 3 8999999999999988654 2 7
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
++|++|++++|.++.. |.. + ++|++|++++|.+++ +|. .+.+|+.|+ +.|.++.+ |
T Consensus 121 ~~L~~L~L~~N~l~~l-p~~---l-~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l-----~-------- 177 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSL-PVL---P-PGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTSL-----P-------- 177 (622)
T ss_dssp TTCCEEECCSSCCSCC-CCC---C-TTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCC-----C--------
T ss_pred CCcCEEECCCCCCCcC-CCC---C-CCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCCC-----c--------
Confidence 8999999999999864 433 3 889999999999984 443 356788999 88988874 2
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
..+++|+.|++++|.++++|.. +++|+.|++++|.++... .. +++|+.|++++|.++
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~-~~---------~~~L~~L~Ls~N~L~-------- 234 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP-AL---------PSGLKELIVSGNRLT-------- 234 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CC---------CTTCCEEECCSSCCS--------
T ss_pred --ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccC-CC---------CCCCCEEEccCCccC--------
Confidence 3468899999999999998764 478999999999998533 21 257999999999998
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCcee
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.+| ..+++|++|++++|.| ..+|. .+++|+.|+|++|.++ .+|..|.++++|
T Consensus 235 ---~lp---~~l~~L~~L~Ls~N~L--------~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L---------- 286 (622)
T 3g06_A 235 ---SLP---VLPSELKELMVSGNRL--------TSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE---------- 286 (622)
T ss_dssp ---CCC---CCCTTCCEEECCSSCC--------SCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT----------
T ss_pred ---cCC---CCCCcCcEEECCCCCC--------CcCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc----------
Confidence 555 3458899999999766 34555 6788999999999999 667777776666
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
+.|+|++|.+++.+|..+..+
T Consensus 287 ------------------------------------~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 287 ------------------------------------TTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ------------------------------------CEEECCSCCCCHHHHHHHHHH
T ss_pred ------------------------------------CEEEecCCCCCCcCHHHHHhc
Confidence 899999999998888776654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.5e-25 Score=220.78 Aligned_cols=233 Identities=23% Similarity=0.210 Sum_probs=179.8
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 144 (466)
++|++|+|++|.++..++ ..+.. +++|++|++++|.+++..+ +..+ ++|++|+|++|.+++. ...++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~--~~~~~--l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l------~~~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISA--ADLAP--FTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQEL------LVGPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCG--GGGTT--CTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEE------EECTT
T ss_pred CCccEEEeeCCcCCCCCH--HHHhC--CCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCC------CCCCC
Confidence 489999999999999877 57777 9999999999999987665 7888 9999999999998842 23478
Q ss_pred ccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCccchhhh-
Q 047429 145 LASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAKLPELFL- 221 (466)
Q Consensus 145 L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~- 221 (466)
|+.|+ +.|.+++. . ...+++|+.|++++|.+++ .|..+..+++|++|++++|.+++..|..+.
T Consensus 101 L~~L~L~~N~l~~~----~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 101 IETLHAANNNISRV----S----------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp CCEEECCSSCCCCE----E----------ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred cCEEECcCCcCCCC----C----------ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 88898 88888775 1 2345788999999999988 456788888999999999999887776654
Q ss_pred hccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEE
Q 047429 222 NFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLD 301 (466)
Q Consensus 222 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~ 301 (466)
.+ ++|+.|++++|.+++. |. ...+++|++|+|++|.+ + .+|+.+..+++|+.|+
T Consensus 167 ~l------~~L~~L~Ls~N~l~~~-----------~~-~~~l~~L~~L~Ls~N~l-------~-~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 167 SS------DTLEHLNLQYNFIYDV-----------KG-QVVFAKLKTLDLSSNKL-------A-FMGPEFQSAAGVTWIS 220 (487)
T ss_dssp GT------TTCCEEECTTSCCCEE-----------EC-CCCCTTCCEEECCSSCC-------C-EECGGGGGGTTCSEEE
T ss_pred hC------CcccEEecCCCccccc-----------cc-cccCCCCCEEECCCCCC-------C-CCCHhHcCCCCccEEE
Confidence 33 5789999999988833 22 33578899999988655 3 4555688888899999
Q ss_pred ccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC-cC
Q 047429 302 FSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS-GK 380 (466)
Q Consensus 302 Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~~ 380 (466)
|++|.+++ +|..+..++ .|+.|++++|.+. +.
T Consensus 221 Ls~N~l~~-lp~~l~~l~----------------------------------------------~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 221 LRNNKLVL-IEKALRFSQ----------------------------------------------NLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CTTSCCCE-ECTTCCCCT----------------------------------------------TCCEEECTTCCBCHHH
T ss_pred ecCCcCcc-cchhhccCC----------------------------------------------CCCEEEcCCCCCcCcc
Confidence 99998885 555554444 4488999999887 33
Q ss_pred CcHHHHhhccCCCcccccCCCCCCeeecc
Q 047429 381 IPEEITSLLIGKIPRSFSQLSHLGVVNLS 409 (466)
Q Consensus 381 ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls 409 (466)
+ |..+..++.|+.++++
T Consensus 254 ~------------~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 L------------RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp H------------HHHHTTCHHHHHHHHH
T ss_pred h------------HHHHHhCCCCcEEecc
Confidence 3 3446667777777775
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.4e-23 Score=194.67 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=135.1
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
+|++|++++|.++..++ ..+.. +++|++|++++|.++...+..+..+ ++|++|++++|.+.+..+. .+.++++|
T Consensus 29 ~l~~L~ls~n~l~~~~~--~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L 102 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS--YSFFS--FPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALG-AFSGLSSL 102 (276)
T ss_dssp TCCEEECTTCCCCEECT--TTTTT--CTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTT-TTTTCTTC
T ss_pred CccEEECCCCcccccCH--hHhcc--ccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChh-hhcCCccc
Confidence 34444444444444333 23333 4444444444444444444444444 4455555555544433333 44444455
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeCCcCCCccchhhhh
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
++|+ +.|.++.. .+ ..+..+++|++|++++|.++. +|..+..+++|++|++++|++++..+..+..
T Consensus 103 ~~L~l~~n~l~~~----~~-------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 103 QKLVAVETNLASL----EN-------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CEEECTTSCCCCS----TT-------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred cEEECCCCCcccc----Cc-------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 5554 44444443 12 357788999999999999987 6888999999999999999999877776665
Q ss_pred ccccccccccc----eEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCcc
Q 047429 223 FSAGCAKKSLQ----SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQ 298 (466)
Q Consensus 223 ~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~ 298 (466)
+ .+|+ .|++++|.++ .++.......+|++|++++|++ ++..+..+..+++|+
T Consensus 172 l------~~L~~l~l~L~ls~n~l~-----------~~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 172 L------HQMPLLNLSLDLSLNPMN-----------FIQPGAFKEIRLKELALDTNQL-------KSVPDGIFDRLTSLQ 227 (276)
T ss_dssp H------HTCTTCCEEEECCSSCCC-----------EECTTSSCSCCEEEEECCSSCC-------SCCCTTTTTTCCSCC
T ss_pred h------hhccccceeeecCCCccc-----------ccCccccCCCcccEEECCCCce-------eecCHhHhccccccc
Confidence 5 3455 8999999998 4444445556899999999554 545555678999999
Q ss_pred EEEccCCCCCCCch
Q 047429 299 VLDFSHNNISGMVP 312 (466)
Q Consensus 299 ~L~Ls~N~l~~~~p 312 (466)
+|++++|++.+..+
T Consensus 228 ~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 228 KIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCcccccCC
Confidence 99999999997654
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1e-24 Score=212.11 Aligned_cols=276 Identities=19% Similarity=0.168 Sum_probs=195.7
Q ss_pred EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccc--hHHHHhcCCC-CCCEEEcCCCCCCCCCccccccccCCC-
Q 047429 17 SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATD--WLQVVITGLP-SLRELDLSSSAPPKINYRSHSLVNSSS- 92 (466)
Q Consensus 17 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~l- 92 (466)
++++++|.+++..+ ..+...++|++|+|++|.++.... +...+.. ++ +|++|+|++|.++...+ ..+.. +
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~--~~l~~--~l 75 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN-TPASVTSLNLSGNSLGFKNS--DELVQ--IL 75 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT-CCTTCCEEECCSSCGGGSCH--HHHHH--HH
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHh-CCCceeEEECcCCCCCHHHH--HHHHH--HH
Confidence 46788888887766 666666679999999999887631 1134444 77 89999999998887655 34443 3
Q ss_pred ----CCccEEEcCCCCCCchhhhhhhcc----cCCCcEEEccCCccccCCChhhhhc-----CCcccccc-ccccccccc
Q 047429 93 ----SSLTHLHLSLCGLSNSAYHCLSHI----SKSLVYLDLSNNQLQGPTPDYAFRN-----MTSLASLT-SLNYITGIS 158 (466)
Q Consensus 93 ----~~L~~L~Ls~n~l~~~~~~~l~~l----~~~L~~L~Ls~n~l~~~~~~~~~~~-----l~~L~~L~-~~n~l~~~~ 158 (466)
++|++|++++|.+++..+..+... .++|++|++++|.+++..+. .+.. .++|++|+ +.|.+++.+
T Consensus 76 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred hccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 789999999999887666654432 15799999999998866554 4443 35899999 888888654
Q ss_pred ccCCCccccCccccccCCC-ccCEEecCCCcCCCCC-----cccCCC-CCcCEEEeeCCcCCCccchhhhhccccccccc
Q 047429 159 KCSLPITLVRPKYAFSNVT-SLMDLDLSKNQITGIP-----KSFGDM-CCLKTLKIHDNILTAKLPELFLNFSAGCAKKS 231 (466)
Q Consensus 159 ~~~l~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~-----~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 231 (466)
...++ ..+...+ +|++|++++|.+++.. ..+..+ ++|++|++++|.+++.....+...+.. .+++
T Consensus 155 ~~~l~-------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~ 226 (362)
T 3goz_A 155 SDELI-------QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-IPNH 226 (362)
T ss_dssp HHHHH-------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-SCTT
T ss_pred HHHHH-------HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-CCCC
Confidence 43344 4555665 9999999999998732 244555 599999999999987554433332211 1247
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccccc----ccCCCCCCCCCCccEEEccCCCC
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHIN----GSATPKLCSSPMLQVLDFSHNNI 307 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~----~~~~~~~~~l~~L~~L~Ls~N~l 307 (466)
|++|++++|.+++..+. .+...+..+++|++|++++|.+ ..++ ..++..+..+++|++||+++|.+
T Consensus 227 L~~L~Ls~N~l~~~~~~------~l~~~~~~l~~L~~L~L~~n~l----~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLE------NLKLLKDSLKHLQTVYLDYDIV----KNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCEEECCSSCCCCCCHH------HHHHTTTTTTTCSEEEEEHHHH----TTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ceEEECcCCCCCcHHHH------HHHHHHhcCCCccEEEeccCCc----cccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 99999999999854321 3344567889999999999764 2222 23445678899999999999999
Q ss_pred CCCchhhhhh
Q 047429 308 SGMVPTCLNN 317 (466)
Q Consensus 308 ~~~~p~~~~~ 317 (466)
.+..+..+.+
T Consensus 297 ~~~~~~~~~~ 306 (362)
T 3goz_A 297 HPSHSIPISN 306 (362)
T ss_dssp CGGGCHHHHH
T ss_pred CCcchHHHHH
Confidence 8776655544
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.9e-23 Score=192.52 Aligned_cols=205 Identities=23% Similarity=0.248 Sum_probs=127.6
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
++++|++++|.+++..+ ..+..+++|++|++++|.++.+ +...+..+++|++|++++|.++...+ ..+.. ++
T Consensus 29 ~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~--l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILTGNPIQSLAL--GAFSG--LS 100 (276)
T ss_dssp TCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEE---CTTTTTTCTTCCEEECTTCCCCEECT--TTTTT--CT
T ss_pred CccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCcc---CHHHccCCcCCCEEECCCCccCccCh--hhhcC--Cc
Confidence 57777777777766554 5667777777777777776655 22223336777777777777766554 45555 67
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccC-CChhhhhcCCcccccc-cccccccccccCCCccccCccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP-TPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKY 171 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~ 171 (466)
+|++|++++|.+.+..+..+..+ ++|++|++++|.+.+. .|. .+..+++|+.|+ +.|.+++. .+ .
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~ 167 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSI----YC-------T 167 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEE----CG-------G
T ss_pred cccEEECCCCCccccCchhcccC-CCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcC----CH-------H
Confidence 77777777777766555566666 7777777777777643 355 666667777777 66666654 22 2
Q ss_pred cccCCCccC----EEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 172 AFSNVTSLM----DLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 172 ~l~~l~~L~----~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
.+..+++|+ .|++++|.++.++.......+|++|++++|.+++..+..+..+ ++|+.|++++|.+++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTC------CSCCEEECCSSCBCCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccc------ccccEEEccCCccccc
Confidence 344444444 6667777666654444444466777777776665555444433 4566666666666543
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.3e-23 Score=190.90 Aligned_cols=181 Identities=25% Similarity=0.339 Sum_probs=88.3
Q ss_pred cccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 8 FHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
....+++|+.|++++|.++.. ..+..+++|++|++++|.+++. + .+.. +++|++|++++|.+++.++ ..+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~~---~-~l~~-l~~L~~L~L~~n~l~~~~~--~~~ 105 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHDI---S-ALKE-LTNLTYLILTGNQLQSLPN--GVF 105 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCCC---G-GGTT-CTTCCEEECTTSCCCCCCT--TTT
T ss_pred ccccccceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCCc---h-hhcC-CCCCCEEECCCCccCccCh--hHh
Confidence 334455555555555555432 2344555555555555555443 1 2222 5555555555555554443 233
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccc
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITL 166 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~ 166 (466)
.. +++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+. .++.+++|+.|+ +.|.+++. .+
T Consensus 106 ~~--l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~----~~--- 174 (272)
T 3rfs_A 106 DK--LTNLKELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQSL----PE--- 174 (272)
T ss_dssp TT--CTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCC----CT---
T ss_pred cC--CcCCCEEECCCCcCCccCHHHhccC-CCCCEEECCCCccCccCHH-HhccCccCCEEECCCCCcCcc----CH---
Confidence 44 5555555555555554444444555 5555555555555533333 444555555555 55544443 12
Q ss_pred cCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCC
Q 047429 167 VRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 167 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+..+++|++|++++|.+++++ ..+..+++|++|++++|.+.
T Consensus 175 ----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 175 ----GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 23444555555555555555532 23444555555555555444
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.5e-24 Score=211.01 Aligned_cols=110 Identities=21% Similarity=0.172 Sum_probs=73.0
Q ss_pred EEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc--cccccCCCC-CccEEEcCCCCCCchhhhhhhcc--
Q 047429 42 SLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS--HSLVNSSSS-SLTHLHLSLCGLSNSAYHCLSHI-- 116 (466)
Q Consensus 42 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-- 116 (466)
.+++++|.+++. ...+....++|++|++++|.+++..... ..+.. ++ +|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSNP---VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCCH---HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchHH---HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 467888888876 4556653555999999999887765411 13444 66 89999999998887666666552
Q ss_pred --cCCCcEEEccCCccccCCChhhhhcC-----Ccccccc-cccccccc
Q 047429 117 --SKSLVYLDLSNNQLQGPTPDYAFRNM-----TSLASLT-SLNYITGI 157 (466)
Q Consensus 117 --~~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~-~~n~l~~~ 157 (466)
.++|++|++++|.+++..+. .+... ++|+.|+ +.|.+++.
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred ccCCCccEEECcCCcCChHHHH-HHHHHHHhCCCCccEEECcCCcCCcH
Confidence 26788999999988865554 43332 4555555 55554443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2e-23 Score=194.77 Aligned_cols=229 Identities=24% Similarity=0.281 Sum_probs=153.3
Q ss_pred cCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCC
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSS 92 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l 92 (466)
.++..+++..+.+.+.. ....+++|+.|++++|.++... .+.. +++|++|++++|.+++. ..+.. +
T Consensus 19 ~~l~~l~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~~----~l~~-l~~L~~L~l~~n~l~~~----~~l~~--l 84 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQ----GIQY-LPNVRYLALGGNKLHDI----SALKE--L 84 (272)
T ss_dssp HHHHHHHHTCSCTTSEE---CHHHHTTCCEEECTTSCCCCCT----TGGG-CTTCCEEECTTSCCCCC----GGGTT--C
T ss_pred HHHHHHHhcCccccccc---ccccccceeeeeeCCCCccccc----cccc-CCCCcEEECCCCCCCCc----hhhcC--C
Confidence 34445555555555432 2445666667777776665542 2334 66677777776666653 23444 6
Q ss_pred CCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCcccc
Q 047429 93 SSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..+ ..
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-----------------------------------~~ 128 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPD-----------------------------------GV 128 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCT-----------------------------------TT
T ss_pred CCCCEEECCCCccCccChhHhcCC-cCCCEEECCCCcCCccCH-----------------------------------HH
Confidence 666666666666665555556666 666666666666653222 34
Q ss_pred ccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
+..+++|++|++++|.+++++. .+..+++|++|++++|++++..+..+..+ ++|++|++++|.+++..
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~L~~N~l~~~~----- 197 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL------TQLKDLRLYQNQLKSVP----- 197 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCSCCC-----
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC------ccCCEEECCCCcCCccC-----
Confidence 5667788888888888887543 56778888888888888887666655544 57888888888887322
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
|..+..+++|++|++++|.+ . +.++.|++|+++.|.++|.+|.+++.+...
T Consensus 198 -----~~~~~~l~~L~~L~l~~N~~-------~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 198 -----DGVFDRLTSLQYIWLHDNPW-------D-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp -----TTTTTTCTTCCEEECCSSCB-------C-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred -----HHHHhCCcCCCEEEccCCCc-------c-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 23477888999999998644 2 446778999999999999999888877655
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.9e-24 Score=222.92 Aligned_cols=188 Identities=14% Similarity=0.114 Sum_probs=120.5
Q ss_pred CCcCCcEEeCCCccccccchHHHhhc-CCC-CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc--ccc
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSY-HNK-LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR--SHS 86 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~-l~~-L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~ 86 (466)
.+++|++|+|++|.+++..+ ..+.. ++. |++|+|++|.-..... ...+...+++|++|+|++|.+++.... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~~L~L~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDL-DRLAKARADDLETLKLDKCSGFTTDG-LLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHH-HHHHHHHGGGCCEEEEESCEEEEHHH-HHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHH-HHHHHhccccCcEEECcCCCCcCHHH-HHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 67889999999988877666 55555 344 9999998886211111 223333389999999999987655321 012
Q ss_pred cccCCCCCccEEEcCCCCCC----chhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccC
Q 047429 87 LVNSSSSSLTHLHLSLCGLS----NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCS 161 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~ 161 (466)
... +++|++|++++|.++ ...+..+..+ ++|++|++++|.+.+ .+. .+.++++|++|. +....... ...
T Consensus 188 ~~~--~~~L~~L~L~~n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~-~~~ 261 (592)
T 3ogk_B 188 AQH--NTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIG-MPE 261 (592)
T ss_dssp HHH--CCCCCEEECTTCCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTT-CTT
T ss_pred Hhc--CCCccEEEeeccCCCccCHHHHHHHHhhC-CCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccc-hHH
Confidence 344 789999999999887 2344455667 899999999998875 555 788889999888 43211100 000
Q ss_pred CCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 162 LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 162 l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
.. ..+..+++|+.|+++++....+|..+..+++|++|++++|.++
T Consensus 262 ~~-------~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 262 KY-------MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp SS-------SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred HH-------HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCC
Confidence 11 3445555666666665544445555555666666666666544
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.3e-22 Score=186.63 Aligned_cols=45 Identities=29% Similarity=0.270 Sum_probs=28.0
Q ss_pred cCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccch
Q 047429 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPE 218 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 218 (466)
..+++|++|++++|.++.+|..+..+++|++|++++|++++..+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~ 118 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSS
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHH
Confidence 345566777777777666666666666666666666666544433
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=193.53 Aligned_cols=234 Identities=18% Similarity=0.103 Sum_probs=171.4
Q ss_pred CCCCcEEEccCCCCCCcc-chHHHHhcCCCCCCEEEcCCCCCCCCCcccccc--ccCCCCCccEEEcCCCCCCchhh---
Q 047429 37 HNKLTSLSLQGLDLREAT-DWLQVVITGLPSLRELDLSSSAPPKINYRSHSL--VNSSSSSLTHLHLSLCGLSNSAY--- 110 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~--- 110 (466)
...++.+.+.++.++... ........ +++|++|++++|.+.+..+ ..+ .. +++|++|++++|.+++..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~--~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMP--PLPLEAT--GLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCC--CCSSSCC--CBCCSSCEEESCCCSSTTSSHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchh--hhhhhcc--CCCCCEEEeecccccchhhhhH
Confidence 345788888888775431 00112333 5779999999999887766 344 55 8899999999999986433
Q ss_pred -hhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCc
Q 047429 111 -HCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ 188 (466)
Q Consensus 111 -~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~ 188 (466)
..+..+ ++|++|++++|.+.+..+. .++.+++|++|+ +.|.+.+...-..+ ..+..+++|++|++++|.
T Consensus 138 ~~~~~~~-~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 138 ELQQWLK-PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAA-------LCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp HHHTTBC-SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTT-------SCTTSSCCCCSCBCCSSC
T ss_pred HHHhhhc-cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHH-------HhhhcCCCCCEEECCCCC
Confidence 344566 8999999999999876666 888899999999 88876542100011 234678899999999999
Q ss_pred CCCCCc----ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCC
Q 047429 189 ITGIPK----SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPS 264 (466)
Q Consensus 189 l~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~ 264 (466)
++.++. .+..+++|++|++++|.+++..|..+... ..+++|++|++++|+++ .+|..+. +
T Consensus 209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~~~~~L~~L~Ls~N~l~-----------~lp~~~~--~ 272 (310)
T 4glp_A 209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC---MWSSALNSLNLSFAGLE-----------QVPKGLP--A 272 (310)
T ss_dssp CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC---CCCTTCCCEECCSSCCC-----------SCCSCCC--S
T ss_pred CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc---cCcCcCCEEECCCCCCC-----------chhhhhc--C
Confidence 987544 25678999999999999988766554333 12357999999999998 5566554 7
Q ss_pred CCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 265 SLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 265 ~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
+|++|++++|++ + .+|. +..+++|+.|++++|+++.
T Consensus 273 ~L~~L~Ls~N~l-------~-~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 273 KLRVLDLSSNRL-------N-RAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECCSCCC-------C-SCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCEEECCCCcC-------C-CCch-hhhCCCccEEECcCCCCCC
Confidence 899999999665 3 3333 6788999999999999874
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.4e-21 Score=180.44 Aligned_cols=201 Identities=23% Similarity=0.293 Sum_probs=103.3
Q ss_pred CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCC
Q 047429 40 LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119 (466)
Q Consensus 40 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 119 (466)
.+.+++++++++.+ |..+ .+++++|++++|.++..++ ..+.. +++|++|++++|.++...+..|..+ ++
T Consensus 18 ~~~l~~~~~~l~~i---p~~~---~~~l~~L~l~~n~l~~~~~--~~~~~--l~~L~~L~l~~n~l~~i~~~~~~~l-~~ 86 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI---PSNI---PADTKKLDLQSNKLSSLPS--KAFHR--LTKLRLLYLNDNKLQTLPAGIFKEL-KN 86 (270)
T ss_dssp TTEEECTTSCCSSC---CSCC---CTTCSEEECCSSCCSCCCT--TSSSS--CTTCCEEECCSSCCSCCCTTTTSSC-TT
T ss_pred CCEEEccCCCCCcc---CCCC---CCCCCEEECcCCCCCeeCH--HHhcC--CCCCCEEECCCCccCeeChhhhcCC-CC
Confidence 44555555555544 2111 1345555555555554443 33444 5555555555555554444444444 55
Q ss_pred CcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCC
Q 047429 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGD 198 (466)
Q Consensus 120 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~ 198 (466)
|++|++++|.+.+..+ ..+..+++|++|++++|.++.++ ..|..
T Consensus 87 L~~L~l~~n~l~~~~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 87 LETLWVTDNKLQALPI-----------------------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp CCEEECCSSCCCCCCT-----------------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred CCEEECCCCcCCcCCH-----------------------------------hHcccccCCCEEECCCCccCeeCHHHhCc
Confidence 5555555555543222 23344555555555555555533 34455
Q ss_pred CCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeee
Q 047429 199 MCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLW 277 (466)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~ 277 (466)
+++|++|++++|.+++..+..+..+ ++|+.|++++|.++ .+|. .|..+++|++|++++|.+
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l- 193 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKL------TSLKELRLYNNQLK-----------RVPEGAFDKLTELKTLKLDNNQL- 193 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCC-
T ss_pred CcCCCEEECCCCcCCccCHhHccCC------cccceeEecCCcCc-----------EeChhHhccCCCcCEEECCCCcC-
Confidence 5556666666665554444433333 45666666666555 2222 355566666666666665
Q ss_pred eecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 278 LRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 278 l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
.. ..+..+..+++|+.|++++|++...
T Consensus 194 ---~~---~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 194 ---KR---VPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp ---SC---CCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ---Cc---CCHHHhccccCCCEEEecCCCeeCC
Confidence 21 2233456667777777777776543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=5.4e-21 Score=178.00 Aligned_cols=197 Identities=23% Similarity=0.317 Sum_probs=151.2
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
+.++++++++.++.++. .+ .+++++|++++|.++...+..|..+ ++|++|++++|.++. ++.
T Consensus 17 ~~~~l~~~~~~l~~ip~---~~----~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~-i~~--------- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS---NI----PADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQT-LPA--------- 78 (270)
T ss_dssp TTTEEECTTSCCSSCCS---CC----CTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSC-CCT---------
T ss_pred CCCEEEccCCCCCccCC---CC----CCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCe-eCh---------
Confidence 45667777776665543 11 2456677777776666555566666 667777777666652 221
Q ss_pred cccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 146 ASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 146 ~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
..|..+++|++|++++|.++.++ ..+..+++|++|++++|.+++..+..+..+
T Consensus 79 -------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 132 (270)
T 2o6q_A 79 -------------------------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL- 132 (270)
T ss_dssp -------------------------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC-
T ss_pred -------------------------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC-
Confidence 34677889999999999999965 467899999999999999998887776655
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
++|++|++++|.++ .+|. .+..+++|++|++++|.+ ++..+..+..+++|++|+++
T Consensus 133 -----~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 133 -----TKLTYLSLGYNELQ-----------SLPKGVFDKLTSLKELRLYNNQL-------KRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp -----TTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSCC-------SCCCTTTTTTCTTCCEEECC
T ss_pred -----cCCCEEECCCCcCC-----------ccCHhHccCCcccceeEecCCcC-------cEeChhHhccCCCcCEEECC
Confidence 68999999999998 4444 478899999999999544 55555678999999999999
Q ss_pred CCCCCCCchhhhhhhhhhhhcCCCCc
Q 047429 304 HNNISGMVPTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~~~n~ 329 (466)
+|.+++..+..|..+++|+.++++.+
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCC
Confidence 99999888888999999999885554
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.3e-21 Score=184.01 Aligned_cols=108 Identities=21% Similarity=0.132 Sum_probs=44.0
Q ss_pred ccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
+++++++++++++++.++.... .+ .++++.|+|++|.++... +..+.. +++|++|++++|.++..+. ..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~--~~--~~~l~~L~L~~N~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~----~~ 74 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP--DL--PKDTTILHLSENLLYTFS--LATLMP-YTRLTQLNLDRAELTKLQV----DG 74 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS--CC--CTTCCEEECTTSCCSEEE--GGGGTT-CTTCCEEECTTSCCCEEEC----CS
T ss_pred ccccCCccEEECCCCCCCcCCC--CC--CCCCCEEEcCCCcCCccC--HHHhhc-CCCCCEEECCCCccCcccC----CC
Confidence 3444455555555554443211 11 134444555555444431 112222 4444444444444443322 12
Q ss_pred cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
. +++|++|++++|.++ .+|..+..+ ++|++|++++|+++
T Consensus 75 ~--l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~ 113 (290)
T 1p9a_G 75 T--LPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLT 113 (290)
T ss_dssp C--CTTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCC
T ss_pred C--CCcCCEEECCCCcCC-cCchhhccC-CCCCEEECCCCcCc
Confidence 2 444444444444443 223333333 44444444444443
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.3e-23 Score=202.53 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=153.1
Q ss_pred HHhhcCCCCcEEEccCCCCCCccchHHH---HhcCCCCCCEEEcCCCCCCCCCccc-cc-------cccCCCCCccEEEc
Q 047429 32 QWLSYHNKLTSLSLQGLDLREATDWLQV---VITGLPSLRELDLSSSAPPKINYRS-HS-------LVNSSSSSLTHLHL 100 (466)
Q Consensus 32 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~-~~-------~~~~~l~~L~~L~L 100 (466)
..+..+++|++|+|++|.++... +.. ....+++|++|+|++|.+..+.... .. +.. +++|++|++
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~--~~~L~~L~L 101 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK--CPKLHTVRL 101 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT--CTTCCEEEC
T ss_pred HHHhcCCCccEEECCCCCCCHHH--HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh--CCcccEEEC
Confidence 34555666666666666665431 111 1222666666666665444322100 11 133 566666666
Q ss_pred CCCCCCc----hhhhhhhcccCCCcEEEccCCccccCCChhhhh----cC---------Ccccccc-cccccccccccCC
Q 047429 101 SLCGLSN----SAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFR----NM---------TSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 101 s~n~l~~----~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~----~l---------~~L~~L~-~~n~l~~~~~~~l 162 (466)
++|.++. ..+..+..+ ++|++|+|++|.+....+. .+. .+ ++|+.|+ +.|.++......+
T Consensus 102 s~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 6666665 345555666 6677777776666533222 222 22 6666666 6666653221111
Q ss_pred CccccCccccccCCCccCEEecCCCcCCC------CCcccCCCCCcCEEEeeCCcCC----Cccchhhhhcccccccccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITG------IPKSFGDMCCLKTLKIHDNILT----AKLPELFLNFSAGCAKKSL 232 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~------~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~~~~~~L 232 (466)
. ..+..+++|++|++++|.++. ++..+..+++|++|+|++|.++ ..+|..+... ++|
T Consensus 180 ~-------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~------~~L 246 (386)
T 2ca6_A 180 A-------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW------PNL 246 (386)
T ss_dssp H-------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC------TTC
T ss_pred H-------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC------CCc
Confidence 1 355677888899999888873 3337778888999999998885 3344444333 578
Q ss_pred ceEecCCccccccCCCCcccccccCccc--CCCCCCcEEeCCCCeeeeecccc-cccCCCCC-CCCCCccEEEccCCCCC
Q 047429 233 QSFMLQNNMLSGSLPGVTELDGTFPKQF--CRPSSLVELDLESNQLWLRFNHI-NGSATPKL-CSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~l~~~lp~~~--~~l~~L~~L~L~~n~l~l~~n~~-~~~~~~~~-~~l~~L~~L~Ls~N~l~ 308 (466)
++|++++|.+++.... .+|..+ ..+++|++|+|++|.+ ... ...+|..+ .++++|++|++++|.++
T Consensus 247 ~~L~L~~n~i~~~~~~------~l~~~l~~~~~~~L~~L~L~~n~i----~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 247 RELGLNDCLLSARGAA------AVVDAFSKLENIGLQTLRLQYNEI----ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CEEECTTCCCCHHHHH------HHHHHHHTCSSCCCCEEECCSSCC----BHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CEEECCCCCCchhhHH------HHHHHHhhccCCCeEEEECcCCcC----CHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 9999999988743211 245555 3488999999999987 220 01345555 56899999999999999
Q ss_pred CCch
Q 047429 309 GMVP 312 (466)
Q Consensus 309 ~~~p 312 (466)
+..+
T Consensus 317 ~~~~ 320 (386)
T 2ca6_A 317 EEDD 320 (386)
T ss_dssp TTSH
T ss_pred cchh
Confidence 8774
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.7e-23 Score=203.97 Aligned_cols=256 Identities=18% Similarity=0.176 Sum_probs=185.1
Q ss_pred ccccCCcCCcEEeCCCccccccchH---HHhhcCCCCcEEEccCCCCCCcc-chHHHH------hcCCCCCCEEEcCCCC
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFD---QWLSYHNKLTSLSLQGLDLREAT-DWLQVV------ITGLPSLRELDLSSSA 76 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~------~~~l~~L~~L~Ls~n~ 76 (466)
..+..+++|++|+|++|.+....+. ..+..+++|++|+|++|.+..+. ..+..+ ...+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3566789999999999999876541 23668999999999998766441 113333 2348999999999999
Q ss_pred CCCCCcc--ccccccCCCCCccEEEcCCCCCCchhhhhhhccc------------CCCcEEEccCCcccc-CCCh--hhh
Q 047429 77 PPKINYR--SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHIS------------KSLVYLDLSNNQLQG-PTPD--YAF 139 (466)
Q Consensus 77 l~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~------------~~L~~L~Ls~n~l~~-~~~~--~~~ 139 (466)
++..... ...+.. +++|++|++++|.++...+..+...+ ++|++|++++|.+.. ..+. ..+
T Consensus 106 l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSK--HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCTTTHHHHHHHHHH--CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 9874221 135566 89999999999999765555544322 589999999999973 3331 156
Q ss_pred hcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCC-----CCCcccCCCCCcCEEEeeCCcCC
Q 047429 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQIT-----GIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 140 ~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+++|+.|+ +.|.++..+...+. +..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~------~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLL------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHH------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHH------HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 6889999999 99988743211111 026788999999999999995 27778899999999999999998
Q ss_pred CccchhhhhccccccccccceEecCCccccccCCCCcccccccCccc-CCCCCCcEEeCCCCee
Q 047429 214 AKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQF-CRPSSLVELDLESNQL 276 (466)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~-~~l~~L~~L~L~~n~l 276 (466)
+.....+...+.....++|++|++++|.+++.... .+|..+ .++++|++|++++|.+
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~------~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR------TLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH------HHHHHHHHHCTTCCEEECTTSBS
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH------HHHHHHHhcCCCceEEEccCCcC
Confidence 76443333322211126799999999999831000 256666 5689999999999655
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.9e-21 Score=182.48 Aligned_cols=190 Identities=25% Similarity=0.347 Sum_probs=106.0
Q ss_pred cCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhc
Q 047429 36 YHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSH 115 (466)
Q Consensus 36 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 115 (466)
.+++|++|++++|.++.+ + .+.. +++|++|++++|.+++..+ +.. +++|++|++++|.+++. ..+..
T Consensus 39 ~l~~L~~L~l~~~~i~~l---~-~~~~-l~~L~~L~L~~n~i~~~~~----~~~--l~~L~~L~L~~n~l~~~--~~~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI---E-GVQY-LNNLIGLELKDNQITDLAP----LKN--LTKITELELSGNPLKNV--SAIAG 105 (308)
T ss_dssp HHHTCCEEECTTSCCCCC---T-TGGG-CTTCCEEECCSSCCCCCGG----GTT--CCSCCEEECCSCCCSCC--GGGTT
T ss_pred HcCCcCEEEeeCCCccCc---h-hhhc-cCCCCEEEccCCcCCCChh----Hcc--CCCCCEEEccCCcCCCc--hhhcC
Confidence 345555555555555544 2 2333 5555555555555554432 333 55555555555555542 23444
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK 194 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 194 (466)
+ ++|++|++++|.+.+ .+ .+..+++|+.|+ +.|.+++. ..+..+++|++|++++|.+++++.
T Consensus 106 l-~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 106 L-QSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNI-------------SPLAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp C-TTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG
T ss_pred C-CCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcC-------------ccccCCCCccEEEccCCcCCCChh
Confidence 4 555555555555543 22 345555555555 55555443 235556667777777776666544
Q ss_pred ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCC
Q 047429 195 SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESN 274 (466)
Q Consensus 195 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n 274 (466)
+..+++|++|++++|.+++..+ +..+ ++|+.|++++|+++ .++ .+..+++|+.|++++|
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l------~~L~~L~L~~N~l~-----------~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASL------PNLIEVHLKNNQIS-----------DVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGC------TTCCEEECTTSCCC-----------BCG-GGTTCTTCCEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCC------CCCCEEEccCCccC-----------ccc-cccCCCCCCEEEccCC
Confidence 6666777777777777665443 2222 45777777777666 333 2566777777777777
Q ss_pred ee
Q 047429 275 QL 276 (466)
Q Consensus 275 ~l 276 (466)
.+
T Consensus 228 ~i 229 (308)
T 1h6u_A 228 TI 229 (308)
T ss_dssp EE
T ss_pred ee
Confidence 66
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6.2e-22 Score=188.26 Aligned_cols=227 Identities=19% Similarity=0.186 Sum_probs=165.1
Q ss_pred CCccEEEcCCCCCCchhhh---hhhcccCCCcEEEccCCccccCCChhhh--hcCCcccccc-cccccccccccCCCccc
Q 047429 93 SSLTHLHLSLCGLSNSAYH---CLSHISKSLVYLDLSNNQLQGPTPDYAF--RNMTSLASLT-SLNYITGISKCSLPITL 166 (466)
Q Consensus 93 ~~L~~L~Ls~n~l~~~~~~---~l~~l~~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~-~~n~l~~~~~~~l~~~~ 166 (466)
..++.+.+.++.++..... .+... ++|++|++++|.+.+..|. .+ ..+++|++|+ +.|.+++. .+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~----~~~~- 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATG----RSWL- 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSST----TSSH-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccch----hhhh-
Confidence 4577888888877643221 12234 6789999999988877777 65 7788888888 88887763 1100
Q ss_pred cCccccccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccc---hh-hhhccccccccccceEecCCcc
Q 047429 167 VRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLP---EL-FLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 167 ~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~-~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
....+..+++|++|++++|.+..+ +..+..+++|++|++++|++.+... .. +..+ ++|++|++++|+
T Consensus 137 --~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l------~~L~~L~Ls~N~ 208 (310)
T 4glp_A 137 --AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF------PAIQNLALRNTG 208 (310)
T ss_dssp --HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS------CCCCSCBCCSSC
T ss_pred --HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC------CCCCEEECCCCC
Confidence 002345788999999999999884 4688899999999999999864311 11 1122 579999999999
Q ss_pred ccccCCCCcccccccCc----ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCC---CCccEEEccCCCCCCCchhh
Q 047429 242 LSGSLPGVTELDGTFPK----QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS---PMLQVLDFSHNNISGMVPTC 314 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp~----~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~p~~ 314 (466)
++ .++. .+..+++|++|++++| .+++..|..+..+ ++|++|+|++|.++ .+|..
T Consensus 209 l~-----------~l~~~~~~l~~~l~~L~~L~Ls~N-------~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~ 269 (310)
T 4glp_A 209 ME-----------TPTGVCAALAAAGVQPHSLDLSHN-------SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG 269 (310)
T ss_dssp CC-----------CHHHHHHHHHHHTCCCSSEECTTS-------CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC
T ss_pred CC-----------chHHHHHHHHhcCCCCCEEECCCC-------CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh
Confidence 97 3332 2567899999999995 4455557777666 69999999999998 45543
Q ss_pred hhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCc
Q 047429 315 LNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIP 394 (466)
Q Consensus 315 ~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip 394 (466)
+. ++|++|||++|+++ .+|
T Consensus 270 ~~------------------------------------------------~~L~~L~Ls~N~l~-------------~~~ 288 (310)
T 4glp_A 270 LP------------------------------------------------AKLRVLDLSSNRLN-------------RAP 288 (310)
T ss_dssp CC------------------------------------------------SCCSCEECCSCCCC-------------SCC
T ss_pred hc------------------------------------------------CCCCEEECCCCcCC-------------CCc
Confidence 32 34489999999999 333
Q ss_pred ccccCCCCCCeeeccCCcCcc
Q 047429 395 RSFSQLSHLGVVNLSNNNFSG 415 (466)
Q Consensus 395 ~~l~~l~~L~~L~Ls~N~l~~ 415 (466)
. +..+++|+.|++++|+++.
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTSC
T ss_pred h-hhhCCCccEEECcCCCCCC
Confidence 3 5778999999999999973
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=6.5e-23 Score=212.70 Aligned_cols=337 Identities=11% Similarity=0.037 Sum_probs=203.6
Q ss_pred cCCcCCcEEeCCCccccccch---HHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
..+++|++|+|++|.+++... ...+..+++|++|++++|.++... .++..+.. +++|++|++++|.+.+.+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~l~--- 236 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN-CRSLVSVKVGDFEILELV--- 236 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH-CTTCCEEECSSCBGGGGH---
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh-CCCCcEEeccCccHHHHH---
Confidence 478999999999999876532 245678999999999999987431 22333344 899999999999877643
Q ss_pred cccccCCCCCccEEEcCCCCCC---chhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccccccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLS---NSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKC 160 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~ 160 (466)
..+.. +++|++|+++.+... ...+..+..+ ++|+.|+++++... ..+. .+..+++|++|+ +.|.++...
T Consensus 237 ~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~-- 309 (592)
T 3ogk_B 237 GFFKA--AANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETED-- 309 (592)
T ss_dssp HHHHH--CTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHH--
T ss_pred HHHhh--hhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHH--
Confidence 35566 788888888754322 1223345555 77788877775432 4454 666777788887 766654431
Q ss_pred CCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeC-----------CcCCCccchhhhhccccc
Q 047429 161 SLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHD-----------NILTAKLPELFLNFSAGC 227 (466)
Q Consensus 161 ~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~~~ 227 (466)
+. ..+..+++|++|+++ +.+.. ++.....+++|++|++++ +.+++.....+...
T Consensus 310 -~~-------~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~---- 376 (592)
T 3ogk_B 310 -HC-------TLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG---- 376 (592)
T ss_dssp -HH-------HHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH----
T ss_pred -HH-------HHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh----
Confidence 11 234667778888777 44433 444445667788888773 44443222211111
Q ss_pred cccccceEecCCccccccCCCCcccccccCcccC-CCCCCcEEeCCCCeeeeeccccccc-----CCCCCCCCCCccEEE
Q 047429 228 AKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFC-RPSSLVELDLESNQLWLRFNHINGS-----ATPKLCSSPMLQVLD 301 (466)
Q Consensus 228 ~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~-~l~~L~~L~L~~n~l~l~~n~~~~~-----~~~~~~~l~~L~~L~ 301 (466)
.++|++|+++.|.+++.. +..+. .+++|+.|+++++. ..|.+++. ++..+..+++|++|+
T Consensus 377 -~~~L~~L~l~~~~l~~~~----------~~~l~~~~~~L~~L~l~~~~---~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 377 -CQELEYMAVYVSDITNES----------LESIGTYLKNLCDFRLVLLD---REERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp -CTTCSEEEEEESCCCHHH----------HHHHHHHCCSCCEEEEEECS---CCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred -CccCeEEEeecCCccHHH----------HHHHHhhCCCCcEEEEeecC---CCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 146777777777766321 12232 36677777775211 01333331 222345577777777
Q ss_pred ccCCC--CCCCchhhhhh-hhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCC
Q 047429 302 FSHNN--ISGMVPTCLNN-LSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLS 378 (466)
Q Consensus 302 Ls~N~--l~~~~p~~~~~-l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 378 (466)
+++|. +++..+..+.. +++|+.|+++++-.. ..........+++|+.|+|++|.++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~---------------------~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES---------------------DEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS---------------------HHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCC---------------------HHHHHHHHhcCcccCeeeccCCCCc
Confidence 76543 55544444443 566666653322110 0001112345788899999999986
Q ss_pred cCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 379 GKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 379 ~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
+... +..+..+++|++|+|++|++++.
T Consensus 502 ~~~~-----------~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 502 ERAI-----------AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHH-----------HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHH-----------HHHHHhcCccCeeECcCCcCCHH
Confidence 4322 22345789999999999998753
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.5e-22 Score=193.19 Aligned_cols=200 Identities=20% Similarity=0.197 Sum_probs=124.7
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCC--CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCch-hhhhhhc
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGL--PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNS-AYHCLSH 115 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~ 115 (466)
.++.++++++.+.. ..+.. + ++++.|++++|.+.+..+ .+.. +++|++|++++|.+++. .+..+..
T Consensus 48 ~~~~l~l~~~~~~~-----~~~~~-~~~~~l~~L~l~~n~l~~~~~---~~~~--~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLHP-----DVTGR-LLSQGVIAFRCPRSFMDQPLA---EHFS--PFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCCH-----HHHHH-HHHTTCSEEECTTCEECSCCC---SCCC--CBCCCEEECTTCEECHHHHHHHHTT
T ss_pred hheeeccccccCCH-----HHHHh-hhhccceEEEcCCccccccch---hhcc--CCCCCEEEccCCCcCHHHHHHHHhh
Confidence 36777777776652 12233 3 677777777777766554 2334 67777777777777654 5566666
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCC-cCCC--C
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITG--I 192 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~--~ 192 (466)
+ ++|++|++++|.+.+..+. .+..+++|++|++++| .+++ +
T Consensus 117 ~-~~L~~L~L~~~~l~~~~~~-----------------------------------~l~~~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 117 C-SKLQNLSLEGLRLSDPIVN-----------------------------------TLAKNSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp B-CCCSEEECTTCBCCHHHHH-----------------------------------HHTTCTTCSEEECTTCBSCCHHHH
T ss_pred C-CCCCEEeCcCcccCHHHHH-----------------------------------HHhcCCCCCEEECCCCCCCCHHHH
Confidence 6 7777777777766543332 3444566677777766 4553 4
Q ss_pred CcccCCCCCcCEEEeeCC-cCCCc-cchhhhhcccccccc-ccceEecCCcc--ccccCCCCcccccccCcccCCCCCCc
Q 047429 193 PKSFGDMCCLKTLKIHDN-ILTAK-LPELFLNFSAGCAKK-SLQSFMLQNNM--LSGSLPGVTELDGTFPKQFCRPSSLV 267 (466)
Q Consensus 193 ~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~~~~~-~L~~L~L~~n~--l~~~~~~~~~l~~~lp~~~~~l~~L~ 267 (466)
+..+..+++|++|++++| .+++. .+..+... + +|++|++++|. +++. .+|..+..+++|+
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l------~~~L~~L~l~~~~~~~~~~---------~l~~~~~~~~~L~ 225 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV------SETITQLNLSGYRKNLQKS---------DLSTLVRRCPNLV 225 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS------CTTCCEEECCSCGGGSCHH---------HHHHHHHHCTTCS
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc------ccCCCEEEeCCCcccCCHH---------HHHHHHhhCCCCC
Confidence 455566677777777777 66543 23333333 4 67777777773 3311 3444566677788
Q ss_pred EEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC
Q 047429 268 ELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN 306 (466)
Q Consensus 268 ~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~ 306 (466)
+|++++|. .+++..+..+..+++|++|++++|.
T Consensus 226 ~L~l~~~~------~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 226 HLDLSDSV------MLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp EEECTTCT------TCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred EEeCCCCC------cCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 88887743 1444556667777888888888875
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=7.2e-23 Score=212.43 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=163.2
Q ss_pred cCCcCCcEEeCCCccccccchHHHhh-cCCCCcEEEccCC-CCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccccc
Q 047429 10 ISLEDLQSINIGLNAIRVRKFDQWLS-YHNKLTSLSLQGL-DLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSL 87 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 87 (466)
..+++|++|++++|.+++..+ ..+. .+++|++|+|++| .++... ...+...+++|++|++++|.+++... ..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~--l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDG--LAAIAATCRNLKELDLRESDVDDVSG--HWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHH--HHHHHHHCTTCCEEECTTCEEECCCG--GGG
T ss_pred HhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHH--HHHHHHhCCCCCEEeCcCCccCCcch--HHH
Confidence 467889999999998887766 5554 6899999999998 444321 33444338999999999998776543 122
Q ss_pred c--cCCCCCccEEEcCCCC--CCchhhh-hhhcccCCCcEEEccCC-ccccCCChhhhhcCCcccccc-cccc-------
Q 047429 88 V--NSSSSSLTHLHLSLCG--LSNSAYH-CLSHISKSLVYLDLSNN-QLQGPTPDYAFRNMTSLASLT-SLNY------- 153 (466)
Q Consensus 88 ~--~~~l~~L~~L~Ls~n~--l~~~~~~-~l~~l~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~-~~n~------- 153 (466)
. ...+++|++|++++|. +...... .+..+ ++|++|++++| .+.+ .+. .+..+++|+.|. ..+.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-PNLKSLKLNRAVPLEK-LAT-LLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC-TTCCEEECCTTSCHHH-HHH-HHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC-CCCcEEecCCCCcHHH-HHH-HHhcCCcceEcccccccCccchhh
Confidence 1 1126789999999986 4322222 23455 88999999988 3332 444 666777777776 3321
Q ss_pred -------------------cccccccCCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeCCcC
Q 047429 154 -------------------ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHDNIL 212 (466)
Q Consensus 154 -------------------l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~n~l 212 (466)
+.......++ ..+..+++|++|++++|.++. ++..+..+++|++|++++| +
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~-------~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~ 325 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLP-------AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-I 325 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGG-------GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-G
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHH-------HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-c
Confidence 0011000111 233356788888888888665 3334567788888888877 3
Q ss_pred CCccchhhhhccccccccccceEecCC---------ccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccc
Q 047429 213 TAKLPELFLNFSAGCAKKSLQSFMLQN---------NMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHI 283 (466)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~L~~---------n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~ 283 (466)
+......+... .++|++|++++ +.+++. .+......+++|++|++..| .+
T Consensus 326 ~~~~l~~l~~~-----~~~L~~L~L~~~~~~g~~~~~~l~~~---------~l~~l~~~~~~L~~L~~~~~-------~l 384 (594)
T 2p1m_B 326 EDAGLEVLAST-----CKDLRELRVFPSEPFVMEPNVALTEQ---------GLVSVSMGCPKLESVLYFCR-------QM 384 (594)
T ss_dssp HHHHHHHHHHH-----CTTCCEEEEECSCTTCSSCSSCCCHH---------HHHHHHHHCTTCCEEEEEES-------CC
T ss_pred CHHHHHHHHHh-----CCCCCEEEEecCcccccccCCCCCHH---------HHHHHHHhchhHHHHHHhcC-------Cc
Confidence 32111111111 14688887733 333321 11111223567777766553 33
Q ss_pred cccCCCCCC-CCCCccEEEcc--C----CCCCCCc-----hhhhhhhhhhhhcCCCC
Q 047429 284 NGSATPKLC-SSPMLQVLDFS--H----NNISGMV-----PTCLNNLSAMVQNGSSN 328 (466)
Q Consensus 284 ~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~-----p~~~~~l~~L~~l~~~n 328 (466)
++..+..+. .+++|+.|+++ + +.+++.. +..+..+++|+.|++++
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 333333332 46677777777 3 4454221 12245556666666543
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.5e-22 Score=192.16 Aligned_cols=223 Identities=18% Similarity=0.165 Sum_probs=156.6
Q ss_pred cCCcEEeCCCccccccchHHHhhcC--CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCC-Ccccccccc
Q 047429 13 EDLQSINIGLNAIRVRKFDQWLSYH--NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKI-NYRSHSLVN 89 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~ 89 (466)
..++.+|++++.+.. ..+..+ ++++.|++++|.+.+. +..++. +++|++|++++|.++.. .+ ..+..
T Consensus 47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~---~~~~~~-~~~L~~L~L~~~~l~~~~~~--~~~~~ 116 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQP---LAEHFS-PFRVQHMDLSNSVIEVSTLH--GILSQ 116 (336)
T ss_dssp TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSC---CCSCCC-CBCCCEEECTTCEECHHHHH--HHHTT
T ss_pred hhheeeccccccCCH----HHHHhhhhccceEEEcCCcccccc---chhhcc-CCCCCEEEccCCCcCHHHHH--HHHhh
Confidence 348899999998873 456666 8999999999999887 334555 89999999999987653 22 34556
Q ss_pred CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCC-ccccC-CChhhhhcCCcccccccccccccccccCCCcccc
Q 047429 90 SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNN-QLQGP-TPDYAFRNMTSLASLTSLNYITGISKCSLPITLV 167 (466)
Q Consensus 90 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n-~l~~~-~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~ 167 (466)
+++|++|++++|.+++..+..+..+ ++|++|++++| .+++. .+
T Consensus 117 --~~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~-------------------------------- 161 (336)
T 2ast_B 117 --CSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQ-------------------------------- 161 (336)
T ss_dssp --BCCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHH--------------------------------
T ss_pred --CCCCCEEeCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHH--------------------------------
Confidence 8999999999999998888889988 99999999999 56532 12
Q ss_pred CccccccCCCccCEEecCCC-cCCC--CCcccCCCC-CcCEEEeeCC--cCC-CccchhhhhccccccccccceEecCCc
Q 047429 168 RPKYAFSNVTSLMDLDLSKN-QITG--IPKSFGDMC-CLKTLKIHDN--ILT-AKLPELFLNFSAGCAKKSLQSFMLQNN 240 (466)
Q Consensus 168 ~~~~~l~~l~~L~~L~Ls~n-~l~~--~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~~~~~~~~~~L~~L~L~~n 240 (466)
..+..+++|++|++++| .+++ ++..+..++ +|++|++++| .++ +..+..+... ++|+.|++++|
T Consensus 162 ---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~------~~L~~L~l~~~ 232 (336)
T 2ast_B 162 ---TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC------PNLVHLDLSDS 232 (336)
T ss_dssp ---HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC------TTCSEEECTTC
T ss_pred ---HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC------CCCCEEeCCCC
Confidence 22344566777777777 6665 455566677 7777777777 343 2233333333 56777777777
Q ss_pred c-ccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 241 M-LSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 241 ~-l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
. +++ ..+..+..+++|++|++++|. .+.......+..+++|++|++++|
T Consensus 233 ~~l~~----------~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 233 VMLKN----------DCFQEFFQLNYLQHLSLSRCY------DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCG----------GGGGGGGGCTTCCEEECTTCT------TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcCCH----------HHHHHHhCCCCCCEeeCCCCC------CCCHHHHHHHhcCCCCCEEeccCc
Confidence 7 442 223456677888888888752 222222235677888888888888
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.4e-20 Score=178.56 Aligned_cols=208 Identities=20% Similarity=0.323 Sum_probs=163.9
Q ss_pred EEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcE
Q 047429 43 LSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVY 122 (466)
Q Consensus 43 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~ 122 (466)
+.+..+.+.+.. .... +++|++|++++|.++..+ .+.. +++|++|++++|.+++..+ +..+ ++|++
T Consensus 24 ~~l~~~~~~~~~----~~~~-l~~L~~L~l~~~~i~~l~----~~~~--l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~ 89 (308)
T 1h6u_A 24 IAAGKSNVTDTV----TQAD-LDGITTLSAFGTGVTTIE----GVQY--LNNLIGLELKDNQITDLAP--LKNL-TKITE 89 (308)
T ss_dssp HHTTCSSTTSEE----CHHH-HHTCCEEECTTSCCCCCT----TGGG--CTTCCEEECCSSCCCCCGG--GTTC-CSCCE
T ss_pred HHhCCCCcCcee----cHHH-cCCcCEEEeeCCCccCch----hhhc--cCCCCEEEccCCcCCCChh--HccC-CCCCE
Confidence 345566665542 2234 789999999999988763 3556 8999999999999987655 8888 99999
Q ss_pred EEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCC
Q 047429 123 LDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCC 201 (466)
Q Consensus 123 L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 201 (466)
|++++|.+.+. . .+..+++|+.|+ +.|.+++. ..+..+++|++|++++|.+++++. +..+++
T Consensus 90 L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 152 (308)
T 1h6u_A 90 LELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITDV-------------TPLAGLSNLQVLYLDLNQITNISP-LAGLTN 152 (308)
T ss_dssp EECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred EEccCCcCCCc--h-hhcCCCCCCEEECCCCCCCCc-------------hhhcCCCCCCEEECCCCccCcCcc-ccCCCC
Confidence 99999998853 3 688899999999 88888774 357888999999999999988765 788899
Q ss_pred cCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecc
Q 047429 202 LKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFN 281 (466)
Q Consensus 202 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n 281 (466)
|++|++++|.+++..+ +..+ ++|+.|++++|.++ .++. +..+++|++|++++|++
T Consensus 153 L~~L~l~~n~l~~~~~--l~~l------~~L~~L~l~~n~l~-----------~~~~-l~~l~~L~~L~L~~N~l----- 207 (308)
T 1h6u_A 153 LQYLSIGNAQVSDLTP--LANL------SKLTTLKADDNKIS-----------DISP-LASLPNLIEVHLKNNQI----- 207 (308)
T ss_dssp CCEEECCSSCCCCCGG--GTTC------TTCCEEECCSSCCC-----------CCGG-GGGCTTCCEEECTTSCC-----
T ss_pred ccEEEccCCcCCCChh--hcCC------CCCCEEECCCCccC-----------cChh-hcCCCCCCEEEccCCcc-----
Confidence 9999999999886544 3333 57999999999988 4443 77888999999999665
Q ss_pred cccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 282 HINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 282 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
+ .++ .+..+++|++|++++|.+++.
T Consensus 208 --~-~~~-~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 208 --S-DVS-PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp --C-BCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred --C-ccc-cccCCCCCCEEEccCCeeecC
Confidence 3 233 378889999999999998753
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=8.8e-21 Score=173.27 Aligned_cols=184 Identities=17% Similarity=0.214 Sum_probs=106.2
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCC-CCchhhhhhhcccCCCcEEEccC-CccccCCChhhhhcCC
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCG-LSNSAYHCLSHISKSLVYLDLSN-NQLQGPTPDYAFRNMT 143 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~~L~~L~Ls~-n~l~~~~~~~~~~~l~ 143 (466)
+|++|++++|.++.+++ ..+.. +++|++|++++|. ++...+..|..+ ++|++|++++ |.+++..+
T Consensus 32 ~l~~L~l~~n~l~~i~~--~~~~~--l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~-------- 98 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS--HAFSN--LPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDP-------- 98 (239)
T ss_dssp TCCEEEEESCCCSEECT--TTTTT--CTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECT--------
T ss_pred cccEEEEeCCcceEECH--HHccC--CCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCH--------
Confidence 55555555555554443 33444 5555555555554 444444444444 5555555554 54442222
Q ss_pred cccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcC---EEEeeCC-cCCCccchh
Q 047429 144 SLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLK---TLKIHDN-ILTAKLPEL 219 (466)
Q Consensus 144 ~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~ 219 (466)
..|..+++|++|++++|.++++|. +..+++|+ +|++++| .+++..+..
T Consensus 99 ---------------------------~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~ 150 (239)
T 2xwt_C 99 ---------------------------DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNA 150 (239)
T ss_dssp ---------------------------TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTT
T ss_pred ---------------------------HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCccc
Confidence 345566677777777777776665 66666666 7777777 666555554
Q ss_pred hhhccccccccccc-eEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCC-CCc
Q 047429 220 FLNFSAGCAKKSLQ-SFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSS-PML 297 (466)
Q Consensus 220 ~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l-~~L 297 (466)
|..+ ++|+ .|++++|.++ .+|......++|++|++++|+ .+++..+..|..+ ++|
T Consensus 151 ~~~l------~~L~~~L~l~~n~l~-----------~i~~~~~~~~~L~~L~L~~n~------~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 151 FQGL------CNETLTLKLYNNGFT-----------SVQGYAFNGTKLDAVYLNKNK------YLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp TTTT------BSSEEEEECCSCCCC-----------EECTTTTTTCEEEEEECTTCT------TCCEECTTTTTTCSBCC
T ss_pred ccch------hcceeEEEcCCCCCc-----------ccCHhhcCCCCCCEEEcCCCC------CcccCCHHHhhccccCC
Confidence 5444 4577 7777777776 444433333677777777742 1333445566677 777
Q ss_pred cEEEccCCCCCCCchh
Q 047429 298 QVLDFSHNNISGMVPT 313 (466)
Q Consensus 298 ~~L~Ls~N~l~~~~p~ 313 (466)
++|++++|++++..+.
T Consensus 208 ~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 208 SLLDVSQTSVTALPSK 223 (239)
T ss_dssp SEEECTTCCCCCCCCT
T ss_pred cEEECCCCccccCChh
Confidence 7777777777754443
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.1e-20 Score=182.76 Aligned_cols=217 Identities=20% Similarity=0.204 Sum_probs=151.6
Q ss_pred CEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccc
Q 047429 68 RELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLAS 147 (466)
Q Consensus 68 ~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 147 (466)
++++.+++.++.++. .+ .+++++|+|++|+|+.+.+..|.++ ++|++|+|++|.+.+.++...|.+++++.+
T Consensus 12 ~~v~C~~~~Lt~iP~---~l----~~~l~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS---DL----PRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCT---TC----CTTCSEEEEESCCCSEECTTSSTTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCc---Cc----CCCCCEEEccCCcCCCcCHHHHcCC-CCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 456667777766554 11 3467777777777776655667777 777888887777755555436677777665
Q ss_pred cc--cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeC-CcCCCccchhhhhc
Q 047429 148 LT--SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHD-NILTAKLPELFLNF 223 (466)
Q Consensus 148 L~--~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~ 223 (466)
+. ..|.++.. .+ ..|..+++|++|++++|.+..++. .+....++..|++.+ +.+....+..|...
T Consensus 84 ~l~~~~N~l~~l----~~-------~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 84 IRIEKANNLLYI----NP-------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp EEEEEETTCCEE----CT-------TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred hhcccCCccccc----Cc-------hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 44 56666665 33 578888999999999999988654 555667788888866 46665554444333
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEcc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFS 303 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls 303 (466)
+..++.|++++|+++ .+|.......+|+.+++.++ |.++...+..|..+++|++||++
T Consensus 153 -----~~~l~~L~L~~N~i~-----------~i~~~~f~~~~L~~l~l~~~------n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 153 -----SFESVILWLNKNGIQ-----------EIHNSAFNGTQLDELNLSDN------NNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp -----BSSCEEEECCSSCCC-----------EECTTSSTTEEEEEEECTTC------TTCCCCCTTTTTTEECCSEEECT
T ss_pred -----chhhhhhcccccccc-----------CCChhhccccchhHHhhccC------CcccCCCHHHhccCcccchhhcC
Confidence 135888999999998 66666666778999999753 44444444578899999999999
Q ss_pred CCCCCCCchhhhhhhhhhhhcC
Q 047429 304 HNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 304 ~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
+|+++...+..|.++++|+.++
T Consensus 211 ~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 211 RTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp TSCCCCCCSSSCTTCCEEECTT
T ss_pred CCCcCccChhhhccchHhhhcc
Confidence 9999977666677766665444
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=5.4e-20 Score=167.98 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=144.0
Q ss_pred CCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccCCCCCccEEEcCC-CCCCchhhhhhhc
Q 047429 38 NKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNSSSSSLTHLHLSL-CGLSNSAYHCLSH 115 (466)
Q Consensus 38 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~ 115 (466)
.+|++|++++|+++.+ +...+..+++|++|++++|. ++.+++ ..+.. +++|++|++++ |.++...+..|..
T Consensus 31 ~~l~~L~l~~n~l~~i---~~~~~~~l~~L~~L~l~~n~~l~~i~~--~~f~~--l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI---PSHAFSNLPNISRIYVSIDVTLQQLES--HSFYN--LSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEE---CTTTTTTCTTCCEEEEECCSSCCEECT--TTEES--CTTCCEEEEEEETTCCEECTTSEEC
T ss_pred CcccEEEEeCCcceEE---CHHHccCCCCCcEEeCCCCCCcceeCH--hHcCC--CcCCcEEECCCCCCeeEcCHHHhCC
Confidence 4899999999999987 43344449999999999997 887776 56777 99999999998 9999887788888
Q ss_pred ccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccCCCccCEEecCCC-cCCCCCc
Q 047429 116 ISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKN-QITGIPK 194 (466)
Q Consensus 116 l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~ 194 (466)
+ ++|++|++++|.+++ +|. +..+++ +..|++|++++| .++.++.
T Consensus 104 l-~~L~~L~l~~n~l~~-lp~--~~~l~~-------------------------------L~~L~~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 104 L-PLLKFLGIFNTGLKM-FPD--LTKVYS-------------------------------TDIFFILEITDNPYMTSIPV 148 (239)
T ss_dssp C-TTCCEEEEEEECCCS-CCC--CTTCCB-------------------------------CCSEEEEEEESCTTCCEECT
T ss_pred C-CCCCEEeCCCCCCcc-ccc--cccccc-------------------------------cccccEEECCCCcchhhcCc
Confidence 8 999999999999874 332 222222 122337788887 7777543
Q ss_pred -ccCCCCCcC-EEEeeCCcCCCccchhhhhccccccccccceEecCCcc-ccccCCCCcccccccC-cccCCC-CCCcEE
Q 047429 195 -SFGDMCCLK-TLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNM-LSGSLPGVTELDGTFP-KQFCRP-SSLVEL 269 (466)
Q Consensus 195 -~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~~lp-~~~~~l-~~L~~L 269 (466)
.|..+++|+ +|++++|+++...+..+.. ++|+.|++++|+ ++ .+| ..|..+ ++|+.|
T Consensus 149 ~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-------~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNG-------TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp TTTTTTBSSEEEEECCSCCCCEECTTTTTT-------CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEE
T ss_pred ccccchhcceeEEEcCCCCCcccCHhhcCC-------CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEE
Confidence 577778888 8888888777433332211 368888888884 76 333 346777 888888
Q ss_pred eCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 270 DLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 270 ~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
++++|.+ + .+|.. .+++|+.|+++++
T Consensus 211 ~l~~N~l-------~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 211 DVSQTSV-------T-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCCC-------C-CCCCT--TCTTCSEEECTTC
T ss_pred ECCCCcc-------c-cCChh--HhccCceeeccCc
Confidence 8888655 2 44443 5677888888765
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=1.6e-19 Score=166.18 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=98.1
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCC
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSS 93 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~ 93 (466)
..++++++++.++... ..+ .++++.|+|++|.++... +..+.. +++|++|++++|.+++..+ ..+.. ++
T Consensus 15 ~~~~l~~~~~~l~~~p--~~~--~~~l~~L~L~~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~~~--l~ 83 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVP--SGI--PADTEKLDLQSTGLATLS--DATFRG-LTKLTWLNLDYNQLQTLSA--GVFDD--LT 83 (251)
T ss_dssp GGTEEECTTCCCSSCC--SCC--CTTCCEEECTTSCCCCCC--TTTTTT-CTTCCEEECTTSCCCCCCT--TTTTT--CT
T ss_pred CCeEEecCCCCccccC--CCC--CCCCCEEEccCCCcCccC--HhHhcC-cccCCEEECCCCcCCccCH--hHhcc--CC
Confidence 4556666666665432 122 145666666666666652 222333 6666666666666666555 34555 66
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
+|++|++++|.++...+..|..+ ++|++|++++|.+++..+. .|..+++|+.|+ +.|.+++. .+ ..
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~~ 150 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHL-TQLDKLYLGGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSI----PA-------GA 150 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCC----CT-------TT
T ss_pred cCCEEECCCCcccccChhHhccc-CCCCEEEcCCCcCCCcChh-HhccCCcccEEECcCCcCCcc----CH-------HH
Confidence 66666666666665555556666 6666666666666643333 445555555555 55555443 11 23
Q ss_pred ccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCc
Q 047429 173 FSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAK 215 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~ 215 (466)
+..+++|++|++++|.+++++ ..+..+++|++|++++|.++..
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 445555555555555555533 2445555555555555555443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=4.4e-19 Score=163.17 Aligned_cols=181 Identities=23% Similarity=0.321 Sum_probs=132.9
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTS 144 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 144 (466)
...++++++++.++.++.. + .+++++|++++|.+++..+..+..+ ++|++|++++|.+.+..+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~---~----~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~--------- 76 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG---I----PADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSA--------- 76 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC---C----CTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCT---------
T ss_pred CCCeEEecCCCCccccCCC---C----CCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCH---------
Confidence 3566777777777765541 1 3467777777777776666667776 777777777777664332
Q ss_pred ccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhc
Q 047429 145 LASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNF 223 (466)
Q Consensus 145 L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 223 (466)
..+..+++|++|++++|.++.++ ..|..+++|++|++++|++++..+..+..+
T Consensus 77 --------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 77 --------------------------GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp --------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred --------------------------hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC
Confidence 34566778888888888888854 467788888888888888887666655554
Q ss_pred cccccccccceEecCCccccccCCCCcccccccCc-ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEc
Q 047429 224 SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK-QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302 (466)
Q Consensus 224 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~-~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~L 302 (466)
++|+.|++++|+++ .+|. .|..+++|++|++++|+ +++..+..+..+++|++|++
T Consensus 131 ------~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 131 ------TKLKELRLNTNQLQ-----------SIPAGAFDKLTNLQTLSLSTNQ-------LQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp ------TTCCEEECCSSCCC-----------CCCTTTTTTCTTCCEEECCSSC-------CSCCCTTTTTTCTTCCEEEC
T ss_pred ------CcccEEECcCCcCC-----------ccCHHHcCcCcCCCEEECCCCc-------CCccCHHHHhCCCCCCEEEe
Confidence 57888999998887 4443 58888999999999954 45555667889999999999
Q ss_pred cCCCCCCCch
Q 047429 303 SHNNISGMVP 312 (466)
Q Consensus 303 s~N~l~~~~p 312 (466)
++|.+.+...
T Consensus 187 ~~N~~~c~~~ 196 (251)
T 3m19_A 187 FGNQFDCSRC 196 (251)
T ss_dssp CSCCBCTTST
T ss_pred eCCceeCCcc
Confidence 9999987633
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.1e-19 Score=173.75 Aligned_cols=240 Identities=16% Similarity=0.087 Sum_probs=175.4
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
++++.++++++.+ | ..+ .+++++|+|++|+|+.+ +...+.++++|++|+|++|.+.+..+. ..|.. ++++
T Consensus 12 ~~v~C~~~~Lt~i-P-~~l--~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~--L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVTEI-P-SDL--PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSN--LPKL 81 (350)
T ss_dssp TEEEEESTTCCSC-C-TTC--CTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECCTTCCEECT-TSBCS--CTTC
T ss_pred CEEEecCCCCCcc-C-cCc--CCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCCCCCCccCh-hHhhc--chhh
Confidence 6788888888854 4 333 36799999999999987 545555599999999999998654331 45666 7777
Q ss_pred cE-EEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc--cccccccccccCCCccccCcccc
Q 047429 96 TH-LHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT--SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 96 ~~-L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~--~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
++ +.+..|+++...+..|..+ ++|++|++++|.+....+. .+....++..|+ ..+.+.... + ..
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~----~-------~~ 148 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIE----R-------NS 148 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCC-TTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTCCEEC----T-------TS
T ss_pred hhhhcccCCcccccCchhhhhc-cccccccccccccccCCch-hhcccchhhhhhhcccccccccc----c-------cc
Confidence 65 6677789998888889998 9999999999999865554 666666777777 445665541 1 34
Q ss_pred ccCC-CccCEEecCCCcCCCCCcccCCCCCcCEEEeeC-CcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 173 FSNV-TSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHD-NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 173 l~~l-~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
|..+ ..++.|++++|.++.++.......+|++|++.+ |.++...+..|..+ ++|++|++++|+++
T Consensus 149 f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l------~~L~~LdLs~N~l~------- 215 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA------SGPVILDISRTRIH------- 215 (350)
T ss_dssp STTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE------ECCSEEECTTSCCC-------
T ss_pred hhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccC------cccchhhcCCCCcC-------
Confidence 5554 468899999999999877666777899999975 66776555666666 67999999999998
Q ss_pred ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
.+|.. .+.+|+.|.+.++ +.+ ..+| .+..+++|+.+++.++
T Consensus 216 ----~lp~~--~~~~L~~L~~l~~------~~l-~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 ----SLPSY--GLENLKKLRARST------YNL-KKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ----CCCSS--SCTTCCEEECTTC------TTC-CCCC-CTTTCCSCCEEECSCH
T ss_pred ----ccChh--hhccchHhhhccC------CCc-CcCC-CchhCcChhhCcCCCC
Confidence 66653 2345555555442 222 3555 4788899999998754
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=4.6e-21 Score=198.78 Aligned_cols=339 Identities=13% Similarity=0.097 Sum_probs=198.1
Q ss_pred CCcCCcEEeCCCc-cccccchHHHhhcCCCCcEEEccCCCCCCcc-chHHHHhcCCCCCCEEEcCCCCCCCCCcc-cc-c
Q 047429 11 SLEDLQSINIGLN-AIRVRKFDQWLSYHNKLTSLSLQGLDLREAT-DWLQVVITGLPSLRELDLSSSAPPKINYR-SH-S 86 (466)
Q Consensus 11 ~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~-~ 86 (466)
.+++|++|++++| .+........+..+++|++|++++|.+++.. .+...+...+++|++|++++|. ...... .. .
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH
Confidence 6889999999999 5655444355568999999999999876642 2233344347899999999986 222210 01 1
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCc--------------------------ccc----CCCh
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQ--------------------------LQG----PTPD 136 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~--------------------------l~~----~~~~ 136 (466)
... +++|++|++++|.-....+..+..+ ++|++|+++.+. +.. ..+.
T Consensus 207 ~~~--~~~L~~L~L~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~ 283 (594)
T 2p1m_B 207 VTR--CPNLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283 (594)
T ss_dssp HHH--CTTCCEEECCTTSCHHHHHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred HHh--CCCCcEEecCCCCcHHHHHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence 233 6899999999883322356666677 788888765542 111 1222
Q ss_pred hhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCC--CCcccCCCCCcCEEEeeC----
Q 047429 137 YAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG--IPKSFGDMCCLKTLKIHD---- 209 (466)
Q Consensus 137 ~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~---- 209 (466)
.+..+++|++|+ +.|.++... +. ..+..+++|++|++++| +.. ++.....+++|++|++..
T Consensus 284 -~~~~~~~L~~L~L~~~~l~~~~---l~-------~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~ 351 (594)
T 2p1m_B 284 -VYSVCSRLTTLNLSYATVQSYD---LV-------KLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPF 351 (594)
T ss_dssp -GHHHHTTCCEEECTTCCCCHHH---HH-------HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTT
T ss_pred -HHHhhCCCCEEEccCCCCCHHH---HH-------HHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccc
Confidence 233567888888 777765431 11 23557788888888887 433 333334577888888844
Q ss_pred -----CcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccccc
Q 047429 210 -----NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHIN 284 (466)
Q Consensus 210 -----n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~ 284 (466)
+.+++.....+... + ++|+.|.+..|.+++... ......+++|+.|+++.+.. -..+.++
T Consensus 352 g~~~~~~l~~~~l~~l~~~---~--~~L~~L~~~~~~l~~~~~---------~~l~~~~~~L~~L~L~~~~~-~~~~~l~ 416 (594)
T 2p1m_B 352 VMEPNVALTEQGLVSVSMG---C--PKLESVLYFCRQMTNAAL---------ITIARNRPNMTRFRLCIIEP-KAPDYLT 416 (594)
T ss_dssp CSSCSSCCCHHHHHHHHHH---C--TTCCEEEEEESCCCHHHH---------HHHHHHCTTCCEEEEEESST-TCCCTTT
T ss_pred ccccCCCCCHHHHHHHHHh---c--hhHHHHHHhcCCcCHHHH---------HHHHhhCCCcceeEeecccC-CCccccc
Confidence 33432222222111 1 568888887777763211 11123467788888872100 0002232
Q ss_pred c-----cCCCCCCCCCCccEEEccCCCCCCCchhhhhh-hhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccc
Q 047429 285 G-----SATPKLCSSPMLQVLDFSHNNISGMVPTCLNN-LSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDS 358 (466)
Q Consensus 285 ~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (466)
+ .++..+..+++|+.|++++ .+++..+..+.. +++|+.|+++++-. .....
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i----------------------~~~~~ 473 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD----------------------SDLGM 473 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS----------------------SHHHH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC----------------------cHHHH
Confidence 1 1112245677888888866 666555555554 66676666332211 00011
Q ss_pred h-hhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 359 I-YKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 359 ~-~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
. ....+++|+.|+|++|.+++..+.. .+..+++|+.|++++|+++
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~-----------~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLA-----------NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHH-----------TGGGGGGSSEEEEESSCCB
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHH-----------HHHhCCCCCEEeeeCCCCC
Confidence 1 1145778888888888875321111 2345778888888888775
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.5e-19 Score=164.85 Aligned_cols=186 Identities=22% Similarity=0.258 Sum_probs=98.6
Q ss_pred EEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCcc
Q 047429 17 SINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLT 96 (466)
Q Consensus 17 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~ 96 (466)
.+.+..+.+++... +..+++|++|++++|.+..+. .+.. +++|++|++++|.+++..+ +.. +++|+
T Consensus 28 ~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~----~~~~-l~~L~~L~L~~n~l~~~~~----l~~--l~~L~ 93 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ----GIQY-LPNVTKLFLNGNKLTDIKP----LAN--LKNLG 93 (291)
T ss_dssp HHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCT----TGGG-CTTCCEEECCSSCCCCCGG----GTT--CTTCC
T ss_pred HHHhcCCCcccccc---hhhcCcccEEEccCCCcccCh----hHhc-CCCCCEEEccCCccCCCcc----ccc--CCCCC
Confidence 33444444443322 334555555566655555441 2333 5556666666665554432 333 55566
Q ss_pred EEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccC
Q 047429 97 HLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSN 175 (466)
Q Consensus 97 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~ 175 (466)
+|++++|.+++. ..+..+ ++|++|++++|.+.+. . .+..+++|+.|+ +.|.+++. ..+..
T Consensus 94 ~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~i~~~--~-~l~~l~~L~~L~l~~n~l~~~-------------~~l~~ 154 (291)
T 1h6t_A 94 WLFLDENKVKDL--SSLKDL-KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI-------------TVLSR 154 (291)
T ss_dssp EEECCSSCCCCG--GGGTTC-TTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCCCC-------------GGGGG
T ss_pred EEECCCCcCCCC--hhhccC-CCCCEEECCCCcCCCC--h-hhcCCCCCCEEEccCCcCCcc-------------hhhcc
Confidence 666666655542 224455 5566666666655532 2 455555566665 55555543 24555
Q ss_pred CCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 176 VTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
+++|++|++++|.+++++. +..+++|++|++++|.+++. +. +..+ ++|+.|++++|.++.
T Consensus 155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~~-l~~l------~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RA-LAGL------KNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GG-GTTC------TTCSEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-hh-hccC------CCCCEEECcCCcccC
Confidence 6666666666666666543 56666666666666666543 22 2222 456666666666653
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.9e-18 Score=176.12 Aligned_cols=189 Identities=24% Similarity=0.301 Sum_probs=148.2
Q ss_pred CCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcc
Q 047429 66 SLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSL 145 (466)
Q Consensus 66 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 145 (466)
+|++|++++|.+++++. .+ .++|++|++++|.++. +| ..+ ++|++|++++|.+++ +|. +.+ +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~---~l----~~~L~~L~Ls~N~l~~-ip---~~l-~~L~~L~Ls~N~l~~-ip~--l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD---NL----PPQITVLEITQNALIS-LP---ELP-ASLEYLDACDNRLST-LPE--LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCS---CC----CTTCSEEECCSSCCSC-CC---CCC-TTCCEEECCSSCCSC-CCC--CCT--TC
T ss_pred CccEEEeCCCCCCccCH---hH----cCCCCEEECcCCCCcc-cc---ccc-CCCCEEEccCCCCCC-cch--hhc--CC
Confidence 88888888888887554 12 3578888888888874 44 234 788888888888875 554 333 78
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
+.|+ +.|.+++ +| . .+++|+.|++++|.++++|. .+++|++|++++|.+++ +|. +.
T Consensus 123 ~~L~Ls~N~l~~-----lp-------~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--- 179 (571)
T 3cvr_A 123 KHLDVDNNQLTM-----LP-------E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--- 179 (571)
T ss_dssp CEEECCSSCCSC-----CC-------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC---
T ss_pred CEEECCCCcCCC-----CC-------C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh---
Confidence 8888 8888776 44 2 57899999999999999887 57899999999999987 444 32
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCC-------cEEeCCCCeeeeecccccccCCCCCCCCCCc
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSL-------VELDLESNQLWLRFNHINGSATPKLCSSPML 297 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L-------~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L 297 (466)
++|+.|++++|.|+ .+|. +.. +| +.|+|++|.| ..+|..+..+++|
T Consensus 180 -----~~L~~L~Ls~N~L~-----------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l--------~~lp~~l~~l~~L 232 (571)
T 3cvr_A 180 -----ESLEALDVSTNLLE-----------SLPA-VPV--RNHHSEETEIFFRCRENRI--------THIPENILSLDPT 232 (571)
T ss_dssp -----TTCCEEECCSSCCS-----------SCCC-CC----------CCEEEECCSSCC--------CCCCGGGGGSCTT
T ss_pred -----CCCCEEECcCCCCC-----------chhh-HHH--hhhcccccceEEecCCCcc--------eecCHHHhcCCCC
Confidence 47999999999998 5565 443 66 9999999766 4688888889999
Q ss_pred cEEEccCCCCCCCchhhhhhhhhh
Q 047429 298 QVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 298 ~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
+.|+|++|.+++.+|..|..++..
T Consensus 233 ~~L~L~~N~l~~~~p~~l~~l~~~ 256 (571)
T 3cvr_A 233 CTIILEDNPLSSRIRESLSQQTAQ 256 (571)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHS
T ss_pred CEEEeeCCcCCCcCHHHHHHhhcC
Confidence 999999999999999999988764
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.5e-18 Score=163.12 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred ccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccc
Q 047429 95 LTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAF 173 (466)
Q Consensus 95 L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l 173 (466)
+..+.+..+.++... .+..+ ++|++|++++|.+... + .+..+++|+.|+ +.|.+++. + .+
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l-~~L~~L~l~~~~i~~~-~--~~~~l~~L~~L~L~~n~l~~~-----~--------~l 86 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNEL-NSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDI-----K--------PL 86 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHH-HTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCC-----G--------GG
T ss_pred HHHHHhcCCCccccc--chhhc-CcccEEEccCCCcccC-h--hHhcCCCCCEEEccCCccCCC-----c--------cc
Confidence 334445555554332 22344 6667777777766532 2 244444444444 44444432 1 13
Q ss_pred cCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCC
Q 047429 174 SNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 174 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 213 (466)
..+++|++|++++|.+++++. +..+++|++|++++|.++
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCC
T ss_pred ccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCC
Confidence 444444444444444444322 444444444444444444
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.3e-18 Score=153.61 Aligned_cols=62 Identities=31% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 65 PSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 65 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
++|++|++++|.++..++ ..+.. +++|++|++++|.++...+..|..+ ++|++|++++|.++
T Consensus 28 ~~l~~L~l~~n~l~~~~~--~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN--GVFDE--LTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTNQLQ 89 (208)
T ss_dssp TTCSEEECCSSCCCCCCT--TTTTT--CTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCC
T ss_pred CCCcEEEcCCCccCcCCh--hhhcc--cccCcEEECCCCccCccChhhcCCC-CCcCEEECCCCcCC
Confidence 345555555555544433 23333 4455555555555544433344444 45555555555544
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=5.8e-18 Score=172.54 Aligned_cols=186 Identities=30% Similarity=0.379 Sum_probs=147.7
Q ss_pred CccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcccc
Q 047429 94 SLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYA 172 (466)
Q Consensus 94 ~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~ 172 (466)
++++|++++|.+++ +|..+ . ++|++|++++|.++ .+| ..+++|+.|+ +.|.+++ +| .
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~-~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-----ip-------~- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--P-PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-----LP-------E- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--C-TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-----CC-------C-
T ss_pred CccEEEeCCCCCCc-cCHhH--c-CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-----cc-------h-
Confidence 89999999999987 55544 2 78999999999998 555 3478899999 9998887 44 3
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
+.. +|++|++++|.++++|. .+++|++|++++|.+++ +|. . +++|+.|++++|.++
T Consensus 118 l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~------l~~L~~L~Ls~N~L~--------- 173 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---L------PTSLEVLSVRNNQLT--------- 173 (571)
T ss_dssp CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---C------CTTCCEEECCSSCCS---------
T ss_pred hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---c------CCCcCEEECCCCCCC---------
Confidence 333 89999999999999887 68899999999999986 443 1 257999999999998
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCc-------cEEEccCCCCCCCchhhhhhhhhhhhcC
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPML-------QVLDFSHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
.+|. +. ++|++|+|++|.| ..+|. +.. +| +.|+|++|.|+ .+|..+..+++|
T Consensus 174 --~lp~-l~--~~L~~L~Ls~N~L--------~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L---- 232 (571)
T 3cvr_A 174 --FLPE-LP--ESLEALDVSTNLL--------ESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT---- 232 (571)
T ss_dssp --CCCC-CC--TTCCEEECCSSCC--------SSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT----
T ss_pred --Ccch-hh--CCCCEEECcCCCC--------Cchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC----
Confidence 5566 54 8999999999766 35555 443 66 99999999998 467666655555
Q ss_pred CCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 326 SSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 326 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
+.|+|++|.+++.+|..+..+
T Consensus 233 ------------------------------------------~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 233 ------------------------------------------CTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ------------------------------------------EEEECCSSSCCHHHHHHHHHH
T ss_pred ------------------------------------------CEEEeeCCcCCCcCHHHHHHh
Confidence 899999999999888887764
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=4.5e-18 Score=151.74 Aligned_cols=172 Identities=24% Similarity=0.249 Sum_probs=130.7
Q ss_pred cEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCc
Q 047429 16 QSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSL 95 (466)
Q Consensus 16 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L 95 (466)
+.++++++.++.... ...++|++|++++|.++.+ +...+..+++|++|++++|.++..++ ..+.. +++|
T Consensus 10 ~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~--l~~L 78 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSL---PNGVFDELTSLTQLYLGGNKLQSLPN--GVFNK--LTSL 78 (208)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCCCCT--TTTTT--CTTC
T ss_pred CEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcC---ChhhhcccccCcEEECCCCccCccCh--hhcCC--CCCc
Confidence 578888888775432 2246899999999999877 44444449999999999999998766 45667 8999
Q ss_pred cEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCccccCccccccC
Q 047429 96 THLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPITLVRPKYAFSN 175 (466)
Q Consensus 96 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~ 175 (466)
++|++++|.+++..+..+..+ ++|++|++++|.+.+..+ ..+..
T Consensus 79 ~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~-----------------------------------~~~~~ 122 (208)
T 2o6s_A 79 TYLNLSTNQLQSLPNGVFDKL-TQLKELALNTNQLQSLPD-----------------------------------GVFDK 122 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCT-----------------------------------TTTTT
T ss_pred CEEECCCCcCCccCHhHhcCc-cCCCEEEcCCCcCcccCH-----------------------------------hHhcc
Confidence 999999999997777778888 999999999998874322 23556
Q ss_pred CCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCC
Q 047429 176 VTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLP 247 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 247 (466)
+++|++|++++|.+++++. .+..+++|++|++++|.+.+.. ++|+.|+++.|+++|.+|
T Consensus 123 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------------~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------------PGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------------TTTHHHHHHHHHCTTTBB
T ss_pred CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------------CCHHHHHHHHHhCCceee
Confidence 6778888888888877554 4677888888888888776433 347778888888875443
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=150.20 Aligned_cols=154 Identities=22% Similarity=0.305 Sum_probs=113.9
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccc-hhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLP-ELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
-+.+++++|.++.+|..+. +.+++|++++|.+++..+ ..+..+ ++|+.|++++|.+++.. +
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l------~~L~~L~L~~N~i~~i~----------~ 74 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKL------PQLRKINFSNNKITDIE----------E 74 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGC------TTCCEEECCSSCCCEEC----------T
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccC------CCCCEEECCCCcCCEEC----------H
Confidence 3578888888888877553 356888888888886644 334444 57888888888887322 2
Q ss_pred cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeec
Q 047429 258 KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQL 337 (466)
Q Consensus 258 ~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~ 337 (466)
..|..+++|++|+|++| .+++..+..|..+++|++|+|++|.+++..|..|.++++|
T Consensus 75 ~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------- 131 (220)
T 2v70_A 75 GAFEGASGVNEILLTSN-------RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV---------------- 131 (220)
T ss_dssp TTTTTCTTCCEEECCSS-------CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC----------------
T ss_pred HHhCCCCCCCEEECCCC-------ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC----------------
Confidence 35788888888888884 4455555668888888888888888887777777766555
Q ss_pred cCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcc
Q 047429 338 IDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSG 415 (466)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~ 415 (466)
++|+|++|++++ ..|..|..+++|+.|++++|.+.+
T Consensus 132 ------------------------------~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 132 ------------------------------RLLSLYDNQITT------------VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ------------------------------SEEECTTSCCCC------------BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ------------------------------CEEECCCCcCCE------------ECHHHhcCCCCCCEEEecCcCCcC
Confidence 888888888884 225567888888888888888874
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1e-17 Score=172.47 Aligned_cols=174 Identities=25% Similarity=0.317 Sum_probs=98.9
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.++.+. . +.. +++|++|+|++|.+...+ .
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~Ls~N~l~~~~---~-l~~-l~~L~~L~Ls~N~l~~l~----~ 104 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIK---P-LTN-LKNLGWLFLDENKIKDLS----S 104 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCC---TTGGGCTTCCEEECTTSCCCCCG---G-GGG-CTTCCEEECCSSCCCCCT----T
T ss_pred cchhcCCCCCEEECcCCCCCCC---hHHccCCCCCEEEeeCCCCCCCh---h-hcc-CCCCCEEECcCCCCCCCh----h
Confidence 3344566666666666666543 23556666666666666666552 2 333 666666666666665532 3
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
+.. +++|++|+|++|.+.+. ..+..+ ++|+.|+|++|.+.+. . .+..+++|+.|+ +.|.+++.
T Consensus 105 l~~--l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~~-------- 168 (605)
T 1m9s_A 105 LKD--LKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDI-------- 168 (605)
T ss_dssp STT--CTTCCEEECTTSCCCCC--GGGGGC-TTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCCCC--------
T ss_pred hcc--CCCCCEEEecCCCCCCC--ccccCC-CccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCCCc--------
Confidence 344 56666666666666543 235555 6666666666666543 2 455566666666 55555543
Q ss_pred ccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCC
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTA 214 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~ 214 (466)
..+..+++|+.|+|++|.+++++ .+..+++|+.|+|++|.+.+
T Consensus 169 -----~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 -----VPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----GGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred -----hhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 12455566666666666665553 35556666666666665554
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.3e-17 Score=148.38 Aligned_cols=152 Identities=24% Similarity=0.328 Sum_probs=114.0
Q ss_pred CEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc
Q 047429 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ 259 (466)
Q Consensus 180 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~ 259 (466)
+.++++++.++.+|..+. ++++.|++++|.+++..+..+..+ ++|+.|++++|.+++. .|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l------~~L~~L~Ls~N~i~~~----------~~~~ 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPY------KKLRRIDLSNNQISEL----------APDA 75 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTC------TTCCEEECCSSCCCEE----------CTTT
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCC------CCCCEEECCCCcCCCc----------CHHH
Confidence 578888888888877554 578888888888887666666555 5788888888888732 2456
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccC
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLID 339 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~ 339 (466)
|..+++|++|+|++|.| ++..+..|..+++|++|+|++|.+++..|..|.++++|
T Consensus 76 ~~~l~~L~~L~Ls~N~l-------~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------ 130 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKI-------TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL------------------ 130 (220)
T ss_dssp TTTCSSCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------
T ss_pred hhCCcCCCEEECCCCcC-------CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC------------------
Confidence 88888888888888554 43444556788888888888888888777777766555
Q ss_pred CCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 340 DPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|+|++|++++ + .|..|..+++|+.|+|++|.+.
T Consensus 131 ----------------------------~~L~L~~N~l~~-~-----------~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 131 ----------------------------NLLSLYDNKLQT-I-----------AKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ----------------------------CEEECCSSCCSC-C-----------CTTTTTTCTTCCEEECCSSCEE
T ss_pred ----------------------------CEEECCCCcCCE-E-----------CHHHHhCCCCCCEEEeCCCCcC
Confidence 888888888883 2 2335777888888888888875
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1e-17 Score=154.95 Aligned_cols=108 Identities=17% Similarity=0.298 Sum_probs=67.2
Q ss_pred cccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcc
Q 047429 172 AFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTE 251 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 251 (466)
.+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+ +..+ ++|+.|++++|+++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l------~~L~~L~L~~N~l~-------- 98 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDL------TKLEELSVNRNRLK-------- 98 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC------SSCCEEECCSSCCS--------
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccC------CCCCEEECCCCccC--------
Confidence 3556667777777777776665 56667777777777777765444 3333 45777777777776
Q ss_pred cccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 252 LDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 252 l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
.+|... . ++|++|++++|.+ + .+ +.+..+++|++|++++|++++.
T Consensus 99 ---~l~~~~-~-~~L~~L~L~~N~l-------~-~~-~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 99 ---NLNGIP-S-ACLSRLFLDNNEL-------R-DT-DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp ---CCTTCC-C-SSCCEEECCSSCC-------S-BS-GGGTTCTTCCEEECTTSCCCBC
T ss_pred ---CcCccc-c-CcccEEEccCCcc-------C-CC-hhhcCcccccEEECCCCcCCCC
Confidence 333222 2 6677777777544 2 22 3466777777777777777643
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=9e-18 Score=148.42 Aligned_cols=152 Identities=17% Similarity=0.252 Sum_probs=97.1
Q ss_pred hcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhh
Q 047429 35 SYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS 114 (466)
Q Consensus 35 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 114 (466)
..+++|++|++++|.++.+ + .+.. +++|++|++++|.++.. ..+.. +++|++|++++|.+++..+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l---~-~l~~-l~~L~~L~l~~n~~~~~----~~l~~--l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL---T-GIEY-AHNIKDLTINNIHATNY----NPISG--LSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC---T-TGGG-CTTCSEEEEESCCCSCC----GGGTT--CTTCCEEEEECTTCBGGGSCCCT
T ss_pred hhcCCccEEeccCCCccCh---H-HHhc-CCCCCEEEccCCCCCcc----hhhhc--CCCCCEEEeECCccCcccChhhc
Confidence 4456777778887777765 3 3445 77788888877766544 23445 77788888888777766667777
Q ss_pred cccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccc-cccccccCCCccccCccccccCCCccCEEecCCCcCCCC
Q 047429 115 HISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNY-ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI 192 (466)
Q Consensus 115 ~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~-l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 192 (466)
.+ ++|++|++++|.+.+..+. .++.+++|+.|+ +.|. ++.. ..+..+++|++|++++|.++++
T Consensus 110 ~l-~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~-------------~~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 110 GL-TSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDI-------------MPLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp TC-TTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCC-------------GGGGGCSSCCEEECTTBCCCCC
T ss_pred CC-CCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcccc-------------HhhcCCCCCCEEECCCCCCcCh
Confidence 77 7788888888777755555 555666666666 5554 4432 2355566666666666666665
Q ss_pred CcccCCCCCcCEEEeeCCcCC
Q 047429 193 PKSFGDMCCLKTLKIHDNILT 213 (466)
Q Consensus 193 ~~~l~~l~~L~~L~L~~n~l~ 213 (466)
+ .+..+++|++|++++|++.
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T-TGGGCSSCCEEEECBC---
T ss_pred H-HhccCCCCCEEEeeCcccC
Confidence 4 4556666666666666654
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=161.32 Aligned_cols=174 Identities=25% Similarity=0.244 Sum_probs=100.9
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc-cCCCCCccEEEcCCCCCCchhhhhhhcccCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV-NSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 119 (466)
+.+++++++++.+ |..+ .+.+++|+|++|.++...+ ..+. . +++|++|++++|.++...+..|..+ ++
T Consensus 21 ~~l~c~~~~l~~i---P~~~---~~~l~~L~Ls~N~l~~l~~--~~~~~~--l~~L~~L~L~~N~i~~i~~~~~~~l-~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNV---PQSL---PSYTALLDLSHNNLSRLRA--EWTPTR--LTNLHSLLLSHNHLNFISSEAFVPV-PN 89 (361)
T ss_dssp TEEECCSSCCSSC---CSSC---CTTCSEEECCSSCCCEECT--TSSSSC--CTTCCEEECCSSCCCEECTTTTTTC-TT
T ss_pred CEEEeCCCCcCcc---CccC---CCCCCEEECCCCCCCccCh--hhhhhc--ccccCEEECCCCcCCccChhhccCC-CC
Confidence 4555555555554 2221 2345556666665555444 2333 3 5556666666666655555555555 56
Q ss_pred CcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCccc--
Q 047429 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSF-- 196 (466)
Q Consensus 120 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l-- 196 (466)
|++|+|++|.+....+. .|.++++|+.|+ +.|.++.. .+ ..|..+++|++|+|++|.++.+|..+
T Consensus 90 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~----~~-------~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVV----DR-------NAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp CCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEE----CT-------TTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred CCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEE----CH-------HHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 66666666665544433 555556666666 55555544 23 45667777778888888777766543
Q ss_pred --CCCCCcCEEEeeCCcCCCccchhhhhccccccccc--cceEecCCcccc
Q 047429 197 --GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKS--LQSFMLQNNMLS 243 (466)
Q Consensus 197 --~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~--L~~L~L~~n~l~ 243 (466)
..+++|++|+|++|++++..+..+..+ +. ++.|++++|.+.
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l------~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKL------PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHS------CHHHHTTEECCSSCEE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhc------cHhhcceEEecCCCcc
Confidence 457778888888888776555555443 22 467777777765
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4.6e-18 Score=165.01 Aligned_cols=107 Identities=27% Similarity=0.237 Sum_probs=47.2
Q ss_pred cCEEecCCCcCCCCC-cccC-CCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccccc
Q 047429 179 LMDLDLSKNQITGIP-KSFG-DMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF 256 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~-~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l 256 (466)
++.|+|++|.++.++ ..+. .+++|++|+|++|++++..+..|..+ ++|+.|+|++|+++ .+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l------~~L~~L~Ls~N~l~-----------~~ 103 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV------PNLRYLDLSSNHLH-----------TL 103 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC------TTCCEEECCSSCCC-----------EE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC------CCCCEEECCCCcCC-----------cC
Confidence 444555555544422 2233 44455555555555444443333333 34455555555444 22
Q ss_pred C-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCC
Q 047429 257 P-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISG 309 (466)
Q Consensus 257 p-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 309 (466)
+ ..|..+++|++|+|++|+ +++..+..|..+++|++|+|++|.+++
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNH-------IVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CHHHhCCCcCCCEEECCCCc-------ccEECHHHhCCcccCCEEECCCCcCCe
Confidence 2 124444445555554422 223334444444455555555554443
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.3e-17 Score=145.78 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=120.4
Q ss_pred ccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccc
Q 047429 173 FSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTEL 252 (466)
Q Consensus 173 l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l 252 (466)
...+++|++|++++|.++.+| .+..+++|++|++++|.++.. + .+..+ ++|++|++++|.+++.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l------~~L~~L~l~~n~l~~~------- 103 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-N-PISGL------SNLERLRIMGKDVTSD------- 103 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-G-GGTTC------TTCCEEEEECTTCBGG-------
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-h-hhhcC------CCCCEEEeECCccCcc-------
Confidence 356788999999999999887 688899999999999977633 2 33333 6799999999999842
Q ss_pred ccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCC-CCCCchhhhhhhhhhhhcCCCCcee
Q 047429 253 DGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNN-ISGMVPTCLNNLSAMVQNGSSNVIV 331 (466)
Q Consensus 253 ~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~l~~~n~~~ 331 (466)
.|..+..+++|++|++++|. +++..+..++.+++|++|++++|. ++ .+| .+..++
T Consensus 104 ---~~~~l~~l~~L~~L~Ls~n~-------i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~------------ 159 (197)
T 4ezg_A 104 ---KIPNLSGLTSLTLLDISHSA-------HDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP------------ 159 (197)
T ss_dssp ---GSCCCTTCTTCCEEECCSSB-------CBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS------------
T ss_pred ---cChhhcCCCCCCEEEecCCc-------cCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC------------
Confidence 35568889999999999954 455567788899999999999998 65 444 455444
Q ss_pred eeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCC
Q 047429 332 EYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNN 411 (466)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N 411 (466)
+|++|++++|+++ .+| .+..+++|+.|++++|
T Consensus 160 ----------------------------------~L~~L~l~~n~i~-------------~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 160 ----------------------------------ELKSLNIQFDGVH-------------DYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ----------------------------------SCCEEECTTBCCC-------------CCT-TGGGCSSCCEEEECBC
T ss_pred ----------------------------------CCCEEECCCCCCc-------------ChH-HhccCCCCCEEEeeCc
Confidence 4499999999998 334 5889999999999999
Q ss_pred cCcc
Q 047429 412 NFSG 415 (466)
Q Consensus 412 ~l~~ 415 (466)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9863
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.4e-17 Score=168.62 Aligned_cols=190 Identities=22% Similarity=0.256 Sum_probs=128.4
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCC
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSS 91 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 91 (466)
+..+..+.+..+.+.+... +..+++|+.|++++|.+..+. .+.. +++|++|+|++|.+.+.++ +..
T Consensus 20 l~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~----~l~~-l~~L~~L~Ls~N~l~~~~~----l~~-- 85 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ----GIQY-LPNVTKLFLNGNKLTDIKP----LTN-- 85 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT----TGGG-CTTCCEEECTTSCCCCCGG----GGG--
T ss_pred HHHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh----HHcc-CCCCCEEEeeCCCCCCChh----hcc--
Confidence 3445566777777665533 456777888888888877762 3445 8888888888888877644 455
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+++|++|+|++|.+.+. ..+..+ ++|++|+|++|.+.+. . .+..+++|+.|+ +.|.+++.
T Consensus 86 l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l------------- 146 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDL--SSLKDL-KKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDI------------- 146 (605)
T ss_dssp CTTCCEEECCSSCCCCC--TTSTTC-TTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSCCCCC-------------
T ss_pred CCCCCEEECcCCCCCCC--hhhccC-CCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCccCCc-------------
Confidence 78888888888888753 356677 7888888888887742 3 566677777777 66666654
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+++|+.|+|++|.+.+++. +..+++|+.|+|++|.+++. +. +..+ ++|+.|+|++|.++
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~~-l~~l------~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RA-LAGL------KNLDVLELFSQECL 210 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GG-GTTC------TTCSEEECCSEEEE
T ss_pred hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-hH-HccC------CCCCEEEccCCcCc
Confidence 356666777777777777766544 66677777777777776643 22 2222 45777777777666
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.6e-16 Score=143.89 Aligned_cols=154 Identities=25% Similarity=0.356 Sum_probs=111.3
Q ss_pred ccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 178 SLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
..+.++.+++.++.+|..+. ++|++|++++|.+++..+..+..+ ++|+.|++++|.++ .+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~L~~N~l~-----------~i~ 80 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSL------INLKELYLGSNQLG-----------ALP 80 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCC-----------CCC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCc------cCCcEEECCCCCCC-----------CcC
Confidence 35678888888888777554 678888888888887777666555 57888888888886 444
Q ss_pred -cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeee
Q 047429 258 -KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQ 336 (466)
Q Consensus 258 -~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~ 336 (466)
..|..+++|++|+|++|++ ++..+..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l-------~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L--------------- 137 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQL-------TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL--------------- 137 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC---------------
T ss_pred hhhcccCCCcCEEECCCCcC-------CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC---------------
Confidence 3467788888888888544 4444556778888888888888887 556666555544
Q ss_pred ccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCccc
Q 047429 337 LIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGK 416 (466)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 416 (466)
++|+|++|+++ .+| +..|..+++|+.|++++|.+.+.
T Consensus 138 -------------------------------~~L~L~~N~l~-~~~-----------~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 138 -------------------------------THLALDQNQLK-SIP-----------HGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -------------------------------SEEECCSSCCC-CCC-----------TTTTTTCTTCCEEECTTSCBCTT
T ss_pred -------------------------------CEEECCCCcCC-ccC-----------HHHHhCCCCCCEEEeeCCCccCC
Confidence 78888888887 222 23477788888888888887643
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=6.7e-18 Score=156.26 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=124.5
Q ss_pred CCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccC
Q 047429 11 SLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNS 90 (466)
Q Consensus 11 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 90 (466)
++.+++.++++++.+++.. .+..+++|++|++++|+++.+ + .+.. +++|++|++++|.+++.++ +..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l---~-~l~~-l~~L~~L~L~~N~i~~~~~----l~~- 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSL---A-GMQF-FTNLKELHLSHNQISDLSP----LKD- 83 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCC---T-TGGG-CTTCCEEECCSSCCCCCGG----GTT-
T ss_pred HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccc---h-HHhh-CCCCCEEECCCCccCCChh----hcc-
Confidence 5666777888888887653 367788888888888888776 3 4455 8888888888888887644 555
Q ss_pred CCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCc
Q 047429 91 SSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRP 169 (466)
Q Consensus 91 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~ 169 (466)
+++|++|++++|++++..+ +.. ++|++|++++|.+++. . .+..+++|+.|+ +.|.+++.
T Consensus 84 -l~~L~~L~L~~N~l~~l~~--~~~--~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~~~------------ 143 (263)
T 1xeu_A 84 -LTKLEELSVNRNRLKNLNG--IPS--ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLKSI------------ 143 (263)
T ss_dssp -CSSCCEEECCSSCCSCCTT--CCC--SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCCBC------------
T ss_pred -CCCCCEEECCCCccCCcCc--ccc--CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCCCC------------
Confidence 7888888888888876432 211 5788888888888753 2 567777777777 77777664
Q ss_pred cccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCcc
Q 047429 170 KYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKL 216 (466)
Q Consensus 170 ~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~ 216 (466)
..+..+++|++|++++|.++++ ..+..+++|++|++++|.++...
T Consensus 144 -~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 144 -VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 3566777788888888877776 55677778888888887776543
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=145.69 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=96.0
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L 120 (466)
+.+++++|.++.+ |..+ .+.+++|++++|.++...+. ..+.. +++|++|++++|.+++..+..|..+ ++|
T Consensus 14 ~~l~~s~n~l~~i---P~~~---~~~~~~L~L~~N~l~~~~~~-~~~~~--l~~L~~L~L~~N~i~~i~~~~~~~l-~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKI---PEHI---PQYTAELRLNNNEFTVLEAT-GIFKK--LPQLRKINFSNNKITDIEEGAFEGA-SGV 83 (220)
T ss_dssp TEEECCSSCCSSC---CSCC---CTTCSEEECCSSCCCEECCC-CCGGG--CTTCCEEECCSSCCCEECTTTTTTC-TTC
T ss_pred CEeEeCCCCcccC---ccCC---CCCCCEEEcCCCcCCccCch-hhhcc--CCCCCEEECCCCcCCEECHHHhCCC-CCC
Confidence 4566666666555 2222 23456666666666655331 23444 6666666666666666555566666 666
Q ss_pred cEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCC-CcccCC
Q 047429 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGD 198 (466)
Q Consensus 121 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~ 198 (466)
++|+|++|.+++..+. .|..+++|++|+ +.|.+++. .| ..|..+++|++|+|++|.++++ |..|..
T Consensus 84 ~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 84 NEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCV----GN-------DSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp CEEECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCCCB----CT-------TSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CEEECCCCccCccCHh-HhcCCcCCCEEECCCCcCCeE----CH-------hHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 6666666666644443 555555566555 55555554 33 4566777888888888888874 667778
Q ss_pred CCCcCEEEeeCCcCCCccc
Q 047429 199 MCCLKTLKIHDNILTAKLP 217 (466)
Q Consensus 199 l~~L~~L~L~~n~l~~~~~ 217 (466)
+++|++|++++|.+....+
T Consensus 152 l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 152 LHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTCCEEECCSCCEECSGG
T ss_pred CCCCCEEEecCcCCcCCCc
Confidence 8888888888887765443
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=7.6e-18 Score=177.67 Aligned_cols=185 Identities=18% Similarity=0.103 Sum_probs=115.7
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.++ .+|..+..+ ++|+.|+|++|.|+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l------~~L~~L~Ls~N~l~------- 283 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL------SNLRVLDLSHNRLT------- 283 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG------TTCCEEECTTSCCS-------
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC------CCCCEEeCcCCcCC-------
Confidence 5788899999999999999999888889999999999999998 667766666 68999999999998
Q ss_pred ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhh-cCCC-C
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQ-NGSS-N 328 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-l~~~-n 328 (466)
.+|..+..+++|++|+|++|.| +.+|..|+.+++|++|+|++|.+++.+|..+..+..... +++. |
T Consensus 284 ----~lp~~~~~l~~L~~L~L~~N~l--------~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 284 ----SLPAELGSCFQLKYFYFFDNMV--------TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp ----SCCSSGGGGTTCSEEECCSSCC--------CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----ccChhhcCCCCCCEEECCCCCC--------CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 7788899999999999999766 578888999999999999999999999998877643321 2211 1
Q ss_pred ceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCC----cCCcCCcHHHHhhccCCCcccccCCCCCC
Q 047429 329 VIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDN----NLSGKIPEEITSLLIGKIPRSFSQLSHLG 404 (466)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N----~l~~~ip~~i~~l~~~~ip~~l~~l~~L~ 404 (466)
.+.. .....++.|++++| ...|.+|. .++..+..+..+.
T Consensus 352 ~l~~-----------------------------~~p~~l~~l~l~~n~~~~~~~~~l~~--------~~~~~~~~l~~~~ 394 (727)
T 4b8c_D 352 RPEI-----------------------------PLPHERRFIEINTDGEPQREYDSLQQ--------STEHLATDLAKRT 394 (727)
T ss_dssp CCCC-----------------------------CCCCC------------------------------------------
T ss_pred cccC-----------------------------cCccccceeEeecccccccccCCccc--------cccchhhcccccc
Confidence 1110 01234567777777 22223332 3344566777788
Q ss_pred eeeccCCcCcccCC
Q 047429 405 VVNLSNNNFSGKIP 418 (466)
Q Consensus 405 ~L~Ls~N~l~~~ip 418 (466)
...+++|.+.+...
T Consensus 395 ~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 395 FTVLSYNTLCQHYA 408 (727)
T ss_dssp -------CCCGGGC
T ss_pred eeeeeccccccccC
Confidence 88889998865443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.9e-19 Score=184.27 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=15.3
Q ss_pred CCCcEEEccCCccccCCChhhhhcCCcccccc
Q 047429 118 KSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT 149 (466)
Q Consensus 118 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 149 (466)
++|+.|+|++|.+. .+|. .++++++|+.|+
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~ 378 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQS-ELESCKELQELE 378 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHH-HHHHHHHHHHHC
T ss_pred ccceeccCChhhHH-hhHH-HHHHHHHHHHhc
Confidence 44555555555554 3444 555555555554
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=3.6e-16 Score=141.47 Aligned_cols=153 Identities=22% Similarity=0.243 Sum_probs=99.3
Q ss_pred CcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCC
Q 047429 40 LTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKS 119 (466)
Q Consensus 40 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 119 (466)
-+.++.++++++.+ |..+ .++|++|++++|.++...+ ..+.. +++|++|++++|.++...+..|..+ ++
T Consensus 21 ~~~v~c~~~~l~~i---p~~~---~~~L~~L~Ls~n~i~~~~~--~~~~~--l~~L~~L~L~~N~l~~i~~~~~~~l-~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHASV---PAGI---PTNAQILYLHDNQITKLEP--GVFDS--LINLKELYLGSNQLGALPVGVFDSL-TQ 89 (229)
T ss_dssp TTEEECTTSCCSSC---CSCC---CTTCSEEECCSSCCCCCCT--TTTTT--CTTCCEEECCSSCCCCCCTTTTTTC-TT
T ss_pred CCEeEccCCCcCcc---CCCC---CCCCCEEEcCCCccCccCH--HHhhC--ccCCcEEECCCCCCCCcChhhcccC-CC
Confidence 45677777777776 3222 3677788888887777665 45666 7778888888887776655666777 77
Q ss_pred CcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC-cccC
Q 047429 120 LVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP-KSFG 197 (466)
Q Consensus 120 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~l~ 197 (466)
|++|+|++|.+++..+. .|..+++|+.|+ +.|.++. +| ..+..+++|++|++++|.++.++ ..+.
T Consensus 90 L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~-----lp-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSA-VFDRLVHLKELFMCCNKLTE-----LP-------RGIERLTHLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCS-----CC-------TTGGGCTTCSEEECCSSCCCCCCTTTTT
T ss_pred cCEEECCCCcCCccChh-HhCcchhhCeEeccCCcccc-----cC-------cccccCCCCCEEECCCCcCCccCHHHHh
Confidence 88888888877754444 556666666666 6666553 33 44556666666666666666644 3455
Q ss_pred CCCCcCEEEeeCCcCCCcc
Q 047429 198 DMCCLKTLKIHDNILTAKL 216 (466)
Q Consensus 198 ~l~~L~~L~L~~n~l~~~~ 216 (466)
.+++|++|++++|.+....
T Consensus 157 ~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCTTCCEEECTTSCBCTTB
T ss_pred CCCCCCEEEeeCCCccCCc
Confidence 6666666666666665443
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.2e-16 Score=140.86 Aligned_cols=149 Identities=22% Similarity=0.265 Sum_probs=79.1
Q ss_pred cEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCC
Q 047429 41 TSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSL 120 (466)
Q Consensus 41 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L 120 (466)
+.+++++++++.+ |..+ .++|++|++++|.++.+++ ..+.. +++|++|++++|.+++..|..|..+ ++|
T Consensus 14 ~~v~c~~~~l~~i---P~~l---~~~l~~L~l~~n~i~~i~~--~~~~~--l~~L~~L~Ls~N~i~~~~~~~~~~l-~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTEI---PTNL---PETITEIRLEQNTIKVIPP--GAFSP--YKKLRRIDLSNNQISELAPDAFQGL-RSL 82 (220)
T ss_dssp TEEECTTSCCSSC---CSSC---CTTCCEEECCSSCCCEECT--TSSTT--CTTCCEEECCSSCCCEECTTTTTTC-SSC
T ss_pred CEEEcCCCCcCcC---CCcc---CcCCCEEECCCCcCCCcCH--hHhhC--CCCCCEEECCCCcCCCcCHHHhhCC-cCC
Confidence 4566666666665 2222 2466666776666665554 34555 6666666666666666666666666 666
Q ss_pred cEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc-ccCC
Q 047429 121 VYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGD 198 (466)
Q Consensus 121 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~ 198 (466)
++|+|++|.++...+. .|.++++|+.|+ +.|.+++. .+ ..|..+++|++|+|++|.++.++. .|..
T Consensus 83 ~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~l~~~----~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 83 NSLVLYGNKITELPKS-LFEGLFSLQLLLLNANKINCL----RV-------DAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp CEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCC----CT-------TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CEEECCCCcCCccCHh-HccCCCCCCEEECCCCCCCEe----CH-------HHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 6666666666633222 344444444444 44444443 22 334444444444444444444322 3444
Q ss_pred CCCcCEEEeeCCcC
Q 047429 199 MCCLKTLKIHDNIL 212 (466)
Q Consensus 199 l~~L~~L~L~~n~l 212 (466)
+++|++|++++|.+
T Consensus 151 l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 151 LRAIQTMHLAQNPF 164 (220)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CCCCCEEEeCCCCc
Confidence 44444444444444
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.6e-18 Score=177.37 Aligned_cols=189 Identities=18% Similarity=0.190 Sum_probs=121.9
Q ss_pred hcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEecCCCc-------------CCC-CCcccCCCCCcCE
Q 047429 140 RNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQ-------------ITG-IPKSFGDMCCLKT 204 (466)
Q Consensus 140 ~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~-~~~~l~~l~~L~~ 204 (466)
..+++|+.|+ +.|.++. +| ..++.+++|+.|++++|. ..+ .|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-----Lp-------~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-----LQ-------SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-----HH-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHh-----hH-------HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhccc
Confidence 3456677777 7776654 45 566777777777776653 222 3445566666666
Q ss_pred EE-eeCCcCCCccchhhhhc-cccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeeccc
Q 047429 205 LK-IHDNILTAKLPELFLNF-SAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNH 282 (466)
Q Consensus 205 L~-L~~n~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~ 282 (466)
|+ ++.|.+.......+... +....+..|+.|++++|.++ .+|. +..+++|+.|+|++|.|
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-----------~lp~-~~~l~~L~~L~Ls~N~l------ 475 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-----------VLCH-LEQLLLVTHLDLSHNRL------ 475 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-----------SCCC-GGGGTTCCEEECCSSCC------
T ss_pred CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-----------CCcC-ccccccCcEeecCcccc------
Confidence 66 45544331111000000 11111134777888888777 5555 77777888888887554
Q ss_pred ccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhh
Q 047429 283 INGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKI 362 (466)
Q Consensus 283 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (466)
..+|..++.+++|++|+|++|.+++ +| .|+++++
T Consensus 476 --~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~------------------------------------------ 509 (567)
T 1dce_A 476 --RALPPALAALRCLEVLQASDNALEN-VD-GVANLPR------------------------------------------ 509 (567)
T ss_dssp --CCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSS------------------------------------------
T ss_pred --cccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCC------------------------------------------
Confidence 3667777778888888888888775 44 5555444
Q ss_pred ccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCC
Q 047429 363 TLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPS 419 (466)
Q Consensus 363 ~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 419 (466)
|+.|+|++|++++.. .|..+..+++|+.|+|++|.+++.+|.
T Consensus 510 ----L~~L~Ls~N~l~~~~-----------~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 510 ----LQELLLCNNRLQQSA-----------AIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp ----CCEEECCSSCCCSSS-----------TTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ----CcEEECCCCCCCCCC-----------CcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 499999999999421 167789999999999999999966554
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.6e-16 Score=167.61 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=100.8
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+..|++|+|++|.+. .+|..+..+ ++|++|+|++|.++ .+|. .|+++++|+.|+ +.|.++. +|
T Consensus 223 l~~L~~L~Ls~n~l~-~l~~~~~~l-~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-----lp------- 286 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NISANIFKY-DFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLTS-----LP------- 286 (727)
T ss_dssp CCCCCEEECTTSCCS-CCCGGGGGC-CSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCSS-----CC-------
T ss_pred CCCCcEEECCCCCCC-CCChhhcCC-CCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCCc-----cC-------
Confidence 666666666666666 344444455 66677777776666 5565 666666677766 6666663 55
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..+..+++|++|+|++|.++.+|..|..+++|++|+|++|.+++.+|..+.... .....+++++|.++|.+|
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-----~~~~~l~l~~N~l~~~~p--- 358 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS-----VTGLIFYLRDNRPEIPLP--- 358 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH-----HHHHHHHHHHCCCCCCCC---
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcc-----hhhhHHhhccCcccCcCc---
Confidence 577888999999999999999999999999999999999999998888765430 113357888888875443
Q ss_pred ccccccCcccCCCCCCcEEeCCCCe-eeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQ-LWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~-l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
. .|+.|+++.|. +......+.+..+..+..+..+....+++|-+.
T Consensus 359 -------~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 359 -------H------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------C------C-----------------------------------------CCC
T ss_pred -------c------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 2 45556666541 101112333444445566667777788888764
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=5.4e-17 Score=155.42 Aligned_cols=266 Identities=14% Similarity=0.105 Sum_probs=146.2
Q ss_pred CcCCcEEeCCCccccccchHHHhhc-CCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc---cccc
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSY-HNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYR---SHSL 87 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~ 87 (466)
+++++.|+++++ +..... ..+.. +++|+.|||++|++..... ... . ++.++.+.+..|.+....-. ....
T Consensus 24 ~~~l~~L~l~g~-i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~-~~~--~-~~~~~~~~~~~~~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDF-RHLRDEFPSLKVLDISNAEIKMYSG-KAG--T-YPNGKFYIYMANFVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHH-HHHHHSCTTCCEEEEEEEEECCEEE-SSS--S-SGGGCCEEECTTEECTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHH-HHHHHhhccCeEEecCcceeEEecC-ccc--c-ccccccccccccccCHHHhcccccccc
Confidence 566888998865 333333 45555 8889999999999872210 000 0 22233344444422211000 0011
Q ss_pred ccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-ccccc----ccccccCC
Q 047429 88 VNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYI----TGISKCSL 162 (466)
Q Consensus 88 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l----~~~~~~~l 162 (466)
.+ +++|+++++.+ .++.+...+|.++ ++|+.+++++|.+....+. .|.++.++..+. ..... ..+ -
T Consensus 98 ~g--~~~L~~l~L~~-~i~~I~~~aF~~~-~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i----~ 168 (329)
T 3sb4_A 98 KG--KQTLEKVILSE-KIKNIEDAAFKGC-DNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRW----E 168 (329)
T ss_dssp EE--CTTCCC-CBCT-TCCEECTTTTTTC-TTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTT----T
T ss_pred cc--cCCCcEEECCc-cccchhHHHhhcC-cccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccc----c
Confidence 12 45666666666 5655555566666 6666666666665533333 555555555554 22110 110 0
Q ss_pred CccccCccccccCCCcc--------------------------CEEecCCCcCCC-CCcccCCCCCcCEEEeeCCcCCCc
Q 047429 163 PITLVRPKYAFSNVTSL--------------------------MDLDLSKNQITG-IPKSFGDMCCLKTLKIHDNILTAK 215 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L--------------------------~~L~Ls~n~l~~-~~~~l~~l~~L~~L~L~~n~l~~~ 215 (466)
. .+|..+..| ..+.+.++-... .......+++|+.+++++|+++..
T Consensus 169 ~-------~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 169 H-------FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp T-------SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred c-------cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 0 122223333 333332221100 000011267788888888777766
Q ss_pred cchhhhhccccccccccceEecCCccccccCCCCcccccccC-cccCCCCCCc-EEeCCCCeeeeecccccccCCCCCCC
Q 047429 216 LPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLV-ELDLESNQLWLRFNHINGSATPKLCS 293 (466)
Q Consensus 216 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~-~L~L~~n~l~l~~n~~~~~~~~~~~~ 293 (466)
....|... .+|+.+++.+| ++ .++ .+|.++++|+ .+++.+ .++...+.+|.+
T Consensus 242 ~~~aF~~~------~~L~~l~l~~n-i~-----------~I~~~aF~~~~~L~~~l~l~~--------~l~~I~~~aF~~ 295 (329)
T 3sb4_A 242 PDFTFAQK------KYLLKIKLPHN-LK-----------TIGQRVFSNCGRLAGTLELPA--------SVTAIEFGAFMG 295 (329)
T ss_dssp CTTTTTTC------TTCCEEECCTT-CC-----------EECTTTTTTCTTCCEEEEECT--------TCCEECTTTTTT
T ss_pred cHhhhhCC------CCCCEEECCcc-cc-----------eehHHHhhCChhccEEEEEcc--------cceEEchhhhhC
Confidence 66665554 56888888776 55 333 3577888888 888875 223344577888
Q ss_pred CCCccEEEccCCCCCCCchhhhhhhhhhhhcC
Q 047429 294 SPMLQVLDFSHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 294 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
|++|+.++++.|.++.+.+.+|.++++|+.++
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 88888888888888877777888888876553
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2e-15 Score=129.62 Aligned_cols=98 Identities=22% Similarity=0.275 Sum_probs=57.0
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCch-hhhhhhhhhhhcCCCCceeeeeeecc
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP-TCLNNLSAMVQNGSSNVIVEYRIQLI 338 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~n~~~~~~~~~~ 338 (466)
+..+++|++|++++|. +++.+|..+..+++|++|++++|.+++..+ ..+..
T Consensus 67 ~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~--------------------- 118 (168)
T 2ell_A 67 LPKLPKLKKLELSENR-------IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK--------------------- 118 (168)
T ss_dssp CCCCSSCCEEEEESCC-------CCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSS---------------------
T ss_pred hccCCCCCEEECcCCc-------CchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhc---------------------
Confidence 4455566666666533 333345555556777777777777764321 33333
Q ss_pred CCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCC
Q 047429 339 DDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
+++|++|++++|.+++ +|... ...+..+++|++|++++|.+. ++|
T Consensus 119 -------------------------l~~L~~L~l~~N~l~~-~~~~~--------~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 119 -------------------------LECLKSLDLFNCEVTN-LNDYR--------ESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp -------------------------CSCCCEEECCSSGGGT-STTHH--------HHHHTTCSSCCEETTEETTSC-BCC
T ss_pred -------------------------CCCCCEEEeeCCcCcc-hHHHH--------HHHHHhCccCcEecCCCCChh-hcc
Confidence 3344778888887772 22100 014677788888888888876 566
Q ss_pred CC
Q 047429 419 SS 420 (466)
Q Consensus 419 ~~ 420 (466)
++
T Consensus 164 ~~ 165 (168)
T 2ell_A 164 DS 165 (168)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=2.9e-15 Score=131.59 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=93.3
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccch-hhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPE-LFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
-+.+++++|.++.+|..+.. ++++|++++|.+++..+. .+..+ ++|++|++++|++++. .|
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l------~~L~~L~Ls~N~l~~~----------~~ 71 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRL------PHLVKLELKRNQLTGI----------EP 71 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGC------TTCCEEECCSSCCCCB----------CT
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccC------CCCCEEECCCCCCCCc----------CH
Confidence 37899999999888876644 899999999999877664 35444 6799999999998833 24
Q ss_pred cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 258 KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 258 ~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
..|..+++|++|+|++| ++++..+..+..+++|++|+|++|++++..|..|..+++|
T Consensus 72 ~~~~~l~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 72 NAFEGASHIQELQLGEN-------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp TTTTTCTTCCEEECCSC-------CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred hHcCCcccCCEEECCCC-------cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 56888999999999985 4556666778889999999999999988777777666555
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=8.8e-15 Score=128.48 Aligned_cols=130 Identities=21% Similarity=0.243 Sum_probs=107.4
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCc--ccCCCCCcCEEEeeCCcCCCccchhhhh
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK--SFGDMCCLKTLKIHDNILTAKLPELFLN 222 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 222 (466)
+.++ +.+.++. +| ..+. .++++|++++|.+++++. .+..+++|++|++++|.+++..|..+..
T Consensus 11 ~~l~~s~~~l~~-----ip-------~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----IP-------RDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSS-----CC-------SCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCc-----Cc-------cCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 5677 7777765 44 3332 389999999999999664 4899999999999999999888887776
Q ss_pred ccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEc
Q 047429 223 FSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDF 302 (466)
Q Consensus 223 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~L 302 (466)
+ ++|++|++++|++++.. |..|..+++|++|+|++| ++++..|..+..+++|++|+|
T Consensus 77 l------~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~L~~N-------~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 77 A------SHIQELQLGENKIKEIS----------NKMFLGLHQLKTLNLYDN-------QISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp C------TTCCEEECCSCCCCEEC----------SSSSTTCTTCCEEECCSS-------CCCEECTTSSTTCTTCCEEEC
T ss_pred c------ccCCEEECCCCcCCccC----------HHHhcCCCCCCEEECCCC-------cCCeeCHHHhhcCCCCCEEEe
Confidence 6 68999999999998432 345888999999999995 556777889999999999999
Q ss_pred cCCCCCCCch
Q 047429 303 SHNNISGMVP 312 (466)
Q Consensus 303 s~N~l~~~~p 312 (466)
++|.+.+..+
T Consensus 134 ~~N~l~c~c~ 143 (192)
T 1w8a_A 134 ASNPFNCNCH 143 (192)
T ss_dssp TTCCBCCSGG
T ss_pred CCCCccCcCc
Confidence 9999997655
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=126.51 Aligned_cols=116 Identities=24% Similarity=0.291 Sum_probs=63.3
Q ss_pred CEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcc
Q 047429 180 MDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQ 259 (466)
Q Consensus 180 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~ 259 (466)
+.+++++|.++.+|..+. ++|++|++++|.++ .+|..+..+ ++|+.|++++|.+++.. +..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l------~~L~~L~Ls~N~i~~i~----------~~~ 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNY------KHLTLIDLSNNRISTLS----------NQS 73 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGC------TTCCEEECCSSCCCCCC----------TTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcc------cCCCEEECCCCcCCEeC----------HhH
Confidence 567777777777665443 46667777777665 333444333 45666666666665211 123
Q ss_pred cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 260 FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 260 ~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
|..+++|++|+|++| .+++..+..|..+++|++|+|++|.+++..+..|..+++|
T Consensus 74 f~~l~~L~~L~Ls~N-------~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 74 FSNMTQLLTLILSYN-------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp TTTCTTCCEEECCSS-------CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred ccCCCCCCEEECCCC-------ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 555666666666653 3333444455556666666666666654444444443333
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=8.1e-15 Score=125.78 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=73.9
Q ss_pred CCCCCEEEcCCCCCC--CCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhc
Q 047429 64 LPSLRELDLSSSAPP--KINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRN 141 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~ 141 (466)
.++|++|++++|.++ .++. .+.. +++|++|++++|.+++. ..+..+ ++|++|++++|.+.+..|. .+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~---~~~~--l~~L~~L~l~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l~~~~~~-~~~- 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG---LTAE--FVNLEFLSLINVGLISV--SNLPKL-PKLKKLELSENRIFGGLDM-LAE- 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS---CCGG--GGGCCEEEEESSCCCCC--SSCCCC-SSCCEEEEESCCCCSCCCH-HHH-
T ss_pred cccCCEEECCCCCCChhhHHH---HHHh--CCCCCEEeCcCCCCCCh--hhhccC-CCCCEEECcCCcCchHHHH-HHh-
Confidence 456777777777766 3322 3444 66777777777776654 555666 6777777777776654444 333
Q ss_pred CCcccccccccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCC--cccCCCCCcCEEEeeCCcCCCccc--
Q 047429 142 MTSLASLTSLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIP--KSFGDMCCLKTLKIHDNILTAKLP-- 217 (466)
Q Consensus 142 l~~L~~L~~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~l~~l~~L~~L~L~~n~l~~~~~-- 217 (466)
.+++|++|++++|.+++++ ..+..+++|++|++++|.+++..+
T Consensus 93 ---------------------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 139 (168)
T 2ell_A 93 ---------------------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139 (168)
T ss_dssp ---------------------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH
T ss_pred ---------------------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH
Confidence 3445555555555555543 445555555555555555554433
Q ss_pred -hhhhhccccccccccceEecCCcccc
Q 047429 218 -ELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 218 -~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
..+..+ ++|+.|++++|.+.
T Consensus 140 ~~~~~~l------~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 140 ESVFKLL------PQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHTTC------SSCCEETTEETTSC
T ss_pred HHHHHhC------ccCcEecCCCCChh
Confidence 222222 34555555555554
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=4.3e-15 Score=142.10 Aligned_cols=248 Identities=15% Similarity=0.111 Sum_probs=156.6
Q ss_pred CcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcC--------CCCCCEEEcCCCCCCCCCcc
Q 047429 12 LEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITG--------LPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 12 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~ 83 (466)
+++|+.|||++|++..... .-..++.++.+.+..+.+ +...+.+ +++|+.++|.. .++.+..
T Consensus 48 l~~L~~LdLs~n~i~~~~~--~~~~~~~~~~~~~~~~~I------~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~- 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSG--KAGTYPNGKFYIYMANFV------PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED- 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEE--SSSSSGGGCCEEECTTEE------CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT-
T ss_pred hccCeEEecCcceeEEecC--cccccccccccccccccc------CHHHhcccccccccccCCCcEEECCc-cccchhH-
Confidence 7889999999999882111 011122245555555533 2234454 77888888877 6666665
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCcc----ccCCChhhhhcCCcccc-cc-cc------
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQL----QGPTPDYAFRNMTSLAS-LT-SL------ 151 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l----~~~~~~~~~~~l~~L~~-L~-~~------ 151 (466)
.+|.. +++|++++++.|.+..+.+.+|... .++..+.+..+.. ...... .|.++..|+. +. ..
T Consensus 118 -~aF~~--~~~L~~l~l~~n~i~~i~~~aF~~~-~~l~~l~~~~~~~~~~~~~i~~~-~f~~~~~L~~~i~~~~~~~l~~ 192 (329)
T 3sb4_A 118 -AAFKG--CDNLKICQIRKKTAPNLLPEALADS-VTAIFIPLGSSDAYRFKNRWEHF-AFIEGEPLETTIQVGAMGKLED 192 (329)
T ss_dssp -TTTTT--CTTCCEEEBCCSSCCEECTTSSCTT-TCEEEECTTCTHHHHTSTTTTTS-CEEESCCCEEEEEECTTCCHHH
T ss_pred -HHhhc--CcccceEEcCCCCccccchhhhcCC-CceEEecCcchhhhhcccccccc-ccccccccceeEEecCCCcHHH
Confidence 56767 7888888888887776666677766 6666666555321 111111 3444444441 11 00
Q ss_pred ---------cccccccccC-CCccccCccccccCCCccCEEecCCCcCCCCCc-ccCCCCCcCEEEeeCCcCCCccchhh
Q 047429 152 ---------NYITGISKCS-LPITLVRPKYAFSNVTSLMDLDLSKNQITGIPK-SFGDMCCLKTLKIHDNILTAKLPELF 220 (466)
Q Consensus 152 ---------n~l~~~~~~~-l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 220 (466)
..+....... +.. .........+++|+.+++++|.++.++. +|.++++|+.+++.+| ++...+..|
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 193 EIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred HHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 0000000000 000 0000001237899999999999999765 7999999999999998 776666666
Q ss_pred hhccccccccccc-eEecCCccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCcc
Q 047429 221 LNFSAGCAKKSLQ-SFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQ 298 (466)
Q Consensus 221 ~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~ 298 (466)
... .+|+ .+++.+ .++ .++ .+|.+|++|+.+++++|. +....+.+|.++++|+
T Consensus 270 ~~~------~~L~~~l~l~~-~l~-----------~I~~~aF~~c~~L~~l~l~~n~-------i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 270 SNC------GRLAGTLELPA-SVT-----------AIEFGAFMGCDNLRYVLATGDK-------ITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTC------TTCCEEEEECT-TCC-----------EECTTTTTTCTTEEEEEECSSC-------CCEECTTTTCTTCCCC
T ss_pred hCC------hhccEEEEEcc-cce-----------EEchhhhhCCccCCEEEeCCCc-------cCccchhhhcCCcchh
Confidence 655 6799 999998 666 443 569999999999998854 4555567899999999
Q ss_pred EEEc
Q 047429 299 VLDF 302 (466)
Q Consensus 299 ~L~L 302 (466)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 9864
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.7e-14 Score=119.04 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=96.3
Q ss_pred cCCcCCcEEeCCCcccc-ccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 10 ISLEDLQSINIGLNAIR-VRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 10 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
...+++++|++++|.++ +..+ ..+..+++|++|++++|.++.. ..+.. +++|++|++++|.+++..+ ..+.
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~-l~~L~~L~Ls~n~i~~~~~--~~~~ 85 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI----ANLPK-LNKLKKLELSDNRVSGGLE--VLAE 85 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC----TTCCC-CTTCCEEECCSSCCCSCTH--HHHH
T ss_pred CCCccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc----hhhhc-CCCCCEEECCCCcccchHH--HHhh
Confidence 34578889999999887 4555 6678888899999999988775 13334 8889999999998887544 4555
Q ss_pred cCCCCCccEEEcCCCCCCch-hhhhhhcccCCCcEEEccCCccccCCC---hhhhhcCCcccccc
Q 047429 89 NSSSSSLTHLHLSLCGLSNS-AYHCLSHISKSLVYLDLSNNQLQGPTP---DYAFRNMTSLASLT 149 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~ 149 (466)
. +++|++|++++|.+++. .+..+..+ ++|++|++++|.+++..+ . .+..+++|+.|+
T Consensus 86 ~--l~~L~~L~ls~N~i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~L~~L~ 146 (149)
T 2je0_A 86 K--CPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYREN-VFKLLPQLTYLD 146 (149)
T ss_dssp H--CTTCCEEECTTSCCCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHH-HHHHCTTCCEET
T ss_pred h--CCCCCEEECCCCcCCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHH-HHHHCCCccccc
Confidence 6 78899999999988864 34677787 889999999988886554 3 566666666665
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=1.2e-14 Score=122.03 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=92.9
Q ss_pred CCccCEEecCCCcCC--CCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccc
Q 047429 176 VTSLMDLDLSKNQIT--GIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELD 253 (466)
Q Consensus 176 l~~L~~L~Ls~n~l~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~ 253 (466)
.++|++|++++|.++ .+|..+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l------~~L~~L~Ls~n~i~~~-------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL------NKLKKLELSDNRVSGG-------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC------TTCCEEECCSSCCCSC--------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC------CCCCEEECCCCcccch--------
Confidence 467888888888887 4777778888888888888888765 333333 5788888888888732
Q ss_pred cccCcccCCCCCCcEEeCCCCeeeeeccccccc-CCCCCCCCCCccEEEccCCCCCCCch---hhhhhhhhhhhcCC
Q 047429 254 GTFPKQFCRPSSLVELDLESNQLWLRFNHINGS-ATPKLCSSPMLQVLDFSHNNISGMVP---TCLNNLSAMVQNGS 326 (466)
Q Consensus 254 ~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~l~~ 326 (466)
+|..+..+++|++|++++|.+ ++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.|+.
T Consensus 80 --~~~~~~~l~~L~~L~ls~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 80 --LEVLAEKCPNLTHLNLSGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp --THHHHHHCTTCCEEECTTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred --HHHHhhhCCCCCEEECCCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 455566688888888888654 331 23667888888888888888887665 57888888877764
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.6e-13 Score=118.79 Aligned_cols=117 Identities=16% Similarity=0.279 Sum_probs=71.6
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC-
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP- 257 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp- 257 (466)
.+.++++++.++.+|..+. ++|++|++++|++++..+..+..+ ++|++|++++|.++ .+|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~-----------~~~~ 69 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKL------TQLTKLSLSQNQIQ-----------SLPD 69 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCSEEECCSSCCC-----------CCCT
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCc------ccccEEECCCCcce-----------EeCh
Confidence 4566777777766665432 567777777777765555544443 46777777777776 333
Q ss_pred cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhh
Q 047429 258 KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAM 321 (466)
Q Consensus 258 ~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 321 (466)
..+..+++|++|++++|. +++..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus 70 ~~~~~l~~L~~L~l~~N~-------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENK-------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hHccCCCccCEEECCCCC-------ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 235667777777777743 344444456677777777777777775555444444444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=1.7e-13 Score=118.52 Aligned_cols=133 Identities=21% Similarity=0.338 Sum_probs=103.0
Q ss_pred CcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeee
Q 047429 201 CLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLR 279 (466)
Q Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~ 279 (466)
+.+.+++++++++...... +++|++|++++|+++ .+| ..+..+++|++|++++|.+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---------~~~l~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l--- 64 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---------PSSATRLELESNKLQ-----------SLPHGVFDKLTQLTKLSLSQNQI--- 64 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---------CTTCSEEECCSSCCC-----------CCCTTTTTTCTTCSEEECCSSCC---
T ss_pred CCCEEEecCCCCccCCCCC---------CCCCcEEEeCCCccc-----------EeCHHHhcCcccccEEECCCCcc---
Confidence 4678999999987544321 257999999999998 333 3478899999999999544
Q ss_pred cccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccch
Q 047429 280 FNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSI 359 (466)
Q Consensus 280 ~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (466)
++..+..+..+++|++|++++|.+++..+..|.++++|
T Consensus 65 ----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------------------------------------- 102 (177)
T 2o6r_A 65 ----QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL-------------------------------------- 102 (177)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------
T ss_pred ----eEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc--------------------------------------
Confidence 44555667899999999999999998777666666555
Q ss_pred hhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCC
Q 047429 360 YKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIP 418 (466)
Q Consensus 360 ~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 418 (466)
++|++++|+++ .+| +..+..+++|++|++++|.+.+..|
T Consensus 103 --------~~L~l~~N~l~-~~~-----------~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 103 --------KELALDTNQLK-SVP-----------DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp --------CEEECCSSCCS-CCC-----------TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --------CEEECcCCcce-EeC-----------HHHhcCCcccCEEEecCCCeeccCc
Confidence 89999999998 332 2236789999999999999986443
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=3.1e-13 Score=118.62 Aligned_cols=128 Identities=22% Similarity=0.251 Sum_probs=102.9
Q ss_pred cccc-cccccccccccCCCccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhcc
Q 047429 146 ASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFS 224 (466)
Q Consensus 146 ~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 224 (466)
+.++ +.+.++. +| ..+ .++|++|++++|.++.+|..|..+++|++|++++|.+++..+..|..+
T Consensus 13 ~~l~~~~~~l~~-----ip-------~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l- 77 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LP-------KGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM- 77 (193)
T ss_dssp TEEECTTSCCSS-----CC-------SCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC-
T ss_pred CEEEcCCCCCCc-----CC-------CCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC-
Confidence 4566 6777665 44 222 258999999999999999899999999999999999998888777666
Q ss_pred ccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccC
Q 047429 225 AGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSH 304 (466)
Q Consensus 225 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 304 (466)
++|++|++++|++++.. |..|..+++|++|+|++|.| ++..+..|..+++|+.|++++
T Consensus 78 -----~~L~~L~Ls~N~l~~i~----------~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 78 -----TQLLTLILSYNRLRCIP----------PRTFDGLKSLRLLSLHGNDI-------SVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp -----TTCCEEECCSSCCCBCC----------TTTTTTCTTCCEEECCSSCC-------CBCCTTTTTTCTTCCEEECCS
T ss_pred -----CCCCEEECCCCccCEeC----------HHHhCCCCCCCEEECCCCCC-------CeeChhhhhcCccccEEEeCC
Confidence 68999999999998332 24688999999999999655 444455688999999999999
Q ss_pred CCCCCC
Q 047429 305 NNISGM 310 (466)
Q Consensus 305 N~l~~~ 310 (466)
|.+...
T Consensus 136 N~~~C~ 141 (193)
T 2wfh_A 136 NPLYCD 141 (193)
T ss_dssp SCEECS
T ss_pred CCeecC
Confidence 998753
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=6.7e-14 Score=121.01 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=81.6
Q ss_pred CCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCee
Q 047429 197 GDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQL 276 (466)
Q Consensus 197 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l 276 (466)
.++++|++|++++|.++.. +. +... .++|+.|++++|.++ .+ ..+..+++|++|++++|.+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~-----~~~L~~L~Ls~N~l~-----------~~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGAT-----LDQFDAIDFSDNEIR-----------KL-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGG-----TTCCSEEECCSSCCC-----------EE-CCCCCCSSCCEEECCSSCC
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhc-----CCCCCEEECCCCCCC-----------cc-cccccCCCCCEEECCCCcc
Confidence 3445555555555555532 22 1111 125666666666666 22 3466777888888887544
Q ss_pred eeecccccccCCCCCCCCCCccEEEccCCCCCCCchh--hhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeee
Q 047429 277 WLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPT--CLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWK 354 (466)
Q Consensus 277 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (466)
++..+..+..+++|++|++++|.++ .+|. .+..+
T Consensus 77 -------~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l------------------------------------ 112 (176)
T 1a9n_A 77 -------CRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASL------------------------------------ 112 (176)
T ss_dssp -------CEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGC------------------------------------
T ss_pred -------cccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcC------------------------------------
Confidence 3332333477888888888888885 3443 34443
Q ss_pred cccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCc
Q 047429 355 PIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 355 ~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~ 414 (466)
++|+.|++++|.++ .+|..-. ..+..+++|+.||+++|.+.
T Consensus 113 ----------~~L~~L~l~~N~i~-~~~~~~~--------~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 113 ----------KSLTYLCILRNPVT-NKKHYRL--------YVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ----------TTCCEEECCSSGGG-GSTTHHH--------HHHHHCTTCSEETTEECCHH
T ss_pred ----------CCCCEEEecCCCCC-CcHhHHH--------HHHHHCCccceeCCCcCCHH
Confidence 34488888888887 3332200 02677888888888888775
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=7e-14 Score=120.90 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=61.0
Q ss_pred ccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 178 SLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
+|++|++++|.++++ ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.++ .+|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~i~-----------~~~ 104 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL------PDLTELILTNNSLV-----------ELG 104 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC------TTCCEEECCSCCCC-----------CGG
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC------CCCCEEECCCCcCC-----------cch
Confidence 566666666666655 455666666666666666665444433433 45666666666665 344
Q ss_pred c--ccCCCCCCcEEeCCCCeeeeecccccccCCCC----CCCCCCccEEEccCCCCC
Q 047429 258 K--QFCRPSSLVELDLESNQLWLRFNHINGSATPK----LCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 258 ~--~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~----~~~l~~L~~L~Ls~N~l~ 308 (466)
. .+..+++|+.|++++|.+ ..+|.. +..+++|++||++.|.+.
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~i--------~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNPV--------TNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSGG--------GGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhHhhhcCCCCCEEEecCCCC--------CCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3 455666666666666444 233442 556666666666666554
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=9e-15 Score=141.85 Aligned_cols=91 Identities=25% Similarity=0.249 Sum_probs=56.5
Q ss_pred CCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCCcccccc-ccCCCCCccEEEcCCCCCCchhhhhh
Q 047429 37 HNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKINYRSHSL-VNSSSSSLTHLHLSLCGLSNSAYHCL 113 (466)
Q Consensus 37 l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l 113 (466)
.+.|++|+|++|.++... .+...+....++|++|+|++|.++.... ..+ .. +.+|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~--L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL--RTLLPV--FLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH--HHTHHH--HHTEEEEECCSSCCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH--HHHHHH--HHhccHhhcCCCCCCHHHHHHH
Confidence 466888888888876542 1111222223678888888887764332 122 22 5678888888888876554444
Q ss_pred h-----cccCCCcEEEccCCcccc
Q 047429 114 S-----HISKSLVYLDLSNNQLQG 132 (466)
Q Consensus 114 ~-----~l~~~L~~L~Ls~n~l~~ 132 (466)
. .. ++|++|+|++|.++.
T Consensus 147 ~~~L~~~~-~~L~~L~Ls~n~l~~ 169 (372)
T 3un9_A 147 RDLLLHDQ-CQITTLRLSNNPLTA 169 (372)
T ss_dssp HHHHHSTT-CCCCEEECCSSCCHH
T ss_pred HHHHHhcC-CccceeeCCCCCCCh
Confidence 3 23 678888888887764
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=2.4e-12 Score=126.02 Aligned_cols=253 Identities=11% Similarity=0.144 Sum_probs=181.9
Q ss_pred ccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccc
Q 047429 9 HISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLV 88 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 88 (466)
+..+..++.+.+.. .++.+.. ..|.++ +|+.+.+..+ ++.+ ....+.+ .+|+.+.+.. .++.+.. .+|.
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~-~aF~~~-~L~~i~l~~~-i~~I---~~~aF~~-~~L~~i~lp~-~l~~I~~--~aF~ 177 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPK-DAFRNS-QIAKVVLNEG-LKSI---GDMAFFN-STVQEIVFPS-TLEQLKE--DIFY 177 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECT-TTTTTC-CCSEEECCTT-CCEE---CTTTTTT-CCCCEEECCT-TCCEECS--STTT
T ss_pred EEecCCccEEEECC-ccCEehH-hhcccC-CccEEEeCCC-ccEE---CHHhcCC-CCceEEEeCC-CccEehH--HHhh
Confidence 34557778888864 4554555 677775 7999999876 6665 3344443 4799999986 5666665 5777
Q ss_pred cCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcccc
Q 047429 89 NSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLV 167 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~ 167 (466)
. +.+|+.+++..|.++.+...+|. . .+|+.+.+..+ +...... +|.++.+|+.+. ..+ ++.++.
T Consensus 178 ~--c~~L~~l~l~~n~l~~I~~~aF~-~-~~L~~l~lp~~-l~~I~~~-aF~~~~~L~~l~l~~~-l~~I~~-------- 242 (401)
T 4fdw_A 178 Y--CYNLKKADLSKTKITKLPASTFV-Y-AGIEEVLLPVT-LKEIGSQ-AFLKTSQLKTIEIPEN-VSTIGQ-------- 242 (401)
T ss_dssp T--CTTCCEEECTTSCCSEECTTTTT-T-CCCSEEECCTT-CCEECTT-TTTTCTTCCCEECCTT-CCEECT--------
T ss_pred C--cccCCeeecCCCcceEechhhEe-e-cccCEEEeCCc-hheehhh-HhhCCCCCCEEecCCC-ccCccc--------
Confidence 7 89999999999999877666776 5 78999999855 6644444 899999999998 433 443311
Q ss_pred CccccccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCC-----CccchhhhhccccccccccceEecCCcc
Q 047429 168 RPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILT-----AKLPELFLNFSAGCAKKSLQSFMLQNNM 241 (466)
Q Consensus 168 ~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 241 (466)
.+|.+ .+|+.+.+. +.++.+ ..+|.++++|+.+++.+|.+. ......|... ++|+.+.+.. .
T Consensus 243 ---~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c------~~L~~l~l~~-~ 310 (401)
T 4fdw_A 243 ---EAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC------PKLARFEIPE-S 310 (401)
T ss_dssp ---TTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC------TTCCEECCCT-T
T ss_pred ---ccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC------ccCCeEEeCC-c
Confidence 45666 789999994 556665 458899999999999988765 2333444333 5799999984 4
Q ss_pred ccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhh
Q 047429 242 LSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLS 319 (466)
Q Consensus 242 l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 319 (466)
++ .++ .+|.+|++|+.+.+..+ ++.....+|.++ +|+.+++.+|.+....+..|.+++
T Consensus 311 i~-----------~I~~~aF~~c~~L~~l~lp~~--------l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 311 IR-----------ILGQGLLGGNRKVTQLTIPAN--------VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CC-----------EECTTTTTTCCSCCEEEECTT--------CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred eE-----------EEhhhhhcCCCCccEEEECcc--------ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 65 443 45888999999999653 344556788888 999999999988766667777664
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.7e-12 Score=111.45 Aligned_cols=107 Identities=22% Similarity=0.299 Sum_probs=86.7
Q ss_pred ccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 231 SLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
+.+.+++++|.++ .+|..+. ++|++|+|++| .+++..|..|..+++|++|+|++|++++.
T Consensus 10 ~~~~l~~s~n~l~-----------~ip~~~~--~~l~~L~L~~N-------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 69 (170)
T 3g39_A 10 SGTTVDCSGKSLA-----------SVPTGIP--TTTQVLYLYDN-------QITKLEPGVFDRLTQLTRLDLDNNQLTVL 69 (170)
T ss_dssp ETTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSS-------CCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCEEEeCCCCcC-----------ccCccCC--CCCcEEEcCCC-------cCCccChhhhcCcccCCEEECCCCCcCcc
Confidence 4678999999998 6676553 78999999985 55666678899999999999999999987
Q ss_pred chhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhcc
Q 047429 311 VPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLI 390 (466)
Q Consensus 311 ~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~ 390 (466)
.+..|.++++| ++|+|++|++++ +|
T Consensus 70 ~~~~f~~l~~L----------------------------------------------~~L~L~~N~l~~-~~-------- 94 (170)
T 3g39_A 70 PAGVFDKLTQL----------------------------------------------TQLSLNDNQLKS-IP-------- 94 (170)
T ss_dssp CTTTTTTCTTC----------------------------------------------CEEECCSSCCCC-CC--------
T ss_pred ChhhccCCCCC----------------------------------------------CEEECCCCccCE-eC--------
Confidence 77777776666 899999999982 22
Q ss_pred CCCcccccCCCCCCeeeccCCcCcc
Q 047429 391 GKIPRSFSQLSHLGVVNLSNNNFSG 415 (466)
Q Consensus 391 ~~ip~~l~~l~~L~~L~Ls~N~l~~ 415 (466)
|..|..+++|++|+|++|.+++
T Consensus 95 ---~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 95 ---RGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp ---TTTTTTCTTCCEEECCSSCBCT
T ss_pred ---HHHhcCCCCCCEEEeCCCCCCC
Confidence 3358889999999999999874
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.5e-12 Score=110.74 Aligned_cols=104 Identities=27% Similarity=0.362 Sum_probs=84.1
Q ss_pred cceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 232 LQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
-+.+++++|.++ .+|..+. ++|++|+|++| ++.+..|..|..+++|++|+|++|++++..
T Consensus 14 ~~~l~~~~n~l~-----------~iP~~~~--~~L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 73 (174)
T 2r9u_A 14 QTLVNCQNIRLA-----------SVPAGIP--TDKQRLWLNNN-------QITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73 (174)
T ss_dssp SSEEECCSSCCS-----------SCCSCCC--TTCSEEECCSS-------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcEEEeCCCCCC-----------ccCCCcC--CCCcEEEeCCC-------CccccCHHHhcCCcCCCEEECCCCCCCccC
Confidence 467899999887 6676554 78999999985 456666788999999999999999999776
Q ss_pred hhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccC
Q 047429 312 PTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIG 391 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~ 391 (466)
+..|.++++| ++|+|++|+++
T Consensus 74 ~~~~~~l~~L----------------------------------------------~~L~L~~N~l~------------- 94 (174)
T 2r9u_A 74 TGVFDKLTQL----------------------------------------------TQLDLNDNHLK------------- 94 (174)
T ss_dssp TTTTTTCTTC----------------------------------------------CEEECCSSCCC-------------
T ss_pred hhHhCCcchh----------------------------------------------hEEECCCCccc-------------
Confidence 6666666555 88999999998
Q ss_pred CCcc-cccCCCCCCeeeccCCcCc
Q 047429 392 KIPR-SFSQLSHLGVVNLSNNNFS 414 (466)
Q Consensus 392 ~ip~-~l~~l~~L~~L~Ls~N~l~ 414 (466)
.+|. .|..+++|++|+|++|.+.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred eeCHHHhccccCCCEEEeCCCCcc
Confidence 3443 4888999999999999987
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=5.3e-12 Score=123.71 Aligned_cols=311 Identities=15% Similarity=0.152 Sum_probs=177.6
Q ss_pred ccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccc
Q 047429 7 GFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHS 86 (466)
Q Consensus 7 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 86 (466)
.+|.++++|+.+++..+ ++.+.. ..|.++.+|+.+++..+ ++.+ ....+.++++|+.+.+..+ +..... .+
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~-~aF~~c~~L~~i~lp~~-l~~I---~~~aF~~c~~L~~i~~p~~-l~~i~~--~a 135 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGE-FAFENCSKLEIINIPDS-VKMI---GRCTFSGCYALKSILLPLM-LKSIGV--EA 135 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEE---CTTTTTTCTTCCCCCCCTT-CCEECT--TT
T ss_pred HHhhCCCCceEEEeCCC-ccCcch-hHhhCCCCCcEEEeCCC-ceEc---cchhhcccccchhhcccCc-eeeecc--ee
Confidence 46677788888888643 554544 66778888888888654 4444 2234444777777666544 232322 33
Q ss_pred cccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCcc
Q 047429 87 LVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPIT 165 (466)
Q Consensus 87 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~ 165 (466)
|.. +..+ ..... ..+......+|..+ ++|+.+.+.++... .... .|.++.+|+.+. ..+ ++.. -.
T Consensus 136 F~~--~~~~-~~~~~-~~~~~i~~~aF~~c-~~L~~i~l~~~~~~-I~~~-~F~~c~~L~~i~l~~~-~~~I----~~-- 201 (394)
T 4fs7_A 136 FKG--CDFK-EITIP-EGVTVIGDEAFATC-ESLEYVSLPDSMET-LHNG-LFSGCGKLKSIKLPRN-LKII----RD-- 201 (394)
T ss_dssp TTT--CCCS-EEECC-TTCCEECTTTTTTC-TTCCEEECCTTCCE-ECTT-TTTTCTTCCBCCCCTT-CCEE----CT--
T ss_pred eec--cccc-ccccC-ccccccchhhhccc-CCCcEEecCCccce-eccc-cccCCCCceEEEcCCC-ceEe----Cc--
Confidence 443 3222 22222 12223344567777 88999988765432 3333 788888888887 333 3322 11
Q ss_pred ccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
.+|.++..|+.+.+..+... +.+......+|+.+.+... ++......|... ..++.+.+..+...
T Consensus 202 -----~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~------~~l~~~~~~~~~~~-- 266 (394)
T 4fs7_A 202 -----YCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGC------TDLESISIQNNKLR-- 266 (394)
T ss_dssp -----TTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTC------SSCCEEEECCTTCE--
T ss_pred -----hhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceeccccccccc------ccceeEEcCCCcce--
Confidence 46777788887777655322 3333445567777777543 222222333222 45777777665443
Q ss_pred CCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcC
Q 047429 246 LPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNG 325 (466)
Q Consensus 246 ~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 325 (466)
.-...|..+..++.+....+.+ ....+..+.+|+.+.+..+ ++.+...+|.++++|+.+.
T Consensus 267 ---------i~~~~F~~~~~l~~~~~~~~~i----------~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 267 ---------IGGSLFYNCSGLKKVIYGSVIV----------PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp ---------ECSCTTTTCTTCCEEEECSSEE----------CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred ---------eeccccccccccceeccCceee----------ccccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 2223466677777776655322 2345666777777777644 5445556777777776665
Q ss_pred CCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCe
Q 047429 326 SSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGV 405 (466)
Q Consensus 326 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~ 405 (466)
+.+.+. .+....+.++.+|+.+++..| ++ .|+ ..+|.+|++|+.
T Consensus 327 lp~~v~-----------------------~I~~~aF~~c~~L~~i~lp~~-l~-~I~-----------~~aF~~C~~L~~ 370 (394)
T 4fs7_A 327 LPYLVE-----------------------EIGKRSFRGCTSLSNINFPLS-LR-KIG-----------ANAFQGCINLKK 370 (394)
T ss_dssp CCTTCC-----------------------EECTTTTTTCTTCCEECCCTT-CC-EEC-----------TTTBTTCTTCCE
T ss_pred eCCccc-----------------------EEhHHhccCCCCCCEEEECcc-cc-Eeh-----------HHHhhCCCCCCE
Confidence 433322 222334455677788877766 44 222 336788888888
Q ss_pred eeccCC
Q 047429 406 VNLSNN 411 (466)
Q Consensus 406 L~Ls~N 411 (466)
+++..+
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 888654
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=1e-11 Score=121.45 Aligned_cols=247 Identities=13% Similarity=0.170 Sum_probs=183.0
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
..+|.++ +|+.+++..+ ++.+.. ..|.++ +|+.+.+.. .+..+ ....+.++++|+.++++.|.++.++. .
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~-~aF~~~-~L~~i~lp~-~l~~I---~~~aF~~c~~L~~l~l~~n~l~~I~~--~ 198 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGD-MAFFNS-TVQEIVFPS-TLEQL---KEDIFYYCYNLKKADLSKTKITKLPA--S 198 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECT-TTTTTC-CCCEEECCT-TCCEE---CSSTTTTCTTCCEEECTTSCCSEECT--T
T ss_pred HhhcccC-CccEEEeCCC-ccEECH-HhcCCC-CceEEEeCC-CccEe---hHHHhhCcccCCeeecCCCcceEech--h
Confidence 4566665 7999999876 665655 678875 699999986 56665 33445559999999999999988776 4
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccccccccccccccCCCcc
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSLNYITGISKCSLPIT 165 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~n~l~~~~~~~l~~~ 165 (466)
.|. +.+|+.+.+..+ ++.+...+|.++ ++|+.+++..+ ++..... +|.+ .+|+.+.-.+.++.+ -.
T Consensus 199 aF~---~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~-aF~~-~~L~~i~lp~~i~~I----~~-- 264 (401)
T 4fdw_A 199 TFV---YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQE-AFRE-SGITTVKLPNGVTNI----AS-- 264 (401)
T ss_dssp TTT---TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTT-TTTT-CCCSEEEEETTCCEE----CT--
T ss_pred hEe---ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccc-cccc-CCccEEEeCCCccEE----Ch--
Confidence 454 579999999854 777777889998 99999999975 5534444 7777 678888722333333 11
Q ss_pred ccCccccccCCCccCEEecCCCcCC-----CC-CcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCC
Q 047429 166 LVRPKYAFSNVTSLMDLDLSKNQIT-----GI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQN 239 (466)
Q Consensus 166 ~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 239 (466)
.+|.++++|+.+++.+|.+. .+ +.+|.++++|+.+++.. .++......|... .+|+.+.+..
T Consensus 265 -----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c------~~L~~l~lp~ 332 (401)
T 4fdw_A 265 -----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN------RKVTQLTIPA 332 (401)
T ss_dssp -----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC------CSCCEEEECT
T ss_pred -----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC------CCccEEEECc
Confidence 68999999999999998776 34 35899999999999994 5776666666554 5799999966
Q ss_pred ccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCC-CccEEEccCCCCC
Q 047429 240 NMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSP-MLQVLDFSHNNIS 308 (466)
Q Consensus 240 n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~N~l~ 308 (466)
+ ++ .++ .+|.++ +|+.+++.+|.+ .......|..++ .++.|.+..+.+.
T Consensus 333 ~-l~-----------~I~~~aF~~~-~L~~l~l~~n~~-------~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VT-----------QINFSAFNNT-GIKEVKVEGTTP-------PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CC-----------EECTTSSSSS-CCCEEEECCSSC-------CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred c-cc-----------EEcHHhCCCC-CCCEEEEcCCCC-------cccccccccCCCCCccEEEeCHHHHH
Confidence 5 55 333 468889 999999999644 334456677774 7889988876643
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=5.4e-15 Score=130.55 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=79.8
Q ss_pred ccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVT 250 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 250 (466)
..+..+++|++|++++|.++++| .+..+++|++|++++|.++ .+|..+..+ ++|+.|++++|+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~------~~L~~L~L~~N~l~------- 106 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVA------DTLEELWISYNQIA------- 106 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH------HHCSEEEEEEEECC-------
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcC------CcCCEEECcCCcCC-------
Confidence 35566677777777777777766 6666777777777777776 344433333 45777777777776
Q ss_pred ccccccCcccCCCCCCcEEeCCCCeeeeecccccccCC--CCCCCCCCccEEEccCCCCCCCchh----------hhhhh
Q 047429 251 ELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSAT--PKLCSSPMLQVLDFSHNNISGMVPT----------CLNNL 318 (466)
Q Consensus 251 ~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l 318 (466)
.+| .+..+++|++|++++|++ + .++ ..+..+++|++|++++|.+++..|. .+..+
T Consensus 107 ----~l~-~~~~l~~L~~L~l~~N~i-------~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 107 ----SLS-GIEKLVNLRVLYMSNNKI-------T-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp ----CHH-HHHHHHHSSEEEESEEEC-------C-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred ----cCC-ccccCCCCCEEECCCCcC-------C-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 333 355666777777777554 2 222 3466677777777777777655443 26666
Q ss_pred hhhhhcC
Q 047429 319 SAMVQNG 325 (466)
Q Consensus 319 ~~L~~l~ 325 (466)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 6666655
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=3e-14 Score=125.78 Aligned_cols=108 Identities=23% Similarity=0.244 Sum_probs=61.8
Q ss_pred CCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCcc
Q 047429 92 SSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPK 170 (466)
Q Consensus 92 l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~ 170 (466)
+++|++|++++|.+++ +| .+..+ ++|++|++++|.+. .+|. .+..+++|+.|+ +.|.+++.
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l-~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L~L~~N~l~~l------------- 108 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGM-ENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASL------------- 108 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHH-TTCCEEEEEEEEEC-SCSS-HHHHHHHCSEEEEEEEECCCH-------------
T ss_pred CCCCCEEECCCCCCcc-cc-ccccC-CCCCEEECCCCCcc-cccc-hhhcCCcCCEEECcCCcCCcC-------------
Confidence 4555555555555543 22 44444 55555555555554 3343 444445555555 55554442
Q ss_pred ccccCCCccCEEecCCCcCCCCCc--ccCCCCCcCEEEeeCCcCCCccc
Q 047429 171 YAFSNVTSLMDLDLSKNQITGIPK--SFGDMCCLKTLKIHDNILTAKLP 217 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~~~~~ 217 (466)
..+..+++|++|++++|.++.++. .+..+++|++|++++|.+++..|
T Consensus 109 ~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 235556677777777777776443 56777777777777777765543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=7.2e-14 Score=135.46 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=48.0
Q ss_pred CCCCCEEEcCCCCCCCCCcccccccc---CCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccC
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVN---SSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGP 133 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~ 133 (466)
++.|++|++++|.++.... ..+.. ...++|++|+|++|.++......+....++|++|+|++|.++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~--~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC--TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH--HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred HhhCCEEEecCCCCCHHHH--HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 4689999999998876443 22222 01368999999999998665555543227899999999988744
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=2.2e-11 Score=104.39 Aligned_cols=109 Identities=23% Similarity=0.288 Sum_probs=91.7
Q ss_pred ccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccC
Q 047429 178 SLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFP 257 (466)
Q Consensus 178 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp 257 (466)
..+.+++++|.++.+|..+. ++|++|++++|.+++..+..+..+ ++|++|+|++|+++ .+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l------~~L~~L~Ls~N~l~-----------~l~ 70 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRL------TQLTRLDLDNNQLT-----------VLP 70 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCSEEECCSSCCC-----------CCC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCc------ccCCEEECCCCCcC-----------ccC
Confidence 46789999999999988664 789999999999998888877766 68999999999998 444
Q ss_pred c-ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCch
Q 047429 258 K-QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVP 312 (466)
Q Consensus 258 ~-~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 312 (466)
. .|..+++|++|+|++|+| ++..+..|..+++|++|+|++|.+....+
T Consensus 71 ~~~f~~l~~L~~L~L~~N~l-------~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 71 AGVFDKLTQLTQLSLNDNQL-------KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred hhhccCCCCCCEEECCCCcc-------CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 3 478999999999999554 55555679999999999999999986643
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=2.9e-11 Score=104.03 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=89.9
Q ss_pred cCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc
Q 047429 179 LMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK 258 (466)
Q Consensus 179 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~ 258 (466)
-+.+++++|.++.+|..+. ++|++|++++|++++..|..+..+ ++|+.|+|++|+++ .+|.
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~-----------~i~~ 74 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHL------VNLQQLYFNSNKLT-----------AIPT 74 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC------TTCCEEECCSSCCC-----------CCCT
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCC------cCCCEEECCCCCCC-----------ccCh
Confidence 4789999999999988664 799999999999998888877766 68999999999998 5554
Q ss_pred c-cCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 259 Q-FCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 259 ~-~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
. |..+++|++|+|++|+| ++..+..+..+++|++|+|++|.+....
T Consensus 75 ~~~~~l~~L~~L~L~~N~l-------~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 75 GVFDKLTQLTQLDLNDNHL-------KSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTTTTCTTCCEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hHhCCcchhhEEECCCCcc-------ceeCHHHhccccCCCEEEeCCCCccccc
Confidence 3 68899999999999655 4444455899999999999999998543
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=7.1e-11 Score=115.68 Aligned_cols=299 Identities=15% Similarity=0.179 Sum_probs=197.3
Q ss_pred ccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCC
Q 047429 25 IRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCG 104 (466)
Q Consensus 25 i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 104 (466)
++.+.. .+|.++.+|+.+.+..+ ++.+ ....+.++++|+.+++..+ ++.+.. .++.. +.+|+.+.+..+
T Consensus 59 VtsIg~-~AF~~c~~L~~i~lp~~-i~~I---~~~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~--c~~L~~i~~p~~- 127 (394)
T 4fs7_A 59 VVSIGY-AAFQGCRKVTEIKIPST-VREI---GEFAFENCSKLEIINIPDS-VKMIGR--CTFSG--CYALKSILLPLM- 127 (394)
T ss_dssp EEEECT-TTTTTCTTEEEEECCTT-CCEE---CTTTTTTCTTCCEECCCTT-CCEECT--TTTTT--CTTCCCCCCCTT-
T ss_pred EeEhHH-HHhhCCCCceEEEeCCC-ccCc---chhHhhCCCCCcEEEeCCC-ceEccc--hhhcc--cccchhhcccCc-
Confidence 444554 77899999999999754 6665 3345555999999999765 555554 56777 888888777654
Q ss_pred CCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCCccccCccccccCCCccCEEe
Q 047429 105 LSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLPITLVRPKYAFSNVTSLMDLD 183 (466)
Q Consensus 105 l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~ 183 (466)
+......+|... ..++....... ...... +|.++.+|+.+. ..+ +... -. .+|..+.+|+.++
T Consensus 128 l~~i~~~aF~~~-~~~~~~~~~~~--~~i~~~-aF~~c~~L~~i~l~~~-~~~I----~~-------~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 128 LKSIGVEAFKGC-DFKEITIPEGV--TVIGDE-AFATCESLEYVSLPDS-METL----HN-------GLFSGCGKLKSIK 191 (394)
T ss_dssp CCEECTTTTTTC-CCSEEECCTTC--CEECTT-TTTTCTTCCEEECCTT-CCEE----CT-------TTTTTCTTCCBCC
T ss_pred eeeecceeeecc-cccccccCccc--cccchh-hhcccCCCcEEecCCc-ccee----cc-------ccccCCCCceEEE
Confidence 444555667665 44333333322 223333 889999999888 332 2222 11 5788999999999
Q ss_pred cCCCcCCCCC-cccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccccCCCCccccccc-CcccC
Q 047429 184 LSKNQITGIP-KSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTF-PKQFC 261 (466)
Q Consensus 184 Ls~n~l~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~l-p~~~~ 261 (466)
+..+ ++.++ .+|.++..|+.+.+..+... +...+... .+|+.+.+.... + .+ ...+.
T Consensus 192 l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~------~~l~~i~ip~~~-~-----------~i~~~~f~ 250 (394)
T 4fs7_A 192 LPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK------TGVKNIIIPDSF-T-----------ELGKSVFY 250 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT------CCCCEEEECTTC-C-----------EECSSTTT
T ss_pred cCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc------CCCceEEECCCc-e-----------eccccccc
Confidence 9876 55543 47888999998888766432 12211111 358888776442 2 22 24578
Q ss_pred CCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeeccCCC
Q 047429 262 RPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDP 341 (466)
Q Consensus 262 ~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~ 341 (466)
.+..++.+.+..+.. ......|..+..++.+....+.+. ..+|..+.+|+.+.+.+.+
T Consensus 251 ~~~~l~~~~~~~~~~--------~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~i----------- 308 (394)
T 4fs7_A 251 GCTDLESISIQNNKL--------RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDSV----------- 308 (394)
T ss_dssp TCSSCCEEEECCTTC--------EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTTC-----------
T ss_pred ccccceeEEcCCCcc--------eeeccccccccccceeccCceeec---ccccccccccccccccccc-----------
Confidence 899999999987533 345567888999999988766533 3567788888665533322
Q ss_pred CcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcCcccCCCC
Q 047429 342 EFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNFSGKIPSS 420 (466)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 420 (466)
..+....+..+.+|+.++|.++ ++ .|+ ..+|.+|++|+.+++..| ++ .|++.
T Consensus 309 ------------~~I~~~aF~~c~~L~~i~lp~~-v~-~I~-----------~~aF~~c~~L~~i~lp~~-l~-~I~~~ 360 (394)
T 4fs7_A 309 ------------KFIGEEAFESCTSLVSIDLPYL-VE-EIG-----------KRSFRGCTSLSNINFPLS-LR-KIGAN 360 (394)
T ss_dssp ------------CEECTTTTTTCTTCCEECCCTT-CC-EEC-----------TTTTTTCTTCCEECCCTT-CC-EECTT
T ss_pred ------------ceechhhhcCCCCCCEEEeCCc-cc-EEh-----------HHhccCCCCCCEEEECcc-cc-EehHH
Confidence 2233445567889999999765 55 222 447999999999999887 65 66654
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=1.6e-09 Score=106.06 Aligned_cols=110 Identities=17% Similarity=0.216 Sum_probs=56.2
Q ss_pred ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhhhcCCCCceeeeeeecc
Q 047429 259 QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMVQNGSSNVIVEYRIQLI 338 (466)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~ 338 (466)
+|..++.|+.+.+..+.. ......|.+++.|+.+.+. +.++.+...+|.++.+|+.+.+.+.+.
T Consensus 260 aF~~c~~L~~i~lp~~~~--------~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~------- 323 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV--------SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGIT------- 323 (394)
T ss_dssp TTTTCSSCCEEECCTTCC--------EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCC-------
T ss_pred eeeecccccEEecccccc--------eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCccc-------
Confidence 455666666666654221 2333455566666666664 334444445666666665554332221
Q ss_pred CCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhhccCCCcccccCCCCCCeeeccCCcC
Q 047429 339 DDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSLLIGKIPRSFSQLSHLGVVNLSNNNF 413 (466)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l~~~~ip~~l~~l~~L~~L~Ls~N~l 413 (466)
.+....+.++.+|+.+.|..+ ++ .|+ ..+|.+|++|+.+++.+|..
T Consensus 324 ----------------~I~~~aF~~C~~L~~i~ip~s-v~-~I~-----------~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 324 ----------------QILDDAFAGCEQLERIAIPSS-VT-KIP-----------ESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp ----------------EECTTTTTTCTTCCEEEECTT-CC-BCC-----------GGGGTTCTTCCEEEESSCHH
T ss_pred ----------------EehHhHhhCCCCCCEEEECcc-cC-EEh-----------HhHhhCCCCCCEEEECCcee
Confidence 122233344556666666543 33 222 23566666666666666543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=2.3e-10 Score=109.94 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=43.5
Q ss_pred eEecCCc-cccccCCCCcccccccCcccCCCCCCcEEeCCC-CeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 234 SFMLQNN-MLSGSLPGVTELDGTFPKQFCRPSSLVELDLES-NQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 234 ~L~L~~n-~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~-n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
.++++++ .++ .+|. +..+++|+.|+|++ |.| ++..+..|..+++|++|+|++|.|++..
T Consensus 12 ~v~~~~~n~l~-----------~ip~-l~~~~~L~~L~l~~~n~l-------~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 12 GLRCTRDGALD-----------SLHH-LPGAENLTELYIENQQHL-------QHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CEECCSSCCCT-----------TTTT-SCSCSCCSEEECCSCSSC-------CEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred EEEcCCCCCCC-----------ccCC-CCCCCCeeEEEccCCCCC-------CCcChhHhccccCCCEEECCCCccceeC
Confidence 4566665 666 5666 66667777777764 433 3444456677777777777777777666
Q ss_pred hhhhhhhhhh
Q 047429 312 PTCLNNLSAM 321 (466)
Q Consensus 312 p~~~~~l~~L 321 (466)
|..|.++++|
T Consensus 73 ~~~~~~l~~L 82 (347)
T 2ifg_A 73 PDAFHFTPRL 82 (347)
T ss_dssp TTGGGSCSCC
T ss_pred HHHhcCCcCC
Confidence 6666655555
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=1.4e-08 Score=99.20 Aligned_cols=314 Identities=14% Similarity=0.149 Sum_probs=157.9
Q ss_pred cccCCc-CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC---CCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcc
Q 047429 8 FHISLE-DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD---LREATDWLQVVITGLPSLRELDLSSSAPPKINYR 83 (466)
Q Consensus 8 ~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 83 (466)
+|.+++ .|+.+.+..+ ++.+.. .+|.++.+|+.+.+..+. ++.+ ....+.++.+|+.+.+..+ ++.+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~-~AF~~C~~L~~i~~~~n~p~~l~~I---g~~aF~~c~~L~~i~~~~~-~~~I~~- 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGS-NAFYNCTSLKRVTIQDNKPSCVKKI---GRQAFMFCSELTDIPILDS-VTEIDS- 130 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECT-TTTTTCTTCCEEEEGGGCCCCCCEE---CTTTTTTCTTCCBCGGGTT-CSEECT-
T ss_pred hccCCCCcCEEEEECCC-eeEEhH-HHhhCCccCceEeecCCCCCeeeEe---chhhchhcccceeeccCCc-cceehh-
Confidence 344442 3666666432 443444 556666666666665543 2222 2233333556665555433 233322
Q ss_pred ccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCC
Q 047429 84 SHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSL 162 (466)
Q Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l 162 (466)
.++.. +.+|+.+.+..+ +.......|... ..|+.+.+..+ +...... +|.. ..|+.+. ..+ +... -
T Consensus 131 -~aF~~--c~~L~~i~lp~~-~~~I~~~~F~~c-~~L~~i~~~~~-~~~I~~~-aF~~-~~l~~i~ip~~-~~~i----~ 197 (394)
T 4gt6_A 131 -EAFHH--CEELDTVTIPEG-VTSVADGMFSYC-YSLHTVTLPDS-VTAIEER-AFTG-TALTQIHIPAK-VTRI----G 197 (394)
T ss_dssp -TTTTT--CTTCCEEECCTT-CCEECTTTTTTC-TTCCEEECCTT-CCEECTT-TTTT-CCCSEEEECTT-CCEE----C
T ss_pred -hhhhh--hcccccccccce-eeeecccceecc-cccccccccce-eeEeccc-cccc-cceeEEEECCc-cccc----c
Confidence 34444 566666666533 333334455555 56666666543 2212222 3432 3344444 111 1111 0
Q ss_pred CccccCccccccCCCccCEEecCCCcCCCCCcccC--------------CCCCcCEEEeeCCcCCCccchhhhhcccccc
Q 047429 163 PITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFG--------------DMCCLKTLKIHDNILTAKLPELFLNFSAGCA 228 (466)
Q Consensus 163 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~--------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 228 (466)
. .+|..+..++......+....+...+. ....+..+.+.. .++......| .++
T Consensus 198 ~-------~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF----~~c- 264 (394)
T 4gt6_A 198 T-------NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAF----DSC- 264 (394)
T ss_dssp T-------TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTT----TTC-
T ss_pred c-------chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEccccee----eec-
Confidence 0 345555566655554443332221111 111122222211 1111111222 222
Q ss_pred ccccceEecCCccccccCCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 229 KKSLQSFMLQNNMLSGSLPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 229 ~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
..|+.+.+..+..+ .-...|.+++.|+.+.+.. .+......+|.++.+|+.++|..+ ++
T Consensus 265 -~~L~~i~lp~~~~~-----------I~~~aF~~c~~L~~i~l~~--------~i~~I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 265 -AYLASVKMPDSVVS-----------IGTGAFMNCPALQDIEFSS--------RITELPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp -SSCCEEECCTTCCE-----------ECTTTTTTCTTCCEEECCT--------TCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred -ccccEEecccccce-----------ecCcccccccccccccCCC--------cccccCceeecCCCCcCEEEeCCc-cc
Confidence 45777777655432 1234588899999999974 333445578899999999999864 66
Q ss_pred CCchhhhhhhhhhhhcCCCCceeeeeeeccCCCCcccccceeeeeecccchhhhccCCCcEEECCCCcCCcCCcHHHHhh
Q 047429 309 GMVPTCLNNLSAMVQNGSSNVIVEYRIQLIDDPEFDYQDRALLVWKPIDSIYKITLGLPKSIDLSDNNLSGKIPEEITSL 388 (466)
Q Consensus 309 ~~~p~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~i~~l 388 (466)
.+...+|.++.+|+.+.+.+.+ ..+....+.++.+|+.+++.++...
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~sv-----------------------~~I~~~aF~~C~~L~~i~~~~~~~~---------- 370 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSSV-----------------------TKIPESAFSNCTALNNIEYSGSRSQ---------- 370 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTTC-----------------------CBCCGGGGTTCTTCCEEEESSCHHH----------
T ss_pred EehHhHhhCCCCCCEEEECccc-----------------------CEEhHhHhhCCCCCCEEEECCceee----------
Confidence 5667899999999776533322 2345556678899999999987543
Q ss_pred ccCCCcccccCCCCCCeeeccCCcC
Q 047429 389 LIGKIPRSFSQLSHLGVVNLSNNNF 413 (466)
Q Consensus 389 ~~~~ip~~l~~l~~L~~L~Ls~N~l 413 (466)
-.++..+..|+.+.+..|.+
T Consensus 371 -----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 371 -----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -----HHTCBCCCCC----------
T ss_pred -----hhhhhccCCCCEEEeCCCCE
Confidence 12467788899998887765
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=2.2e-09 Score=103.07 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=68.7
Q ss_pred EEecCCC-cCCCCCcccCCCCCcCEEEeeC-CcCCCccchhhhhccccccccccceEecCCccccccCCCCcccccccCc
Q 047429 181 DLDLSKN-QITGIPKSFGDMCCLKTLKIHD-NILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGSLPGVTELDGTFPK 258 (466)
Q Consensus 181 ~L~Ls~n-~l~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~~lp~ 258 (466)
.++++++ .++.+|. +..+++|++|+|++ |.+++..+..|..+ ++|+.|+|++|+|++.. |.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l------~~L~~L~l~~N~l~~~~----------~~ 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGL------GELRNLTIVKSGLRFVA----------PD 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSC------CCCSEEECCSSCCCEEC----------TT
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccc------cCCCEEECCCCccceeC----------HH
Confidence 4567766 6777777 77777777777775 77776666666555 56777777777777332 23
Q ss_pred ccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCC
Q 047429 259 QFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGM 310 (466)
Q Consensus 259 ~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 310 (466)
.|..+++|++|+|++|+| ++..+..+..++ |+.|+|.+|.+...
T Consensus 75 ~~~~l~~L~~L~l~~N~l-------~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNAL-------ESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp GGGSCSCCCEEECCSSCC-------SCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred HhcCCcCCCEEeCCCCcc-------ceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 467777777777777544 333333444444 77777777777643
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=7.7e-09 Score=99.32 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=60.9
Q ss_pred cCCcEEeCCCccccc-cc---h---HHHhhcCCCCcEEEccCCCCCC-----c--cchHHHHhcCCCCCCEEEcCCCCCC
Q 047429 13 EDLQSINIGLNAIRV-RK---F---DQWLSYHNKLTSLSLQGLDLRE-----A--TDWLQVVITGLPSLRELDLSSSAPP 78 (466)
Q Consensus 13 ~~L~~L~Ls~n~i~~-~~---~---~~~~~~l~~L~~L~Ls~n~l~~-----~--~~~~~~~~~~l~~L~~L~Ls~n~l~ 78 (466)
..++.|.+....+.+ .. . ..+...+++|+.|.+....... . ..+. .+...+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc
Confidence 456677776544431 11 0 1234467788888886653321 1 1123 33333788888888777311
Q ss_pred CCCccccccccCCCCCccEEEcCCCCCCchhhhhhh--cccCCCcEEEccC
Q 047429 79 KINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLS--HISKSLVYLDLSN 127 (466)
Q Consensus 79 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~L~~L~Ls~ 127 (466)
... .+ . +++|++|++..|.+.......+. .+ ++|++|+|+.
T Consensus 186 ~l~----~~-~--~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~~ 228 (362)
T 2ra8_A 186 SIG----KK-P--RPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLYV 228 (362)
T ss_dssp BCC----SC-B--CTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEEC
T ss_pred eec----cc-c--CCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEec
Confidence 111 11 2 67888888888887755545554 56 7888888753
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.69 E-value=7.5e-07 Score=86.39 Aligned_cols=273 Identities=9% Similarity=0.057 Sum_probs=127.1
Q ss_pred cccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCcccc
Q 047429 6 AGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRSH 85 (466)
Q Consensus 6 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 85 (466)
..++....+|+.+.+.. .++.+.. ..|.++.+|+.++|..+ ++.+ ....+.++ +|+.+.+..+ ++.+.. .
T Consensus 39 ~~~~~~~~~i~~v~ip~-~vt~Ig~-~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~~~-l~~I~~--~ 108 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNS-GITSIGE-ANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGMER-VKKFGD--Y 108 (379)
T ss_dssp STTGGGGGGCSEEEECT-TEEEECT-TTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEECTT-CCEECT--T
T ss_pred ccccccccCCEEEEeCC-CccChHH-HHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECCce-eeEecc--c
Confidence 34455556666666653 3444444 56777777777777543 4444 22333323 5666665443 333333 2
Q ss_pred ccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCChhhhhcCCcccccc-cccccccccccCCC-
Q 047429 86 SLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLT-SLNYITGISKCSLP- 163 (466)
Q Consensus 86 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-~~n~l~~~~~~~l~- 163 (466)
+|.. .+|+.+.+..+ +.......|.. .+++.+.+..+ ++..... .|..+..++... ..............
T Consensus 109 aF~~---~~L~~i~lp~~-~~~i~~~~F~~--~~l~~~~~~~~-v~~i~~~-~f~~~~~l~~~~~~~~~~~~~~~~~~~~ 180 (379)
T 4h09_A 109 VFQG---TDLDDFEFPGA-TTEIGNYIFYN--SSVKRIVIPKS-VTTIKDG-IGYKAENLEKIEVSSNNKNYVAENYVLY 180 (379)
T ss_dssp TTTT---CCCSEEECCTT-CCEECTTTTTT--CCCCEEEECTT-CCEECSC-TTTTCTTCCEEEECTTCSSEEEETTEEE
T ss_pred eecc---CCcccccCCCc-ccccccccccc--ceeeeeeccce-eeccccc-hhcccccccccccccccceeecccceec
Confidence 3333 35777776654 22233333433 24555544433 2222222 455555554443 21111000000000
Q ss_pred ccccCccccccCCCccCEEecCCCcCCCCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccc
Q 047429 164 ITLVRPKYAFSNVTSLMDLDLSKNQITGIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLS 243 (466)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 243 (466)
.........+.....+..+.+...........+..+.+|+.+.+..+ +.......|... ..|+.+.+..+ ++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~------~~L~~i~lp~~-v~ 252 (379)
T 4h09_A 181 NKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM------KALDEIAIPKN-VT 252 (379)
T ss_dssp ETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC------SSCCEEEECTT-CC
T ss_pred ccccceeccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCC------ccceEEEcCCC-cc
Confidence 00000001233333444444433221112334555666666666543 222223333222 34666666554 33
Q ss_pred ccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCchhhhhhhhhhh
Q 047429 244 GSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMVPTCLNNLSAMV 322 (466)
Q Consensus 244 ~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 322 (466)
.+. .+|.++.+|+.+.+..+ +.......|.++++|+.+++.++.++.+...+|.++.+|+
T Consensus 253 -----------~I~~~aF~~~~~l~~i~l~~~--------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 253 -----------SIGSFLLQNCTALKTLNFYAK--------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp -----------EECTTTTTTCTTCCEEEECCC--------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred -----------EeCccccceeehhcccccccc--------ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 222 34666777777776542 2223345667777777777777777655566777766663
Q ss_pred h
Q 047429 323 Q 323 (466)
Q Consensus 323 ~ 323 (466)
.
T Consensus 314 ~ 314 (379)
T 4h09_A 314 S 314 (379)
T ss_dssp E
T ss_pred E
Confidence 3
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1.9e-09 Score=93.56 Aligned_cols=127 Identities=16% Similarity=0.149 Sum_probs=89.7
Q ss_pred ccccCCCccCEEecCCC-cCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccccc
Q 047429 171 YAFSNVTSLMDLDLSKN-QITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSG 244 (466)
Q Consensus 171 ~~l~~l~~L~~L~Ls~n-~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 244 (466)
..+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.......+...+... ++|++|+|++|.|++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n--~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN--NTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC--SSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC--CCcCEEECcCCcCCH
Confidence 35667889999999999 8876 445677788999999999999765554444433211 469999999999974
Q ss_pred cCCCCcccccccCcccCCCCCCcEEeC--CCCeeeeecccccccCCCCCCCCCCccEEEccCCCCC
Q 047429 245 SLPGVTELDGTFPKQFCRPSSLVELDL--ESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 245 ~~~~~~~l~~~lp~~~~~l~~L~~L~L--~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
.... .+...+...++|++|+| ++|.|.-.+ ...+...+...++|++|+|++|.+.
T Consensus 108 ~g~~------~l~~~L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGIL------ALVEALQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHH------HHHHGGGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHH------HHHHHHHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3211 34556777889999999 776651000 0113345566789999999999986
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=2.2e-08 Score=86.77 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=76.4
Q ss_pred cccCCcCCcEEeCCCc-cccccch---HHHhhcCCCCcEEEccCCCCCCcc--chHHHHhcCCCCCCEEEcCCCCCCCCC
Q 047429 8 FHISLEDLQSINIGLN-AIRVRKF---DQWLSYHNKLTSLSLQGLDLREAT--DWLQVVITGLPSLRELDLSSSAPPKIN 81 (466)
Q Consensus 8 ~~~~l~~L~~L~Ls~n-~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 81 (466)
.+...+.|++|+|++| .+..... ...+...+.|++|+|++|.+.... .+...+.. .+.|++|+|++|.+++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh-CCCcCEEECcCCcCCHHH
Confidence 3456778888888888 7765432 134556677888888888876541 11223333 677888888888877542
Q ss_pred c--cccccccCCCCCccEEEc--CCCCCCchhh----hhhhcccCCCcEEEccCCccc
Q 047429 82 Y--RSHSLVNSSSSSLTHLHL--SLCGLSNSAY----HCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 82 ~--~~~~~~~~~l~~L~~L~L--s~n~l~~~~~----~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
. ....+.. .++|++|++ ++|.++.... ..+... ++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~--n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKN-TTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-SSCCEEECCCSSHH
T ss_pred HHHHHHHHHh--CCCceEEEecCCCCCCCHHHHHHHHHHHHhC-CCcCEEeccCCCCC
Confidence 2 0123344 567888888 7788775433 334444 67888888888765
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=8.2e-09 Score=99.14 Aligned_cols=185 Identities=14% Similarity=0.171 Sum_probs=115.9
Q ss_pred ccCCcCCcEEeCCCcccc--------ccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCC
Q 047429 9 HISLEDLQSINIGLNAIR--------VRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKI 80 (466)
Q Consensus 9 ~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 80 (466)
+.++++|+.|.+...... .......+..+++|+.|+|++|.-... +. .. +++|++|++..|.+...
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~--~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GK--KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CS--CB-CTTCSEEEEECSBCCHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---cc--cc-CCCCcEEEEecCCCChH
Confidence 457789999998765321 011225678899999999998832222 22 24 89999999998877643
Q ss_pred CccccccccCCCCCccEEEcCCC--CCCch-----hhhhh--hcccCCCcEEEccCCccccCCChhhhhcCCcccccccc
Q 047429 81 NYRSHSLVNSSSSSLTHLHLSLC--GLSNS-----AYHCL--SHISKSLVYLDLSNNQLQGPTPDYAFRNMTSLASLTSL 151 (466)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~-----~~~~l--~~l~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~~~ 151 (466)
.. ..+....+++|++|+|+.+ ...+. +...+ ..+ ++|++|+|.+|.+.+..+. .+.
T Consensus 209 ~l--~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~-~la----------- 273 (362)
T 2ra8_A 209 VV--EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-PNLKWLGIVDAEEQNVVVE-MFL----------- 273 (362)
T ss_dssp HH--HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC-TTCCEEEEESCTTHHHHHH-HHH-----------
T ss_pred HH--HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC-CCcCEEeCCCCCCchHHHH-HHH-----------
Confidence 32 2333222899999998632 11111 11112 134 7899999998887643222 111
Q ss_pred cccccccccCCCccccCccccccCCCccCEEecCCCcCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhcccc
Q 047429 152 NYITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAG 226 (466)
Q Consensus 152 n~l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 226 (466)
....+++|++|+|+.|.++. ++..+..+++|+.|++++|.++......+...+
T Consensus 274 --------------------~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-- 331 (362)
T 2ra8_A 274 --------------------ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-- 331 (362)
T ss_dssp --------------------HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred --------------------hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence 11246789999999988876 334445678999999999988755544443321
Q ss_pred ccccccceEecCCcc
Q 047429 227 CAKKSLQSFMLQNNM 241 (466)
Q Consensus 227 ~~~~~L~~L~L~~n~ 241 (466)
...+++++++
T Consensus 332 -----g~~~~~~~~~ 341 (362)
T 2ra8_A 332 -----PMKIDVSDSQ 341 (362)
T ss_dssp -----CSEEECCSBC
T ss_pred -----CCEEEecCCc
Confidence 2456777665
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.55 E-value=2.7e-06 Score=82.46 Aligned_cols=270 Identities=13% Similarity=0.147 Sum_probs=165.0
Q ss_pred ccccccCCcCCcEEeCCCccccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 5 EAGFHISLEDLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 5 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
...+|.++.+|+.+++..+ ++.+.. ..|.++ .|+.+.+..+ +..+ ....+. ..+|+.+++..+. +....
T Consensus 61 g~~aF~~C~~L~~I~lp~~-v~~Ig~-~aF~~c-~l~~i~~~~~-l~~I---~~~aF~-~~~L~~i~lp~~~-~~i~~-- 129 (379)
T 4h09_A 61 GEANFNSCYNMTKVTVAST-VTSIGD-GAFADT-KLQSYTGMER-VKKF---GDYVFQ-GTDLDDFEFPGAT-TEIGN-- 129 (379)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECT-TTTTTC-CCCEEEECTT-CCEE---CTTTTT-TCCCSEEECCTTC-CEECT--
T ss_pred HHHHhhCCCCCCEEEeCCc-ceEech-hhhcCC-CCceEECCce-eeEe---ccceec-cCCcccccCCCcc-ccccc--
Confidence 3467889999999999754 555555 778887 6888887654 4444 334455 4589999997653 33333
Q ss_pred cccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccccCCCh-----------hhhhcCCcccccccccc
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQGPTPD-----------YAFRNMTSLASLTSLNY 153 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~-----------~~~~~l~~L~~L~~~n~ 153 (466)
..+.. .+++...+..+ ++......|... ..++...+..+........ ..+.....+..+.....
T Consensus 130 ~~F~~---~~l~~~~~~~~-v~~i~~~~f~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (379)
T 4h09_A 130 YIFYN---SSVKRIVIPKS-VTTIKDGIGYKA-ENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST 204 (379)
T ss_dssp TTTTT---CCCCEEEECTT-CCEECSCTTTTC-TTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT
T ss_pred ccccc---ceeeeeeccce-eeccccchhccc-ccccccccccccceeecccceecccccceeccccccccccccccccc
Confidence 34443 35666666544 444555566666 7788877765543211100 01111222222220001
Q ss_pred cccccccCCCccccCccccccCCCccCEEecCCCcCCCC-CcccCCCCCcCEEEeeCCcCCCccchhhhhcccccccccc
Q 047429 154 ITGISKCSLPITLVRPKYAFSNVTSLMDLDLSKNQITGI-PKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSL 232 (466)
Q Consensus 154 l~~~~~~~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 232 (466)
.... .. ..+..+.+|+.+.+..+ +..+ ..++.++..|+.+.+..+ ++......|... .+|
T Consensus 205 ~~~i----~~-------~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~------~~l 265 (379)
T 4h09_A 205 VKTV----TA-------YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC------TAL 265 (379)
T ss_dssp CCEE----CT-------TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC------TTC
T ss_pred eeEE----ee-------cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee------ehh
Confidence 1111 11 35667778888888654 3333 346778888999988765 444444444333 458
Q ss_pred ceEecCCccccccCCCCcccccccC-cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCCCCCCCc
Q 047429 233 QSFMLQNNMLSGSLPGVTELDGTFP-KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHNNISGMV 311 (466)
Q Consensus 233 ~~L~L~~n~l~~~~~~~~~l~~~lp-~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 311 (466)
+.+.+..+ ++ .++ ..|..+++|+.+.+.++. ++.....+|.+|.+|+.++|..+ ++.+.
T Consensus 266 ~~i~l~~~-i~-----------~i~~~aF~~c~~L~~i~l~~~~-------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 266 KTLNFYAK-VK-----------TVPYLLCSGCSNLTKVVMDNSA-------IETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp CEEEECCC-CS-----------EECTTTTTTCTTCCEEEECCTT-------CCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred cccccccc-ce-----------eccccccccccccccccccccc-------cceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 88887654 33 333 358888999999988743 33344567889999999999754 66566
Q ss_pred hhhhhhhhhhhhcCCCCc
Q 047429 312 PTCLNNLSAMVQNGSSNV 329 (466)
Q Consensus 312 p~~~~~l~~L~~l~~~n~ 329 (466)
..+|.++++|+.+.+...
T Consensus 326 ~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 326 VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTTCTTCCCCCCCTT
T ss_pred HHHhhCCCCCCEEEECCc
Confidence 778999999887765443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.42 E-value=2e-07 Score=84.93 Aligned_cols=81 Identities=27% Similarity=0.259 Sum_probs=48.1
Q ss_pred CCCCCEEEcCCCCCCCCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccC--CCcEEEccCCccccCCCh-----
Q 047429 64 LPSLRELDLSSSAPPKINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISK--SLVYLDLSNNQLQGPTPD----- 136 (466)
Q Consensus 64 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~--~L~~L~Ls~n~l~~~~~~----- 136 (466)
+++|++|+|++|.++++......+.. +++|++|+|++|.+++. ..+..+ . +|++|+|++|.+.+..|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~--l~~L~~L~Ls~N~i~~~--~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQK--APNLKILNLSGNELKSE--RELDKI-KGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHH--STTCCEEECTTSCCCSG--GGGGGG-TTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhh--CCCCCEEECCCCccCCc--hhhhhc-ccCCcceEEccCCcCccccCcchhHH
Confidence 66777777777777665432123344 66777777777777654 223333 3 677777777777654441
Q ss_pred -hhhhcCCcccccc
Q 047429 137 -YAFRNMTSLASLT 149 (466)
Q Consensus 137 -~~~~~l~~L~~L~ 149 (466)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 1355667777665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.3e-07 Score=86.29 Aligned_cols=110 Identities=23% Similarity=0.172 Sum_probs=68.2
Q ss_pred ccCCcCCcE--EeCCCccccccc--hHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 9 HISLEDLQS--INIGLNAIRVRK--FDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 9 ~~~l~~L~~--L~Ls~n~i~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
+...+.|+. ++++.|...... .......+++|+.|+|++|.++++..++..+.. +++|++|+|++|.+.+....
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~~~l- 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSEREL- 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSGGGG-
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCchhh-
Confidence 444445554 566666432111 101224678888888888888876433444555 88888888888888876331
Q ss_pred cccccCCCCCccEEEcCCCCCCchhh-------hhhhcccCCCcEEE
Q 047429 85 HSLVNSSSSSLTHLHLSLCGLSNSAY-------HCLSHISKSLVYLD 124 (466)
Q Consensus 85 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~l~~l~~~L~~L~ 124 (466)
..+.. + +|++|+|++|.+.+..| ..+..+ ++|+.||
T Consensus 215 ~~l~~--l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~-P~L~~LD 257 (267)
T 3rw6_A 215 DKIKG--L-KLEELWLDGNSLCDTFRDQSTYISAIRERF-PKLLRLD 257 (267)
T ss_dssp GGGTT--S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHC-TTCCEES
T ss_pred hhccc--C-CcceEEccCCcCccccCcchhHHHHHHHHC-cccCeEC
Confidence 23333 3 78888888888875433 234555 8888775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=4.3e-07 Score=76.86 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCCC-CCCCCccccccccC--CCCCccEEEcCCCC-CCchhhhhhh
Q 047429 39 KLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSSA-PPKINYRSHSLVNS--SSSSLTHLHLSLCG-LSNSAYHCLS 114 (466)
Q Consensus 39 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~--~l~~L~~L~Ls~n~-l~~~~~~~l~ 114 (466)
.|++||+++|.++... ...+.. +++|++|+|++|. +++..- ..+... ..++|++|++++|. ++...-..+.
T Consensus 62 ~L~~LDLs~~~Itd~G--L~~L~~-~~~L~~L~L~~C~~ItD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIG--FDHMEG-LQYVEKIRLCKCHYIEDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGG--GGGGTT-CSCCCEEEEESCTTCCHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCCccHHH--HHHhcC-CCCCCEEEeCCCCccCHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4666666666655442 223333 6666666666664 443222 222220 01356777777663 6655555566
Q ss_pred cccCCCcEEEccCCc
Q 047429 115 HISKSLVYLDLSNNQ 129 (466)
Q Consensus 115 ~l~~~L~~L~Ls~n~ 129 (466)
.+ ++|++|++++|.
T Consensus 137 ~~-~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HF-RNLKYLFLSDLP 150 (176)
T ss_dssp GC-TTCCEEEEESCT
T ss_pred cC-CCCCEEECCCCC
Confidence 66 677777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=1.8e-06 Score=73.06 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCcEEeCCCccccccchHHHhhcCCCCcEEEccCCC-CCCccchHHHHhcC---CCCCCEEEcCCCC-CCCCCccccccc
Q 047429 14 DLQSINIGLNAIRVRKFDQWLSYHNKLTSLSLQGLD-LREATDWLQVVITG---LPSLRELDLSSSA-PPKINYRSHSLV 88 (466)
Q Consensus 14 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~---l~~L~~L~Ls~n~-l~~~~~~~~~~~ 88 (466)
.|+.||++++.+++... ..+..+++|++|+|++|. +++.. ...+... .++|++|+|++|. +++..- ..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~g--L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGC--LERLSQLENLQKSMLEMEIISCGNVTDKGI--IALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHH--HHHHHTCHHHHHHCCEEEEESCTTCCHHHH--HHGG
T ss_pred eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHH--HHHHHhcccccCCCCEEEcCCCCcCCHHHH--HHHh
Confidence 57888888888887777 677788888888888885 55432 3344431 2468888888875 665443 4455
Q ss_pred cCCCCCccEEEcCCCC-CC
Q 047429 89 NSSSSSLTHLHLSLCG-LS 106 (466)
Q Consensus 89 ~~~l~~L~~L~Ls~n~-l~ 106 (466)
. +++|++|++++|. ++
T Consensus 137 ~--~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 H--FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp G--CTTCCEEEEESCTTCC
T ss_pred c--CCCCCEEECCCCCCCC
Confidence 5 7888888888885 44
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.86 E-value=8.9e-07 Score=76.40 Aligned_cols=125 Identities=10% Similarity=0.176 Sum_probs=87.1
Q ss_pred cccCCCccCEEecCCC-cCCC-----CCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCcccccc
Q 047429 172 AFSNVTSLMDLDLSKN-QITG-----IPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNMLSGS 245 (466)
Q Consensus 172 ~l~~l~~L~~L~Ls~n-~l~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 245 (466)
.+...+.|++|+|++| .|.. +.+.+..-+.|+.|+|++|.+.+.....+...+... .+|++|+|++|.|++.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N--~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS--PSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC--SSCCEEECCSSBCCHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC--CccCeEecCCCcCCHH
Confidence 3455678999999985 7765 455677788999999999999866655555443322 5699999999999743
Q ss_pred CCCCcccccccCcccCCCCCCcEEeCCCCeeeeecccccc----cCCCCCCCCCCccEEEccCCCCC
Q 047429 246 LPGVTELDGTFPKQFCRPSSLVELDLESNQLWLRFNHING----SATPKLCSSPMLQVLDFSHNNIS 308 (466)
Q Consensus 246 ~~~~~~l~~~lp~~~~~l~~L~~L~L~~n~l~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~N~l~ 308 (466)
... .+-+.+...+.|++|+|++|.. +.+.. .+...+..-+.|+.|+++.|.+.
T Consensus 114 Ga~------ala~aL~~N~tL~~L~L~n~~~----~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLA------RLLRSTLVTQSIVEFKADNQRQ----SVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHH------HHHHHTTTTCCCSEEECCCCSS----CCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHH------HHHHHHhhCCceeEEECCCCcC----cCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 221 3345567778899999986421 02221 23345666788999999988764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=6.6e-05 Score=64.66 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCcCCcEEeCCCc-cccccch---HHHhhcCCCCcEEEccCCCCCCc--cchHHHHhcCCCCCCEEEcCCCCCCCCCccc
Q 047429 11 SLEDLQSINIGLN-AIRVRKF---DQWLSYHNKLTSLSLQGLDLREA--TDWLQVVITGLPSLRELDLSSSAPPKINYRS 84 (466)
Q Consensus 11 ~l~~L~~L~Ls~n-~i~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 84 (466)
+-+.|++|+|++| .|.+... ...+..-..|+.|+|++|.+... ..+...+.. -+.|++|+|++|.|+......
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-CCccCeEecCCCcCCHHHHHH
Confidence 3456777777764 5543322 13344556677777777776543 111223333 566777777777766443210
Q ss_pred --cccccCCCCCccEEEcCCC---CCCch----hhhhhhcccCCCcEEEccCCcc
Q 047429 85 --HSLVNSSSSSLTHLHLSLC---GLSNS----AYHCLSHISKSLVYLDLSNNQL 130 (466)
Q Consensus 85 --~~~~~~~l~~L~~L~Ls~n---~l~~~----~~~~l~~l~~~L~~L~Ls~n~l 130 (466)
..+.. -+.|++|+|++| .+... +...+..- +.|+.|+++.|.+
T Consensus 118 la~aL~~--N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCH
T ss_pred HHHHHhh--CCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCCc
Confidence 11222 455777777654 23322 22233333 5677777765543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.09 E-value=0.013 Score=46.83 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=28.5
Q ss_pred EEecCCCcCC--CCCcccCCCCCcCEEEeeCCcCCCccchhhhhccccccccccceEecCCccc
Q 047429 181 DLDLSKNQIT--GIPKSFGDMCCLKTLKIHDNILTAKLPELFLNFSAGCAKKSLQSFMLQNNML 242 (466)
Q Consensus 181 ~L~Ls~n~l~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l 242 (466)
.++.+++.++ .+|..+. ++|++|+|++|+|+...+..|..+ ++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l------~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDAL------PALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGC------TTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhc------cccCEEEecCCCe
Confidence 4555566655 4554322 245666666666655544444443 3455555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.92 E-value=0.017 Score=46.11 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=31.1
Q ss_pred EEEcCCCCCC--CCCccccccccCCCCCccEEEcCCCCCCchhhhhhhcccCCCcEEEccCCccc
Q 047429 69 ELDLSSSAPP--KINYRSHSLVNSSSSSLTHLHLSLCGLSNSAYHCLSHISKSLVYLDLSNNQLQ 131 (466)
Q Consensus 69 ~L~Ls~n~l~--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 131 (466)
.++.+++.++ .++. .+ ..+|++|+|++|.|+.+.+..|..+ ++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~---~l----p~~l~~L~Ls~N~l~~l~~~~f~~l-~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT---AF----PVDTTELVLTGNNLTALPPGLLDAL-PALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS---CC----CTTCSEEECTTSCCSSCCTTTGGGC-TTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC---CC----CcCCCEEECCCCcCCccChhhhhhc-cccCEEEecCCCee
Confidence 4555665555 4332 11 2356666666666665555556555 66666666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.52 E-value=52 Score=24.09 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=28.8
Q ss_pred cccCCCCCCcEEeCCCCeeeeecccccccCCCCCCCCCCccEEEccCC
Q 047429 258 KQFCRPSSLVELDLESNQLWLRFNHINGSATPKLCSSPMLQVLDFSHN 305 (466)
Q Consensus 258 ~~~~~l~~L~~L~L~~n~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~N 305 (466)
..|.+|++|+.+.+-. .++..-..+|.+|.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~--------~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--------NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECT--------TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCC--------chheEcHHHHhccCCccEEEEcCC
Confidence 3578888888888875 334455667888888888888653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.36 E-value=35 Score=25.06 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=25.5
Q ss_pred ccccchHHHhhcCCCCcEEEccCCCCCCccchHHHHhcCCCCCCEEEcCCC
Q 047429 25 IRVRKFDQWLSYHNKLTSLSLQGLDLREATDWLQVVITGLPSLRELDLSSS 75 (466)
Q Consensus 25 i~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 75 (466)
++.+.- ..|.+|..|+.+.+-.+ ++.+. ...+.++.+|+.+.+...
T Consensus 8 vt~I~~-~aF~~c~~L~~i~iP~~-v~~Ig---~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDK-SLFAGNTVIREITVQPN-IGLLY---DGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCS-CTTTTCTTCCCEEECTT-SSCCC---TTSSTTCTTCCCEEECCS
T ss_pred cCEecH-HHhcCCCCCcEEEcCCc-hheEc---HHHHhccCCccEEEEcCC
Confidence 333333 55667777777777654 33332 133334777777776543
Done!