Query 047433
Match_columns 614
No_of_seqs 394 out of 2072
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 11:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4234 TPR repeat-containing 99.8 7.6E-19 1.7E-23 172.5 16.9 156 404-564 78-238 (271)
2 KOG0553 TPR repeat-containing 99.8 4.7E-19 1E-23 182.5 12.2 108 418-533 76-183 (304)
3 KOG0624 dsRNA-activated protei 99.7 1.5E-16 3.2E-21 166.2 20.1 254 297-607 56-340 (504)
4 KOG0548 Molecular co-chaperone 99.7 1.7E-15 3.7E-20 165.3 22.1 105 419-531 354-458 (539)
5 KOG0543 FKBP-type peptidyl-pro 99.7 1.7E-15 3.7E-20 161.5 17.4 145 418-567 203-357 (397)
6 KOG4626 O-linked N-acetylgluco 99.7 6.6E-16 1.4E-20 170.1 13.6 289 293-612 196-498 (966)
7 KOG0547 Translocase of outer m 99.7 6E-16 1.3E-20 167.2 13.0 127 410-552 105-231 (606)
8 KOG4626 O-linked N-acetylgluco 99.6 1.1E-14 2.3E-19 160.7 15.8 303 283-605 154-457 (966)
9 KOG4648 Uncharacterized conser 99.6 4.4E-15 9.6E-20 155.2 9.1 106 419-532 93-198 (536)
10 KOG0548 Molecular co-chaperone 99.5 2.9E-14 6.3E-19 155.8 12.0 166 423-609 2-167 (539)
11 KOG0550 Molecular chaperone (D 99.5 7.3E-14 1.6E-18 149.0 11.6 108 419-530 245-352 (486)
12 KOG0545 Aryl-hydrocarbon recep 99.5 3E-13 6.5E-18 136.6 12.8 154 402-563 161-327 (329)
13 TIGR00990 3a0801s09 mitochondr 99.5 8.4E-12 1.8E-16 141.6 25.7 174 421-605 329-502 (615)
14 KOG0376 Serine-threonine phosp 99.5 9E-14 2E-18 150.9 8.3 131 422-568 3-133 (476)
15 PLN03088 SGT1, suppressor of 99.4 1.2E-12 2.7E-17 140.0 15.6 101 424-532 3-103 (356)
16 KOG0551 Hsp90 co-chaperone CNS 99.4 3.7E-13 8.1E-18 140.5 10.8 104 422-529 80-183 (390)
17 PRK15359 type III secretion sy 99.4 4.1E-12 9E-17 119.1 14.5 102 425-534 26-127 (144)
18 PRK15174 Vi polysaccharide exp 99.4 6.7E-11 1.5E-15 136.0 24.0 285 294-604 89-386 (656)
19 TIGR00990 3a0801s09 mitochondr 99.4 3.2E-11 7E-16 136.9 21.2 254 297-601 312-573 (615)
20 KOG0547 Translocase of outer m 99.3 3.4E-11 7.3E-16 130.9 18.4 289 287-602 155-494 (606)
21 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-11 3E-16 128.3 13.6 103 422-532 63-165 (296)
22 KOG4642 Chaperone-dependent E3 99.3 1.8E-11 4E-16 123.4 11.1 99 422-528 9-107 (284)
23 TIGR02552 LcrH_SycD type III s 99.2 1.7E-10 3.6E-15 104.4 13.6 104 422-533 16-119 (135)
24 TIGR02917 PEP_TPR_lipo putativ 99.2 2E-09 4.3E-14 121.9 24.1 168 422-602 702-869 (899)
25 PRK15363 pathogenicity island 99.2 3.7E-10 8E-15 108.3 15.2 106 410-530 28-134 (157)
26 TIGR02917 PEP_TPR_lipo putativ 99.2 3.4E-09 7.4E-14 119.9 24.8 222 288-531 438-667 (899)
27 PRK15174 Vi polysaccharide exp 99.2 4.2E-09 9.1E-14 121.3 24.7 255 290-570 119-386 (656)
28 PRK09782 bacteriophage N4 rece 99.2 2.1E-09 4.6E-14 128.5 22.2 224 289-534 485-712 (987)
29 TIGR02521 type_IV_pilW type IV 99.1 1.1E-09 2.3E-14 103.8 15.6 103 422-530 64-166 (234)
30 PRK11788 tetratricopeptide rep 99.1 1.9E-08 4.2E-13 106.1 25.7 290 297-609 53-357 (389)
31 KOG0624 dsRNA-activated protei 99.1 5.2E-10 1.1E-14 117.8 12.7 104 422-533 37-140 (504)
32 PF13414 TPR_11: TPR repeat; P 99.1 2.7E-10 5.9E-15 92.3 7.6 67 422-493 2-69 (69)
33 PRK11447 cellulose synthase su 99.1 9.8E-09 2.1E-13 125.0 23.7 66 424-494 462-527 (1157)
34 KOG4555 TPR repeat-containing 99.1 2.3E-09 5.1E-14 100.1 13.9 105 420-529 40-145 (175)
35 cd00189 TPR Tetratricopeptide 99.1 2E-09 4.2E-14 85.7 11.8 98 425-530 2-99 (100)
36 PRK10370 formate-dependent nit 99.1 1.9E-09 4.1E-14 106.6 14.2 105 420-532 70-177 (198)
37 PRK11447 cellulose synthase su 99.1 9.5E-09 2.1E-13 125.1 22.8 234 283-533 150-419 (1157)
38 PF13414 TPR_11: TPR repeat; P 99.0 7.5E-10 1.6E-14 89.7 7.9 66 462-530 3-69 (69)
39 PRK09782 bacteriophage N4 rece 99.0 1.8E-08 4E-13 120.6 21.5 165 428-604 581-745 (987)
40 TIGR02795 tol_pal_ybgF tol-pal 99.0 8.3E-09 1.8E-13 90.0 13.7 107 424-532 3-109 (119)
41 PRK12370 invasion protein regu 99.0 4.3E-09 9.3E-14 118.7 13.4 89 436-532 317-405 (553)
42 KOG1126 DNA-binding cell divis 99.0 2.5E-09 5.4E-14 119.9 10.8 177 420-611 418-594 (638)
43 KOG1308 Hsp70-interacting prot 98.9 1.3E-09 2.8E-14 114.9 6.5 106 418-531 109-214 (377)
44 PLN02789 farnesyltranstransfer 98.9 2.7E-08 5.8E-13 105.6 16.5 118 410-535 58-178 (320)
45 PRK12370 invasion protein regu 98.9 4.8E-08 1E-12 110.3 19.5 101 421-529 336-436 (553)
46 PRK11788 tetratricopeptide rep 98.9 1.1E-07 2.3E-12 100.5 19.7 176 422-603 140-315 (389)
47 TIGR02521 type_IV_pilW type IV 98.9 2.5E-07 5.3E-12 87.6 19.4 99 425-531 101-201 (234)
48 PRK02603 photosystem I assembl 98.9 4.5E-08 9.7E-13 93.7 13.8 107 419-530 31-151 (172)
49 PF12895 Apc3: Anaphase-promot 98.8 7.7E-09 1.7E-13 87.6 7.3 83 436-525 2-84 (84)
50 TIGR03302 OM_YfiO outer membra 98.8 1.3E-07 2.8E-12 93.8 17.0 112 422-535 32-151 (235)
51 PRK15359 type III secretion sy 98.8 2E-08 4.2E-13 94.3 10.2 115 443-571 13-127 (144)
52 PRK15179 Vi polysaccharide bio 98.8 1.5E-07 3.2E-12 109.2 19.1 103 419-529 116-218 (694)
53 KOG0550 Molecular chaperone (D 98.8 3.2E-09 6.9E-14 114.0 4.1 86 420-513 46-131 (486)
54 CHL00033 ycf3 photosystem I as 98.8 1.2E-07 2.7E-12 90.1 14.4 99 422-525 34-139 (168)
55 COG3063 PilF Tfp pilus assembl 98.8 1.4E-07 3.1E-12 95.3 14.9 143 422-574 34-177 (250)
56 PRK11189 lipoprotein NlpI; Pro 98.8 6E-08 1.3E-12 101.2 12.9 126 436-568 39-164 (296)
57 PLN02789 farnesyltranstransfer 98.8 6.1E-08 1.3E-12 102.9 12.8 163 433-606 47-219 (320)
58 PRK15179 Vi polysaccharide bio 98.8 1.3E-07 2.7E-12 109.8 16.2 133 422-565 85-217 (694)
59 KOG1126 DNA-binding cell divis 98.7 2E-07 4.2E-12 105.0 16.6 207 303-566 411-621 (638)
60 KOG1125 TPR repeat-containing 98.7 1.1E-07 2.4E-12 105.7 13.9 105 422-534 429-533 (579)
61 KOG1155 Anaphase-promoting com 98.7 1.1E-07 2.5E-12 103.5 11.8 128 428-566 335-462 (559)
62 PRK10049 pgaA outer membrane p 98.7 1.5E-06 3.3E-11 101.8 22.0 170 429-602 278-459 (765)
63 PRK10803 tol-pal system protei 98.7 3.8E-07 8.3E-12 94.5 14.5 108 424-533 143-251 (263)
64 PRK15331 chaperone protein Sic 98.7 3.9E-07 8.4E-12 88.2 13.3 104 410-528 31-134 (165)
65 PRK10370 formate-dependent nit 98.7 4.5E-07 9.8E-12 89.8 14.1 122 436-568 52-176 (198)
66 PF13432 TPR_16: Tetratricopep 98.6 1E-07 2.2E-12 76.5 7.4 64 466-532 1-64 (65)
67 TIGR02552 LcrH_SycD type III s 98.6 3.6E-07 7.7E-12 82.6 11.4 83 444-534 4-86 (135)
68 TIGR03302 OM_YfiO outer membra 98.6 5.7E-06 1.2E-10 82.0 20.7 108 424-533 71-200 (235)
69 PRK10866 outer membrane biogen 98.6 1.6E-06 3.5E-11 88.6 17.1 129 423-553 32-179 (243)
70 PF13525 YfiO: Outer membrane 98.6 1.6E-06 3.5E-11 85.8 16.5 130 422-553 4-145 (203)
71 PF13512 TPR_18: Tetratricopep 98.6 1.5E-06 3.3E-11 82.3 14.2 110 423-534 10-134 (142)
72 PRK10049 pgaA outer membrane p 98.5 4.8E-06 1E-10 97.8 21.1 102 424-533 360-461 (765)
73 PF13432 TPR_16: Tetratricopep 98.5 2.7E-07 5.8E-12 74.1 7.2 62 428-494 2-63 (65)
74 KOG1155 Anaphase-promoting com 98.5 1.1E-06 2.4E-11 95.9 13.9 108 415-530 356-463 (559)
75 KOG1310 WD40 repeat protein [G 98.5 3E-07 6.6E-12 101.3 8.5 103 420-530 371-476 (758)
76 PF13429 TPR_15: Tetratricopep 98.5 4.8E-07 1E-11 92.6 9.1 102 422-531 145-246 (280)
77 PF13371 TPR_9: Tetratricopept 98.4 1.1E-06 2.4E-11 71.7 8.7 58 432-494 4-61 (73)
78 PF13429 TPR_15: Tetratricopep 98.4 5.6E-07 1.2E-11 92.1 7.6 164 423-597 110-275 (280)
79 COG5010 TadD Flp pilus assembl 98.4 3.5E-06 7.6E-11 86.5 12.8 99 424-530 101-199 (257)
80 KOG1125 TPR repeat-containing 98.4 4.4E-06 9.6E-11 93.2 14.4 97 427-531 289-385 (579)
81 PF13371 TPR_9: Tetratricopept 98.4 9.6E-07 2.1E-11 72.1 6.6 63 469-534 2-64 (73)
82 COG3063 PilF Tfp pilus assembl 98.4 3.3E-06 7.3E-11 85.6 11.7 144 458-607 31-176 (250)
83 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.3E-06 2.8E-11 95.9 9.5 72 418-494 70-144 (453)
84 PF14559 TPR_19: Tetratricopep 98.3 1.7E-06 3.8E-11 69.6 7.3 66 433-506 1-66 (68)
85 COG4785 NlpI Lipoprotein NlpI, 98.3 5.9E-06 1.3E-10 83.3 11.9 109 410-532 58-166 (297)
86 KOG0553 TPR repeat-containing 98.3 1.7E-06 3.6E-11 90.4 8.1 105 460-570 79-183 (304)
87 KOG2002 TPR-containing nuclear 98.3 3.5E-05 7.6E-10 90.2 19.4 234 238-532 164-413 (1018)
88 COG4235 Cytochrome c biogenesi 98.3 9.3E-06 2E-10 84.9 13.1 106 418-531 151-259 (287)
89 PLN03088 SGT1, suppressor of 98.2 5.9E-06 1.3E-10 88.9 11.0 84 422-513 35-118 (356)
90 PF09976 TPR_21: Tetratricopep 98.2 1.3E-05 2.8E-10 74.8 11.9 98 423-526 48-145 (145)
91 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 7.2E-06 1.6E-10 90.2 11.4 69 452-528 70-141 (453)
92 PF12688 TPR_5: Tetratrico pep 98.2 3.2E-05 6.9E-10 71.4 13.1 102 425-528 3-104 (120)
93 COG1729 Uncharacterized protei 98.2 2.6E-05 5.6E-10 80.7 13.8 109 424-534 142-250 (262)
94 CHL00033 ycf3 photosystem I as 98.2 1.2E-05 2.6E-10 76.5 10.1 103 429-534 5-107 (168)
95 TIGR02795 tol_pal_ybgF tol-pal 98.1 2.5E-05 5.3E-10 68.0 11.1 72 462-533 2-73 (119)
96 KOG4162 Predicted calmodulin-b 98.1 2E-05 4.3E-10 90.4 13.1 104 421-532 682-787 (799)
97 cd05804 StaR_like StaR_like; a 98.1 2.9E-05 6.2E-10 81.2 13.3 102 424-530 115-217 (355)
98 KOG2002 TPR-containing nuclear 98.1 8.1E-05 1.8E-09 87.3 17.9 109 420-533 267-376 (1018)
99 cd00189 TPR Tetratricopeptide 98.1 4.6E-05 1E-09 60.2 11.4 67 464-533 2-68 (100)
100 PF13424 TPR_12: Tetratricopep 98.1 5.6E-06 1.2E-10 68.6 6.1 69 460-528 3-75 (78)
101 KOG1173 Anaphase-promoting com 98.1 1.6E-05 3.4E-10 88.8 11.2 109 420-531 411-521 (611)
102 PRK02603 photosystem I assembl 98.1 5.3E-05 1.1E-09 72.6 13.5 82 451-532 24-105 (172)
103 PRK14574 hmsH outer membrane p 98.1 4.3E-05 9.2E-10 90.6 15.2 103 422-532 33-135 (822)
104 cd05804 StaR_like StaR_like; a 98.1 7E-05 1.5E-09 78.3 15.3 67 462-531 114-180 (355)
105 PF12569 NARP1: NMDA receptor- 98.0 0.0011 2.4E-08 75.0 24.4 228 286-529 43-292 (517)
106 KOG2076 RNA polymerase III tra 98.0 0.00011 2.5E-09 85.5 15.7 101 422-530 138-238 (895)
107 PRK10153 DNA-binding transcrip 98.0 9.5E-05 2.1E-09 83.6 14.7 108 422-533 338-487 (517)
108 KOG1129 TPR repeat-containing 98.0 3.9E-05 8.4E-10 81.3 10.5 139 425-571 326-464 (478)
109 PF13424 TPR_12: Tetratricopep 98.0 2.8E-05 6.1E-10 64.4 7.6 72 421-492 3-76 (78)
110 KOG1840 Kinesin light chain [C 98.0 0.00015 3.3E-09 81.6 15.4 146 420-566 238-397 (508)
111 KOG1128 Uncharacterized conser 98.0 0.00011 2.3E-09 84.2 14.2 108 422-537 518-625 (777)
112 PF06552 TOM20_plant: Plant sp 97.9 3.4E-05 7.4E-10 75.8 8.8 85 439-531 7-112 (186)
113 PRK10747 putative protoheme IX 97.9 0.00058 1.3E-08 74.3 19.3 208 277-530 149-359 (398)
114 KOG0546 HSP90 co-chaperone CPR 97.9 1.3E-05 2.8E-10 85.5 6.2 107 422-531 221-341 (372)
115 COG2956 Predicted N-acetylgluc 97.9 0.0021 4.6E-08 68.4 22.1 133 389-531 141-281 (389)
116 KOG0543 FKBP-type peptidyl-pro 97.9 0.00025 5.3E-09 77.0 15.5 100 423-530 257-357 (397)
117 PF09976 TPR_21: Tetratricopep 97.9 0.00051 1.1E-08 64.1 15.8 101 422-524 10-110 (145)
118 KOG1840 Kinesin light chain [C 97.9 0.0029 6.4E-08 71.5 24.2 229 276-529 192-439 (508)
119 PRK15363 pathogenicity island 97.9 6.9E-05 1.5E-09 72.3 9.7 100 462-567 35-134 (157)
120 KOG2076 RNA polymerase III tra 97.9 0.00019 4.1E-09 83.7 14.9 110 413-530 163-272 (895)
121 KOG4648 Uncharacterized conser 97.9 2.9E-06 6.2E-11 90.0 -0.3 191 334-536 137-338 (536)
122 KOG1128 Uncharacterized conser 97.9 0.00015 3.4E-09 83.0 13.3 101 422-530 484-584 (777)
123 PF14559 TPR_19: Tetratricopep 97.9 2.9E-05 6.2E-10 62.5 5.5 57 472-531 1-57 (68)
124 KOG1174 Anaphase-promoting com 97.8 0.00051 1.1E-08 74.8 16.1 106 418-531 329-470 (564)
125 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00064 1.4E-08 74.6 16.7 91 428-526 205-295 (395)
126 COG4783 Putative Zn-dependent 97.8 0.00018 3.8E-09 79.5 12.0 99 423-529 340-438 (484)
127 TIGR00540 hemY_coli hemY prote 97.8 0.0046 9.9E-08 67.5 22.6 193 297-531 171-369 (409)
128 PF14938 SNAP: Soluble NSF att 97.8 0.0019 4E-08 67.2 18.7 190 321-536 38-233 (282)
129 PF12968 DUF3856: Domain of Un 97.8 0.00041 8.9E-09 64.4 11.9 103 426-528 12-129 (144)
130 COG5010 TadD Flp pilus assembl 97.7 0.00029 6.3E-09 72.6 11.9 107 427-541 70-176 (257)
131 COG4783 Putative Zn-dependent 97.7 0.00037 8.1E-09 77.0 13.0 105 422-534 305-409 (484)
132 PRK14574 hmsH outer membrane p 97.7 0.00027 5.9E-09 83.9 12.8 88 435-530 80-167 (822)
133 COG4105 ComL DNA uptake lipopr 97.7 0.0017 3.7E-08 67.1 16.2 130 422-553 33-171 (254)
134 KOG2003 TPR repeat-containing 97.7 0.00077 1.7E-08 74.0 14.1 64 462-528 490-553 (840)
135 KOG2003 TPR repeat-containing 97.6 0.00011 2.4E-09 80.4 7.4 103 422-532 489-591 (840)
136 COG2956 Predicted N-acetylgluc 97.6 0.0036 7.9E-08 66.7 18.2 105 424-531 142-246 (389)
137 TIGR00540 hemY_coli hemY prote 97.6 0.00094 2E-08 72.8 14.6 98 425-530 120-218 (409)
138 PRK11906 transcriptional regul 97.6 0.00062 1.4E-08 75.4 13.0 131 425-566 257-402 (458)
139 PRK10747 putative protoheme IX 97.6 0.014 2.9E-07 63.7 22.8 131 451-599 257-390 (398)
140 KOG4234 TPR repeat-containing 97.6 0.0015 3.2E-08 65.8 13.7 68 422-494 133-200 (271)
141 KOG1173 Anaphase-promoting com 97.6 0.00042 9E-09 77.7 10.9 97 430-531 387-487 (611)
142 PRK14720 transcript cleavage f 97.5 0.00046 9.9E-09 82.2 11.3 140 382-530 27-180 (906)
143 PRK10803 tol-pal system protei 97.5 0.00071 1.5E-08 70.3 11.5 104 462-566 142-247 (263)
144 PF00515 TPR_1: Tetratricopept 97.5 0.00014 2.9E-09 51.3 4.3 32 463-494 2-33 (34)
145 KOG4151 Myosin assembly protei 97.5 0.00021 4.5E-09 82.6 8.1 115 414-532 44-160 (748)
146 PF03704 BTAD: Bacterial trans 97.5 0.0022 4.8E-08 59.4 13.3 102 424-528 7-125 (146)
147 PRK11906 transcriptional regul 97.5 0.00064 1.4E-08 75.3 11.1 88 436-531 317-404 (458)
148 PRK14720 transcript cleavage f 97.5 0.0013 2.9E-08 78.3 14.2 133 422-565 30-178 (906)
149 PF13525 YfiO: Outer membrane 97.5 0.002 4.3E-08 63.8 13.3 74 462-535 5-78 (203)
150 KOG3060 Uncharacterized conser 97.5 0.0058 1.3E-07 63.3 16.8 98 425-530 122-222 (289)
151 KOG3060 Uncharacterized conser 97.4 0.0034 7.3E-08 65.0 14.8 133 425-566 88-221 (289)
152 KOG1127 TPR repeat-containing 97.4 0.0024 5.2E-08 75.6 15.3 101 422-530 561-661 (1238)
153 PF12688 TPR_5: Tetratrico pep 97.4 0.00086 1.9E-08 62.0 9.0 71 463-533 2-72 (120)
154 KOG0495 HAT repeat protein [RN 97.4 0.0077 1.7E-07 69.0 17.9 159 431-604 626-787 (913)
155 KOG4555 TPR repeat-containing 97.4 0.0015 3.2E-08 61.9 10.2 101 465-568 46-147 (175)
156 KOG1130 Predicted G-alpha GTPa 97.3 0.0018 3.9E-08 70.7 11.9 138 384-529 163-305 (639)
157 PF13512 TPR_18: Tetratricopep 97.3 0.0079 1.7E-07 57.3 14.8 123 462-603 10-132 (142)
158 PF12895 Apc3: Anaphase-promot 97.3 0.00043 9.4E-09 58.5 5.5 59 424-488 26-84 (84)
159 COG4700 Uncharacterized protei 97.3 0.014 3E-07 58.4 16.4 103 423-531 89-192 (251)
160 KOG1174 Anaphase-promoting com 97.3 0.0028 6.1E-08 69.3 12.2 106 420-533 297-402 (564)
161 PRK10866 outer membrane biogen 97.3 0.0052 1.1E-07 63.1 13.8 75 462-536 32-106 (243)
162 PF00515 TPR_1: Tetratricopept 97.2 0.00072 1.6E-08 47.6 4.9 33 499-531 1-33 (34)
163 PF12569 NARP1: NMDA receptor- 97.2 0.024 5.2E-07 64.5 19.3 76 460-540 192-267 (517)
164 PF13431 TPR_17: Tetratricopep 97.1 0.00045 9.7E-09 49.9 3.4 33 485-520 2-34 (34)
165 PF13431 TPR_17: Tetratricopep 97.1 0.0005 1.1E-08 49.6 3.4 34 445-483 1-34 (34)
166 PRK10941 hypothetical protein; 97.1 0.0031 6.6E-08 66.0 10.6 81 453-536 172-252 (269)
167 PF14938 SNAP: Soluble NSF att 97.1 0.01 2.2E-07 61.7 14.5 109 422-531 74-187 (282)
168 PF04733 Coatomer_E: Coatomer 97.1 0.0064 1.4E-07 64.1 13.0 87 437-531 181-268 (290)
169 KOG1156 N-terminal acetyltrans 97.1 0.0032 7E-08 71.7 10.9 96 426-529 78-173 (700)
170 PF07719 TPR_2: Tetratricopept 97.0 0.0011 2.5E-08 46.1 4.5 31 464-494 3-33 (34)
171 PF07719 TPR_2: Tetratricopept 97.0 0.0016 3.4E-08 45.4 5.0 33 499-531 1-33 (34)
172 PF13428 TPR_14: Tetratricopep 97.0 0.0013 2.9E-08 49.5 4.7 42 463-507 2-43 (44)
173 KOG1129 TPR repeat-containing 96.9 0.0032 7E-08 67.2 8.7 110 413-530 280-389 (478)
174 KOG2376 Signal recognition par 96.9 0.079 1.7E-06 60.3 19.3 135 427-570 83-258 (652)
175 COG0457 NrfG FOG: TPR repeat [ 96.9 0.028 6E-07 50.0 13.0 98 425-530 169-267 (291)
176 KOG4162 Predicted calmodulin-b 96.8 0.015 3.3E-07 67.5 13.7 133 427-570 654-788 (799)
177 KOG0495 HAT repeat protein [RN 96.8 0.053 1.1E-06 62.4 17.2 103 422-532 684-786 (913)
178 COG0457 NrfG FOG: TPR repeat [ 96.8 0.075 1.6E-06 47.2 15.1 107 420-531 92-199 (291)
179 COG4105 ComL DNA uptake lipopr 96.7 0.032 7E-07 57.8 14.0 75 462-536 34-108 (254)
180 COG1729 Uncharacterized protei 96.7 0.014 3.1E-07 60.7 11.3 101 465-566 144-245 (262)
181 PF15015 NYD-SP12_N: Spermatog 96.7 0.015 3.2E-07 63.9 11.4 126 425-554 178-319 (569)
182 COG4235 Cytochrome c biogenesi 96.6 0.036 7.8E-07 58.5 13.9 86 438-531 137-225 (287)
183 KOG1308 Hsp70-interacting prot 96.6 0.00096 2.1E-08 71.3 1.9 86 475-566 127-212 (377)
184 COG4785 NlpI Lipoprotein NlpI, 96.6 0.0078 1.7E-07 61.3 8.1 84 457-543 60-143 (297)
185 KOG1156 N-terminal acetyltrans 96.4 0.036 7.8E-07 63.5 13.1 104 421-532 39-142 (700)
186 PRK10153 DNA-binding transcrip 96.4 0.015 3.2E-07 66.1 9.8 65 424-494 421-485 (517)
187 KOG2376 Signal recognition par 96.4 0.034 7.5E-07 63.2 12.4 101 422-534 45-145 (652)
188 PF06552 TOM20_plant: Plant sp 96.3 0.012 2.6E-07 58.3 7.5 52 438-494 50-112 (186)
189 KOG1941 Acetylcholine receptor 96.0 0.16 3.5E-06 55.2 14.7 218 289-534 16-241 (518)
190 PF13428 TPR_14: Tetratricopep 96.0 0.016 3.5E-07 43.5 5.3 41 425-470 3-43 (44)
191 PF13181 TPR_8: Tetratricopept 96.0 0.012 2.5E-07 41.2 4.2 31 500-530 2-32 (34)
192 PF13181 TPR_8: Tetratricopept 96.0 0.0095 2.1E-07 41.6 3.7 32 463-494 2-33 (34)
193 KOG1127 TPR repeat-containing 96.0 0.14 3E-06 61.3 15.0 104 422-531 525-628 (1238)
194 PLN03218 maturation of RBCL 1; 95.9 1.4 3.1E-05 54.5 24.3 95 425-529 686-784 (1060)
195 PLN03081 pentatricopeptide (PP 95.9 0.93 2E-05 52.9 21.5 93 426-528 363-455 (697)
196 PRK15331 chaperone protein Sic 95.8 0.071 1.5E-06 52.1 10.2 97 462-564 37-133 (165)
197 PF13174 TPR_6: Tetratricopept 95.8 0.015 3.3E-07 40.0 4.1 32 500-531 1-32 (33)
198 KOG1130 Predicted G-alpha GTPa 95.8 0.017 3.6E-07 63.4 6.3 105 423-528 17-124 (639)
199 KOG0545 Aryl-hydrocarbon recep 95.8 0.17 3.8E-06 52.6 13.2 99 385-494 198-296 (329)
200 PLN03218 maturation of RBCL 1; 95.8 1.2 2.6E-05 55.1 22.7 133 425-568 651-786 (1060)
201 KOG0551 Hsp90 co-chaperone CNS 95.7 0.032 7E-07 59.8 8.0 98 436-534 55-154 (390)
202 PF09295 ChAPs: ChAPs (Chs5p-A 95.7 0.14 3E-06 56.5 13.2 86 436-532 182-267 (395)
203 PLN03081 pentatricopeptide (PP 95.7 0.83 1.8E-05 53.4 20.1 94 424-524 392-487 (697)
204 KOG3785 Uncharacterized conser 95.6 0.091 2E-06 57.0 10.7 53 429-486 63-115 (557)
205 KOG4642 Chaperone-dependent E3 95.5 0.018 4E-07 59.3 5.2 64 465-531 13-76 (284)
206 PF10300 DUF3808: Protein of u 95.5 0.12 2.7E-06 58.0 12.2 104 422-530 266-378 (468)
207 PF10602 RPN7: 26S proteasome 95.4 0.43 9.3E-06 46.8 14.1 103 424-528 37-142 (177)
208 smart00028 TPR Tetratricopepti 95.3 0.023 5E-07 36.5 3.4 31 464-494 3-33 (34)
209 PF04733 Coatomer_E: Coatomer 95.3 0.14 3.1E-06 54.0 10.9 96 428-533 136-235 (290)
210 PRK04841 transcriptional regul 95.2 0.19 4E-06 59.8 13.1 105 426-530 455-562 (903)
211 KOG4814 Uncharacterized conser 95.2 1.1 2.5E-05 51.8 18.3 101 425-528 356-457 (872)
212 KOG4340 Uncharacterized conser 95.1 0.059 1.3E-06 57.3 7.4 96 422-522 143-264 (459)
213 COG3118 Thioredoxin domain-con 95.1 0.45 9.7E-06 50.6 13.8 106 425-538 136-275 (304)
214 KOG0376 Serine-threonine phosp 95.1 0.03 6.5E-07 62.3 5.4 68 462-532 4-71 (476)
215 PLN03077 Protein ECB2; Provisi 95.0 2.1 4.4E-05 51.3 21.0 97 422-525 553-651 (857)
216 smart00028 TPR Tetratricopepti 94.8 0.05 1.1E-06 34.8 3.9 32 500-531 2-33 (34)
217 PRK04841 transcriptional regul 94.8 0.27 5.9E-06 58.5 12.8 104 426-529 494-603 (903)
218 KOG3785 Uncharacterized conser 94.7 0.088 1.9E-06 57.1 7.5 86 432-524 31-116 (557)
219 KOG2796 Uncharacterized conser 94.3 0.56 1.2E-05 49.4 12.0 110 423-535 212-322 (366)
220 KOG1941 Acetylcholine receptor 94.2 0.16 3.6E-06 55.2 8.3 78 459-536 80-159 (518)
221 PF00514 Arm: Armadillo/beta-c 94.2 0.064 1.4E-06 39.7 3.7 39 125-164 3-41 (41)
222 PF13176 TPR_7: Tetratricopept 94.1 0.072 1.6E-06 38.5 3.8 25 465-489 2-26 (36)
223 KOG3824 Huntingtin interacting 94.1 0.17 3.8E-06 54.0 8.1 101 422-530 115-219 (472)
224 KOG4340 Uncharacterized conser 94.1 0.36 7.9E-06 51.5 10.3 105 420-529 41-174 (459)
225 COG2976 Uncharacterized protei 94.0 0.5 1.1E-05 47.6 10.7 100 425-530 91-190 (207)
226 PF03704 BTAD: Bacterial trans 94.0 0.46 9.9E-06 43.9 9.8 62 423-489 62-123 (146)
227 COG4700 Uncharacterized protei 93.9 1.1 2.5E-05 45.2 12.8 124 432-565 65-189 (251)
228 PF04781 DUF627: Protein of un 93.8 0.35 7.7E-06 44.4 8.5 95 429-528 2-107 (111)
229 PLN03077 Protein ECB2; Provisi 93.8 5.4 0.00012 47.8 20.9 94 424-527 626-719 (857)
230 PF14853 Fis1_TPR_C: Fis1 C-te 93.7 0.18 3.8E-06 40.4 5.6 31 501-531 3-33 (53)
231 PF14853 Fis1_TPR_C: Fis1 C-te 93.6 0.26 5.6E-06 39.4 6.4 40 463-505 2-41 (53)
232 COG2912 Uncharacterized conser 93.6 0.17 3.8E-06 53.0 6.9 76 457-535 176-251 (269)
233 KOG2053 Mitochondrial inherita 93.6 0.9 1.9E-05 54.2 13.2 92 432-531 18-109 (932)
234 PF13176 TPR_7: Tetratricopept 93.5 0.075 1.6E-06 38.4 2.9 30 501-530 1-30 (36)
235 COG3071 HemY Uncharacterized e 93.4 0.62 1.3E-05 51.1 10.9 92 429-531 269-360 (400)
236 PF13174 TPR_6: Tetratricopept 93.3 0.12 2.6E-06 35.4 3.6 31 464-494 2-32 (33)
237 KOG2610 Uncharacterized conser 93.3 3.2 7E-05 45.2 15.7 93 428-523 108-233 (491)
238 cd00020 ARM Armadillo/beta-cat 93.2 0.26 5.7E-06 42.7 6.5 81 76-168 2-82 (120)
239 KOG2796 Uncharacterized conser 93.1 0.21 4.5E-06 52.6 6.5 68 423-495 252-319 (366)
240 PF04184 ST7: ST7 protein; In 93.1 1.7 3.6E-05 49.3 13.9 109 414-525 193-321 (539)
241 PF02259 FAT: FAT domain; Int 92.9 4 8.7E-05 42.6 15.9 105 423-530 184-340 (352)
242 PRK10941 hypothetical protein; 92.8 1.6 3.4E-05 46.0 12.6 78 423-508 181-258 (269)
243 PF10579 Rapsyn_N: Rapsyn N-te 92.8 0.64 1.4E-05 40.4 7.9 68 422-491 5-72 (80)
244 KOG3081 Vesicle coat complex C 92.5 6 0.00013 41.9 16.0 96 422-528 175-270 (299)
245 COG4976 Predicted methyltransf 92.1 0.2 4.3E-06 51.7 4.7 59 432-495 4-62 (287)
246 PF14561 TPR_20: Tetratricopep 91.8 0.52 1.1E-05 41.4 6.5 57 480-539 6-62 (90)
247 PF12862 Apc5: Anaphase-promot 91.8 0.64 1.4E-05 40.7 7.0 35 500-534 42-76 (94)
248 KOG4507 Uncharacterized conser 91.4 0.52 1.1E-05 54.0 7.5 91 435-532 619-709 (886)
249 COG3071 HemY Uncharacterized e 91.4 3.5 7.6E-05 45.4 13.5 89 432-527 127-215 (400)
250 PF14561 TPR_20: Tetratricopep 91.3 2 4.3E-05 37.8 9.6 75 442-524 7-83 (90)
251 COG4976 Predicted methyltransf 91.3 0.29 6.2E-06 50.6 4.8 59 471-532 4-62 (287)
252 KOG1915 Cell cycle control pro 91.2 5.2 0.00011 45.4 14.7 109 415-531 65-173 (677)
253 KOG1070 rRNA processing protei 90.8 17 0.00038 45.9 19.6 133 426-569 1533-1667(1710)
254 smart00185 ARM Armadillo/beta- 90.4 0.4 8.8E-06 34.4 3.8 38 126-164 4-41 (41)
255 PF13374 TPR_10: Tetratricopep 90.0 0.53 1.2E-05 33.6 4.1 30 462-491 2-31 (42)
256 PF12862 Apc5: Anaphase-promot 89.9 1.4 3.1E-05 38.5 7.5 63 432-494 7-73 (94)
257 KOG3081 Vesicle coat complex C 89.7 4.3 9.3E-05 43.0 11.8 95 430-534 144-242 (299)
258 KOG1586 Protein required for f 89.6 30 0.00065 36.4 19.9 173 344-536 53-232 (288)
259 PF10300 DUF3808: Protein of u 89.4 1.9 4.1E-05 48.6 9.8 91 435-530 245-336 (468)
260 KOG2396 HAT (Half-A-TPR) repea 88.7 36 0.00078 39.1 18.8 86 441-534 89-175 (568)
261 PF09986 DUF2225: Uncharacteri 88.6 5.3 0.00012 40.5 11.5 99 432-530 86-196 (214)
262 KOG3824 Huntingtin interacting 88.2 2 4.3E-05 46.3 8.3 73 462-537 116-188 (472)
263 KOG2471 TPR repeat-containing 88.1 1.4 3E-05 49.9 7.3 108 422-529 239-365 (696)
264 PF04184 ST7: ST7 protein; In 87.7 29 0.00063 39.8 17.3 100 426-531 262-378 (539)
265 KOG3364 Membrane protein invol 87.3 6.4 0.00014 37.9 10.3 86 462-556 32-121 (149)
266 KOG1070 rRNA processing protei 86.3 23 0.00049 45.0 16.6 97 426-531 1500-1596(1710)
267 PF07079 DUF1347: Protein of u 85.2 76 0.0016 36.3 21.0 52 469-524 469-520 (549)
268 PF02259 FAT: FAT domain; Int 84.9 53 0.0011 34.2 22.1 109 422-531 145-290 (352)
269 PF13374 TPR_10: Tetratricopep 84.8 2.1 4.6E-05 30.4 4.7 31 423-453 2-32 (42)
270 PF05843 Suf: Suppressor of fo 84.5 15 0.00033 38.4 12.7 99 425-531 37-139 (280)
271 PF08631 SPO22: Meiosis protei 84.5 12 0.00026 39.0 11.8 106 421-530 33-152 (278)
272 KOG2053 Mitochondrial inherita 83.7 14 0.0003 44.7 12.9 98 424-530 44-141 (932)
273 PF05843 Suf: Suppressor of fo 83.1 7.5 0.00016 40.6 9.7 98 426-531 4-102 (280)
274 COG3898 Uncharacterized membra 82.9 38 0.00082 38.0 14.9 144 425-608 122-267 (531)
275 KOG1586 Protein required for f 82.8 8.3 0.00018 40.3 9.5 106 426-531 76-186 (288)
276 PF10602 RPN7: 26S proteasome 82.2 10 0.00022 37.2 9.7 85 458-542 32-116 (177)
277 KOG4507 Uncharacterized conser 82.0 3.9 8.4E-05 47.3 7.4 92 436-533 226-317 (886)
278 KOG3364 Membrane protein invol 81.3 15 0.00033 35.4 10.0 60 438-504 50-110 (149)
279 KOG0530 Protein farnesyltransf 81.1 45 0.00098 35.6 14.2 157 437-605 57-222 (318)
280 PF10516 SHNi-TPR: SHNi-TPR; 80.8 2.4 5.2E-05 31.7 3.6 29 500-528 2-30 (38)
281 KOG0686 COP9 signalosome, subu 80.8 22 0.00048 39.8 12.3 101 425-527 152-257 (466)
282 cd00020 ARM Armadillo/beta-cat 80.4 2.9 6.2E-05 36.1 4.7 95 58-164 25-120 (120)
283 KOG1915 Cell cycle control pro 80.3 14 0.0003 42.1 10.8 98 422-528 403-500 (677)
284 KOG2471 TPR repeat-containing 80.1 2.6 5.6E-05 47.8 5.1 87 422-511 282-381 (696)
285 COG3898 Uncharacterized membra 79.9 13 0.00027 41.6 10.1 97 431-531 196-295 (531)
286 PF09613 HrpB1_HrpK: Bacterial 78.6 34 0.00075 33.5 11.8 100 422-530 9-108 (160)
287 COG2976 Uncharacterized protei 77.8 49 0.0011 33.7 12.8 100 463-566 90-189 (207)
288 COG2912 Uncharacterized conser 77.5 18 0.00039 38.3 10.1 74 426-507 184-257 (269)
289 KOG1585 Protein required for f 77.2 47 0.001 35.2 12.8 107 421-528 108-219 (308)
290 COG3629 DnrI DNA-binding trans 77.1 27 0.00058 37.2 11.4 80 439-528 137-216 (280)
291 PF10516 SHNi-TPR: SHNi-TPR; 76.8 3 6.6E-05 31.2 3.1 30 463-492 2-31 (38)
292 PF10373 EST1_DNA_bind: Est1 D 76.8 8.3 0.00018 39.1 7.4 62 442-511 1-62 (278)
293 COG3914 Spy Predicted O-linked 76.4 12 0.00026 43.4 9.0 96 429-532 73-175 (620)
294 KOG1585 Protein required for f 73.7 20 0.00042 37.9 9.0 103 425-527 73-178 (308)
295 PRK13184 pknD serine/threonine 72.8 32 0.00069 42.4 12.0 100 429-534 481-587 (932)
296 PF04212 MIT: MIT (microtubule 72.8 8.8 0.00019 31.6 5.3 31 422-452 4-34 (69)
297 COG3914 Spy Predicted O-linked 69.5 34 0.00073 39.9 10.5 124 435-565 42-167 (620)
298 PLN03200 cellulose synthase-in 69.1 6.2 0.00013 51.8 5.2 96 59-164 208-312 (2102)
299 KOG3617 WD40 and TPR repeat-co 68.7 21 0.00046 43.1 8.9 103 422-527 818-940 (1416)
300 PF13646 HEAT_2: HEAT repeats; 68.5 6.1 0.00013 32.9 3.5 60 100-172 8-67 (88)
301 PF10255 Paf67: RNA polymerase 68.0 61 0.0013 36.3 12.0 131 431-566 130-267 (404)
302 cd02682 MIT_AAA_Arch MIT: doma 67.7 11 0.00024 32.5 4.8 31 422-452 5-35 (75)
303 PRK15180 Vi polysaccharide bio 66.9 1.2E+02 0.0027 34.9 13.9 94 429-530 295-388 (831)
304 cd02680 MIT_calpain7_2 MIT: do 66.4 8.5 0.00018 33.1 3.9 33 422-454 5-37 (75)
305 KOG2300 Uncharacterized conser 65.6 2.6E+02 0.0057 32.4 20.6 105 419-529 363-475 (629)
306 PF12968 DUF3856: Domain of Un 65.5 39 0.00085 32.1 8.3 69 422-491 54-129 (144)
307 COG3947 Response regulator con 65.2 22 0.00048 38.3 7.5 63 462-527 279-341 (361)
308 PF09986 DUF2225: Uncharacteri 64.0 40 0.00087 34.2 9.0 73 422-494 124-197 (214)
309 cd02683 MIT_1 MIT: domain cont 62.9 14 0.0003 31.7 4.6 31 422-452 5-35 (77)
310 cd02681 MIT_calpain7_1 MIT: do 62.8 15 0.00033 31.6 4.8 31 422-452 5-35 (76)
311 PF14863 Alkyl_sulf_dimr: Alky 62.6 22 0.00048 34.0 6.4 50 423-477 70-119 (141)
312 KOG2047 mRNA splicing factor [ 61.7 3.5E+02 0.0076 32.5 21.2 111 416-528 504-615 (835)
313 PF02985 HEAT: HEAT repeat; I 61.6 6.7 0.00014 27.4 2.1 30 135-165 1-30 (31)
314 PF04910 Tcf25: Transcriptiona 61.5 1E+02 0.0022 33.8 12.1 92 449-546 32-150 (360)
315 COG3629 DnrI DNA-binding trans 61.2 48 0.001 35.3 9.2 64 422-490 152-215 (280)
316 PF10579 Rapsyn_N: Rapsyn N-te 61.2 20 0.00044 31.3 5.3 64 465-528 9-72 (80)
317 cd02678 MIT_VPS4 MIT: domain c 60.5 19 0.00041 30.4 5.0 32 421-452 4-35 (75)
318 PF07079 DUF1347: Protein of u 60.0 57 0.0012 37.2 9.8 58 424-487 463-520 (549)
319 PF08631 SPO22: Meiosis protei 60.0 49 0.0011 34.5 9.1 88 433-520 3-105 (278)
320 PF09670 Cas_Cas02710: CRISPR- 59.9 1.1E+02 0.0024 33.7 12.1 66 422-490 130-197 (379)
321 PF07721 TPR_4: Tetratricopept 59.7 12 0.00025 25.1 2.9 22 501-522 3-24 (26)
322 PF07721 TPR_4: Tetratricopept 59.3 9.9 0.00022 25.5 2.5 24 463-486 2-25 (26)
323 KOG0529 Protein geranylgeranyl 59.3 3.1E+02 0.0066 31.0 17.0 166 431-607 36-232 (421)
324 PF10255 Paf67: RNA polymerase 59.2 16 0.00034 40.8 5.5 63 466-529 126-194 (404)
325 PF14668 RICTOR_V: Rapamycin-i 58.5 9.9 0.00021 32.5 2.9 40 150-191 2-41 (73)
326 TIGR02561 HrpB1_HrpK type III 58.4 1.2E+02 0.0027 29.6 10.7 84 425-516 12-95 (153)
327 PF08424 NRDE-2: NRDE-2, neces 58.3 86 0.0019 33.5 10.8 83 439-529 47-132 (321)
328 PF14863 Alkyl_sulf_dimr: Alky 57.5 27 0.00058 33.5 6.0 55 462-519 70-124 (141)
329 KOG3617 WD40 and TPR repeat-co 57.4 45 0.00097 40.6 8.8 27 426-452 915-941 (1416)
330 PF08424 NRDE-2: NRDE-2, neces 57.3 99 0.0021 33.1 11.0 80 444-531 6-97 (321)
331 PF11207 DUF2989: Protein of u 57.2 37 0.00081 34.6 7.2 75 440-519 123-198 (203)
332 cd02684 MIT_2 MIT: domain cont 56.8 18 0.00039 30.8 4.3 32 421-452 4-35 (75)
333 PF11817 Foie-gras_1: Foie gra 56.6 65 0.0014 33.1 9.2 85 441-525 156-244 (247)
334 smart00745 MIT Microtubule Int 55.9 26 0.00056 29.3 5.1 31 422-452 7-37 (77)
335 PF07720 TPR_3: Tetratricopept 55.8 34 0.00075 25.2 5.0 31 425-455 3-35 (36)
336 KOG2047 mRNA splicing factor [ 55.1 1.3E+02 0.0027 36.0 11.7 142 422-567 424-581 (835)
337 KOG2114 Vacuolar assembly/sort 55.0 40 0.00087 40.7 8.0 31 422-452 367-397 (933)
338 cd02656 MIT MIT: domain contai 54.7 28 0.0006 29.1 5.0 31 422-452 5-35 (75)
339 KOG1464 COP9 signalosome, subu 53.5 29 0.00063 37.2 6.0 55 474-528 39-94 (440)
340 PF11817 Foie-gras_1: Foie gra 53.1 49 0.0011 34.0 7.6 65 425-489 180-245 (247)
341 PF07720 TPR_3: Tetratricopept 52.0 40 0.00086 24.8 4.9 31 500-530 2-34 (36)
342 KOG1550 Extracellular protein 51.9 1.4E+02 0.0031 34.5 11.8 92 426-529 291-394 (552)
343 KOG3616 Selective LIM binding 51.8 1.2E+02 0.0026 36.6 11.0 101 403-522 746-847 (1636)
344 cd02682 MIT_AAA_Arch MIT: doma 51.0 21 0.00045 30.8 3.7 27 500-526 7-33 (75)
345 PLN03200 cellulose synthase-in 50.5 33 0.00072 45.5 7.0 122 32-166 5-130 (2102)
346 KOG1464 COP9 signalosome, subu 50.4 2.9E+02 0.0063 29.9 12.6 119 428-546 150-278 (440)
347 PF04781 DUF627: Protein of un 50.2 24 0.00052 32.6 4.2 50 439-493 60-109 (111)
348 KOG0530 Protein farnesyltransf 49.9 2.1E+02 0.0045 30.8 11.4 87 439-533 94-181 (318)
349 KOG2300 Uncharacterized conser 49.5 4.8E+02 0.01 30.4 15.3 99 422-521 45-149 (629)
350 KOG2041 WD40 repeat protein [G 49.4 4.9E+02 0.011 31.7 15.2 82 423-524 796-877 (1189)
351 PF10373 EST1_DNA_bind: Est1 D 49.1 36 0.00077 34.5 5.8 45 481-528 1-45 (278)
352 COG2909 MalT ATP-dependent tra 49.1 2.3E+02 0.005 34.8 13.0 102 422-523 457-563 (894)
353 KOG1839 Uncharacterized protei 48.7 1.3E+02 0.0028 38.2 11.2 143 420-564 970-1120(1236)
354 TIGR02710 CRISPR-associated pr 48.7 2.5E+02 0.0054 31.4 12.4 62 425-486 132-195 (380)
355 PHA02537 M terminase endonucle 47.8 2.5E+02 0.0055 29.1 11.7 99 433-531 93-210 (230)
356 KOG0546 HSP90 co-chaperone CPR 47.7 14 0.0003 40.6 2.6 64 426-494 278-341 (372)
357 COG3118 Thioredoxin domain-con 47.1 72 0.0016 34.4 7.8 80 434-523 113-192 (304)
358 PF06957 COPI_C: Coatomer (COP 46.7 26 0.00057 39.3 4.7 103 425-530 206-331 (422)
359 COG5159 RPN6 26S proteasome re 46.2 4.3E+02 0.0094 28.9 18.7 103 428-530 130-237 (421)
360 KOG4814 Uncharacterized conser 46.1 47 0.001 39.3 6.6 72 462-533 354-428 (872)
361 smart00386 HAT HAT (Half-A-TPR 46.1 46 0.001 21.8 4.3 28 437-469 1-28 (33)
362 PF10508 Proteasom_PSMB: Prote 45.8 1.4E+02 0.003 34.1 10.4 187 77-317 239-444 (503)
363 KOG1550 Extracellular protein 45.6 81 0.0017 36.4 8.6 88 436-528 262-357 (552)
364 PF13281 DUF4071: Domain of un 44.8 4.9E+02 0.011 29.1 16.0 86 439-530 242-336 (374)
365 KOG2610 Uncharacterized conser 43.5 76 0.0016 35.1 7.3 91 433-528 185-276 (491)
366 KOG0890 Protein kinase of the 42.9 8E+02 0.017 33.7 17.1 100 424-529 1630-1732(2382)
367 TIGR03504 FimV_Cterm FimV C-te 42.5 40 0.00086 26.1 3.7 25 466-490 3-27 (44)
368 cd02677 MIT_SNX15 MIT: domain 42.5 45 0.00098 28.5 4.5 31 422-452 5-35 (75)
369 PF02064 MAS20: MAS20 protein 42.0 89 0.0019 29.3 6.7 38 419-456 59-96 (121)
370 COG4941 Predicted RNA polymera 41.7 1.2E+02 0.0026 33.5 8.4 87 437-530 310-396 (415)
371 PF10952 DUF2753: Protein of u 41.3 92 0.002 29.7 6.6 97 425-530 3-114 (140)
372 COG5191 Uncharacterized conser 40.6 35 0.00077 37.2 4.3 82 444-533 94-176 (435)
373 PF11846 DUF3366: Domain of un 40.6 90 0.0019 30.5 7.0 48 479-530 128-175 (193)
374 COG0790 FOG: TPR repeat, SEL1 39.6 3.9E+02 0.0084 27.3 11.8 96 425-529 111-221 (292)
375 COG4455 ImpE Protein of avirul 39.6 1.4E+02 0.0031 31.3 8.2 58 471-531 10-67 (273)
376 PF13281 DUF4071: Domain of un 39.4 5.8E+02 0.013 28.4 14.9 96 432-531 150-258 (374)
377 TIGR03504 FimV_Cterm FimV C-te 39.1 48 0.001 25.6 3.7 26 503-528 3-28 (44)
378 PF13513 HEAT_EZ: HEAT-like re 39.0 32 0.00068 26.5 2.8 49 112-162 7-55 (55)
379 KOG0292 Vesicle coat complex C 37.9 2.8E+02 0.0061 34.3 11.3 107 422-531 990-1116(1202)
380 PF05804 KAP: Kinesin-associat 37.7 71 0.0015 38.3 6.6 101 57-172 307-407 (708)
381 COG3947 Response regulator con 37.6 1.5E+02 0.0033 32.2 8.4 58 425-487 281-338 (361)
382 TIGR00985 3a0801s04tom mitocho 36.3 2.6E+02 0.0057 27.2 9.1 36 421-456 88-124 (148)
383 PRK13184 pknD serine/threonine 36.2 1.6E+02 0.0035 36.5 9.5 104 423-534 519-626 (932)
384 PF07219 HemY_N: HemY protein 36.0 1.9E+02 0.004 26.0 7.7 51 422-477 58-108 (108)
385 PF10345 Cohesin_load: Cohesin 34.0 4.4E+02 0.0096 30.7 12.3 115 422-537 58-177 (608)
386 COG0790 FOG: TPR repeat, SEL1 33.7 2.5E+02 0.0055 28.7 9.4 88 429-528 47-142 (292)
387 COG4455 ImpE Protein of avirul 33.3 2.5E+02 0.0054 29.6 8.8 60 430-494 8-67 (273)
388 COG2909 MalT ATP-dependent tra 33.3 9.9E+02 0.021 29.7 14.9 117 410-529 405-527 (894)
389 KOG0985 Vesicle coat protein c 32.7 2.8E+02 0.0061 35.0 10.3 91 425-528 1196-1308(1666)
390 PF13646 HEAT_2: HEAT repeats; 32.5 31 0.00066 28.6 1.9 30 136-165 1-30 (88)
391 PF11207 DUF2989: Protein of u 31.6 1.1E+02 0.0023 31.3 5.9 50 432-482 149-198 (203)
392 cd02680 MIT_calpain7_2 MIT: do 31.5 1.7E+02 0.0036 25.2 6.2 31 501-531 8-38 (75)
393 PF05804 KAP: Kinesin-associat 31.4 1.7E+02 0.0036 35.3 8.3 144 42-195 470-648 (708)
394 KOG1310 WD40 repeat protein [G 30.3 57 0.0012 37.9 4.0 64 426-494 411-477 (758)
395 COG5159 RPN6 26S proteasome re 29.8 3.4E+02 0.0073 29.7 9.3 102 427-528 7-154 (421)
396 PF12641 Flavodoxin_3: Flavodo 29.5 72 0.0016 31.0 4.2 62 7-78 91-153 (160)
397 PF09613 HrpB1_HrpK: Bacterial 29.0 3.5E+02 0.0077 26.6 8.8 70 460-532 8-77 (160)
398 KOG4563 Cell cycle-regulated h 28.8 1.1E+02 0.0024 34.0 5.8 63 421-483 39-104 (400)
399 PRK15180 Vi polysaccharide bio 27.4 3.4E+02 0.0073 31.6 9.3 129 475-612 302-433 (831)
400 PF04212 MIT: MIT (microtubule 26.5 1.3E+02 0.0027 24.6 4.6 29 500-528 6-34 (69)
401 KOG2396 HAT (Half-A-TPR) repea 26.3 1E+03 0.022 27.8 12.8 70 435-509 117-187 (568)
402 PF11846 DUF3366: Domain of un 26.1 2E+02 0.0044 28.0 6.7 50 439-494 127-176 (193)
403 KOG1839 Uncharacterized protei 24.8 1.5E+02 0.0032 37.7 6.5 107 421-528 930-1044(1236)
404 PF09205 DUF1955: Domain of un 24.4 4.6E+02 0.01 25.7 8.3 62 464-528 87-149 (161)
405 KOG1538 Uncharacterized conser 23.8 5.8E+02 0.013 30.8 10.5 45 475-525 786-830 (1081)
406 KOG3616 Selective LIM binding 23.7 3.9E+02 0.0084 32.7 9.1 98 428-525 666-791 (1636)
407 KOG0529 Protein geranylgeranyl 23.7 4.5E+02 0.0098 29.7 9.4 85 438-530 90-180 (421)
408 PF04910 Tcf25: Transcriptiona 23.5 1E+03 0.022 26.2 12.2 105 422-530 102-224 (360)
409 cd02681 MIT_calpain7_1 MIT: do 23.1 1.4E+02 0.0031 25.6 4.4 29 500-528 7-35 (76)
410 KOG4056 Translocase of outer m 22.9 1.9E+02 0.0041 28.0 5.5 36 421-456 79-114 (143)
411 PRK09687 putative lyase; Provi 22.8 56 0.0012 34.4 2.2 62 100-167 62-123 (280)
412 PF04826 Arm_2: Armadillo-like 22.7 2.2E+02 0.0048 29.8 6.6 79 101-182 22-101 (254)
413 cd02683 MIT_1 MIT: domain cont 22.6 1.4E+02 0.0031 25.5 4.2 28 500-527 7-34 (77)
414 PF07631 PSD4: Protein of unkn 22.4 76 0.0016 29.8 2.8 51 103-156 74-124 (128)
415 PF12854 PPR_1: PPR repeat 22.3 1.8E+02 0.0039 20.6 4.1 27 498-524 6-32 (34)
416 cd02679 MIT_spastin MIT: domai 22.0 1.6E+02 0.0035 25.6 4.5 30 423-452 8-37 (79)
417 PF02841 GBP_C: Guanylate-bind 20.9 1.4E+02 0.0031 31.5 4.9 119 117-241 1-127 (297)
418 COG5624 TAF61 Transcription in 20.3 40 0.00088 37.6 0.6 21 100-120 447-468 (505)
No 1
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=7.6e-19 Score=172.48 Aligned_cols=156 Identities=32% Similarity=0.395 Sum_probs=134.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHH
Q 047433 404 KREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS 483 (614)
Q Consensus 404 erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~ 483 (614)
+.++ .|++++...++..+..+|..||.+|+.|+|++|...|++||++||..+.++++++|+|||.|+++++.++.||.
T Consensus 78 e~E~--i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 78 EIEK--IFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHH--hcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 6677 89999998899999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh-----hcchHHHHHHHHHHHHHHHHH
Q 047433 484 DATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK-----RVKIPYYAARMISKHMNALWV 558 (614)
Q Consensus 484 D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~-----k~kl~~y~~r~i~Kqmea~~l 558 (614)
||++||+|+|. +.+|+.|||.+|..+.+|++|+.||.+.++.+|....... ..++...-.+|....|.+...
T Consensus 156 dcsKaiel~pt---y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKd 232 (271)
T KOG4234|consen 156 DCSKAIELNPT---YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKD 232 (271)
T ss_pred HHHhhHhcCch---hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999996543221 123444444555555666555
Q ss_pred Hhhhhh
Q 047433 559 FGGARS 564 (614)
Q Consensus 559 F~~Ai~ 564 (614)
|...+-
T Consensus 233 lGN~iL 238 (271)
T KOG4234|consen 233 LGNFIL 238 (271)
T ss_pred hhhhhc
Confidence 555443
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=4.7e-19 Score=182.46 Aligned_cols=108 Identities=29% Similarity=0.283 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc
Q 047433 418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS 497 (614)
Q Consensus 418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~ 497 (614)
+....|+.+|.+||.+.+.++|++|+..|++||+++|.+ +++|.|||++|.+||.|+.||+||..||.+||.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-----AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--- 147 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-----AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--- 147 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHhcchHHHHHHHHHHHhcChH---
Confidence 455699999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
+.|+|-|+|.||+.+|++++|+..|+++|+++|+.+
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 999999999999999999999999999999999644
No 3
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.73 E-value=1.5e-16 Score=166.20 Aligned_cols=254 Identities=17% Similarity=0.131 Sum_probs=187.5
Q ss_pred hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHH---
Q 047433 297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALL--- 373 (614)
Q Consensus 297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl--- 373 (614)
.|+.+|-.+|+.-|+-= +-+-.|+|+|++|+++..+++||+.+.+|+++ |+.+++
T Consensus 56 DALt~yHaAve~dp~~Y---------------~aifrRaT~yLAmGksk~al~Dl~rVlelKpD-------F~~ARiQRg 113 (504)
T KOG0624|consen 56 DALTHYHAAVEGDPNNY---------------QAIFRRATVYLAMGKSKAALQDLSRVLELKPD-------FMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHcCCchhH---------------HHHHHHHHHHhhhcCCccchhhHHHHHhcCcc-------HHHHHHHhc
Confidence 47888888998887632 33456999999999999999999999999999 666655
Q ss_pred -------------Hhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 047433 374 -------------LDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEI 439 (614)
Q Consensus 374 -------------~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdy 439 (614)
.||..+.. .|++....++-.++... ..-..+.++...++..||+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~----------------------~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI----------------------QEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH----------------------HHHHHHHHHHHHHhcCCch
Confidence 35555444 44443333322221111 1222567777888999999
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHH
Q 047433 440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESL 519 (614)
Q Consensus 440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL 519 (614)
..||+..++.|+++|++ +.+|.-||.||+..|++..||.|.+.|-+|..+ ++.++|..++.++..|+.++++
T Consensus 172 ~~ai~~i~~llEi~~Wd-----a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D---nTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWD-----ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD---NTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hhHHHHHHHHHhcCcch-----hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc---chHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999 999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHhhcchHHHHH-HHHHHHHHH------HHHHhhhhh-------cCCCCCCCCccCCcCCcccch
Q 047433 520 MDCIMFINGCIRSETTSKRVKIPYYAA-RMISKHMNA------LWVFGGARS-------KILSSPVNNVQESYGENKSGI 585 (614)
Q Consensus 520 ~df~kALkl~P~~~D~~~k~kl~~y~~-r~i~Kqmea------~~lF~~Ai~-------k~~~~~~~~~~e~~~~~~~g~ 585 (614)
...++||+++| +++.++++|.. +.+.|.++. ...|.+.++ ..+..++...+.......+..
T Consensus 244 ~~iRECLKldp-----dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 244 KEIRECLKLDP-----DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHccCc-----chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 99999999976 55677776643 223333321 122333322 233334445555445556666
Q ss_pred hhhHHHHHHHHHHhcccccCCc
Q 047433 586 EEQRYCDMIRTMMEKKNLISGK 607 (614)
Q Consensus 586 ~eQ~~dD~iral~~~~~~~~g~ 607 (614)
..+.+.++|+...+--++.|..
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~d 340 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDD 340 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchH
Confidence 6677777777666666666653
No 4
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.7e-15 Score=165.30 Aligned_cols=105 Identities=26% Similarity=0.238 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433 419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH 498 (614)
Q Consensus 419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~ 498 (614)
.++.+...+.+||.+|+.|+|..|+..||+||..+|++ +.+|+|||.||.++|.+..|++||+.+|+++|+ +
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D-----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~---~ 425 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED-----ARLYSNRAACYLKLGEYPEALKDAKKCIELDPN---F 425 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch---H
Confidence 34467889999999999999999999999999999999 999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
.++|+|.|.|+..+.+|+.|++.|+++++++|+
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999884
No 5
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.7e-15 Score=161.54 Aligned_cols=145 Identities=20% Similarity=0.180 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------CcchhHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 047433 418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR----------PKNERMVLYSNRAQCHLLLREPDAAISDATR 487 (614)
Q Consensus 418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~----------~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ 487 (614)
+++..|...++.||.+|+.|+|..|+..|.+|+..-+.. ....+..+|+|+|.||+|+++|.+||..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 466789999999999999999999999999999876542 1235678999999999999999999999999
Q ss_pred HHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047433 488 ALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKIL 567 (614)
Q Consensus 488 ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~ 567 (614)
+|+++|+ |.||+||||+|+..+|+|+.|..+|++++++.|++.+ ++..+..+..+.....-.....|.+++.+..
T Consensus 283 vLe~~~~---N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka--~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 283 VLELDPN---NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA--ARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHhcCCC---chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999 9999999999999999999999999999999997543 3444443333333322233566777776653
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.66 E-value=6.6e-16 Score=170.06 Aligned_cols=289 Identities=14% Similarity=0.069 Sum_probs=222.7
Q ss_pred ccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHH
Q 047433 293 KTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITR 370 (614)
Q Consensus 293 ~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~ 370 (614)
..|| +|.+-|.++|+..|.|| -..-.++|++..-++.-....-+.+++..-|.+..-+ -++|..+..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fA-----iawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAY------iNLGnV~ke 264 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFA-----IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAY------INLGNVYKE 264 (966)
T ss_pred hhcccchhHHHHHHHHhhCCcee-----eeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHH------hhHHHHHHH
Confidence 4566 68888999999999998 6667789999988888888888888887777776665 556655544
Q ss_pred HHH-----Hhhhhhhh-ccCcHHHHHHHHHH------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047433 371 ALL-----LDYKLTEQ-KFKNKKVQKALEEI------WELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGE 438 (614)
Q Consensus 371 aLl-----~dy~~~~~-~p~n~e~~~aL~el------~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gd 438 (614)
+.. ..|..... .|+...+.-.+.-+ .++-..-.++.. .++ +.-..++.+.||++-..|+
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral--~~~-------P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL--ELQ-------PNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH--hcC-------CCchHHHhHHHHHHHhccc
Confidence 433 45665555 67777766555321 222212233333 333 3345578889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHH
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRES 518 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEA 518 (614)
..+|+.+|.+||.++|+. +.+.+|+|.+|..+|.+++|+..|..|++..|. ...++-++|.+|..+|++++|
T Consensus 336 V~ea~~cYnkaL~l~p~h-----adam~NLgni~~E~~~~e~A~~ly~~al~v~p~---~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCPNH-----ADAMNNLGNIYREQGKIEEATRLYLKALEVFPE---FAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred hHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhccchHHHHHHHHHHhhChh---hhhhhhhHHHHHHhcccHHHH
Confidence 999999999999999998 999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHH
Q 047433 519 LMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMM 598 (614)
Q Consensus 519 L~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~ 598 (614)
+..|++++.+.|.-.|+-.+..-. ...+++-..+...|.+||.-.+.-...+.+-.....+.|+-.++++.+..++.
T Consensus 408 i~~YkealrI~P~fAda~~NmGnt---~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 408 IMCYKEALRIKPTFADALSNMGNT---YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHhcCchHHHHHHhcchH---HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999998776665554433 23455556677788888888777777788777778888999999999999999
Q ss_pred hcccccCCcccccc
Q 047433 599 EKKNLISGKLCAIH 612 (614)
Q Consensus 599 ~~~~~~~g~~~~~~ 612 (614)
.+|+|-.-+-|..|
T Consensus 485 lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 485 LKPDFPDAYCNLLH 498 (966)
T ss_pred cCCCCchhhhHHHH
Confidence 99999887777666
No 7
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6e-16 Score=167.22 Aligned_cols=127 Identities=29% Similarity=0.372 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433 410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL 489 (614)
Q Consensus 410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL 489 (614)
+++.++. .+.|..+|.+||.+|+.|+|++||.+|++||++||+. +++|+|||+||..+|+|++.++||++||
T Consensus 105 a~~~e~~---~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-----piFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 105 AMLKEER---LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-----PIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred ccChHHH---HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-----chhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 4555443 5689999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHH
Q 047433 490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKH 552 (614)
Q Consensus 490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kq 552 (614)
+++|+ ++||++||+.|+..+|+++||+.|..-..-+.- -. +..+.-.+.|.++++
T Consensus 177 El~P~---Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~-F~----n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 177 ELNPD---YVKALLRRASAHEQLGKFDEALFDVTVLCILEG-FQ----NASIEPMAERVLKKQ 231 (606)
T ss_pred hcCcH---HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhh-cc----cchhHHHHHHHHHHH
Confidence 99999 999999999999999999999999877655521 11 223333566666655
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=160.72 Aligned_cols=303 Identities=12% Similarity=-0.046 Sum_probs=223.0
Q ss_pred hhHHHHhhhcccchhhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhh-hhhccCCC
Q 047433 283 VGLIRILCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVE-LNSLLDRP 361 (614)
Q Consensus 283 ~~~~~~~~~~~~~~~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLse-L~~Lg~~~ 361 (614)
|||---|-...-|-.|+..|.++|...|.+. -..--.|.|+.-.+.-.+.+.-|-|++..-+-++= +..||--.
T Consensus 154 inla~al~~~~~~~~a~~~~~~alqlnP~l~-----ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f 228 (966)
T KOG4626|consen 154 INLAAALVTQGDLELAVQCFFEALQLNPDLY-----CARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF 228 (966)
T ss_pred hhHHHHHHhcCCCcccHHHHHHHHhcCcchh-----hhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH
Confidence 3443333333444478888999999999887 56667788888777777788888888887776643 33344432
Q ss_pred cCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 047433 362 KNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEE 441 (614)
Q Consensus 362 k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdyee 441 (614)
+..|+ +-.+++..++.++.+|+...+.-.|..+.+.- .+..+.- ......+..++..|..+-+.|-.++.+|+.+-
T Consensus 229 ~~~Ge-i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~-~~~d~Av--s~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 229 NAQGE-IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEA-RIFDRAV--SCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred hhcch-HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHH-hcchHHH--HHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 33333 23344433333333787777777776655422 0122222 22222233445567778888888899999999
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 047433 442 AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMD 521 (614)
Q Consensus 442 AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~d 521 (614)
||..|.+||++.|.. ..+|+|+|.++-..|+..+|...|++||.+.|+ +..+.+++|.++.++|++++|...
T Consensus 305 AI~~Ykral~~~P~F-----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 305 AIDTYKRALELQPNF-----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred HHHHHHHHHhcCCCc-----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhccchHHHHH
Confidence 999999999999999 999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcc
Q 047433 522 CIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKK 601 (614)
Q Consensus 522 f~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~ 601 (614)
|+++++..|+-..+. ..+. ...+..++--.+...|.+|++.++.-.....+.++...+.|....++.+++|+|..||
T Consensus 377 y~~al~v~p~~aaa~--nNLa-~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 377 YLKALEVFPEFAAAH--NNLA-SIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHHhhChhhhhhh--hhHH-HHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999999988655443 3333 2333444445677889999988877778888889999999999999999999999999
Q ss_pred cccC
Q 047433 602 NLIS 605 (614)
Q Consensus 602 ~~~~ 605 (614)
.|..
T Consensus 454 t~Ae 457 (966)
T KOG4626|consen 454 TFAE 457 (966)
T ss_pred HHHH
Confidence 8854
No 9
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.57 E-value=4.4e-15 Score=155.22 Aligned_cols=106 Identities=27% Similarity=0.256 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433 419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH 498 (614)
Q Consensus 419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~ 498 (614)
.+..+.+++++||.+|++|.|++||.+|+++|.++|.+ +++|.|||.+|+++++|..|..||+.|+.||.. +
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-----pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---Y 164 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN-----PVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---Y 164 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC-----ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH---H
Confidence 35577789999999999999999999999999999999 999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
+|||-|||.+...||+.+||.+|++.+|.+.|++
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 9999999999999999999999999999999963
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.9e-14 Score=155.82 Aligned_cols=166 Identities=17% Similarity=0.153 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
+..++.+||.+|..|||+.||..||+||.++|.+ .++|+||+.||.++|+|++|++|.++.++++|+ ++|+|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n-----hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~---w~kgy 73 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN-----HVLYSNRSAAYASLGSYEKALKDATKTRRLNPD---WAKGY 73 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc-----cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc---hhhHH
Confidence 4578999999999999999999999999999999 999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK 582 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~ 582 (614)
.|+|.++..+|+|++|+..|.+.|+.+|+++ .....+..-. +..... ...|. .+.-+..-.++....
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~--~L~~gl~~a~-~~~~~~---~~~~~-------~p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNK--QLKTGLAQAY-LEDYAA---DQLFT-------KPYFHEKLANLPLTN 140 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcCCchH--HHHHhHHHhh-hHHHHh---hhhcc-------CcHHHHHhhcChhhh
Confidence 9999999999999999999999999988422 2122222100 001000 11111 111122222333444
Q ss_pred cchhhhHHHHHHHHHHhcccccCCccc
Q 047433 583 SGIEEQRYCDMIRTMMEKKNLISGKLC 609 (614)
Q Consensus 583 ~g~~eQ~~dD~iral~~~~~~~~g~~~ 609 (614)
.......+-.++..++.+|...-+|.+
T Consensus 141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 141 YSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred hhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 445556777788888888877776654
No 11
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.3e-14 Score=148.98 Aligned_cols=108 Identities=29% Similarity=0.268 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433 419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH 498 (614)
Q Consensus 419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~ 498 (614)
.++..+.++++||.+|+.|+|..|.+.||+||.++|.+ .+..+.+|.|||.+.+++|+..+||.||+.|++|||. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s---y 320 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS---Y 320 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH---H
Confidence 34566789999999999999999999999999999995 7788999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
.|||.+||.|+..++++++|++||++|+++..
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999965
No 12
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3e-13 Score=136.65 Aligned_cols=154 Identities=22% Similarity=0.207 Sum_probs=123.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCC-----cchhHHHHHHH
Q 047433 402 RRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGV--------CPSRP-----KNERMVLYSNR 468 (614)
Q Consensus 402 r~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel--------~P~~~-----~~~~a~lysNR 468 (614)
...++.| .||+++. .+....+.++||.+|+.|+|.+|+..|..||.. .|.+. ......++.|.
T Consensus 161 qYq~e~W-qlsddeK---mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy 236 (329)
T KOG0545|consen 161 QYQRETW-QLSDDEK---MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNY 236 (329)
T ss_pred hhccccc-cCCchHh---hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhH
Confidence 4466777 8887764 357778999999999999999999999999964 34431 13346789999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHH
Q 047433 469 AQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARM 548 (614)
Q Consensus 469 A~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~ 548 (614)
++|+++.|+|.+++..|..+|..+|. +.|||||||.|+....+..||.+||.++|+++|.-.. .....+.....|+
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~---nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas-vVsrElr~le~r~ 312 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPG---NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS-VVSRELRLLENRM 312 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999884322 2234555566666
Q ss_pred HHHHHHHHHHHhhhh
Q 047433 549 ISKHMNALWVFGGAR 563 (614)
Q Consensus 549 i~Kqmea~~lF~~Ai 563 (614)
..|+.+..-.|++.+
T Consensus 313 ~ek~~edr~~~~kmf 327 (329)
T KOG0545|consen 313 AEKQEEDRLRCRKMF 327 (329)
T ss_pred HHhhhHHHHHHHHhc
Confidence 666666655555543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=8.4e-12 Score=141.60 Aligned_cols=174 Identities=14% Similarity=0.040 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK 500 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K 500 (614)
..+..+...|..++..|++++|+..|.++|+++|.. ...|.++|.++..+|++++|+.+++++++++|+ +..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~ 400 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPD 400 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHH
Confidence 456678888999999999999999999999999988 889999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGE 580 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~ 580 (614)
+|+.+|.++..+|++++|+.+|++++++.|++.... ..+. .+....++.-++...|.+++...+..+.....-+...
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~--~~la-~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH--IQLG-VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH--HHHH-HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999999999999988533221 1111 1111222334455666766665544444333444455
Q ss_pred cccchhhhHHHHHHHHHHhcccccC
Q 047433 581 NKSGIEEQRYCDMIRTMMEKKNLIS 605 (614)
Q Consensus 581 ~~~g~~eQ~~dD~iral~~~~~~~~ 605 (614)
...|..+++...+.+++...|+..+
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCcccc
Confidence 5566677777777788887776543
No 14
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.46 E-value=9e-14 Score=150.88 Aligned_cols=131 Identities=21% Similarity=0.161 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.++.++.++|.+|+.++|+.|+..|++||+++|+. +.++.|||+++++.++|..|+.|+.+||+++|. +.|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc-----a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---~~K~ 74 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC-----AIYFANRALAHLKVESFGGALHDALKAIELDPT---YIKA 74 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc-----eeeechhhhhheeechhhhHHHHHHhhhhcCch---hhhe
Confidence 46689999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS 568 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~ 568 (614)
|+|+|.+...++++.+|+.+|+....+.|+ ++++..++. -++.+.....|+.++.-...
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn--d~~~~r~~~------Ec~~~vs~~~fe~ai~~~~~ 133 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPN--DPDATRKID------ECNKIVSEEKFEKAILTPEG 133 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcC--cHHHHHHHH------HHHHHHHHHhhhhcccCCcc
Confidence 999999999999999999999999999994 566666766 44556666678888776543
No 15
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.45 E-value=1.2e-12 Score=139.95 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
..++.+|+.+|..|+|++|+..|++||+++|++ +.+|.|||.+|+++|++++|+.++++|+.++|. +..+|+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~---~~~a~~ 74 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANIKLGNFTEAVADANKAIELDPS---LAKAYL 74 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHH
Confidence 458889999999999999999999999999999 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
++|.+|+.+|+|++|+..|++++++.|++
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999953
No 16
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.7e-13 Score=140.55 Aligned_cols=104 Identities=25% Similarity=0.207 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.|..+|+.||.+|+.++|..|+..||++|+..-.+ +...+++|+|||+|.+.+|+|..||.||.+|++++|. |.|+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~---h~Ka 155 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT---HLKA 155 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhhh
Confidence 67899999999999999999999999999986553 6778999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
|||-|+|+++|.++.+|+..++..+..+
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999998887763
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.41 E-value=4.1e-12 Score=119.09 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.+...|..++..|+|++|+..|.+++.++|.+ ..+|.++|.++..+|++++|+..|+++++++|+ +..++++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~ 97 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS-----WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQ 97 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHH
Confidence 46678999999999999999999999999999 999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 505 RSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 505 RA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
+|.++..+|++++|+..|++++++.|++.+
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999996544
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.37 E-value=6.7e-11 Score=135.97 Aligned_cols=285 Identities=9% Similarity=-0.042 Sum_probs=174.7
Q ss_pred cch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHH--
Q 047433 294 TGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAIT-- 369 (614)
Q Consensus 294 ~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it-- 369 (614)
.|+ .|+..++++++..|+-+ ..+..++.++...++.+.+...+++++...+|..++... ++....
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~-----~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~------la~~l~~~ 157 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQP-----EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFAL------HLRTLVLM 157 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH------HHHHHHHC
Confidence 565 79999999999999887 567778888889999999999999998888886665421 111110
Q ss_pred ---HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHH
Q 047433 370 ---RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEM-RVLVGLIKQEAKHLFWLGEIEEAAM 444 (614)
Q Consensus 370 ---~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~-~~~A~~lK~~GN~lFk~GdyeeAI~ 444 (614)
......|..... .|++......+..+.. ..+.+..+.....-+... ..........|..++..|++++|+.
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCLSFLN----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 000112222111 3444444332211111 001111000000000000 0001122345677888888888888
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHH----HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 047433 445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDA----AISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLM 520 (614)
Q Consensus 445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyee----AI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~ 520 (614)
.|.+++++.|++ ..++.++|.+|..+|++++ |+..++++++++|+ +..++..+|.++..+|++++|+.
T Consensus 234 ~~~~al~~~p~~-----~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 234 TGESALARGLDG-----AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD---NVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHhcCCCC-----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888 8888888888888888885 78888888888888 88888888888888888888888
Q ss_pred HHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhc
Q 047433 521 DCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEK 600 (614)
Q Consensus 521 df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~ 600 (614)
.+++++++.|++.+. ...+. .+....++.-++...|..++...+..+.............|..+++...+.+++...
T Consensus 306 ~l~~al~l~P~~~~a--~~~La-~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 306 LLQQSLATHPDLPYV--RAMYA-RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHhCCCCHHH--HHHHH-HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888888888853322 22111 111122333344555665555544332222222333456677777777777788877
Q ss_pred cccc
Q 047433 601 KNLI 604 (614)
Q Consensus 601 ~~~~ 604 (614)
|+..
T Consensus 383 P~~~ 386 (656)
T PRK15174 383 ASHL 386 (656)
T ss_pred hhhc
Confidence 7754
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=3.2e-11 Score=136.87 Aligned_cols=254 Identities=7% Similarity=-0.105 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHhh---cccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHH
Q 047433 297 KNIAECKQVIENL---CNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALL 373 (614)
Q Consensus 297 ~aia~~~~~i~~l---c~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl 373 (614)
+|+..+.++++.- ++.+ +.+..++.+...+++.+.+...+++++..-++..... ..+|..
T Consensus 312 ~A~~~~~~al~~~~~~~~~a-----~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~------~~la~~------ 374 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEA-----IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY------IKRASM------ 374 (615)
T ss_pred HHHHHHHHHHhcCCCChhhH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------HHHHHH------
Confidence 6888888888753 5555 7788889999999999999998888877655443322 111111
Q ss_pred HhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047433 374 LDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVC 453 (614)
Q Consensus 374 ~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~ 453 (614)
|.. ..+...++..+.... .+ .+..+..+...|..++..|+|++|+..|+++++++
T Consensus 375 --~~~------~g~~~eA~~~~~~al----------~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 375 --NLE------LGDPDKAEEDFDKAL----------KL-------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred --HHH------CCCHHHHHHHHHHHH----------Hh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 100 011112222222111 11 11234578899999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 454 PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 454 P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
|++ ..++.++|.++.++|++++|+..++++++++|+ +..+++.+|.++..+|++++|+..|++++++.|+..
T Consensus 430 P~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 430 PDF-----IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE---APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred ccC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 999 899999999999999999999999999999999 999999999999999999999999999999998643
Q ss_pred ChHhhcchHHH-----HHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcc
Q 047433 534 TTSKRVKIPYY-----AARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKK 601 (614)
Q Consensus 534 D~~~k~kl~~y-----~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~ 601 (614)
.... ...+.+ ..+..+...++...+.+++..++................|..++++..+.+++...+
T Consensus 502 ~~~~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 502 PMYM-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred cccc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 3211 111101 011123334455667777666543332222333344455666666666666665554
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.4e-11 Score=130.93 Aligned_cols=289 Identities=15% Similarity=0.105 Sum_probs=192.0
Q ss_pred HHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCc
Q 047433 287 RILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNL 364 (614)
Q Consensus 287 ~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~l 364 (614)
|.-||..+|. +-|..|-++++..|.-+ -.|-.|..++..+++...+|-|++-+--++.= .+.
T Consensus 155 raAcY~~lgd~~~Vied~TkALEl~P~Y~---------------KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F-~n~ 218 (606)
T KOG0547|consen 155 RAACYESLGDWEKVIEDCTKALELNPDYV---------------KALLRRASAHEQLGKFDEALFDVTVLCILEGF-QNA 218 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCcHHH---------------HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhc-ccc
Confidence 6679999997 67888999999999877 22334777888888888888887766544332 111
Q ss_pred -------------------------------HHHHHHHHHHhhhhhhh----cc---CcHHHHHHHHHHHHHHHHHHHHH
Q 047433 365 -------------------------------GEAITRALLLDYKLTEQ----KF---KNKKVQKALEEIWELKVERRKRE 406 (614)
Q Consensus 365 -------------------------------Ge~it~aLl~dy~~~~~----~p---~n~e~~~aL~el~~lkvEr~erE 406 (614)
...++..-...|..... .+ ..+....++..+.....|.....
T Consensus 219 s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a 298 (606)
T KOG0547|consen 219 SIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKA 298 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHH
Confidence 11222222222222111 11 22223333333322110111111
Q ss_pred Hh-----hcCCHHHH------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc
Q 047433 407 KM-----MMMSEEKV------EEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL 475 (614)
Q Consensus 407 k~-----~~ls~eel------~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL 475 (614)
.. ..++...+ .+....+..+...|.-+|-.|++.+|-+.+.++|+++|.. ..+|..||..|+..
T Consensus 299 ~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-----~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 299 YDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-----NSLYIKRAAAYADE 373 (606)
T ss_pred HHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-----chHHHHHHHHHhhh
Confidence 10 01111111 1123468889999999999999999999999999999998 78899999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHH
Q 047433 476 REPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNA 555 (614)
Q Consensus 476 GdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea 555 (614)
.+.++-..|++.|..+||. ++..||.||+.+.-+++|++|+.||++++.++|.+.-+..+.+...|- ..+-.+.
T Consensus 374 ~~~~~~~~~F~~A~~ldp~---n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr---~~k~~~~ 447 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPE---NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR---QHKIAES 447 (606)
T ss_pred hccHHHHHHHHHHHhcCCC---CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH---HHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999655554333332222 2233344
Q ss_pred HHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhccc
Q 047433 556 LWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKN 602 (614)
Q Consensus 556 ~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~ 602 (614)
...|.+++.+=+..+...+--.....+++...++.+.+..+|.+-|.
T Consensus 448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 56788888877665554443333444455555555555667777766
No 21
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=1.4e-11 Score=128.25 Aligned_cols=103 Identities=17% Similarity=0.032 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+.++|..+...|++++|+..|+++++++|++ +.+|+++|.++..+|++++|+..++++++++|+ +..+
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a 134 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYA 134 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 45679999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
++++|.+++..|++++|+.+|+++++..|++
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999853
No 22
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.8e-11 Score=123.45 Aligned_cols=99 Identities=22% Similarity=0.205 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..++++||.+|....|..||..|++||.++|.. +.+|.|||.||+++++++.+..||.+|++++|+ .+|+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~-----~~Y~tnralchlk~~~~~~v~~dcrralql~~N---~vk~ 80 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV-----ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN---LVKA 80 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCc-----chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH---HHHH
Confidence 56789999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+|-+|+++.....|++|+..++++..+
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999999999655
No 23
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.23 E-value=1.7e-10 Score=104.43 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+......|..++..|++++|+..|++++..+|++ ..++.++|.++.++|++++|+..++++++++|. +...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~ 87 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---DPRP 87 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ChHH
Confidence 34568889999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
++.+|.++..+|++++|+..|++++++.|+..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 88 YFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999998543
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.21 E-value=2e-09 Score=121.86 Aligned_cols=168 Identities=10% Similarity=-0.058 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
....+...|..++..|++++|+..|.+++...|+. ..+.+++.++.++|++++|+..+.++++.+|+ +..+
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~ 772 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN---DAVL 772 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 44567778999999999999999999999999875 56788999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCc
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGEN 581 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~ 581 (614)
++.+|.++..+|++++|+..|+++++..|+ ++.....+. +.....++ .++...+.+++...+..+.....-.....
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~-~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPD--NAVVLNNLA-WLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCC--CHHHHHHHH-HHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999885 333222222 22222222 34566677776665444333222233334
Q ss_pred ccchhhhHHHHHHHHHHhccc
Q 047433 582 KSGIEEQRYCDMIRTMMEKKN 602 (614)
Q Consensus 582 ~~g~~eQ~~dD~iral~~~~~ 602 (614)
..+..+++...+.+++..+|.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCC
Confidence 566777788888888888876
No 25
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=3.7e-10 Score=108.28 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=100.6
Q ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433 410 MMS-EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA 488 (614)
Q Consensus 410 ~ls-~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A 488 (614)
.++ .++++ .+...|..++..|++++|...|+-...++|++ +..|.|+|.|+-.+|+|.+||..|.+|
T Consensus 28 ~~~~~~~l~-------~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 28 DDDVTQPLN-------TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----FDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred CCChHHHHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566 55554 89999999999999999999999999999999 999999999999999999999999999
Q ss_pred HhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 489 LCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 489 LeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
+.++|+ ++.++++.|.|+..+|+.+.|.+.|+.++..+-
T Consensus 96 ~~L~~d---dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 96 AQIKID---APQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999 999999999999999999999999999999983
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.19 E-value=3.4e-09 Score=119.93 Aligned_cols=222 Identities=15% Similarity=0.088 Sum_probs=133.9
Q ss_pred Hhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcH
Q 047433 288 ILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLG 365 (614)
Q Consensus 288 ~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lG 365 (614)
..++...|+ +|+..+.++++..|+-. ..+..++.++...++.+.+...+.++....++..... ..++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~la 506 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNA-----SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA------ANLA 506 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCc-----HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHH------HHHH
Confidence 334444554 67777777777666543 4566777788888888888888888776555433322 1111
Q ss_pred HHHH-----HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 047433 366 EAIT-----RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEI 439 (614)
Q Consensus 366 e~it-----~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdy 439 (614)
.... ......|..... .|.+..+...+..+.... .+.+... ..-.+-....+.....+...+..+...|++
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT-GNEEEAV--AWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc-CCHHHHH--HHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 1000 001112222222 344444443333332111 0000000 000011111122234456677777788888
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHH
Q 047433 440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESL 519 (614)
Q Consensus 440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL 519 (614)
++|+..|.++++..|.+ ..++.+++.++...|++++|+..++++++++|. +..+++.+|.++..+|++++|+
T Consensus 584 ~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 584 KKALAILNEAADAAPDS-----PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD---SALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888877777 778888888888888888888888888888887 7788888888888888888888
Q ss_pred HHHHHHHHcCCC
Q 047433 520 MDCIMFINGCIR 531 (614)
Q Consensus 520 ~df~kALkl~P~ 531 (614)
..|+++++..|+
T Consensus 656 ~~~~~~~~~~~~ 667 (899)
T TIGR02917 656 TSLKRALELKPD 667 (899)
T ss_pred HHHHHHHhcCCC
Confidence 888888888775
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.17 E-value=4.2e-09 Score=121.30 Aligned_cols=255 Identities=12% Similarity=-0.038 Sum_probs=167.1
Q ss_pred hhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhcc----CCCcC
Q 047433 290 CYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLL----DRPKN 363 (614)
Q Consensus 290 ~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg----~~~k~ 363 (614)
.+...|+ +|+..+.++++..|+.. +.+..+..++...++.+....++.+.....++........ .. .+
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~-----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~-g~ 192 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNS-----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNK-SR 192 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc-CC
Confidence 3455666 79999999999988876 7788888899999999998888877766555544332110 00 00
Q ss_pred cHHHHHHHHHHhhhhhhh-cc-CcHHHHHHHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 047433 364 LGEAITRALLLDYKLTEQ-KF-KNKKVQKALEE-IWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIE 440 (614)
Q Consensus 364 lGe~it~aLl~dy~~~~~-~p-~n~e~~~aL~e-l~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~Gdye 440 (614)
..++ + ..|..... .+ ........+.. +.... +.+..+..-..-+...+..+..+...|..++..|+++
T Consensus 193 ~~eA----~-~~~~~~l~~~~~~~~~~~~~l~~~l~~~g----~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 193 LPED----H-DLARALLPFFALERQESAGLAVDTLCAVG----KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHH----H-HHHHHHHhcCCCcchhHHHHHHHHHHHCC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch
Confidence 0111 0 01111111 11 11111111110 00000 0011000011111112234557788999999999998
Q ss_pred H----HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433 441 E----AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR 516 (614)
Q Consensus 441 e----AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye 516 (614)
+ |+..|+++++++|++ +.++.++|.++.++|++++|+..++++++++|+ +..+++.+|.++..+|+++
T Consensus 264 eA~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDN-----VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD---LPYVRAMYARALRQVGQYT 335 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHH
Confidence 6 899999999999999 999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433 517 ESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSP 570 (614)
Q Consensus 517 EAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~ 570 (614)
+|+..|+++++..|+.... ..... ......++.-++...|..++...+...
T Consensus 336 eA~~~l~~al~~~P~~~~~--~~~~a-~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 336 AASDEFVQLAREKGVTSKW--NRYAA-AALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHhCccchHH--HHHHH-HHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999998853321 11111 122334455566777888877765543
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.16 E-value=2.1e-09 Score=128.54 Aligned_cols=224 Identities=9% Similarity=-0.040 Sum_probs=149.9
Q ss_pred hhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHH
Q 047433 289 LCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGE 366 (614)
Q Consensus 289 ~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe 366 (614)
.|+.. |+ +|+..+.+++...|+ +|...++.-.+.-.++.+.....+.++...-++......++.-....|+
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~~Pd------~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd 557 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQRQPD------AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCC
Confidence 44444 55 589989999988875 4778888888888888888888877754432222211111100000000
Q ss_pred HHHHHHHHhhhhhhh-ccCcHHHHHHHHHHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 047433 367 AITRALLLDYKLTEQ-KFKNKKVQKALEEIW-ELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAM 444 (614)
Q Consensus 367 ~it~aLl~dy~~~~~-~p~n~e~~~aL~el~-~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~ 444 (614)
. .. ....|..... .|......-.+.... ... +.+... ..-.+-++..+. +..+...|..+.+.|++++|+.
T Consensus 558 ~-~e-A~~~l~qAL~l~P~~~~l~~~La~~l~~~G--r~~eAl--~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 558 G-AA-RDRWLQQAEQRGLGDNALYWWLHAQRYIPG--QPELAL--NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred H-HH-HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--CHHHHH--HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 0 00 0011111111 222222222221111 000 000111 111111222222 5578899999999999999999
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433 445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIM 524 (614)
Q Consensus 445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~k 524 (614)
.|.++++++|++ +.++.|+|.++..+|++++|+..+++|++++|+ +..+++.+|.++..+|++++|+..|++
T Consensus 631 ~l~~AL~l~Pd~-----~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~---~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 631 DLRAALELEPNN-----SNYQAALGYALWDSGDIAQSREMLERAHKGLPD---DPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHcCCCCCC
Q 047433 525 FINGCIRSET 534 (614)
Q Consensus 525 ALkl~P~~~D 534 (614)
++++.|+..+
T Consensus 703 Al~l~P~~a~ 712 (987)
T PRK09782 703 VIDDIDNQAL 712 (987)
T ss_pred HHhcCCCCch
Confidence 9999996554
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=1.1e-09 Score=103.78 Aligned_cols=103 Identities=15% Similarity=-0.064 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+...|..++..|++++|+..|.++++..|.+ ..++.+++.++...|++++|+..+.+++...+. +.....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 137 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-PQPARS 137 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-ccchHH
Confidence 34445555555555555555555555555555555 455555555555555555555555555543211 013445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
++.+|.++...|++++|...|.++++..|
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55555555555555555555555555554
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=1.9e-08 Score=106.12 Aligned_cols=290 Identities=14% Similarity=0.029 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHH------HH
Q 047433 297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAI------TR 370 (614)
Q Consensus 297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~i------t~ 370 (614)
+|+..++++++..|+.. ..+..++.++...++.+.+...++++... ++.......... ..+|..+ ..
T Consensus 53 ~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~-~~La~~~~~~g~~~~ 125 (389)
T PRK11788 53 KAIDLFIEMLKVDPETV-----ELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLAL-QELGQDYLKAGLLDR 125 (389)
T ss_pred HHHHHHHHHHhcCcccH-----HHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHH-HHHHHHHHHCCCHHH
Confidence 69999999998877544 46777888888888888877777665432 111100000000 0011111 11
Q ss_pred HHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 047433 371 ALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEE-----MRVLVGLIKQEAKHLFWLGEIEEAAM 444 (614)
Q Consensus 371 aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~-----~~~~A~~lK~~GN~lFk~GdyeeAI~ 444 (614)
++ ..|..... .+.+..+...+..+.... .+.+..+..-..-... ....+..+...|..++..|++++|+.
T Consensus 126 A~-~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 126 AE-ELFLQLVDEGDFAEGALQQLLEIYQQE---KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HH-HHHHHHHcCCcchHHHHHHHHHHHHHh---chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 11 12222211 233333333333322211 1111100000000000 00123346678889999999999999
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433 445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH-CKSLWRRSQAYDMKGLGRESLMDCI 523 (614)
Q Consensus 445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~-~KAyyRRA~Al~~LG~yeEAL~df~ 523 (614)
.|.++++..|+. ..++..+|.+|.+.|++++|+..++++++.+|. + ..++..++.+|..+|++++|+..++
T Consensus 202 ~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 202 LLKKALAADPQC-----VRASILLGDLALAQGDYAAAIEALERVEEQDPE---YLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHhHCcCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh---hHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988 889999999999999999999999999999988 5 4678889999999999999999999
Q ss_pred HHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcC--CcccchhhhHHHHHHHHHHhcc
Q 047433 524 MFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYG--ENKSGIEEQRYCDMIRTMMEKK 601 (614)
Q Consensus 524 kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~--~~~~g~~eQ~~dD~iral~~~~ 601 (614)
++++..|+.. . -..+. ......++.-++...|.+++...+..+.....-... ....|...+.++.+.+.++...
T Consensus 274 ~~~~~~p~~~--~-~~~la-~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEEYPGAD--L-LLALA-QLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHhCCCch--H-HHHHH-HHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 9999988431 1 11111 111112233455566777766643322211100000 1112344456665655555555
Q ss_pred cccCCccc
Q 047433 602 NLISGKLC 609 (614)
Q Consensus 602 ~~~~g~~~ 609 (614)
...|.+.|
T Consensus 350 ~~~p~~~c 357 (389)
T PRK11788 350 KRKPRYRC 357 (389)
T ss_pred hCCCCEEC
Confidence 55565654
No 31
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=5.2e-10 Score=117.75 Aligned_cols=104 Identities=19% Similarity=0.137 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+....+.|++++..|++..|+..|..||+.+|++ -.+++.||.+|+.+|+-..|+.|++++|++.|+ ..-|
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F~~A 108 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---FMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---HHHH
Confidence 45588999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
-..||.++.++|++++|..||+.+|+.+|...
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999544
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.09 E-value=2.7e-10 Score=92.29 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCC
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSN 493 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP 493 (614)
.|..+...|..++..|+|++|+..|+++|+++|++ +.+|.|+|.||.++| ++++|+.++++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-----AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-----HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36689999999999999999999999999999999 999999999999999 79999999999999998
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.08 E-value=9.8e-09 Score=125.02 Aligned_cols=66 Identities=20% Similarity=0.026 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
..+..+|+.+...|++++|+..|+++++++|++ +.++.++|.+|.++|++++|+..++++++++|.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-----~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~ 527 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGS-----VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN 527 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 346678889999999999999999999999998 888899999999999999999999998888886
No 34
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.08 E-value=2.3e-09 Score=100.13 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-Ccc
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSH 498 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~ 498 (614)
++.+..+-.+|..+-..|+.++|++.|+++|.++|.. +.+|+|||+++...|+.++|+.|.++|+++..+. ...
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-----aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPER-----ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-----hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH
Confidence 4467788889999999999999999999999999999 9999999999999999999999999999998762 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
..+|..||..|..+|+-+.|..||..+.++-
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 5799999999999999999999999999994
No 35
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.08 E-value=2e-09 Score=85.70 Aligned_cols=98 Identities=23% Similarity=0.214 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.+...|..++..|++++|+..++++++..|.. ..++.++|.++...+++++|+..+++++.+.|. +..+++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---chhHHHH
Confidence 36678999999999999999999999999988 789999999999999999999999999999999 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 505 RSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 505 RA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
+|.++...|++++|...+.++++..|
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 99999999999999999999999876
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=1.9e-09 Score=106.64 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHH-HHcCC--cHHHHHHHHHHHhcCCCCC
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCH-LLLRE--PDAAISDATRALCLSNPPN 496 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~y-lkLGd--yeeAI~D~~~ALeLdP~~~ 496 (614)
+..+..|...|..+...|++++|+..|++|+.+.|++ +.++.+.|.++ ...|+ +++|+..++++++++|+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-----~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-- 142 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-----AELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-- 142 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--
Confidence 3466689999999999999999999999999999999 99999999985 77788 59999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
+..+++.+|.++.++|++++|+..+++++++.|..
T Consensus 143 -~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 143 -EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred -ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999998853
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.07 E-value=9.5e-09 Score=125.13 Aligned_cols=234 Identities=12% Similarity=0.035 Sum_probs=151.1
Q ss_pred hhHHHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhc--------hh
Q 047433 283 VGLIRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLID--------LV 352 (614)
Q Consensus 283 ~~~~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvD--------Ls 352 (614)
+.+++++... .|+ +|+..++++++..|+.. -.++.+..++...++.+.+...++++...-.+ +.
T Consensus 150 ~~y~~~~~~~-~g~~~~A~~~L~~ll~~~P~~~-----~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 150 VEYWRLVAKL-PAQRPEAINQLQRLNADYPGNT-----GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred HHHHHHHhhC-CccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 4456666643 455 69999999999999977 67889999998889989888888776432110 11
Q ss_pred hhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHH-----------------HHHHHHHHHhhcCCHHH
Q 047433 353 ELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWEL-----------------KVERRKREKMMMMSEEK 415 (614)
Q Consensus 353 eL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~l-----------------kvEr~erEk~~~ls~ee 415 (614)
.+..+... ......+...+ .. .+.......+...+... .....+.+..+..-.+-
T Consensus 224 ~l~~~~~~-~~~~~~l~~~l-~~------~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 224 QIKDMPVS-DASVAALQKYL-QV------FSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHhccCCC-hhhHHHHHHHH-HH------CCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11111111 11111111111 11 11111111111111000 00000111100111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcch---------hHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433 416 VEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE---------RMVLYSNRAQCHLLLREPDAAISDAT 486 (614)
Q Consensus 416 l~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~---------~a~lysNRA~~ylkLGdyeeAI~D~~ 486 (614)
++..+..+..+...|..+++.|++++|+..|+++++++|+..... ......+++.++++.|++++|+..++
T Consensus 296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223344566788999999999999999999999999999752211 11234567889999999999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
++++++|+ +..+++.+|.++..+|++++|+..|++++++.|++.
T Consensus 376 ~Al~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 376 QARQVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999 999999999999999999999999999999999654
No 38
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.04 E-value=7.5e-10 Score=89.72 Aligned_cols=66 Identities=17% Similarity=0.068 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG-LGRESLMDCIMFINGCI 530 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG-~yeEAL~df~kALkl~P 530 (614)
+..|.++|.+++.+|+|++|+..++++|+++|+ ++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 789999999999999999999999999999999 9999999999999999 79999999999999987
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.01 E-value=1.8e-08 Score=120.63 Aligned_cols=165 Identities=14% Similarity=-0.041 Sum_probs=122.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ 507 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~ 507 (614)
..+......|++++|+..|.++++++| + ..++.|+|.++.++|++++|+..++++++++|+ +..++..+|.
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd---~~~a~~nLG~ 651 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATIYRQRHNVPAAVSDLRAALELEPN---NSNYQAALGY 651 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence 345555667999999999999999999 4 689999999999999999999999999999999 9999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhh
Q 047433 508 AYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEE 587 (614)
Q Consensus 508 Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~e 587 (614)
++..+|++++|+..|++++++.|++. .....+. .+....++.-++...|++++..++................++-.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~P~~~--~a~~nLA-~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGLPDDP--ALIRQLA-YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999644 3333333 33333444456667788888776543333332222233333444
Q ss_pred hHHHHHHHHHHhccccc
Q 047433 588 QRYCDMIRTMMEKKNLI 604 (614)
Q Consensus 588 Q~~dD~iral~~~~~~~ 604 (614)
...+++.|...-+|+..
T Consensus 729 ~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 729 RLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHhhcCccch
Confidence 45555566555555543
No 40
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=8.3e-09 Score=90.00 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
+.+...|..++..|+|++|+..|.+++...|++ .....++.++|.++++.|+++.|+..+..++..+|+.+....+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS--TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 467889999999999999999999999998864 223578999999999999999999999999999998433468899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
..|.++..+|++++|+..++++++..|++
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999854
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=98.97 E-value=4.3e-09 Score=118.71 Aligned_cols=89 Identities=11% Similarity=-0.129 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y 515 (614)
.+++++|+..+.+|++++|++ +.++.++|.++...|++++|+..+++|++++|+ +..+|+.+|.++..+|++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNN-----PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMAGQL 388 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCH
Confidence 345677777777777777777 777777777777777777777777777777777 777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCC
Q 047433 516 RESLMDCIMFINGCIRS 532 (614)
Q Consensus 516 eEAL~df~kALkl~P~~ 532 (614)
++|+..|+++++++|.+
T Consensus 389 ~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 389 EEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 77777777777777753
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=2.5e-09 Score=119.92 Aligned_cols=177 Identities=12% Similarity=0.064 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC 499 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~ 499 (614)
+..++.|...||-+--+++++.||..+.+||.++|.. +-+|.-.|.=+....+|+.|...|+.||..+|. +.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-----aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r---hY 489 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-----AYAYTLLGHESIATEEFDKAMKSFRKALGVDPR---HY 489 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-----chhhhhcCChhhhhHHHHhHHHHHHhhhcCCch---hh
Confidence 3466789999999999999999999999999999999 899999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYG 579 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~ 579 (614)
.|||-+|.+|.++++++.|.-.|++|++++|.+.-- ...+. -.....++.-++...|++|+..++..+-...+..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi--~~~~g-~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~-- 564 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI--LCHIG-RIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA-- 564 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH--Hhhhh-HHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH--
Confidence 999999999999999999999999999999853321 11111 1122233334566788888888755443333222
Q ss_pred CcccchhhhHHHHHHHHHHhcccccCCccccc
Q 047433 580 ENKSGIEEQRYCDMIRTMMEKKNLISGKLCAI 611 (614)
Q Consensus 580 ~~~~g~~eQ~~dD~iral~~~~~~~~g~~~~~ 611 (614)
........+++..+.+.+-+...|..+++.
T Consensus 565 --~il~~~~~~~eal~~LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 565 --SILFSLGRYVEALQELEELKELVPQESSVF 594 (638)
T ss_pred --HHHHhhcchHHHHHHHHHHHHhCcchHHHH
Confidence 234444556666666666666666665543
No 43
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.93 E-value=1.3e-09 Score=114.89 Aligned_cols=106 Identities=26% Similarity=0.252 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc
Q 047433 418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS 497 (614)
Q Consensus 418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~ 497 (614)
+....+...+.++.+++..|++++||+.|+.||.++|.. +.+|.+|+.++++++++..||.||..|++++|+
T Consensus 109 e~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~-----a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D--- 180 (377)
T KOG1308|consen 109 EMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL-----AILYAKRASVFLKLKKPNAAIRDCDFAIEINPD--- 180 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch-----hhhcccccceeeeccCCchhhhhhhhhhccCcc---
Confidence 344577789999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
..+.|--||.++..+|++++|..|+..+++++-+
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999653
No 44
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=2.7e-08 Score=105.64 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCc--HHHHHHHH
Q 047433 410 MMSEEKVEEMRVLVGLIKQEAKHLFWLG-EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREP--DAAISDAT 486 (614)
Q Consensus 410 ~ls~eel~~~~~~A~~lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdy--eeAI~D~~ 486 (614)
.++.+-++..+.....|..+|..+...| ++++|+..++++|+.+|.+ ..+|++|+.++.++|+. ++++..++
T Consensus 58 ~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 58 DLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 4444445556667779999999999998 6899999999999999999 99999999999999984 78899999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT 535 (614)
Q Consensus 487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~ 535 (614)
++|++||. +..+|..|+.++..+|++++|++++.++++.+|.+..+
T Consensus 133 kal~~dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 133 KILSLDAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHhCcc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 99999999 99999999999999999999999999999999865543
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=98.92 E-value=4.8e-08 Score=110.27 Aligned_cols=101 Identities=6% Similarity=-0.140 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK 500 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K 500 (614)
..+..+...|..+...|++++|+..|.+|++++|++ +.++.++|.++..+|++++|+..++++++++|. +..
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~---~~~ 407 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT---RAA 407 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---Chh
Confidence 355678889999999999999999999999999999 999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
+++.++.+++.+|++++|+..++++++..
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 87778888999999999999999999875
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.89 E-value=1.1e-07 Score=100.49 Aligned_cols=176 Identities=11% Similarity=-0.070 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
....+...+..+.+.|++++|++.|.++++..|.........++.++|.++.+.|++++|+..++++++++|+ ...+
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 216 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ---CVRA 216 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC---CHHH
Confidence 4456788899999999999999999999998886533345567889999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCc
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGEN 581 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~ 581 (614)
++.+|.++...|++++|+..|+++++..|... ......+. .+....++.-++...+.+++...+..+ ..........
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~l~-~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~ 293 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYL-SEVLPKLM-ECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLE 293 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHH
Confidence 99999999999999999999999999876321 11111111 111122333444556666655543221 1122222333
Q ss_pred ccchhhhHHHHHHHHHHhcccc
Q 047433 582 KSGIEEQRYCDMIRTMMEKKNL 603 (614)
Q Consensus 582 ~~g~~eQ~~dD~iral~~~~~~ 603 (614)
..+..+++...+.+++...|+.
T Consensus 294 ~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 294 EQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HhCCHHHHHHHHHHHHHhCcCH
Confidence 4455556666666667666654
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.87 E-value=2.5e-07 Score=87.64 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVC--PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~--P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
.+...|..++..|++++|+..|.+++... |.. ...+.++|.++...|++++|+..+.++++.+|. +..++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ 172 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-----ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---RPESL 172 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---ChHHH
Confidence 34455667777788888888888887753 223 566777888888888888888888888888887 77778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+.+|.++...|++++|+..++++++..|.
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888888877553
No 48
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.85 E-value=4.5e-08 Score=93.74 Aligned_cols=107 Identities=20% Similarity=0.044 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433 419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH 498 (614)
Q Consensus 419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~ 498 (614)
+...+..+...|..+...|+|++|+..|.+++++.|+. .....++.++|.++.++|++++|+..+.+++.++|. +
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 105 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---Q 105 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---c
Confidence 34467789999999999999999999999999988753 123678999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCC
Q 047433 499 CKSLWRRSQAYDMKGL--------------GRESLMDCIMFINGCI 530 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~--------------yeEAL~df~kALkl~P 530 (614)
..++..+|.++..+|+ +++|++.++++++..|
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999988 5667777777777766
No 49
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.84 E-value=7.7e-09 Score=87.62 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y 515 (614)
.|+|+.|+..|.+.++..|.+ . ...++.++|.||+++|+|++|+..+++ ++.+|. +...++-.|+|+..+|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~--~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN--P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---NPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT--H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---HHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCCCC--h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---CHHHHHHHHHHHHHhCCH
Confidence 689999999999999999952 1 267888899999999999999999999 999999 889999999999999999
Q ss_pred HHHHHHHHHH
Q 047433 516 RESLMDCIMF 525 (614)
Q Consensus 516 eEAL~df~kA 525 (614)
++|+..|+++
T Consensus 75 ~eAi~~l~~~ 84 (84)
T PF12895_consen 75 EEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=1.3e-07 Score=93.79 Aligned_cols=112 Identities=17% Similarity=0.041 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+...|..++..|+|++|+..|.+++...|++ .....++.++|.+|+++|++++|+..++++++.+|+......+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45578999999999999999999999999999975 2223688999999999999999999999999999983222348
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCCh
Q 047433 502 LWRRSQAYDMK--------GLGRESLMDCIMFINGCIRSETT 535 (614)
Q Consensus 502 yyRRA~Al~~L--------G~yeEAL~df~kALkl~P~~~D~ 535 (614)
++.+|.++..+ |++++|+..|+++++..|++...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 99999999987 89999999999999999976543
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=2e-08 Score=94.31 Aligned_cols=115 Identities=9% Similarity=-0.102 Sum_probs=93.4
Q ss_pred HHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433 443 AMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522 (614)
Q Consensus 443 I~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df 522 (614)
...|+++|+++|+. +.++|.++..+|++++|+..|++++.++|. +..+|+.+|.++..+|++++|+..|
T Consensus 13 ~~~~~~al~~~p~~--------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET--------VYASGYASWQEGDYSRAVIDFSWLVMAQPW---SWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46789999999964 568999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 047433 523 IMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPV 571 (614)
Q Consensus 523 ~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~ 571 (614)
+++++++|++.+...+ +. .+....++.-++...|..++...+..+.
T Consensus 82 ~~Al~l~p~~~~a~~~--lg-~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 82 GHALMLDASHPEPVYQ--TG-VCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHhcCCCCcHHHHH--HH-HHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999975554322 22 2222345556667778888776655443
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=1.5e-07 Score=109.20 Aligned_cols=103 Identities=8% Similarity=-0.152 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433 419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH 498 (614)
Q Consensus 419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~ 498 (614)
.+..+......++.+++.+++++|+..+.+++..+|++ +.+++++|.++.++|+|++|+..|++++.-+|+ +
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~---~ 187 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-----AREILLEAKSWDEIGQSEQADACFERLSRQHPE---F 187 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---c
Confidence 34456667777777777777777777777777777777 777777777777777777777777777777777 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
.+++..+|.++..+|+.++|...|+++++..
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7777777777777777777777777777764
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.2e-09 Score=114.04 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC 499 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~ 499 (614)
...++..+.+||..++..+|.+|+..|+.||+++|++ +..|.|||.+++.+++|++|.-|+++.++++|. ..
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~---~~ 117 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-----ASYYSNRAATLMMLGRFEEALGDARQSVRLKDG---FS 117 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-----hhhhchhHHHHHHHHhHhhcccchhhheecCCC---cc
Confidence 3478899999999999999999999999999999999 999999999999999999999999988888887 44
Q ss_pred HHHHHHHHHHHHcC
Q 047433 500 KSLWRRSQAYDMKG 513 (614)
Q Consensus 500 KAyyRRA~Al~~LG 513 (614)
+++.|.++|+..++
T Consensus 118 k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 118 KGQLREGQCHLALS 131 (486)
T ss_pred ccccchhhhhhhhH
Confidence 44444444444433
No 54
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.79 E-value=1.2e-07 Score=90.11 Aligned_cols=99 Identities=16% Similarity=-0.044 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+...|..++..|+|++|+..|.+++.+.|+. ...+.++.|+|.+|..+|++++|+..+++|++++|. +..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~---~~~~ 108 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF---LPQA 108 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHH
Confidence 56688999999999999999999999999997752 233679999999999999999999999999999999 8899
Q ss_pred HHHHHHHHH-------HcCCHHHHHHHHHHH
Q 047433 502 LWRRSQAYD-------MKGLGRESLMDCIMF 525 (614)
Q Consensus 502 yyRRA~Al~-------~LG~yeEAL~df~kA 525 (614)
+..+|.++. .+|++++|+.++.++
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 999999988 788877555555544
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=1.4e-07 Score=95.35 Aligned_cols=143 Identities=17% Similarity=0.009 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+....+.|-.++..|++..|.....+||+.+|++ ..+|.-||..|.++|+.+.|-+.|++|+.++|+ +...
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-----~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdV 105 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-----YLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDV 105 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccch
Confidence 55678889999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-hHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET-TSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNV 574 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D-~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~ 574 (614)
+.+-|.-++.+|++++|...|++|+.. |.... ++....+..|.. ..++.-++...|.+++..++..++...
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 999999999999999999999999986 43332 222333442332 234445667788888888876665443
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.77 E-value=6e-08 Score=101.15 Aligned_cols=126 Identities=12% Similarity=-0.132 Sum_probs=98.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y 515 (614)
.+..+.+|..++++|...|.+ ++..+..|++||.+|..+|++++|+.+++++++++|+ +..+|+.+|.++..+|++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~-~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT-DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNF 114 (296)
T ss_pred chHHHHHHHHHHHHHccccCC-cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCH
Confidence 346788999999999765532 3456889999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433 516 RESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS 568 (614)
Q Consensus 516 eEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~ 568 (614)
++|+..|+++++++|++.....+..+. ....++..++...|..++...+.
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~---l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIA---LYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999755433222221 11223334455556666555443
No 57
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=6.1e-08 Score=102.94 Aligned_cols=163 Identities=9% Similarity=-0.002 Sum_probs=121.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433 433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM 511 (614)
Q Consensus 433 lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~ 511 (614)
+...+.+++|+..++++|+++|.+ ..+|.+|+.++.++| ++++|+..++++++.+|+ +..+|+.|+.++..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~-----ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l~~ 118 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN-----YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLAEK 118 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh-----HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHHHH
Confidence 345678999999999999999999 999999999999999 689999999999999999 99999999999999
Q ss_pred cCCH--HHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc-------
Q 047433 512 KGLG--RESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK------- 582 (614)
Q Consensus 512 LG~y--eEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~------- 582 (614)
+|+. ++++..+.++++.+|++...-.... ++...+++-.++...+.++++.++.+.....+.......
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~---w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQ---WVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 9984 7889999999999885443321211 222333333455566777777765554333222221111
Q ss_pred cchhhhHHHHHHHHHHhcccccCC
Q 047433 583 SGIEEQRYCDMIRTMMEKKNLISG 606 (614)
Q Consensus 583 ~g~~eQ~~dD~iral~~~~~~~~g 606 (614)
....+++++...++|..+|+..|-
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~Sa 219 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESP 219 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCH
Confidence 112356788888999999987653
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=1.3e-07 Score=109.78 Aligned_cols=133 Identities=8% Similarity=-0.077 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.++.+...|......|.+++|...+..+++++|++ ..++.|++.++.+++++++|+..+++++..+|+ +..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-----~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~ 156 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-----SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SARE 156 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHH
Confidence 46689999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK 565 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k 565 (614)
++.+|.++.++|+|++|+..|++++...|+.. +....+. ......++.-.+...|+.|+..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~--~~~~~~a-~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFE--NGYVGWA-QSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH--HHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999777533 3322222 2233334445555555555444
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=2e-07 Score=104.99 Aligned_cols=207 Identities=16% Similarity=0.119 Sum_probs=154.5
Q ss_pred HHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhc
Q 047433 303 KQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQK 382 (614)
Q Consensus 303 ~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~ 382 (614)
++.|+.-++== -...++|..+.|.+|-+++.+.+.+|+..-++++--++|-.+ +. ...+.|.
T Consensus 411 q~Li~~~~~sP-----esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGh-----E~---~~~ee~d----- 472 (638)
T KOG1126|consen 411 QDLIDTDPNSP-----ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGH-----ES---IATEEFD----- 472 (638)
T ss_pred HHHHhhCCCCc-----HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCC-----hh---hhhHHHH-----
Confidence 45555444422 234788888999999999999999998887777777766554 00 0111111
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhH
Q 047433 383 FKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERM 462 (614)
Q Consensus 383 p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a 462 (614)
.+...+ +..- .+.+. .-.+|.-.|-.+.++++|+.|.-.|.+|++++|.+ .
T Consensus 473 -------~a~~~f--------r~Al--~~~~r-------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-----s 523 (638)
T KOG1126|consen 473 -------KAMKSF--------RKAL--GVDPR-------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-----S 523 (638)
T ss_pred -------hHHHHH--------Hhhh--cCCch-------hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-----h
Confidence 111111 1111 34433 33489999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchH
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIP 542 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~ 542 (614)
++..-.+..+.++|+.++|+..+++|+.+||. ++-.-|.+|.++..+++|++|+..+++.-++.|+.. ..
T Consensus 524 vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es-------~v 593 (638)
T KOG1126|consen 524 VILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NPLCKYHRASILFSLGRYVEALQELEELKELVPQES-------SV 593 (638)
T ss_pred hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH-------HH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999432 23
Q ss_pred HHHHHHHHHHHHHH----HHHhhhhhcC
Q 047433 543 YYAARMISKHMNAL----WVFGGARSKI 566 (614)
Q Consensus 543 ~y~~r~i~Kqmea~----~lF~~Ai~k~ 566 (614)
++....+.+++... ..|.-|...+
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 45555566666543 3444444333
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.1e-07 Score=105.70 Aligned_cols=105 Identities=17% Similarity=0.096 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.++...-.|--++-.|+|+.||.+|+.||...|++ ..+|+.+|+.+-.-.+..+||+.|++||+|.|. ++.+
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd-----~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~---yVR~ 500 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND-----YLLWNRLGATLANGNRSEEAISAYNRALQLQPG---YVRV 500 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch-----HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC---eeee
Confidence 34466778999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
.|++|.++..+|.|+||++.|..||.+.+++..
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999887544
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-07 Score=103.48 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=109.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ 507 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~ 507 (614)
--||-+--.++++.|+..|.+|++++|.. ..+|.-.|.=|+.+++-..||..|++|++++|. ..+|||.+||
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~-----~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~---DyRAWYGLGQ 406 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKY-----LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR---DYRAWYGLGQ 406 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcch-----hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch---hHHHHhhhhH
Confidence 45788888899999999999999999999 999999999999999999999999999999999 9999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433 508 AYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI 566 (614)
Q Consensus 508 Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~ 566 (614)
+|..++.+.=|+-.|++|+++.|. |+..-..+..+- -.+.+..++.+.|.+|+.-.
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~kPn--DsRlw~aLG~CY-~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELKPN--DSRLWVALGECY-EKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCC--chHHHHHHHHHH-HHhccHHHHHHHHHHHHhcc
Confidence 999999999999999999999884 555444555444 23445567788898887654
No 62
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.68 E-value=1.5e-06 Score=101.85 Aligned_cols=170 Identities=11% Similarity=-0.098 Sum_probs=96.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------------C
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP------------N 496 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~------------~ 496 (614)
.|..++..|++++|+..|.++++..|.. .......+.+++.+++..|++++|+..+++++..+|.. +
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~-~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETI-ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCC-CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 4677788888888888888888776643 11113456666667777777777777777777776620 0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccC
Q 047433 497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQE 576 (614)
Q Consensus 497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e 576 (614)
....+++.+|.++...|++++|++.+++++...|++. .....+. .+....++..++...+++++...+..+......
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~--~l~~~lA-~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ--GLRIDYA-SVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 0245667777777777777777777777777777532 2122211 122222333445555666665554443333322
Q ss_pred CcCCcccchhhhHHHHHHHHHHhccc
Q 047433 577 SYGENKSGIEEQRYCDMIRTMMEKKN 602 (614)
Q Consensus 577 ~~~~~~~g~~eQ~~dD~iral~~~~~ 602 (614)
.......+.-+++...+.+.+...|+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 22233333344444444444444443
No 63
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=3.8e-07 Score=94.47 Aligned_cols=108 Identities=9% Similarity=-0.048 Sum_probs=97.4
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 424 GLIKQEAKHL-FWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 424 ~~lK~~GN~l-Fk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
......+..+ ++.|+|++|+..|.+.|+..|+. ...+.+++-+|.+|+..|+|++|+..+.++++..|+++....++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS--TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4567777776 67899999999999999999975 34457999999999999999999999999999999877789999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
+++|.++..+|++++|+..|+++++..|++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999999999999654
No 64
>PRK15331 chaperone protein SicA; Provisional
Probab=98.65 E-value=3.9e-07 Score=88.20 Aligned_cols=104 Identities=10% Similarity=-0.030 Sum_probs=98.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433 410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL 489 (614)
Q Consensus 410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL 489 (614)
.+|+++++ .....|-.+|..|++++|...|+-....+|.+ ...+..+|.|+..+++|++|+..|..|.
T Consensus 31 gis~~~le-------~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 31 GIPQDMMD-------GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-----PDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred CCCHHHHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777665 88999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
.++++ ++..+|+.|+||..+|+.+.|...|..+++.
T Consensus 99 ~l~~~---dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 99 TLLKN---DYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HcccC---CCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 99999 8899999999999999999999999999994
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=4.5e-07 Score=89.76 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=97.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH-HHcCC
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAY-DMKGL 514 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al-~~LG~ 514 (614)
.++.++++..|.++++.+|++ ...|.++|.+|..+|++++|+..+++|++++|+ +...+...|.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCC
Confidence 677899999999999999999 999999999999999999999999999999999 999999999986 67787
Q ss_pred --HHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433 515 --GRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS 568 (614)
Q Consensus 515 --yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~ 568 (614)
+++|...++++++.+|++.+.. ..+. ......+..-++...+.++....++
T Consensus 124 ~~~~~A~~~l~~al~~dP~~~~al--~~LA-~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 124 HMTPQTREMIDKALALDANEVTAL--MLLA-SDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred CCcHHHHHHHHHHHHhCCCChhHH--HHHH-HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5999999999999999654432 2222 1122233334455556666555433
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.63 E-value=1e-07 Score=76.53 Aligned_cols=64 Identities=14% Similarity=-0.019 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 466 SNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 466 sNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
+++|..+++.|+|++|+..++++++.+|. +..+++.+|.++..+|++++|+..|+++++..|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 36789999999999999999999999999 99999999999999999999999999999999853
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.62 E-value=3.6e-07 Score=82.63 Aligned_cols=83 Identities=8% Similarity=-0.084 Sum_probs=78.0
Q ss_pred HHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433 444 MKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCI 523 (614)
Q Consensus 444 ~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~ 523 (614)
+.|.+++..+|.+ .....++|.+++..|++++|+..+++++.++|. +..+++++|.++..+|++++|+..|+
T Consensus 4 ~~~~~~l~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQ-----LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---NSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhh-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999998 899999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q 047433 524 MFINGCIRSET 534 (614)
Q Consensus 524 kALkl~P~~~D 534 (614)
++++..|.+.+
T Consensus 76 ~~~~~~p~~~~ 86 (135)
T TIGR02552 76 LAAALDPDDPR 86 (135)
T ss_pred HHHhcCCCChH
Confidence 99999886443
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=5.7e-06 Score=82.03 Aligned_cols=108 Identities=9% Similarity=0.001 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHhcCCCC
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL--------REPDAAISDATRALCLSNPP 495 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL--------GdyeeAI~D~~~ALeLdP~~ 495 (614)
..+...|..++..|++++|+..|.++++..|++ .....++.++|.+++++ |++++|+..++++++.+|+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH--PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 467888999999999999999999999999976 22244789999999987 89999999999999999992
Q ss_pred CccHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 496 NSHCKSL--------------WRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 496 ~~~~KAy--------------yRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
....+++ +.+|..+...|++++|+..|+++++..|+++
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 2112222 4678889999999999999999999998654
No 69
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.61 E-value=1.6e-06 Score=88.64 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
+..+...|...+..|+|++|+..|++.+...|.. .....+..++|.+|+++++|++|+..+++.++++|+++-...++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4467789999999999999999999999999965 45556678999999999999999999999999999966667899
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHcCCCCCC-hHhhcchHHHHHHHHHHHH
Q 047433 503 WRRSQAYDMKGL------------------GRESLMDCIMFINGCIRSET-TSKRVKIPYYAARMISKHM 553 (614)
Q Consensus 503 yRRA~Al~~LG~------------------yeEAL~df~kALkl~P~~~D-~~~k~kl~~y~~r~i~Kqm 553 (614)
|.+|.++..++. ..+|+..|+++++..|++.- ++++..+.....++-.+.+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999866651 36789999999999998765 4444445544444444443
No 70
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.60 E-value=1.6e-06 Score=85.79 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+...|..++..|+|.+|+..|++.+...|. ++....+...+|.++++.|+|.+|+..+++-++..|+++.-..+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 4568899999999999999999999999999996 36667889999999999999999999999999999996666789
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCCh-HhhcchHHHHHHHHHHHH
Q 047433 502 LWRRSQAYDMKG-----------LGRESLMDCIMFINGCIRSETT-SKRVKIPYYAARMISKHM 553 (614)
Q Consensus 502 yyRRA~Al~~LG-----------~yeEAL~df~kALkl~P~~~D~-~~k~kl~~y~~r~i~Kqm 553 (614)
+|.+|.+++.+. ...+|+..|+.+++..|++.-. +++..+.....++-.+.+
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987764 3458999999999999987753 334445544444444433
No 71
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.56 E-value=1.5e-06 Score=82.33 Aligned_cols=110 Identities=17% Similarity=0.076 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
+..+...|...++.|+|.+|+..++.....-|. .+....+...++-+|++.++|++|+..+++-|+|+|+++--.-++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~--g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF--GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 447889999999999999999999999998885 355578899999999999999999999999999999954445699
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCCCC
Q 047433 503 WRRSQAYDMKGL---------------GRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 503 yRRA~Al~~LG~---------------yeEAL~df~kALkl~P~~~D 534 (614)
|++|.+++.+.. ..+|+.+|+++++..|++.-
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 999999999988 99999999999999997654
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.54 E-value=4.8e-06 Score=97.77 Aligned_cols=102 Identities=12% Similarity=-0.088 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
......|..+...|++++|+..+++++...|.+ ..++.++|.++...|++++|+..++++++++|+ +..+++
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd---~~~l~~ 431 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-----QGLRIDYASVLQARGWPRAAENELKKAEVLEPR---NINLEV 431 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---ChHHHH
Confidence 355678899999999999999999999999999 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
.+|.++..+|++++|...++++++..|++.
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999644
No 73
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.53 E-value=2.7e-07 Score=74.08 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.+|..+++.|+|++|+..|+++++..|.+ ..++..+|.++..+|++++|+..++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN-----PEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999999 999999999999999999999999999999998
No 74
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-06 Score=95.94 Aligned_cols=108 Identities=11% Similarity=-0.005 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 415 KVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 415 el~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.++.++.....|...|-++...++-..||+.|++||++||.+ -.+|+.+|++|--++-..=|+-.+++|+++.|+
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn 430 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-----YRAWYGLGQAYEIMKMHFYALYYFQKALELKPN 430 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh-----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 344456678899999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 495 PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 495 ~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
....|.-+|.||.++++.+||+++|.+++....
T Consensus 431 ---DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 431 ---DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred ---chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 889999999999999999999999999999853
No 75
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=3e-07 Score=101.32 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhcCCCCC
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL---REPDAAISDATRALCLSNPPN 496 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL---GdyeeAI~D~~~ALeLdP~~~ 496 (614)
++.++.++++||..|..+....||..|++++...|.. ..+|.|||.++++. |+...|+.||..|+++||.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~-----~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-- 443 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA-----IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-- 443 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch-----hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH--
Confidence 4466789999999999999999999999999999998 99999999999995 6888999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
+.||+|+++.++.+++++.+|+.+...+....|
T Consensus 444 -~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 444 -IQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred -HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999999999988877777777
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.47 E-value=4.8e-07 Score=92.59 Aligned_cols=102 Identities=18% Similarity=-0.005 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+...|+.+.+.|++++|+..|.++++++|++ ..+..+.+..++..|+++++...++...+..|+ +...
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-----~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~---~~~~ 216 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-----PDARNALAWLLIDMGDYDEAREALKRLLKAAPD---DPDL 216 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT---SCCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC---HHHH
Confidence 55678899999999999999999999999999999 999999999999999999988888777777777 6667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+...|.++..+|++++|+..|+++++..|+
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcccccccccccccccccccccc
Confidence 788899999999999999999999999884
No 77
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.44 E-value=1.1e-06 Score=71.66 Aligned_cols=58 Identities=31% Similarity=0.342 Sum_probs=32.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.++..++|++|+..+++++.++|.+ +.++.++|.++.++|+|.+|+.+++++++++|+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD-----PELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc-----chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4455555555555555555555555 555555555555555555555555555555555
No 78
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.40 E-value=5.6e-07 Score=92.07 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVC--PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK 500 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~--P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K 500 (614)
...+......++..++++++...+.++.... |.+ +.+|.-+|.++.+.|++++|+.++++|++++|+ +..
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---~~~ 181 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-----ARFWLALAEIYEQLGDPDKALRDYRKALELDPD---DPD 181 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----HH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHH
Confidence 3445556667889999999999999987655 555 889999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGE 580 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~ 580 (614)
+...++.++...|+++++...+....+..|+++. ....+. .+...+++.-++...|.++....+..|.+...-....
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~--~~~~la-~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD--LWDALA-AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--HCHHHH-HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--HHHHHH-HHhcccccccccccccccccccccccccccccccccc
Confidence 9999999999999999988888888877664333 222222 2333345555667788888777766666555555555
Q ss_pred cccchhhhHHHHHHHHH
Q 047433 581 NKSGIEEQRYCDMIRTM 597 (614)
Q Consensus 581 ~~~g~~eQ~~dD~iral 597 (614)
...|..+++.+-..+++
T Consensus 259 ~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 259 EQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T----------------
T ss_pred ccccccccccccccccc
Confidence 56666666655544443
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.39 E-value=3.5e-06 Score=86.49 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
..+..+|..+|..|+|.+|+..+.++..+.|++ ..+|+-+|.+|.++|++++|-..|.+|+++.|+ ....+-
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d-----~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~~n 172 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD-----WEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPSIAN 172 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC-----hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---Cchhhh
Confidence 356669999999999999999999999999999 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
++|..|+-.|+++.|...+..+....+
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988865
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=4.4e-06 Score=93.17 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS 506 (614)
Q Consensus 427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA 506 (614)
..+|..+++.|+..+|+-.|..|+..+|.+ +.+|.-+|.++...++-..||..+.++++|||+ |.+++..+|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h-----aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLmaLA 360 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH-----AEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMALA 360 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH-----HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHHHH
Confidence 467999999999999999999999999999 999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 507 QAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 507 ~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
..|...|.-.+|+..+.+-+...|.
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999887764
No 81
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.36 E-value=9.6e-07 Score=72.09 Aligned_cols=63 Identities=19% Similarity=0.065 Sum_probs=59.0
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 469 AQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 469 A~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
..+|+..++|++|+..+++++.++|+ ++.+++.+|.++..+|++++|+.+|+++++..|++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 46789999999999999999999999 9999999999999999999999999999999995443
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.36 E-value=3.3e-06 Score=85.57 Aligned_cols=144 Identities=12% Similarity=-0.055 Sum_probs=112.7
Q ss_pred cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433 458 KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537 (614)
Q Consensus 458 ~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~ 537 (614)
....+.++.-+|.-|+..|++..|....++||+.||+ +..+|.-+|..|..+|+.+.|-+.|++|+++.|++.|-
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV-- 105 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV-- 105 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--
Confidence 3567789999999999999999999999999999999 99999999999999999999999999999999976653
Q ss_pred hcchHHHHHHHHHHHHHHHHHHhhhhhcC--CCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcccccCCc
Q 047433 538 RVKIPYYAARMISKHMNALWVFGGARSKI--LSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISGK 607 (614)
Q Consensus 538 k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~--~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~~~g~ 607 (614)
.+.+.-+ ..-.++-.++...|+.|+... ..++....+.+...-+.|...++-+++.|++..+|++.+-.
T Consensus 106 LNNYG~F-LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~ 176 (250)
T COG3063 106 LNNYGAF-LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL 176 (250)
T ss_pred hhhhhHH-HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence 3333211 112234466777888887653 22223333444455677888999999999999999987643
No 83
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.36 E-value=1.3e-06 Score=95.90 Aligned_cols=72 Identities=24% Similarity=0.190 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHH---HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMV---LYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~---lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
..+..+..+.+.|+.+++.|+|++|+..|++||+++|++ .. +|+|+|.||.++|++++|+.++.+|+++.+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-----aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~ 144 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-----DEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL 144 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence 456689999999999999999999999999999999998 64 5999999999999999999999999998543
No 84
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.33 E-value=1.7e-06 Score=69.58 Aligned_cols=66 Identities=23% Similarity=0.069 Sum_probs=53.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433 433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS 506 (614)
Q Consensus 433 lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA 506 (614)
+++.|+|++|+..|++++..+|++ ..++.++|.||++.|++++|...+.+++..+|+ +...+.-++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-----PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD---NPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-----HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT---HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---HHHHHHHHh
Confidence 467888899999999999998988 888888999999999999999999999888888 655554444
No 85
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=5.9e-06 Score=83.35 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=102.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433 410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL 489 (614)
Q Consensus 410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL 489 (614)
.|++++ .|.-+.++|+-+-..|-+.-|--.+++++.+.|.. +..++-+|.-+...|+|+.|...++.++
T Consensus 58 ~l~~ee------RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m-----~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 58 ALTDEE------RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred cCChHH------HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc-----HHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 666665 45678999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
++||. +--++.+||.+++--|+|.-|..|+.++..-+|++
T Consensus 127 ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 127 ELDPT---YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred ccCCc---chHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence 99999 99999999999999999999999999999998853
No 86
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.7e-06 Score=90.41 Aligned_cols=105 Identities=16% Similarity=0.133 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc
Q 047433 460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV 539 (614)
Q Consensus 460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~ 539 (614)
.+++-+-+-|.=+++-++|++|+..|++||+++|. ++--|-+||.||..||+|+.|++|+++++.++|.+.....+.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 45666777888899999999999999999999999 999999999999999999999999999999998655544444
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433 540 KIPYYAARMISKHMNALWVFGGARSKILSSP 570 (614)
Q Consensus 540 kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~ 570 (614)
.+.++. +++..++...|++|+..++..+
T Consensus 156 G~A~~~---~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 156 GLAYLA---LGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHc---cCcHHHHHHHHHhhhccCCCcH
Confidence 554333 3444455555777776655443
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.29 E-value=3.5e-05 Score=90.22 Aligned_cols=234 Identities=13% Similarity=0.062 Sum_probs=154.0
Q ss_pred hhHHHhhhhhhccccchhhhhcchHHHhHhhhhhcccCCCCCCcchhHHHHhhhcccch--hhHHHHHHHHHhhcccccC
Q 047433 238 CWSLYLLNCFACKERSLDLICNKQEFLMDLCNMWGGLVNHNSPAGVGLIRILCYSKTGR--KNIAECKQVIENLCNLSRS 315 (614)
Q Consensus 238 c~s~~~~~~~a~~~~~~~~~~~~~~~l~~l~~~wg~l~~~~~~~~~~~~~~~~~~~~~~--~aia~~~~~i~~lc~~srs 315 (614)
|=.|..=-||+|--.=-..+| +=|.+-| ..|+.+|+++++.+-+|--++|+ .|+.+..-+++..|.-+
T Consensus 164 il~LlGkA~i~ynkkdY~~al--~yyk~al------~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v-- 233 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGAL--KYYKKAL------RINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV-- 233 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHH--HHHHHHH------hcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH--
Confidence 334444567777632222333 2222211 46999999999999999999998 57777787887777444
Q ss_pred CCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHH-
Q 047433 316 SDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEE- 394 (614)
Q Consensus 316 sd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~e- 394 (614)
-.+-+++-+-+.-.|.+.-.+ + +..+. ..|.. ++.|+.+...|+.
T Consensus 234 ---~alv~L~~~~l~~~d~~s~~~----~---~~ll~---------------------~ay~~---n~~nP~~l~~LAn~ 279 (1018)
T KOG2002|consen 234 ---SALVALGEVDLNFNDSDSYKK----G---VQLLQ---------------------RAYKE---NNENPVALNHLANH 279 (1018)
T ss_pred ---HHHHHHHHHHHHccchHHHHH----H---HHHHH---------------------HHHhh---cCCCcHHHHHHHHH
Confidence 233333333333333322111 1 11111 12211 3334444333332
Q ss_pred ---------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHH
Q 047433 395 ---------IWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLY 465 (614)
Q Consensus 395 ---------l~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~ly 465 (614)
+|.+- +... ..+ ......++.+...|..+...|+|++|-.+|.+++..+|++ -...+
T Consensus 280 fyfK~dy~~v~~la----~~ai--~~t----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~----~~l~~ 345 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLA----EHAI--KNT----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN----FVLPL 345 (1018)
T ss_pred HhhcccHHHHHHHH----HHHH--Hhh----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC----ccccc
Confidence 22222 0000 001 1123367789999999999999999999999999999876 24567
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCC
Q 047433 466 SNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG----LGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 466 sNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG----~yeEAL~df~kALkl~P~~ 532 (614)
..+|+.|++.|+++.|+..+.++++..|+ +.+...-+|..|...+ .-+.|.....++++..|.+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~---~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN---NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc---hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 88999999999999999999999999999 9999999999999887 6788888999999988753
No 88
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.3e-06 Score=84.93 Aligned_cols=106 Identities=15% Similarity=0.025 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCC
Q 047433 418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR---EPDAAISDATRALCLSNP 494 (614)
Q Consensus 418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG---dyeeAI~D~~~ALeLdP~ 494 (614)
.++..++.|.-.|..++..|++..|...|++|+++.|++ +..+.-.|.+++... .-.++..-+++|+++||+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-----~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~ 225 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-----PEILLGLAEALYYQAGQQMTAKARALLRQALALDPA 225 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc
Confidence 455678899999999999999999999999999999999 999999999988764 467899999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 495 PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 495 ~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
++.+.+-+|..+++.|+|.+|+..+++.+...|-
T Consensus 226 ---~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 226 ---NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred ---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999884
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.23 E-value=5.9e-06 Score=88.86 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+..+|..++..|+|++|+..++++|.++|.+ +.+|.++|.+|+.+|+|++|+..++++++++|+ +..+
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~---~~~~ 106 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSL-----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPG---DSRF 106 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHH
Confidence 45578999999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcC
Q 047433 502 LWRRSQAYDMKG 513 (614)
Q Consensus 502 yyRRA~Al~~LG 513 (614)
...++.+...+.
T Consensus 107 ~~~l~~~~~kl~ 118 (356)
T PLN03088 107 TKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHHH
Confidence 888888877663
No 90
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=1.3e-05 Score=74.78 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
.......|..++..|+|++|+..|.+++...|+ ......+..++|.+++..|+|++|+..++. +.-.+- ...++
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~---~~~~~ 121 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPD--PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAF---KALAA 121 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcch---HHHHH
Confidence 446777899999999999999999999998764 355678899999999999999999999866 222233 67788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFI 526 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kAL 526 (614)
..+|.+|...|++++|+..|++++
T Consensus 122 ~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 122 ELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhC
Confidence 899999999999999999999875
No 91
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.22 E-value=7.2e-06 Score=90.18 Aligned_cols=69 Identities=9% Similarity=-0.037 Sum_probs=66.0
Q ss_pred hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 452 VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS---LWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 452 l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA---yyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
.+|++ +.+++|+|.+|+++|+|++|+..|++||+++|+ +..+ ||++|.+|..+|++++|+.+|++++++
T Consensus 70 ~dP~~-----a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKT-----AEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888 999999999999999999999999999999999 8854 999999999999999999999999997
No 92
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.18 E-value=3.2e-05 Score=71.42 Aligned_cols=102 Identities=21% Similarity=-0.013 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.+.+.|..+-..|+.++||..|.++++.... ...+..++.++|.++..+|++++|+.-+++++.-.|++..+.....-
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLS--GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 5677888999999999999999999997654 34567899999999999999999999999999988876666677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 505 RSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 505 RA~Al~~LG~yeEAL~df~kALkl 528 (614)
.+.++..+|+++||+..+..++.-
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999999888764
No 93
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=2.6e-05 Score=80.75 Aligned_cols=109 Identities=12% Similarity=0.032 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
..+.+.+-.+++.|+|.+|...|..-|+.-|+. ...+.+++=++.+++.+|+|++|...|..+++-.|+.+.-+++++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 448999999999999999999999999999974 455778888999999999999999999999999999777789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
.+|.+...+|+.++|...|+++++..|+.+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999996554
No 94
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.16 E-value=1.2e-05 Score=76.52 Aligned_cols=103 Identities=12% Similarity=0.001 Sum_probs=85.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA 508 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A 508 (614)
+.|.+|-.++|..+-..+...++..+. ...+.++.+.|.++..+|+|++|+..+++++.+.|+......+|+++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSG---EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI 81 (168)
T ss_pred cccccccccccccchhhhhHhccCCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 457778888888888888666654443 34678899999999999999999999999999977622234589999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 509 YDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 509 l~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
+..+|++++|+..|++++++.|...+
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 99999999999999999999885543
No 95
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=2.5e-05 Score=68.02 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
...+++.|..+++.|++++|+..+.+++..+|+......+++.+|.++...|++++|+..|+.++...|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 356889999999999999999999999999998333368999999999999999999999999999998654
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.14 E-value=2e-05 Score=90.40 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHH--HHHHHHhcCCCCCcc
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS--DATRALCLSNPPNSH 498 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~--D~~~ALeLdP~~~~~ 498 (614)
..+..+...|..+-.+|++++|.+.|..|+.++|+. +....-+|.++++.|+..-|.. -...|+++||. +
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h-----v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~---n 753 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH-----VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL---N 753 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC---C
Confidence 356678999999999999999999999999999999 9999999999999999888888 99999999999 9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
.++||.+|.++..+|+.++|..+|+.|+++.+.+
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999997743
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.13 E-value=2.9e-05 Score=81.21 Aligned_cols=102 Identities=15% Similarity=-0.024 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSL 502 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAy 502 (614)
..+...|..+...|++++|+..+.+++++.|++ ..++.++|.++...|++++|+..+.+++.+.|.. ......|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 355678889999999999999999999999999 8999999999999999999999999999998752 1234568
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
+.+|.++..+|++++|+..|++++...|
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 8999999999999999999999987765
No 98
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.13 E-value=8.1e-05 Score=87.28 Aligned_cols=109 Identities=13% Similarity=0.017 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc-
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH- 498 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~- 498 (614)
...+..+...+|.+|-.|+|+.+...+..+|...-. ....+..|++.|.+|..+|+|++|...|-++++.+|+ +
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~--~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d---~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN--KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND---NF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC---Cc
Confidence 345667889999999999999999999999987642 3455778999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
.-+++.+|+.|...|++++|...|+++++..|+..
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 88999999999999999999999999999999643
No 99
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=4.6e-05 Score=60.24 Aligned_cols=67 Identities=19% Similarity=0.102 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 464 LYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
++.++|.++...|++++|+..++++++..|. +..+++.+|.++...|++++|+..|+++++..|...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 5789999999999999999999999999999 889999999999999999999999999999988543
No 100
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.12 E-value=5.6e-06 Score=68.64 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC---CCCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLS---NPPNS-HCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd---P~~~~-~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
..+.++.|+|.+|..+|+|++|+..+++|+++. ++.++ ...+++++|.++..+|++++|+..+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 347788888888888888888888888888652 21111 3678888888888888888888888888876
No 101
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.6e-05 Score=88.77 Aligned_cols=109 Identities=16% Similarity=0.004 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcc--hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKN--ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS 497 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~--~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~ 497 (614)
+..+-.+.+.|-.+|..+.|.+|+..+..++..-+....+ .-...++|+|.++.++++|++||..+++||.+.|.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k--- 487 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK--- 487 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC---
Confidence 3344568888999999999999999999999554432211 23567999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 498 HCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
++..|--.|.+|..+|+++.|+..|.++|-+.|+
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999985
No 102
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.11 E-value=5.3e-05 Score=72.60 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=68.8
Q ss_pred hhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 451 GVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 451 el~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
.+.|.+.+...+.++.++|..+...|++++|+..++++++++|+.+....+++.+|.++..+|++++|+..|+++++..|
T Consensus 24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 33333334455889999999999999999999999999999876322357999999999999999999999999999988
Q ss_pred CC
Q 047433 531 RS 532 (614)
Q Consensus 531 ~~ 532 (614)
+.
T Consensus 104 ~~ 105 (172)
T PRK02603 104 KQ 105 (172)
T ss_pred cc
Confidence 54
No 103
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.10 E-value=4.3e-05 Score=90.62 Aligned_cols=103 Identities=11% Similarity=-0.071 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+.....++-..++.|+|.+|+..|.++++.+|.+ +....-.+..+...|++++|+..+++++.-+|. +..+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~-----~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~---~~~~ 104 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ-----SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNI---SSRG 104 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc-----hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCC---CHHH
Confidence 34467788888888999999999999999988887 433336777777888888888888888822233 4444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
+.-.|.++..+|++++|+..|+++++.+|++
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4444778888888888888888888888864
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.10 E-value=7e-05 Score=78.31 Aligned_cols=67 Identities=18% Similarity=0.020 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
...+.++|.++...|++++|+..++++++++|+ +..++..+|.+++..|++++|+..+++++...|.
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 456678899999999999999999999999999 8999999999999999999999999999999875
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.04 E-value=0.0011 Score=75.01 Aligned_cols=228 Identities=17% Similarity=0.049 Sum_probs=144.9
Q ss_pred HHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhcc-----ChhHHHHHHHHHHHHhhchhhhhhcc
Q 047433 286 IRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLK-----DPDTRYKVIETAALFLIDLVELNSLL 358 (614)
Q Consensus 286 ~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llk-----d~~try~v~dka~~aLvDLseL~~Lg 358 (614)
.|-=|+.++|| +|...|+..|+.+|+=. -.|.++-+.+.+.. +...+...++......|.....+.+-
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~-----~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~ 117 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRNPDNY-----DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP 117 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhh
Confidence 45568899999 78899999998887544 45566666663333 45667788888777777655554443
Q ss_pred CCCcCcHHHHHHHHHHhhhhhhh--cc----------CcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH-HHHHHH--HH
Q 047433 359 DRPKNLGEAITRALLLDYKLTEQ--KF----------KNKKVQKALEEIWELKVERRKREKMMMMSEEK-VEEMRV--LV 423 (614)
Q Consensus 359 ~~~k~lGe~it~aLl~dy~~~~~--~p----------~n~e~~~aL~el~~lkvEr~erEk~~~ls~ee-l~~~~~--~A 423 (614)
=. ...|+.|...+......... .| .+..-...+..+..-.+...+... .++..+ ...... ..
T Consensus 118 L~-~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~--~~~~~~~~~~~~p~~~l 194 (517)
T PF12569_consen 118 LD-FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG--SFSNGDDEEKEPPSTLL 194 (517)
T ss_pred cc-cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC--CCCCccccccCCchHHH
Confidence 33 33467775444322211111 11 111111222222221111111111 111110 000011 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
-.+.-.+..+-..|++++|++..++||+..|+. +.+|.-+|.+|-+.|++.+|....+.|-.+|+. .--.--
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-----~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~---DRyiNs 266 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-----VELYMTKARILKHAGDLKEAAEAMDEARELDLA---DRYINS 266 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh---hHHHHH
Confidence 345666777878999999999999999999998 999999999999999999999999999999988 555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
..+..+...|+.++|.+.+..+.+..
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 66778888899999999888886664
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.00 E-value=0.00011 Score=85.49 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+..++|.+|-.|++++|.....++|..+|.. ..+|.-+|.+|-.+|+.++|+.....|--|+|+ +..-
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-----~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~ 209 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN-----PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYEL 209 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-----hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHH
Confidence 35678889999999999999999999999999998 888888888888777766666666666666666 5556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
|.+.+.....+|++++|.-+|.+|++..|
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p 238 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANP 238 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 66666666666666666666666666655
No 107
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.99 E-value=9.5e-05 Score=83.59 Aligned_cols=108 Identities=19% Similarity=0.102 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCC---------------------------------------cc
Q 047433 422 LVGLIKQEAKHLFWLGE---IEEAAMKYTEALGVCPSRP---------------------------------------KN 459 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~Gd---yeeAI~~YtkAIel~P~~~---------------------------------------~~ 459 (614)
.|-.+..+|..++..++ +..|+.+|++||+++|++. ..
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 34456666666665544 6677777777777777750 00
Q ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
..+.+|.-+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.++|..+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 00233444455555566666666666666666665 35666666666666666666666666666666433
No 108
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=3.9e-05 Score=81.34 Aligned_cols=139 Identities=15% Similarity=0.086 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.+---|..+|-.++.+-|+..|.+.|.+--.+ +++|.|.|.|.+--++|+-++..+.+|+..-.+..-..+.||+
T Consensus 326 aiAcia~~yfY~~~PE~AlryYRRiLqmG~~s-----peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 326 AIACIAVGYFYDNNPEMALRYYRRILQMGAQS-----PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred eeeeeeeccccCCChHHHHHHHHHHHHhcCCC-----hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 34445677899999999999999999998888 9999999999999999999999999999876532236789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 047433 505 RSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPV 571 (614)
Q Consensus 505 RA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~ 571 (614)
+|.+....|++.-|..+|+-++..+|++..+- ..+. ..+...++-.++.-++..|-++.+....
T Consensus 401 lg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal--nNLa-vL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 401 LGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL--NNLA-VLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred cceeEEeccchHHHHHHHHHHhccCcchHHHH--HhHH-HHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 99999999999999999999999988655443 2332 2223344445666666666555544333
No 109
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.97 E-value=2.8e-05 Score=64.43 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR--PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS 492 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~--~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd 492 (614)
..+..+...|..++..|+|++|+..|.+++++.... .....+.++.|+|.||..+|++++|+..+++|+++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356789999999999999999999999999873111 234568999999999999999999999999999863
No 110
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.95 E-value=0.00015 Score=81.63 Aligned_cols=146 Identities=14% Similarity=0.005 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC--
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS---RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP-- 494 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~---~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~-- 494 (614)
+..+..++..|+.+...++|.+|+..|.+|+.+--. ...+-.+..+.|+|..|.+.|+|.+|...|++|++|-..
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~ 317 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL 317 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 345666778999999999999999999999987432 124556899999999999999999999999999987422
Q ss_pred ---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCC---hHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433 495 ---PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI---RSET---TSKRVKIPYYAARMISKHMNALWVFGGARSK 565 (614)
Q Consensus 495 ---~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P---~~~D---~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k 565 (614)
.+.-...+-..+.++..++++++|+..+++++++.- +..+ +..+..+. ......++..++...|++|+++
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~-~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA-ELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH-HHHHHhcchhHHHHHHHHHHHH
Confidence 011346777889999999999999999999998743 2222 11122233 3444567778888999999987
Q ss_pred C
Q 047433 566 I 566 (614)
Q Consensus 566 ~ 566 (614)
.
T Consensus 397 ~ 397 (508)
T KOG1840|consen 397 L 397 (508)
T ss_pred H
Confidence 5
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.95 E-value=0.00011 Score=84.22 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
....|...|-.+.+.++++.|+..|+.++.++|++ .++|+|.+.+|+++++-.+|....++|++-+.. +.+.
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-----~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~i 589 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-----AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQI 589 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-----hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCee
Confidence 34579999999999999999999999999999999 999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~ 537 (614)
|-+--.+....|++++|+..|.+.+.+..++.|+.+
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 999999999999999999999999998776666554
No 112
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=3.4e-05 Score=75.84 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE----------PDAAISDATRALCLSNPPNSHCKSLWRRSQA 508 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd----------yeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A 508 (614)
|+.|.+.|......+|.+ +..++|-|.+++.+.+ +++||+-++.||.|+|+ ...|+|.+|.|
T Consensus 7 FE~ark~aea~y~~nP~D-----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~---~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD-----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN---KHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh-----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHH
Confidence 788999999999999999 9999999999998743 67899999999999999 99999999999
Q ss_pred HHHcCC-----------HHHHHHHHHHHHHcCCC
Q 047433 509 YDMKGL-----------GRESLMDCIMFINGCIR 531 (614)
Q Consensus 509 l~~LG~-----------yeEAL~df~kALkl~P~ 531 (614)
|..++. |++|...|++|...+|+
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 998764 88999999999999985
No 113
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.94 E-value=0.00058 Score=74.32 Aligned_cols=208 Identities=13% Similarity=-0.011 Sum_probs=103.1
Q ss_pred CCCCcchhHHHHhhhcccch--hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhh
Q 047433 277 HNSPAGVGLIRILCYSKTGR--KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVEL 354 (614)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL 354 (614)
++..-++++..+--+...|. .|.+.+..+++..|+-. +....+..+....+|++....++.+.....+.-.+-
T Consensus 149 ~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~-----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 149 DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP-----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 33333455554444445555 78888888888888776 777777777777788887777666555443321110
Q ss_pred -hhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 047433 355 -NSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHL 433 (614)
Q Consensus 355 -~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~l 433 (614)
.++. +..+.. +...-. ... ..+.+...|.. ++... +..+......+..+
T Consensus 224 ~~~l~------~~a~~~-l~~~~~---~~~----~~~~l~~~w~~------------lp~~~----~~~~~~~~~~A~~l 273 (398)
T PRK10747 224 RAMLE------QQAWIG-LMDQAM---ADQ----GSEGLKRWWKN------------QSRKT----RHQVALQVAMAEHL 273 (398)
T ss_pred HHHHH------HHHHHH-HHHHHH---Hhc----CHHHHHHHHHh------------CCHHH----hCCHHHHHHHHHHH
Confidence 0000 000000 000000 000 01112222211 11110 11333444555556
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC
Q 047433 434 FWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG 513 (614)
Q Consensus 434 Fk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG 513 (614)
...|+.++|.....++++. |.+ ..+..-.+. +..+++++++..+++.++.+|+ ++..++-.|.++...|
T Consensus 274 ~~~g~~~~A~~~L~~~l~~-~~~-----~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~---~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR-QYD-----ERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGD---TPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc-CCC-----HHHHHHHhh--ccCCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHCC
Confidence 6666666666666666663 322 222211111 2335666666666666666666 5666666666666666
Q ss_pred CHHHHHHHHHHHHHcCC
Q 047433 514 LGRESLMDCIMFINGCI 530 (614)
Q Consensus 514 ~yeEAL~df~kALkl~P 530 (614)
++++|...|+++++..|
T Consensus 343 ~~~~A~~~le~al~~~P 359 (398)
T PRK10747 343 EWQEASLAFRAALKQRP 359 (398)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 66666666666666655
No 114
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.3e-05 Score=85.47 Aligned_cols=107 Identities=22% Similarity=0.140 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC-----------CcchhHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCP---SR-----------PKNERMVLYSNRAQCHLLLREPDAAISDATR 487 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P---~~-----------~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ 487 (614)
.++..++.||..|+.++|..|...|.+++..-. .. ....+...+.|.+.|-++++.+..|+-.+..
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 555788999999999999999999999987532 11 1245667889999999999999999999999
Q ss_pred HHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 488 ALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 488 ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+++.++. .+++|||+++++..+.++++|++++..+....|.
T Consensus 301 ~~~~~~s---~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 301 ALRDERS---KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ccccChh---hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 9999999 9999999999999999999999999999999884
No 115
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.0021 Score=68.39 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHH-HHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchh
Q 047433 389 QKALEEIWELKVERRKREKMMMMSEEK-VEE------MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNER 461 (614)
Q Consensus 389 ~~aL~el~~lkvEr~erEk~~~ls~ee-l~~------~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~ 461 (614)
..++..+..+.....+|+| ++...+ +.+ +.+.|.-+-+.+..+....+++.|+....+|++.+|+.
T Consensus 141 ~~AlqqLl~IYQ~treW~K--AId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c----- 213 (389)
T COG2956 141 EGALQQLLNIYQATREWEK--AIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC----- 213 (389)
T ss_pred HHHHHHHHHHHHHhhHHHH--HHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc-----
Confidence 4455556665555667887 444433 211 46678889999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC-KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~-KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+.+-.-+|.+++..|+|++|+..+..+++-||. +. ...-.+..||..+|+.++.+..+.++.+..++
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~---yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPE---YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 778888999999999999999999999999998 54 67778899999999999999999999999874
No 116
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00025 Score=77.03 Aligned_cols=100 Identities=19% Similarity=0.044 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
...+.+.+-.+.+.++|.+|+..-+++|+++|++ ..+++.||.|++.+|+|+.|+.|+.+|++++|. |-.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~---Nka~~ 328 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN-----VKALYRRGQALLALGEYDLARDDFQKALKLEPS---NKAAR 328 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC---cHHHH
Confidence 3456778888899999999999999999999999 999999999999999999999999999999999 87777
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHcCC
Q 047433 503 WRRSQAYDMKGLGRES-LMDCIMFINGCI 530 (614)
Q Consensus 503 yRRA~Al~~LG~yeEA-L~df~kALkl~P 530 (614)
..+..+.....++.+. .+.|...+...+
T Consensus 329 ~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 329 AELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777777666666655 556777666644
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.00051 Score=64.08 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..........+..++...+...+++.++-.|.. .....+...+|.+++..|++++|+..++.++.-.|+......+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 55667777888888999999999999999988864 3446778889999999999999999999999988764445679
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIM 524 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~k 524 (614)
.+|+|.++..+|++++|+..++.
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999866
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.89 E-value=0.0029 Score=71.46 Aligned_cols=229 Identities=18% Similarity=0.108 Sum_probs=142.6
Q ss_pred CCCCCcchhHHHHhhh--cccch--hhHHHHHHHHHhhcccccCCCcchhhh-------hhHHHHhccChhHHHHHHHHH
Q 047433 276 NHNSPAGVGLIRILCY--SKTGR--KNIAECKQVIENLCNLSRSSDDWQYMG-------IDCLLFLLKDPDTRYKVIETA 344 (614)
Q Consensus 276 ~~~~~~~~~~~~~~~~--~~~~~--~aia~~~~~i~~lc~~srssd~w~y~~-------idcll~Llkd~~try~v~dka 344 (614)
+..+|.=++.++.|-. ...|| +|+--|+.+|+.+|+..= ..+.. ++-++.-++....+.-.|.+|
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G----~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG----LKHLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC----ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456666565655543 34455 699999999999877663 11221 222223333333333334443
Q ss_pred HHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 047433 345 ALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVG 424 (614)
Q Consensus 345 ~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~ 424 (614)
..... + ..|+.-..++..+..--...++. -...++..-..+..++. ++.. ..+. .+.+.
T Consensus 268 L~i~e---~--~~G~~h~~va~~l~nLa~ly~~~----GKf~EA~~~~e~Al~I~----~~~~--~~~~------~~v~~ 326 (508)
T KOG1840|consen 268 LTIRE---E--VFGEDHPAVAATLNNLAVLYYKQ----GKFAEAEEYCERALEIY----EKLL--GASH------PEVAA 326 (508)
T ss_pred HHHHH---H--hcCCCCHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHH----HHhh--ccCh------HHHHH
Confidence 33322 1 22444122222222211111221 12333444444444444 1111 2222 33567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC-----CC
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCP---SRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP-----PN 496 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P---~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~-----~~ 496 (614)
.+.+.+..+-.+++|++|+..|.+++++-- .......+..+.|+|.+|+++|+|++|...+..||.+.-. +.
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 889999999999999999999999998753 3223467889999999999999999999999999987521 11
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
...+.++++|.++..++.+.+|...|.+++...
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 146899999999999999999999999998663
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.89 E-value=6.9e-05 Score=72.31 Aligned_cols=100 Identities=7% Similarity=-0.161 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI 541 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl 541 (614)
....+-.|.-++..|++++|++.++....+||. +...|+.+|.++..+|+|++|+..|.+++.++|+++.+..+...
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 777888999999999999999999999999999 99999999999999999999999999999999976655433332
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047433 542 PYYAARMISKHMNALWVFGGARSKIL 567 (614)
Q Consensus 542 ~~y~~r~i~Kqmea~~lF~~Ai~k~~ 567 (614)
- .-.+++.-.+...|+.++....
T Consensus 112 c---~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 C---YLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred H---HHHcCCHHHHHHHHHHHHHHhc
Confidence 2 2235555667788999988764
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.88 E-value=0.00019 Score=83.69 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 047433 413 EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS 492 (614)
Q Consensus 413 ~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd 492 (614)
.|-+.+.+.....+...|..+-+.|+.+.|......|-.++|.+ ...|.-.+.-..++|.+..|+-.|++||+++
T Consensus 163 ~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d-----~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 163 MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD-----YELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 34444555677789999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 493 NPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 493 P~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
|. +.+.+|+|+..|.++|++..|+..|.+.+.++|
T Consensus 238 p~---n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 238 PS---NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred Cc---chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99 999999999999999999999999999999998
No 121
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.86 E-value=2.9e-06 Score=90.05 Aligned_cols=191 Identities=12% Similarity=-0.034 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHHHHhhchhhhhhccCCCcCc-H-HHHH-------HHHHHhhhhhhh-ccCcHHHHHHHHHHHHHHHHHH
Q 047433 334 PDTRYKVIETAALFLIDLVELNSLLDRPKNL-G-EAIT-------RALLLDYKLTEQ-KFKNKKVQKALEEIWELKVERR 403 (614)
Q Consensus 334 ~~try~v~dka~~aLvDLseL~~Lg~~~k~l-G-e~it-------~aLl~dy~~~~~-~p~n~e~~~aL~el~~lkvEr~ 403 (614)
|+.+|.-+.+.+.+-+|..+-..|....-+. . .... .....||+.+.. .|++.++...+..+..++ |+.
T Consensus 137 RA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~-E~~ 215 (536)
T KOG4648|consen 137 RALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR-ERK 215 (536)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH-hhh
Confidence 4556666666666666666655443220000 0 0000 111156666655 788888888888777766 222
Q ss_pred HHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHH
Q 047433 404 KREKMMMMSE-EKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAI 482 (614)
Q Consensus 404 erEk~~~ls~-eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI 482 (614)
-.++ .... .+.......+...+..|+.+++.|.|+-||..|+..+.....+ ..+..| +..|.+.-+|+.|+
T Consensus 216 I~~K--sT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~-----~~L~~~-~~~~~KI~~~~~~~ 287 (536)
T KOG4648|consen 216 IATK--STPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS-----NQLRIS-DEDIDKIFNSNCGI 287 (536)
T ss_pred HHhh--cCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCcc-----ccCccc-HHHHHHHhhcchhH
Confidence 2222 1111 0011222344457899999999999999999999999988776 667777 99999999999999
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433 483 SDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS 536 (614)
Q Consensus 483 ~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~ 536 (614)
.+|.+++-++|. +.++.-+++.+...+|...|+..+++.++.+.|+...+.
T Consensus 288 ~~~~~~~~~~~s---~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 288 IEEVKKTNPKPT---PMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred HHHHHhcCCCCC---cCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence 999999999999 999999999999999999999999999999999766543
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.00015 Score=82.99 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+.+....|+..+..++|++|...++.+++++|-. ...|+++|.|.+++++++.|..+|++.+.++|+ +..+
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-----~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~ea 555 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-----LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEA 555 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-----hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhh
Confidence 44456667777888899999999999999999998 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
|.+++.+|..+|+-.+|...+.++++.+-
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999963
No 123
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=2.9e-05 Score=62.46 Aligned_cols=57 Identities=18% Similarity=-0.013 Sum_probs=53.5
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 472 HLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 472 ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+++.|+|++|+..+++++..+|+ +..+++.+|.+|...|++++|...+.+++...|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46789999999999999999999 9999999999999999999999999999999884
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00051 Score=74.82 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcH------------------
Q 047433 418 EMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPD------------------ 479 (614)
Q Consensus 418 ~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdye------------------ 479 (614)
........+..+|+.+...|+.++|+-.|..|+.+.|.. ..+|..+-.||+..|++.
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-----L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-----LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 334466789999999999999999999999999999987 777777777777655544
Q ss_pred ------------------HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 480 ------------------AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 480 ------------------eAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+|...++++|+++|. +.+|-..+|..+..-|.+++++..+++.+...|+
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~---Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI---YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCc---cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 466667777788888 8999999999999999999999999999998874
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.00064 Score=74.55 Aligned_cols=91 Identities=21% Similarity=0.150 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ 507 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~ 507 (614)
..+..++..++-.+|+....++|...|.+ ..++.--|..+++.++|+.|+..+++|+++.|. ..++|+.++.
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~---~f~~W~~La~ 276 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQD-----SELLNLQAEFLLSKKKYELALEIAKKAVELSPS---EFETWYQLAE 276 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hHHHHHHHHH
Confidence 35666667788899999999999999999 999999999999999999999999999999999 9999999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 047433 508 AYDMKGLGRESLMDCIMFI 526 (614)
Q Consensus 508 Al~~LG~yeEAL~df~kAL 526 (614)
+|..+|++++|+..++.+-
T Consensus 277 ~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 277 CYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHhcCc
Confidence 9999999999997665443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.00018 Score=79.52 Aligned_cols=99 Identities=22% Similarity=0.101 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
+--+-..|..+++.++.++|++.+.+++.+.|.. ..+..|+|++|++.|++.+||...++.+.-+|+ ++..|
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-----~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~---dp~~w 411 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNS-----PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE---DPNGW 411 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---CchHH
Confidence 3355667888999999999999999999999998 999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
..+|++|..+|+-.+|...+-+.+.+.
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 999999999999999998888888774
No 127
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.77 E-value=0.0046 Score=67.49 Aligned_cols=193 Identities=9% Similarity=-0.132 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhh
Q 047433 297 KNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDY 376 (614)
Q Consensus 297 ~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy 376 (614)
.|.+..+.+++..|+-. +......-+.+..+|++.....+.+.....+ . .+..+.......+
T Consensus 171 ~Al~~l~~l~~~~P~~~-----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~----------~---~~~~~~~l~~~a~ 232 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHK-----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL----------F---DDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC----------C---CHHHHHHHHHHHH
Confidence 67788888888887766 7777888888888888776665544433311 0 0111111111111
Q ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047433 377 KLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR 456 (614)
Q Consensus 377 ~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~ 456 (614)
......-........+...+. ..+.+ .+.........|..+...|++++|+..+.++++..|++
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~------------~~p~~----~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWK------------NQPRH----RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHH------------HCCHH----HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 000000000001112222222 12211 11244567778899999999999999999999999987
Q ss_pred CcchhHHH--HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHcCC
Q 047433 457 PKNERMVL--YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC--KSLWRRSQAYDMKGLGRESLMDCI--MFINGCI 530 (614)
Q Consensus 457 ~~~~~a~l--ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~--KAyyRRA~Al~~LG~yeEAL~df~--kALkl~P 530 (614)
... ..-+....+..++..+++..++++++.+|+ ++ ..+.-+|.+++..|++++|.+.|+ .+++..|
T Consensus 297 -----~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~---~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 297 -----RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD---KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred -----ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 321 122334445568899999999999999999 88 778899999999999999999999 5778877
Q ss_pred C
Q 047433 531 R 531 (614)
Q Consensus 531 ~ 531 (614)
+
T Consensus 369 ~ 369 (409)
T TIGR00540 369 D 369 (409)
T ss_pred C
Confidence 4
No 128
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.0019 Score=67.19 Aligned_cols=190 Identities=15% Similarity=0.010 Sum_probs=119.7
Q ss_pred hhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHH
Q 047433 321 YMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKV 400 (614)
Q Consensus 321 y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkv 400 (614)
|...+......++.+..-.++.++..+... +++. ...+..+..+.. .|++. +..++...+.+..++..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~------~~~~-~~Aa~~~~~Aa~-~~k~~----~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEK------LGDK-FEAAKAYEEAAN-CYKKG----DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHH------TT-H-HHHHHHHHHHHH-HHHHT----THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHH------cCCH-HHHHHHHHHHHH-HHHhh----CHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666555432 2222 333444443332 23331 22233333333333331
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCc
Q 047433 401 ERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWL-GEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREP 478 (614)
Q Consensus 401 Er~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~-GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdy 478 (614)
+..+ ....+..+.+.|..+... |++++|++.|.+|+++.... .......++.+.|.++.++|+|
T Consensus 106 ~~G~--------------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGR--------------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT---------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCc--------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 0111 122577888889988888 99999999999999985332 3445678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCC---CccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433 479 DAAISDATRALCLSNPP---NSHCK-SLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS 536 (614)
Q Consensus 479 eeAI~D~~~ALeLdP~~---~~~~K-AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~ 536 (614)
++|+..++++....-.. ..+++ .+++.+.|+...|++..|...|++....+|+-.++.
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 99999999998754321 22454 456788899999999999999999999998766543
No 129
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.75 E-value=0.00041 Score=64.36 Aligned_cols=103 Identities=21% Similarity=0.160 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-------chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------c
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK-------NERMVLYSNRAQCHLLLREPDAAISDATRALC-------L 491 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~-------~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-------L 491 (614)
...+|....+.|-|++|...|.+|+++.-+-+. ..-+.+|.-++.++..+|+|++++....++|. |
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345667778899999999999999987644211 12367899999999999999999999999984 5
Q ss_pred CCCC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 492 SNPP-NSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 492 dP~~-~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+.+. +.++.+.++||.++..+|+.+||+..|+++.++
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5552 446778899999999999999999999999887
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.00029 Score=72.64 Aligned_cols=107 Identities=12% Similarity=0.064 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS 506 (614)
Q Consensus 427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA 506 (614)
....+.+...|+-+.+...-+++....|.+ ..++.-.+...+..|+|..|+..+++|..++|+ +.++|.-+|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-----~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~---d~~~~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKD-----RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT---DWEAWNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCccc-----HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC---ChhhhhHHH
Confidence 666778888888888888888887778887 777777899999999999999999999999999 999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433 507 QAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI 541 (614)
Q Consensus 507 ~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl 541 (614)
.+|.++|++++|-..|.+++++.|+.+.+-.+..+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 99999999999999999999999976655434443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.71 E-value=0.00037 Score=77.01 Aligned_cols=105 Identities=14% Similarity=0.049 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.....+..+...+..|++++|....+..|...|++ +.+..-++..+++.++..+|++-+++++.++|. ..-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l 376 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----PYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLL 376 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHH
Confidence 34467888899999999999999999999999999 999999999999999999999999999999999 8889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
.+.+|++|.+.|++.+|+..++..+.-+|.+++
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 999999999999999999999999999885443
No 132
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.70 E-value=0.00027 Score=83.91 Aligned_cols=88 Identities=13% Similarity=-0.019 Sum_probs=45.7
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC
Q 047433 435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL 514 (614)
Q Consensus 435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ 514 (614)
..|++++|+..+++++.-.|.. ...+...|..|..+|+|++|+..++++++.+|+ +..+++-++.++..+++
T Consensus 80 ~~G~~~~A~~~~eka~~p~n~~-----~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 80 WAGRDQEVIDVYERYQSSMNIS-----SRGLASAARAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIMTQADAGR 151 (822)
T ss_pred HcCCcHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCC
Confidence 3455555555555555222222 223333344555555555555555555555555 55555555555555555
Q ss_pred HHHHHHHHHHHHHcCC
Q 047433 515 GRESLMDCIMFINGCI 530 (614)
Q Consensus 515 yeEAL~df~kALkl~P 530 (614)
.++|+..++++.+.+|
T Consensus 152 ~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 152 GGVVLKQATELAERDP 167 (822)
T ss_pred HHHHHHHHHHhcccCc
Confidence 5555555555555554
No 133
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.66 E-value=0.0017 Score=67.09 Aligned_cols=130 Identities=13% Similarity=0.052 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
-+..|.++|....+.|+|++|+..|.......|.. +....+....+.++++.++|+.|+...++=+.+.|+++--.-+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 35589999999999999999999999999988864 4446788889999999999999999999999999994334468
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCC-hHhhcchHHHHHHHHHHHH
Q 047433 502 LWRRSQAYDMK--------GLGRESLMDCIMFINGCIRSET-TSKRVKIPYYAARMISKHM 553 (614)
Q Consensus 502 yyRRA~Al~~L--------G~yeEAL~df~kALkl~P~~~D-~~~k~kl~~y~~r~i~Kqm 553 (614)
+|-+|.+++.. .-..+|+.+|+.++...|+++= ++++.++.+...++-++.|
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 88899987763 4457899999999999998864 4555555555555544444
No 134
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00077 Score=74.00 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+.+..|.+..-+..|++++|...|+.||.-|.. .+.|+|+.|..+..+|+.++|+..|.+.-.+
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas---c~ealfniglt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDAS---CTEALFNIGLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchH---HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence 555566666666677777777777777777777 7778888888888888888888777765544
No 135
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00011 Score=80.39 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.+..+.++||..|..|+++.|.+.|.+||.-+... ..+++|.+..+-++|+.++|+..+-+.-.+--+ ++..
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-----~ealfniglt~e~~~~ldeald~f~klh~il~n---n~ev 560 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-----TEALFNIGLTAEALGNLDEALDCFLKLHAILLN---NAEV 560 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-----HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh---hHHH
Confidence 45678899999999999999999999999988877 899999999999999999999999887666666 7899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
+++.+.+|..+.+..+|++.+-++..+-|++
T Consensus 561 l~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999998853
No 136
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.0036 Score=66.68 Aligned_cols=105 Identities=15% Similarity=-0.003 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
.++...-+.+-+..+|+.||+.-++...+.+...+.+++.+|.-+|+.++...+.+.|+....+|++-||+ .+.|=.
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~---cvRAsi 218 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK---CVRASI 218 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc---ceehhh
Confidence 35667777888889999999999999999999888999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
-+|.++...|+|+.|++.++.+++.+|.
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 9999999999999999999999999873
No 137
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.62 E-value=0.00094 Score=72.83 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERM-VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a-~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
.+...|..+...|+++.|...|.++.+..|+. . .+...++..++..|+++.|+..+++.++..|+ +..++.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-----~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~~~l~ 191 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGND-----NILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HKEVLK 191 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHH
Confidence 45677888999999999999999999988876 3 35555699999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
-.+.++...|++++|+..+.+.++..+
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998854
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=97.61 E-value=0.00062 Score=75.36 Aligned_cols=131 Identities=11% Similarity=-0.061 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---hhCCCCCcchhHHHHHHHHHHHHHc---------CCcHHHHHHHHHHH
Q 047433 425 LIKQEAKHLFWLGE---IEEAAMKYTEAL---GVCPSRPKNERMVLYSNRAQCHLLL---------REPDAAISDATRAL 489 (614)
Q Consensus 425 ~lK~~GN~lFk~Gd---yeeAI~~YtkAI---el~P~~~~~~~a~lysNRA~~ylkL---------GdyeeAI~D~~~AL 489 (614)
.+..+|...+..+. .+.|+..+++|+ +++|.+ +.+|.-+|.||+.. .+-.+|...+++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~-----a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK-----TECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc-----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 45777877766664 568999999999 999999 99999999999875 24567889999999
Q ss_pred hcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433 490 CLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKI 566 (614)
Q Consensus 490 eLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~ 566 (614)
++||. ++.+++.+|.++...|+++.|...|++++.++|++.+... ..-...-+-++..++...+.+++..+
T Consensus 332 eld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~---~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 332 DITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYY---YRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHH---HHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 99999 9999999999999999999999999999999996554321 11122222344444555555554443
No 139
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.58 E-value=0.014 Score=63.75 Aligned_cols=131 Identities=9% Similarity=-0.096 Sum_probs=86.8
Q ss_pred hhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 451 GVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 451 el~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
...|++ +.++...|..+...|+.++|.....++++..|+ .....-.+.+ ..++.+++++.+++.++..|
T Consensus 257 ~~~~~~-----~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~----~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 257 RKTRHQ-----VALQVAMAEHLIECDDHDTAQQIILDGLKRQYD----ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----HHHHHHHhhc--cCCChHHHHHHHHHHHhhCC
Confidence 334556 889999999999999999999999999995444 4443333333 44999999999999999999
Q ss_pred CCCChHhhcchHHHHHHHHHH---HHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHh
Q 047433 531 RSETTSKRVKIPYYAARMISK---HMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMME 599 (614)
Q Consensus 531 ~~~D~~~k~kl~~y~~r~i~K---qmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~ 599 (614)
++. .... ...++.-+ --.+...|..+.+..++. .....-.......|..+++.+.+.+.+..
T Consensus 326 ~~~--~l~l----~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 DTP--LLWS----TLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCH--HHHH----HHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 543 3222 22222211 234556677776665443 22233444556677777777777776553
No 140
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0015 Score=65.79 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.+.-+-++|-.+.+.+.++.||...++||++.|.+ -.++..||.+|-++..|++|+.||.+.++++|.
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-----~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-----EKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 44567889999999999999999999999999999 888999999999999999999999999999999
No 141
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00042 Score=77.75 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=46.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCCccHHHHHHH
Q 047433 430 AKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL----SNPPNSHCKSLWRR 505 (614)
Q Consensus 430 GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL----dP~~~~~~KAyyRR 505 (614)
|-++...++++-|-..|.+|+.++|.+ +..+.-.|.+.+..+.|.+|+..+..++.. ++....+.-.+.++
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~D-----plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSD-----PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCc-----chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH
Confidence 344444444444444444444555554 444555555555555555555555555421 11111122234455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 506 SQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 506 A~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
|.++.+++++++|+..|+++|.++|+
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 55555555555555555555555554
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.53 E-value=0.00046 Score=82.17 Aligned_cols=140 Identities=10% Similarity=0.044 Sum_probs=99.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcch-
Q 047433 382 KFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNE- 460 (614)
Q Consensus 382 ~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~- 460 (614)
.|.+.++...|....... .+.+... .+..+.++..+.....+.-.|-.+++.+++.+|... .++.+-+.+.+..
T Consensus 27 ~p~n~~a~~~Li~~~~~~-~~~deai--~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSE-NLTDEAK--DICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CcchHHHHHHHHHHHHhc-CCHHHHH--HHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 455555555554444211 1222222 344444445555666777777777777777776666 5665555441000
Q ss_pred -------------hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433 461 -------------RMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFIN 527 (614)
Q Consensus 461 -------------~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALk 527 (614)
...++..+|.||-++|++++|+..++++|++||+ ++.++-+.|..|... +.++|+..+.+|+.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~---n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD---NPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 0368889999999999999999999999999999 999999999999999 99999999999987
Q ss_pred cCC
Q 047433 528 GCI 530 (614)
Q Consensus 528 l~P 530 (614)
..-
T Consensus 178 ~~i 180 (906)
T PRK14720 178 RFI 180 (906)
T ss_pred HHH
Confidence 743
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.53 E-value=0.00071 Score=70.34 Aligned_cols=104 Identities=13% Similarity=-0.040 Sum_probs=75.9
Q ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-hHhhc
Q 047433 462 MVLYSNRAQCH-LLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET-TSKRV 539 (614)
Q Consensus 462 a~lysNRA~~y-lkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D-~~~k~ 539 (614)
....++.|..+ ++.|+|++|+..|+..++..|+.+....++|.+|.+|+..|++++|+..|+++++..|+++. +++..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46678888887 66899999999999999999994333689999999999999999999999999999997654 22222
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433 540 KIPYYAARMISKHMNALWVFGGARSKI 566 (614)
Q Consensus 540 kl~~y~~r~i~Kqmea~~lF~~Ai~k~ 566 (614)
++. ......++.-.+...|..++...
T Consensus 222 klg-~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 222 KVG-VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHHC
Confidence 222 11112233344555555555444
No 144
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.53 E-value=0.00014 Score=51.33 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.+|+|+|.+|+.+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 145
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.52 E-value=0.00021 Score=82.63 Aligned_cols=115 Identities=23% Similarity=0.237 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhc
Q 047433 414 EKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL--REPDAAISDATRALCL 491 (614)
Q Consensus 414 eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL--GdyeeAI~D~~~ALeL 491 (614)
++.......+...+.+||.+|+.++|.+|...|..++.+-|.+ ....+..+.|++.||+.+ |+|..++.+|+-|+..
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~ 122 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-HHVVATLRSNQASCYMQLGLGEYPKAIPECELALES 122 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc
Confidence 4555566688899999999999999999999999999999964 667789999999999875 7999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 492 SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 492 dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
.|. ..+++++|+.+|..++.++-|++|+.-..+..|+.
T Consensus 123 ~p~---i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 123 QPR---ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred cch---HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999 99999999999999999999999988888888864
No 146
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.50 E-value=0.0022 Score=59.39 Aligned_cols=102 Identities=20% Similarity=0.111 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-----------------cchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-----------------KNERMVLYSNRAQCHLLLREPDAAISDAT 486 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-----------------~~~~a~lysNRA~~ylkLGdyeeAI~D~~ 486 (614)
..+...|...-..|+.+.++..|.+++.+..... ......+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3556667778888999999999999998864320 12345567788888999999999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 487 RALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 487 ~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+++.++|. +-.+|..+-.+|..+|++.+|+..|+++.+.
T Consensus 87 ~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 87 RALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999998655
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=97.49 E-value=0.00064 Score=75.27 Aligned_cols=88 Identities=8% Similarity=-0.184 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y 515 (614)
..+-.+|.+.-.+|++++|.+ +.++...|.++...++++.|+..+++|+.++|+ ...+||.+|.++...|+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~D-----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn---~A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVD-----GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD---IASLYYYRALVHFHNEKI 388 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCH
Confidence 445678999999999999999 999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 047433 516 RESLMDCIMFINGCIR 531 (614)
Q Consensus 516 eEAL~df~kALkl~P~ 531 (614)
++|+..++++++++|.
T Consensus 389 ~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 389 EEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHhccCch
Confidence 9999999999999984
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.47 E-value=0.0013 Score=78.32 Aligned_cols=133 Identities=9% Similarity=-0.115 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-----
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN----- 496 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~----- 496 (614)
....+-...+.+...+++++|+...+.+++..|+. ..+|+-.|..+++.+++.+|... .++.+-+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~-----i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS-----ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc-----eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 45578888888889999999999999999999999 99999999999999988887766 6666666511
Q ss_pred -----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433 497 -----------SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK 565 (614)
Q Consensus 497 -----------~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k 565 (614)
.+-.|++.+|.||..+|+.++|...|+++++++|+ ++.+-+.+.++.... .--.+...+.+|+..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--NPEIVKKLATSYEEE--DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 02279999999999999999999999999999985 444444555444333 223334445555443
No 149
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.46 E-value=0.002 Score=63.84 Aligned_cols=74 Identities=15% Similarity=-0.012 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT 535 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~ 535 (614)
+..++..|..++..|+|.+|+..++.++...|.++.-.++.+.+|.+++..|++++|+..|+++++..|+++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 67889999999999999999999999999999988888999999999999999999999999999999987763
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0058 Score=63.30 Aligned_cols=98 Identities=13% Similarity=-0.080 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.+|.+--..-..|+-.+||....+-++..+.+ .++|.-+|..|+.+|+|++|.-.+.+.+-++|. ++--+-|
T Consensus 122 ~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~---n~l~f~r 193 (289)
T KOG3060|consen 122 IRKRKLAILKAQGKNLEAIKELNEYLDKFMND-----QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF---NPLYFQR 193 (289)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC---cHHHHHH
Confidence 34444444555677779999999999999999 999999999999999999999999999999999 8888888
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHcCC
Q 047433 505 RSQAYDMKG---LGRESLMDCIMFINGCI 530 (614)
Q Consensus 505 RA~Al~~LG---~yeEAL~df~kALkl~P 530 (614)
+|.+++-+| +++-|.+.|.++++++|
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 899988876 56778999999999987
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0034 Score=65.03 Aligned_cols=133 Identities=14% Similarity=-0.034 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
..+-.|-.+-..|+|++|++.|+..|+-+|.+ ...|-.+-.+...+|+.-+||+....-++.-+. ...||+.
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-----~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~---D~EAW~e 159 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-----TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN---DQEAWHE 159 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC---cHHHHHH
Confidence 45556667777899999999999999999999 888888888888899999999999999999999 9999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhh-cchHHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433 505 RSQAYDMKGLGRESLMDCIMFINGCIRSETTSKR-VKIPYYAARMISKHMNALWVFGGARSKI 566 (614)
Q Consensus 505 RA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k-~kl~~y~~r~i~Kqmea~~lF~~Ai~k~ 566 (614)
++..|...|+|+.|.-++++++=+.|.++--..+ ..+. |......+...++..|..++...
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~-Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL-YTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999853321111 1233 22233444455566777776554
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.44 E-value=0.0024 Score=75.57 Aligned_cols=101 Identities=14% Similarity=0.002 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
....|..+|-.+.+.+++..||..++-|+..+|.+ ..+|.-++.+|...|+|..|++.+++|..++|. +.-+
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-----~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~---s~y~ 632 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-----YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL---SKYG 632 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchh-----HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH---hHHH
Confidence 34457779999999999999999999999999999 999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
-|..|.....+|+|++|+..+.+.+....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887643
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.39 E-value=0.00086 Score=61.97 Aligned_cols=71 Identities=18% Similarity=0.032 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
.+.+++|-++-.+|+.++|+..|++|+...........++..+|.++..+|++++|+..+++++...|+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 46889999999999999999999999998665333578999999999999999999999999999988533
No 154
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.38 E-value=0.0077 Score=68.98 Aligned_cols=159 Identities=17% Similarity=0.029 Sum_probs=105.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 047433 431 KHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYD 510 (614)
Q Consensus 431 N~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~ 510 (614)
...|...+|+.|-..+.+|-...|+. .+|..-+...--+++.++|+..+.++|+.-|+ +.|.|..+|+++.
T Consensus 626 Kle~en~e~eraR~llakar~~sgTe------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~---f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSISGTE------RVWMKSANLERYLDNVEEALRLLEEALKSFPD---FHKLWLMLGQIEE 696 (913)
T ss_pred HHhhccccHHHHHHHHHHHhccCCcc------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc---hHHHHHHHhHHHH
Confidence 33456666777777777777766653 55666666666789999999999999999999 9999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHH---HHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhh
Q 047433 511 MKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKH---MNALWVFGGARSKILSSPVNNVQESYGENKSGIEE 587 (614)
Q Consensus 511 ~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kq---mea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~e 587 (614)
.+++.+.|...|..-++.+|.+..- =....++-.++ ..+.-.+.++..+.+....-.-..-.-+--.|+.+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipL------WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPL------WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchH------HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 9999999999999999999954321 11112222222 23344455555444333221111112233467777
Q ss_pred hHHHHHHHHHHhccccc
Q 047433 588 QRYCDMIRTMMEKKNLI 604 (614)
Q Consensus 588 Q~~dD~iral~~~~~~~ 604 (614)
|+-.-|-++|++=|+.-
T Consensus 771 ~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHHHHHhCCccc
Confidence 88888888888877653
No 155
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.0015 Score=61.87 Aligned_cols=101 Identities=19% Similarity=0.090 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc-chHH
Q 047433 465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV-KIPY 543 (614)
Q Consensus 465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~-kl~~ 543 (614)
+--.|.+...-|+.+.|+.-+.++|.+-|. +..+|.+|++++.-.|+.++|+.|+.+++++.-+..-..-+. .-..
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 334456667889999999999999999999 999999999999999999999999999999964221111011 1122
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433 544 YAARMISKHMNALWVFGGARSKILS 568 (614)
Q Consensus 544 y~~r~i~Kqmea~~lF~~Ai~k~~~ 568 (614)
...|+.+..-.+...|..|....++
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCH
Confidence 3344555556677788887766543
No 156
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.34 E-value=0.0018 Score=70.73 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-cchhH
Q 047433 384 KNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP-KNERM 462 (614)
Q Consensus 384 ~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-~~~~a 462 (614)
.+.++..++....++..|.-+-- +.+..+...-..+-+.||.+|-.|+|+.||..-..-|.+..... +-..-
T Consensus 163 f~~ev~~al~~Av~fy~eNL~l~-------~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeR 235 (639)
T KOG1130|consen 163 FNAEVTSALENAVKFYMENLELS-------EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAER 235 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 46677777877777662221111 12223444566788899999999999999999998888865431 12234
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCL----SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeL----dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
.+++|+|.||+-+|+++.|++.|+.++.| ... ......-|-+|.+|.-+.+++.|+.++++-|.+.
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r-~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR-TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999987654 222 0134566788888888888888888888877663
No 157
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.33 E-value=0.0079 Score=57.35 Aligned_cols=123 Identities=13% Similarity=-0.027 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI 541 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl 541 (614)
+..+++.|...++.|+|.+|+..++....-.|..+....+.+.++-+|+..|++++|+..++++++++|.+++.+ .
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd----Y 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD----Y 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc----H
Confidence 677889999999999999999999999999998777789999999999999999999999999999999877643 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcccc
Q 047433 542 PYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNL 603 (614)
Q Consensus 542 ~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~ 603 (614)
..|...+..- .+....|.... ....+.....+++.++.+.+..=|+.
T Consensus 86 a~Y~~gL~~~-~~~~~~~~~~~--------------~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 86 AYYMRGLSYY-EQDEGSLQSFF--------------RSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHH-HHhhhHHhhhc--------------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 2232222221 11122222222 11122445557888888887777764
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00043 Score=58.49 Aligned_cols=59 Identities=27% Similarity=0.264 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA 488 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A 488 (614)
..+...|..+|+.|+|++|+..+++ ++.+|.+ ...+.-.|.|++++|+|++|+..+.+|
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-----~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-----PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3567799999999999999999999 8888876 778888899999999999999998875
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.014 Score=58.40 Aligned_cols=103 Identities=17% Similarity=0.042 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGV-CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel-~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.......||++...|+|.+|...|.+++.- -..+ +.....+|++.+.++++.+|..-.+...+-+|. ...+..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~ 162 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRSPDG 162 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCCCCc
Confidence 345667899999999999999999999973 3455 778889999999999999999999999999986 234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
..-.|.+|..+|++.+|...|+.++...|+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 777889999999999999999999999883
No 160
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0028 Score=69.30 Aligned_cols=106 Identities=12% Similarity=-0.042 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC 499 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~ 499 (614)
...+..|.--|..+|..++|..|+..-.++|..+|.+ ..+|.-.|..++.+|+.++|+-.|+.|+.|.|. ..
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-----~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---rL 368 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-----HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---RL 368 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-----chHHHhccHHHHhccchHHHHHHHHHHHhcchh---hH
Confidence 3466788889999999999999999999999999999 999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
..|-.+-.+|...|++.||...-+.+++..|++.
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA 402 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999999999998888654
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.0052 Score=63.06 Aligned_cols=75 Identities=12% Similarity=-0.206 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS 536 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~ 536 (614)
+..++..|.-+++.|+|++|+..+++++...|..+.-..+.+.+|.+|+.++++++|+..|+++++..|++++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 677888999999999999999999999999999555567789999999999999999999999999999876643
No 162
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.20 E-value=0.00072 Score=47.60 Aligned_cols=33 Identities=15% Similarity=-0.014 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+++|+++|.++..+|++++|+.+|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 478999999999999999999999999999884
No 163
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.18 E-value=0.024 Score=64.48 Aligned_cols=76 Identities=11% Similarity=-0.080 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc
Q 047433 460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV 539 (614)
Q Consensus 460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~ 539 (614)
....+++.+|+.|..+|++++|+...++||+..|+ .++.|+.+|.+|...|++++|...++.+-++++. |.-.+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--DRyiNs 266 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELDLA--DRYINS 266 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--hHHHHH
Confidence 45567889999999999999999999999999999 9999999999999999999999999999999763 444344
Q ss_pred c
Q 047433 540 K 540 (614)
Q Consensus 540 k 540 (614)
+
T Consensus 267 K 267 (517)
T PF12569_consen 267 K 267 (517)
T ss_pred H
Confidence 3
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.15 E-value=0.00045 Score=49.86 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 047433 485 ATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLM 520 (614)
Q Consensus 485 ~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~ 520 (614)
|++||+++|+ ++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhcC
Confidence 7899999999 99999999999999999999863
No 165
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.12 E-value=0.0005 Score=49.62 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHH
Q 047433 445 KYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAIS 483 (614)
Q Consensus 445 ~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~ 483 (614)
.|++||+++|++ +.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-----~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-----AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-----HHHHHHHHHHHHHCcCHHhhcC
Confidence 389999999999 9999999999999999999973
No 166
>PRK10941 hypothetical protein; Provisional
Probab=97.12 E-value=0.0031 Score=65.99 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=72.1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 453 CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 453 ~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
.|.+.+..+.....|+=.+|++.++++.|+...++.+.++|+ .+.-+.-||.+|.++|.+..|+.|++.+++.+|+.
T Consensus 172 ~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 172 DEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 344445677788999999999999999999999999999999 88778889999999999999999999999999976
Q ss_pred CChH
Q 047433 533 ETTS 536 (614)
Q Consensus 533 ~D~~ 536 (614)
++.+
T Consensus 249 p~a~ 252 (269)
T PRK10941 249 PISE 252 (269)
T ss_pred hhHH
Confidence 6544
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.11 E-value=0.01 Score=61.67 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhcCCCC---C
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLL-REPDAAISDATRALCLSNPP---N 496 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkL-GdyeeAI~D~~~ALeLdP~~---~ 496 (614)
.+..+.+ +-..++.+++++|+..|++|+++.-.. .....+.++.+.|.+|... |++++|+..|.+|+++-... .
T Consensus 74 Aa~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 74 AAKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 3445554 444556669999999999999975322 2344578999999999998 99999999999999873221 1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 497 SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 497 ~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
...+.+.+.|.++..+|+|++|+..|+++.+..-+
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 13567788999999999999999999999987543
No 168
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.10 E-value=0.0064 Score=64.05 Aligned_cols=87 Identities=17% Similarity=0.008 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433 437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR 516 (614)
Q Consensus 437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye 516 (614)
.++.+|.-.|++..+..|.. +.+++..|.|++.+|+|++|.+.+.+|+..+|+ ++.++.++..+...+|+..
T Consensus 181 e~~~~A~y~f~El~~~~~~t-----~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~---~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGST-----PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN---DPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--S-----HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC---HHHHHHHHHHHHHHTT-TC
T ss_pred hhHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHhCCCh
Confidence 46999999999988877777 889999999999999999999999999999999 9999999999999999994
Q ss_pred H-HHHHHHHHHHcCCC
Q 047433 517 E-SLMDCIMFINGCIR 531 (614)
Q Consensus 517 E-AL~df~kALkl~P~ 531 (614)
+ +-+.+.+.....|+
T Consensus 253 ~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHCHHHTTT
T ss_pred hHHHHHHHHHHHhCCC
Confidence 4 44566666667663
No 169
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.07 E-value=0.0032 Score=71.74 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR 505 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR 505 (614)
|-..|-..-..++|.+||.+|+.|+.+.|++ ..++.-+|....++++|+.....=.+-++++|. +...|...
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-----~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~---~ra~w~~~ 149 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-----LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS---QRASWIGF 149 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---hHHHHHHH
Confidence 5667777778889999999999999999999 999999999999999999999999999999999 88899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 506 SQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 506 A~Al~~LG~yeEAL~df~kALkl~ 529 (614)
+.++..+|++..|+...+...+..
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998888876
No 170
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.03 E-value=0.0011 Score=46.11 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 464 LYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
++.++|.+|+++|+|++|+..++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 171
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.99 E-value=0.0016 Score=45.37 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+++++.+|.++..+|++++|+..|+++++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 468999999999999999999999999999985
No 172
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.97 E-value=0.0013 Score=49.49 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ 507 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~ 507 (614)
.++..+|.+|..+|++++|+..++++++.+|+ +..++..+|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhhh
Confidence 46788899999999999999999999999999 8888888775
No 173
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.93 E-value=0.0032 Score=67.21 Aligned_cols=110 Identities=13% Similarity=0.018 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 047433 413 EEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS 492 (614)
Q Consensus 413 ~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd 492 (614)
.+.+...+..+.-+...+..+-..+++++|++.|..+++..|.+ .++..-.|.-|+--++++-|+..|++.|.+.
T Consensus 280 ~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-----vEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 280 GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN-----VEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-----ceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 34444444555566677777777788888888888888888888 7777777778888888888888888888888
Q ss_pred CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 493 NPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 493 P~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
-. ++..|.+.|.|.+.-++++-++..|++++...-
T Consensus 355 ~~---speLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 355 AQ---SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred CC---ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 88 888888888888888888888888888887754
No 174
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.079 Score=60.34 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC--------------
Q 047433 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS-------------- 492 (614)
Q Consensus 427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd-------------- 492 (614)
.+++-.+|+.+..++|+..|+ .+++.+ .-+..-+|++++++|+|++|+..|...++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLD-----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 467777788888888888887 334444 4566778888888888888888777764432
Q ss_pred -------------CCCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCC-hHh-------hcchHHHH
Q 047433 493 -------------NPPN-SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC-----IRSET-TSK-------RVKIPYYA 545 (614)
Q Consensus 493 -------------P~~~-~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~-----P~~~D-~~~-------k~kl~~y~ 545 (614)
|..+ .....+|+.|.++...|+|.+|++.++++++++ .++.. -+. +..+. |+
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla-yV 233 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA-YV 233 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH-HH
Confidence 2211 156789999999999999999999999995432 11111 111 22333 77
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433 546 ARMISKHMNALWVFGGARSKILSSP 570 (614)
Q Consensus 546 ~r~i~Kqmea~~lF~~Ai~k~~~~~ 570 (614)
.++.++.-++...|...+.......
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCCCc
Confidence 8888888888888888887764433
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.85 E-value=0.028 Score=49.99 Aligned_cols=98 Identities=20% Similarity=0.067 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
.....+......++++.|+..+.+++...+. . ...+.+++.++...+++..|+..+..++...|. ....++
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~ 240 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDDD-----AEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALY 240 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-----hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHh
Confidence 3444444466777777777777777777776 5 677777777777777777777777777777777 666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
..+..+...+.++++...+.++++..|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 777777766667777777777777766
No 176
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.83 E-value=0.015 Score=67.54 Aligned_cols=133 Identities=17% Similarity=0.001 Sum_probs=105.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047433 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRS 506 (614)
Q Consensus 427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA 506 (614)
...+....+.++-++|-.+..+|-.++|.. +..|+-+|.++...|.+.+|.+.|..|+.+||+ ++.+.--+|
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~-----~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~---hv~s~~Ala 725 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLS-----ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD---HVPSMTALA 725 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhh-----HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC---CcHHHHHHH
Confidence 344455555666788888999999999998 999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCHHHHHH--HHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 047433 507 QAYDMKGLGRESLM--DCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSP 570 (614)
Q Consensus 507 ~Al~~LG~yeEAL~--df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~ 570 (614)
.++.+.|+-.-|.. .+..+++++|.+. ++-..+. .+.+..+.--++...|..++....+.|
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~--eaW~~LG-~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNH--EAWYYLG-EVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCH--HHHHHHH-HHHHHccchHHHHHHHHHHHhhccCCC
Confidence 99999999988888 9999999988533 3333333 233333334566777777777765544
No 177
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.78 E-value=0.053 Score=62.42 Aligned_cols=103 Identities=16% Similarity=0.011 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
--+-|...|..+-+.++.+.|-+.|+..++.||.. ..+|.-++..--+.|..-.|-..++++.--||. +...
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-----ipLWllLakleEk~~~~~rAR~ildrarlkNPk---~~~l 755 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-----IPLWLLLAKLEEKDGQLVRARSILDRARLKNPK---NALL 755 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-----chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC---cchh
Confidence 44457788888888889999999999999999988 888888888888888899999999999999998 8888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
|.-.-+.-...|+.++|.....+||+-+|++
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 8888888888899999999999999888875
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.76 E-value=0.075 Score=47.19 Aligned_cols=107 Identities=20% Similarity=0.043 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhcCCCCCcc
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ-CHLLLREPDAAISDATRALCLSNPPNSH 498 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~-~ylkLGdyeeAI~D~~~ALeLdP~~~~~ 498 (614)
......+...|......+++..|+..+.+++...+.. ......... ++...|+++.|+..+.+++.++|.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (291)
T COG0457 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-----DLAEALLALGALYELGDYEEALELYEKALELDPELNEL 166 (291)
T ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch
Confidence 3455667788888888899999999999999987765 444555555 8999999999999999998877610116
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
...++.++..+...+++++|+..+.++++..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 777788888888899999999999999999774
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.72 E-value=0.032 Score=57.83 Aligned_cols=75 Identities=13% Similarity=-0.088 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS 536 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~ 536 (614)
+.-++|-|+..++-|+|++|+..++.+....|..+...++..-++.++++-++|++|+...++++++.|++++.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 678899999999999999999999999999999888899999999999999999999999999999999988765
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.014 Score=60.74 Aligned_cols=101 Identities=8% Similarity=-0.055 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-hHhhcchHH
Q 047433 465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET-TSKRVKIPY 543 (614)
Q Consensus 465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D-~~~k~kl~~ 543 (614)
.+|-|.-+++.|+|..|..-|..=++..|+...-..|+|-+|++++.+|+|++|...|..+++-.|+++. |+.-.|+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999996667789999999999999999999999999999998876 465567664
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcC
Q 047433 544 YAARMISKHMNALWVFGGARSKI 566 (614)
Q Consensus 544 y~~r~i~Kqmea~~lF~~Ai~k~ 566 (614)
+..++ ++.-.+...++.++++-
T Consensus 224 ~~~~l-~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 224 SLGRL-GNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHh-cCHHHHHHHHHHHHHHC
Confidence 44443 33345556667776654
No 181
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.65 E-value=0.015 Score=63.87 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------C-cch----hHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR--------P-KNE----RMVLYSNRAQCHLLLREPDAAISDATRALCL 491 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~--------~-~~~----~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL 491 (614)
.....|...|++++|..|+..|..||++|..- . .++ -.-+-..+..||+++++.+-|+....+.|-+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 34456778888899999999999999887652 1 112 2334568899999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCChHhhcchHHHHHHHHHHHHH
Q 047433 492 SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING---CIRSETTSKRVKIPYYAARMISKHMN 554 (614)
Q Consensus 492 dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl---~P~~~D~~~k~kl~~y~~r~i~Kqme 554 (614)
+|. +..-+.|+|.++..|.+|.+|-..+--+.=+ +-+ .++....-|+.|...|+.....
T Consensus 258 nP~---~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~-~~q~~S~lIklyWqamiEeAiT 319 (569)
T PF15015_consen 258 NPS---YFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG-SEQRISKLIKLYWQAMIEEAIT 319 (569)
T ss_pred Ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHhHHHHHHHHHHHHHHHHHh
Confidence 999 9999999999999999999998876555432 221 1222233455565556654443
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.036 Score=58.50 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHc---CC
Q 047433 438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMK---GL 514 (614)
Q Consensus 438 dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~L---G~ 514 (614)
..+.-+...+..|..+|++ +.-|.-+|.+|+.+|++..|...|.+|++|.|+ +...+.-.|.+++.. ..
T Consensus 137 ~~~~l~a~Le~~L~~nP~d-----~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~ 208 (287)
T COG4235 137 EMEALIARLETHLQQNPGD-----AEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQM 208 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcc
Confidence 3566777888889999999 999999999999999999999999999999999 999999999998876 35
Q ss_pred HHHHHHHHHHHHHcCCC
Q 047433 515 GRESLMDCIMFINGCIR 531 (614)
Q Consensus 515 yeEAL~df~kALkl~P~ 531 (614)
..++...|+++++++|.
T Consensus 209 ta~a~~ll~~al~~D~~ 225 (287)
T COG4235 209 TAKARALLRQALALDPA 225 (287)
T ss_pred cHHHHHHHHHHHhcCCc
Confidence 67888999999999884
No 183
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.59 E-value=0.00096 Score=71.30 Aligned_cols=86 Identities=22% Similarity=0.125 Sum_probs=77.2
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHH
Q 047433 475 LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMN 554 (614)
Q Consensus 475 LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqme 554 (614)
.|.++.||..|+.||+++|. ....|-.|+.++.++++...|+.||..+++++|+ ....-++..++.|+++.--+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~---~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D---sa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP---LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD---SAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred CcchhhhhcccccccccCCc---hhhhcccccceeeeccCCchhhhhhhhhhccCcc---cccccchhhHHHHHhhchHH
Confidence 47799999999999999999 9999999999999999999999999999999984 33356888899999999888
Q ss_pred HHHHHhhhhhcC
Q 047433 555 ALWVFGGARSKI 566 (614)
Q Consensus 555 a~~lF~~Ai~k~ 566 (614)
++.+++.+...+
T Consensus 201 aa~dl~~a~kld 212 (377)
T KOG1308|consen 201 AAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHhcc
Confidence 888888887665
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.57 E-value=0.0078 Score=61.34 Aligned_cols=84 Identities=13% Similarity=-0.069 Sum_probs=75.7
Q ss_pred CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433 457 PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS 536 (614)
Q Consensus 457 ~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~ 536 (614)
.+++++.++..||..|-.+|-+.-|--|++++|.+.|+ -+.++.-+|.-+...|+|+.|.+.|...++++|.++-+.
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 35778999999999999999999999999999999999 999999999999999999999999999999999877655
Q ss_pred hhcchHH
Q 047433 537 KRVKIPY 543 (614)
Q Consensus 537 ~k~kl~~ 543 (614)
-+..+..
T Consensus 137 lNRgi~~ 143 (297)
T COG4785 137 LNRGIAL 143 (297)
T ss_pred hccceee
Confidence 5555443
No 185
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.43 E-value=0.036 Score=63.53 Aligned_cols=104 Identities=15% Similarity=-0.091 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK 500 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K 500 (614)
+..+.+-.+|-.+...|+-++|...-..++..++.. .++|.-.|..+..-++|++||+.|+.|+.++|+ |..
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-----~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d---N~q 110 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-----HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD---NLQ 110 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhccCccc-----chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC---cHH
Confidence 355678889999999999999999999999999999 999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
.|.-++....++|+++-....=.+.+++.|..
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999998853
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.38 E-value=0.015 Score=66.10 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
..+...|-.+...|++++|...|++|++++| + ..+|..+|.++...|++++|+..+.+|+.++|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s-----~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-S-----WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3455667777889999999999999999999 5 789999999999999999999999999999999
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.034 Score=63.16 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
....++-.--.+.+.++|++|+ +.|+..+.. ......++-+|-|++++++.++|+.+++ .+++. ..+.
T Consensus 45 d~~a~~cKvValIq~~ky~~AL----k~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~---~~~l 112 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDAL----KLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRL---DDKL 112 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHH----HHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh---ccccc---chHH
Confidence 4455666666667777777776 234444421 1113444789999999999999999999 56666 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
+.-+|+.++.+|+|++|+..|+..++...+..|
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 999999999999999999999999888654333
No 188
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.32 E-value=0.012 Score=58.29 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhcCCC
Q 047433 438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-----------PDAAISDATRALCLSNP 494 (614)
Q Consensus 438 dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd-----------yeeAI~D~~~ALeLdP~ 494 (614)
-+++||..|++||.++|+. ..++.|.|.+|..++. |++|...+.+|...+|+
T Consensus 50 miedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4688999999999999999 9999999999998754 88899999999999998
No 189
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.02 E-value=0.16 Score=55.25 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=134.6
Q ss_pred hhhcccchhhHHHHHHHHHhhcccccCCCcchhhhhhHHHHhccChhHHHHHHHHHHHHhhchhhhhhccCCCcCcHHHH
Q 047433 289 LCYSKTGRKNIAECKQVIENLCNLSRSSDDWQYMGIDCLLFLLKDPDTRYKVIETAALFLIDLVELNSLLDRPKNLGEAI 368 (614)
Q Consensus 289 ~~~~~~~~~aia~~~~~i~~lc~~srssd~w~y~~idcll~Llkd~~try~v~dka~~aLvDLseL~~Lg~~~k~lGe~i 368 (614)
|=+++-|-+|+....++++.|-|.- =-..++||+.+..-|......++-.++..+.=..+.. +. +
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~-----~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~---ds-----~-- 80 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLM-----GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE---DS-----D-- 80 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH---HH-----H--
Confidence 3457778889999999888887766 3467788888766654444334333443322211111 10 0
Q ss_pred HHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433 369 TRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTE 448 (614)
Q Consensus 369 t~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~Ytk 448 (614)
-+.+.| -+-+..++.+.++.+.. ...+.. +.++.....+ .--...-..|+++...+.|+.+++.|+.
T Consensus 81 --~~~ea~------lnlar~~e~l~~f~kt~--~y~k~~-l~lpgt~~~~--~~gq~~l~~~~Ahlgls~fq~~Lesfe~ 147 (518)
T KOG1941|consen 81 --FLLEAY------LNLARSNEKLCEFHKTI--SYCKTC-LGLPGTRAGQ--LGGQVSLSMGNAHLGLSVFQKALESFEK 147 (518)
T ss_pred --HHHHHH------HHHHHHHHHHHHhhhHH--HHHHHH-hcCCCCCccc--ccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 000111 11122222333322211 111111 0121111100 0112455589999999999999999999
Q ss_pred HHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc----cHHHHHHHHHHHHHcCCHHHHHH
Q 047433 449 ALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS----HCKSLWRRSQAYDMKGLGRESLM 520 (614)
Q Consensus 449 AIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~----~~KAyyRRA~Al~~LG~yeEAL~ 520 (614)
|+++.... ..-+....+.-++..|-.+.||++|+-...+|.++-... .+ +.-++|+++.++..+|+.-+|.+
T Consensus 148 A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 148 ALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred HHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 99986543 223345678888999999999999999999999886541 11 23588999999999999999999
Q ss_pred HHHHHHHcCCCCCC
Q 047433 521 DCIMFINGCIRSET 534 (614)
Q Consensus 521 df~kALkl~P~~~D 534 (614)
.++++.++.-.+.|
T Consensus 228 ~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 228 CCEEAMKLALQHGD 241 (518)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999988655555
No 190
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.00 E-value=0.016 Score=43.55 Aligned_cols=41 Identities=24% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQ 470 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~ 470 (614)
.+...|..+...|++++|+..|+++|+.+|++ ..++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-----~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD-----PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-----HHHHHHhhh
Confidence 56788999999999999999999999999999 888888765
No 191
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.99 E-value=0.012 Score=41.16 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
++|+.+|.+|..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666666666666666666666666655
No 192
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.98 E-value=0.0095 Score=41.64 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.+|.++|.+|.++|++++|+..++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56888899999999999999999999988885
No 193
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.96 E-value=0.14 Score=61.34 Aligned_cols=104 Identities=14% Similarity=-0.061 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.++.....+..+....++++|......+-+..|.. .....|..||..|++-++...||.+++.|++.+|. .+.+
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~---~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~ 598 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF---ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNL 598 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH---HHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHH
Confidence 34456666667777778888887766665555542 33445666999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
|.-+|.+|...|.|.-|++.|.++..++|.
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 999999999999999999999999999984
No 194
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.95 E-value=1.4 Score=54.48 Aligned_cols=95 Identities=8% Similarity=-0.143 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCccHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGV--CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL--SNPPNSHCK 500 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel--~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL--dP~~~~~~K 500 (614)
.+....+.+.+.|++++|+..|.+..+. .|+ ...|+.+..+|.+.|++++|+..+++..+. .|+ ..
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd----~~ 755 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPT------VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN----TI 755 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC----HH
Confidence 4566666777777777777777766543 343 466777777777777777777777766543 343 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
.|.-+-.++...|++++|...+.+.++..
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 66666677777777777777777777654
No 195
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.85 E-value=0.93 Score=52.93 Aligned_cols=93 Identities=9% Similarity=-0.012 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR 505 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR 505 (614)
+....+.+.+.|++++|...|.+..+ | + ...|+.+..+|.+.|+.++|+..+++.++.... ++...|.-.
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d-----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--Pd~~T~~~l 432 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPR--K-N-----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--PNHVTFLAV 432 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCC--C-C-----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCHHHHHHH
Confidence 44555667777777777777776543 3 2 456777777777777777777777776653211 135667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 047433 506 SQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 506 A~Al~~LG~yeEAL~df~kALkl 528 (614)
-.++...|..++|...|+...+.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHh
Confidence 77777777777777777777654
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=95.82 E-value=0.071 Score=52.11 Aligned_cols=97 Identities=8% Similarity=-0.208 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcch
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKI 541 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl 541 (614)
....+-.|--++..|++++|...|+-...+||. +.+-++.+|.++..+++|++|+..|-.+..+.++++-|-.....
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 677777889999999999999999999999999 99999999999999999999999999999998866555433221
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 047433 542 PYYAARMISKHMNALWVFGGARS 564 (614)
Q Consensus 542 ~~y~~r~i~Kqmea~~lF~~Ai~ 564 (614)
- ..++++...+...|..++.
T Consensus 114 C---~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 C---QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred H---HHHhCCHHHHHHHHHHHHh
Confidence 1 2245666777778888876
No 197
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.81 E-value=0.015 Score=39.97 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
.|+|++|.++..+|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788888888888888888888888888875
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.80 E-value=0.017 Score=63.41 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC---CCCccH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSN---PPNSHC 499 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP---~~~~~~ 499 (614)
.-++-.+|..+++.|++...+..|..||+.-..+ -..+..+|+.++.+|+-+++|++|++.-+.-|.+.. +.....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeD-l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTED-LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH-HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 4467789999999999999999999999987654 455678899999999999999999986555443321 111256
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
|+--++|..+..+|.|++|+.++.+-|.+
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~ 124 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDF 124 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHH
Confidence 77888999999999999999998887755
No 199
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.17 Score=52.60 Aligned_cols=99 Identities=22% Similarity=0.221 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHH
Q 047433 385 NKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVL 464 (614)
Q Consensus 385 n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~l 464 (614)
....++++..+..+. -+|+ +-+++=++.......-+.+-..-+...|+|-++++.-++.|...|.+ ..+
T Consensus 198 ~~~YreAi~~l~~L~----lkEk--P~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n-----vKA 266 (329)
T KOG0545|consen 198 SSKYREAIICLRNLQ----LKEK--PGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN-----VKA 266 (329)
T ss_pred HHHHHHHHHHHHHHH----hccC--CCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch-----HHH
Confidence 445566676666665 4555 34444343333344456777888899999999999999999999999 999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 465 YSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
|+.||.++...-+..+|-.|+..+|+++|.
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999999999999999999999999998
No 200
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.77 E-value=1.2 Score=55.07 Aligned_cols=133 Identities=10% Similarity=-0.080 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCCCCccHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVC-PSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL--SNPPNSHCKS 501 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~-P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL--dP~~~~~~KA 501 (614)
.+......+.+.|++++|.+.+.+.++.. +.+ ...|+.+..+|.+.|++++|+..++...+. .|+ ...
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-----~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd----vvt 721 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-----TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT----VST 721 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHH
Confidence 56677778888999999999999888753 223 678899999999999999999999887653 444 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILS 568 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~ 568 (614)
|..+..+|...|++++|++.|++..+..-. +|...-..+- ......++...+...|..+......
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~-Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILL-VASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 888999999999999999999987764321 1221111111 1111223334556677777655533
No 201
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.032 Score=59.81 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHHHHHHHHHHHcC
Q 047433 436 LGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSLWRRSQAYDMKG 513 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAyyRRA~Al~~LG 513 (614)
.|++..=+...+ +|..+|. ..+++.+.-|---|.=|++-++|..|+..|+..|+-.-.+ ..+.-.|.+||.|.+.+|
T Consensus 55 ~gd~~~~~~~Lq-slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~ 133 (390)
T KOG0551|consen 55 EGDPNPDNVCLQ-SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG 133 (390)
T ss_pred CCCCCccHHHHH-HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH
Confidence 344433333333 4555543 2355678888888999999999999999999999875443 357889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCC
Q 047433 514 LGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 514 ~yeEAL~df~kALkl~P~~~D 534 (614)
+|..|+.|+.+++++.|.+-.
T Consensus 134 NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 134 NYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHHHHHHHHHhcCcchhh
Confidence 999999999999999996543
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.71 E-value=0.14 Score=56.50 Aligned_cols=86 Identities=16% Similarity=-0.056 Sum_probs=77.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y 515 (614)
.++++.|+..+.+..+.+|.. ..-+|.+++..++..+|++...++|+.+|. +...+.-.+..+...+++
T Consensus 182 t~~~~~ai~lle~L~~~~pev--------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV--------AVLLARVYLLMNEEVEAIRLLNEALKENPQ---DSELLNLQAEFLLSKKKY 250 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH--------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCCH
Confidence 467999999999999988753 334788999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC
Q 047433 516 RESLMDCIMFINGCIRS 532 (614)
Q Consensus 516 eEAL~df~kALkl~P~~ 532 (614)
+.|+...++++++.|..
T Consensus 251 ~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHHHHHHHHhCchh
Confidence 99999999999999953
No 203
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.67 E-value=0.83 Score=53.35 Aligned_cols=94 Identities=7% Similarity=-0.129 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGV--CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel--~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
..|......+.+.|+.++|++.|.+.++. .|+ ...|...-.++.+.|+.++|...++...+-.+- .++...
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-~p~~~~ 464 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN------HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-KPRAMH 464 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCccc
Confidence 36777788888888888888888887763 454 466777778888888888888888887653211 113567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIM 524 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~k 524 (614)
|.-+..+|...|++++|.+.+++
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHH
Confidence 77788888888888888877654
No 204
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.091 Score=56.97 Aligned_cols=53 Identities=32% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHH
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDAT 486 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~ 486 (614)
.|--+|..|+|++|+..|+-+.+.+.-. +.++.|+|-|++-+|.|.+|.+...
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~-----~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAP-----AELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCC-----cccchhHHHHHHHHHHHHHHHHHHh
Confidence 3677899999999999999888765444 6777788888777777666655433
No 205
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.018 Score=59.30 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+---+.+++.-++|..||+.|.+||.++|. .+.-|-+|+.+|+++.+++....|+++++++.|+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 334456677788999999999999999999 7777889999999999999999999999999884
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.54 E-value=0.12 Score=57.98 Aligned_cols=104 Identities=18% Similarity=0.089 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
-+--+..+|.-+...|+.++|++.|++++..... .++....++..++.|++-+.+|++|...+.+.++.+. +.++
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~----WSka 340 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK----WSKA 340 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc----cHHH
Confidence 3446788999999999999999999999964443 3666788999999999999999999999999998654 3555
Q ss_pred HH--HHHHHHHHcCCH-------HHHHHHHHHHHHcCC
Q 047433 502 LW--RRSQAYDMKGLG-------RESLMDCIMFINGCI 530 (614)
Q Consensus 502 yy--RRA~Al~~LG~y-------eEAL~df~kALkl~P 530 (614)
+| -.|.|+.++|+. ++|...|.++-.+..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 54 568899999999 888888888877754
No 207
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.40 E-value=0.43 Score=46.84 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSL 502 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAy 502 (614)
..+...|+.+.+.|++++|+..|+++.+.+.. .......+.+.-.+.+..++|..+.....+|-.+-... .+..+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 47889999999999999999999999998763 35567788899999999999999999999887654331 1223332
Q ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 503 W--RRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 503 y--RRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+ -.|.++...|+|.+|-..|..+...
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2 3455666778999888887766544
No 208
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.30 E-value=0.023 Score=36.47 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 464 LYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
++.++|.++..++++++|+..++++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555555666666666666666555555554
No 209
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.26 E-value=0.14 Score=54.02 Aligned_cols=96 Identities=8% Similarity=-0.139 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH--cC--CcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL--LR--EPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk--LG--dyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
-.-..+.+.++++.|...+...-+.+.+. ...++|.+++. .| .+.+|...|+......|. +++.+.
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~---t~~~ln 205 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDS-------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS---TPKLLN 205 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCH-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----SHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC---CHHHHH
Confidence 34456778999999999999888776654 45566665554 44 699999999998777777 899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
..|.++..+|+|++|...+.++++.+|+++
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 999999999999999999999999988543
No 210
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.24 E-value=0.19 Score=59.84 Aligned_cols=105 Identities=17% Similarity=0.000 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---ccHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---SHCKSL 502 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---~~~KAy 502 (614)
....|..++..|++++|...+.++++..|.........+.+++|.++...|++++|...+.+++.+..... ....++
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 34478888999999999999999999766542233456788999999999999999999999997644310 123577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
..+|.++...|++++|...+++++.+..
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999998743
No 211
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=1.1 Score=51.80 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
.+++.+...|+..+|..+++.|...+..-|.+ ....-+....|++.||+++.+.+.|...+..|=+.||. ++---+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~---~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ---SPLCQL 432 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc---cHHHHH
Confidence 47899999999999999999999999988775 22334778899999999999999999999999999999 777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl 528 (614)
...++...-|.-++|+....+....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 7778888889999999988877654
No 212
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.059 Score=57.31 Aligned_cols=96 Identities=15% Similarity=0.008 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCC-
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL----SNPPN- 496 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL----dP~~~- 496 (614)
.+....+.|-..|+.|+|++|+..|+.|++...-. +.+-+|.|.|+++.|+|..|++.....++- .|.-+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-----pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-----PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-----chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 56678899999999999999999999999998877 888899999999999999999998887753 33210
Q ss_pred ---------------------ccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433 497 ---------------------SHCKSLWRRSQAYDMKGLGRESLMDC 522 (614)
Q Consensus 497 ---------------------~~~KAyyRRA~Al~~LG~yeEAL~df 522 (614)
.-+.|+.-++.+++..|+++.|.+.+
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 12467777888999999999876643
No 213
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.45 Score=50.57 Aligned_cols=106 Identities=20% Similarity=0.149 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHH--------------------
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISD-------------------- 484 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D-------------------- 484 (614)
....++......|++.+|...+..++...|.+ ..+..-+|.||+..|+.+.|-..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-----~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPEN-----SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCccc-----chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34567788899999999999999999999998 88899999999999998664332
Q ss_pred --------------HHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhh
Q 047433 485 --------------ATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKR 538 (614)
Q Consensus 485 --------------~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k 538 (614)
..+.+.-||+ +..+-+.+|..+...|+.++|+..+-..++.+-+..|...+
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPD---DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 2233344788 89999999999999999999999999999987666665533
No 214
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.08 E-value=0.03 Score=62.34 Aligned_cols=68 Identities=18% Similarity=-0.052 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
+..+-|-|.-.++-++|+.|+..|++||+++|+ .+.-+-.|++++...++|..|+.|+.++++++|..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 445667788889999999999999999999999 88888899999999999999999999999998854
No 215
>PLN03077 Protein ECB2; Provisional
Probab=95.01 E-value=2.1 Score=51.33 Aligned_cols=97 Identities=8% Similarity=-0.158 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV--CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC 499 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel--~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~ 499 (614)
....|....+.+.+.|+.++|+..|++.++. .|+. ..|...-.++.+.|++++|...++...+..+- .++.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi-~P~~ 625 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSI-TPNL 625 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC-CCch
Confidence 3447888889999999999999999988874 5664 45666667788999999999999998743221 1147
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMF 525 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kA 525 (614)
..|..+..+|...|++++|.+.+++.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 89999999999999999999988774
No 216
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.79 E-value=0.05 Score=34.84 Aligned_cols=32 Identities=19% Similarity=0.017 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
.+++++|.++..+|++++|...|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999999998773
No 217
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.79 E-value=0.27 Score=58.46 Aligned_cols=104 Identities=12% Similarity=-0.086 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-----CccH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-----NSHC 499 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-----~~~~ 499 (614)
....|..+...|++++|...|.+++...... ........+.++|.+++..|++++|...+.+++.+-... ....
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3445555666666666666666666553321 111223455566666666666666666666666542110 0012
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
-.+..+|.++...|++++|...+++++...
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 234445666666666666666666665543
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.088 Score=57.10 Aligned_cols=86 Identities=12% Similarity=-0.087 Sum_probs=69.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM 511 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~ 511 (614)
.+....||..||....-.+.++... ....-.=.|.|++.+|+|++|+..|+-+..-+.. ..+...++|.+++.
T Consensus 31 dfls~rDytGAislLefk~~~~~EE----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~---~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREE----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDA---PAELGVNLACCKFY 103 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhh----hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCC---CcccchhHHHHHHH
Confidence 4556789999999998887654332 2344444689999999999999999999987666 78999999999999
Q ss_pred cCCHHHHHHHHHH
Q 047433 512 KGLGRESLMDCIM 524 (614)
Q Consensus 512 LG~yeEAL~df~k 524 (614)
+|.|.||...-.+
T Consensus 104 Lg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 104 LGQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999865443
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=0.56 Score=49.43 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
..-....|...++.||.+.|-..+++.-+.... +.-......+.|.+.+|+-.++|.+|...+++.+..||. ++.+
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~---~~~a 288 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR---NAVA 288 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC---chhh
Confidence 334667888899999998888888743322111 011223677889999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT 535 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~ 535 (614)
-.++|.|+..+|+..+|++..+.++...|...-.
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 9999999999999999999999999999975543
No 220
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.23 E-value=0.16 Score=55.22 Aligned_cols=78 Identities=14% Similarity=-0.022 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433 459 NERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN--SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTS 536 (614)
Q Consensus 459 ~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~--~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~ 536 (614)
....++|.|++..+.++.++.++++.++..+.+-.... .-..++.-+|.|+..++.++.+++.|+.|++..-...|+.
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~ 159 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM 159 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence 34678999999999999999999999999998865421 1236677799999999999999999999999876655654
No 221
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.20 E-value=0.064 Score=39.71 Aligned_cols=39 Identities=41% Similarity=0.512 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhh
Q 047433 125 EFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLAS 164 (614)
Q Consensus 125 ~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 164 (614)
+....-+++|+||+|+.||+ --.=.=|+.|+.||++|++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHhC
Confidence 44566789999999999999 4455558999999999974
No 222
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.13 E-value=0.072 Score=38.49 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433 465 YSNRAQCHLLLREPDAAISDATRAL 489 (614)
Q Consensus 465 ysNRA~~ylkLGdyeeAI~D~~~AL 489 (614)
|.|+|.+|.++|+|++|+..|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 223
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.13 E-value=0.17 Score=54.02 Aligned_cols=101 Identities=18% Similarity=0.056 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
+|......+....+.|+.+.|...|..|+.++|++ +.++...|+....-++.-+|-..|.+||.++|. |.+|
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~-----p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~---nseA 186 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN-----PQILIEMGQFREMHNEIVEADQCYVKALTISPG---NSEA 186 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-----HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC---chHH
Confidence 44455566777889999999999999999999999 999999999988889999999999999999999 9999
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCC
Q 047433 502 LWRRSQAYDMK----GLGRESLMDCIMFINGCI 530 (614)
Q Consensus 502 yyRRA~Al~~L----G~yeEAL~df~kALkl~P 530 (614)
+.+|+...--. .++-+++.+.+..+..-|
T Consensus 187 LvnR~RT~plV~~iD~r~l~svdskrd~~~~i~ 219 (472)
T KOG3824|consen 187 LVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQ 219 (472)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99998754322 223344444444444443
No 224
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.36 Score=51.53 Aligned_cols=105 Identities=13% Similarity=-0.058 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC--------- 490 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe--------- 490 (614)
++.-..+...|--++...+|..|..+|++.-.+.|.. .....--|+.+++-+.|.+|+........
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-----~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-----EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL 115 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence 3344456677777888888888888888887777776 66777778888888888888777654332
Q ss_pred -c------CCCC-------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 491 -L------SNPP-------------NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 491 -L------dP~~-------------~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
+ ..++ .-......+.|..+++-|+|++|++-|+.+++..
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 1 1000 0134556677777778888888888888888774
No 225
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.04 E-value=0.5 Score=47.61 Aligned_cols=100 Identities=16% Similarity=0.033 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.....+...+..|++++|+.....++....+ ....+.+-.++|.+.+.+|.+++|+.-.+..-.-+= ..-.--.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D--e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~el 164 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD--ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAEL 164 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHH
Confidence 4567788889999999999999999985443 356677888999999999999999987665432211 1223557
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 505 RSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 505 RA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
||-++..+|+-++|...|.++++..+
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHccC
Confidence 99999999999999999999999964
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.96 E-value=0.46 Score=43.91 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL 489 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL 489 (614)
...+...+..+...|++++|+..+++++.++|.+ -.+|..+-.+|..+|++.+|+..|.+..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-----E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYD-----EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3466777888889999999999999999999999 8999999999999999999999888764
No 227
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.92 E-value=1.1 Score=45.16 Aligned_cols=124 Identities=15% Similarity=-0.044 Sum_probs=89.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHH
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC-LSNPPNSHCKSLWRRSQAYD 510 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-LdP~~~~~~KAyyRRA~Al~ 510 (614)
..-++=|.+.++..-++.++..|+. .-...+|.+...+|++.+|...|.+++. +--. ....+.-++++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqf 135 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV------QNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQF 135 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHH
Confidence 3344456667777778888999974 5577889999999999999999999985 3344 5778899999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433 511 MKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK 565 (614)
Q Consensus 511 ~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k 565 (614)
.++++.+|...+++..+..|.-..|+-..-+. ....-.++--.+...|+-+++-
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a-R~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA-RTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCCchHHHH-HHHHhcCCchhHHHHHHHHHHh
Confidence 99999999999999999998765555222222 2222233333344455555543
No 228
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.83 E-value=0.35 Score=44.43 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=70.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHhcCCCCCc
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-----------PDAAISDATRALCLSNPPNS 497 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd-----------yeeAI~D~~~ALeLdP~~~~ 497 (614)
++..+|..|++-.|++.....|...+.+ .....++.--|.++.++.. .-.++..+.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~--~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~--- 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED--ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD--- 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC--CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh---
Confidence 4678999999999999999999998875 1112667777777776542 44689999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 498 HCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 498 ~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
.+..+|.+|.=+-....|++++.-.+++|..
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7666666666655555666666666666654
No 229
>PLN03077 Protein ECB2; Provisional
Probab=93.83 E-value=5.4 Score=47.83 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
..+.-....+.+.|++++|.+.+.+. .+.|+ ...|..+-.++..-|+.+.|....+++++++|+ +...|.
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~---~~~~y~ 695 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD------PAVWGALLNACRIHRHVELGELAAQHIFELDPN---SVGYYI 695 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CcchHH
Confidence 45777788888999999999988763 44555 455666656667788889998899999999999 888899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFIN 527 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALk 527 (614)
.++.+|...|++++|.+..+...+
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999887776654
No 230
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.73 E-value=0.18 Score=40.38 Aligned_cols=31 Identities=10% Similarity=-0.067 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
-+|.+|.+++.+|+|++|...++.+|+..|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3556666666666666666666666666663
No 231
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.62 E-value=0.26 Score=39.43 Aligned_cols=40 Identities=15% Similarity=-0.051 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR 505 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR 505 (614)
.+++.+|.+++++|+|.+|...++.+|+++|+ |..|.--+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~---N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD---NRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS----HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC---cHHHHHHH
Confidence 35778999999999999999999999999999 77665433
No 232
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.17 Score=52.97 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=68.6
Q ss_pred CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCh
Q 047433 457 PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETT 535 (614)
Q Consensus 457 ~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~ 535 (614)
.+........|.=..|+..++++.|..+..+.+.++|. .+.-+--||.+|..+|.+.-|++|+..+++.+|+.++.
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~---dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPE---DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC---ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34556778889999999999999999999999999999 88888999999999999999999999999999965543
No 233
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.57 E-value=0.9 Score=54.19 Aligned_cols=92 Identities=16% Similarity=0.016 Sum_probs=75.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM 511 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~ 511 (614)
.....++|..|+...++.++..|+. ..+..-.|..++++|++++|. -|-+++..-+.+ ....+--+-.+|..
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~-----~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~--D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNA-----LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGT--DDLTLQFLQNVYRD 89 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCC--chHHHHHHHHHHHH
Confidence 3455778899999999999999988 778888899999999999999 555565544431 56667777889999
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 047433 512 KGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 512 LG~yeEAL~df~kALkl~P~ 531 (614)
+|++++|+..|++++...|+
T Consensus 90 ~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HhhhhHHHHHHHHHHhhCCc
Confidence 99999999999999999885
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.49 E-value=0.075 Score=38.39 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
+|.++|.+|..+|+|++|+..|++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999776643
No 235
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.45 E-value=0.62 Score=51.14 Aligned_cols=92 Identities=18% Similarity=0.004 Sum_probs=55.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA 508 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A 508 (614)
.+..+...|++++|.+...++++..-+. .+. +=.-.++.+++..=++..++.++..|+ .+..++.+|+.
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~------~L~--~~~~~l~~~d~~~l~k~~e~~l~~h~~---~p~L~~tLG~L 337 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDP------RLC--RLIPRLRPGDPEPLIKAAEKWLKQHPE---DPLLLSTLGRL 337 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCh------hHH--HHHhhcCCCCchHHHHHHHHHHHhCCC---ChhHHHHHHHH
Confidence 3445556777777777777777654432 111 111123456666666666666666666 56666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Q 047433 509 YDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 509 l~~LG~yeEAL~df~kALkl~P~ 531 (614)
++..+.+.+|-..|+.+++..|.
T Consensus 338 ~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 338 ALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCC
Confidence 66666666666666666666653
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.30 E-value=0.12 Score=35.38 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 464 LYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 464 lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
++.++|.|+.++|++++|+..++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778888999999999999999998888886
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=3.2 Score=45.24 Aligned_cols=93 Identities=20% Similarity=0.130 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------------------------CcchhHHHHHHHHHHHHH
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSR---------------------------------PKNERMVLYSNRAQCHLL 474 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~---------------------------------~~~~~a~lysNRA~~ylk 474 (614)
..+-.+|..|++.+|...+.+.|+-.|.+ ...+..-+.--.|.++..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34445566666666666666666655553 012234455567899999
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047433 475 LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCI 523 (614)
Q Consensus 475 LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~ 523 (614)
.|-|++|...+++|+++||. ..-|..-++.++.+.|+++|+++...
T Consensus 188 ~g~y~dAEk~A~ralqiN~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRF---DCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hccchhHHHHHHhhccCCCc---chHHHHHHHHHHHhcchhhhHHHHHH
Confidence 99999999999999999999 66666777777777777777766443
No 238
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.18 E-value=0.26 Score=42.69 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=65.1
Q ss_pred CCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHH
Q 047433 76 LFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVA 155 (614)
Q Consensus 76 ~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~ 155 (614)
||.+.|++.-...++.++ |..+-..+...+++.+-+.++-....++.|+||.|+++|.-. ..-=++.|
T Consensus 2 ~~~~~~~i~~l~~~l~~~-----------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a 69 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-----------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAA 69 (120)
T ss_pred hHHHcCChHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHH
Confidence 456677777777776543 357778999999999998888888889999999999999975 45557789
Q ss_pred HHHhhhhhhcccc
Q 047433 156 VRALGHLASYDRT 168 (614)
Q Consensus 156 ~r~l~h~a~~~~~ 168 (614)
+.+|+.|+....+
T Consensus 70 ~~~L~~l~~~~~~ 82 (120)
T cd00020 70 LWALRNLAAGPED 82 (120)
T ss_pred HHHHHHHccCcHH
Confidence 9999999887653
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=0.21 Score=52.56 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP 495 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~ 495 (614)
....++.+-.+..+++|.+|...|++.+..+|.+ +.+-+|.|.|++-+|+..+|++..+.++..+|..
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~-----~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN-----AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCc-----hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3456777777888999999999999999999999 9999999999999999999999999999999983
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.11 E-value=1.7 Score=49.31 Aligned_cols=109 Identities=14% Similarity=-0.108 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc--------------------chhHHHHHHHHHHHH
Q 047433 414 EKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK--------------------NERMVLYSNRAQCHL 473 (614)
Q Consensus 414 eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~--------------------~~~a~lysNRA~~yl 473 (614)
+.++..+.-+.++.-.+.+. ..-..+|...|.+|++......+ ....-+...+|.|.-
T Consensus 193 eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 193 EALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 44444455555555555442 34478999999999987544210 112445567899999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433 474 LLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMF 525 (614)
Q Consensus 474 kLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA 525 (614)
++|+.++||+.++..++.+|.. .+...++.+-.++..++.|.++-..+.+.
T Consensus 271 klGr~~EAIk~~rdLlke~p~~-~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNL-DNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCcc-chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 9999999999999999988751 15678999999999999999776665553
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.89 E-value=4 Score=42.55 Aligned_cols=105 Identities=19% Similarity=0.045 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------CCcchhHHHHHHHHHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-----------------------------RPKNERMVLYSNRAQCHL 473 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-----------------------------~~~~~~a~lysNRA~~yl 473 (614)
+....+.+.-++..|+..+|+......++.... ......+.++.-+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 335566777788888889999998888872111 112455667777777777
Q ss_pred Hc------CCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHcCC
Q 047433 474 LL------REPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG-----------------RESLMDCIMFINGCI 530 (614)
Q Consensus 474 kL------GdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y-----------------eEAL~df~kALkl~P 530 (614)
.+ +.+++++..++.|++++|. +.++|+..|..+..+-+. ..|+..|-+++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPS---WEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS 340 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChh---HHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence 77 8889999999999999999 999999999988765322 236777777777765
No 242
>PRK10941 hypothetical protein; Provisional
Probab=92.85 E-value=1.6 Score=45.99 Aligned_cols=78 Identities=18% Similarity=0.010 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
..-+.+.-..+.+.++|+.|+..-...+.+.|++ +.-+--||.+|.++|.+..|+.|++.-++..|+ .+.+-
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-----p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---dp~a~ 252 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPED-----PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---DPISE 252 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC---chhHH
Confidence 4445666678889999999999999999999999 888999999999999999999999999999999 66665
Q ss_pred HHHHHH
Q 047433 503 WRRSQA 508 (614)
Q Consensus 503 yRRA~A 508 (614)
.-+.++
T Consensus 253 ~ik~ql 258 (269)
T PRK10941 253 MIRAQI 258 (269)
T ss_pred HHHHHH
Confidence 544444
No 243
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.76 E-value=0.64 Score=40.41 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL 491 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL 491 (614)
.+....++|-.+|.+.+.++|+..++++++..++ ++++..++--++.+|...|+|.+++....+-+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~--~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD--REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999886 3567888889999999999999999987776654
No 244
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.48 E-value=6 Score=41.89 Aligned_cols=96 Identities=20% Similarity=0.078 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
.|..|...+.. .+++.+|.-.|++--+..|.. +.+.+-.|.|++.+|+|++|......||.-+++ ++..
T Consensus 175 LA~awv~la~g---gek~qdAfyifeE~s~k~~~T-----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpet 243 (299)
T KOG3081|consen 175 LAQAWVKLATG---GEKIQDAFYIFEELSEKTPPT-----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPET 243 (299)
T ss_pred HHHHHHHHhcc---chhhhhHHHHHHHHhcccCCC-----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHH
Confidence 44455443332 446899999999988866666 889999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+.+.-.+-..+|.-.++...+..-++.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999999998877666655
No 245
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.09 E-value=0.2 Score=51.70 Aligned_cols=59 Identities=25% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP 495 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~ 495 (614)
.+++.+|++.|.+.|.+|+++.|.. ..-|...+....+.|+++.|.+.+++.+++||.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w-----~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW-----AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh-----hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4567899999999999999999999 9999999999999999999999999999999983
No 246
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.81 E-value=0.52 Score=41.42 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhc
Q 047433 480 AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRV 539 (614)
Q Consensus 480 eAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~ 539 (614)
..+..++++++-+|+ +..+.|.+|.++...|++++|+.-+..+++.+++..+...+.
T Consensus 6 ~~~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~ 62 (90)
T PF14561_consen 6 PDIAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARK 62 (90)
T ss_dssp HHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHH
T ss_pred ccHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHH
Confidence 346778899999999 999999999999999999999999999999998876655443
No 247
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.81 E-value=0.64 Score=40.67 Aligned_cols=35 Identities=14% Similarity=-0.064 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
-+...+|..+...|++++|+..+++++++.....|
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 44555555555555555555555555555543333
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.42 E-value=0.52 Score=54.05 Aligned_cols=91 Identities=15% Similarity=0.012 Sum_probs=81.9
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC
Q 047433 435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL 514 (614)
Q Consensus 435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ 514 (614)
..|+-..|+.+...|+...|.. .-+-..|+|+..++-|-..+|-....++|.++.. .+-.+|-.|.++..+.+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s---epl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQ----QDVPLVNLANLLIHYGLHLDATKLLLQALAINSS---EPLTFLSLGNAYLALKN 691 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhh----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---CchHHHhcchhHHHHhh
Confidence 4678889999999999999874 1456789999999999999999999999999988 77889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 047433 515 GRESLMDCIMFINGCIRS 532 (614)
Q Consensus 515 yeEAL~df~kALkl~P~~ 532 (614)
.+.|++.|+.|+++.|+.
T Consensus 692 i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKC 709 (886)
T ss_pred hHHHHHHHHHHHhcCCCC
Confidence 999999999999998853
No 249
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=91.39 E-value=3.5 Score=45.45 Aligned_cols=89 Identities=19% Similarity=0.079 Sum_probs=46.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM 511 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~ 511 (614)
.+-+.||++.|=.+..++-+..+++ -...+.-|+...+..|++..|....+++++..|. ++..+--..++|..
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~----~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~ 199 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDD----TLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIR 199 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCc----hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHH
Confidence 3334444444444444444442221 1333444555555666666666666666666666 55555555556666
Q ss_pred cCCHHHHHHHHHHHHH
Q 047433 512 KGLGRESLMDCIMFIN 527 (614)
Q Consensus 512 LG~yeEAL~df~kALk 527 (614)
+|++.+.+....+.-+
T Consensus 200 ~g~~~~ll~~l~~L~k 215 (400)
T COG3071 200 LGAWQALLAILPKLRK 215 (400)
T ss_pred hccHHHHHHHHHHHHH
Confidence 6666655554444433
No 250
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.31 E-value=2 Score=37.77 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc--HHHHHHHHHHHHHcCCHHHHH
Q 047433 442 AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH--CKSLWRRSQAYDMKGLGRESL 519 (614)
Q Consensus 442 AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~--~KAyyRRA~Al~~LG~yeEAL 519 (614)
.+....++++.+|++ ..+...+|..++..|++++|+.-+-.+++-+++ + ..+--.+-.++..+|.-+.-.
T Consensus 7 ~~~al~~~~a~~P~D-----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~---~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 7 DIAALEAALAANPDD-----LDARYALADALLAAGDYEEALDQLLELVRRDRD---YEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHHHSTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT---CCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred cHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---ccccHHHHHHHHHHHHcCCCChHH
Confidence 467788999999999 999999999999999999999999999999988 4 344444445555666554444
Q ss_pred HHHHH
Q 047433 520 MDCIM 524 (614)
Q Consensus 520 ~df~k 524 (614)
..|++
T Consensus 79 ~~~RR 83 (90)
T PF14561_consen 79 SEYRR 83 (90)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 251
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.28 E-value=0.29 Score=50.60 Aligned_cols=59 Identities=12% Similarity=-0.035 Sum_probs=55.3
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 471 CHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 471 ~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
...+.++.+.|...+.+|+++-|. +...|+|.|.-..+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 455779999999999999999999 99999999999999999999999999999999854
No 252
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=5.2 Score=45.38 Aligned_cols=109 Identities=14% Similarity=0.023 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 415 KVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 415 el~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.+..+.-....|..-|.---.++++..|-..|.+||..+..+ ..+|..-+.+-++.+....|-...++|+.+-|.
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-----itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-----ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-----chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 344444456677777888888899999999999999999888 999999999999999999999999999999998
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 495 PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 495 ~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
--+.||.--..-..+|+...|...|.+-++..|+
T Consensus 140 ---VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 140 ---VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD 173 (677)
T ss_pred ---HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence 7788888888888999999999999999999884
No 253
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.77 E-value=17 Score=45.90 Aligned_cols=133 Identities=14% Similarity=-0.071 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR 505 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR 505 (614)
+......|-+.+++++|.+.|++-++---+. ...|...+..+++..+-++|-....+||+--|. .-|.+..-.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHHH
Confidence 4455667778888999999999999877655 788999999999999999999999999998886 2367778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHH--HHHHHHHHHhhhhhcCCCC
Q 047433 506 SQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMIS--KHMNALWVFGGARSKILSS 569 (614)
Q Consensus 506 A~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~--Kqmea~~lF~~Ai~k~~~~ 569 (614)
|+.-++.|+.+.+...|+-.+.-.|+..|- +.-|..+.++ .+--.+.+|++++.+..++
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDl-----W~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDL-----WSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCccchhH-----HHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999998854442 2223333333 1223346788888776443
No 254
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=90.43 E-value=0.4 Score=34.39 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=31.1
Q ss_pred HHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhh
Q 047433 126 FAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLAS 164 (614)
Q Consensus 126 ~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~ 164 (614)
-+..-++.|+||+|++||.. -..--|+.|+.||+.|++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence 44556799999999999983 467779999999998863
No 255
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.03 E-value=0.53 Score=33.60 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCL 491 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeL 491 (614)
+.+++|+|.+|..+|++++|+..+.+++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345666666666667777666666666654
No 256
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.94 E-value=1.4 Score=38.49 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=53.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcc----hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKN----ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~----~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
...+.|||.+|++.+.+..+........ ....+..|+|..+...|++++|+..+++|+++-..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999998765322 24678899999999999999999999999988654
No 257
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=4.3 Score=42.95 Aligned_cols=95 Identities=11% Similarity=-0.059 Sum_probs=71.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433 430 AKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL----REPDAAISDATRALCLSNPPNSHCKSLWRR 505 (614)
Q Consensus 430 GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL----GdyeeAI~D~~~ALeLdP~~~~~~KAyyRR 505 (614)
-+.+.+..+++-|.....+..+++.+ ..++.+|++++++ +++.+|.-.|..--+.-|. .+..+...
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided-------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~---T~~llnG~ 213 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDED-------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP---TPLLLNGQ 213 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchH-------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC---ChHHHccH
Confidence 34455566666666666666666553 3456677777765 4688888888888775555 68999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 506 SQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 506 A~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
+.|+..+|+|+||...++.+|..++++++
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 99999999999999999999999875443
No 258
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.58 E-value=30 Score=36.36 Aligned_cols=173 Identities=13% Similarity=-0.007 Sum_probs=100.9
Q ss_pred HHHHhhchhhhh-hccCCCcCcHHHHHHHHHHhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 047433 344 AALFLIDLVELN-SLLDRPKNLGEAITRALLLDYKLTEQKFKNKKVQKALEEIWELKVERRKREKMMMMSEEKVEEMRVL 422 (614)
Q Consensus 344 a~~aLvDLseL~-~Lg~~~k~lGe~it~aLl~dy~~~~~~p~n~e~~~aL~el~~lkvEr~erEk~~~ls~eel~~~~~~ 422 (614)
++.+.-..+++. ..+++ +..+..++.+- ..|+++ +..++-+-|....++.. +.-+-. ..
T Consensus 53 AG~aflkaA~~h~k~~sk-hDaat~YveA~-~cykk~----~~~eAv~cL~~aieIyt-~~Grf~-------------~a 112 (288)
T KOG1586|consen 53 AGDAFLKAADLHLKAGSK-HDAATTYVEAA-NCYKKV----DPEEAVNCLEKAIEIYT-DMGRFT-------------MA 112 (288)
T ss_pred HHHHHHHHHHHHHhcCCc-hhHHHHHHHHH-HHhhcc----ChHHHHHHHHHHHHHHH-hhhHHH-------------HH
Confidence 444444444443 33555 66667766665 355553 22223333444444331 111111 02
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCc-chhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Cc
Q 047433 423 VGLIKQEAKHLFWL-GEIEEAAMKYTEALGVCPSRPK-NERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NS 497 (614)
Q Consensus 423 A~~lK~~GN~lFk~-GdyeeAI~~YtkAIel~P~~~~-~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~ 497 (614)
|.-+...|..+-.. .+++.||..|.+|-+.-..+.. ..--.++...|+---.+++|.+||..|.++....-+. ..
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 33344444444333 6899999999999887544310 0111233444444456899999999999987654442 23
Q ss_pred cHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChH
Q 047433 498 HCKSLW-RRSQAYDMKGLGRESLMDCIMFINGCIRSETTS 536 (614)
Q Consensus 498 ~~KAyy-RRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~ 536 (614)
.+|.|+ +.|.|+....+.-.+...+++..+++|.-.|..
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 566665 557788888999999999999999999766653
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=89.40 E-value=1.9 Score=48.64 Aligned_cols=91 Identities=14% Similarity=0.017 Sum_probs=78.3
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHHHHHHHHHHHcC
Q 047433 435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSLWRRSQAYDMKG 513 (614)
Q Consensus 435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAyyRRA~Al~~LG 513 (614)
...+.+.|.+......+.-|+. +..+...|..+...|+.++|+..+++++.....- ..+.-.+|.+|-++..++
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s-----~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNS-----ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence 3556788999999999999999 9999999999999999999999999999544331 124568999999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 047433 514 LGRESLMDCIMFINGCI 530 (614)
Q Consensus 514 ~yeEAL~df~kALkl~P 530 (614)
+|++|...|.+..+.+.
T Consensus 320 ~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESK 336 (468)
T ss_pred hHHHHHHHHHHHHhccc
Confidence 99999999999998743
No 260
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.73 E-value=36 Score=39.06 Aligned_cols=86 Identities=7% Similarity=-0.167 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCC-HHHHH
Q 047433 441 EAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGL-GRESL 519 (614)
Q Consensus 441 eAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~-yeEAL 519 (614)
.-+..|..|+...+.+ ..+|++-..--.+.+.|.+--..|.++|..+|+ ++..|.-.|.=.+..+. .+.|.
T Consensus 89 rIv~lyr~at~rf~~D-----~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~saR 160 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD-----VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESAR 160 (568)
T ss_pred HHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHHH
Confidence 4467799999998988 899998877777777799999999999999999 99999988888888776 88899
Q ss_pred HHHHHHHHcCCCCCC
Q 047433 520 MDCIMFINGCIRSET 534 (614)
Q Consensus 520 ~df~kALkl~P~~~D 534 (614)
+.|.++|..+|+++.
T Consensus 161 alflrgLR~npdsp~ 175 (568)
T KOG2396|consen 161 ALFLRGLRFNPDSPK 175 (568)
T ss_pred HHHHHHhhcCCCChH
Confidence 999999999996543
No 261
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.63 E-value=5.3 Score=40.52 Aligned_cols=99 Identities=15% Similarity=-0.058 Sum_probs=72.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC--CCcchhHHHHHHHHHHHHHcCC-------cHHHHHHHHHHHhcCCC--CC-ccH
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPS--RPKNERMVLYSNRAQCHLLLRE-------PDAAISDATRALCLSNP--PN-SHC 499 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~--~~~~~~a~lysNRA~~ylkLGd-------yeeAI~D~~~ALeLdP~--~~-~~~ 499 (614)
.+-....+++|++.|.-||-..-. ......+.++...|-.|-.+|+ +..|+..+.+|++-... .. ...
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 444456789999999988864321 1123567888889999999998 44566666666654432 11 146
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
...|-.|.....+|++++|+..|.+++...-
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999998843
No 262
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=88.18 E-value=2 Score=46.29 Aligned_cols=73 Identities=14% Similarity=-0.043 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~ 537 (614)
+.+-.|.|.-..+.|+.++|...+..|+.++|. ++.++.+.|+...+-.+.-+|-.+|-+|+.++|.+..+-+
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~---~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPT---NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC---CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 445556666677889999999999999999999 9999999999999999999999999999999998766544
No 263
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.07 E-value=1.4 Score=49.87 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCC--Ccc-hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEA-LGVCPSR--PKN-ERMVLYSNRAQCHLLLREPDAAISDATRALC------- 490 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkA-Iel~P~~--~~~-~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe------- 490 (614)
.+..+..+.+..|-.|+|..|....... |.-.|.. ..+ ....+++|+|-+++++|.|..++..|.+||+
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 5567778889999999999999876532 2222321 111 2356779999999999999999999999996
Q ss_pred --cCCC------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 491 --LSNP------PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 491 --LdP~------~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
+.|. .+.....+|+.|..|...|+.-+|.++|.++.+..
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 2222 12367899999999999999999999999999874
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.67 E-value=29 Score=39.77 Aligned_cols=100 Identities=12% Similarity=0.013 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-CCCCccHHHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS-NPPNSHCKSLWR 504 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd-P~~~~~~KAyyR 504 (614)
-...|..+.+.|+.++||..|.+.++..|.. ....++.|+..|++.++.|.++-....+==++. |+ +..-.|.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk---SAti~YT 335 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALLELQAYADVQALLAKYDDISLPK---SATICYT 335 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc---hHHHHHH
Confidence 4557888899999999999999999888752 236799999999999999998877666642221 33 3444444
Q ss_pred HHHHHHH-cCC---------------HHHHHHHHHHHHHcCCC
Q 047433 505 RSQAYDM-KGL---------------GRESLMDCIMFINGCIR 531 (614)
Q Consensus 505 RA~Al~~-LG~---------------yeEAL~df~kALkl~P~ 531 (614)
.|..... .++ -..|++.+.+|++.+|.
T Consensus 336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 4332211 111 23477889999999874
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.33 E-value=6.4 Score=37.85 Aligned_cols=86 Identities=10% Similarity=-0.096 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHcC---CcHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433 462 MVLYSNRAQCHLLLR---EPDAAISDATRALC-LSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537 (614)
Q Consensus 462 a~lysNRA~~ylkLG---dyeeAI~D~~~ALe-LdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~ 537 (614)
.....|.|-++.+.. +..+.|..++..++ -+|. ....-.|.+|..++.+++|+.|+..++.+++..|++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~--~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~- 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE--RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL- 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc--cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH-
Confidence 566788888888765 45667888888886 3443 2456677799999999999999999999999988543322
Q ss_pred hcchHHHHHHHHHHHHHHH
Q 047433 538 RVKIPYYAARMISKHMNAL 556 (614)
Q Consensus 538 k~kl~~y~~r~i~Kqmea~ 556 (614)
-..+++.+.|.+.
T Consensus 109 ------~Lk~~ied~itke 121 (149)
T KOG3364|consen 109 ------ELKETIEDKITKE 121 (149)
T ss_pred ------HHHHHHHHHHhhc
Confidence 2344566666554
No 266
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=86.33 E-value=23 Score=44.97 Aligned_cols=97 Identities=8% Similarity=-0.163 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR 505 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR 505 (614)
|...-|-...-|.-+.-...|.+|.+.|.. ...|..++-.|.+-+.+++|.+.++.-++---+ ..+.|.+.
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd~------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---~~~vW~~y 1570 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCDA------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---TRKVWIMY 1570 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---hhhHHHHH
Confidence 333333333346667778889999999865 578999999999999999999999999988777 78999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 506 SQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 506 A~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
|..+....+-++|-.-+.+|++.-|.
T Consensus 1571 ~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1571 ADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99999999999999999999999985
No 267
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.19 E-value=76 Score=36.26 Aligned_cols=52 Identities=6% Similarity=-0.197 Sum_probs=46.7
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433 469 AQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIM 524 (614)
Q Consensus 469 A~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~k 524 (614)
|.-++..|+|.+|+..+....+++|. +.+|--+|.+++...+|+||...+..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS----~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPS----PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 55567899999999999999999997 89999999999999999999987553
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.87 E-value=53 Score=34.18 Aligned_cols=109 Identities=16% Similarity=-0.014 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc--CCC-----
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL--SNP----- 494 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL--dP~----- 494 (614)
.+..+...+..+.+.|.++.|.....++....+.. ....+.+..-.|..+-..|+..+|+......+.- ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~-~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS-ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc-cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 55678889999999999999999999999876432 2224667777888999999999999998888871 100
Q ss_pred ------------------------CCccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCC
Q 047433 495 ------------------------PNSHCKSLWRRSQAYDMK------GLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 495 ------------------------~~~~~KAyyRRA~Al~~L------G~yeEAL~df~kALkl~P~ 531 (614)
.....++++.+|.-...+ +..++++..|+++++++|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 012457888888888888 9999999999999999873
No 269
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.76 E-value=2.1 Score=30.38 Aligned_cols=31 Identities=26% Similarity=0.168 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVC 453 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~ 453 (614)
+..+.+.|+.++..|+|++|+..+.+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999999874
No 270
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=84.50 E-value=15 Score=38.37 Aligned_cols=99 Identities=11% Similarity=-0.086 Sum_probs=77.9
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccH--H-
Q 047433 425 LIKQEAKHLFW-LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHC--K- 500 (614)
Q Consensus 425 ~lK~~GN~lFk-~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~--K- 500 (614)
.+..-|.--+. .++.+.|...|..+++..|.+ ..++..-..-++++++.+.|-..+++++..-|. .. +
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~---~~~~~~ 108 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-----PDFWLEYLDFLIKLNDINNARALFERAISSLPK---EKQSKK 108 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC---HHHCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc---hhHHHH
Confidence 45566666666 667777999999999999998 888998899999999999999999999988776 33 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
.|-+-..--...|+.+...+..+++.+..|.
T Consensus 109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 109 IWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 4445566666789999999999999999885
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.47 E-value=12 Score=39.05 Aligned_cols=106 Identities=15% Similarity=-0.011 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC----C-----CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 047433 421 VLVGLIKQEAKHLFWLG-EIEEAAMKYTEALGVCPS----R-----PKNERMVLYSNRAQCHLLLREPDAAISDATRALC 490 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~----~-----~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe 490 (614)
..+..+.+-|..+++.+ +|++|+...++|+++.+. . ..+.+...+..++.+|+..+.++...+ |..+++
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~ 111 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence 57889999999999999 999999999999999422 1 235788899999999999998765444 555544
Q ss_pred c----CCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 491 L----SNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 491 L----dP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
. .|+ .+..++-.=.++...++.+++...+.+.+...+
T Consensus 112 ~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 112 LLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3 355 566665555555558888988888888887643
No 272
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=83.68 E-value=14 Score=44.71 Aligned_cols=98 Identities=16% Similarity=0.013 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW 503 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy 503 (614)
-+..-+|-.+++.|++++|....+.--..-+++ -..+.-.-.||..++++++|...|.+++.-+|. .+..+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~----eell~ 114 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-----DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS----EELLY 114 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc----HHHHH
Confidence 345567888999999999995554333334444 555666778999999999999999999999998 56666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 504 RRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 504 RRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
..-.+|..-+.|.+--+.--+..+..|
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~p 141 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFP 141 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 677778777777654444444444444
No 273
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=83.10 E-value=7.5 Score=40.64 Aligned_cols=98 Identities=12% Similarity=-0.093 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL-LREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk-LGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
|....+..-+.+..+.|-..|.+|++..+.. ..+|..-|..-+. .++.+.|...++.+++.-|. +...+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~-----~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~~~~~ 75 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCT-----YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 3344444444555888999999998654444 6778877888666 56666799999999999999 8888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 505 RSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 505 RA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
-..-+..+++.+.|...|++++...|.
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 888899999999999999999998763
No 274
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=82.88 E-value=38 Score=37.98 Aligned_cols=144 Identities=17% Similarity=0.049 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHH--HHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCH--LLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~y--lkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
.+...+....-.|+|++|-..|+--+. +|.. .+.--||.-+ ..+|+++.|+++..+|-+.-|. -.-+.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt------RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~---l~WA~ 191 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD-DPET------RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ---LPWAA 191 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH------HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC---CchHH
Confidence 455667777889999999999986655 6652 3344444333 3689999999999999999999 55555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCcCCcc
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSKILSSPVNNVQESYGENK 582 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k~~~~~~~~~~e~~~~~~ 582 (614)
.-.=.....-|+++.|++..+.......-.++. -++..+..+-.++.+.-...
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~--------------aeR~rAvLLtAkA~s~ldad------------- 244 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDV--------------AERSRAVLLTAKAMSLLDAD------------- 244 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh--------------HHHHHHHHHHHHHHHHhcCC-------------
Confidence 545567788999999999887766542211111 01111112222333222111
Q ss_pred cchhhhHHHHHHHHHHhcccccCCcc
Q 047433 583 SGIEEQRYCDMIRTMMEKKNLISGKL 608 (614)
Q Consensus 583 ~g~~eQ~~dD~iral~~~~~~~~g~~ 608 (614)
..++.++..++.+++|+|.|+-.
T Consensus 245 ---p~~Ar~~A~~a~KL~pdlvPaav 267 (531)
T COG3898 245 ---PASARDDALEANKLAPDLVPAAV 267 (531)
T ss_pred ---hHHHHHHHHHHhhcCCccchHHH
Confidence 45788999999999999988754
No 275
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.82 E-value=8.3 Score=40.33 Aligned_cols=106 Identities=14% Similarity=-0.007 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc-chhHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhcCCCC---CccHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK-NERMVLYSNRAQCHLL-LREPDAAISDATRALCLSNPP---NSHCK 500 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~-~~~a~lysNRA~~ylk-LGdyeeAI~D~~~ALeLdP~~---~~~~K 500 (614)
-...+...|+.++.++|+....++|++-.+..+ ..-+..+.-.|..|-. +.++++||..|.+|-+.-... ...-|
T Consensus 76 ~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 76 TYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 334455567888999999999999998765310 0112234445555554 589999999999998654321 12447
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
.+...|+--..+++|.+|+.-|++.....-+
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888888999999999999999887654
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.16 E-value=10 Score=37.20 Aligned_cols=85 Identities=9% Similarity=-0.053 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433 458 KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK 537 (614)
Q Consensus 458 ~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~ 537 (614)
++..-.++..+|.-|.+.|++++|++.|.++.+-..........+++.-.+....|++......+.++-.+.....|.+.
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 34456789999999999999999999999988766543335678888899999999999999999999888655445444
Q ss_pred hcchH
Q 047433 538 RVKIP 542 (614)
Q Consensus 538 k~kl~ 542 (614)
+.++.
T Consensus 112 ~nrlk 116 (177)
T PF10602_consen 112 RNRLK 116 (177)
T ss_pred HHHHH
Confidence 44443
No 277
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.03 E-value=3.9 Score=47.31 Aligned_cols=92 Identities=15% Similarity=-0.013 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y 515 (614)
+|+..+|+.+|..|+-..|.. ..-.++.-+|.++.+.|.-.+|--....|+.-.|. .+.-+|-+|+++.++|+|
T Consensus 226 ~G~~~~A~~Ca~~a~hf~~~h---~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~---~t~n~y~l~~i~aml~~~ 299 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHFSSRH---NKDIALLSLATVLHRAGFSADAAVILHAALDDADF---FTSNYYTLGNIYAMLGEY 299 (886)
T ss_pred cCChhhhhHHHHHHhhhCCcc---cccchhhhHHHHHHHcccccchhheeehhccCCcc---ccccceeHHHHHHHHhhh
Confidence 678899999999999998763 23567778899999999999998888899988888 677799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 047433 516 RESLMDCIMFINGCIRSE 533 (614)
Q Consensus 516 eEAL~df~kALkl~P~~~ 533 (614)
..++..|..+.+..|...
T Consensus 300 N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 300 NHSVLCYDHALQARPGFE 317 (886)
T ss_pred hhhhhhhhhhhccCcchh
Confidence 999999999999988643
No 278
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.34 E-value=15 Score=35.36 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHh-hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 438 EIEEAAMKYTEALG-VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 438 dyeeAI~~YtkAIe-l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
+..+.|..++..++ -.|. .+-.+.+-+|..+.++|+|+.++..++..|+.+|+ |..|.--
T Consensus 50 dv~~GI~iLe~l~~~~~~~----~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~---n~Qa~~L 110 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPE----RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN---NRQALEL 110 (149)
T ss_pred HHHHhHHHHHHHhhhcCcc----cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC---cHHHHHH
Confidence 45778999998887 3333 34677788999999999999999999999999999 7766543
No 279
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.12 E-value=45 Score=35.59 Aligned_cols=157 Identities=9% Similarity=0.022 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCH
Q 047433 437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLG 515 (614)
Q Consensus 437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~y 515 (614)
..-..|+..-+.+|.++|.+ -..|.-|=.++-.++ +..+-+...+..++-+|. |...|..|-.+...+|++
T Consensus 57 E~S~RAl~LT~d~i~lNpAn-----YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK---NYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPAN-----YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK---NYQVWHHRRVIVELLGDP 128 (318)
T ss_pred ccCHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc---chhHHHHHHHHHHHhcCc
Confidence 34567888888899999988 788888888887765 566777888888888899 899998888888899988
Q ss_pred H-HHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHh-hhhhcCCCCCCCCccC------CcCCcccchhh
Q 047433 516 R-ESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFG-GARSKILSSPVNNVQE------SYGENKSGIEE 587 (614)
Q Consensus 516 e-EAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~-~Ai~k~~~~~~~~~~e------~~~~~~~g~~e 587 (614)
. .-+...+.++..+.+ +-.+-. ...++.|..+. .+....|. +.++.+.-.-...++. ..+-.....-+
T Consensus 129 s~rELef~~~~l~~DaK--NYHaWs-hRqW~~r~F~~-~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le 204 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDAK--NYHAWS-HRQWVLRFFKD-YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELE 204 (318)
T ss_pred ccchHHHHHHHHhcccc--chhhhH-HHHHHHHHHhh-HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHH
Confidence 8 777778888876332 111111 11122222222 22222222 2333331111111111 11222223445
Q ss_pred hHHHHHHHHHHhcccccC
Q 047433 588 QRYCDMIRTMMEKKNLIS 605 (614)
Q Consensus 588 Q~~dD~iral~~~~~~~~ 605 (614)
.++..++.+|...|+..|
T Consensus 205 ~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 205 RELNYTKDKILLVPNNES 222 (318)
T ss_pred HHHHHHHHHHHhCCCCcc
Confidence 677888888888888765
No 280
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.83 E-value=2.4 Score=31.73 Aligned_cols=29 Identities=3% Similarity=-0.271 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
..|.++|.+-...++|++|+.||++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888889999999999999999887
No 281
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.80 E-value=22 Score=39.77 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----CCC-CccH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS----NPP-NSHC 499 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd----P~~-~~~~ 499 (614)
.+.+.|..+...|++..|+..|.++-..|... +-....+.|.-.+-+-+|+|........+|..-- ... ...+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 57788999999999999999999988888752 4445677888888888999999888888887541 100 1134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFIN 527 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALk 527 (614)
+..--.|.++..+++|+.|.+.|..+-.
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6777789999999999999988776643
No 282
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=80.42 E-value=2.9 Score=36.12 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=68.5
Q ss_pred hhHhhHHHHHhhcCCC-CCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCc
Q 047433 58 VLALSGLWNIAMTQPD-DPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVI 136 (614)
Q Consensus 58 ~~~~~~~~~~~~~~p~-~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~ 136 (614)
.-++..|++++-..|. -.+|-+.|+++=+..++. ++|.-+=.+|+=+++..+=+..+-.+..++.|+|
T Consensus 25 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 93 (120)
T cd00020 25 REAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-----------SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93 (120)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-----------CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence 3578888888776433 233445577776666654 2345555678888888888888899999999999
Q ss_pred hHHHHHhcccchhhHHHHHHHHhhhhhh
Q 047433 137 PPLMELLRGKISWVEQRVAVRALGHLAS 164 (614)
Q Consensus 137 ~~l~~~~~~~~~wve~r~~~r~l~h~a~ 164 (614)
|.|+++|... +.=-++.|.-+|++|++
T Consensus 94 ~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 94 PKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 9999999876 33344578888887763
No 283
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.32 E-value=14 Score=42.12 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
-++.|..-+.-..++.+...|-...-.||-.||.+ .++-.--..-+++++++.+-..|.+-|+.+|. +..+
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe---~c~~ 473 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------KLFKGYIELELQLREFDRCRKLYEKFLEFSPE---NCYA 473 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH---hhHH
Confidence 34455555666667777888888888888888874 34444445556788888888889999999998 8888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
|..-|..-..||+.+.|..-|.-|+.-
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 888888888899999888888888765
No 284
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.07 E-value=2.6 Score=47.79 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC--------CCC----CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALG-VC--------PSR----PKNERMVLYSNRAQCHLLLREPDAAISDATRA 488 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIe-l~--------P~~----~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A 488 (614)
....+.+.|-.+|+.|.|..++..|.+|+. .| |.. ...-..++.+|-|..|+..|++-.|.+.+.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 344578999999999999999999999995 22 110 11234678999999999999999999999999
Q ss_pred HhcCCCCCccHHHHHHHHHHHHH
Q 047433 489 LCLSNPPNSHCKSLWRRSQAYDM 511 (614)
Q Consensus 489 LeLdP~~~~~~KAyyRRA~Al~~ 511 (614)
...--. ++..|.|+|.|..+
T Consensus 362 v~vfh~---nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHR---NPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhc---CcHHHHHHHHHHHH
Confidence 988777 88999999998765
No 285
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.90 E-value=13 Score=41.56 Aligned_cols=97 Identities=16% Similarity=0.011 Sum_probs=81.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh---CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047433 431 KHLFWLGEIEEAAMKYTEALGV---CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQ 507 (614)
Q Consensus 431 N~lFk~GdyeeAI~~YtkAIel---~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~ 507 (614)
......||++.|+...+...+. .++.....++.++.-+|...+.. +...|..+..++++|.|+ .+-+-.--+.
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pd---lvPaav~AAr 271 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPD---LVPAAVVAAR 271 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCc---cchHHHHHHH
Confidence 4456799999999998776653 34444566788888888777655 489999999999999999 8888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 508 AYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 508 Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
+|+..|+...+-..++.+-+..|.
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCC
Confidence 999999999999999999999883
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.64 E-value=34 Score=33.54 Aligned_cols=100 Identities=11% Similarity=-0.091 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
....+.+........++.+++...+.-.--+.|.. +.+-.--|..++..|+|.+|+..++.+.+-.|. .+-+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~-----~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~---~p~~ 80 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF-----PELDLFDGWLHIVRGDWDDALRLLRELEERAPG---FPYA 80 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC---ChHH
Confidence 44567777888888889999999998888888998 888888899999999999999999998877776 5544
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
---++.|++.+|+.+ =...-.++++..+
T Consensus 81 kALlA~CL~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 81 KALLALCLYALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHcCChH-HHHHHHHHHhcCC
Confidence 444688999999865 1223445666654
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.85 E-value=49 Score=33.75 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchH
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIP 542 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~ 542 (614)
..-.-.|..+...+++++|+...+.++....+.+...-+-.|+|.++..+|.+++|++.+...-...= .+- ...+.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~-~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAI-VAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHH-HHHHh
Confidence 34456788889999999999999999977666444555677999999999999999987765433310 000 11122
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Q 047433 543 YYAARMISKHMNALWVFGGARSKI 566 (614)
Q Consensus 543 ~y~~r~i~Kqmea~~lF~~Ai~k~ 566 (614)
.=+.--.++..++...|..+....
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 222223455566677777776654
No 288
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.53 E-value=18 Score=38.29 Aligned_cols=74 Identities=15% Similarity=-0.015 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRR 505 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRR 505 (614)
..+.=+.+...++++.|...-.+.|.++|.+ +.-+.-||.+|.++|.+.-|+.|....++.-|+ ...+-.-+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~d-----p~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~---~~~a~~ir 255 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPED-----PYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD---DPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCC-----hhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC---chHHHHHH
Confidence 3444456778899999999999999999999 888889999999999999999999999999998 55544434
Q ss_pred HH
Q 047433 506 SQ 507 (614)
Q Consensus 506 A~ 507 (614)
++
T Consensus 256 ~~ 257 (269)
T COG2912 256 AQ 257 (269)
T ss_pred HH
Confidence 33
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.25 E-value=47 Score=35.16 Aligned_cols=107 Identities=15% Similarity=0.022 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHH----HHhcCCCC
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATR----ALCLSNPP 495 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~----ALeLdP~~ 495 (614)
..|..-.+++-.....-+.++|++.|++++.+-..+ ..+.-..++...+..+.++.+|.+|-..+.+ +++.+..
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y- 186 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY- 186 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc-
Confidence 345556677777888899999999999999986543 2344567888999999999999998655544 4444432
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 496 NSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 496 ~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+.-.|++.-.-.+|....+|..|...|+.+...
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 114566666666677777999999999998776
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.13 E-value=27 Score=37.22 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHH
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRES 518 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEA 518 (614)
|..=+....++++ +....++..++..+...|+++.++...++-+.++|. +-++|.++-.+|+..|+...|
T Consensus 137 f~~WV~~~R~~l~-------e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~---~E~~~~~lm~~y~~~g~~~~a 206 (280)
T COG3629 137 FDEWVLEQRRALE-------ELFIKALTKLAEALIACGRADAVIEHLERLIELDPY---DEPAYLRLMEAYLVNGRQSAA 206 (280)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHcCCchHH
Confidence 4444444444444 233778899999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHc
Q 047433 519 LMDCIMFING 528 (614)
Q Consensus 519 L~df~kALkl 528 (614)
+..|++.-++
T Consensus 207 i~~y~~l~~~ 216 (280)
T COG3629 207 IRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHH
Confidence 9999998775
No 291
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.85 E-value=3 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 047433 463 VLYSNRAQCHLLLREPDAAISDATRALCLS 492 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~~ALeLd 492 (614)
.+|..+|.+-+..++|+.|+.|+.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 357778888888889999999999998764
No 292
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.81 E-value=8.3 Score=39.07 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433 442 AAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM 511 (614)
Q Consensus 442 AI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~ 511 (614)
|...|.+|+.+.|.. ...|+.+|..+...|+.-.|+=.|-+++....+ +..|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~-----G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P---f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-----GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP---FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-----CCcccchhhhhccccchHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHH
Confidence 788999999999999 999999999999999999999999999987766 78888888887777
No 293
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=76.35 E-value=12 Score=43.43 Aligned_cols=96 Identities=18% Similarity=0.008 Sum_probs=80.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHH-HHhcCCCCCccHHHHHHH--
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATR-ALCLSNPPNSHCKSLWRR-- 505 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~-ALeLdP~~~~~~KAyyRR-- 505 (614)
..-..+..++...|+.....++..+|.+ +.++.|++.+....|....++.+... +..+.|. +.....-+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~ 144 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPEN-----CPAVQNLAAALELDGLQFLALADISEIAEWLSPD---NAEFLGHLIR 144 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCccc-----chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcc---hHHHHhhHHH
Confidence 3444566778888999999999999999 99999999999998877777666555 9999998 77665555
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 506 ----SQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 506 ----A~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
++.+..+|+..++.....++..+.|+.
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 145 FYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 889999999999999999999998854
No 294
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.68 E-value=20 Score=37.92 Aligned_cols=103 Identities=16% Similarity=0.019 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCcc---HHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSH---CKS 501 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~---~KA 501 (614)
.+-+.|--+-....+.+++..|++|..+.-...+.+-+..-.-+|.=.++-.++++|++.|++++.+-....+. ...
T Consensus 73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el 152 (308)
T KOG1585|consen 73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 33333444445567888888888888874332223336666677777888899999999999998764432112 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFIN 527 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALk 527 (614)
+-..+..|..+.+|+||-..+.+-..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGV 178 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhh
Confidence 44557788899999999887776443
No 295
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=72.84 E-value=32 Score=42.39 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=72.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc----C---CcHHHHHHHHHHHhcCCCCCccHHH
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL----R---EPDAAISDATRALCLSNPPNSHCKS 501 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL----G---dyeeAI~D~~~ALeLdP~~~~~~KA 501 (614)
-.+++...+.|+.|+..|.+.-.--|.. ++--++....|.+.+.. | .+.+|+..+++.- -.|. -+--
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~ 554 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGR--KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVG---APLE 554 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCc--ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCC---CchH
Confidence 3456667788999999999999888864 33345556666666653 2 3455555544422 2344 5667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 502 LWRRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 502 yyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
|..+|.+|..+|+|+|-++.|.-|++..|+++.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 888999999999999999999999999998765
No 296
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.78 E-value=8.8 Score=31.56 Aligned_cols=31 Identities=26% Similarity=0.109 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.+..+..+|-..=+.|+|++|+..|++|++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5567778888888899999999999999875
No 297
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.47 E-value=34 Score=39.85 Aligned_cols=124 Identities=12% Similarity=-0.001 Sum_probs=86.5
Q ss_pred HcCCHH-HHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC
Q 047433 435 WLGEIE-EAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG 513 (614)
Q Consensus 435 k~Gdye-eAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG 513 (614)
..+... -|+..|-..+.++|.+ +.+..... ++..+..+++...++-....++..+|+ +..++..+|.+....|
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~--~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~L~~ale~~~ 115 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVN--PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPE---NCPAVQNLAAALELDG 115 (620)
T ss_pred cccCchhHHHHHHHccCccCCCC--HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcc---cchHHHHHHHHHHHhh
Confidence 334444 3788888888888876 22222222 788888899999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHH-HHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhhc
Q 047433 514 LGRESLMDCIM-FINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARSK 565 (614)
Q Consensus 514 ~yeEAL~df~k-ALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~k 565 (614)
....++.++.. +....|++...- ...+.+|..+...+-+..+..+..++.+
T Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 167 (620)
T COG3914 116 LQFLALADISEIAEWLSPDNAEFL-GHLIRFYQLGRYLKLLGRTAEAELALER 167 (620)
T ss_pred hHHHHHHHHHHHHHhcCcchHHHH-hhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 98888888777 888877533211 2233334444444555555555555444
No 298
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=69.13 E-value=6.2 Score=51.83 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=70.5
Q ss_pred hHhhHHHHHhhcCCC-CCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCch
Q 047433 59 LALSGLWNIAMTQPD-DPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIP 137 (614)
Q Consensus 59 ~~~~~~~~~~~~~p~-~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~ 137 (614)
-+.+-|-+++...|+ =.+....|++..+-.|+.. +.+.-+=..||-++|.-.-...++....+++|.||
T Consensus 208 eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s----------g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp 277 (2102)
T PLN03200 208 NAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ----------GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIP 277 (2102)
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc----------CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Confidence 344445577666554 2244677888888887754 33444557899999998888899999999999999
Q ss_pred HHHHHhcccc--------hhhHHHHHHHHhhhhhh
Q 047433 138 PLMELLRGKI--------SWVEQRVAVRALGHLAS 164 (614)
Q Consensus 138 ~l~~~~~~~~--------~wve~r~~~r~l~h~a~ 164 (614)
+|++++.+.- +=.=||-|++||++++-
T Consensus 278 ~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 278 ALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999998522 11127889999999886
No 299
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=68.67 E-value=21 Score=43.08 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHH----------Hhc
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRA----------LCL 491 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~A----------LeL 491 (614)
+|..+..+-..+--.+++-+++..+++|+++.....+.-+-..|+|.|.-+...+|.+.|++.|.++ |.-
T Consensus 818 eA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 818 EALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 3344444333333334455666667777777766545555677899999999999999999998874 344
Q ss_pred CCCCCccHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHH
Q 047433 492 SNPPNSHCKSLWR----------RSQAYDMKGLGRESLMDCIMFIN 527 (614)
Q Consensus 492 dP~~~~~~KAyyR----------RA~Al~~LG~yeEAL~df~kALk 527 (614)
+|. ..+-|.| -|+-+...|+.+.|+..|..|-.
T Consensus 898 ~p~---~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 898 YPK---QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred ChH---HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 565 4444443 37777788999999999988753
No 300
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=68.48 E-value=6.1 Score=32.86 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=43.7
Q ss_pred cccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHH
Q 047433 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSV 172 (614)
Q Consensus 100 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~ 172 (614)
|.++.|-+|=..|++.+|.+ ... .++|.|+++|. -=.|.=++.|++|||.+.+.+ .++.+
T Consensus 8 l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~~~-~~~~L 67 (88)
T PF13646_consen 8 LQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLK-DEDPMVRRAAARALGRIGDPE-AIPAL 67 (88)
T ss_dssp HHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHT-SSSHHHHHHHHHHHHCCHHHH-THHHH
T ss_pred HhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCHH-HHHHH
Confidence 34556666667899999933 333 34999999995 567899999999999998643 34433
No 301
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.02 E-value=61 Score=36.30 Aligned_cols=131 Identities=16% Similarity=0.115 Sum_probs=78.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC----CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH-HHHHH
Q 047433 431 KHLFWLGEIEEAAMKYTEALGVCPSR----PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK-SLWRR 505 (614)
Q Consensus 431 N~lFk~GdyeeAI~~YtkAIel~P~~----~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K-AyyRR 505 (614)
..+.-.|||..|+...+ -|+++... -.......++..|.||+-+++|.+||+.+...|-.-.. .+ .+..+
T Consensus 130 Rvh~LLGDY~~Alk~l~-~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r----~k~~~~~~ 204 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLE-NIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR----TKNQYHQR 204 (404)
T ss_pred HHHHhccCHHHHHHHhh-ccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhccc
Confidence 44556899999988764 23332211 12344678999999999999999999999998743322 22 33334
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCCCChHhhcch-HHHHHHHHHHHHHHHHHHhhhhhcC
Q 047433 506 SQAYDM-KGLGRESLMDCIMFINGCIRSETTSKRVKI-PYYAARMISKHMNALWVFGGARSKI 566 (614)
Q Consensus 506 A~Al~~-LG~yeEAL~df~kALkl~P~~~D~~~k~kl-~~y~~r~i~Kqmea~~lF~~Ai~k~ 566 (614)
..-+.. ....++....+--|+.++|..-|......+ ..|..++..-|-.....|++.+...
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 333333 356677777888888999965442222211 1133444333333445566666653
No 302
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.70 E-value=11 Score=32.47 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.|..+-.++-.+=+.|+|++||..|++||++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5667788888888999999999999888874
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.92 E-value=1.2e+02 Score=34.91 Aligned_cols=94 Identities=19% Similarity=0.082 Sum_probs=76.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHH
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQA 508 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~A 508 (614)
.-......||.-.|-.....++.-.|.. +....-++.++..+|+|+.|..+..-+=.+-.. -.++.--+-.-
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~-----p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s---~~~~~~~~~r~ 366 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQD-----PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT---TDSTLRCRLRS 366 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCC-----chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC---CchHHHHHHHh
Confidence 3345567899999999999999999988 888888999999999999999888776655444 45677777778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC
Q 047433 509 YDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 509 l~~LG~yeEAL~df~kALkl~P 530 (614)
+..+|++++|+..-...+.-.-
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred hhchhhHHHHHHHHHHHhcccc
Confidence 8999999999988777775533
No 304
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.44 E-value=8.5 Score=33.10 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCP 454 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P 454 (614)
.+..+..+|...=..|+|++|+..|..||+.+-
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Confidence 566788888888899999999999999998753
No 305
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.59 E-value=2.6e+02 Score=32.40 Aligned_cols=105 Identities=13% Similarity=-0.056 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCCC-C
Q 047433 419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC-LSNPP-N 496 (614)
Q Consensus 419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe-LdP~~-~ 496 (614)
+.-.+......|.-...-+.|+.|...|..|.++... .+..+.+-.|.|..|+..|+-+ |+.++++ +.|.. +
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~ 436 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--IDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTN 436 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--HHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCC
Confidence 3446667788898888999999999999999997653 4566788889999999988743 4555554 34431 1
Q ss_pred ------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 497 ------SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 497 ------~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
.....+|-.|.-.+..+++.||...+++.++..
T Consensus 437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 123577888888899999999999999999986
No 306
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=65.45 E-value=39 Score=32.12 Aligned_cols=69 Identities=16% Similarity=-0.023 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV-------CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCL 491 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel-------~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeL 491 (614)
.+--+--....+...|+|++++..-.+||.. ..+. -+....+..+||.++-.+|+.++|+..++.+-+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde-GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE-GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3444556667788999999999888888854 3332 2344567789999999999999999999988653
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.21 E-value=22 Score=38.30 Aligned_cols=63 Identities=19% Similarity=0.109 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFIN 527 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALk 527 (614)
..++.-.|..|++.|.+.+|++.+++++++||- +-..+.-+-+.|..+|+--.+.+.|++.-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL---~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPL---SEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChh---hhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 455666788899999999999999999999999 788888888999999998888887776543
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.96 E-value=40 Score=34.24 Aligned_cols=73 Identities=15% Similarity=-0.047 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
.|--++..|+..-...-+..|++.|.+|++..... .......+.+-.|..+.++|++++|+.-+.+++.....
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 44445555665555566789999999999876431 13344667788999999999999999999999976655
No 309
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.89 E-value=14 Score=31.70 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.+..+..+|..+=+.|+|++|+..|.+||+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567788888889999999999999988874
No 310
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.81 E-value=15 Score=31.56 Aligned_cols=31 Identities=23% Similarity=0.065 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.|..+-.++-.+=+.|+|++|+..|.+||+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5567788888888999999999999999985
No 311
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.63 E-value=22 Score=34.01 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE 477 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd 477 (614)
+....+++.+.+..|+|.-|++..+.++..+|++ ..+..-++.+|.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-----~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-----EEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999 8888888888887764
No 312
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=61.74 E-value=3.5e+02 Score=32.49 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 047433 416 VEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP 495 (614)
Q Consensus 416 l~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~ 495 (614)
+..++..+....+-|.-+-...-|++|...|.+.|.+-++....++...|.-.....+.-...+.|-..+.+||+.-|+
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp- 582 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP- 582 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH-
Confidence 3334445556666677666677789999999999999877544455566666666666667889999999999998885
Q ss_pred CccHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHc
Q 047433 496 NSHCKSLWRR-SQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 496 ~~~~KAyyRR-A~Al~~LG~yeEAL~df~kALkl 528 (614)
-+.|..|-+ |+.-..-|....|+.-|++|-..
T Consensus 583 -~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 583 -EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 266665543 55556668888888888887654
No 313
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=61.63 E-value=6.7 Score=27.36 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=23.8
Q ss_pred CchHHHHHhcccchhhHHHHHHHHhhhhhhc
Q 047433 135 VIPPLMELLRGKISWVEQRVAVRALGHLASY 165 (614)
Q Consensus 135 ~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~ 165 (614)
++|.|+++|.-. +|-=+..|+++||.++.+
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence 379999999988 555578899999998865
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.52 E-value=1e+02 Score=33.84 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=70.3
Q ss_pred HHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------c-----CCCC------------CccHHHH
Q 047433 449 ALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC---------L-----SNPP------------NSHCKSL 502 (614)
Q Consensus 449 AIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe---------L-----dP~~------------~~~~KAy 502 (614)
.|..+|.. ...+...+.++...|++..|-...++||- . ++.. .....++
T Consensus 32 ll~~~PyH-----idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 32 LLQKNPYH-----IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 35678888 88999999999999999999999998862 2 2211 1245799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh-hcchHHHHH
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK-RVKIPYYAA 546 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~-k~kl~~y~~ 546 (614)
+|..+.+.+.|-+.-|++.++-.+.++|.. ||-. ..-|.+|+.
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~g~ll~ID~~AL 150 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DPLGVLLFIDYYAL 150 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-CcchhHHHHHHHHH
Confidence 999999999999999999999999999963 4432 233444443
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=61.24 E-value=48 Score=35.31 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALC 490 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALe 490 (614)
....+.+....+...|+++.++...++-|..+|.+ -.+|...=.+|++.|+...||..|++.-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~-----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD-----EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc-----hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45577888889999999999999999999999998 88899999999999999999999887654
No 316
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.24 E-value=20 Score=31.31 Aligned_cols=64 Identities=17% Similarity=-0.022 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 465 YSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 465 ysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
..-++.=++...+.++|+.-.++||+..++.+.-..++=-+.+||...|+|+++++.-..=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667788999999999999988873223445555678999999999999876555544
No 317
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.49 E-value=19 Score=30.38 Aligned_cols=32 Identities=25% Similarity=0.062 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
..+..+..+|...=..|+|++|+..|.+|++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667888888888999999999999998875
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=60.00 E-value=57 Score=37.22 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATR 487 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ 487 (614)
......+.-+|..|+|.+++.+-.-..+++| . +.+|.-.|.|++..++|++|-..+..
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S-----~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-S-----PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-c-----HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3566778889999999999999888999999 5 89999999999999999999886543
No 319
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=59.95 E-value=49 Score=34.45 Aligned_cols=88 Identities=15% Similarity=0.046 Sum_probs=67.3
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC---CCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhc----CCCC-------Cc
Q 047433 433 LFWLGEIEEAAMKYTEALGVCP---SRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCL----SNPP-------NS 497 (614)
Q Consensus 433 lFk~GdyeeAI~~YtkAIel~P---~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeL----dP~~-------~~ 497 (614)
+.++|+++.|...|+++=...+ .+..+.++..++|-|...++.+ +++.|+.-.++|+++ .+.. +.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3578999999999999877552 1124678889999999999999 999999999999887 3211 13
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHH
Q 047433 498 HCKSLWRRSQAYDMKGLGRESLM 520 (614)
Q Consensus 498 ~~KAyyRRA~Al~~LG~yeEAL~ 520 (614)
..+.+.-++.+|...+.++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 45677778889988887764333
No 320
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.86 E-value=1.1e+02 Score=33.71 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH--cCCcHHHHHHHHHHHh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL--LREPDAAISDATRALC 490 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk--LGdyeeAI~D~~~ALe 490 (614)
.+.....++..+|+.++|..|...++..+..-|.. .+ ...+.+.+.+|.. .-++.+|.+.++..+.
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~-~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGR-EE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch-hh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34466778889999999999999999999853432 11 4677888888876 4578888888776654
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.73 E-value=12 Score=25.10 Aligned_cols=22 Identities=14% Similarity=-0.109 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 047433 501 SLWRRSQAYDMKGLGRESLMDC 522 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df 522 (614)
+++.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3455555555555555555544
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.35 E-value=9.9 Score=25.46 Aligned_cols=24 Identities=21% Similarity=0.033 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHH
Q 047433 463 VLYSNRAQCHLLLREPDAAISDAT 486 (614)
Q Consensus 463 ~lysNRA~~ylkLGdyeeAI~D~~ 486 (614)
.++.++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888877654
No 323
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.30 E-value=3.1e+02 Score=31.02 Aligned_cols=166 Identities=11% Similarity=-0.029 Sum_probs=102.2
Q ss_pred HHHHHcCCH-HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHhcCCCCCc
Q 047433 431 KHLFWLGEI-EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL------------REPDAAISDATRALCLSNPPNS 497 (614)
Q Consensus 431 N~lFk~Gdy-eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL------------GdyeeAI~D~~~ALeLdP~~~~ 497 (614)
...-..|.| .++++.=++.++.+|+. ..+|+-|=.++... .-.++-+.....+|+.+|+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~-----~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npk--- 107 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEF-----YTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPK--- 107 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchh-----hhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCch---
Confidence 334456666 46777778888889987 77777665555432 2456667778889999999
Q ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHH---HHHHHHHh-hhhhcCCCCC-
Q 047433 498 HCKSLWRRSQAYDMKGL--GRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKH---MNALWVFG-GARSKILSSP- 570 (614)
Q Consensus 498 ~~KAyyRRA~Al~~LG~--yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kq---mea~~lF~-~Ai~k~~~~~- 570 (614)
..-+|+.|..++...+. +..=++.+.++++.+|.+-.+-+ ...++..+..++ -.....|. ++|..+.++-
T Consensus 108 sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~---YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYs 184 (421)
T KOG0529|consen 108 SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH---YRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYS 184 (421)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH---HHHHHHHHHhcccccchhHHHHHHHHHhccchhhh
Confidence 99999999999998775 47778899999999875544321 122333333332 11122232 2343332221
Q ss_pred CCCc----------cCCcC-CcccchhhhHHHHHHHHHHhcccccCCc
Q 047433 571 VNNV----------QESYG-ENKSGIEEQRYCDMIRTMMEKKNLISGK 607 (614)
Q Consensus 571 ~~~~----------~e~~~-~~~~g~~eQ~~dD~iral~~~~~~~~g~ 607 (614)
-||. ++..| .-.--.-.+++++...||--.|+..|+.
T Consensus 185 aWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~W 232 (421)
T KOG0529|consen 185 AWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCW 232 (421)
T ss_pred HHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccccee
Confidence 1111 11111 1112233458899999999999887764
No 324
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.15 E-value=16 Score=40.81 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 466 SNRAQCHLLLREPDAAISDATRALCLSNPP------NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 466 sNRA~~ylkLGdyeeAI~D~~~ALeLdP~~------~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
.-+..+|..+|||..|++..+. |+++... ..++..+|..|.||.++++|.+|++.|...+-.-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi 194 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677789999999986543 2332220 1277899999999999999999999999998663
No 325
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=58.53 E-value=9.9 Score=32.48 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhhhhhcccchhHHhhhHHHHHHHHHHHHhhhH
Q 047433 150 VEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTCL 191 (614)
Q Consensus 150 ve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 191 (614)
.|.|.|+=|+||++|-+--++-+-.+ ++|+.=+++|.+|.
T Consensus 2 ~~lKaaLWaighIgss~~G~~lL~~~--~iv~~iv~~a~~s~ 41 (73)
T PF14668_consen 2 LELKAALWAIGHIGSSPLGIQLLDES--DIVEDIVKIAENSP 41 (73)
T ss_pred hHHHHHHHHHHhHhcChHHHHHHhhc--CHHHHHHHHHHhCC
Confidence 37799999999999999999988843 68888888887763
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=58.40 E-value=1.2e+02 Score=29.56 Aligned_cols=84 Identities=10% Similarity=-0.124 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.+.+........++..++.......--+.|.. +.+-.--+-.++..|+|.+|+..++...+-.+. .+-+---
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~-----~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL 83 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNL-----KELDMFDGWLLIARGNYDEAARILRELLSSAGA---PPYGKAL 83 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----cccchhHHHHHHHcCCHHHHHHHHHhhhccCCC---chHHHHH
Confidence 44444455555888888888887777778987 777777788889999999999999998877766 4444445
Q ss_pred HHHHHHHcCCHH
Q 047433 505 RSQAYDMKGLGR 516 (614)
Q Consensus 505 RA~Al~~LG~ye 516 (614)
++.|++.+|+.+
T Consensus 84 ~A~CL~al~Dp~ 95 (153)
T TIGR02561 84 LALCLNAKGDAE 95 (153)
T ss_pred HHHHHHhcCChH
Confidence 688999998865
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.32 E-value=86 Score=33.53 Aligned_cols=83 Identities=8% Similarity=-0.149 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHH---HHHHHHHHcCCH
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLW---RRSQAYDMKGLG 515 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyy---RRA~Al~~LG~y 515 (614)
.+..+..|.+||+.+|++ ..++..+=.+..++.+-++..+-.++++..+|+ +...|. .--+.....-.+
T Consensus 47 ~E~klsilerAL~~np~~-----~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v 118 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-----ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---SPELWREYLDFRQSNFASFTV 118 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcH
Confidence 466788999999999987 666666666777888999999999999999999 555443 333333334467
Q ss_pred HHHHHHHHHHHHcC
Q 047433 516 RESLMDCIMFINGC 529 (614)
Q Consensus 516 eEAL~df~kALkl~ 529 (614)
.+....|.+++..-
T Consensus 119 ~~~~~~y~~~l~~L 132 (321)
T PF08424_consen 119 SDVRDVYEKCLRAL 132 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888887653
No 328
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.52 E-value=27 Score=33.46 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHH
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESL 519 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL 519 (614)
......+|...+..|+|..|...++.++..+|+ +..+..-++.+|..+|.-.++.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~---n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPD---NEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHhccCH
Confidence 456677888899999999999999999999999 9999999999999988665443
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=57.43 E-value=45 Score=40.55 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
|+=-|.-+-..|+.+.|+..|+.|-..
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 444466666789999999999887653
No 330
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=57.32 E-value=99 Score=33.09 Aligned_cols=80 Identities=9% Similarity=-0.077 Sum_probs=65.8
Q ss_pred HHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Q 047433 444 MKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE------------PDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM 511 (614)
Q Consensus 444 ~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd------------yeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~ 511 (614)
..|++.+.-+|.+ ..+|.....-.-.+-. .+.-++.+++||+.+|+ +.+.+...=.+..+
T Consensus 6 ~el~~~v~~~P~d-----i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~---~~~L~l~~l~~~~~ 77 (321)
T PF08424_consen 6 AELNRRVRENPHD-----IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD---SERLLLGYLEEGEK 77 (321)
T ss_pred HHHHHHHHhCccc-----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 4577888889988 7777777665555433 45678899999999999 89888888888889
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 047433 512 KGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 512 LG~yeEAL~df~kALkl~P~ 531 (614)
....++-.+-+++++...|+
T Consensus 78 ~~~~~~l~~~we~~l~~~~~ 97 (321)
T PF08424_consen 78 VWDSEKLAKKWEELLFKNPG 97 (321)
T ss_pred hCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999885
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.18 E-value=37 Score=34.56 Aligned_cols=75 Identities=27% Similarity=0.240 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHHHHHHHHHHHcCCHHHH
Q 047433 440 EEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSLWRRSQAYDMKGLGRES 518 (614)
Q Consensus 440 eeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAyyRRA~Al~~LG~yeEA 518 (614)
++|...|-++-. .|.- .-+.+..-+|.-|. ..|.++|+..+.++|++.+.. +.++..+.-++.+++.+|+++.|
T Consensus 123 ~~A~~~fL~~E~-~~~l---~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPEL---ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCC---CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456655543322 3321 22667777766665 678899999999999998876 78999999999999999999988
Q ss_pred H
Q 047433 519 L 519 (614)
Q Consensus 519 L 519 (614)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 332
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=56.80 E-value=18 Score=30.81 Aligned_cols=32 Identities=19% Similarity=-0.003 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
..+..+..+|...=..|+|++|+..|.+||+.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667888888899999999999999999875
No 333
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.59 E-value=65 Score=33.09 Aligned_cols=85 Identities=14% Similarity=0.012 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHHHHHcCCHH
Q 047433 441 EAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS---HCKSLWRRSQAYDMKGLGR 516 (614)
Q Consensus 441 eAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~---~~KAyyRRA~Al~~LG~ye 516 (614)
..|+.+++|++..... .......+-...|.-|+++|+|++|+..++.+...-...++ ....+.++..|...+|+.+
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 3444444444433221 12334556667888888999999999998888655433222 3567778888888888888
Q ss_pred HHHHHHHHH
Q 047433 517 ESLMDCIMF 525 (614)
Q Consensus 517 EAL~df~kA 525 (614)
+.+...-+.
T Consensus 236 ~~l~~~leL 244 (247)
T PF11817_consen 236 DYLTTSLEL 244 (247)
T ss_pred HHHHHHHHH
Confidence 777655443
No 334
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.94 E-value=26 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.123 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.|..+..+|...=..|+|++|+..|.+|++.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5556777888888889999999999888874
No 335
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.76 E-value=34 Score=25.16 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCC
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYT--EALGVCPS 455 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~Yt--kAIel~P~ 455 (614)
.+...|-.++.+|+|++|+..|+ -+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45667888888888888888844 77777664
No 336
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=55.13 E-value=1.3e+02 Score=35.98 Aligned_cols=142 Identities=14% Similarity=0.025 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc--------------chhHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPK--------------NERMVLYSNRAQCHLLLREPDAAISDATR 487 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~--------------~~~a~lysNRA~~ylkLGdyeeAI~D~~~ 487 (614)
.+..|.+-|.--.+..+++.|.....+|... |.... .--..+|+..+..--.+|-++..-..|++
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4556667776667777777777777777754 22100 00123555556666666777777777777
Q ss_pred HHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHh-hcchHHHHHHHHHHHHH-HHHHHhhhhhc
Q 047433 488 ALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSK-RVKIPYYAARMISKHMN-ALWVFGGARSK 565 (614)
Q Consensus 488 ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~-k~kl~~y~~r~i~Kqme-a~~lF~~Ai~k 565 (614)
.|.|.-. .+..-.+-|.-+.+-.-+++|.+.|++.+.+.|=..-.+. +.-+.....|.-+..++ +..+|..|...
T Consensus 503 iidLria---TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 503 IIDLRIA---TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHhcC---CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 7776655 5556666666666666677777777777666542111111 11222233333333443 34566666654
Q ss_pred CC
Q 047433 566 IL 567 (614)
Q Consensus 566 ~~ 567 (614)
.+
T Consensus 580 Cp 581 (835)
T KOG2047|consen 580 CP 581 (835)
T ss_pred CC
Confidence 43
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.95 E-value=40 Score=40.75 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.++-++.-|+.+|++|+|++|...|-++|..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3457889999999999999999999999864
No 338
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=54.74 E-value=28 Score=29.08 Aligned_cols=31 Identities=29% Similarity=0.133 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.+..+..+|...=..|+|++|+..|..|++.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777888888889999999999998875
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.45 E-value=29 Score=37.17 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=47.1
Q ss_pred HcCCcHHHHHHHHHHHhcCCCC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 474 LLREPDAAISDATRALCLSNPP-NSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 474 kLGdyeeAI~D~~~ALeLdP~~-~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+..++++|++.+.+++++.|.. .|-.||+-+.-.+++.+|+|++-+..|++.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4568999999999999999875 567789999999999999999998888887765
No 340
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.09 E-value=49 Score=33.98 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRAL 489 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL 489 (614)
-..+.|.++|..|+|+.|+..|+.+....-.+ -......+......|+.++|+.+..+..+-+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45688999999999999999999997653221 134567788899999999999999988776554
No 341
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.01 E-value=40 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHcCC
Q 047433 500 KSLWRRSQAYDMKGLGRESLMD--CIMFINGCI 530 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~d--f~kALkl~P 530 (614)
+.++-.|..++..|++++|+.. |+-+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3456667777777777777777 436665544
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.85 E-value=1.4e+02 Score=34.49 Aligned_cols=92 Identities=11% Similarity=-0.098 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCCCc
Q 047433 426 IKQEAKHLFWLG-----EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR---EPDAAISDATRALCLSNPPNS 497 (614)
Q Consensus 426 lK~~GN~lFk~G-----dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG---dyeeAI~D~~~ALeLdP~~~~ 497 (614)
....|..+.+.. +++.|+..|++|-+... +.+..++|.+|..-. ++..|...+..|....
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 445677776633 78899999999999866 446777888887655 6788999999887654
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 047433 498 HCKSLWRRSQAYDM----KGLGRESLMDCIMFINGC 529 (614)
Q Consensus 498 ~~KAyyRRA~Al~~----LG~yeEAL~df~kALkl~ 529 (614)
+..|.+++|.+|.. ..+.+.|...|+++.+..
T Consensus 359 ~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 359 HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 67999999999875 358899999999999886
No 343
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=51.78 E-value=1.2e+02 Score=36.63 Aligned_cols=101 Identities=16% Similarity=0.059 Sum_probs=58.5
Q ss_pred HHHHHhhcCCHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHH
Q 047433 403 RKREKMMMMSEEK-VEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAA 481 (614)
Q Consensus 403 ~erEk~~~ls~ee-l~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeA 481 (614)
++|.+ +++.-+ ++.+......+-.-+..+...|+|+-|.+.|+++=.. ..--..|-+.|+|..|
T Consensus 746 kew~k--ai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~-------------~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 746 KEWKK--AISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF-------------KDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhh--hHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh-------------HHHHHHHhccccHHHH
Confidence 35666 555433 3333334445566677777888888888888765322 1122345567777777
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 047433 482 ISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDC 522 (614)
Q Consensus 482 I~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df 522 (614)
.+...+... |. .-...|...++-+.+.|+|.||...|
T Consensus 811 ~kla~e~~~--~e--~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 811 FKLAEECHG--PE--ATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhcC--ch--hHHHHHHHhHHhHHhhcchhhhhhee
Confidence 666555432 22 02445666666677777777665544
No 344
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=51.04 E-value=21 Score=30.77 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFI 526 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kAL 526 (614)
..|..+|.-+...|++++|+..|++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344455555555566665555555554
No 345
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=50.48 E-value=33 Score=45.49 Aligned_cols=122 Identities=22% Similarity=0.241 Sum_probs=87.4
Q ss_pred CCCchhhhhhHHHHhhhCCCC--CcccchhHhhHHHHHhhcCCCCCCCc--cccHHHHHHHHHHhhcCCccccccCCccc
Q 047433 32 EPNSSLRRAGVASFFKEMPLQ--DDQQHVLALSGLWNIAMTQPDDPLFP--ALGIFNCMSSLISKGVNNRDWLLRDQNIY 107 (614)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~--~lg~~~~~~~l~~~~~~~~~~~~~~~~~~ 107 (614)
..||+.=.+.++.+-++|-.. +.+++..++.-|=..+-+.+++-.|. .-|++.=...++.. .+..
T Consensus 5 ~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-----------g~~~ 73 (2102)
T PLN03200 5 MDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-----------GTLG 73 (2102)
T ss_pred ccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-----------CCHH
Confidence 357888899999999999866 44556667888888888887765555 25565555555532 2221
Q ss_pred chhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcc
Q 047433 108 IPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYD 166 (614)
Q Consensus 108 ~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~ 166 (614)
+=--|+-+++.-... ++...+-+.+|+||||+++|+.- ++.=|..|++||.+|++..
T Consensus 74 vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~ 130 (2102)
T PLN03200 74 AKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGG 130 (2102)
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCc
Confidence 212334455555544 67778888999999999999876 8888889999999999874
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.41 E-value=2.9e+02 Score=29.92 Aligned_cols=119 Identities=12% Similarity=0.074 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCC-------cchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccH
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGVCPSRP-------KNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHC 499 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel~P~~~-------~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~ 499 (614)
..|+.+|..|+|..--....+.-..|..+. ...+.++|.---+.|-..++-.+-...|.++|.+...- ++-.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 568888888888766555555555554431 12356778777888888888888888999999887542 1223
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHH
Q 047433 500 KSLWRR--SQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAA 546 (614)
Q Consensus 500 KAyyRR--A~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~ 546 (614)
-+-.|- |.-+..-|++++|-.||-+|++-...+..|.--.++++.+.
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 333332 56678889999999999999998766666653456665443
No 347
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=50.24 E-value=24 Score=32.63 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSN 493 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP 493 (614)
.-.|++.|+++..++|.. +..+.++|.=+-....|++++.-|+++|.+..
T Consensus 60 Ll~sve~~s~a~~Lsp~~-----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~ 109 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDS-----AHSLFELASQLGSVKYYKKAVKKAKRGLSVTN 109 (111)
T ss_pred HHHhHHHHHHHhccChhH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence 457899999999999998 88899988887777889999999999997653
No 348
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.91 E-value=2.1e+02 Score=30.79 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcH-HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHH
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPD-AAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRE 517 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdye-eAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeE 517 (614)
..+=++..++.++-+|.+ -.+|..|=...-.+|++. .-+..+..+|..|.. |..||-.|--+....+.++.
T Consensus 94 L~~El~~l~eI~e~npKN-----YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK---NYHaWshRqW~~r~F~~~~~ 165 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKN-----YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK---NYHAWSHRQWVLRFFKDYED 165 (318)
T ss_pred HHHHHHHHHHHHHhCccc-----hhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc---chhhhHHHHHHHHHHhhHHH
Confidence 556678889999999999 889999999999999998 889999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 047433 518 SLMDCIMFINGCIRSE 533 (614)
Q Consensus 518 AL~df~kALkl~P~~~ 533 (614)
-+......++.+..++
T Consensus 166 EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 166 ELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999998865433
No 349
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.50 E-value=4.8e+02 Score=30.39 Aligned_cols=99 Identities=20% Similarity=0.065 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC---CCCCcchhHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCC
Q 047433 422 LVGLIKQEAKHLF-WLGEIEEAAMKYTEALGVC---PSRPKNERMVLYSNRAQCHLLLR-EPDAAISDATRALCLSNPPN 496 (614)
Q Consensus 422 ~A~~lK~~GN~lF-k~GdyeeAI~~YtkAIel~---P~~~~~~~a~lysNRA~~ylkLG-dyeeAI~D~~~ALeLdP~~~ 496 (614)
+|....+.|.-+| -..+++.|-...++|..+. |.. -+....+++-+|.+|.... .+..|..-.++||++....+
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f-ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF-YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH-HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 5666777777764 5788999999999998775 432 2566788999999999998 88899999999999987753
Q ss_pred -ccHHHHHHHHHHHHHcCCHHHHHHH
Q 047433 497 -SHCKSLWRRSQAYDMKGLGRESLMD 521 (614)
Q Consensus 497 -~~~KAyyRRA~Al~~LG~yeEAL~d 521 (614)
++-|..+++++.+.--.++.-|++.
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 5668999999999999999988876
No 350
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.37 E-value=4.9e+02 Score=31.69 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHH
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSL 502 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAy 502 (614)
-.++++.|..+.....|++|.++|.+.=. ..|...|++.+.+|++-..... --|. +.+.+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------------~e~~~ecly~le~f~~LE~la~----~Lpe---~s~ll 855 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD-------------TENQIECLYRLELFGELEVLAR----TLPE---DSELL 855 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------hHhHHHHHHHHHhhhhHHHHHH----hcCc---ccchH
Confidence 34677777777788888888888875322 2356677777777765433222 2244 45566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 047433 503 WRRSQAYDMKGLGRESLMDCIM 524 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~k 524 (614)
-..|..+...|.-++|++.|.+
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh
Confidence 6677777777777777766644
No 351
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=49.14 E-value=36 Score=34.45 Aligned_cols=45 Identities=11% Similarity=-0.021 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 481 AISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 481 AI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
|...|.+|+.+.|. +...|.++|......|+.-+|+=.|-+++-.
T Consensus 1 A~~~Y~~A~~l~P~---~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPS---NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TT---BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCC---CCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 67899999999999 9999999999999999999999999999854
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.07 E-value=2.3e+02 Score=34.80 Aligned_cols=102 Identities=20% Similarity=0.098 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---Ccc
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP---NSH 498 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~---~~~ 498 (614)
.++..--+|......|+.++|+..-+.++..-|......+..++++.+.+..-.|++.+|.....++.++.-.. ...
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 44555566778889999999999999999999987677789999999999999999999999988888773321 112
Q ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHH
Q 047433 499 CKSLWRRSQAYDMKGL--GRESLMDCI 523 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~--yeEAL~df~ 523 (614)
.-+.+..+.++.+.|+ +.+....|.
T Consensus 537 ~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 537 LWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456677889999993 333333443
No 353
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=48.67 E-value=1.3e+02 Score=38.22 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC----
Q 047433 420 RVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS---- 492 (614)
Q Consensus 420 ~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd---- 492 (614)
++.+..++..+..+...|++++|+..-.+|.-++... ........|.|++...+..+....|+..+.+++.+.
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 4466778888889999999999999887777654321 234458899999999999999999999999998763
Q ss_pred -CCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHHHHHHHhhhhh
Q 047433 493 -NPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMNALWVFGGARS 564 (614)
Q Consensus 493 -P~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqmea~~lF~~Ai~ 564 (614)
|..|.-+-..-+.+..+..+++++-|+...+.|++....---+. ..+.. +....+...++..+.|+.+..
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~-~l~~~-~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK-ELETA-LSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc-chhhh-hHHHHHHHHHhhhHHHHHHHH
Confidence 22122455667888889999999999999999998643221111 11222 112223444555666666543
No 354
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.65 E-value=2.5e+02 Score=31.38 Aligned_cols=62 Identities=11% Similarity=-0.103 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH--cCCcHHHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL--LREPDAAISDAT 486 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk--LGdyeeAI~D~~ 486 (614)
....++..+|+.++|..|...|.+++...+..........+.+.+.+|.. .-++++|....+
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44556778999999999999999999886543233456788888888886 457778888777
No 355
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=47.83 E-value=2.5e+02 Score=29.14 Aligned_cols=99 Identities=12% Similarity=-0.108 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhC---CCCCc----chhHHHHHHHHHHHHHcCCc-HHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 433 LFWLGEIEEAAMKYTEALGVC---PSRPK----NERMVLYSNRAQCHLLLREP-DAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 433 lFk~GdyeeAI~~YtkAIel~---P~~~~----~~~a~lysNRA~~ylkLGdy-eeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
+|..|+|+.|++.-.-||+.. |+..+ -..+.-..+-|....+.|.. +-.+......+.-+-+-|.-+.|-+-
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 578999999999999999875 54322 23455566777777777763 23332222222111111113444444
Q ss_pred --HHHHHH---------HcCCHHHHHHHHHHHHHcCCC
Q 047433 505 --RSQAYD---------MKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 505 --RA~Al~---------~LG~yeEAL~df~kALkl~P~ 531 (614)
.|.++. ..++...|+..+++|++++|+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 455552 346788999999999999873
No 356
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=47.69 E-value=14 Score=40.58 Aligned_cols=64 Identities=22% Similarity=0.090 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 426 IKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 426 lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
..+.+...++.+.+..|+..-..++..++.. ..+|+.|++.+..+.++++|+.+...+....|+
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~-----tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSK-----TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhh-----CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 3445666678888888988888888877777 889999999999999999999999999999999
No 357
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.11 E-value=72 Score=34.37 Aligned_cols=80 Identities=9% Similarity=-0.090 Sum_probs=59.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcC
Q 047433 434 FWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKG 513 (614)
Q Consensus 434 Fk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG 513 (614)
|.-.+-++++..+-.-+-..+ ...-.--+.-.+..|++.+|..-+..++..+|. +.++..-++.+|...|
T Consensus 113 F~G~qPesqlr~~ld~~~~~~-------~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g 182 (304)
T COG3118 113 FQGAQPESQLRQFLDKVLPAE-------EEEALAEAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAG 182 (304)
T ss_pred cCCCCcHHHHHHHHHHhcChH-------HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcC
Confidence 333344556665544333222 233444567778899999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHH
Q 047433 514 LGRESLMDCI 523 (614)
Q Consensus 514 ~yeEAL~df~ 523 (614)
+.++|...+.
T Consensus 183 ~~e~A~~iL~ 192 (304)
T COG3118 183 DVEAAQAILA 192 (304)
T ss_pred ChHHHHHHHH
Confidence 9998766443
No 358
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=46.73 E-value=26 Score=39.34 Aligned_cols=103 Identities=18% Similarity=0.054 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---Ccch-------hHHHHHHHHHHHHHc--CCc-HHHHHHHHHHH--
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNE-------RMVLYSNRAQCHLLL--REP-DAAISDATRAL-- 489 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~-------~a~lysNRA~~ylkL--Gdy-eeAI~D~~~AL-- 489 (614)
...+.|-.+|..|+|.+|+..|...|..-|-- .+++ +..+....-...+.+ ++. +...++-++.+
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34457999999999999999999999865432 2222 222222222222222 221 12333444444
Q ss_pred -------hcCCCCCccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC
Q 047433 490 -------CLSNPPNSHCKSLWRRSQ-AYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 490 -------eLdP~~~~~~KAyyRRA~-Al~~LG~yeEAL~df~kALkl~P 530 (614)
+|.|. |.-.-+|.|. ..++.++|.-|....++.|++.|
T Consensus 286 AAYFThc~LQp~---H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p 331 (422)
T PF06957_consen 286 AAYFTHCKLQPS---HLILALRSAMSQAFKLKNFITAASFARRLLELNP 331 (422)
T ss_dssp HHHHCCS---HH---HHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--
T ss_pred HHHHhcCCCcHH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCC
Confidence 45666 6665566665 45678999999999999999987
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.20 E-value=4.3e+02 Score=28.89 Aligned_cols=103 Identities=12% Similarity=-0.026 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CccHHHHHH
Q 047433 428 QEAKHLFWLGEIEEAAMKYTEALGV-CPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP--NSHCKSLWR 504 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~YtkAIel-~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~--~~~~KAyyR 504 (614)
.....+++.|+|.+|+....-.+.- -.-+.+..+...|.--+.+|.+..+..++-...+.|-.+.... |+...|-..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4567789999999999987665532 2222345567888888999999999999998888876543211 114444443
Q ss_pred H--HHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 505 R--SQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 505 R--A~Al~~LG~yeEAL~df~kALkl~P 530 (614)
+ |..+..-.+|.-|..+|-++++-.-
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhccc
Confidence 3 5566677899999999999987643
No 360
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.12 E-value=47 Score=39.25 Aligned_cols=72 Identities=13% Similarity=-0.152 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047433 462 MVLYSNRAQCHLLLREPDAAISDATRALCLSNPPN---SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSE 533 (614)
Q Consensus 462 a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~---~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~ 533 (614)
..++-|-|.-+++..+|..+++-|...+..-|.++ ..+|....++.||..+.+.+.|++.+++|=+.+|++.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 45667889999999999999999999998877642 3578888889999999999999999999999987543
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.10 E-value=46 Score=21.80 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHH
Q 047433 437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRA 469 (614)
Q Consensus 437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA 469 (614)
|+++.|-..|++++..+|.. ..+|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~-----~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKS-----VELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC-----hHHHHHHH
Confidence 56788999999999999987 77776554
No 362
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=45.76 E-value=1.4e+02 Score=34.13 Aligned_cols=187 Identities=20% Similarity=0.286 Sum_probs=102.6
Q ss_pred CccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhcccc-chHHHHHHHHhcCCchHHHHHhccc---chhhHH
Q 047433 77 FPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTM-NKVEFAEKAVKSGVIPPLMELLRGK---ISWVEQ 152 (614)
Q Consensus 77 ~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~-~~~~~~~~av~~~~~~~l~~~~~~~---~~wve~ 152 (614)
+..-|||.=+..+|...-.|. +...+|||-+. +..|.-.. ...++ .+..|.+++.|..- -.=.++
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp----~~~~~~l~g~~-~f~g~la~~~~~~v------~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDP----RLSSLLLPGRM-KFFGNLARVSPQEV------LELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred HHhCCHHHHHHHHHhccccCC----cccchhhhhHH-HHHHHHHhcChHHH------HHHHHHHHHHHHHHhCCCChhHH
Confidence 456788888888888887777 66778998764 22232111 11111 13457887777622 122355
Q ss_pred HHHHHHhhhhhhcccchhHH-hhhHHHHHHHHHHHHhhhHHHHHHhhhcccccccch-hhhh--hhhhccCCCcchhh--
Q 047433 153 RVAVRALGHLASYDRTFDSV-AVYEEEVVKLAMQLASTCLDVVYVNFVAVKDRKKRL-KYHS--DLLTRGVGGLEFEN-- 226 (614)
Q Consensus 153 r~~~r~l~h~a~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~--~l~~~g~~~~~~~~-- 226 (614)
=+|+=+||+++|-..-+..+ ..++ +.++.+|+.+..- .-.-..+ -|+ -.|+ .+++.|-. .-++
T Consensus 308 ~~A~dtlg~igst~~G~~~L~~~~~-~~~~~~l~~~~~~-------~~~~~~~-lk~r~l~al~~il~~~~~--~~~~~i 376 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVEGKQLLLQKQG-PAMKHVLKAIGDA-------IKSGSTE-LKLRALHALASILTSGTD--RQDNDI 376 (503)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhhcc-hHHHHHHHHHHHH-------hcCCchH-HHHHHHHHHHHHHhcCCC--CchHHH
Confidence 78999999999988877777 4333 4444443332211 1000000 010 0111 22221110 0000
Q ss_pred -ccHHHHHhhhhhhHHHhhhhhhcccc--chhhhhcchHHHhHhhhhhcccCCCCCC------cchhHHHHhhhcccchh
Q 047433 227 -QKAEEWACQLQCWSLYLLNCFACKER--SLDLICNKQEFLMDLCNMWGGLVNHNSP------AGVGLIRILCYSKTGRK 297 (614)
Q Consensus 227 -~~ae~w~~ql~c~s~~~~~~~a~~~~--~~~~~~~~~~~l~~l~~~wg~l~~~~~~------~~~~~~~~~~~~~~~~~ 297 (614)
.-.+.|=. ++.-..- .+--+| +.| |+.++|+.||.++-|-.
T Consensus 377 ~~~~~~w~~-----------~~~~~~~~~~l~~~~-------------------~qPF~elr~a~~~~l~~l~~~~Wg~~ 426 (503)
T PF10508_consen 377 LSITESWYE-----------SLSGSPLSNLLMSLL-------------------KQPFPELRCAAYRLLQALAAQPWGQR 426 (503)
T ss_pred HHHHHHHHH-----------HhcCCchHHHHHHHh-------------------cCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 22334422 2222221 122233 334 88999999999999999
Q ss_pred hHHHHHHHHHhhcccccCCC
Q 047433 298 NIAECKQVIENLCNLSRSSD 317 (614)
Q Consensus 298 aia~~~~~i~~lc~~srssd 317 (614)
.+..+++.++.+= .|++|
T Consensus 427 ~i~~~~gfie~ll--dr~~E 444 (503)
T PF10508_consen 427 EICSSPGFIEYLL--DRSTE 444 (503)
T ss_pred HHHhCccHHhhhc--CCCCC
Confidence 9999999999874 45555
No 363
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.58 E-value=81 Score=36.45 Aligned_cols=88 Identities=14% Similarity=0.003 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Q 047433 436 LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-----EPDAAISDATRALCLSNPPNSHCKSLWRRSQAYD 510 (614)
Q Consensus 436 ~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-----dyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~ 510 (614)
..|.+.|+..|..+.+-.-.......+.+.+.+|.+|++-. ++..|+..+.+|-++... .+.+++|.++.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----~a~~~lg~~~~ 336 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----DAQYLLGVLYE 336 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----hHHHHHHHHHH
Confidence 46889999999988771000000001456778888988843 778899999999988755 79999999998
Q ss_pred HcC---CHHHHHHHHHHHHHc
Q 047433 511 MKG---LGRESLMDCIMFING 528 (614)
Q Consensus 511 ~LG---~yeEAL~df~kALkl 528 (614)
.-. ++..|...|..|.+.
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred cCCccccHHHHHHHHHHHHHc
Confidence 766 578999999999876
No 364
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=44.80 E-value=4.9e+02 Score=29.05 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hcCC-----CCCccHHHHH---HHHHHH
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRAL-CLSN-----PPNSHCKSLW---RRSQAY 509 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~AL-eLdP-----~~~~~~KAyy---RRA~Al 509 (614)
.+.||..|.++.++.|+. -.=.|.|..+...|.-.+.-....+.. +++. .......-|| .++.+.
T Consensus 242 ldkAi~~Y~kgFe~~~~~------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~ 315 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIEPDY------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEAS 315 (374)
T ss_pred HHHHHHHHHHHHcCCccc------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 789999999999999874 334466666766665433332222221 1110 0000223444 445567
Q ss_pred HHcCCHHHHHHHHHHHHHcCC
Q 047433 510 DMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 510 ~~LG~yeEAL~df~kALkl~P 530 (614)
.-.|+++.|...+++++++.|
T Consensus 316 vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 316 VLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHcCCHHHHHHHHHHHhhcCC
Confidence 779999999999999999976
No 365
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.48 E-value=76 Score=35.10 Aligned_cols=91 Identities=10% Similarity=-0.127 Sum_probs=69.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-CccHHHHHHHHHHHHH
Q 047433 433 LFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSHCKSLWRRSQAYDM 511 (614)
Q Consensus 433 lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~~KAyyRRA~Al~~ 511 (614)
+...|-|.+|...-.+|++++|.+ ..+..-.|.++.-.|++.++.+...+.=..-... -+...-||.-|..|.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D-----~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFD-----CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcc-----hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 346789999999999999999998 7778888888888899999988665543221110 0123457888899999
Q ss_pred cCCHHHHHHHHHHHHHc
Q 047433 512 KGLGRESLMDCIMFING 528 (614)
Q Consensus 512 LG~yeEAL~df~kALkl 528 (614)
-++|+.|+..|.+-+-.
T Consensus 260 ~aeye~aleIyD~ei~k 276 (491)
T KOG2610|consen 260 GAEYEKALEIYDREIWK 276 (491)
T ss_pred ccchhHHHHHHHHHHHH
Confidence 99999999999876543
No 366
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.88 E-value=8e+02 Score=33.73 Aligned_cols=100 Identities=12% Similarity=-0.020 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHH
Q 047433 424 GLIKQEAKHLFWLGEIEEAAMKYTEALG---VCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCK 500 (614)
Q Consensus 424 ~~lK~~GN~lFk~GdyeeAI~~YtkAIe---l~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~K 500 (614)
..|+.+...=-...+..+-|-.+++++- .+|+ .+.....+|.+.|..-.+.|.++-|-...-.|.+..++ +
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~-~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~-----~ 1703 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSN-LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP-----E 1703 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccc-ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-----h
Confidence 3444444332222335666666666653 2443 46778999999999999999999999999999988866 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
++.-+|+.+-..|+...|+..+++-++++
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999653
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.53 E-value=40 Score=26.05 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHh
Q 047433 466 SNRAQCHLLLREPDAAISDATRALC 490 (614)
Q Consensus 466 sNRA~~ylkLGdyeeAI~D~~~ALe 490 (614)
.++|.+|+.+|+++.|..-.+.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 368
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=42.46 E-value=45 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
.+..+..+|...=..|+|++|...|..+|+.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556677777777889999999999988875
No 369
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.03 E-value=89 Score=29.31 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047433 419 MRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR 456 (614)
Q Consensus 419 ~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~ 456 (614)
...--..-.+.|..+...|++++|+.++.+||..+|.-
T Consensus 59 ~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 59 MERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 33455567789999999999999999999999999973
No 370
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.69 E-value=1.2e+02 Score=33.54 Aligned_cols=87 Identities=16% Similarity=0.027 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHH
Q 047433 437 GEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGR 516 (614)
Q Consensus 437 GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~ye 516 (614)
-+|..-...|.-...+.|+ ++.-.|||.+.-+..-...++.-...... +|.-+.+.-.+--||-.+..+|+.+
T Consensus 310 tDW~~I~aLYdaL~~~apS------PvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~ 382 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS------PVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLDGYHLYHAARADLLARLGRVE 382 (415)
T ss_pred CChHHHHHHHHHHHHhCCC------CeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccccccccHHHHHHHHHHhCChH
Confidence 3555556667666666665 57778999999888888888776655443 3321225556677999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 047433 517 ESLMDCIMFINGCI 530 (614)
Q Consensus 517 EAL~df~kALkl~P 530 (614)
||-..|++++.+.+
T Consensus 383 eAr~aydrAi~La~ 396 (415)
T COG4941 383 EARAAYDRAIALAR 396 (415)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999976
No 371
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.30 E-value=92 Score=29.74 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC------cch----hHHHHHHHHHHHHHcCCcHHHHHHHHH----HHh
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRP------KNE----RMVLYSNRAQCHLLLREPDAAISDATR----ALC 490 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~------~~~----~a~lysNRA~~ylkLGdyeeAI~D~~~----ALe 490 (614)
.+-..|+.+|+.+++-.+|-.|++|+.+..+-. -++ ....--|+|.-+..+|+.+-.+++.+- ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999998753320 011 233456999999999999999988764 566
Q ss_pred cCCCC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 491 LSNPP-NSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 491 LdP~~-~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
|-|.= +..-.++ ...+|--..|+-+ +++..|
T Consensus 83 LiPQCp~~~C~af------i~sLGCCk~ALl~---F~KRHP 114 (140)
T PF10952_consen 83 LIPQCPNTECEAF------IDSLGCCKKALLD---FMKRHP 114 (140)
T ss_pred hccCCCCcchHHH------HHhhhccHHHHHH---HHHhCC
Confidence 77761 1122332 2345666666655 456666
No 372
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.61 E-value=35 Score=37.17 Aligned_cols=82 Identities=7% Similarity=-0.168 Sum_probs=67.7
Q ss_pred HHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHH-HHHHHHHcCCHHHHHHHH
Q 047433 444 MKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWR-RSQAYDMKGLGRESLMDC 522 (614)
Q Consensus 444 ~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyR-RA~Al~~LG~yeEAL~df 522 (614)
-.|.++-..-|++ +.+|+.-+.--.+.|-|.+--..|.++++.+|. ++..|.- .+.-+...++++.+.+.|
T Consensus 94 f~~~R~tnkff~D-----~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~---nvdlWI~~c~~e~~~~ani~s~Ra~f 165 (435)
T COG5191 94 FELYRSTNKFFND-----PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL---NVDLWIYCCAFELFEIANIESSRAMF 165 (435)
T ss_pred EeeehhhhcCCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CceeeeeeccchhhhhccHHHHHHHH
Confidence 3455666667888 888888888888888999999999999999999 8888876 455677889999999999
Q ss_pred HHHHHcCCCCC
Q 047433 523 IMFINGCIRSE 533 (614)
Q Consensus 523 ~kALkl~P~~~ 533 (614)
.+++.++|+++
T Consensus 166 ~~glR~N~~~p 176 (435)
T COG5191 166 LKGLRMNSRSP 176 (435)
T ss_pred HhhhccCCCCc
Confidence 99999988544
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.57 E-value=90 Score=30.47 Aligned_cols=48 Identities=19% Similarity=-0.091 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047433 479 DAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCI 530 (614)
Q Consensus 479 eeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P 530 (614)
+..++-..+.++..|+ +..|.+.+.++..+|+.++|....+++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445566677777776 77788888888888888888888888888877
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.59 E-value=3.9e+02 Score=27.31 Aligned_cols=96 Identities=8% Similarity=-0.109 Sum_probs=70.6
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcC-------CcHHHHHHHHHHHhcCC
Q 047433 425 LIKQEAKHLFW----LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLR-------EPDAAISDATRALCLSN 493 (614)
Q Consensus 425 ~lK~~GN~lFk----~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLG-------dyeeAI~D~~~ALeLdP 493 (614)
.....|..++. ..|+.+|...|.+|.+..-... .....+++.+|..-. +...|+..+.+|-...
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 44556666665 4499999999999999754320 233667777776631 2337888888888776
Q ss_pred CCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 047433 494 PPNSHCKSLWRRSQAYDM----KGLGRESLMDCIMFINGC 529 (614)
Q Consensus 494 ~~~~~~KAyyRRA~Al~~----LG~yeEAL~df~kALkl~ 529 (614)
+..+.+++|..|.. -.++++|...|.++.+..
T Consensus 186 ----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 186 ----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred ----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 46899999987765 348999999999999984
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=39.58 E-value=1.4e+02 Score=31.28 Aligned_cols=58 Identities=12% Similarity=-0.135 Sum_probs=48.5
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 471 CHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 471 ~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
-+++-+...+||.+...-++-+|. +...-.-+-+.|.-.|+++.|+..++-+-++.|+
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 466778899999999999999998 6555555667888899999999999999999874
No 376
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=39.42 E-value=5.8e+02 Score=28.44 Aligned_cols=96 Identities=9% Similarity=-0.107 Sum_probs=66.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhc-CCCCCccHHHHHHHHH
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLL---LREPDAAISDATRALCL-SNPPNSHCKSLWRRSQ 507 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylk---LGdyeeAI~D~~~ALeL-dP~~~~~~KAyyRRA~ 507 (614)
.+-...+|+.=|.... .++.-|+..-......-...|.++.+ .|+.++|+..+..++.- .+. .+..|--.|.
T Consensus 150 SyRdiqdydamI~Lve-~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~---~~d~~gL~GR 225 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVE-TLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP---DPDTLGLLGR 225 (374)
T ss_pred HhhhhhhHHHHHHHHH-HhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---ChHHHHHHHH
Confidence 4444556666565554 34444432112225566678888888 99999999999996544 444 7788888888
Q ss_pred HHHHc---------CCHHHHHHHHHHHHHcCCC
Q 047433 508 AYDMK---------GLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 508 Al~~L---------G~yeEAL~df~kALkl~P~ 531 (614)
+|..+ ...++|+..|+++.+..|+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 87653 3578999999999999874
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.10 E-value=48 Score=25.60 Aligned_cols=26 Identities=15% Similarity=-0.111 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 503 WRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 503 yRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
+.+|.+|..+|+++.|...+++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 67899999999999999999999964
No 378
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=39.03 E-value=32 Score=26.53 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=33.6
Q ss_pred hhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhh
Q 047433 112 AAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHL 162 (614)
Q Consensus 112 ~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~ 162 (614)
|+..||.--=...+..+ -....++|.|+.+|+-.=.=| +..|++|||-|
T Consensus 7 A~~aLg~l~~~~~~~~~-~~~~~~~~~L~~~L~d~~~~V-R~~A~~aLg~l 55 (55)
T PF13513_consen 7 AAWALGRLAEGCPELLQ-PYLPELLPALIPLLQDDDDSV-RAAAAWALGNL 55 (55)
T ss_dssp HHHHHHCTTTTTHHHHH-HHHHHHHHHHHHHTTSSSHHH-HHHHHHHHHCH
T ss_pred HHHHHhhHhcccHHHHH-HHHHHHHHHHHHHHcCCCHHH-HHHHHHHHhcC
Confidence 56677762222233333 366789999999998877766 77889999864
No 379
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.88 E-value=2.8e+02 Score=34.33 Aligned_cols=107 Identities=12% Similarity=-0.028 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHH--HHHHHHHH----------Hc--CCcHHH--H
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLY--SNRAQCHL----------LL--REPDAA--I 482 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~ly--sNRA~~yl----------kL--GdyeeA--I 482 (614)
......++|-.++..|+|.+|++.|..+|-.-|-. .+++.+.+. ...+.-|+ ++ ...+.+ +
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~El 1069 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLEL 1069 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHH
Confidence 34456678999999999999999999999766542 222222222 22222222 12 223333 3
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 483 SDATRALCLSNPPNSHCKSLWRRS-QAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 483 ~D~~~ALeLdP~~~~~~KAyyRRA-~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
..|=.-..|.|. |.-.-.|.| .++++++++..|-...++.+++.|.
T Consensus 1070 AaYFt~~~Lqp~---H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~ 1116 (1202)
T KOG0292|consen 1070 AAYFTHCKLQPM---HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPS 1116 (1202)
T ss_pred HHHhhcCCCCcH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Confidence 334444567777 554444444 5889999999999999999999884
No 380
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=37.66 E-value=71 Score=38.33 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=77.2
Q ss_pred chhHhhHHHHHhhcCCCCCCCccccHHHHHHHHHHhhcCCccccccCCcccchhhhhhhhhccccchHHHHHHHHhcCCc
Q 047433 57 HVLALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWLLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVI 136 (614)
Q Consensus 57 ~~~~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~ 136 (614)
.+++++.|++.+...=|--+..+.||++-..+|+.-+ |.+ -++ =+-.++..-+.+.+- -.+=|+.|+|
T Consensus 307 lil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~--~~~----l~~-----~aLrlL~NLSfd~~~-R~~mV~~GlI 374 (708)
T PF05804_consen 307 LILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE--NED----LVN-----VALRLLFNLSFDPEL-RSQMVSLGLI 374 (708)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC--CHH----HHH-----HHHHHHHHhCcCHHH-HHHHHHCCCc
Confidence 5578999999999888888889999999999998642 211 112 266888888887765 5578999999
Q ss_pred hHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHH
Q 047433 137 PPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSV 172 (614)
Q Consensus 137 ~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~ 172 (614)
|+|++||.-. ++ +.+|++.|-||..-|.+-..+
T Consensus 375 PkLv~LL~d~-~~--~~val~iLy~LS~dd~~r~~f 407 (708)
T PF05804_consen 375 PKLVELLKDP-NF--REVALKILYNLSMDDEARSMF 407 (708)
T ss_pred HHHHHHhCCC-ch--HHHHHHHHHHhccCHhhHHHH
Confidence 9999999842 33 468999999998877654433
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.56 E-value=1.5e+02 Score=32.18 Aligned_cols=58 Identities=21% Similarity=0.104 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATR 487 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ 487 (614)
-+-..+..+...|.+.+|++.-++++.++|-+ ...+--+-+.+..+||--.|++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~-----e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-----EQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHHhccchhhhhHHHH
Confidence 34455677788999999999999999999987 77777778889999998888776655
No 382
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=36.34 E-value=2.6e+02 Score=27.17 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCC
Q 047433 421 VLVGLIKQEAKHLFWLG-EIEEAAMKYTEALGVCPSR 456 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~G-dyeeAI~~YtkAIel~P~~ 456 (614)
.--..-...|..+...| ++.+|+.++.+||.+||.-
T Consensus 88 ~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 88 AFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 34556678999999999 9999999999999999973
No 383
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=36.19 E-value=1.6e+02 Score=36.48 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc----c
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS----H 498 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~----~ 498 (614)
.-.+.++++..-....|.+|+..|++.-. .|.- +.=|...|.+|..+|+|++-|+.+.-|++-.|+.+. .
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (932)
T PRK13184 519 GITLLEKASEQGDPRDFTQALSEFSYLHG-GVGA-----PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLR 592 (932)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCC-----chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 33444555544333568899999987554 4554 667999999999999999999999999999998321 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 047433 499 CKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSET 534 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D 534 (614)
-..-||+=.+.+. +...|+....-++...|....
T Consensus 593 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 593 DHLVYRLHESLYK--HRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccccc
Confidence 1234444444443 334666777778888885443
No 384
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.01 E-value=1.9e+02 Score=26.01 Aligned_cols=51 Identities=10% Similarity=-0.002 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE 477 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd 477 (614)
.+.....+|-..+-.|||+.|.....++-+..+.. ...|.--|++-..+||
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~-----~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNP-----LLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHcCC
Confidence 56678889999999999999999999998776654 5556655666555554
No 385
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.01 E-value=4.4e+02 Score=30.71 Aligned_cols=115 Identities=10% Similarity=-0.043 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC-CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-Ccc
Q 047433 422 LVGLIKQEAKHLF-WLGEIEEAAMKYTEALGVCPSR-PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP-NSH 498 (614)
Q Consensus 422 ~A~~lK~~GN~lF-k~GdyeeAI~~YtkAIel~P~~-~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~-~~~ 498 (614)
++......|..++ .-.+++.|....++++.++... ..+.+..+.+-.+.+|.+.+... |+..++++|+.-.+. ...
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 5667788888887 5678999999999999998542 23445556666689998888877 999999999765441 112
Q ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCChHh
Q 047433 499 CKSLWRRSQ--AYDMKGLGRESLMDCIMFINGCIRSETTSK 537 (614)
Q Consensus 499 ~KAyyRRA~--Al~~LG~yeEAL~df~kALkl~P~~~D~~~ 537 (614)
+.-.+|.-. .+...+++..|+..++......-...|+..
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 333334432 222237999999999999988644445543
No 386
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.74 E-value=2.5e+02 Score=28.68 Aligned_cols=88 Identities=11% Similarity=-0.081 Sum_probs=58.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHc----CCcHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047433 429 EAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLL----REPDAAISDATRALCLSNPPNSHCKSLWR 504 (614)
Q Consensus 429 ~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkL----GdyeeAI~D~~~ALeLdP~~~~~~KAyyR 504 (614)
.+-..+..+++..|+..|.++-... + .....+.+.+|..- .+..+|+..+..+.+ .. +..+.+.
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~--~-----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g---~~~a~~~ 114 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELG--D-----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DG---LAEALFN 114 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcC--C-----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cc---cHHHHHh
Confidence 3444556677778888877766622 2 35666667776653 456777777774443 33 5677788
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHc
Q 047433 505 RSQAYDM----KGLGRESLMDCIMFING 528 (614)
Q Consensus 505 RA~Al~~----LG~yeEAL~df~kALkl 528 (614)
+|..|.. ..++.+|...|+++.+.
T Consensus 115 lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 115 LGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 8887776 44788888888888877
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.32 E-value=2.5e+02 Score=29.56 Aligned_cols=60 Identities=13% Similarity=-0.016 Sum_probs=51.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 430 AKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 430 GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
..++.+.+...+||..-..-++..|.+ +....-+=+.|.-.|+|++|...++-+-+++|+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtd-----a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTD-----AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcc-----ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 446778889999999999999999998 555555556677889999999999999999998
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=33.30 E-value=9.9e+02 Score=29.68 Aligned_cols=117 Identities=17% Similarity=0.019 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C--CcchhHHHHHHHHHHHHHcCCcHHHHHHH
Q 047433 410 MMSEEKVEEMRVLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS--R--PKNERMVLYSNRAQCHLLLREPDAAISDA 485 (614)
Q Consensus 410 ~ls~eel~~~~~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~--~--~~~~~a~lysNRA~~ylkLGdyeeAI~D~ 485 (614)
.++.+.+...++ -....+=.+....+|.+|-....++-..-|. . .....+.+-.-+|.+.+..|++++|+..+
T Consensus 405 ~lP~~~l~~~P~---Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~la 481 (894)
T COG2909 405 ALPAELLASTPR---LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLA 481 (894)
T ss_pred hCCHHHHhhCch---HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455555543222 2334455566778898888887777665443 1 24567788888999999999999999999
Q ss_pred HHHHhcCCCCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047433 486 TRALCLSNPPN--SHCKSLWRRSQAYDMKGLGRESLMDCIMFINGC 529 (614)
Q Consensus 486 ~~ALeLdP~~~--~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~ 529 (614)
+.++..=|..- ...-++...|.+..-.|++++|+...+.+.+..
T Consensus 482 r~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 482 RLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 99998877621 134566777888999999999999998888774
No 389
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.74 E-value=2.8e+02 Score=35.01 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCc----cHH
Q 047433 425 LIKQEAKHLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNS----HCK 500 (614)
Q Consensus 425 ~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~----~~K 500 (614)
....-|+.+|..|.|+.|--.|+. ..-|..+|..+..+|+|+.|+...++|-....=+.. --+
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~-------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN-------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 467889999999999999988863 445888999999999999999999887432110000 001
Q ss_pred HHHHHHH------------------HHHHcCCHHHHHHHHHHHHHc
Q 047433 501 SLWRRSQ------------------AYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 501 AyyRRA~------------------Al~~LG~yeEAL~df~kALkl 528 (614)
--||+|+ -|...|-|+|-+..++.++-+
T Consensus 1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 1234443 356678888888888888766
No 390
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.49 E-value=31 Score=28.56 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=25.9
Q ss_pred chHHHHHhcccchhhHHHHHHHHhhhhhhc
Q 047433 136 IPPLMELLRGKISWVEQRVAVRALGHLASY 165 (614)
Q Consensus 136 ~~~l~~~~~~~~~wve~r~~~r~l~h~a~~ 165 (614)
||+|++.|..--.|--++.|+++||.+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~ 30 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP 30 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 799999997788898999999999977654
No 391
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=31.57 E-value=1.1e+02 Score=31.33 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=41.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHH
Q 047433 432 HLFWLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAI 482 (614)
Q Consensus 432 ~lFk~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI 482 (614)
.+|...|-+.|+..|-+++++.+.+ ...-+.++.-+|..|.++|+++.|-
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3455788999999999999997653 3455899999999999999999874
No 392
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.50 E-value=1.7e+02 Score=25.25 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047433 501 SLWRRSQAYDMKGLGRESLMDCIMFINGCIR 531 (614)
Q Consensus 501 AyyRRA~Al~~LG~yeEAL~df~kALkl~P~ 531 (614)
.+.+.|.--...|+|++|+..|..+++..-.
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3445566666779999999999999987643
No 393
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=31.41 E-value=1.7e+02 Score=35.30 Aligned_cols=144 Identities=22% Similarity=0.371 Sum_probs=92.4
Q ss_pred HHHHhhhCCCCCcccchh---HhhHHHHHhhcCCCCCCCccccHHHHHHHHHHhhcCCcccc--ccCCcccchhhhhhh-
Q 047433 42 VASFFKEMPLQDDQQHVL---ALSGLWNIAMTQPDDPLFPALGIFNCMSSLISKGVNNRDWL--LRDQNIYIPYYAAHV- 115 (614)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~lg~~~~~~~l~~~~~~~~~~~--~~~~~~~~~yy~ah~- 115 (614)
+.+..|-+-.-+...+.+ .|+-|=++ .++++++|| .+||++-|=-=.+.|.+|- .+.. =+||+-.-+.
T Consensus 470 LlKlIRNiS~h~~~~k~~f~~~i~~L~~~-v~~~~~ee~----~vE~LGiLaNL~~~~ld~~~ll~~~-~llp~L~~~L~ 543 (708)
T PF05804_consen 470 LLKLIRNISQHDGPLKELFVDFIGDLAKI-VSSGDSEEF----VVECLGILANLTIPDLDWAQLLQEY-NLLPWLKDLLK 543 (708)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHH-hhcCCcHHH----HHHHHHHHHhcccCCcCHHHHHHhC-CHHHHHHHHhC
Confidence 445556655544333332 33333344 566777664 6788888877777777885 3332 3577766554
Q ss_pred ---------------hhccccchHHHHHHHHhcCCchHHHHHhcccch---hhHHHHHHHHhhhhhhcccchhHHhhhHH
Q 047433 116 ---------------IGSYTMNKVEFAEKAVKSGVIPPLMELLRGKIS---WVEQRVAVRALGHLASYDRTFDSVAVYEE 177 (614)
Q Consensus 116 ---------------~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~---wve~r~~~r~l~h~a~~~~~f~~~~~~~~ 177 (614)
+|+-.+ -++-|...+++|+|+.|++||+.|-- -|=|= +=++.++-.|+.|.+.+-.+.
T Consensus 544 ~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQi--l~~f~~ll~h~~tr~~ll~~~- 619 (708)
T PF05804_consen 544 PGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQI--LYVFYQLLFHEETREVLLKET- 619 (708)
T ss_pred CCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHH--HHHHHHHHcChHHHHHHHhcc-
Confidence 443332 34778888899999999999999863 33332 346889999999999987664
Q ss_pred HHHHHH-----------HHHHhhhHHHHH
Q 047433 178 EVVKLA-----------MQLASTCLDVVY 195 (614)
Q Consensus 178 ~~~~~~-----------~~~~~~~~~~~~ 195 (614)
+++.-= -+.|.+||++|=
T Consensus 620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 620 EIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 454322 245667777763
No 394
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=30.31 E-value=57 Score=37.88 Aligned_cols=64 Identities=19% Similarity=-0.043 Sum_probs=53.0
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 426 IKQEAKHLFW---LGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 426 lK~~GN~lFk---~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
+-+++..+.+ .|+.-.|+..-..|++++|.. ..++..++.|+..++++.+|+++...+....|.
T Consensus 411 l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-----~kah~~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 411 LENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-----QKAHFRLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-----HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 4445555544 457788999999999999988 899999999999999999999988777777774
No 395
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.82 E-value=3.4e+02 Score=29.70 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHHHHHHHHHHHcCCcHH----------HHHHHHH------
Q 047433 427 KQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLYSNRAQCHLLLREPDA----------AISDATR------ 487 (614)
Q Consensus 427 K~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~lysNRA~~ylkLGdyee----------AI~D~~~------ 487 (614)
.+.+|.+.+.+++++||..|.+.+..--.. ...+.-....+++..|...|++.. +..++++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 457888889999999999999988762211 122334567788888888887643 3333322
Q ss_pred ---HHhcCCCCCcc------------------HH------HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 488 ---ALCLSNPPNSH------------------CK------SLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 488 ---ALeLdP~~~~~------------------~K------AyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
.++.-|..+-+ -+ .-..+..+++..|.|.+|+......+.-
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222321101 11 2234677899999999999988777644
No 396
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=29.46 E-value=72 Score=31.01 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=42.8
Q ss_pred hhhccCCCCCCCCCCCCCeeEEeccCCCchhhhhhHHHHhhhC-CCCCcccchhHhhHHHHHhhcCCCCCCCc
Q 047433 7 KVEKNIPTNNKRTCANPCCFFCTMEEPNSSLRRAGVASFFKEM-PLQDDQQHVLALSGLWNIAMTQPDDPLFP 78 (614)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 78 (614)
.+++-||.+ |..-|.|.|-=+ -+|. +-..|+.| |...++...-..-.-|.-|.+|||.-+|-
T Consensus 91 ~~~~~~~~~----~~~lg~f~CqGk-~~~~-----~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~HPde~Dl~ 153 (160)
T PF12641_consen 91 NVEALLPKG----NEILGTFMCQGK-MDPK-----VIEKYKKMLPKNPPHAMTPERLARFDEAASHPDEEDLQ 153 (160)
T ss_pred HHHHhhccC----CeecceEEeCCc-CCHH-----HHHHHHhccCCCCCCcccHHHHHHHHHHhcCCCHHHHH
Confidence 445555554 777899999722 2343 44557777 77777766666777899999999976553
No 397
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.98 E-value=3.5e+02 Score=26.61 Aligned_cols=70 Identities=13% Similarity=-0.120 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047433 460 ERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRS 532 (614)
Q Consensus 460 ~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~ 532 (614)
.....+.....+-++.++.+++..-+...--+.|. ....-.--|..+...|++.+|+..|+....-.|..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~---~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE---FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 34566777777778889999998888888889999 89999999999999999999999999988777643
No 398
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.76 E-value=1.1e+02 Score=33.95 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHHHHHHHHHHHcCCcHHHHH
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLYSNRAQCHLLLREPDAAIS 483 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~lysNRA~~ylkLGdyeeAI~ 483 (614)
..+..+...|+.++..++|+.|...|++|..++..- ...+-...++-.|.++++++++...+-
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356688999999999999999999999999987542 122345666777888888877766544
No 399
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=27.38 E-value=3.4e+02 Score=31.60 Aligned_cols=129 Identities=11% Similarity=-0.050 Sum_probs=75.1
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCChHhhcchHHHHHHHHHHHHH
Q 047433 475 LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFINGCIRSETTSKRVKIPYYAARMISKHMN 554 (614)
Q Consensus 475 LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl~P~~~D~~~k~kl~~y~~r~i~Kqme 554 (614)
-||.-.|-+-...+|+-.|. .+....-++.+..++|.|+.|+.++.-+=+.-- +.+.. .. +..|..-+--.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~-s~~~~-~~----~~~r~~~~l~r 372 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG-TTDST-LR----CRLRSLHGLAR 372 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc-CCchH-HH----HHHHhhhchhh
Confidence 47888888888889999888 777777789999999999999998766544321 11111 11 11111111000
Q ss_pred HHHHHhhhhh---cCCCCCCCCccCCcCCcccchhhhHHHHHHHHHHhcccccCCcccccc
Q 047433 555 ALWVFGGARS---KILSSPVNNVQESYGENKSGIEEQRYCDMIRTMMEKKNLISGKLCAIH 612 (614)
Q Consensus 555 a~~lF~~Ai~---k~~~~~~~~~~e~~~~~~~g~~eQ~~dD~iral~~~~~~~~g~~~~~~ 612 (614)
-...++.|.. .....|..-.-..-.-+..+...+.+-.--|-++.+|.-.+|-.+-..
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 0111222111 111122221112223355677777888888889999998888776543
No 400
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=26.52 E-value=1.3e+02 Score=24.64 Aligned_cols=29 Identities=21% Similarity=0.027 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
..+..+|.-....|++++|+..|.++++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34556666667777888888777777654
No 401
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=26.27 E-value=1e+03 Score=27.84 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=55.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Q 047433 435 WLGEIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE-PDAAISDATRALCLSNPPNSHCKSLWRRSQAY 509 (614)
Q Consensus 435 k~GdyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd-yeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al 509 (614)
+.+.|.+--..|.++|...|++ +.+|.--|.=.+..+. .+.|-.-+.++|+.+|+.+.-.+.|+|.-.-|
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~-----~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNN-----PDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCC-----chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Confidence 3444888888999999999999 9999888877777776 89999999999999999444445566654443
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=26.05 E-value=2e+02 Score=27.99 Aligned_cols=50 Identities=24% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 047433 439 IEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP 494 (614)
Q Consensus 439 yeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~ 494 (614)
-+..++...+.+...|+ +..|.+.+.++..+|+.++|-....++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P~------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD------PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34556666777888886 789999999999999999999999999999995
No 403
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=24.80 E-value=1.5e+02 Score=37.74 Aligned_cols=107 Identities=12% Similarity=-0.044 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---CcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC---
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR---PKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNP--- 494 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~---~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~--- 494 (614)
..+....+.|.+....|.+.+|.+ ..+++.+..+. ...+.+..|.-+|..+.+++++++|+..+.+|.-+...
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 367788899999999999999988 66666554321 12344889999999999999999999999888755321
Q ss_pred --CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 495 --PNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 495 --~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
.+-...+|-.++...+..+....|+..+.+++++
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 0114578888888888888999999999888765
No 404
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.38 E-value=4.6e+02 Score=25.66 Aligned_cols=62 Identities=16% Similarity=0.014 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 464 LYSNRAQCHLLLREPDAAISDATRALC-LSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 464 lysNRA~~ylkLGdyeeAI~D~~~ALe-LdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
=|.++|.-++-...-.+.+...-+-|. -+.. ++..++..|.||.++|+..+|-..+++|.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~---~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEI---NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCC---CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 466666665555444555555444443 2333 6889999999999999999999999999886
No 405
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=23.82 E-value=5.8e+02 Score=30.84 Aligned_cols=45 Identities=11% Similarity=-0.107 Sum_probs=27.2
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433 475 LREPDAAISDATRALCLSNPPNSHCKSLWRRSQAYDMKGLGRESLMDCIMF 525 (614)
Q Consensus 475 LGdyeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA 525 (614)
.++|.+|...+++-=++-|+ .|+.-|+-+.+..+|+||-+.|.+|
T Consensus 786 ~~~W~eAFalAe~hPe~~~d------Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEFKDD------VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhhCcccccc------ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 45566666666555444444 5666666666666666666666554
No 406
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.70 E-value=3.9e+02 Score=32.69 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCHHHHHHHH------HHHHhhCCCCCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC------C--
Q 047433 428 QEAKHLFWLGEIEEAAMKY------TEALGVCPSRPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLS------N-- 493 (614)
Q Consensus 428 ~~GN~lFk~GdyeeAI~~Y------tkAIel~P~~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLd------P-- 493 (614)
..|..+-+..+|+.|+++| .+||++..--.++....+-..-+.-+...|+++.||..+-.|-.+- -
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 3444444667888888876 4677765433344445555566777777888888877654432210 0
Q ss_pred -C-------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047433 494 -P-------------PNSHCKSLWRRSQAYDMKGLGRESLMDCIMF 525 (614)
Q Consensus 494 -~-------------~~~~~KAyyRRA~Al~~LG~yeEAL~df~kA 525 (614)
. .+...+-|=..+.-|..+|+|+.|.+.|.++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 0 0001122223456667777777777766554
No 407
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=4.5e+02 Score=29.72 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCcchhHHHHHHHHHHHHHcCC--cHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH-cCC
Q 047433 438 EIEEAAMKYTEALGVCPSRPKNERMVLYSNRAQCHLLLRE--PDAAISDATRALCLSNPPNSHCKSLWRRSQAYDM-KGL 514 (614)
Q Consensus 438 dyeeAI~~YtkAIel~P~~~~~~~a~lysNRA~~ylkLGd--yeeAI~D~~~ALeLdP~~~~~~KAyyRRA~Al~~-LG~ 514 (614)
-.++-+..-..+|..+|+. -.+|+-|..++.+.+. +..=++.|.++|++||. |..+|-.|-.+... ...
T Consensus 90 ~ld~eL~~~~~~L~~npks-----Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~R---Nfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKS-----YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPR---NFHAWHYRRFVVEQAERS 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchh-----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcc---cccchHHHHHHHHHHhcc
Confidence 4566677778899999998 8999999999998764 68889999999999999 77776544443333 333
Q ss_pred ---HHHHHHHHHHHHHcCC
Q 047433 515 ---GRESLMDCIMFINGCI 530 (614)
Q Consensus 515 ---yeEAL~df~kALkl~P 530 (614)
..+=+....+++.-++
T Consensus 162 ~~~~~~El~ftt~~I~~nf 180 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLINDNF 180 (421)
T ss_pred cccchhHHHHHHHHHhccc
Confidence 4555666667766655
No 408
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.47 E-value=1e+03 Score=26.16 Aligned_cols=105 Identities=12% Similarity=-0.104 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCcchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--Ccc
Q 047433 422 LVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPS-RPKNERMVLYSNRAQCHLLLREPDAAISDATRALCLSNPP--NSH 498 (614)
Q Consensus 422 ~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~-~~~~~~a~lysNRA~~ylkLGdyeeAI~D~~~ALeLdP~~--~~~ 498 (614)
--..+..-...+-++|-|..|.+.-.-.+.++|. ++ .-+..-.=..-++.++|+--|.-++......... ..-
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP----~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP----LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 3445666677788899999999999999999998 41 1112222223346678877777777655421110 001
Q ss_pred HHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHcCC
Q 047433 499 CKSLWRRSQAYDMKGLG---------------RESLMDCIMFINGCI 530 (614)
Q Consensus 499 ~KAyyRRA~Al~~LG~y---------------eEAL~df~kALkl~P 530 (614)
+.--|-++.|++.+++- +.|-..+++|+...|
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 13557788899999998 899999999988765
No 409
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.12 E-value=1.4e+02 Score=25.62 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFING 528 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALkl 528 (614)
..+.++|.-....|+|++|+..|..+++.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556666667778888888888777754
No 410
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.90 E-value=1.9e+02 Score=27.97 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 047433 421 VLVGLIKQEAKHLFWLGEIEEAAMKYTEALGVCPSR 456 (614)
Q Consensus 421 ~~A~~lK~~GN~lFk~GdyeeAI~~YtkAIel~P~~ 456 (614)
..-..-.+.|..++.+|+++++..++..||.++|.-
T Consensus 79 ~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 79 KFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 345566789999999999999999999999999975
No 411
>PRK09687 putative lyase; Provisional
Probab=22.77 E-value=56 Score=34.42 Aligned_cols=62 Identities=21% Similarity=0.145 Sum_probs=44.8
Q ss_pred cccCCcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhccc
Q 047433 100 LLRDQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDR 167 (614)
Q Consensus 100 ~~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~ 167 (614)
|+++.|..+=..|+.++|-..+.... ..-++|.|.+++..-=.|+=++.|+.||||+.+.+.
T Consensus 62 ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 62 LCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc
Confidence 34577778888888888876553321 224678888886666678888899999999977553
No 412
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=22.71 E-value=2.2e+02 Score=29.75 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=59.1
Q ss_pred ccCCcccchhhhhhhhhccccchHHHHHHHH-hcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHHhhhHHHH
Q 047433 101 LRDQNIYIPYYAAHVIGSYTMNKVEFAEKAV-KSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEV 179 (614)
Q Consensus 101 ~~~~~~~~~yy~ah~~gsy~~~~~~~~~~av-~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~ 179 (614)
...+..+|-..|.+++|--+-. .|+...+ +.|.|+.+..+|.-.-.+|- .-|+.||..++.-......|..|-..|
T Consensus 22 ~~t~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr-~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 22 ESTEDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLLNDPNPSVR-EKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred hcCCChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHcCCCChHHH-HHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 3456788999999988853332 3555554 67999999999999988886 448999999998877777776665555
Q ss_pred HHH
Q 047433 180 VKL 182 (614)
Q Consensus 180 ~~~ 182 (614)
++.
T Consensus 99 c~~ 101 (254)
T PF04826_consen 99 CEE 101 (254)
T ss_pred HHH
Confidence 543
No 413
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.60 E-value=1.4e+02 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047433 500 KSLWRRSQAYDMKGLGRESLMDCIMFIN 527 (614)
Q Consensus 500 KAyyRRA~Al~~LG~yeEAL~df~kALk 527 (614)
..+..+|.-....|+|++|+..|..++.
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555556666666666666666553
No 414
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=22.36 E-value=76 Score=29.83 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=45.6
Q ss_pred CCcccchhhhhhhhhccccchHHHHHHHHhcCCchHHHHHhcccchhhHHHHHH
Q 047433 103 DQNIYIPYYAAHVIGSYTMNKVEFAEKAVKSGVIPPLMELLRGKISWVEQRVAV 156 (614)
Q Consensus 103 ~~~~~~~yy~ah~~gsy~~~~~~~~~~av~~~~~~~l~~~~~~~~~wve~r~~~ 156 (614)
|...| |+|-.++..+..--..+|-+..++.+ .|+.+||...-|+|-+|.|-
T Consensus 74 d~~~~-p~~~~~l~~~m~~E~~~f~~~vl~~n--~~~~~ll~sd~tfvn~~LA~ 124 (128)
T PF07631_consen 74 DPEKF-PEFSPDLREAMREETDEFFEHVLEEN--GSVSELLTSDYTFVNQRLAK 124 (128)
T ss_pred Chhhc-cccCHHHHHHHHHHHHHHHHHHHHcC--CCHHHHhcCCceeECHHHHH
Confidence 44556 99999999999999999999999999 78999999999999999873
No 415
>PF12854 PPR_1: PPR repeat
Probab=22.26 E-value=1.8e+02 Score=20.59 Aligned_cols=27 Identities=11% Similarity=-0.102 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047433 498 HCKSLWRRSQAYDMKGLGRESLMDCIM 524 (614)
Q Consensus 498 ~~KAyyRRA~Al~~LG~yeEAL~df~k 524 (614)
+.-.|--+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 467788888888888999988887764
No 416
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=22.01 E-value=1.6e+02 Score=25.60 Aligned_cols=30 Identities=20% Similarity=0.035 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 047433 423 VGLIKQEAKHLFWLGEIEEAAMKYTEALGV 452 (614)
Q Consensus 423 A~~lK~~GN~lFk~GdyeeAI~~YtkAIel 452 (614)
|-...++|-.+=..|+.++|+..|.++|..
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 334445555555556666666666666543
No 417
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.93 E-value=1.4e+02 Score=31.52 Aligned_cols=119 Identities=23% Similarity=0.322 Sum_probs=56.5
Q ss_pred hccccchHHHHHH------HHhcCCchHHHHHhcccchhhHHHHHHHHhhhhhhcccchhHHhhhHHHHHHHHHHHHhhh
Q 047433 117 GSYTMNKVEFAEK------AVKSGVIPPLMELLRGKISWVEQRVAVRALGHLASYDRTFDSVAVYEEEVVKLAMQLASTC 190 (614)
Q Consensus 117 gsy~~~~~~~~~~------av~~~~~~~l~~~~~~~~~wve~r~~~r~l~h~a~~~~~f~~~~~~~~~~~~~~~~~~~~~ 190 (614)
|.-|||=..|+.. |+.+|.||-+=-.. -.+.=.|-+.||. ..++.|+..+..+...-.+-++-=..+=..|
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~-~~~~e~e~~~A~~--~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~ 77 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAW-QAVAEAENRAAVE--KAVEHYEEQMEQRVKLPTETLEELLELHEQC 77 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHH--SS-SSHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 5556666666654 77999998763311 1111124445543 1234455555444222111011112223445
Q ss_pred HHHHHHhhh--cccccccchhhhhhhhhccCCCcchhhccHHHHHhhhhhhHH
Q 047433 191 LDVVYVNFV--AVKDRKKRLKYHSDLLTRGVGGLEFENQKAEEWACQLQCWSL 241 (614)
Q Consensus 191 ~~~~~~~~~--~~~~~~~~~~y~~~l~~~g~~~~~~~~~~ae~w~~ql~c~s~ 241 (614)
.....+.|- .+.|. +.+|...|..+ +..--.+=.+--+.+|...|+.+
T Consensus 78 ~~~A~~~F~~~s~~d~--~~~~~~~L~~~-i~~~~~~~~~~N~~~s~~~C~~~ 127 (297)
T PF02841_consen 78 EKEALEVFMKRSFGDE--DQKYQKKLMEQ-IEKKFEEFCKQNEEASEKKCQAL 127 (297)
T ss_dssp HHHHHHHHHHH----G--GGHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 45553 78999887764 33322222345578899999886
No 418
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.32 E-value=40 Score=37.56 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=17.5
Q ss_pred cccCCcccchhhhhhhhh-ccc
Q 047433 100 LLRDQNIYIPYYAAHVIG-SYT 120 (614)
Q Consensus 100 ~~~~~~~~~~yy~ah~~g-sy~ 120 (614)
|-+.-|||||-|++|||- ||.
T Consensus 447 lErnwnIr~pGf~~d~I~~s~r 468 (505)
T COG5624 447 LERNWNIRCPGFVDDIIHMSYR 468 (505)
T ss_pred eccccceecCcchHHHHHHHHH
Confidence 456679999999999998 773
Done!