Query 047434
Match_columns 93
No_of_seqs 100 out of 737
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 19:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dxr_A Mitochondrial import in 100.0 1.1E-32 3.8E-37 176.8 7.8 85 7-91 1-85 (89)
2 3cjh_B Mitochondrial import in 99.9 3.5E-26 1.2E-30 138.4 6.8 61 25-85 3-63 (64)
3 3dxr_B Mitochondrial import in 99.9 1.4E-25 4.6E-30 145.5 9.1 67 24-90 23-90 (95)
4 2bsk_B Mitochondrial import in 99.9 3E-26 1E-30 146.9 6.0 69 22-90 8-77 (90)
5 2bsk_A Mitochondrial import in 99.9 9.6E-26 3.3E-30 144.5 7.0 65 25-89 10-74 (89)
6 3cjh_A Mitochondrial import in 99.9 1.2E-22 4.2E-27 123.0 4.6 56 30-89 3-58 (64)
7 1ter_A Tertiapin; toxin; NMR { 70.1 1.6 5.5E-05 21.0 0.9 10 41-50 12-21 (26)
8 1xg2_B Pectinesterase inhibito 40.7 58 0.002 20.3 4.9 31 57-87 65-95 (153)
9 2zet_C Melanophilin; complex, 40.4 68 0.0023 21.3 5.4 20 7-26 12-31 (153)
10 1x91_A Invertase/pectin methyl 39.0 57 0.002 20.4 4.7 31 57-87 65-95 (153)
11 1hp9_A Kappa-hefutoxin 1; scor 32.6 2.4 8.2E-05 20.5 -2.1 13 57-69 12-24 (26)
12 2p4f_A Similar to SP|P32453 sa 30.8 42 0.0014 25.0 3.3 22 53-74 239-260 (299)
13 1uw0_A DNA ligase III; DNA rep 30.2 51 0.0017 20.9 3.3 22 5-26 75-96 (117)
14 2plx_B Peptide inhibitor; heli 27.1 23 0.00078 16.8 0.9 7 61-67 18-24 (26)
15 2lh0_A Histone chaperone RTT10 26.5 36 0.0012 20.2 1.9 17 9-25 9-25 (70)
16 2dqa_A Lysozyme; enzyme, subst 25.8 57 0.0019 21.2 2.9 16 61-76 64-79 (124)
17 2dmj_A Poly (ADP-ribose) polym 25.4 58 0.002 20.2 2.8 20 6-25 78-97 (106)
18 2ke4_A CDC42-interacting prote 23.3 82 0.0028 19.4 3.2 14 6-19 5-18 (98)
19 3lay_A Zinc resistance-associa 22.8 1.7E+02 0.006 19.7 5.1 19 9-27 65-83 (175)
20 1v9x_A Poly (ADP-ribose) polym 22.7 71 0.0024 20.2 2.9 22 4-25 70-91 (114)
21 2cj4_A Invertase inhibitor; pr 22.4 1.4E+02 0.0049 18.4 4.4 31 57-87 66-97 (150)
22 1zbd_B Rabphilin-3A; G protein 22.3 1.3E+02 0.0043 19.5 4.1 19 7-25 5-23 (134)
23 4h62_V Mediator of RNA polymer 21.9 50 0.0017 16.2 1.6 12 61-72 15-26 (31)
No 1
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-32 Score=176.77 Aligned_cols=85 Identities=44% Similarity=0.903 Sum_probs=67.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047434 7 AGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELN 86 (93)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~ 86 (93)
++|++|+++++++|++++++.++++|+++||+||+.||+|||++|++++|+++|.+||+|||+|||+++.+|++||++++
T Consensus 1 ~~m~~l~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~ 80 (89)
T 3dxr_A 1 GSMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN 80 (89)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Hhhhh
Q 047434 87 SQAAT 91 (93)
Q Consensus 87 ~~~~~ 91 (93)
+.++.
T Consensus 81 ~~~~~ 85 (89)
T 3dxr_A 81 AALGQ 85 (89)
T ss_dssp CC---
T ss_pred HHHhh
Confidence 77654
No 2
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-26 Score=138.37 Aligned_cols=61 Identities=21% Similarity=0.499 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434 25 DHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAEL 85 (93)
Q Consensus 25 q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~ 85 (93)
++.++..+.++||+||+.||+|||++||+++|+++|++||+|||+||||++++|++||+++
T Consensus 3 ~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 3 GENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777889999999999999999999999999999999999999999999999999874
No 3
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-25 Score=145.47 Aligned_cols=67 Identities=24% Similarity=0.636 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 047434 24 IDHLQLRDSLRMYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAA 90 (93)
Q Consensus 24 ~q~~q~k~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~~ 90 (93)
+++.|++.|.++||+||+.||+|||+ +|++++|+++|++||+|||+||||++++|++||+++++..+
T Consensus 23 ~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q~~~ 90 (95)
T 3dxr_B 23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFN 90 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999 68999999999999999999999999999999999887765
No 4
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.93 E-value=3e-26 Score=146.88 Aligned_cols=69 Identities=29% Similarity=0.611 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 047434 22 AMIDHLQLRDSLRMYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAA 90 (93)
Q Consensus 22 ~~~q~~q~k~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~~ 90 (93)
...++.+++.|..+||+||+.||+|||+ +|++++|+++|.+||+|||+||||++.+|++||++..+.+.
T Consensus 8 ~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~ 77 (90)
T 2bsk_B 8 QLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDE 77 (90)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999995 78999999999999999999999999999999999887653
No 5
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=99.92 E-value=9.6e-26 Score=144.49 Aligned_cols=65 Identities=40% Similarity=0.773 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 047434 25 DHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQA 89 (93)
Q Consensus 25 q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~ 89 (93)
+..++++|..+||+||+.||+|||++|++++|+++|++||+|||+|||+++.+|++||+++++.+
T Consensus 10 q~~q~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~ 74 (89)
T 2bsk_A 10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQ 74 (89)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566779999999999999999999999999999999999999999999999999999887543
No 6
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-22 Score=123.04 Aligned_cols=56 Identities=16% Similarity=0.494 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 047434 30 RDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQA 89 (93)
Q Consensus 30 k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~ 89 (93)
..+.++||+||+.||+|||+++ |+++|++||+|||+||||++++|++||+++.+..
T Consensus 3 a~~~~l~~~lt~~Cf~kCv~~~----L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~ 58 (64)
T 3cjh_A 3 ANATELVNKISENCFEKCLTSP----YATRNDACIDQCLAKYMRSWNVISKAYISRIQNA 58 (64)
T ss_dssp --CHHHHHHHHHHHHHHHCCTT----CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHCCCc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3466889999999999999873 9999999999999999999999999999876554
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=70.11 E-value=1.6 Score=20.97 Aligned_cols=10 Identities=20% Similarity=0.820 Sum_probs=8.2
Q ss_pred HHHHHHhcCC
Q 047434 41 ERCFNDCVDN 50 (93)
Q Consensus 41 ~~Cf~kCv~~ 50 (93)
..||+||-.+
T Consensus 12 hmcwkkcgkk 21 (26)
T 1ter_A 12 HMCWKKCGKK 21 (26)
T ss_dssp HHHHHHHHCC
T ss_pred hHHHHHhCcc
Confidence 4799999865
No 8
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=40.73 E-value=58 Score=20.25 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=27.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047434 57 QKQEETCVMRCAEKFLKHSMRVGMRFAELNS 87 (93)
Q Consensus 57 ~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~ 87 (93)
++.+..++..|.+-|-++-..+...+..+..
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~ 95 (153)
T 1xg2_B 65 DPKLKGRYETCSENYADAIDSLGQAKQFLTS 95 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999888877653
No 9
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.44 E-value=68 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=17.2
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q 047434 7 AGLDGLPEQDKARMAAMIDH 26 (93)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~q~ 26 (93)
.+|+.|++++++.|.++++.
T Consensus 12 ~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 12 LDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CCCTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHh
Confidence 47999999999999888773
No 10
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=39.03 E-value=57 Score=20.38 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=27.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047434 57 QKQEETCVMRCAEKFLKHSMRVGMRFAELNS 87 (93)
Q Consensus 57 ~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~ 87 (93)
+..+..++..|.+-|-++-..+...+..+..
T Consensus 65 ~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~ 95 (153)
T 1x91_A 65 DPRSKLAYRSCVDEYESAIGNLEEAFEHLAS 95 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999888876653
No 11
>1hp9_A Kappa-hefutoxin 1; scorpion toxin, gating modifier, voltage-gated potassium channel; NMR {Synthetic} SCOP: j.33.2.1
Probab=32.65 E-value=2.4 Score=20.46 Aligned_cols=13 Identities=46% Similarity=0.879 Sum_probs=8.3
Q ss_pred chhHhHHHHHHHH
Q 047434 57 QKQEETCVMRCAE 69 (93)
Q Consensus 57 ~~~E~~Ci~nCv~ 69 (93)
...|++|-.+|..
T Consensus 12 g~deetck~~cs~ 24 (26)
T 1hp9_A 12 GNDEETCKERCXX 24 (26)
T ss_dssp HSCTTHHHHHC--
T ss_pred cCcHHHHHHHhcc
Confidence 3468888888864
No 12
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138}
Probab=30.81 E-value=42 Score=24.99 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=19.7
Q ss_pred CCCCchhHhHHHHHHHHHHHHH
Q 047434 53 RKTLQKQEETCVMRCAEKFLKH 74 (93)
Q Consensus 53 ~~~L~~~E~~Ci~nCv~kfld~ 74 (93)
.+.|+..|..|+.+|+.||...
T Consensus 239 ~~~ls~~eAq~Lv~~lQ~FY~~ 260 (299)
T 2p4f_A 239 DSNVSLQDAQLLLLNVQRFYGA 260 (299)
T ss_dssp TSSCCHHHHHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHHhCC
Confidence 3579999999999999999976
No 13
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=30.18 E-value=51 Score=20.85 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=17.2
Q ss_pred hhcccCCCCHHHHHHHHHHHHH
Q 047434 5 MLAGLDGLPEQDKARMAAMIDH 26 (93)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~q~ 26 (93)
.+.+++.|.+++|+.+...+..
T Consensus 75 ~i~G~~~L~~eDQ~~I~~~i~~ 96 (117)
T 1uw0_A 75 ELEGWEELEDNEKEQITQHIAD 96 (117)
T ss_dssp SSBSTTTSCHHHHHHHHHHHHH
T ss_pred HCcChHHCCHHHHHHHHHHHHH
Confidence 3456889999999999877643
No 14
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=27.11 E-value=23 Score=16.82 Aligned_cols=7 Identities=29% Similarity=1.061 Sum_probs=5.2
Q ss_pred hHHHHHH
Q 047434 61 ETCVMRC 67 (93)
Q Consensus 61 ~~Ci~nC 67 (93)
..|++||
T Consensus 18 rrcldnc 24 (26)
T 2plx_B 18 RRCLDNC 24 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 4588887
No 15
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=26.48 E-value=36 Score=20.18 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHHHHHHH
Q 047434 9 LDGLPEQDKARMAAMID 25 (93)
Q Consensus 9 ~~~l~~~~~~~~~~~~q 25 (93)
++.|+++.++++.+++.
T Consensus 9 L~~LP~~Lq~kV~aIV~ 25 (70)
T 2lh0_A 9 LDELPESLSRKIGTVVR 25 (70)
T ss_dssp GGGSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 89999999999998875
No 16
>2dqa_A Lysozyme; enzyme, substrate complex, hydrolase; HET: NAG BGC; 1.60A {Tapes japonica}
Probab=25.82 E-value=57 Score=21.22 Aligned_cols=16 Identities=19% Similarity=0.698 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 047434 61 ETCVMRCAEKFLKHSM 76 (93)
Q Consensus 61 ~~Ci~nCv~kfld~~~ 76 (93)
-.|..+||..||.-+.
T Consensus 64 ~~Ca~~tV~~Ym~ry~ 79 (124)
T 2dqa_A 64 INCSSKCVQQYMKRYA 79 (124)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4688999999887554
No 17
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=25.39 E-value=58 Score=20.18 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=16.5
Q ss_pred hcccCCCCHHHHHHHHHHHH
Q 047434 6 LAGLDGLPEQDKARMAAMID 25 (93)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~q 25 (93)
+..++.|.+++|+.|...++
T Consensus 78 i~G~~~L~~eDq~~i~~~~e 97 (106)
T 2dmj_A 78 VDGFSELRWDDQQKVKKTAE 97 (106)
T ss_dssp EETTTTSCHHHHHHHHHHHH
T ss_pred CCChHHCCHHHHHHHHHHHH
Confidence 45688999999999987764
No 18
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.31 E-value=82 Score=19.44 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=11.8
Q ss_pred hcccCCCCHHHHHH
Q 047434 6 LAGLDGLPEQDKAR 19 (93)
Q Consensus 6 ~~~~~~l~~~~~~~ 19 (93)
..|++.|+|++|.+
T Consensus 5 ~~d~s~LPpeqRkk 18 (98)
T 2ke4_A 5 TEDFSHLPPEQQRK 18 (98)
T ss_dssp CSCSSSSCHHHHHH
T ss_pred chhhccCCHHHHHH
Confidence 45789999999887
No 19
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.75 E-value=1.7e+02 Score=19.72 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=13.3
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 047434 9 LDGLPEQDKARMAAMIDHL 27 (93)
Q Consensus 9 ~~~l~~~~~~~~~~~~q~~ 27 (93)
+-+|+++++++++.+.++.
T Consensus 65 ~LnLT~EQq~ql~~I~~e~ 83 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDY 83 (175)
T ss_dssp ---CCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 4679999999999886543
No 20
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=22.67 E-value=71 Score=20.19 Aligned_cols=22 Identities=14% Similarity=0.453 Sum_probs=17.2
Q ss_pred hhhcccCCCCHHHHHHHHHHHH
Q 047434 4 NMLAGLDGLPEQDKARMAAMID 25 (93)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~q 25 (93)
+.+.+++.|.+++|+++...+.
T Consensus 70 ~~I~G~~~L~~eDQ~~I~~~i~ 91 (114)
T 1v9x_A 70 DDVEGIESLRWEDQQKIRKYVE 91 (114)
T ss_dssp GGEETTTTSCHHHHHHHHHHHS
T ss_pred HHCCChHHCCHHHHHHHHHHHH
Confidence 4456789999999999876653
No 21
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=22.37 E-value=1.4e+02 Score=18.38 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=25.0
Q ss_pred chhHhHHHHHHHHHHHHHH-HHHHHHHHHHhH
Q 047434 57 QKQEETCVMRCAEKFLKHS-MRVGMRFAELNS 87 (93)
Q Consensus 57 ~~~E~~Ci~nCv~kfld~~-~~v~~~~~~~~~ 87 (93)
++.+..++..|.+-|-++- ..+...+..+..
T Consensus 66 ~~~~~~al~dC~e~y~~a~~~~L~~a~~~l~~ 97 (150)
T 2cj4_A 66 PAAWKGPLKNCAFSYKVILTASLPEAIEALTK 97 (150)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678899999999998888 588877766543
No 22
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.26 E-value=1.3e+02 Score=19.46 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=14.2
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 047434 7 AGLDGLPEQDKARMAAMID 25 (93)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~q 25 (93)
.+++.|++++++.|.+.++
T Consensus 5 ~dls~LteeE~~~Il~Vl~ 23 (134)
T 1zbd_B 5 RKQEELTDEEKEIINRVIA 23 (134)
T ss_dssp ---CCCCSSHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHh
Confidence 4789999999999887776
No 23
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.93 E-value=50 Score=16.22 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHH
Q 047434 61 ETCVMRCAEKFL 72 (93)
Q Consensus 61 ~~Ci~nCv~kfl 72 (93)
+.=++||++-|.
T Consensus 15 eelldncietfv 26 (31)
T 4h62_V 15 EELLDNCIETFV 26 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345677776654
Done!