BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047433
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+++E LF G+ A YT+ALG+ + P+++ VL+ NRA CHL L + D A ++A
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQ-AVLHRNRAACHLKLEDYDKAETEA 88
Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537
++A+ K+L+RRSQA ++ LGR L ++ + C+ E +K
Sbjct: 89 SKAI---EKDGGDVKALYRRSQA--LEKLGR--LDQAVLDLQRCVSLEPKNK 133
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+K H F EA Y A+ + P+ P V YSN + C++ + + I
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-----VFYSNISACYISTGDLEKVIEFT 78
Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD-CIMFING 528
T+AL + P+ H K+L RR+ A + G +++ D ++ +NG
Sbjct: 79 TKALEIK--PD-HSKALLRRASANESLGNFTDAMFDLSVLSLNG 119
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+K H F EA Y A+ + P+ P V YSN + C++ + + I
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-----VFYSNISACYISTGDLEKVIEFT 82
Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD-CIMFING 528
T+AL + P+ H K+L RR+ A + G +++ D ++ +NG
Sbjct: 83 TKALEIK--PD-HSKALLRRASANESLGNFTDAMFDLSVLSLNG 123
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+K++ LF + EAA Y A+ P V Y+NRA C+L +++P+ A++D
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADC 66
Query: 486 TRALCL 491
RAL L
Sbjct: 67 RRALEL 72
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+K++ LF + EAA Y A+ P V Y+NRA C+L +++P+ A++D
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQQPEQALADC 61
Query: 486 TRALCLS 492
RAL L
Sbjct: 62 RRALELD 68
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAA 481
L ++K + F G+ +A YTEA+ P K LYSNRA C+ L E A
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-----LYSNRAACYTKLLEFQLA 69
Query: 482 ISD 484
+ D
Sbjct: 70 LKD 72
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+K +A F + E A Y++A+ + PS + Y NR+ +L A+ DA
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSN-----AIYYGNRSLAYLRTECYGYALGDA 63
Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
TRA+ L + K +RR+ + G R +L D
Sbjct: 64 TRAIELD---KKYIKGYYRRAASNMALGKFRAALRD 96
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+K +A F + E A Y++A+ + PS + Y NR+ +L A++DA
Sbjct: 24 LKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYGNRSLAYLRTECYGYALNDA 78
Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
TRA+ L + K +RR+ + G R +L D
Sbjct: 79 TRAIELD---KKYIKGYYRRAASNMALGKFRAALRD 111
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDA 485
+K +A F + E A Y++A+ + PS + Y NR+ +L A+ DA
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYGNRSLAYLRTECYGYALGDA 70
Query: 486 TRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
TRA+ L + K +RR+ + G R +L D
Sbjct: 71 TRAIELD---KKYIKGYYRRAASNMALGKFRAALRD 103
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 461 RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAY 509
R+ + N A CHL L+ AAI +AL L +++ K L+RR +A+
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELD---SNNEKGLFRRGEAH 240
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 426 IKQEAKHLFWLGEIEEAAMKYTEALG-----------VCPSRPKNERMVLYSNRAQCHLL 474
IK+E F EI EA +KY EAL + + KN + N A C+
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 475 LREPDAAISDATRALCLSNPPNSHCKSLWR 504
++ AI A++ L + ++ K+L++
Sbjct: 101 NKDYPKAIDHASKVLKID---KNNVKALYK 127
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISD 484
K + F G+ A Y EA+ P E +LYSNRA C L E A+ D
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAACLTKLMEFQRALDD 69
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVC--------PSRPK-----NERMVLYSNRA 469
V LI QE L+ G ++EAA KY +A+ P P+ + L N
Sbjct: 8 VPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYC 67
Query: 470 QCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521
QC L++ E + + L N + + K+ ++R +A+ +E+ D
Sbjct: 68 QCKLVVEEYYEVLDHCSSIL---NKYDDNVKAYFKRGKAHAAVWNAQEAQAD 116
>pdb|2JBH|A Chain A, Human Phosphoribosyl Transferase Domain Containing 1
pdb|2JBH|B Chain B, Human Phosphoribosyl Transferase Domain Containing 1
Length = 225
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 282 GVGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCL 327
G I +LC K G K A+ ++E+L N+SR+SD + M +D +
Sbjct: 65 GYSDIMVLCVLKGGYKFXAD---LVEHLKNISRNSDRFVSMKVDFI 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,775,381
Number of Sequences: 62578
Number of extensions: 639993
Number of successful extensions: 1308
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 21
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)