Query 047434
Match_columns 93
No_of_seqs 100 out of 737
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3489 Mitochondrial import i 99.9 3.7E-25 8E-30 140.9 9.5 79 8-88 3-82 (86)
2 PF02953 zf-Tim10_DDP: Tim10/D 99.9 6.3E-25 1.4E-29 133.5 8.2 64 22-85 3-66 (66)
3 KOG3479 Mitochondrial import i 99.9 5.5E-22 1.2E-26 125.8 7.9 65 24-88 3-67 (83)
4 KOG1733 Mitochondrial import i 99.9 7.3E-21 1.6E-25 122.9 10.0 69 18-87 21-89 (97)
5 KOG3480 Mitochondrial import i 99.9 4.1E-21 8.8E-26 122.9 8.2 65 24-88 16-81 (90)
6 KOG3377 Uncharacterized conser 90.3 1.9 4.2E-05 30.1 6.8 57 29-85 78-138 (143)
7 PF05811 DUF842: Eukaryotic pr 90.0 3.4 7.4E-05 28.0 7.7 58 27-84 68-129 (131)
8 KOG3489 Mitochondrial import i 84.7 8.3 0.00018 24.8 8.5 79 4-83 2-81 (86)
9 PF08095 Toxin_25: Hefutoxin f 61.5 1.1 2.3E-05 21.7 -1.4 19 43-67 4-22 (22)
10 KOG3377 Uncharacterized conser 58.0 62 0.0014 22.6 7.6 50 28-83 30-79 (143)
11 PF05892 Tricho_coat: Trichovi 42.0 53 0.0012 24.1 4.1 52 28-79 122-179 (194)
12 smart00856 PMEI Plant invertas 38.4 1.1E+02 0.0023 19.8 5.0 32 56-87 65-96 (148)
13 PF06644 ATP11: ATP11 protein; 34.0 89 0.0019 23.8 4.4 31 54-84 213-252 (266)
14 KOG3196 NADH:ubiquinone oxidor 33.2 28 0.0006 26.0 1.5 32 38-69 131-166 (233)
15 TIGR01614 PME_inhib pectineste 33.1 1.2E+02 0.0027 20.4 4.7 30 57-86 91-120 (178)
16 PF09889 DUF2116: Uncharacteri 32.0 1E+02 0.0022 18.3 3.5 27 53-79 10-36 (59)
17 KOG0869 CCAAT-binding factor, 27.8 77 0.0017 22.7 3.0 23 52-74 48-70 (168)
18 PF03617 IBV_3A: IBV 3A protei 24.4 73 0.0016 18.7 1.9 15 35-49 15-29 (57)
19 PF13811 DUF4186: Domain of un 23.3 71 0.0015 21.5 2.0 34 40-73 73-110 (111)
20 PF02944 BESS: BESS motif; In 23.1 87 0.0019 16.3 2.0 21 4-24 10-30 (37)
21 PF08741 YwhD: YwhD family; I 22.9 74 0.0016 22.7 2.1 26 1-26 118-145 (163)
22 PF05497 Destabilase: Destabil 22.2 1.2E+02 0.0025 20.4 2.9 15 61-75 63-77 (119)
23 PF11293 DUF3094: Protein of u 22.0 1.1E+02 0.0024 18.1 2.4 16 10-25 2-17 (55)
24 COG5054 ERV1 Mitochondrial sul 21.6 3.2E+02 0.007 19.8 5.2 33 45-83 130-162 (181)
25 PF04043 PMEI: Plant invertase 21.5 2.3E+02 0.005 18.1 4.9 31 55-85 66-96 (152)
26 PF15047 DUF4533: Protein of u 21.4 3.6E+02 0.0078 20.2 6.1 60 31-92 18-77 (225)
27 PRK09706 transcriptional repre 21.2 2E+02 0.0043 18.8 3.9 34 7-41 94-127 (135)
28 PRK14715 DNA polymerase II lar 20.9 39 0.00084 31.7 0.5 41 41-83 1543-1591(1627)
29 PF14304 CSTF_C: Transcription 20.5 73 0.0016 18.1 1.4 19 8-26 21-39 (46)
30 PRK09458 pspB phage shock prot 20.3 2.3E+02 0.0051 17.6 4.8 33 9-41 33-66 (75)
No 1
>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.7e-25 Score=140.86 Aligned_cols=79 Identities=20% Similarity=0.508 Sum_probs=65.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047434 8 GLDGLPEQDKARMAAMIDHLQLRD-SLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELN 86 (93)
Q Consensus 8 ~~~~l~~~~~~~~~~~~q~~q~k~-~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~ 86 (93)
++.+|++. .++++++++.++.|+ |.+++|++|+.||+|||.+ ++++||++|++|+.|||+||||++.+|.+||+.+.
T Consensus 3 ~~a~l~~~-~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~-~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~ 80 (86)
T KOG3489|consen 3 DLAALDAN-DPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEK-PGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMN 80 (86)
T ss_pred chhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555333 366666776666665 5567999999999999999 66999999999999999999999999999999877
Q ss_pred Hh
Q 047434 87 SQ 88 (93)
Q Consensus 87 ~~ 88 (93)
++
T Consensus 81 ~~ 82 (86)
T KOG3489|consen 81 QG 82 (86)
T ss_pred cc
Confidence 64
No 2
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=99.92 E-value=6.3e-25 Score=133.53 Aligned_cols=64 Identities=31% Similarity=0.783 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434 22 AMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAEL 85 (93)
Q Consensus 22 ~~~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~ 85 (93)
++.++.+++.|..+||+|++.||+|||+++++++|+++|.+||+||++||++++.+|+++|+++
T Consensus 3 ~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~ 66 (66)
T PF02953_consen 3 QLMQEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567788999999999999999999999999999999999999999999999999999999864
No 3
>KOG3479 consensus Mitochondrial import inner membrane translocase, subunit TIM9 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.5e-22 Score=125.81 Aligned_cols=65 Identities=57% Similarity=0.961 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 047434 24 IDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ 88 (93)
Q Consensus 24 ~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~ 88 (93)
.+..++++|+.+||+||+.||..||++|++++|+++|+.|+.+|++||+..++||++||++....
T Consensus 3 ~~~k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~ 67 (83)
T KOG3479|consen 3 QQIKQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAA 67 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999987654
No 4
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.3e-21 Score=122.90 Aligned_cols=69 Identities=17% Similarity=0.509 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047434 18 ARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 87 (93)
Q Consensus 18 ~~~~~~~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~ 87 (93)
..|.++.++..+.+..+++++|++.||+|||++ ||++|+++|..||++|++||||+|+.|++.|..+-+
T Consensus 21 ~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~-PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQ 89 (97)
T KOG1733|consen 21 ELMNQVKQQLAVANAQELVSKISEKCFDKCITK-PGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQ 89 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777778888889999999999999999999 999999999999999999999999999999986443
No 5
>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.1e-21 Score=122.89 Aligned_cols=65 Identities=25% Similarity=0.606 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 047434 24 IDHLQLRDSLRMYNSLVERCFNDCVDN-FTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ 88 (93)
Q Consensus 24 ~q~~q~k~~~~~~~~lt~~Cf~kCv~~-~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~ 88 (93)
+++.+++.+.++||+|+..|++|||+. |..++|+++|.+||||||.||+++|..|+++++++.++
T Consensus 16 ~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~~ 81 (90)
T KOG3480|consen 16 MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQG 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 678899999999999999999999986 88999999999999999999999999999999988754
No 6
>KOG3377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.32 E-value=1.9 Score=30.11 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC----CCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434 29 LRDSLRMYNSLVERCFNDCVDNFTRK----TLQKQEETCVMRCAEKFLKHSMRVGMRFAEL 85 (93)
Q Consensus 29 ~k~~~~~~~~lt~~Cf~kCv~~~~~~----~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~ 85 (93)
+..|.+-+++-+-.|-+|=-.+.+.+ +.-....+|+.+||+.++.+---+.+++.+.
T Consensus 78 l~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~a 138 (143)
T KOG3377|consen 78 LGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEA 138 (143)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455556666666665542222222 3445567899999999999988888888653
No 7
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=89.96 E-value=3.4 Score=28.00 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCC----CchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047434 27 LQLRDSLRMYNSLVERCFNDCVDNFTRKT----LQKQEETCVMRCAEKFLKHSMRVGMRFAE 84 (93)
Q Consensus 27 ~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~----L~~~E~~Ci~nCv~kfld~~~~v~~~~~~ 84 (93)
.++..|.+-+++-+-.|.++=-..++.+. ....=..|+..||++|+..---|..|+.+
T Consensus 68 ~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~ 129 (131)
T PF05811_consen 68 NELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 34555666677777777776554432111 11222579999999999998888888754
No 8
>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.69 E-value=8.3 Score=24.79 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=62.2
Q ss_pred hhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Q 047434 4 NMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNS-LVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRF 82 (93)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~q~~q~k~~~~~~~~-lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~ 82 (93)
+..++|+.-+++....++.+.|++++.+.++.++. -=++|+.+=-+++ +++=..-=..|++|=++--+....|+.+..
T Consensus 2 s~~a~l~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~~~skl-ds~~e~ClsnCV~RfiDts~~I~~r~~~~~ 80 (86)
T KOG3489|consen 2 SDLAALDANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEKPGSKL-DSSEETCLSNCVNRFIDTSLFIVKRLAQMN 80 (86)
T ss_pred CchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777799999999999999999998877554 5689999977654 444477888999999888888877777654
Q ss_pred H
Q 047434 83 A 83 (93)
Q Consensus 83 ~ 83 (93)
+
T Consensus 81 ~ 81 (86)
T KOG3489|consen 81 Q 81 (86)
T ss_pred c
Confidence 4
No 9
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=61.52 E-value=1.1 Score=21.73 Aligned_cols=19 Identities=42% Similarity=1.064 Sum_probs=10.4
Q ss_pred HHHHhcCCCCCCCCchhHhHHHHHH
Q 047434 43 CFNDCVDNFTRKTLQKQEETCVMRC 67 (93)
Q Consensus 43 Cf~kCv~~~~~~~L~~~E~~Ci~nC 67 (93)
||..|... ...|++|-.+|
T Consensus 4 cyrscwk~------g~deetck~~c 22 (22)
T PF08095_consen 4 CYRSCWKA------GHDEETCKERC 22 (22)
T ss_dssp TTTHHHHH------HS-TTHHHHH-
T ss_pred hHHHHHHc------cCcHHHHHhcC
Confidence 55556543 34677787776
No 10
>KOG3377 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.00 E-value=62 Score=22.65 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHH
Q 047434 28 QLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFA 83 (93)
Q Consensus 28 q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~ 83 (93)
-+.-++..|++-.-.||+ + ..+. -..-..||..|+....++...+..-+.
T Consensus 30 hir~mQ~~mfrCaa~Ccd----d-~r~~-~e~v~~ci~~c~~pl~~aQ~~~~~El~ 79 (143)
T KOG3377|consen 30 HIRKMQQAMFRCAAECCD----D-SRAS-EEAVNCCIECCVPPLTKAQQYVQSELG 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHc----c-cccc-HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 344444455555555554 4 2222 223457999999988888777665443
No 11
>PF05892 Tricho_coat: Trichovirus coat protein; InterPro: IPR008879 This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichoviruses and Vitiviruses.; GO: 0019028 viral capsid
Probab=42.04 E-value=53 Score=24.05 Aligned_cols=52 Identities=8% Similarity=0.133 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh---c---CCCCCCCCchhHhHHHHHHHHHHHHHHHHHH
Q 047434 28 QLRDSLRMYNSLVERCFNDC---V---DNFTRKTLQKQEETCVMRCAEKFLKHSMRVG 79 (93)
Q Consensus 28 q~k~~~~~~~~lt~~Cf~kC---v---~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~ 79 (93)
.......+|.+++..|++.= . ++.+-..|++.|.++|.++-.|-+.|-..-+
T Consensus 122 ~~g~~TnL~~Kmp~~g~k~PqV~FDFn~GL~l~~L~~~e~~vIq~ln~RLfrtE~aK~ 179 (194)
T PF05892_consen 122 SMGVYTNLYKKMPKLGGKEPQVMFDFNSGLDLSRLTKEEAKVIQNLNQRLFRTEGAKS 179 (194)
T ss_pred hcchHhHHHHhhHhhcCCCCeEeeecccCcchhhcCHHHHHHHHHHHHHHHHHHHhhh
Confidence 35567788999999998531 1 2345678999999999999999998877654
No 12
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=38.36 E-value=1.1e+02 Score=19.77 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=27.0
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047434 56 LQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 87 (93)
Q Consensus 56 L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~ 87 (93)
.++.+..++..|.+-|-++...+...+..+..
T Consensus 65 ~~~~~~~al~~C~~~y~~a~~~L~~a~~~l~~ 96 (148)
T smart00856 65 KDPRLKAALKDCLELYDDAVDSLEKALEELKS 96 (148)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999998887766553
No 13
>PF06644 ATP11: ATP11 protein; InterPro: IPR010591 This family consists of several eukaryotic ATP11 proteins. The expression of functional F1-ATPase requires two proteins which are encoded by the ATP11 and ATP12 genes []. Atp11p is a molecular chaperone of the mitochondrial matrix that participates in the biogenesis pathway to form F1, which is the catalytic unit of ATP synthase. It binds to the free beta subunits of F1, which prevents the beta subunit from associating with itself in non-productive complex. It also allows for the formation of a (alpha beta)3 hexamer []. ; GO: 0006461 protein complex assembly, 0005739 mitochondrion; PDB: 2P4F_A.
Probab=33.99 E-value=89 Score=23.77 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=21.8
Q ss_pred CCCchhHhHHHHHHHHHHH---------HHHHHHHHHHHH
Q 047434 54 KTLQKQEETCVMRCAEKFL---------KHSMRVGMRFAE 84 (93)
Q Consensus 54 ~~L~~~E~~Ci~nCv~kfl---------d~~~~v~~~~~~ 84 (93)
..|+..|..|+.+|+.||. +-...+.+.|..
T Consensus 213 ~~ls~~eAq~L~~~lQ~FY~~~~~~~~~~~~~~ll~~Fn~ 252 (266)
T PF06644_consen 213 SGLSKQEAQLLVNQLQRFYAAGEEGEDDKERYKLLETFNK 252 (266)
T ss_dssp SS--HHHHHHHHHHHHHHTGGG--SHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHcC
Confidence 3499999999999999999 333456666654
No 14
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=33.15 E-value=28 Score=25.97 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcC----CCCCCCCchhHhHHHHHHHH
Q 047434 38 SLVERCFNDCVD----NFTRKTLQKQEETCVMRCAE 69 (93)
Q Consensus 38 ~lt~~Cf~kCv~----~~~~~~L~~~E~~Ci~nCv~ 69 (93)
.+.+.|-++|-. .-+...++-.|..|+-+||+
T Consensus 131 ~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvn 166 (233)
T KOG3196|consen 131 DILEACKKQLGIKVGETTKDGLFTLEEVECLGACVN 166 (233)
T ss_pred HHHHHHHHHhCccccccccccceeeecchhhhhhcc
Confidence 678888899875 24577788999999999985
No 15
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=33.11 E-value=1.2e+02 Score=20.35 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=25.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047434 57 QKQEETCVMRCAEKFLKHSMRVGMRFAELN 86 (93)
Q Consensus 57 ~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~ 86 (93)
++.+..|+..|.+-|-++...+...+..+.
T Consensus 91 ~~~~~~al~~C~~~y~~a~~~L~~a~~~l~ 120 (178)
T TIGR01614 91 DPRDKSALEDCVELYSDAVDALDKALASLK 120 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999887776655
No 16
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=31.95 E-value=1e+02 Score=18.30 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=23.2
Q ss_pred CCCCchhHhHHHHHHHHHHHHHHHHHH
Q 047434 53 RKTLQKQEETCVMRCAEKFLKHSMRVG 79 (93)
Q Consensus 53 ~~~L~~~E~~Ci~nCv~kfld~~~~v~ 79 (93)
|..+..+|.-|-+.|-+.|..-..+..
T Consensus 10 G~~Ip~~~~fCS~~C~~~~~k~qk~~~ 36 (59)
T PF09889_consen 10 GKPIPPDESFCSPKCREEYRKRQKRMR 36 (59)
T ss_pred CCcCCcchhhhCHHHHHHHHHHHHHHH
Confidence 567778899999999999998887765
No 17
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=27.78 E-value=77 Score=22.70 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=20.3
Q ss_pred CCCCCchhHhHHHHHHHHHHHHH
Q 047434 52 TRKTLQKQEETCVMRCAEKFLKH 74 (93)
Q Consensus 52 ~~~~L~~~E~~Ci~nCv~kfld~ 74 (93)
+..++++....|+.-||.-||-+
T Consensus 48 ~naKIsKDAKE~vQECVSEfISF 70 (168)
T KOG0869|consen 48 ANAKISKDAKETVQECVSEFISF 70 (168)
T ss_pred cccccchHHHHHHHHHHHHHHHH
Confidence 47899999999999999999863
No 18
>PF03617 IBV_3A: IBV 3A protein ; InterPro: IPR005214 The gene product of gene 3 from Infectious bronchitis virus (strain CL190). Currently, the function of this protein remains unknown.
Probab=24.36 E-value=73 Score=18.71 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcC
Q 047434 35 MYNSLVERCFNDCVD 49 (93)
Q Consensus 35 ~~~~lt~~Cf~kCv~ 49 (93)
++-++.=.||+.||-
T Consensus 15 lwcklvlscf~ecvi 29 (57)
T PF03617_consen 15 LWCKLVLSCFRECVI 29 (57)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466788888888873
No 19
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=23.27 E-value=71 Score=21.47 Aligned_cols=34 Identities=12% Similarity=0.536 Sum_probs=25.6
Q ss_pred HHHHHHHhcCC---C-CCCCCchhHhHHHHHHHHHHHH
Q 047434 40 VERCFNDCVDN---F-TRKTLQKQEETCVMRCAEKFLK 73 (93)
Q Consensus 40 t~~Cf~kCv~~---~-~~~~L~~~E~~Ci~nCv~kfld 73 (93)
|..|-..|+.+ + .+..|+..|+.=|..=+.+||+
T Consensus 73 TatCCRgCL~KWH~Ip~gr~Lt~~eq~yiv~vi~~Wi~ 110 (111)
T PF13811_consen 73 TATCCRGCLEKWHGIPKGRELTEEEQAYIVDVIMRWIE 110 (111)
T ss_pred CccchHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 56788888854 3 4899999998877777776664
No 20
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=23.07 E-value=87 Score=16.32 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=15.3
Q ss_pred hhhcccCCCCHHHHHHHHHHH
Q 047434 4 NMLAGLDGLPEQDKARMAAMI 24 (93)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ 24 (93)
|+.+.+..|++..+..+...+
T Consensus 10 Sl~p~~k~L~~~~k~~~k~~i 30 (37)
T PF02944_consen 10 SLLPHMKRLPPKQKLKFKMKI 30 (37)
T ss_pred HhHHHHHhCCHHHHHHHHHHH
Confidence 455678889998888766544
No 21
>PF08741 YwhD: YwhD family; InterPro: IPR014852 The members of this entry are currently uncharacterised. They are around 170 amino acids in length.
Probab=22.89 E-value=74 Score=22.72 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.2
Q ss_pred CChhhhc--ccCCCCHHHHHHHHHHHHH
Q 047434 1 MDKNMLA--GLDGLPEQDKARMAAMIDH 26 (93)
Q Consensus 1 ~~~~~~~--~~~~l~~~~~~~~~~~~q~ 26 (93)
||++|-. .++.|++++++.+..++..
T Consensus 118 MDkslK~~i~vd~md~~sk~~L~~fL~~ 145 (163)
T PF08741_consen 118 MDKSLKRKIIVDHMDDESKKILADFLKE 145 (163)
T ss_pred HHHHhcCeEEhhcCCHHHHHHHHHHHHH
Confidence 7888763 5889999999999888754
No 22
>PF05497 Destabilase: Destabilase; InterPro: IPR008597 Destabilase (3.5.1.44 from EC) is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor XIIIa) between glutamine gamma-carboxamide and the epsilon-amino group of lysine [].; GO: 0003796 lysozyme activity; PDB: 2DQA_B 3AB6_A 3AYQ_A.
Probab=22.22 E-value=1.2e+02 Score=20.43 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHH
Q 047434 61 ETCVMRCAEKFLKHS 75 (93)
Q Consensus 61 ~~Ci~nCv~kfld~~ 75 (93)
-.|..++|..||.-+
T Consensus 63 ~~Ca~~tV~~Ym~ry 77 (119)
T PF05497_consen 63 PYCAERTVQNYMARY 77 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999888643
No 23
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.00 E-value=1.1e+02 Score=18.09 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHHH
Q 047434 10 DGLPEQDKARMAAMID 25 (93)
Q Consensus 10 ~~l~~~~~~~~~~~~q 25 (93)
..|+|+++++....++
T Consensus 2 ~rL~pEDQ~~Vd~yL~ 17 (55)
T PF11293_consen 2 SRLNPEDQQRVDEYLQ 17 (55)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4689999999888775
No 24
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.64 E-value=3.2e+02 Score=19.80 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=24.6
Q ss_pred HHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHH
Q 047434 45 NDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFA 83 (93)
Q Consensus 45 ~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~ 83 (93)
.|=+.. ...+.++.|+.|.+-|- +++.|.++|.
T Consensus 130 ~K~l~~-~ppqv~SRea~~~W~Ce-----vHN~VNekL~ 162 (181)
T COG5054 130 QKLLDV-YPPQVSSREAATTWACE-----VHNKVNEKLG 162 (181)
T ss_pred HHHHhh-CCCCcccHHHHHHHHHH-----HHHHHHHHhC
Confidence 555555 56788999999999994 5677777663
No 25
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=21.50 E-value=2.3e+02 Score=18.08 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=26.7
Q ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434 55 TLQKQEETCVMRCAEKFLKHSMRVGMRFAEL 85 (93)
Q Consensus 55 ~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~ 85 (93)
..++....|+..|.+-|-++...+...+..+
T Consensus 66 ~~~~~~~~~l~~C~~~y~~a~~~l~~a~~~l 96 (152)
T PF04043_consen 66 SKDPNAKQALQDCQELYDDAVDSLQRALEAL 96 (152)
T ss_dssp S-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578889999999999999999988887776
No 26
>PF15047 DUF4533: Protein of unknown function (DUF4533)
Probab=21.38 E-value=3.6e+02 Score=20.25 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 047434 31 DSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQ 92 (93)
Q Consensus 31 ~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~~~~ 92 (93)
++....|.|++. |+.+... .-....-+|.+||....+-.+....-+...++.....++++
T Consensus 18 d~~s~TN~L~el-fN~~m~t-qi~~i~mkEd~~IKd~~eqmi~~~kemQ~~vd~kd~~mq~e 77 (225)
T PF15047_consen 18 DLFSFTNTLTEL-FNSHMNT-QILLIAMKEDSNIKDNFEQMIKIFKEMQSVVDAKDKEMQKE 77 (225)
T ss_pred HHHHHHHHHHHH-HHhcccc-ceeeeeecccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555544 6666654 44556789999999999988888888877777766665543
No 27
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=21.18 E-value=2e+02 Score=18.79 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=19.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434 7 AGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVE 41 (93)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~q~~q~k~~~~~~~~lt~ 41 (93)
.-+..|++++++.+-..+ ....+.+-.+|..+..
T Consensus 94 ~~~~~L~~~~~~~~l~~l-~~~~~~~~~~~~~~~~ 127 (135)
T PRK09706 94 ELFDALPESEQDAQLSEM-RARVENFNKLFEELLK 127 (135)
T ss_pred HHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345677777777766554 3344444455555543
No 28
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=20.90 E-value=39 Score=31.72 Aligned_cols=41 Identities=20% Similarity=0.487 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCCCCchhHhHHHHH--------HHHHHHHHHHHHHHHHH
Q 047434 41 ERCFNDCVDNFTRKTLQKQEETCVMR--------CAEKFLKHSMRVGMRFA 83 (93)
Q Consensus 41 ~~Cf~kCv~~~~~~~L~~~E~~Ci~n--------Cv~kfld~~~~v~~~~~ 83 (93)
-+| ||-.+|.-..|+++=..|-.+ -|+|||++...+..+|.
T Consensus 1543 ~RC--kC~~kyRR~PL~G~C~kCGg~~ilTV~kGsv~KYl~~a~~~~~~y~ 1591 (1627)
T PRK14715 1543 FRC--KCGAKYRRVPLKGKCPKCGSKLILTVSKGAVEKYMPVAKMMAEKYN 1591 (1627)
T ss_pred eee--cCCCccccCCCCCcCcccCCeEEEEEecchHHHHHHHHHHHHHHcC
Confidence 369 999999999999876666543 58999999999998874
No 29
>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A.
Probab=20.48 E-value=73 Score=18.10 Aligned_cols=19 Identities=11% Similarity=0.440 Sum_probs=14.0
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 047434 8 GLDGLPEQDKARMAAMIDH 26 (93)
Q Consensus 8 ~~~~l~~~~~~~~~~~~q~ 26 (93)
.++.|+|++|..+.++.++
T Consensus 21 QI~~LPp~qR~~I~~Lr~q 39 (46)
T PF14304_consen 21 QINALPPDQRQQILQLRQQ 39 (46)
T ss_dssp HHHTS-HHHHTHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4788999999998877543
No 30
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.26 E-value=2.3e+02 Score=17.65 Aligned_cols=33 Identities=15% Similarity=0.562 Sum_probs=24.1
Q ss_pred cCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047434 9 LDGLPEQDKARMAAMIDHL-QLRDSLRMYNSLVE 41 (93)
Q Consensus 9 ~~~l~~~~~~~~~~~~q~~-q~k~~~~~~~~lt~ 41 (93)
-.+|+.++++.++++.+.+ .+++.++.+.+|.|
T Consensus 33 ~~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 33 SQGLSQEEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4679999999999886644 45667777777654
Done!