Query 047435
Match_columns 724
No_of_seqs 268 out of 1880
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-140 3E-145 1244.0 73.9 688 1-697 76-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-116 6E-121 1021.3 46.1 688 1-698 56-768 (769)
3 PRK10669 putative cation:proto 100.0 5.4E-43 1.2E-47 402.9 36.1 340 1-362 39-390 (558)
4 PRK03562 glutathione-regulated 100.0 9.5E-43 2.1E-47 402.2 36.5 335 1-362 38-381 (621)
5 PRK03659 glutathione-regulated 100.0 4.4E-42 9.6E-47 396.2 37.0 335 1-362 38-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 3.9E-40 8.4E-45 361.2 36.3 344 1-364 39-388 (397)
7 PRK05326 potassium/proton anti 100.0 8.4E-34 1.8E-38 326.5 29.2 343 1-362 39-389 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.3E-31 2.8E-36 281.6 26.6 244 1-263 25-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.2E-35 2.5E-40 327.5 -4.6 341 1-361 29-379 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 9.3E-28 2E-32 239.0 24.3 338 1-361 39-388 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 2.5E-21 5.5E-26 221.2 31.2 318 1-332 47-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 6.2E-20 1.3E-24 208.9 30.2 338 1-360 31-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.8 8.1E-17 1.8E-21 178.6 32.5 342 2-361 40-407 (429)
14 PRK14853 nhaA pH-dependent sod 99.8 1.3E-15 2.8E-20 164.8 33.9 303 30-363 64-398 (423)
15 TIGR00840 b_cpa1 sodium/hydrog 99.7 1.8E-15 3.8E-20 172.6 31.8 320 30-360 66-416 (559)
16 COG3263 NhaP-type Na+/H+ and K 99.7 1.8E-16 3.9E-21 166.1 21.3 328 2-351 41-376 (574)
17 PRK11175 universal stress prot 99.6 1.3E-14 2.7E-19 155.2 21.7 272 387-694 5-300 (305)
18 TIGR00773 NhaA Na+/H+ antiport 99.6 1.2E-12 2.6E-17 139.2 26.1 270 28-328 51-344 (373)
19 KOG4505 Na+/H+ antiporter [Ino 99.5 1.3E-12 2.9E-17 132.9 21.1 316 1-328 47-383 (467)
20 cd01988 Na_H_Antiporter_C The 99.4 3.2E-12 7E-17 118.5 13.4 130 387-531 1-131 (132)
21 PRK14856 nhaA pH-dependent sod 99.2 6E-09 1.3E-13 112.8 25.5 295 30-358 70-429 (438)
22 PRK09560 nhaA pH-dependent sod 99.1 2.2E-08 4.7E-13 107.0 25.4 270 28-328 58-353 (389)
23 PRK14855 nhaA pH-dependent sod 99.1 3.9E-08 8.5E-13 106.2 25.3 264 28-328 62-383 (423)
24 PRK09561 nhaA pH-dependent sod 99.1 3.9E-08 8.5E-13 104.9 25.0 269 29-328 59-351 (388)
25 PRK14854 nhaA pH-dependent sod 99.0 1E-07 2.2E-12 101.3 26.4 270 28-328 55-348 (383)
26 KOG1965 Sodium/hydrogen exchan 99.0 9E-09 1.9E-13 113.9 17.5 314 38-361 107-455 (575)
27 PRK15456 universal stress prot 99.0 4.4E-09 9.6E-14 99.2 12.5 136 386-531 3-141 (142)
28 cd01989 STK_N The N-terminal d 99.0 7E-09 1.5E-13 98.2 13.5 137 387-531 1-143 (146)
29 cd01987 USP_OKCHK USP domain i 98.9 6E-09 1.3E-13 95.7 10.6 121 387-531 1-123 (124)
30 PRK09982 universal stress prot 98.9 8.9E-09 1.9E-13 97.3 10.3 132 387-531 5-137 (142)
31 PRK15005 universal stress prot 98.9 2.4E-08 5.3E-13 94.1 12.3 136 387-531 4-143 (144)
32 PRK15118 universal stress glob 98.8 1.5E-08 3.2E-13 95.8 10.2 134 386-531 4-137 (144)
33 PF06965 Na_H_antiport_1: Na+/ 98.8 2.7E-08 5.9E-13 106.1 13.0 268 30-328 57-351 (378)
34 COG3004 NhaA Na+/H+ antiporter 98.8 1.8E-06 4E-11 88.6 23.4 263 32-328 65-354 (390)
35 PF00582 Usp: Universal stress 98.8 9.9E-09 2.1E-13 94.8 6.3 135 386-531 3-139 (140)
36 PRK10116 universal stress prot 98.7 1.6E-07 3.5E-12 88.3 11.6 133 386-531 4-137 (142)
37 cd00293 USP_Like Usp: Universa 98.6 3E-07 6.5E-12 83.9 11.6 128 387-530 1-129 (130)
38 PRK11175 universal stress prot 98.5 7.4E-07 1.6E-11 95.2 11.4 144 385-536 152-303 (305)
39 cd01988 Na_H_Antiporter_C The 98.3 1.6E-05 3.4E-10 73.3 13.0 126 550-693 1-132 (132)
40 PF00582 Usp: Universal stress 98.2 1E-05 2.2E-10 74.5 10.2 129 549-693 3-140 (140)
41 PRK09982 universal stress prot 98.1 2.3E-05 5.1E-10 73.9 11.1 124 548-693 3-138 (142)
42 cd01989 STK_N The N-terminal d 98.1 3.7E-05 7.9E-10 72.6 12.4 131 550-694 1-145 (146)
43 PRK12460 2-keto-3-deoxyglucona 98.1 0.00024 5.2E-09 74.3 19.0 255 37-364 51-308 (312)
44 PRK15005 universal stress prot 98.1 4.9E-05 1.1E-09 71.5 12.3 127 549-693 3-144 (144)
45 PF03812 KdgT: 2-keto-3-deoxyg 97.9 0.00073 1.6E-08 70.4 19.0 200 1-269 12-221 (314)
46 COG0589 UspA Universal stress 97.9 0.00026 5.6E-09 66.7 13.7 138 386-531 6-150 (154)
47 cd00293 USP_Like Usp: Universa 97.9 0.00022 4.9E-09 64.7 12.3 127 550-692 1-130 (130)
48 PRK15118 universal stress glob 97.8 0.00013 2.8E-09 68.7 9.3 124 548-694 3-139 (144)
49 PRK15456 universal stress prot 97.8 0.00038 8.3E-09 65.4 12.4 126 549-693 3-142 (142)
50 PRK10116 universal stress prot 97.7 0.00016 3.4E-09 67.9 9.6 126 548-693 3-138 (142)
51 cd01987 USP_OKCHK USP domain i 97.7 0.00028 6.1E-09 64.5 10.3 121 550-692 1-123 (124)
52 PRK12652 putative monovalent c 97.4 0.0019 4.1E-08 70.1 12.8 132 386-528 6-146 (357)
53 TIGR00793 kdgT 2-keto-3-deoxyg 97.3 0.0097 2.1E-07 61.8 16.7 85 38-125 52-140 (314)
54 KOG1966 Sodium/hydrogen exchan 97.3 9.4E-05 2E-09 82.3 1.8 312 40-360 109-448 (670)
55 COG0385 Predicted Na+-dependen 97.2 0.33 7.2E-06 51.5 26.1 145 28-185 35-191 (319)
56 PRK12652 putative monovalent c 96.9 0.0096 2.1E-07 64.7 12.1 124 548-682 5-144 (357)
57 PRK10490 sensor protein KdpD; 96.5 0.02 4.4E-07 70.3 12.6 124 383-531 248-372 (895)
58 PF03390 2HCT: 2-hydroxycarbox 96.4 0.29 6.2E-06 53.7 19.5 277 20-334 77-394 (414)
59 TIGR00932 2a37 transporter, mo 96.4 0.088 1.9E-06 55.3 15.5 140 202-348 3-144 (273)
60 PF13593 DUF4137: SBF-like CPA 96.4 1.3 2.9E-05 47.5 24.5 104 30-145 30-141 (313)
61 PRK03562 glutathione-regulated 96.3 0.098 2.1E-06 61.6 16.6 117 196-316 10-127 (621)
62 TIGR00841 bass bile acid trans 96.2 1.3 2.9E-05 46.8 23.3 51 32-83 9-63 (286)
63 PF05684 DUF819: Protein of un 96.2 2.6 5.6E-05 46.5 28.0 110 220-337 245-354 (378)
64 PF03601 Cons_hypoth698: Conse 96.2 0.14 2.9E-06 54.7 15.1 163 199-366 6-176 (305)
65 PRK05274 2-keto-3-deoxyglucona 96.1 0.18 3.8E-06 54.2 15.9 46 39-84 55-100 (326)
66 TIGR00783 ccs citrate carrier 96.1 1.8 3.9E-05 46.6 23.1 264 46-334 40-327 (347)
67 COG0786 GltS Na+/glutamate sym 95.9 1.1 2.4E-05 48.5 20.3 123 202-325 230-360 (404)
68 PRK10669 putative cation:proto 95.9 0.22 4.7E-06 58.1 16.7 134 199-339 14-148 (558)
69 PRK03659 glutathione-regulated 95.8 0.25 5.4E-06 58.0 16.8 115 196-314 10-125 (601)
70 PRK05326 potassium/proton anti 95.7 0.15 3.4E-06 59.3 14.7 118 198-318 13-133 (562)
71 PF05145 AmoA: Putative ammoni 95.7 4 8.6E-05 44.0 25.5 156 196-361 157-315 (318)
72 COG0589 UspA Universal stress 95.6 0.11 2.5E-06 48.4 10.7 131 548-695 5-153 (154)
73 COG0475 KefB Kef-type K+ trans 95.3 0.49 1.1E-05 52.6 16.1 154 196-358 11-170 (397)
74 COG2855 Predicted membrane pro 94.9 0.3 6.5E-06 51.9 12.0 116 208-326 30-145 (334)
75 PF01758 SBF: Sodium Bile acid 94.9 1.4 3E-05 43.5 16.3 101 35-145 2-106 (187)
76 TIGR00698 conserved hypothetic 94.8 0.92 2E-05 48.9 15.7 154 200-359 11-175 (335)
77 COG2205 KdpD Osmosensitive K+ 94.6 0.23 4.9E-06 58.2 11.1 129 383-534 246-374 (890)
78 TIGR00844 c_cpa1 na(+)/h(+) an 94.6 0.6 1.3E-05 55.4 14.6 71 246-318 74-146 (810)
79 PF03616 Glt_symporter: Sodium 94.0 12 0.00025 41.3 24.6 88 215-308 247-340 (368)
80 TIGR00831 a_cpa1 Na+/H+ antipo 93.8 0.66 1.4E-05 53.6 12.8 118 199-321 6-125 (525)
81 PLN03159 cation/H(+) antiporte 93.7 1.3 2.8E-05 54.0 15.7 41 546-586 456-498 (832)
82 TIGR00832 acr3 arsenical-resis 93.7 12 0.00027 40.4 22.5 102 34-145 46-151 (328)
83 TIGR00930 2a30 K-Cl cotranspor 93.5 26 0.00057 43.5 41.2 104 382-507 572-680 (953)
84 PF03977 OAD_beta: Na+-transpo 93.5 0.29 6.4E-06 51.5 8.2 113 246-365 67-179 (360)
85 TIGR03082 Gneg_AbrB_dup membra 93.3 2.1 4.6E-05 40.9 13.4 120 200-326 4-126 (156)
86 TIGR03136 malonate_biotin Na+- 93.0 1.1 2.4E-05 47.9 11.8 136 244-392 101-237 (399)
87 PF03956 DUF340: Membrane prot 92.9 1.6 3.4E-05 43.3 12.0 106 30-145 23-133 (191)
88 COG3180 AbrB Putative ammonia 92.6 17 0.00038 39.2 22.2 155 196-361 190-348 (352)
89 COG1346 LrgB Putative effector 92.3 7.4 0.00016 39.2 15.8 111 235-359 61-171 (230)
90 TIGR00698 conserved hypothetic 91.9 21 0.00046 38.6 21.2 50 30-83 65-115 (335)
91 TIGR00210 gltS sodium--glutama 91.5 27 0.00058 38.8 22.8 91 215-308 245-338 (398)
92 cd01984 AANH_like Adenine nucl 90.8 0.72 1.6E-05 38.9 6.3 47 481-528 35-83 (86)
93 PF03601 Cons_hypoth698: Conse 89.9 15 0.00033 39.2 16.7 51 30-84 59-110 (305)
94 PF03616 Glt_symporter: Sodium 89.2 2.9 6.2E-05 46.0 10.9 115 247-363 66-186 (368)
95 PRK04288 antiholin-like protei 88.7 19 0.00041 36.7 15.4 111 235-359 64-174 (232)
96 PRK10490 sensor protein KdpD; 88.4 3.2 7E-05 51.2 11.7 123 547-693 249-373 (895)
97 PRK15475 oxaloacetate decarbox 88.2 0.59 1.3E-05 49.8 4.4 133 245-392 131-270 (433)
98 COG0025 NhaP NhaP-type Na+/H+ 88.1 10 0.00022 42.6 14.5 123 198-323 13-139 (429)
99 PRK15476 oxaloacetate decarbox 87.9 0.63 1.4E-05 49.6 4.4 111 245-363 131-248 (433)
100 PRK15477 oxaloacetate decarbox 87.9 0.63 1.4E-05 49.6 4.4 111 245-363 131-248 (433)
101 PF06826 Asp-Al_Ex: Predicted 85.9 9.1 0.0002 37.1 11.0 85 25-116 48-136 (169)
102 COG3329 Predicted permease [Ge 85.3 15 0.00032 38.6 12.5 139 215-360 16-158 (372)
103 COG0798 ACR3 Arsenite efflux p 85.3 58 0.0013 35.0 23.2 150 26-184 46-201 (342)
104 COG4651 RosB Kef-type K+ trans 84.9 3.2 6.9E-05 43.4 7.5 131 196-335 11-144 (408)
105 COG3493 CitS Na+/citrate sympo 83.5 73 0.0016 34.7 25.2 282 20-334 94-413 (438)
106 COG1883 OadB Na+-transporting 83.5 0.73 1.6E-05 47.4 2.2 133 245-392 81-214 (375)
107 PF00999 Na_H_Exchanger: Sodiu 83.4 0.12 2.5E-06 57.1 -3.9 112 201-316 6-123 (380)
108 PRK10711 hypothetical protein; 82.3 39 0.00084 34.5 14.0 109 237-359 61-169 (231)
109 TIGR01109 Na_pump_decarbB sodi 82.0 4.7 0.0001 42.6 7.5 113 244-363 59-177 (354)
110 TIGR00659 conserved hypothetic 81.8 59 0.0013 33.1 15.1 82 273-359 87-168 (226)
111 PRK12342 hypothetical protein; 79.8 6.2 0.00013 41.0 7.6 104 554-675 30-145 (254)
112 KOG2310 DNA repair exonuclease 79.1 3 6.5E-05 46.8 5.2 129 483-611 41-197 (646)
113 PRK03359 putative electron tra 78.5 6 0.00013 41.1 7.0 108 554-676 31-149 (256)
114 TIGR00946 2a69 he Auxin Efflux 77.5 29 0.00063 37.2 12.4 112 22-144 202-314 (321)
115 PF03956 DUF340: Membrane prot 77.1 3.7 8E-05 40.7 4.8 48 275-322 57-104 (191)
116 TIGR00210 gltS sodium--glutama 77.1 1.1E+02 0.0025 33.9 16.9 114 247-361 66-184 (398)
117 COG0786 GltS Na+/glutamate sym 77.0 4.9 0.00011 43.7 5.9 117 245-363 66-187 (404)
118 TIGR01625 YidE_YbjL_dupl AspT/ 77.0 31 0.00067 32.9 10.9 86 26-118 49-139 (154)
119 PRK03818 putative transporter; 74.8 38 0.00081 39.5 13.0 84 26-117 56-143 (552)
120 COG3263 NhaP-type Na+/H+ and K 74.5 37 0.0008 37.7 11.7 112 207-322 23-138 (574)
121 PF04172 LrgB: LrgB-like famil 74.0 82 0.0018 31.8 13.5 83 272-359 76-158 (215)
122 COG3180 AbrB Putative ammonia 72.8 1E+02 0.0022 33.5 14.5 120 195-325 10-136 (352)
123 PF03547 Mem_trans: Membrane t 72.2 16 0.00034 40.2 8.9 130 223-361 14-146 (385)
124 COG2985 Predicted permease [Ge 71.4 11 0.00023 42.2 6.9 79 34-120 62-147 (544)
125 COG3969 Predicted phosphoadeno 70.3 11 0.00023 40.2 6.4 57 548-612 27-84 (407)
126 TIGR03802 Asp_Ala_antiprt aspa 70.3 16 0.00034 42.7 8.5 85 26-117 443-531 (562)
127 TIGR00840 b_cpa1 sodium/hydrog 69.0 32 0.00069 40.1 10.7 75 247-323 69-152 (559)
128 PRK03818 putative transporter; 67.9 56 0.0012 38.0 12.4 86 219-305 34-122 (552)
129 TIGR01625 YidE_YbjL_dupl AspT/ 66.4 19 0.0004 34.4 6.7 88 218-305 24-117 (154)
130 COG2855 Predicted membrane pro 65.6 17 0.00037 38.9 6.8 55 22-76 273-327 (334)
131 COG2205 KdpD Osmosensitive K+ 64.6 52 0.0011 39.4 11.0 124 548-694 248-374 (890)
132 KOG1965 Sodium/hydrogen exchan 64.1 14 0.0003 42.3 6.2 74 247-324 102-184 (575)
133 PF01012 ETF: Electron transfe 62.6 17 0.00036 34.8 5.8 94 559-664 15-115 (164)
134 TIGR02432 lysidine_TilS_N tRNA 62.1 51 0.0011 32.1 9.4 36 550-585 1-36 (189)
135 PRK12460 2-keto-3-deoxyglucona 60.9 56 0.0012 34.8 9.6 49 35-83 196-244 (312)
136 PRK05253 sulfate adenylyltrans 58.5 36 0.00077 36.3 7.9 36 549-584 28-63 (301)
137 TIGR02039 CysD sulfate adenyly 58.0 31 0.00067 36.6 7.2 35 550-584 21-55 (294)
138 PF01171 ATP_bind_3: PP-loop f 57.8 41 0.00088 32.8 7.7 95 550-652 1-107 (182)
139 TIGR03802 Asp_Ala_antiprt aspa 56.4 1.3E+02 0.0028 35.2 12.7 93 216-311 416-514 (562)
140 PF05145 AmoA: Putative ammoni 56.3 1E+02 0.0022 33.2 11.0 132 219-361 3-136 (318)
141 PRK04972 putative transporter; 54.0 98 0.0021 36.1 11.1 76 32-115 61-140 (558)
142 PF05684 DUF819: Protein of un 53.7 1.3E+02 0.0028 33.3 11.5 97 242-344 52-152 (378)
143 TIGR00832 acr3 arsenical-resis 52.7 2.9E+02 0.0063 29.8 13.9 98 256-359 54-156 (328)
144 COG2086 FixA Electron transfer 51.9 76 0.0017 33.0 8.7 108 554-678 32-150 (260)
145 PF05982 DUF897: Domain of unk 50.9 67 0.0014 34.4 8.2 93 2-112 190-287 (327)
146 PRK04972 putative transporter; 50.7 60 0.0013 37.9 8.7 86 25-116 437-525 (558)
147 cd01984 AANH_like Adenine nucl 50.7 19 0.0004 30.1 3.5 33 551-584 1-33 (86)
148 COG4827 Predicted transporter 50.0 1.2E+02 0.0026 30.2 9.1 44 31-74 9-55 (239)
149 PRK09903 putative transporter 50.0 1.6E+02 0.0034 31.5 11.3 88 22-118 193-281 (314)
150 COG0679 Predicted permeases [G 49.2 3.4E+02 0.0073 29.0 13.7 142 217-366 11-154 (311)
151 PF13593 DUF4137: SBF-like CPA 48.6 1.7E+02 0.0038 31.3 11.3 92 218-312 7-99 (313)
152 PRK12911 bifunctional preprote 48.4 2.9E+02 0.0064 35.3 14.1 26 159-184 1039-1064(1403)
153 PF02040 ArsB: Arsenical pump 47.8 4.5E+02 0.0097 29.5 16.3 39 106-144 116-154 (423)
154 PRK09903 putative transporter 46.7 3.9E+02 0.0084 28.5 14.1 135 216-360 173-310 (314)
155 PRK12933 secD preprotein trans 45.7 3E+02 0.0066 32.3 13.1 26 159-184 571-596 (604)
156 PRK12563 sulfate adenylyltrans 45.7 46 0.001 35.6 6.2 35 550-584 39-73 (312)
157 PF09930 DUF2162: Predicted tr 44.9 3.2E+02 0.0069 27.8 11.7 48 32-81 4-55 (224)
158 PF03547 Mem_trans: Membrane t 44.3 1.7E+02 0.0037 32.0 10.8 88 216-304 244-336 (385)
159 cd01992 PP-ATPase N-terminal d 43.4 1.3E+02 0.0027 29.1 8.6 35 550-584 1-35 (185)
160 PF08659 KR: KR domain; Inter 43.1 2E+02 0.0043 27.8 9.9 86 554-652 4-92 (181)
161 TIGR00808 malonate_madM malona 42.9 46 0.00099 33.0 5.0 44 42-85 90-133 (254)
162 KOG1288 Amino acid transporter 40.5 7.1E+02 0.015 29.8 20.4 98 386-505 561-663 (945)
163 KOG0573 Asparagine synthase [A 37.7 1.9E+02 0.0042 32.3 9.3 103 512-625 224-327 (520)
164 PF06826 Asp-Al_Ex: Predicted 37.2 2.7E+02 0.0059 26.9 9.6 89 214-305 22-116 (169)
165 PRK05812 secD preprotein trans 36.4 4.5E+02 0.0097 30.3 12.6 28 157-184 461-488 (498)
166 PF07905 PucR: Purine cataboli 35.6 3E+02 0.0066 24.8 9.3 96 416-522 23-120 (123)
167 PF03652 UPF0081: Uncharacteri 34.7 1E+02 0.0022 28.6 6.0 55 480-535 37-96 (135)
168 COG1597 LCB5 Sphingosine kinas 34.2 1.1E+02 0.0024 32.6 6.9 68 601-674 22-90 (301)
169 COG3763 Uncharacterized protei 33.5 1.9E+02 0.0041 23.6 6.3 38 158-198 9-46 (71)
170 cd01713 PAPS_reductase This do 33.5 1.8E+02 0.0039 27.1 7.9 33 550-583 1-33 (173)
171 COG5505 Predicted integral mem 33.1 6.3E+02 0.014 27.0 26.8 84 247-335 275-358 (384)
172 COG1646 Predicted phosphate-bi 33.0 1.3E+02 0.0028 30.7 6.6 62 470-534 16-79 (240)
173 TIGR03136 malonate_biotin Na+- 31.9 7.2E+02 0.016 27.3 18.3 74 196-273 233-306 (399)
174 PF02601 Exonuc_VII_L: Exonucl 31.3 1.5E+02 0.0032 31.8 7.4 34 548-583 14-48 (319)
175 cd01993 Alpha_ANH_like_II This 30.5 2E+02 0.0044 27.5 7.7 36 550-585 1-38 (185)
176 PRK06806 fructose-bisphosphate 29.9 2.3E+02 0.005 29.9 8.4 107 468-578 18-130 (281)
177 COG0385 Predicted Na+-dependen 29.7 7.3E+02 0.016 26.7 13.3 106 248-359 41-150 (319)
178 PF03686 UPF0146: Uncharacteri 27.1 99 0.0021 28.4 4.3 37 470-506 71-107 (127)
179 PF05982 DUF897: Domain of unk 27.1 4.3E+02 0.0093 28.5 9.7 107 253-360 32-141 (327)
180 TIGR02185 Trep_Strep conserved 26.7 6.2E+02 0.013 24.9 14.7 24 276-299 161-184 (189)
181 PF03812 KdgT: 2-keto-3-deoxyg 26.6 6E+02 0.013 27.2 10.6 52 247-300 47-98 (314)
182 COG1570 XseA Exonuclease VII, 26.3 1.1E+02 0.0023 34.3 5.3 49 603-652 151-204 (440)
183 PF02355 SecD_SecF: Protein ex 25.7 6.5E+02 0.014 24.8 13.4 29 156-184 161-189 (189)
184 KOG1650 Predicted K+/H+-antipo 25.7 7.1E+02 0.015 30.4 12.5 63 35-104 314-376 (769)
185 COG3748 Predicted membrane pro 25.4 6.7E+02 0.015 26.9 10.4 40 247-287 226-265 (407)
186 PF01758 SBF: Sodium Bile acid 25.3 6.3E+02 0.014 24.5 11.8 72 255-326 8-82 (187)
187 COG2431 Predicted membrane pro 25.3 2.5E+02 0.0054 29.4 7.2 64 30-100 131-199 (297)
188 COG0037 MesJ tRNA(Ile)-lysidin 25.3 7E+02 0.015 26.0 11.3 96 387-505 23-131 (298)
189 PF09605 Trep_Strep: Hypotheti 24.4 6.8E+02 0.015 24.5 15.2 123 172-299 42-181 (186)
190 TIGR02230 ATPase_gene1 F0F1-AT 24.3 1.7E+02 0.0037 25.7 5.1 37 67-103 51-88 (100)
191 TIGR00841 bass bile acid trans 23.8 6.9E+02 0.015 26.2 10.8 103 251-360 14-120 (286)
192 PF01171 ATP_bind_3: PP-loop f 23.6 4.9E+02 0.011 25.1 9.0 36 387-424 1-36 (182)
193 KOG2722 Predicted membrane pro 23.4 1.4E+02 0.0031 32.5 5.3 115 232-353 39-160 (408)
194 PRK12737 gatY tagatose-bisphos 23.4 2.6E+02 0.0057 29.5 7.4 66 469-537 19-86 (284)
195 PF02184 HAT: HAT (Half-A-TPR) 22.7 53 0.0011 22.5 1.3 12 712-723 6-17 (32)
196 PRK10660 tilS tRNA(Ile)-lysidi 22.5 6E+02 0.013 28.6 10.5 58 549-612 16-74 (436)
197 cd01985 ETF The electron trans 22.5 4.5E+02 0.0096 25.3 8.5 92 558-664 18-116 (181)
198 TIGR02057 PAPS_reductase phosp 21.9 6.9E+02 0.015 25.3 9.9 24 549-572 26-49 (226)
199 PF02844 GARS_N: Phosphoribosy 21.7 78 0.0017 27.9 2.5 24 480-503 48-71 (100)
200 PRK04148 hypothetical protein; 21.4 1.3E+02 0.0028 28.0 4.0 36 472-507 80-115 (134)
201 PRK07102 short chain dehydroge 20.9 5.1E+02 0.011 25.8 8.9 79 558-651 8-86 (243)
202 PF11340 DUF3142: Protein of u 20.8 68 0.0015 31.4 2.2 47 658-713 79-125 (181)
203 PRK00109 Holliday junction res 20.7 2.3E+02 0.005 26.4 5.7 53 482-535 42-98 (138)
204 PRK10263 DNA translocase FtsK; 20.7 5.3E+02 0.011 33.3 10.1 8 560-567 616-623 (1355)
205 COG0175 CysH 3'-phosphoadenosi 20.6 3.4E+02 0.0074 28.2 7.5 21 631-653 132-152 (261)
206 KOG2575 Glucosyltransferase - 20.5 1.2E+03 0.026 26.0 13.1 149 200-367 196-351 (510)
207 PRK12857 fructose-1,6-bisphosp 20.4 2.9E+02 0.0063 29.2 7.0 65 470-537 20-86 (284)
208 PF07854 DUF1646: Protein of u 20.2 1E+03 0.023 25.6 10.7 25 218-242 145-172 (347)
209 smart00046 DAGKc Diacylglycero 20.1 2E+02 0.0043 26.0 5.1 46 629-675 38-86 (124)
210 PF01507 PAPS_reduct: Phosphoa 20.1 2.4E+02 0.0052 26.5 6.0 26 550-575 1-26 (174)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.3e-140 Score=1243.98 Aligned_cols=688 Identities=36% Similarity=0.621 Sum_probs=624.2
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
||++|||++||+++.+.+.+||.++.+.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++||++|+++++
T Consensus 76 aGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~ 155 (832)
T PLN03159 76 GGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSF 155 (832)
T ss_pred HHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999998899999999888899999999999999999999999999999999999999999999999998888
Q ss_pred HhhhcCCCc--chhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccCC-chh
Q 047435 81 ILSDYTPGV--ERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNKS-LGH 155 (724)
Q Consensus 81 ~l~~~~~~~--~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~~-~~~ 155 (724)
+++...... ....+++ |+++|.||+|+++++|+|+|+++++.||+++++++++|+++|+++++ . ....+. ...
T Consensus 156 ~l~~~~~~~~~~~~~l~~--g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~ 233 (832)
T PLN03159 156 IFHQVSRNVHQGTFILFL--GVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLA 233 (832)
T ss_pred HHhhcccccchhHHHHHH--HHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 774321111 1334555 99999999999999999999999999999999999999999999988 5 443322 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChh
Q 047435 156 KAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLG 235 (724)
Q Consensus 156 ~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~ 235 (724)
++|.+++.++|++++++++||++.|+.++++++++.++.++.++++++++++++++.+|+|+++|||++|+++|+. |++
T Consensus 234 ~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~ 312 (832)
T PLN03159 234 SLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLG 312 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chH
Confidence 5677778888888999999999999999999888889999999999999999999999999999999999999984 899
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhh
Q 047435 236 SALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVK 315 (724)
Q Consensus 236 ~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~k 315 (724)
+++.+|++++++++|+|+||+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+|
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~k 392 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTK 392 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999888654456666777888899999999999999999999999999999999
Q ss_pred hhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhccccccCCCCCceeEEEEeecc
Q 047435 316 GINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQTRCKVTEDKQMRTLQTTPISSELRIFCGVHFE 395 (724)
Q Consensus 316 G~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~~~~~~~~~~~r~i~~~~~~~elrILvcv~~~ 395 (724)
|+++++++++|++ .|+++++.|++++++++++|.+.+|++.++|+|+||+.. |++|++|+.++++|+|||+|+|++
T Consensus 393 G~~~Lii~~ig~~-~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~---~~~r~i~~~~~~~elriL~cv~~~ 468 (832)
T PLN03159 393 GLVEMIVLNVGRD-QEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVG---YKRRTIQRSKHDAELRMLVCVHTP 468 (832)
T ss_pred cHHHHHHHHHHHh-cCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhcc---ccccccccCCCCCceeEEEEeccC
Confidence 9999999999999 999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred CChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhc----ccccchHHHHHHHHHhhhcCCCCeEEE
Q 047435 396 GNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRL----IREDSTYRIMHAAEKQFRSSDVPFTIL 471 (724)
Q Consensus 396 ~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~----~~~~~~~~i~~af~~~~~~~~~~v~v~ 471 (724)
+|++++++|++++++++++|.++|++||||+++|++|.+++|+.++... .+..++|+++++|+.|++++ ++++++
T Consensus 469 ~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~ 547 (832)
T PLN03159 469 RNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQ 547 (832)
T ss_pred CcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEE
Confidence 9999999999999999999999999999999999999999998764321 12345899999999999764 689999
Q ss_pred EeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC--CCc---c-cchhHHHHHhhcCCCceEEEecCCCCCCCccccC
Q 047435 472 PYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ--GRT---T-NLQNFDMNIQAHAPCTVGLLVDKSSTTGHFYSIG 545 (724)
Q Consensus 472 ~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~--g~~---~-~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~~~~ 545 (724)
++|++||+++||+|||++|+|+++++||+||||+|+ |++ + .+|.+|+|||++||||||||||||.....+.+..
T Consensus 548 ~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~ 627 (832)
T PLN03159 548 PLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASN 627 (832)
T ss_pred EEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCcccccccc
Confidence 999999999999999999999999999999999998 654 3 8999999999999999999999996532222233
Q ss_pred CcceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccc-------------------cchhhhhhhHHHHHH
Q 047435 546 HFTYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQ-------------------SEYDCERHLDEIAIN 606 (724)
Q Consensus 546 ~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~-------------------~~~~~~~~~d~~~i~ 606 (724)
...++|+++|+|||||||||+||+|||+||++++||+||++.+... +.++.|+++||++++
T Consensus 628 ~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ 707 (832)
T PLN03159 628 QVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYIN 707 (832)
T ss_pred ccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999642111 112568889999999
Q ss_pred HHHhhccCCCceEEEEEEecChHHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCc
Q 047435 607 EFITNNISNACVACRQVIAKNTTEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGM 686 (724)
Q Consensus 607 ~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~ 686 (724)
||+.++..+++|.|+||+|+|++|+.++||+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+|| +++
T Consensus 708 ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~-~~~ 786 (832)
T PLN03159 708 EFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AAT 786 (832)
T ss_pred HHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCC-CCc
Confidence 9999998888999999999999999999999999999999999998889999999999999999999999999999 999
Q ss_pred ccEEEEEeccC
Q 047435 687 TSVLVIQCGIG 697 (724)
Q Consensus 687 ~svLvvqq~~~ 697 (724)
+||||||||+.
T Consensus 787 ~SVLVvQQ~~~ 797 (832)
T PLN03159 787 VSVLVVQQYVG 797 (832)
T ss_pred eeEEEEEeecc
Confidence 99999999985
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-116 Score=1021.33 Aligned_cols=688 Identities=34% Similarity=0.554 Sum_probs=623.4
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
|||+|||+.+|+++.+.+.+||.++...+++++.+|+++++|+.|+|+|.+.++|++|++..||+.++++|+..|.++..
T Consensus 56 ~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~ 135 (769)
T KOG1650|consen 56 AGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAF 135 (769)
T ss_pred HHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HhhhcCC--Cc-----chhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccC
Q 047435 81 ILSDYTP--GV-----ERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNK 151 (724)
Q Consensus 81 ~l~~~~~--~~-----~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~ 151 (724)
.+..... .. +.+..++ ..++|.||||+++++|.|+|++|+|+||+|+++++++|+++|+++++ . ..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~ 213 (769)
T KOG1650|consen 136 LLSDTKADKEDGALFLPFEILFI--LSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSEL 213 (769)
T ss_pred hccccccccccccccccHHHHHH--HHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccC
Confidence 7643322 11 1245555 88999999999999999999999999999999999999999998888 5 44332
Q ss_pred C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHhhc
Q 047435 152 S--LGHKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLG-VSFALGALIVGLIV 228 (724)
Q Consensus 152 ~--~~~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G-~~~~lGaFlaGl~~ 228 (724)
. .....|.+...++|++++.+++||.+.|+.||+|+++++++.|...++..++.++.+++.++ +|+++|||+.|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~i 293 (769)
T KOG1650|consen 214 KLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAI 293 (769)
T ss_pred CCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEec
Confidence 2 34567888888889999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred CCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Q 047435 229 PAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILF 308 (724)
Q Consensus 229 ~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l 308 (724)
|++||+++++.||+|++.+++|+|+||+.+|+++|+..+.. |......+...+++|++++..++.++|+|++|++.+
T Consensus 294 P~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l 370 (769)
T KOG1650|consen 294 PHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLAL 370 (769)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 99999999999999999999999999999999999998875 667778888999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhccccccCCCCCceeE
Q 047435 309 SFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQTRCKVTEDKQMRTLQTTPISSELRI 388 (724)
Q Consensus 309 g~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~~~~~~~~~~~r~i~~~~~~~elrI 388 (724)
|++||+||.+|++.++.+++ .|+++++.|++++++++++|.++||+++.+|||.|++.. |++|++|+.++++|+||
T Consensus 371 ~~lm~~kgl~el~~~~~~~~-~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~---y~~~~i~~~~~~~~Lri 446 (769)
T KOG1650|consen 371 GLLMSTKGLVELIVLNTGLD-RKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHG---YKKRGIQHLKPNSELRI 446 (769)
T ss_pred HHHHHhhhHHHHHHHHHHhh-cCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCc---eEeehhhhcCCCCceEE
Confidence 99999999999999999999 999999999999999999999999999999999999998 99999999999999999
Q ss_pred EEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhh-hc-ccccchHHHHHHHHHhhhcCCC
Q 047435 389 FCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKL-RL-IREDSTYRIMHAAEKQFRSSDV 466 (724)
Q Consensus 389 Lvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~-~~-~~~~~~~~i~~af~~~~~~~~~ 466 (724)
|.|+|+++|+++++++++++.+++++|..++++|+||+.+|+.|++++|+.++. .. .....++++..+|+.|++.+.+
T Consensus 447 l~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~ 526 (769)
T KOG1650|consen 447 LTCLHGPENISGIINLLELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQE 526 (769)
T ss_pred EEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCC
Confidence 999999999999999999999998789999999999999999999999987654 32 2334466889999999975446
Q ss_pred CeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-C-Cc---c-cchhHHHHHhhcCCCceEEEecCCCCCCC
Q 047435 467 PFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-G-RT---T-NLQNFDMNIQAHAPCTVGLLVDKSSTTGH 540 (724)
Q Consensus 467 ~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g-~~---~-~~~~~~~~Vl~~ApCsVgilVdrg~~~~~ 540 (724)
.+.++++|+++|+.+||+|||.+|.++++++|++|||++|+ | .. + .+|.+|++|+++|||||||+||||..+..
T Consensus 527 ~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~ 606 (769)
T KOG1650|consen 527 GVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSG 606 (769)
T ss_pred cEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCccccc
Confidence 79999999999999999999999999999999999999998 4 33 3 79999999999999999999999821111
Q ss_pred ccccCCcceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccccc---chhhhhhhHHHHHHHH-HhhccCCC
Q 047435 541 FYSIGHFTYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQS---EYDCERHLDEIAINEF-ITNNISNA 616 (724)
Q Consensus 541 ~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~---~~~~~~~~d~~~i~~~-~~~~~~~~ 616 (724)
........++|+++|+||+||||||++++||++||++++||+||++++...+ ..++++.+|++..+++ +..+..+.
T Consensus 607 ~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 686 (769)
T KOG1650|consen 607 VTQKRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNL 686 (769)
T ss_pred ceecccceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchh
Confidence 1122336789999999999999999999999999999999999997532221 1367788888888888 65665667
Q ss_pred ceEEE-EEEecChHHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEEec
Q 047435 617 CVACR-QVIAKNTTEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQCG 695 (724)
Q Consensus 617 ~v~y~-e~~v~~~~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvqq~ 695 (724)
++.|. ||.|.|+.||.++++++.+||||++|||+++.+++.++|+++|+||||||+|||.|+|+|| .++.||||+|||
T Consensus 687 ~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~-~~~~svlvvqq~ 765 (769)
T KOG1650|consen 687 DIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDF-SSKVSVLVVQQQ 765 (769)
T ss_pred hhhhhhHHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchhcccCccccccCcccccccc-CccceEEEEEee
Confidence 78888 6999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCC
Q 047435 696 IGS 698 (724)
Q Consensus 696 ~~~ 698 (724)
.+.
T Consensus 766 ~~~ 768 (769)
T KOG1650|consen 766 LYS 768 (769)
T ss_pred ecC
Confidence 864
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=5.4e-43 Score=402.89 Aligned_cols=340 Identities=17% Similarity=0.218 Sum_probs=290.9
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
+|+++||+++|..+ ..+.++.++++|++++||.+|+|+|++.+++.++.++..++.++++|+++++++++
T Consensus 39 aGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (558)
T PRK10669 39 AGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMALSA 108 (558)
T ss_pred HHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999865 35678999999999999999999999999999888888888899999999988887
Q ss_pred HhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hhc----cCCc-
Q 047435 81 ILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVF----NKSL- 153 (724)
Q Consensus 81 ~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~----~~~~- 153 (724)
.++..+ ..++.+ |+++|.||++++.++|+|+|+++++.||+++++++++|+++|+++++ . +.. +..+
T Consensus 109 ~~~~~~----~~al~l--g~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~ 182 (558)
T PRK10669 109 VLGWSL----MTGIVF--GLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGF 182 (558)
T ss_pred HhCCCH----HHHHHH--HHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcch
Confidence 776433 556667 99999999999999999999999999999999999999999988877 4 321 1111
Q ss_pred h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHhhc
Q 047435 154 G----HKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGAL-TDMLGVSFALGALIVGLIV 228 (724)
Q Consensus 154 ~----~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~-~~~~G~~~~lGaFlaGl~~ 228 (724)
. ...+.++..++++++..++.|++++|+.++.++.+ .+|.++..++++++++++. ++.+|+|+++|||++|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l 261 (558)
T PRK10669 183 ATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVL 261 (558)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 1 12345556667777888899999999999887643 5778888788888877764 6999999999999999999
Q ss_pred CCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Q 047435 229 PAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILF 308 (724)
Q Consensus 229 ~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l 308 (724)
|+. |+++++.+...++ .++|+|+||+++|+++|+..+.+. +..+..++++.+++|++++++.++++|+|+++++.+
T Consensus 262 ~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~--~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~ 337 (558)
T PRK10669 262 NES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ--PLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTI 337 (558)
T ss_pred hCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 986 7888888877776 689999999999999999877542 334455677789999999999999999999999999
Q ss_pred HHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047435 309 SFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKP 362 (724)
Q Consensus 309 g~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p 362 (724)
|++|++||+++++++.++++ .|+++++.|+++++++++|++++|++.++..+.
T Consensus 338 gl~l~~~Gef~lii~~~~~~-~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~ 390 (558)
T PRK10669 338 AASLAQIGEFAFILAGLGMA-LNLLPQAGQNLVLAGAILSIMLNPVLFTLLERY 390 (558)
T ss_pred HHHHhcccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999 999999999999999999999999888887553
No 4
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=9.5e-43 Score=402.25 Aligned_cols=335 Identities=16% Similarity=0.223 Sum_probs=279.2
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
+|+++||+++|+++ ..+.++.++++|++++||++|+|+|++.+++.+|+++.+|..++++|+++++.+++
T Consensus 38 aGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~ 107 (621)
T PRK03562 38 AGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCM 107 (621)
T ss_pred HHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999875 35678999999999999999999999999999999999999999999999888887
Q ss_pred HhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hhcc-CC-chhH
Q 047435 81 ILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFN-KS-LGHK 156 (724)
Q Consensus 81 ~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~-~~-~~~~ 156 (724)
+++..+ ..++++ |.+++.||++++.++|+|+|+++++.||.++++++++|+++|+++++ . ++.. .. ....
T Consensus 108 ~~g~~~----~~al~i--g~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~ 181 (621)
T PRK03562 108 LLGLRW----QVALLI--GLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGA 181 (621)
T ss_pred HhCCCH----HHHHHH--HHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhH
Confidence 776543 567777 99999999999999999999999999999999999999999999888 4 4322 11 1112
Q ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC
Q 047435 157 -AESSLCLI----GLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAG 231 (724)
Q Consensus 157 -l~~~~~~~----~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~ 231 (724)
++.++..+ +++++..++.||+++|+.+.. .+|.+...+++++++++++++.+|+|+++|||++|+++++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~ 256 (621)
T PRK03562 182 FALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASS 256 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC
Confidence 22222222 222333456666666665542 35778888888999999999999999999999999999986
Q ss_pred CChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Q 047435 232 PPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFI 311 (724)
Q Consensus 232 ~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~ 311 (724)
++++.++++++++ .++|+|+||+++||++|+..+... ++.++.++++.+++|++++++.++++|+++++++.+|++
T Consensus 257 -~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~--~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~ 332 (621)
T PRK03562 257 -EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN--PLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVL 332 (621)
T ss_pred -ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 7899999999999 699999999999999999887542 444455666789999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047435 312 LNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKP 362 (724)
Q Consensus 312 m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p 362 (724)
|+++|++++++++++.+ .|+++++.|+.+++++++|++++| ++..+|++
T Consensus 333 L~~~Gef~~vl~~~a~~-~~~i~~~~~~~lv~~v~lS~~~tP-~l~~~~~~ 381 (621)
T PRK03562 333 LGQGGEFAFVVFGAAQM-ANVLEPEWAKLLTLAVALSMAATP-LLLVLLDR 381 (621)
T ss_pred HhccccHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHhhhH
Confidence 99999999999999999 999999999999998877655555 44444543
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=4.4e-42 Score=396.18 Aligned_cols=335 Identities=18% Similarity=0.219 Sum_probs=278.7
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
+|+++||+++|+++ ..+.+..++++|++++||.+|+|+|++.+++.+|+++.+|..++++|+++++.+++
T Consensus 38 aGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~ 107 (601)
T PRK03659 38 AGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLM 107 (601)
T ss_pred HHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999875 34668899999999999999999999999999999999999999999988777766
Q ss_pred HhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccCCch-hHH
Q 047435 81 ILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNKSLG-HKA 157 (724)
Q Consensus 81 ~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~~~~-~~l 157 (724)
+++..+ ..++++ |++++.||++++.++|+|+|+++++.||++++.++++|+.+|+++++ . +....... .+.
T Consensus 108 ~~g~~~----~~a~~~--g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~ 181 (601)
T PRK03659 108 LTDFSW----QAAVVG--GIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWM 181 (601)
T ss_pred HHccCH----HHHHHH--HHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 654332 566677 99999999999999999999999999999999999999999999888 4 43222111 111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh
Q 047435 158 ---ESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPL 234 (724)
Q Consensus 158 ---~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~ 234 (724)
+.++..++++++..++.||+++|+.+. +.+|.++..+++++++++++++.+|+|+++|||++|+++++. ++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~ 255 (601)
T PRK03659 182 KIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAES-EY 255 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ch
Confidence 112222222233345566666665443 246788888888999999999999999999999999999996 78
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhh
Q 047435 235 GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNV 314 (724)
Q Consensus 235 ~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~ 314 (724)
+++++++++++ .++|+|+||+++||++|+..+.+. |+.++.++++.+++|++++++.++++|+++++++.+|++|++
T Consensus 256 ~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~--~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~ 332 (601)
T PRK03659 256 RHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH--LLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQ 332 (601)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 99999999998 699999999999999999887643 455566677788999999999999999999999999999999
Q ss_pred hhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047435 315 KGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKP 362 (724)
Q Consensus 315 kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p 362 (724)
+|+++++++..+.+ .|+++++.|+.+++++++|++ .+|++..+|+|
T Consensus 333 ~Gef~~vl~~~a~~-~g~i~~~~~~~lv~~v~ls~~-~tP~l~~~~~~ 378 (601)
T PRK03659 333 GGEFAFVLFSAASS-QRLLQGDQMALLLVVVTLSMM-TTPLLMKLIDK 378 (601)
T ss_pred cccHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHH-HHHHHHHHhHH
Confidence 99999999999999 999999999999888888764 56666666655
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=361.18 Aligned_cols=344 Identities=20% Similarity=0.315 Sum_probs=293.3
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhH-HHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKH-TWFITIACLVIPYMIAMFLS 79 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~-~~~i~~~~~lip~~~g~~~~ 79 (724)
||+++||.+++... +.++.++.++++|++++||.+|+|+|++.+||++|+ +...+..++..|++++....
T Consensus 39 aGiilGp~~~~~~~---------~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (397)
T COG0475 39 AGIILGPWGLLLII---------ESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLL 109 (397)
T ss_pred HHHhcCcccccccC---------CchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHH
Confidence 69999996655533 368999999999999999999999999999999999 88888899999988886554
Q ss_pred HH-hhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccCCc--h
Q 047435 80 RI-LSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNKSL--G 154 (724)
Q Consensus 80 ~~-l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~~~--~ 154 (724)
+. ++..+ ..++++ |.+++.||+++++++++|+|.++++.||+++++++++|+.+++++++ . ...+++. .
T Consensus 110 ~~~~g~~~----~~al~l--g~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~ 183 (397)
T COG0475 110 LGILGLSL----IAALFL--GAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVG 183 (397)
T ss_pred HHHhccCh----HHHHHH--HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHh
Confidence 43 44433 567888 99999999999999999999999999999999999999999999999 6 5443332 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh
Q 047435 155 HKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPL 234 (724)
Q Consensus 155 ~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~ 234 (724)
.++.......+|.++..+..|++.+|+.|+..+. +.+|..+..++++++++++++|.+|+|+++|||++|+++++....
T Consensus 184 ~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~ 262 (397)
T COG0475 184 FILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYR 262 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccc
Confidence 2455566666676666666677777777776432 356888999999999999999999999999999999999998444
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhh
Q 047435 235 GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNV 314 (724)
Q Consensus 235 ~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~ 314 (724)
.++++++++++.+++|+|+||+.+|+.+|+..+... +..+..++.+..++|.+++++.++..|.+.+++...|..+.+
T Consensus 263 ~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~--~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 263 KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN--LLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQ 340 (397)
T ss_pred hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhh
Confidence 489999999998889999999999999999998764 444778888899999999999999999999999999999999
Q ss_pred hhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 047435 315 KGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQT 364 (724)
Q Consensus 315 kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~ 364 (724)
+|+++++.++.+.. +.++++.++..+.+++++|.+.+.+.+.+++...
T Consensus 341 ~ge~~~v~~~~~~~--~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~~ 388 (397)
T COG0475 341 GGEFAFVLAGIALG--SAISEALLTAVVILSMITTPILPLLTPILLKRLL 388 (397)
T ss_pred hhHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998754 4889999999999999999888888888776443
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=8.4e-34 Score=326.48 Aligned_cols=343 Identities=14% Similarity=0.076 Sum_probs=278.7
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLS- 79 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~- 79 (724)
+|+++||+++|.++. +..+..+.++++|++++||..|+|+|++.+|+++++++.++..++++|++++...+
T Consensus 39 ~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~ 110 (562)
T PRK05326 39 IGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAH 110 (562)
T ss_pred HHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999997541 24578899999999999999999999999999999999999999999998855444
Q ss_pred HHhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHH-H-Hh-ccCCc--
Q 047435 80 RILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKL-LTSELGQLAMSSSMLAELLGWIALMA-E-AV-FNKSL-- 153 (724)
Q Consensus 80 ~~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~l-l~s~~G~lals~a~i~D~~~~ill~i-~-~~-~~~~~-- 153 (724)
++++..+ ..++++ |++++.|+++++.++++|+|+ ++++.|+++.+.+.+||.++++++.+ . +. .+..+
T Consensus 111 ~l~g~~~----~~alll--gai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~ 184 (562)
T PRK05326 111 WLLGLDW----LEGLLL--GAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLS 184 (562)
T ss_pred HHhcCCH----HHHHHH--hhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcch
Confidence 4444332 567777 999999999999999999996 89999999999999999999988877 5 33 22211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC
Q 047435 154 GHKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPP 233 (724)
Q Consensus 154 ~~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p 233 (724)
+..+..++..+++.++..+++++++.|++++... ..++.+..+++.++++++++++.+|.|+++|+|++|+++++.++
T Consensus 185 ~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~ 262 (562)
T PRK05326 185 WGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPI 262 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcc
Confidence 2223344445555666777888889999988742 12456778888999999999999999999999999999998865
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhh
Q 047435 234 LGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILN 313 (724)
Q Consensus 234 ~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~ 313 (724)
..+...+++.+...+++.|+||+.+|+.+|++.+.+. .+..+++.+++.+++|++++++..+.++++++|+..+|+ .+
T Consensus 263 ~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g 340 (562)
T PRK05326 263 RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-ALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISW-VG 340 (562)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeee-ec
Confidence 5555555666656789999999999999999877642 233333345567889999999999999999999999999 48
Q ss_pred hhhhHHHHhhhhccccccCCC-hhhHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047435 314 VKGINEFMLLNRLRVNFKTID-EASYATMVLSHLAVNAIVTPIICIYHKP 362 (724)
Q Consensus 314 ~kG~~~l~~~~~~~~~~~~i~-~~~~~~lv~~~ll~t~i~~~l~~~l~~p 362 (724)
+||.++++++.+++. .|+.+ +..|+++.+++++|+.+.++.++.+.++
T Consensus 341 ~RG~v~i~lA~~~~~-~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 341 LRGAVPIVLATFPMM-AGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred chhHHHHHHHHHHHH-cCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHH
Confidence 999999999999999 99986 4677888888999988888888877653
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.3e-31 Score=281.64 Aligned_cols=244 Identities=20% Similarity=0.350 Sum_probs=208.1
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHH-HHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIP-YMIAMFLS 79 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip-~~~g~~~~ 79 (724)
+|+++||+++|.++ ..+.++.++++|+.+++|.+|+|+|++.+||++|++..+++.++++| ++++..++
T Consensus 25 ~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (273)
T TIGR00932 25 AGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLG 94 (273)
T ss_pred HHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999865 34689999999999999999999999999999999999999999999 77777677
Q ss_pred HHhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccCC-c-hh
Q 047435 80 RILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNKS-L-GH 155 (724)
Q Consensus 80 ~~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~~-~-~~ 155 (724)
++++..+ ..++.+ |++++.||++++.++++|+|+.+++.|+++++++++||+++|+++.+ . ..++.. + ..
T Consensus 95 ~~~~~~~----~~~~~l--g~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~~~~ 168 (273)
T TIGR00932 95 HLLGLAL----GAAVVI--GIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVA 168 (273)
T ss_pred HHHCCCH----HHHHHH--HHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 7766433 567777 99999999999999999999999999999999999999999999888 5 433222 1 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChh
Q 047435 156 KAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLG 235 (724)
Q Consensus 156 ~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~ 235 (724)
..+.+...+++.++.+.+.++..+|+.|+.++.++ .|.+...++.+++.+++++|.+|.|+++|||++|+++++. +.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aGl~~~~~-~~~ 246 (273)
T TIGR00932 169 LALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSES-EYR 246 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcCC-chH
Confidence 33444444555556667888889999988766433 5778888899999999999999999999999999999997 557
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHhccccc
Q 047435 236 SALVEKCDFVISNILLPFFYLRIGLLTN 263 (724)
Q Consensus 236 ~~l~ekl~~~~~~~flPlFF~~~G~~~d 263 (724)
+++.++++++. ++|+|+||+++|+++|
T Consensus 247 ~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 247 HKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 88999999998 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.2e-35 Score=327.47 Aligned_cols=341 Identities=22% Similarity=0.323 Sum_probs=83.7
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHH-HHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMI-AMFLS 79 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~-g~~~~ 79 (724)
+|+++||.+++..+. ....++.++++|+.++||.+|+|+|.+.+||++++++.+++.++++|+++ ++.+.
T Consensus 29 ~Gi~lg~~~~~~~~~---------~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (380)
T PF00999_consen 29 VGIVLGPSGLGLLEP---------DNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFLLS 99 (380)
T ss_dssp ----------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------------------
T ss_pred heeehhhhhhhhccc---------hhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHHHH
Confidence 599999999986441 14778899999999999999999999999999999999999999999988 66666
Q ss_pred HH---hhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccCCc-
Q 047435 80 RI---LSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNKSL- 153 (724)
Q Consensus 80 ~~---l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~~~- 153 (724)
++ .+..+ ..++++ |.+++.||++++.++++|.+..+++.++++++.+++||+++++++.+ . ..+.+..
T Consensus 100 ~~~~~~~~~~----~~al~l--~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~ 173 (380)
T PF00999_consen 100 FFLFILGLSW----AEALLL--GAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQASGQS 173 (380)
T ss_dssp ------------------TT--HHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-------------
T ss_pred Hhhccchhhh----HHHhhh--HHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhhcccccc
Confidence 43 22221 556666 99999999999999999999999999999999999999999998888 5 4311111
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC
Q 047435 154 --GHKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAG 231 (724)
Q Consensus 154 --~~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~ 231 (724)
......++..++..++..++.+++..|+.|+. ++.++.+..+++++++.+++++|.+|.++++|+|++|+++++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~ 250 (380)
T PF00999_consen 174 SLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSNS 250 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccccccceeeeeehccccc
Confidence 11112222233233333444444444444442 2346778889999999999999999999999999999999955
Q ss_pred CChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Q 047435 232 PPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIK-NFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSF 310 (724)
Q Consensus 232 ~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~ 310 (724)
+.++++.|+++++.+++|.|+||+++|+++|++.+. +...+.....+.+..+++|++++++.+++.|++++|+..+|+
T Consensus 251 -~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 329 (380)
T PF00999_consen 251 -PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIGL 329 (380)
T ss_dssp -------------------------------------------------------------------------HHHHTTT
T ss_pred -cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHHH
Confidence 677789999999988999999999999999998874 222455666677777799999999999999999999999999
Q ss_pred HhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 047435 311 ILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHK 361 (724)
Q Consensus 311 ~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~ 361 (724)
.+++||+++++++..+.+ .|.++++.+++++.++++|+++.|+.++.+.+
T Consensus 330 ~~~~~g~~~l~la~~~~~-~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 330 GMLPRGEVSLALALIALN-LGIISEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp TSS--HHHHHHHHHHHHH---------------------------------
T ss_pred hhcCccHHHHHHHHHHHh-cCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 999999999999999999 99999999999999999999999988887654
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.3e-28 Score=239.02 Aligned_cols=338 Identities=17% Similarity=0.241 Sum_probs=272.4
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
||++.||.--|... .+..-..++++|.+++||-+|++..++.+...+..++--++.++.+-...|++.++
T Consensus 39 AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~ 108 (408)
T COG4651 39 AGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSS 108 (408)
T ss_pred HHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHH
Confidence 58889997666543 24445589999999999999999999999888777776677777777778888888
Q ss_pred HhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hh----ccCCc-
Q 047435 81 ILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AV----FNKSL- 153 (724)
Q Consensus 81 ~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~----~~~~~- 153 (724)
.+++++ ...+.. |.++|..|+-+..|.|+|.++.+++.||++++--++.|+..++.+.. - .+ +.+..
T Consensus 109 ~lgws~----~~glvf--GlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~ 182 (408)
T COG4651 109 LLGWSF----GTGIVF--GLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGF 182 (408)
T ss_pred HcCCCc----ccceee--eehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhccccccc
Confidence 887765 233444 99999999999999999999999999999999999999998887766 3 22 22111
Q ss_pred h---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHhhc
Q 047435 154 G---H-KAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGAL-TDMLGVSFALGALIVGLIV 228 (724)
Q Consensus 154 ~---~-~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~-~~~~G~~~~lGaFlaGl~~ 228 (724)
. . ..+...+.+.|+.++.++.|++..|+..+.... ..+|.+.+.+++.+++.++- ++.+|+++.+|||++|+++
T Consensus 183 ~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL 261 (408)
T COG4651 183 ATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVL 261 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHh
Confidence 1 1 124566788999999999999999999886432 35788888999999877665 5889999999999999999
Q ss_pred CCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Q 047435 229 PAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILF 308 (724)
Q Consensus 229 ~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l 308 (724)
.+. ..+++..|..-++ .+.|.-+||+++||.+|+..+.+. .+ .+...+.+...+|-+.++...+.+|.|.+.++.+
T Consensus 262 ~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~-pl-~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLti 337 (408)
T COG4651 262 AES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PL-AVLATLLIILFGKSVAAFFIVRAFGHPVRTALTI 337 (408)
T ss_pred cch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcc-hH-HHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHH
Confidence 988 6777777776665 789999999999999999877543 23 3445566667899999999999999999999999
Q ss_pred HHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 047435 309 SFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHK 361 (724)
Q Consensus 309 g~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~ 361 (724)
+..+.+.|+++++++..+.+ .+++++.--..++...++ +++..|+.....+
T Consensus 338 s~SLaqigEFsfIlaGLgi~-l~llp~~gr~Lvlagail-sIl~nPllf~~~d 388 (408)
T COG4651 338 SASLAQIGEFSFILAGLGIK-LNLLPEAGRDLVLAGAIL-SILLNPLLFALLD 388 (408)
T ss_pred HHHHHhhhhHHHHHHHHhhh-hccCcHHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 99999999999999999999 999996665555555555 6667777655544
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.90 E-value=2.5e-21 Score=221.18 Aligned_cols=318 Identities=13% Similarity=0.123 Sum_probs=229.9
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
+|+++||+++|+++... + .......++ ++++++.+.+|.+|+++|.+.+++.++..+.+.+.++.++++++.++++
T Consensus 47 ~GiilGP~~l~~idP~~-~--g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~ 122 (810)
T TIGR00844 47 FGLIVGPHCLNWFNPLS-W--GNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVW 122 (810)
T ss_pred HHHHhhhhhhccCChhh-c--ccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999754210 0 001233444 9999999999999999999999999999999999999999998888887
Q ss_pred HhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHH---hccccCChhHHHHHHHHHHHHHHHHHHHHH-H--HhccC-C-
Q 047435 81 ILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVS---ELKLLTSELGQLAMSSSMLAELLGWIALMA-E--AVFNK-S- 152 (724)
Q Consensus 81 ~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~---el~ll~s~~G~lals~a~i~D~~~~ill~i-~--~~~~~-~- 152 (724)
++...+ + +..++++ |++++.|.+.....+++ ..+ +..++..++-+.+.+||.++++++.+ + +..+. .
T Consensus 123 ~Li~GL-~-~~~ALLL--GAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~ 197 (810)
T TIGR00844 123 ILVPGL-N-FPASLLM--GACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGG 197 (810)
T ss_pred HHHcCC-C-HHHHHHH--HhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccc
Confidence 663212 1 1566677 99999999776666665 223 56778888889999999999987765 4 22111 1
Q ss_pred c--h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 047435 153 L--G-----HKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVG 225 (724)
Q Consensus 153 ~--~-----~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaG 225 (724)
. . ..+|.++..+++.+++.++.++++.|+-++... ..+.++.+.++++++++.+++.+|.+.++++|++|
T Consensus 198 ~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i---~~esfla~~LaLAli~~gla~lLggSGfLAVFVAG 274 (810)
T TIGR00844 198 EIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNII---DRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAG 274 (810)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 1 1 122344444445555556666666665544322 23456667777888889999999999999999999
Q ss_pred hhcCCCCChhhH-HHHHHhhhhhhhhhHHHHHHhccccccccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 047435 226 LIVPAGPPLGSA-LVEKCDFVISNILLPFFYLRIGLLTNVHSIKN----FKSFAALETILVGAYVGKLVGSLCTVLFF-- 298 (724)
Q Consensus 226 l~~~~~~p~~~~-l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~----~~~~~~~~~ii~~~~~~K~~~~~l~~~~~-- 298 (724)
+++.+.....+. -...+......++..++|+.+|+.+....+.. ...|..+++.+++.++.|+.++++...+.
T Consensus 275 l~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~ 354 (810)
T TIGR00844 275 TAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPD 354 (810)
T ss_pred HHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999986443322 12335556677889999999999998876643 12455566667777788888888765544
Q ss_pred CCChhHHHHHHHHhhhhhhHHHHhhhhccccccC
Q 047435 299 GTSLRFGILFSFILNVKGINEFMLLNRLRVNFKT 332 (724)
Q Consensus 299 ~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~ 332 (724)
..+++|++++|+ ..+||+.++.++.++++ .+.
T Consensus 355 ~~s~rErlFigW-FGpRGIGSIyyl~~A~~-~~~ 386 (810)
T TIGR00844 355 IKSWREAMFIGH-FGPIGVGAVFAAILSKS-QLE 386 (810)
T ss_pred CCCHHHHHHhee-eccccHHHHHHHHHHHH-hhh
Confidence 368999999998 99999999999999988 543
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.87 E-value=6.2e-20 Score=208.94 Aligned_cols=338 Identities=13% Similarity=0.033 Sum_probs=220.0
Q ss_pred CeEEEcccccCC-cccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSR-NKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLS 79 (724)
Q Consensus 1 aGiiLGPs~Lg~-~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~ 79 (724)
+|+++||..++. .+ -++ +.+..+++..++|..|+++|++.+|++++....+++.++++|++++..+.
T Consensus 31 ~Gi~lg~~~~~~~~~----------~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~ 98 (525)
T TIGR00831 31 AGLLLGLAGLLPEVP----------LDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSL 98 (525)
T ss_pred HHHHHHhccccCCCC----------CCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889765432 11 111 23445899999999999999999999999999999999999998877666
Q ss_pred HHhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hhcc-C-Cc-h
Q 047435 80 RILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFN-K-SL-G 154 (724)
Q Consensus 80 ~~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~-~-~~-~ 154 (724)
+++... + ...++++ |+++|.|+++++..++++.+ ++++..+++.+.+++||..+++++.+ . +..+ + .+ .
T Consensus 99 ~~~~~l--~-~~~alll--Gails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~~~~~~~~~~~~~~~ 172 (525)
T TIGR00831 99 NWILGI--P-LALALIL--GAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAIAVAVALGKGVFDPL 172 (525)
T ss_pred HHHhcc--c-HHHHHHH--HHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCCCCcHH
Confidence 654321 1 1556666 99999999999999999988 47889999999999999999999888 5 4332 2 12 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh
Q 047435 155 HKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPL 234 (724)
Q Consensus 155 ~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~ 234 (724)
.....++..++..+++++++..+..|+.++..++ +.....+++++.+++++++|.+|.|+++++|++|+++++..+.
T Consensus 173 ~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~ 249 (525)
T TIGR00831 173 NAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRD 249 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcccccc
Confidence 2222222222223333344444555566543332 3345777888889999999999999999999999999975432
Q ss_pred ------hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccch----hH-----HH---HHHHHHHHHHHHHHHHHHH--
Q 047435 235 ------GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFK----SF-----AA---LETILVGAYVGKLVGSLCT-- 294 (724)
Q Consensus 235 ------~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~----~~-----~~---~~~ii~~~~~~K~~~~~l~-- 294 (724)
.+.-.+.+......++.+++|+.+|+++......... .+ .. .+++.......+++..+..
T Consensus 250 ~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~ 329 (525)
T TIGR00831 250 FSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFS 329 (525)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334545567889999999999998742111000 01 00 1111222333455433322
Q ss_pred HHH-----hCCChhHHHHHHHHhhhhhhHHHHhhhhcc-c-ccc--CCCh-----hhHHHHHHHHHHHHHHHHHHHHHhc
Q 047435 295 VLF-----FGTSLRFGILFSFILNVKGINEFMLLNRLR-V-NFK--TIDE-----ASYATMVLSHLAVNAIVTPIICIYH 360 (724)
Q Consensus 295 ~~~-----~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~-~-~~~--~i~~-----~~~~~lv~~~ll~t~i~~~l~~~l~ 360 (724)
.++ .++++|+.+.+++ .+.||.++++++..-- . +.| .-.. -++.+++++.++.....||+++++-
T Consensus 330 ~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 330 NRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 111 2478999999988 8899999999775321 1 011 1112 2333444555555555567777654
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.79 E-value=8.1e-17 Score=178.55 Aligned_cols=342 Identities=15% Similarity=0.142 Sum_probs=248.4
Q ss_pred eEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 2 GIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRI 81 (724)
Q Consensus 2 GiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~ 81 (724)
|++.||.+++..+. +....-+.+-.+.+..++|..|+|+|.+.++|+++.....++.+.+++.+......++
T Consensus 40 g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~ 111 (429)
T COG0025 40 GLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHW 111 (429)
T ss_pred HHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888877441 1112223333999999999999999999999999999999999999998877777776
Q ss_pred hhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hhc-cCCc--hh-
Q 047435 82 LSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVF-NKSL--GH- 155 (724)
Q Consensus 82 l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~-~~~~--~~- 155 (724)
+.... +...++.+ |+++|.|++.++..+.++.+ ...++.++..+.+++||..+++++.+ . +.. ++.. ..
T Consensus 112 l~~~i--~~~~a~l~--gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~ 186 (429)
T COG0025 112 LLPGI--PLAAAFLL--GAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWA 186 (429)
T ss_pred HhCCh--hHHHHHHH--hHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHH
Confidence 63322 11456666 99999999999999999877 68899999999999999999999988 5 322 2221 11
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcC---
Q 047435 156 ---KAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVP--- 229 (724)
Q Consensus 156 ---~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~--- 229 (724)
.++..+..+++.++..++.+++++|+-++... + ......+.+...+....++|.+|.+++++.+++|+...
T Consensus 187 ~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~--~-~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~ 263 (429)
T COG0025 187 LLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWT--S-PLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAV 263 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--c-hHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhh
Confidence 22344444455566667777777776665321 1 34567888999999999999999999999999998774
Q ss_pred C--CCChh-hHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC------C
Q 047435 230 A--GPPLG-SALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFG------T 300 (724)
Q Consensus 230 ~--~~p~~-~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~------~ 300 (724)
. ..+.. +...+.+.....-++.-+.|+..|++++...+... .++.+++.++..+++|++++++..+..+ .
T Consensus 264 ~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~ 342 (429)
T COG0025 264 RINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPL 342 (429)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Confidence 1 11222 33344466666778889999999999998877653 3556777888889999999999988743 7
Q ss_pred ChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChh-----hHHHHHHHHHHHHHHHHHHHHHhcC
Q 047435 301 SLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEA-----SYATMVLSHLAVNAIVTPIICIYHK 361 (724)
Q Consensus 301 ~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~-----~~~~lv~~~ll~t~i~~~l~~~l~~ 361 (724)
++++++.+++ -++||.++++++.....+..-...+ .+..++.++++.+...+|+.+++..
T Consensus 343 ~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 343 PWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred CHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 9999999987 8999999999888765411111122 3344444455545555666666654
No 14
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.76 E-value=1.3e-15 Score=164.76 Aligned_cols=303 Identities=12% Similarity=0.148 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhc
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLS 103 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s 103 (724)
..+-+.=+.+|.|++|+|+.-+.+. ++.||+ ..-++.|+++|.++-. .+.... +...--+ |+- +
T Consensus 64 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~----~~n~~~---~~~~~GW--~Ip-~ 133 (423)
T PRK14853 64 TWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYV----AVNLAG---GGALRGW--AIP-T 133 (423)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHH----HHhCCc---hhhhhhh--hhh-h
Confidence 3344444458999999999655432 222222 4567788888885322 233211 1122333 333 3
Q ss_pred cccHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 104 MTYFSTVADAVSELKLL-TSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAVLLV 181 (724)
Q Consensus 104 ~Ts~~vv~~iL~el~ll-~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~~~~ 181 (724)
.|+.+....+|..+|-. .+.++...++.|++||+.+++++++ + .++ ....+.......++ ++ |+
T Consensus 134 ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY--t~~--i~~~~L~~a~~~~~--~l--------~~ 199 (423)
T PRK14853 134 ATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY--TSE--LNLEALLLALVPLA--LF--------WL 199 (423)
T ss_pred hhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc--CCC--CCHHHHHHHHHHHH--HH--------HH
Confidence 47888889999998854 8889999999999999999999988 4 111 12223222222111 11 22
Q ss_pred HHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-----------ChhhHHHHHHhhhhhhhh
Q 047435 182 VNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGP-----------PLGSALVEKCDFVISNIL 250 (724)
Q Consensus 182 ~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~-----------p~~~~l~ekl~~~~~~~f 250 (724)
.++. ++++.+.++++. +.+.+..+..|+|+.+|+|++|+++|..+ +..+++++++++++..++
T Consensus 200 l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~I 273 (423)
T PRK14853 200 LVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVA 273 (423)
T ss_pred HHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 2332 244555555553 46677899999999999999999999521 346789999999999999
Q ss_pred hHHH-HHHhcccccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhH
Q 047435 251 LPFF-YLRIGLLTNV-HSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGIN 318 (724)
Q Consensus 251 lPlF-F~~~G~~~d~-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~ 318 (724)
+|+| |+..|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|++-..+|++-.-.=++
T Consensus 274 LPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTm 353 (423)
T PRK14853 274 VPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTV 353 (423)
T ss_pred HHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999 9999999986 4342110111456778888999999988777653 57889999988877777788
Q ss_pred HHHhhhhccc-cccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 047435 319 EFMLLNRLRV-NFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQ 363 (724)
Q Consensus 319 ~l~~~~~~~~-~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~ 363 (724)
++.+.+.+++ +...+++.-. .+.+.++++.++.-.+++...++.
T Consensus 354 SlFI~~LAf~~~~~~~~~aKi-gil~~S~~s~~~G~~~l~~~~~~~ 398 (423)
T PRK14853 354 SLLIGELAFGGGSARDDAVKV-GVLTGSLIAALLASVLLRLRNRKY 398 (423)
T ss_pred HHHHHHhhcCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999984 1112222222 233444555555555555544433
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.74 E-value=1.8e-15 Score=172.56 Aligned_cols=320 Identities=9% Similarity=0.037 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc--C--CCc-chhHHHHHhhhhhcc
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDY--T--PGV-ERGLFRLYFTSLLSM 104 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~--~--~~~-~~~~l~l~~~~~~s~ 104 (724)
+.+-.+.+-.++|..|+++|.+.++++.+.....++.|.+++.++.....+++... . .+. ...++.+ |+++|.
T Consensus 66 ~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allf--GAiiSa 143 (559)
T TIGR00840 66 SYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLF--GSLISA 143 (559)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHH--hHHhcC
Confidence 44555677899999999999999999999999999999999887665555543211 0 011 1456666 999999
Q ss_pred ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hhc-c-CC-chh----HHHH-HHHHHHHHHHHHHHH
Q 047435 105 TYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVF-N-KS-LGH----KAES-SLCLIGLLFFSFLVV 174 (724)
Q Consensus 105 Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~-~-~~-~~~----~l~~-~~~~~~f~~~~~~v~ 174 (724)
|++..+..++++.+ .+.++-.++.+.+++||..+++++.+ . +.. + +. ... .+.. +...+ ..+++++++
T Consensus 144 TDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~-GGiliG~v~ 221 (559)
T TIGR00840 144 VDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTC-GGLLVGVVF 221 (559)
T ss_pred CchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999 58889999999999999999999877 5 432 1 11 111 1111 11111 133344444
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-----CChhhHHHHHHhhhhhhh
Q 047435 175 RPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAG-----PPLGSALVEKCDFVISNI 249 (724)
Q Consensus 175 r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~-----~p~~~~l~ekl~~~~~~~ 249 (724)
..+..++.|+.... +.....+++++.+++++++|.+|.+++++.+++|+++.+. .+..+.-.+.+......+
T Consensus 222 G~l~~~l~r~~~~~---~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l 298 (559)
T TIGR00840 222 GFLVAFITRFTHHI---RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSL 298 (559)
T ss_pred HHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHH
Confidence 55566666665332 2345667788888999999999999999999999998642 222222233444455678
Q ss_pred hhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHhhhhhhHHHHhh
Q 047435 250 LLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLF------FGTSLRFGILFSFILNVKGINEFMLL 323 (724)
Q Consensus 250 flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~kG~~~l~~~ 323 (724)
...+.|+..|+.+-... ..+ .|..+++.+++.+++|+++.+..+.. .+.+++|.+.+++ .+.||.++++++
T Consensus 299 ~e~~IFvlLGl~l~~~~-~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLA 375 (559)
T TIGR00840 299 SETLIFIFLGVSLVTEN-HEW-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALA 375 (559)
T ss_pred HHHHHHHHHHHHHhcch-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHH
Confidence 88999999999763221 112 34444445566677888887766543 3579999999887 788999999987
Q ss_pred hhccccccCCChhhHHH-----HHHHHHHHHHHHHHHHHHhc
Q 047435 324 NRLRVNFKTIDEASYAT-----MVLSHLAVNAIVTPIICIYH 360 (724)
Q Consensus 324 ~~~~~~~~~i~~~~~~~-----lv~~~ll~t~i~~~l~~~l~ 360 (724)
...-+ .+.-..+.+.. +++++++.....+|+++++.
T Consensus 376 l~l~~-~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 376 LLLDE-KIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred HhCCC-CCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhC
Confidence 65433 33333333332 23334444444578888775
No 16
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.8e-16 Score=166.15 Aligned_cols=328 Identities=14% Similarity=0.074 Sum_probs=260.7
Q ss_pred eEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-H
Q 047435 2 GIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLS-R 80 (724)
Q Consensus 2 GiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~-~ 80 (724)
|++.|-.++|.++. +..+.-..++++++++++|..|+..+++.+|...++++.++.+|++++-.+...++ |
T Consensus 41 Gm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ 112 (574)
T COG3263 41 GMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAY 112 (574)
T ss_pred HHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888887652 34677788999999999999999999999999999999999999999876655554 4
Q ss_pred HhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H--HhccCCc--hh
Q 047435 81 ILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E--AVFNKSL--GH 155 (724)
Q Consensus 81 ~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~--~~~~~~~--~~ 155 (724)
.+...| .+.+++ |.+...|.-+.|..+|.+.+ +|.+.+.+.--.+--||-.++++... + ...++++ +.
T Consensus 113 ll~l~w----le~~Li--GAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~ 185 (574)
T COG3263 113 LLNLDW----LEGLLI--GAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWG 185 (574)
T ss_pred HhccHH----HHHHHH--HHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHH
Confidence 455444 788888 99999999999999998888 57888887777788999999887665 4 3333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC-h
Q 047435 156 KAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPP-L 234 (724)
Q Consensus 156 ~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p-~ 234 (724)
.+..++.-.++.++..+....+..|+++|+.- .+..|..+++...+....+++.+|-+.++.-+++|+.+.+.+- .
T Consensus 186 ~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~ 262 (574)
T COG3263 186 FLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRA 262 (574)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchh
Confidence 23335566667777888888889999999743 2567888999999999999999999999999999999998843 3
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhh
Q 047435 235 GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNV 314 (724)
Q Consensus 235 ~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~ 314 (724)
.+.+.+..|.+ .++..-+.|...|+.++++++... ....+.+.+...+++|.+++|+...-++.+++|..+++| -.-
T Consensus 263 r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~i-avPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGL 339 (574)
T COG3263 263 RHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPI-AIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGL 339 (574)
T ss_pred HHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHh-hHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhc
Confidence 45666667776 688888889999999999987653 344566677888899999999999989999999999998 899
Q ss_pred hhhHHHHhhhhccccccCCChhh-HHHHHHHHHHHHHH
Q 047435 315 KGINEFMLLNRLRVNFKTIDEAS-YATMVLSHLAVNAI 351 (724)
Q Consensus 315 kG~~~l~~~~~~~~~~~~i~~~~-~~~lv~~~ll~t~i 351 (724)
||.++++++.+..- .|.-+.+. |++.-+.++++-.+
T Consensus 340 RGAv~IilAifpm~-aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 340 RGAVPIILAIFPMM-AGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred ccchhhhHhhhHHh-cCCccceEEeehhHHHHHHHHHH
Confidence 99999999999888 78776654 44443434443333
No 17
>PRK11175 universal stress protein UspE; Provisional
Probab=99.64 E-value=1.3e-14 Score=155.19 Aligned_cols=272 Identities=11% Similarity=0.027 Sum_probs=166.6
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhh-hhcccccchHHHHH-HHHHhhhcC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQK-LRLIREDSTYRIMH-AAEKQFRSS 464 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~-~~~~~~~~~~~i~~-af~~~~~~~ 464 (724)
|||+|++.+++....++.+..++... ..+++++|+++......+........+ ..+...++.++.++ ..+.+.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 79 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYL--- 79 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 69999999999999999988887653 357899998764322111111100000 00000011222233 222222
Q ss_pred CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEEecCCCCCCCccc
Q 047435 465 DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLLVDKSSTTGHFYS 543 (724)
Q Consensus 465 ~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~~ 543 (724)
..+++++..... .++.+++|++.|+++++||||+|+|++.. +.. .+|++.+++++++||+|.++-+.. .
T Consensus 80 ~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~-~~gs~~~~l~~~~~~pvlvv~~~~-~------ 149 (305)
T PRK11175 80 DAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV-IFTPTDWHLLRKCPCPVLMVKDQD-W------ 149 (305)
T ss_pred hcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh-ccChhHHHHHhcCCCCEEEecccc-c------
Confidence 124555554332 37889999999999999999999998754 221 689999999999999987663321 1
Q ss_pred cCCcceEEEEeecCCcch-------HHHHHHHHHHhcCC-CeEEEEEEEeeccccc--------cchhhhhhh---HHHH
Q 047435 544 IGHFTYSLVVLFLGGADD-------REALALVSRMSGHP-GLSITVFRITVIEDEQ--------SEYDCERHL---DEIA 604 (724)
Q Consensus 544 ~~~~~~~I~v~f~GG~dd-------reAL~~a~rma~~~-~~~ltv~r~~~~~~~~--------~~~~~~~~~---d~~~ 604 (724)
....+|+++.-++++. ..|+++|.++|+.. ++.++++|+.+..... ..++.++.. -++.
T Consensus 150 --~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (305)
T PRK11175 150 --PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLA 227 (305)
T ss_pred --CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHH
Confidence 1135899999987642 67999999999887 9999999987421100 000111111 1234
Q ss_pred HHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCC
Q 047435 605 INEFITNNISNACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDF 682 (724)
Q Consensus 605 i~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~ 682 (724)
++++...... + ..+..+..|. ..+.|.+.+ .+.||+|+|.++.. |+.+ --+|...+-++.
T Consensus 228 l~~~~~~~~~--~--~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~------~~~~----~llGS~a~~v~~--- 289 (305)
T PRK11175 228 MKALRQKFGI--D--EEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRT------GLSA----AFLGNTAEHVID--- 289 (305)
T ss_pred HHHHHHHhCC--C--hhheeeccCC-HHHHHHHHHHHhCCCEEEECCCccC------CCcc----eeecchHHHHHh---
Confidence 4555443321 1 1112233332 223333332 47999999998542 3333 258999999996
Q ss_pred CCCcccEEEEEe
Q 047435 683 CKGMTSVLVIQC 694 (724)
Q Consensus 683 ~~~~~svLvvqq 694 (724)
.++++||||..
T Consensus 290 -~~~~pVLvv~~ 300 (305)
T PRK11175 290 -HLNCDLLAIKP 300 (305)
T ss_pred -cCCCCEEEEcC
Confidence 57789999963
No 18
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.56 E-value=1.2e-12 Score=139.22 Aligned_cols=270 Identities=14% Similarity=0.133 Sum_probs=170.4
Q ss_pred HHHHHHHHHH-HHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 28 VINTLSTLSG-VYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 28 ~l~~l~~iGl-~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
.+...-+=|+ .+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ ...+....+ ...--+ |+
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~i----y~~~n~~~~---~~~~GW--~I 121 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALI----YLAFNANDP---ITREGW--AI 121 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCC---cccCcc--cc
Confidence 3444444444 58899999999877754 333444 45567778888753 222322110 111122 33
Q ss_pred hhc-cccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 101 LLS-MTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAV 178 (724)
Q Consensus 101 ~~s-~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~ 178 (724)
-++ -++|++-...+-..+ ....+-...++-|++||+.+++++++ +. ++ ....+.....+++.+
T Consensus 122 P~ATDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt--~~--i~~~~L~~a~~~~~~---------- 186 (373)
T TIGR00773 122 PAATDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT--ND--LSMAALLVAAVAIAV---------- 186 (373)
T ss_pred ccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC--CC--CCHHHHHHHHHHHHH----------
Confidence 322 134444443333333 44556778899999999999988887 41 11 123333333332221
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh----hhHHHHHHhhhhhhhhhHHH
Q 047435 179 LLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPL----GSALVEKCDFVISNILLPFF 254 (724)
Q Consensus 179 ~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~----~~~l~ekl~~~~~~~flPlF 254 (724)
.++.+|. .+++...+.++..++ .+++ ...|+|+.+|+|++|+++|..++. .+++++.+++.+..+++|+|
T Consensus 187 l~~~~~~----~v~~~~~y~~lgvll-W~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlF 260 (373)
T TIGR00773 187 LAVLNRC----GVRRLGPYMLVGVIL-WFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLF 260 (373)
T ss_pred HHHHHHc----CCchhhHHHHHHHHH-HHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1223332 133444444433333 2233 799999999999999999986443 34566666677989999999
Q ss_pred -HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhHHHHhh
Q 047435 255 -YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGINEFMLL 323 (724)
Q Consensus 255 -F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~ 323 (724)
|+..|.++|...+... .......+++..+++|.+|++..++.. +++|++-..+|++-...=++++-+.
T Consensus 261 AFanAGv~l~~~~~~~~-~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~ 339 (373)
T TIGR00773 261 AFANAGVSLQGVSLNGL-TSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIA 339 (373)
T ss_pred HHHhcCeeeecCcchhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987554332 122366788888999999999888763 5788999888887777778888899
Q ss_pred hhccc
Q 047435 324 NRLRV 328 (724)
Q Consensus 324 ~~~~~ 328 (724)
+.+++
T Consensus 340 ~LAf~ 344 (373)
T TIGR00773 340 SLAFG 344 (373)
T ss_pred HHhcC
Confidence 98885
No 19
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.3e-12 Score=132.89 Aligned_cols=316 Identities=11% Similarity=0.093 Sum_probs=218.2
Q ss_pred CeEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSR 80 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~ 80 (724)
.|+++||+++++.+... =.+.+.....++.+-+..=.|.+++|+.-..+.++++..+..-+--+..-+++.++..|
T Consensus 47 tGlI~Gphvlnlfdp~~----wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy 122 (467)
T KOG4505|consen 47 TGLIFGPHVLNLFDPNS----WGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVY 122 (467)
T ss_pred hheeechhhhhhcCCcc----ccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999854211 01235566778899999999999999999999999998776544433444444444455
Q ss_pred HhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHhccccC---ChhHHHHHHHHHHHHHHHHHHHHH-H--HhccCC--
Q 047435 81 ILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSELKLLT---SELGQLAMSSSMLAELLGWIALMA-E--AVFNKS-- 152 (724)
Q Consensus 81 ~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~---s~~G~lals~a~i~D~~~~ill~i-~--~~~~~~-- 152 (724)
.+.... + ...++.+ +..++.|.+-..+.++.+-+..+ .++..+..+.+-.||..+++++.+ + +.....
T Consensus 123 ~l~p~l-n-f~~Sl~i--aaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~ 198 (467)
T KOG4505|consen 123 ALIPNL-N-FLTSLLI--AACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRK 198 (467)
T ss_pred HHhccc-c-HHHHHHH--HHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhc
Confidence 443221 1 1556666 88888888655555665544433 345557888899999999998877 5 322211
Q ss_pred -c--h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHh
Q 047435 153 -L--G---HKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGL 226 (724)
Q Consensus 153 -~--~---~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl 226 (724)
. + ..++.....+++..++.++.|..++..-++.--+ .|+++.+-+++.+.|+.+.+.+|.+-.+-.|.||.
T Consensus 199 ~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi 275 (467)
T KOG4505|consen 199 AGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGI 275 (467)
T ss_pred cCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhh
Confidence 1 1 2233333444566677788887776666554332 57888888999999999999999999999999999
Q ss_pred hcCCCCChhhHH-HHHHhhhhhhhhhHHHHHHhcccccccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHh--C
Q 047435 227 IVPAGPPLGSAL-VEKCDFVISNILLPFFYLRIGLLTNVHSIKNF----KSFAALETILVGAYVGKLVGSLCTVLFF--G 299 (724)
Q Consensus 227 ~~~~~~p~~~~l-~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~----~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~ 299 (724)
+++...-+.++. ..++..+..-++--.||++.|..++++.++.. ..|..+++-+.+.+.-|+-++++.-... =
T Consensus 276 ~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdi 355 (467)
T KOG4505|consen 276 VFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDI 355 (467)
T ss_pred hcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcch
Confidence 999886565544 34567777777888999999999999888642 2454444434444444444444432221 1
Q ss_pred CChhHHHHHHHHhhhhhhHHHHhhhhccc
Q 047435 300 TSLRFGILFSFILNVKGINEFMLLNRLRV 328 (724)
Q Consensus 300 ~~~~~~~~lg~~m~~kG~~~l~~~~~~~~ 328 (724)
.+|||++++|. .+|.|.-++..+..+..
T Consensus 356 kswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 356 KSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred hhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 37999999998 89999988888887754
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.40 E-value=3.2e-12 Score=118.47 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=99.5
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCCC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSDV 466 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 466 (724)
|||+|++++++...+++.+..+++. .+..++++|+++.+....+ +... ...+..++.++.+.++....
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~-- 68 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQLE----VNVQRARKLLRQAERIAASL-- 68 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chhH----HHHHHHHHHHHHHHHHhhhc--
Confidence 6999999999999999999999976 4579999999997644322 1100 11223456666666655433
Q ss_pred CeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 467 PFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 467 ~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
++.+++....+ ++..++||+.|+|.++|+|++|+|+++. +.. .+|+++++|++++||+|+++
T Consensus 69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~-~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR-LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce-ecCchHHHHHhcCCCCEEEe
Confidence 55677776665 6899999999999999999999998875 221 79999999999999998765
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.19 E-value=6e-09 Score=112.85 Aligned_cols=295 Identities=14% Similarity=0.132 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhc
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLS 103 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s 103 (724)
..+.+.-+.+|.|++|+|+.-+.+. ++.||+ ..-++.|+++|.++ ...+.... ...--+ |+-++
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~~~----~~~~GW--gIPmA 139 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNADT----PSQHGF--GIPMA 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----HhheecCC----CccCcc--ccccH
Confidence 3344444558999999999877654 233443 45667778888753 22232211 112223 43333
Q ss_pred c-ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 104 M-TYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAVLLV 181 (724)
Q Consensus 104 ~-Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~~~~ 181 (724)
+ ++|++-.-.+-..+ ..+.+-...++-|++||+.+++++++ + + + +....+..++.+++.++ ++
T Consensus 140 TDIAFAlgvLallG~r-vP~~LrvFLlaLAIvDDlgAI~VIAlFY-t-~--~i~~~~L~~a~~~~~~l----------~~ 204 (438)
T PRK14856 140 TDIAFALGVIMLLGKR-VPTALKVFLITLAVADDLGAIVVIALFY-T-T--NLKFAWLLGALGVVLVL----------AV 204 (438)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhHhheeeec-C-C--CCcHHHHHHHHHHHHHH----------HH
Confidence 1 33333322222222 34566678899999999999988887 4 1 1 12334444443332221 22
Q ss_pred HHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh---------------------------
Q 047435 182 VNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPL--------------------------- 234 (724)
Q Consensus 182 ~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~--------------------------- 234 (724)
.+|.. ++....++++.+ ..-+.....|+|+.++..++|+++|..++.
T Consensus 205 ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (438)
T PRK14856 205 LNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQ 278 (438)
T ss_pred HHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccch
Confidence 23321 233344444433 334455789999999999999999964322
Q ss_pred -----------------hhHHHHHHhhhhhhhhhHHH-HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 235 -----------------GSALVEKCDFVISNILLPFF-YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVL 296 (724)
Q Consensus 235 -----------------~~~l~ekl~~~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 296 (724)
.+++++.+.+.+..+.+|+| |+..|..++....... -.....+++..++||.+|.+..++
T Consensus 279 ~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~--~pv~lGI~~GLvvGK~lGI~~~s~ 356 (438)
T PRK14856 279 QEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEV--DKVLLGVILGLCLGKPLGIFLITF 356 (438)
T ss_pred hhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhcc--CcHHHHHHHHHHhcchHHHHHHHH
Confidence 13566778888888999999 7899999985432211 123456677778889988888776
Q ss_pred Hh----------CCChhHHHHHHHHhhhhhhHHHHhhhhccccc--cCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 047435 297 FF----------GTSLRFGILFSFILNVKGINEFMLLNRLRVNF--KTIDEASYATMVLSHLAVNAIVTPIICI 358 (724)
Q Consensus 297 ~~----------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~--~~i~~~~~~~lv~~~ll~t~i~~~l~~~ 358 (724)
.. |++|++-..+|++-+..=++++.+.+.+++ . .-.-++.=-.+.+.++++.+++..++++
T Consensus 357 lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~-~~~~~~~~~aKigIL~gS~lsai~G~~~L~~ 429 (438)
T PRK14856 357 ISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT-SEHKDAMEVAKIAILLGSLISGIIGALYLFA 429 (438)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 578899888888777777888889999886 3 2122222222334444444444444443
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.12 E-value=2.2e-08 Score=106.99 Aligned_cols=270 Identities=12% Similarity=0.113 Sum_probs=165.2
Q ss_pred HHHHHHHHHH-HHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 28 VINTLSTLSG-VYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 28 ~l~~l~~iGl-~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
.+....+=|+ .+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ ...+....+ ...--+ |+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlI----y~~~n~g~~---~~~~GW--gI 128 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALI----YAAFNYNNP---ETLRGW--AI 128 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HheeecCCC---cccCcc--cc
Confidence 3444444454 58899999999877754 233443 45667778888753 222222110 111122 33
Q ss_pred hhcc-ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 101 LLSM-TYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAV 178 (724)
Q Consensus 101 ~~s~-Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~ 178 (724)
-+++ ++|++-.-.+-..+ ....+-...++-|++||+.+++++++ + + ++ ....+...+..++.++
T Consensus 129 PmATDIAFAlgvL~llG~r-vP~~Lr~FLlaLAIvDDlgAI~VIA~FY-t-~~--i~~~~L~~a~~~~~~l--------- 194 (389)
T PRK09560 129 PAATDIAFALGVLALLGKR-VPVSLKVFLLALAIIDDLGAIVIIALFY-T-SD--LSLPALALAAIAIAVL--------- 194 (389)
T ss_pred ccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeec-C-CC--CCHHHHHHHHHHHHHH---------
Confidence 3321 23333222222222 34556778889999999999988887 4 1 11 1233443333322211
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh------hhHHHHHHhhhhhhhhhH
Q 047435 179 LLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPL------GSALVEKCDFVISNILLP 252 (724)
Q Consensus 179 ~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~------~~~l~ekl~~~~~~~flP 252 (724)
++.+|. .++....+.++.. ..-+.....|+|+.++..++|+++|..++. .+++++++++.++.+.+|
T Consensus 195 -~~ln~~----~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlP 267 (389)
T PRK09560 195 -FLLNRL----GVTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILP 267 (389)
T ss_pred -HHHHHc----CCccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHH
Confidence 222332 1333445555443 334445678999999999999999974322 357889999999888899
Q ss_pred HH-HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhHHHH
Q 047435 253 FF-YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGINEFM 321 (724)
Q Consensus 253 lF-F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~ 321 (724)
+| |+..|..++-..+... .-.....+++...+||.+|.+..++.. |++|++-..+|++-...=++++.
T Consensus 268 lFAlaNAGV~l~~~~~~~~-~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLF 346 (389)
T PRK09560 268 LFAFANAGVSLAGISLSSL-TSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLF 346 (389)
T ss_pred HHHhhcCCeeecCCcHHhc-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99 7889988843223221 112345667777888998888877653 57889988888877777788888
Q ss_pred hhhhccc
Q 047435 322 LLNRLRV 328 (724)
Q Consensus 322 ~~~~~~~ 328 (724)
+++.++.
T Consensus 347 Ia~LAF~ 353 (389)
T PRK09560 347 IGSLAFG 353 (389)
T ss_pred HHHhhcC
Confidence 9998884
No 23
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.08 E-value=3.9e-08 Score=106.15 Aligned_cols=264 Identities=10% Similarity=0.093 Sum_probs=164.4
Q ss_pred HHHHHHHHHH-HHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 28 VINTLSTLSG-VYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 28 ~l~~l~~iGl-~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
.+...-+=|+ .+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ ...+.... ...--+ |+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI----y~~~n~~~----~~~~GW--gI 131 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL----YTALNAGG----PGASGW--GV 131 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH----HheeecCC----CccCcc--cc
Confidence 4444444454 58899999999887763 333444 45567777888753 22232211 112223 43
Q ss_pred hhcc-ccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 101 LLSM-TYFSTVADAVSELKL-LTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPA 177 (724)
Q Consensus 101 ~~s~-Ts~~vv~~iL~el~l-l~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~ 177 (724)
-+++ ++|++- ++.=+|- ....+-...++-|++||+.+++++++ + + ++ ....+..++.+++.++
T Consensus 132 PmATDIAFAlg--vLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY-t-~~--i~~~~L~~a~~~~~~l-------- 197 (423)
T PRK14855 132 PMATDIAFALG--VLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY-T-SG--LNLLALLLAALTWALA-------- 197 (423)
T ss_pred ccHHHHHHHHH--HHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec-C-CC--CCHHHHHHHHHHHHHH--------
Confidence 3331 334333 3332332 33456678899999999999988887 4 1 11 1233443333322211
Q ss_pred HHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-Ch----------------------
Q 047435 178 VLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGP-PL---------------------- 234 (724)
Q Consensus 178 ~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~-p~---------------------- 234 (724)
++.+|. .++....++++.+ ..-+.....|+|+.++..++|+++|..+ +.
T Consensus 198 --~~ln~~----~v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (423)
T PRK14855 198 --LLAGRL----GVTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGAR 269 (423)
T ss_pred --HHHHHc----CCccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHH
Confidence 222332 1333444444443 3344556799999999999999999741 11
Q ss_pred --------------hhHHHHHHhhhhhhhhhHHH-HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 047435 235 --------------GSALVEKCDFVISNILLPFF-YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF- 298 (724)
Q Consensus 235 --------------~~~l~ekl~~~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~- 298 (724)
.+++++.+.+.+..+.+|+| |+..|..++-.. ..+ ....+++..++||.+|.+..++..
T Consensus 270 ~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p----v~lGI~~GLvvGK~lGI~~~s~lav 344 (423)
T PRK14855 270 LRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT----VSLGVFLGLLLGKPLGVVGGAWLAV 344 (423)
T ss_pred HHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc----HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 24677888899888899999 788999885333 222 345667777888988888877653
Q ss_pred ---------CCChhHHHHHHHHhhhhhhHHHHhhhhccc
Q 047435 299 ---------GTSLRFGILFSFILNVKGINEFMLLNRLRV 328 (724)
Q Consensus 299 ---------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~ 328 (724)
+++|++-..+|++-+..=++++.+++.+++
T Consensus 345 kl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 345 RLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 578999998888777777888989999986
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.07 E-value=3.9e-08 Score=104.85 Aligned_cols=269 Identities=13% Similarity=0.144 Sum_probs=164.4
Q ss_pred HHHHHHHHH-HHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhh
Q 047435 29 INTLSTLSG-VYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSL 101 (724)
Q Consensus 29 l~~l~~iGl-~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~ 101 (724)
+...-+=|+ .+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ ...+....+ ...--+ |+-
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAli----y~~~n~~~~---~~~~GW--aIP 129 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALI----YLLFNYADP---VTREGW--AIP 129 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCC---cccCcc--ccc
Confidence 444444455 58899999999887763 333443 45667778888753 222322110 111122 332
Q ss_pred hcc-ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 102 LSM-TYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAVL 179 (724)
Q Consensus 102 ~s~-Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~~ 179 (724)
+++ ++|++-.-.+-..+ ....+-...++-|++||+.+++++++ + + + +..+.+.....+++.+ +
T Consensus 130 ~ATDIAFalgvlallG~r-vP~~LrvFLlaLAIvDDlgAI~VIAlFY-t-~--~i~~~~L~~a~~~~~~--l-------- 194 (388)
T PRK09561 130 AATDIAFALGVLALLGSR-VPVALKIFLLALAIIDDLGAIVIIALFY-T-S--DLSMVSLGVAAVAIAV--L-------- 194 (388)
T ss_pred cHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhHhheeeec-C-C--CccHHHHHHHHHHHHH--H--------
Confidence 221 23333222222222 34556778889999999999988887 4 1 1 1123333333322221 1
Q ss_pred HHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC----hhhHHHHHHhhhhhhhhhHHH-
Q 047435 180 LVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPP----LGSALVEKCDFVISNILLPFF- 254 (724)
Q Consensus 180 ~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p----~~~~l~ekl~~~~~~~flPlF- 254 (724)
++.+|. .++....+.++.. ..-+.....|+|+.++..++|+++|...+ -.+++++++.+.++.+.+|+|
T Consensus 195 ~~ln~~----~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA 268 (388)
T PRK09561 195 AVLNLC----GVRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFA 268 (388)
T ss_pred HHHHHc----CCccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHH
Confidence 222332 1333444555443 33445567999999999999999997422 136788999999988899999
Q ss_pred HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhHHHHhhh
Q 047435 255 YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGINEFMLLN 324 (724)
Q Consensus 255 F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~~ 324 (724)
|+..|..++-..+... .-.....+++..++||.+|.+..++.. +++|++-..+|++-...=++++.+.+
T Consensus 269 faNAGV~l~~~~~~~~-~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~ 347 (388)
T PRK09561 269 FANAGVSLQGVTLDGL-TSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIAS 347 (388)
T ss_pred hhcCCeeeccCcHHhh-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888988832222211 112345667777888998888877653 57889988888877777778888899
Q ss_pred hccc
Q 047435 325 RLRV 328 (724)
Q Consensus 325 ~~~~ 328 (724)
.+++
T Consensus 348 LAF~ 351 (388)
T PRK09561 348 LAFG 351 (388)
T ss_pred HhcC
Confidence 8885
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.04 E-value=1e-07 Score=101.35 Aligned_cols=270 Identities=14% Similarity=0.105 Sum_probs=164.2
Q ss_pred HHHHHHHHHH-HHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 28 VINTLSTLSG-VYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 28 ~l~~l~~iGl-~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
.+....+=|+ .+|.|++|+|+.-+.+. ++.||+ ..-++.|+++|.++=. .+... + ...--+ |+
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~----~~n~~-~---~~~~GW--~I 124 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYL----SINHD-I---KVINGW--AI 124 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHH----hhccC-C---cccCcc--cc
Confidence 3444444455 48899999999877653 333444 4566778888875322 22221 1 111122 33
Q ss_pred hhc-cccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 101 LLS-MTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAV 178 (724)
Q Consensus 101 ~~s-~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~ 178 (724)
-++ -++|++-...+-..+ ....+--..++-|++||+.+++++++ + + ++ ..+.+.....+++. ++++
T Consensus 125 P~ATDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFY-t-~~--i~~~~L~~A~~~~~--~l~~----- 192 (383)
T PRK14854 125 PSATDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFY-T-KS--LSLLSLSLGTLFIL--AMII----- 192 (383)
T ss_pred ccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeec-C-CC--ccHHHHHHHHHHHH--HHHH-----
Confidence 332 134444443333323 44556667788899999999988887 4 1 11 12223322222111 1111
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC----hhhHHHHHHhhhhhhhhhHHH
Q 047435 179 LLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPP----LGSALVEKCDFVISNILLPFF 254 (724)
Q Consensus 179 ~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p----~~~~l~ekl~~~~~~~flPlF 254 (724)
.+|.. .++....+.++.. ..-+....-|+|+.++..+.|+++|...+ -.+++++++++.++.+.+|+|
T Consensus 193 ---~nr~~---~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlF 264 (383)
T PRK14854 193 ---CNRIF---KINRSSVYVVLGF--FAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVF 264 (383)
T ss_pred ---HHHhc---CCceehHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHH
Confidence 22210 1233344444333 33455578999999999999999997422 135788889999999999999
Q ss_pred -HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhHHHHhh
Q 047435 255 -YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGINEFMLL 323 (724)
Q Consensus 255 -F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~ 323 (724)
|+..|..++-..+... .-.....+++...+||.+|.+..++.. +++|++-..+|++-...=++++.++
T Consensus 265 A~aNAGV~l~~~~~~~~-~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa 343 (383)
T PRK14854 265 AFANAGISFSGISFSIL-FEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIG 343 (383)
T ss_pred HhhcCCeeeccCcHHhh-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889988842222211 112345667777888988888777653 5788999988887777778889999
Q ss_pred hhccc
Q 047435 324 NRLRV 328 (724)
Q Consensus 324 ~~~~~ 328 (724)
+.+++
T Consensus 344 ~LAF~ 348 (383)
T PRK14854 344 VLAFN 348 (383)
T ss_pred HhhCC
Confidence 99986
No 26
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.01 E-value=9e-09 Score=113.90 Aligned_cols=314 Identities=13% Similarity=0.123 Sum_probs=199.8
Q ss_pred HHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhcCC-Cc-chhHHHHHhhhhhccccHHHHHHHH
Q 047435 38 VYFIFIISVKMDTVKILRAAKHTWFITIACLVIPY-MIAMFLSRILSDYTP-GV-ERGLFRLYFTSLLSMTYFSTVADAV 114 (724)
Q Consensus 38 ~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~-~~g~~~~~~l~~~~~-~~-~~~~l~l~~~~~~s~Ts~~vv~~iL 114 (724)
=-+.|-.|.+++.+.++|+......+++.|..+.. ++|.++.++...... ++ ...++++ |.++|.|.+-.+..++
T Consensus 107 Ppiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~f--GaliSATDPVtvLaIf 184 (575)
T KOG1965|consen 107 PPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAF--GALISATDPVTVLAIF 184 (575)
T ss_pred chhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHH--hhHhcccCchHHHHHH
Confidence 34679999999999999999999999998877764 455555444222111 22 2677777 9999999999999999
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccCCc-h---hHH----HHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 047435 115 SELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNKSL-G---HKA----ESSLCLIGLLFFSFLVVRPAVLLV-VN 183 (724)
Q Consensus 115 ~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~~~-~---~~l----~~~~~~~~f~~~~~~v~r~~~~~~-~~ 183 (724)
.|++ ....+=.++-+.+++||..+++++.. . ....+.+ . ..+ ..+...++..+...++.-.+.... +|
T Consensus 185 nel~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~ 263 (575)
T KOG1965|consen 185 NELG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR 263 (575)
T ss_pred HHhC-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 56777789999999999999999887 4 3222111 1 122 222233323333333322222222 22
Q ss_pred hCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-----CChhhHHHHHHhhhhhhhhhHHHHHHh
Q 047435 184 RTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAG-----PPLGSALVEKCDFVISNILLPFFYLRI 258 (724)
Q Consensus 184 ~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~-----~p~~~~l~ekl~~~~~~~flPlFF~~~ 258 (724)
|+ ...+..+++++....++++|.+|+++++.-+..|+.+... .+..+.-.+.+-...+-+---+-|+++
T Consensus 264 ~~------~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~ 337 (575)
T KOG1965|consen 264 RT------PSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYL 337 (575)
T ss_pred CC------cHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2356788888899999999999999999999999998863 233333344444444555666779999
Q ss_pred cc-cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CChhHHHHHHHHhhhhhhHHHHhhhhcc
Q 047435 259 GL-LTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFG----------TSLRFGILFSFILNVKGINEFMLLNRLR 327 (724)
Q Consensus 259 G~-~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~~~~~~lg~~m~~kG~~~l~~~~~~~ 327 (724)
|+ -+|..... +....++....++.+++|..-.+-.+.+.+ .|.++-..+.+.-.-||.++++++.--.
T Consensus 338 Gl~~f~~~k~~-~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~ 416 (575)
T KOG1965|consen 338 GLSAFDFQKHV-YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDF 416 (575)
T ss_pred hHHHhccccee-eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhc
Confidence 96 33333322 111234556666777777766555555443 3333344554444479999988765432
Q ss_pred ccc-----cCCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 047435 328 VNF-----KTIDEASYATMVLSHLAVNAIVTPIICIYHK 361 (724)
Q Consensus 328 ~~~-----~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~ 361 (724)
.+. +.+-..+..++++.+++....+.|+++++..
T Consensus 417 ~~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 417 TDSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred cccccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 211 2232333444555555666678899999864
No 27
>PRK15456 universal stress protein UspG; Provisional
Probab=98.99 E-value=4.4e-09 Score=99.20 Aligned_cols=136 Identities=13% Similarity=0.017 Sum_probs=86.8
Q ss_pred eeEEEEeeccC--ChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhc
Q 047435 386 LRIFCGVHFEG--NIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRS 463 (724)
Q Consensus 386 lrILvcv~~~~--~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 463 (724)
-|||+|++.++ +...+++.+..++.. . ..++++|+++..... ......... +.......+...+.++++.+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SLHRFAADV--RRFEEHLQHEAEERLQTMVSH 76 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cccccccch--hhHHHHHHHHHHHHHHHHHHH
Confidence 37999999984 889999999888754 2 379999998754211 100000000 000001112222233333221
Q ss_pred C-CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcccchhHHHHHhhcCCCceEEE
Q 047435 464 S-DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 464 ~-~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
. ...+.+++... .++..++|++.|+++++||||||.|++..... .+|++.++|++++||+|.|+
T Consensus 77 ~~~~~~~v~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~-llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 77 FTIDPSRIKQHVR---FGSVRDEVNELAEELGADVVVIGSRNPSISTH-LLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred hCCCCcceEEEEc---CCChHHHHHHHHhhcCCCEEEEcCCCCCccce-ecCccHHHHHHcCCCCEEEe
Confidence 1 13455665543 37899999999999999999999998532111 78999999999999998764
No 28
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.98 E-value=7e-09 Score=98.15 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=90.4
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCcccccc--chhhhhhcccccchHHHHHHHHHhhhcC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAP--YNAQKLRLIREDSTYRIMHAAEKQFRSS 464 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~--~~~~~~~~~~~~~~~~i~~af~~~~~~~ 464 (724)
+||+|++.+++....++.+..++... ...++++|+++.+... +.... ...........+..++.++.+.+..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~--~~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK--GQTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR- 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC--CCcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 48999999999999999999887653 4689999998754221 11000 000000001112234444444333221
Q ss_pred CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccch-hHHHHHhhcCC--CceEEE
Q 047435 465 DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQ-NFDMNIQAHAP--CTVGLL 531 (724)
Q Consensus 465 ~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~-~~~~~Vl~~Ap--CsVgil 531 (724)
.++.++...... .+.++.|++.|++.++|+|+||.|++.. ++. .++ ++.++|+++|| |+|.++
T Consensus 77 -~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~-~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 77 -KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMK-FKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred -cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeec-ccCCchhHHHHhcCCCCceEEEE
Confidence 245555554432 5899999999999999999999998874 321 566 69999999999 998654
No 29
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.93 E-value=6e-09 Score=95.67 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=88.6
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCCC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSDV 466 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 466 (724)
|||+|+++++....+++.+..++.. .+..++++|+++.... + . ....++.++.+.+..++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~----~---------~~~~~~~l~~~~~~~~~~-- 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R----L---------SEAERRRLAEALRLAEEL-- 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c----C---------CHHHHHHHHHHHHHHHHc--
Confidence 6999999999999999999998876 3468999999863211 0 0 112344555555444332
Q ss_pred CeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcC-CCceEEE
Q 047435 467 PFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHA-PCTVGLL 531 (724)
Q Consensus 467 ~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~A-pCsVgil 531 (724)
++. ..+... ++..+.|++.++|.++|+|++|+|++.. ++. .+|++.++|+++| ||+|.|.
T Consensus 62 ~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~-~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 62 GAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL-FRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH-hcccHHHHHHHhCCCCeEEEe
Confidence 232 333333 7899999999999999999999998864 221 7899999999999 9997654
No 30
>PRK09982 universal stress protein UspD; Provisional
Probab=98.89 E-value=8.9e-09 Score=97.26 Aligned_cols=132 Identities=9% Similarity=-0.010 Sum_probs=83.0
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCCC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSDV 466 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 466 (724)
|||+|++.+++....++.+..++.. .+..++++|+++......+.....+.........+..++. ++++.+.. +
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~-~ 78 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNK---LYKLTKNI-Q 78 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHH---HHHHHHhc-C
Confidence 7999999999999999998888764 4578999999875321111000000000000011112222 33332221 1
Q ss_pred CeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 467 PFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 467 ~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
...++.... .++.++.|++.|++.++||||||.| +.. ++ .++ +.++|+++|+|+|.|+
T Consensus 79 ~~~~~~~v~---~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~--~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 79 WPKTKLRIE---RGEMPETLLEIMQKEQCDLLVCGHH-HSFINR--LMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred CCcceEEEE---ecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHH--HHH-HHHHHHhcCCCCEEEe
Confidence 222333332 2799999999999999999999965 432 22 454 9999999999998765
No 31
>PRK15005 universal stress protein F; Provisional
Probab=98.86 E-value=2.4e-08 Score=94.12 Aligned_cols=136 Identities=14% Similarity=0.128 Sum_probs=84.3
Q ss_pred eEEEEeeccCC--hHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcC
Q 047435 387 RIFCGVHFEGN--IRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSS 464 (724)
Q Consensus 387 rILvcv~~~~~--~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 464 (724)
|||+|++.+++ ....++.+..++.. ....++++|+++................. ......++..+.++++.+..
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYSAELP--AMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCcccccccccccccch--HHHHHHHHHHHHHHHHHHHh
Confidence 69999999987 46788887777654 34689999999853221111000000000 00001112222333333221
Q ss_pred -CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcc-cchhHHHHHhhcCCCceEEE
Q 047435 465 -DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTT-NLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 465 -~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~-~~~~~~~~Vl~~ApCsVgil 531 (724)
...++++.... .++..+.|++.|++.++||||+|.|+. . ..+ .+|++..+|++++||+|.++
T Consensus 80 ~~~~~~~~~~v~---~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~-~~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 80 KLPTDRVHVHVE---EGSPKDRILELAKKIPADMIIIASHRP-D-ITTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCCCceEEEEe---CCCHHHHHHHHHHHcCCCEEEEeCCCC-C-chheeecchHHHHHHhCCCCEEEe
Confidence 12344554433 378999999999999999999998843 2 112 78999999999999998764
No 32
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.85 E-value=1.5e-08 Score=95.80 Aligned_cols=134 Identities=12% Similarity=0.048 Sum_probs=84.7
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-|||+|++.+++....++.+..++.. ....++++|+.+......+....... ........++..+.++.+.+..
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~- 77 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGLIDVNL---GDMQKRISEETHHALTELSTNA- 77 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhhhhcch---HHHHHHHHHHHHHHHHHHHHhC-
Confidence 37999999999999999998888754 34689999984321110000000000 0001111223334444544332
Q ss_pred CCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcccchhHHHHHhhcCCCceEEE
Q 047435 466 VPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 466 ~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
++.+..... ..++.++.|++.|++.++||||+|.|++..+ .++++.++|+++|||+|.++
T Consensus 78 -~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~---~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 78 -GYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQDFWS---KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred -CCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCcccHHH---HHHHHHHHHHhhCCCCEEEe
Confidence 333322211 2378999999999999999999999963212 36899999999999998765
No 33
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.84 E-value=2.7e-08 Score=106.09 Aligned_cols=268 Identities=14% Similarity=0.183 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhc
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLS 103 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s 103 (724)
+.+.+.=+.+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ ...+.... +...--+ |+-++
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~n~~~---~~~~~GW--~IP~A 127 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAFNAGG---PEAAHGW--AIPMA 127 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG--SS---TTHHHHT--SSSS-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----HheeecCC---CCcCceE--Eeccc
Confidence 3444444558999999999877653 233433 44566677777642 22222211 1133334 44333
Q ss_pred cccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 104 MTYFSTVADAVSELKL-LTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAVLLV 181 (724)
Q Consensus 104 ~Ts~~vv~~iL~el~l-l~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~~~~ 181 (724)
|..+-...++.=+|- ....+-...++-|++||+.+++++++ +. ++ ....+.....+++. +. +.
T Consensus 128 -TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt--~~--i~~~~L~~a~~~~~-~l---------~~ 192 (378)
T PF06965_consen 128 -TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT--DG--ISLLWLLLAAAALL-LL---------FV 192 (378)
T ss_dssp ---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHHHHHHHHHH-HH---------HH
T ss_pred -ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC--CC--CCHHHHHHHHHHHH-HH---------HH
Confidence 333333344443332 23446678889999999999999988 41 11 12233333322211 11 22
Q ss_pred HHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChh--------hHHHHHHhhhhhhhhhHH
Q 047435 182 VNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLG--------SALVEKCDFVISNILLPF 253 (724)
Q Consensus 182 ~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~--------~~l~ekl~~~~~~~flPl 253 (724)
.+|.. ++....+.++.. ..-+.....|+|+.++..++|+++|..++.+ +++++++++.++.+.+|+
T Consensus 193 l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPl 266 (378)
T PF06965_consen 193 LNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPL 266 (378)
T ss_dssp HHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHh
Confidence 33321 233344444333 3344557799999999999999999875442 478888999998899999
Q ss_pred H-HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhHHHHh
Q 047435 254 F-YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGINEFML 322 (724)
Q Consensus 254 F-F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~ 322 (724)
| |+..|..++-..+... .-.....+++...+||.+|.+..++.. |++|++-..+|++-...=++++.+
T Consensus 267 FAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFI 345 (378)
T PF06965_consen 267 FALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFI 345 (378)
T ss_dssp HHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHH
T ss_pred HhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7899999986654422 112334566777889999888776543 567888888888777777889999
Q ss_pred hhhccc
Q 047435 323 LNRLRV 328 (724)
Q Consensus 323 ~~~~~~ 328 (724)
++.+++
T Consensus 346 a~LAF~ 351 (378)
T PF06965_consen 346 AGLAFD 351 (378)
T ss_dssp HHHHST
T ss_pred HHHHcC
Confidence 999998
No 34
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.8e-06 Score=88.59 Aligned_cols=263 Identities=12% Similarity=0.122 Sum_probs=159.1
Q ss_pred HHHHHHH-HHHHHHhhccChHHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhcc
Q 047435 32 LSTLSGV-YFIFIISVKMDTVKIL---RAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLSM 104 (724)
Q Consensus 32 l~~iGl~-~~lF~~Gle~d~~~l~---~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s~ 104 (724)
.-+=|++ .|.+++|+|+.-+.+. ++++++ ..-++.|++.|.. +...+....+ ...--+ ++-. .
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl----iy~~~n~~~p---~~~~GW--aIP~-A 134 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL----IYLALNAGDP---ATLEGW--AIPM-A 134 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh----HhheeecCCh---hhhcCc--Cccc-H
Confidence 3344544 6778899999887764 334433 3455666777764 2222222211 111112 2221 1
Q ss_pred ccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 105 TYFSTVADAVSELK-LLTSELGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAVLLVV 182 (724)
Q Consensus 105 Ts~~vv~~iL~el~-ll~s~~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~~~~~ 182 (724)
|..+-...++.=+| ...+.+.-..++-|++||+.++++.++ +.. + .+..+...+.++.. ... .++|+
T Consensus 135 TDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~--~--Ls~~al~~a~~~i~--vL~----~lN~~- 203 (390)
T COG3004 135 TDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTT--D--LSMAALGIAALAIA--VLA----VLNRL- 203 (390)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcC--C--ccHHHHHHHHHHHH--HHH----HHHHh-
Confidence 22222233333222 245667778899999999999998888 411 1 11222222222111 111 12221
Q ss_pred HhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC----ChhhHHHHHHhhhhhhhhhHHH-HHH
Q 047435 183 NRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGP----PLGSALVEKCDFVISNILLPFF-YLR 257 (724)
Q Consensus 183 ~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~----p~~~~l~ekl~~~~~~~flPlF-F~~ 257 (724)
. ++....+++...++- ..-..-|+|+.+...+.|+.+|-.. +.-+++++.+.+.+.-+.+|+| |+.
T Consensus 204 ---~----v~~l~~Y~~~gviLW--~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaN 274 (390)
T COG3004 204 ---G----VRRLSPYLLVGVILW--IAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFAN 274 (390)
T ss_pred ---C----chhhhHHHHHHHHHH--HHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHcc
Confidence 1 222334444444442 2335689999999999999999542 3346778888898888999999 788
Q ss_pred hccccc---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhHHHHhhh
Q 047435 258 IGLLTN---VHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGINEFMLLN 324 (724)
Q Consensus 258 ~G~~~d---~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~~ 324 (724)
.|..++ .+.+.++ +...+++..+++|.+|.+..++.. |.+|++-...+++....=.+++.+.+
T Consensus 275 AGvsl~g~~~~~l~s~----l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~ 350 (390)
T COG3004 275 AGVSLQGVSLSGLTSP----LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIAS 350 (390)
T ss_pred CCcccccccccccccc----hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 998887 3444432 345677788899999888887663 67888888888877777788888999
Q ss_pred hccc
Q 047435 325 RLRV 328 (724)
Q Consensus 325 ~~~~ 328 (724)
.+++
T Consensus 351 LAf~ 354 (390)
T COG3004 351 LAFG 354 (390)
T ss_pred HhcC
Confidence 9888
No 35
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.77 E-value=9.9e-09 Score=94.85 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=86.5
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-|||+|+++.++...+++.+..++.. ....++++|+++.................. ...........+ +.....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~-- 76 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEESEEE-AEEEEQARQAEA-EEAEAE-- 76 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHH--
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccccccccccccc-cchhhhhhhHHH-HHHhhh--
Confidence 38999999999999999998888765 447899999999654422110000000000 000000000000 111111
Q ss_pred CCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC--CCcccchhHHHHHhhcCCCceEEE
Q 047435 466 VPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ--GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 466 ~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~--g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
+.... .....+ .+..++|++.+++.++|+||+|.|++.. +. .+|++.+++++++||+|.|+
T Consensus 77 ~~~~~-~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~--~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 77 GGIVI-EVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERL--LFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TTSEE-EEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTS--SSHHHHHHHHHHTSSEEEEE
T ss_pred cccee-EEEEEe--eccchhhhhccccccceeEEEeccCCCCccCC--CcCCHHHHHHHcCCCCEEEe
Confidence 12222 222333 7999999999999999999999998654 32 79999999999999998765
No 36
>PRK10116 universal stress protein UspC; Provisional
Probab=98.68 E-value=1.6e-07 Score=88.28 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=86.3
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-|||++++..++...+++.+..++.. ....++++|+++..... ..+ .... .+.......++..+.++++.+..
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~- 76 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP--VNGKISLITLASDPEMY-NQF-AAPM--LEDLRSVMQEETQSFLDKLIQDA- 76 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH--hCCEEEEEEEccCcccc-hhh-hHHH--HHHHHHHHHHHHHHHHHHHHHhc-
Confidence 47999999999999999998888764 34678999998653211 000 0000 00001111222233344444322
Q ss_pred CCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 466 VPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 466 ~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
+++..... ...++..+.|++.|+|.++||||+|-|++.. .. +.++..+|++++||+|.++
T Consensus 77 -~~~~~~~~--~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~---~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 77 -DYPIEKTF--IAYGELSEHILEVCRKHHFDLVICGNHNHSFFSR---ASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred -CCCeEEEE--EecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH---HHHHHHHHHhcCCCCEEEE
Confidence 33332222 2358999999999999999999999998753 32 3478899999999998776
No 37
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.63 E-value=3e-07 Score=83.89 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=89.9
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCCC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSDV 466 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 466 (724)
|||+|++++++...+++.+..++... ...++++|+.+..+.... .... ....+.++.++.+...... .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~---~~~~-----~~~~~~~~~l~~~~~~~~~--~ 68 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAA---ELAE-----LLEEEARALLEALREALAE--A 68 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcch---hHHH-----HHHHHHHHHHHHHHHHHhc--C
Confidence 69999999999999999999998763 478999999875433221 0000 0112234444444443322 2
Q ss_pred CeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEE
Q 047435 467 PFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGL 530 (724)
Q Consensus 467 ~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgi 530 (724)
+++++..... .+..++|++.+++.++|++|+|++++.. .. ..+++..+++++++||+|.+
T Consensus 69 ~~~~~~~~~~---~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~-~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 69 GVKVETVVLE---GDPAEAILEAAEELGADLIVMGSRGRSGLRR-LLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred CCceEEEEec---CCCHHHHHHHHHHcCCCEEEEcCCCCCccce-eeeccHHHHHHhCCCCCEEe
Confidence 4556555443 3448999999999999999999988754 11 16899999999999999864
No 38
>PRK11175 universal stress protein UspE; Provisional
Probab=98.48 E-value=7.4e-07 Score=95.22 Aligned_cols=144 Identities=13% Similarity=0.010 Sum_probs=87.6
Q ss_pred ceeEEEEeeccCCh-------HHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHH
Q 047435 385 ELRIFCGVHFEGNI-------RSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAA 457 (724)
Q Consensus 385 elrILvcv~~~~~~-------~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af 457 (724)
.-|||+|++..+.. ..+++.+..++... ....++++|+.+..........+... .........++..+.+
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 228 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPEFD--PSVYNDAIRGQHLLAM 228 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccccc--hhhHHHHHHHHHHHHH
Confidence 35899999987543 46778887776542 03579999998754321100000000 0000011112233344
Q ss_pred HHhhhcCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEEecCCC
Q 047435 458 EKQFRSSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLLVDKSS 536 (724)
Q Consensus 458 ~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgilVdrg~ 536 (724)
+++.+.. +++....... .++..+.|++.|+++++|||+||.|++.. ... .+|++.++|++++||+|.++-.+|+
T Consensus 229 ~~~~~~~--~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~-llGS~a~~v~~~~~~pVLvv~~~~~ 303 (305)
T PRK11175 229 KALRQKF--GIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGLSAA-FLGNTAEHVIDHLNCDLLAIKPDGY 303 (305)
T ss_pred HHHHHHh--CCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCCcce-eecchHHHHHhcCCCCEEEEcCCCC
Confidence 4444332 2222212222 37889999999999999999999998864 221 7999999999999999887644443
No 39
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.25 E-value=1.6e-05 Score=73.31 Aligned_cols=126 Identities=12% Similarity=0.158 Sum_probs=80.0
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccccc--chhhhhhhHHHHHHHHHhhcc-CCCceEEEEEEec
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQS--EYDCERHLDEIAINEFITNNI-SNACVACRQVIAK 626 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~--~~~~~~~~d~~~i~~~~~~~~-~~~~v~y~e~~v~ 626 (724)
+|++|.-|.++.+.++++|.+||+.++.+++++|+.+...... ..+...+..++.++.+..... .+..+.+. ...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~ 78 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTI--IRI 78 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEE--EEe
Confidence 5899999999999999999999999999999999986321110 001111222344444433321 12233322 222
Q ss_pred Ch---HHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 627 NT---TEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 627 ~~---~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
++ +++.+..+ +.+.||+|+|++++.. | ...-+|...+.+.. .++++||||+
T Consensus 79 ~~~~~~~I~~~a~--~~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~----~~~~pvlvv~ 132 (132)
T cd01988 79 DHDIASGILRTAK--ERQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLE----SAPCDVAVVK 132 (132)
T ss_pred cCCHHHHHHHHHH--hcCCCEEEEecCCCCC---------c-cceecCchHHHHHh----cCCCCEEEeC
Confidence 22 33444443 2468999999997631 2 23468999999996 5679999985
No 40
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.19 E-value=1e-05 Score=74.54 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=78.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccch-hhhhhhHHHHHHHHH-------hhccCCCceEE
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEY-DCERHLDEIAINEFI-------TNNISNACVAC 620 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~-~~~~~~d~~~i~~~~-------~~~~~~~~v~y 620 (724)
+||++++-|+++.++|+++|.++|++.+++++++++.+........ ..+...+........ ..........+
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVIE 82 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccceeE
Confidence 5999999999999999999999999999999999998642111000 000000000000000 00001122333
Q ss_pred EEEEecCh-HHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 621 RQVIAKNT-TEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 621 ~e~~v~~~-~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
......+. +++.+.++ ..++|++|+|+++.. ++.+ --+|.+.+.++. .++++||||.
T Consensus 83 ~~~~~~~~~~~i~~~~~--~~~~dliv~G~~~~~------~~~~----~~~gs~~~~l~~----~~~~pVlvv~ 140 (140)
T PF00582_consen 83 VVIESGDVADAIIEFAE--EHNADLIVMGSRGRS------GLER----LLFGSVAEKLLR----HAPCPVLVVP 140 (140)
T ss_dssp EEEEESSHHHHHHHHHH--HTTCSEEEEESSSTT------STTT----SSSHHHHHHHHH----HTSSEEEEEE
T ss_pred EEEEeeccchhhhhccc--cccceeEEEeccCCC------CccC----CCcCCHHHHHHH----cCCCCEEEeC
Confidence 33333343 34444444 367999999999842 2222 249999999997 4668999984
No 41
>PRK09982 universal stress protein UspD; Provisional
Probab=98.11 E-value=2.3e-05 Score=73.87 Aligned_cols=124 Identities=11% Similarity=0.115 Sum_probs=77.2
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccc---c---cc-hh---hhhhhHHHHHHHHHhhccCCCc
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDE---Q---SE-YD---CERHLDEIAINEFITNNISNAC 617 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~---~---~~-~~---~~~~~d~~~i~~~~~~~~~~~~ 617 (724)
.++|++|.-|+++.+.|++.|.++|+.++++++++++++.... . .. ++ ..++.-++.+++...... ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 3689999999999999999999999999999999999853110 0 00 00 111112234555554332 122
Q ss_pred eEEEEEEecChHHHHHHHHhh--cCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 618 VACRQVIAKNTTEVIDVIRRM--DGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 618 v~y~e~~v~~~~~~~~~i~~~--~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
+. ..+..|+ ..+.|.+. +.+.||+|+|+++ + |+..| +| +.+-+.. .++++||||.
T Consensus 82 ~~---~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~~---~----~~~~~-----~~-va~~V~~----~s~~pVLvv~ 138 (142)
T PRK09982 82 TK---LRIERGE-MPETLLEIMQKEQCDLLVCGHHH---S----FINRL-----MP-AYRGMIN----KMSADLLIVP 138 (142)
T ss_pred ce---EEEEecC-HHHHHHHHHHHcCCCEEEEeCCh---h----HHHHH-----HH-HHHHHHh----cCCCCEEEec
Confidence 32 2233342 22333333 3569999999753 2 56565 35 7777775 5779999985
No 42
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.11 E-value=3.7e-05 Score=72.58 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=79.9
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccc--------h---hhhhhhHHHHHHHHHhhccCCCce
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSE--------Y---DCERHLDEIAINEFITNNISNACV 618 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~--------~---~~~~~~d~~~i~~~~~~~~~~~~v 618 (724)
+|++++-|.+..+.|+++|.++++.++.+++++++++....... + ++.++.-++.++++..... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 48999999999999999999999999999999999753111000 0 0111222344555544321 1234
Q ss_pred EEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccc-hhhhhhhcCCCCCCcccEEEEEe
Q 047435 619 ACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELG-VIGDTLASVDFCKGMTSVLVIQC 694 (724)
Q Consensus 619 ~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG-~igd~las~d~~~~~~svLvvqq 694 (724)
.+....+..+ +..+.|-+.+ .+.||+|+|+++.. |+..+ -+| .+.+.+... ++..++|||||.
T Consensus 80 ~~~~~~~~g~-~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l~~~----~~gssva~~Vi~~--a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDD-DVAKAIVEYVADHGITKLVMGASSDN------HFSMK----FKKSDVASSVLKE--APDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCC-cHHHHHHHHHHHcCCCEEEEeccCCC------ceeec----ccCCchhHHHHhc--CCCCceEEEEeC
Confidence 4444444332 2233333333 44799999998642 33322 366 699999964 122389999985
No 43
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.10 E-value=0.00024 Score=74.28 Aligned_cols=255 Identities=14% Similarity=0.099 Sum_probs=145.7
Q ss_pred HHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhccccHHHHHHHHHh
Q 047435 37 GVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLSMTYFSTVADAVSE 116 (724)
Q Consensus 37 l~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~iL~e 116 (724)
+..++|..|-.+|++...+..||...+-+.-+.++.+++.+++.+++.... ...+.+.+ -.+++.|.-..=..+..|
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~-~Gls~lai--iaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGI-FGLSGLAI--VAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccc-cchHHHHH--HHHHhcCcHHHHHHHHHH
Confidence 346889999999999998888888888888889999999999888874311 11344444 556666666666667777
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHH
Q 047435 117 LKLLTSELGQLAMSSSMLAELLGWIALMAEAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYV 196 (724)
Q Consensus 117 l~ll~s~~G~lals~a~i~D~~~~ill~i~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~ 196 (724)
+| -++|.|-..+. .++|. ++..++. +.. .++ .+.| .
T Consensus 128 yG-~~~d~gA~~~~--sl~~G------------------Pf~tm~a---Lga----------~gL-A~ip---------~ 163 (312)
T PRK12460 128 FG-DERDVGAISIL--SLNDG------------------PFFTMLA---LGA----------AGL-ANIP---------I 163 (312)
T ss_pred cC-CHhhhhHHhhh--hhccC------------------cHHHHHH---HHH----------HHH-hcCC---------h
Confidence 77 34555532211 12221 1111111 110 011 1111 0
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHH
Q 047435 197 IGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAAL 276 (724)
Q Consensus 197 ~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~ 276 (724)
...+. .+=|++.|+++.+..+ .+.+.+++= ..+.+|+|.+..|.++|++++.+. .+. .
T Consensus 164 ~~lv~----------------lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~-G~~-G 221 (312)
T PRK12460 164 MALVA----------------ALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA-GLA-G 221 (312)
T ss_pred HHHHH----------------HHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh-ChH-H
Confidence 00011 1225567777776532 233444442 456899999999999999988643 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHH--HHhhhhhhHHHHhhhhccccccCCChhhHHH-HHHHHHHHHHHHH
Q 047435 277 ETILVGAYVGKLVGSLCTVLFFGTSLRFGILFS--FILNVKGINEFMLLNRLRVNFKTIDEASYAT-MVLSHLAVNAIVT 353 (724)
Q Consensus 277 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~-lv~~~ll~t~i~~ 353 (724)
+++.++..+.-...++...|++|.+.+-+..+| ..-+.=|...++.+.=.++ -. .+.-++ +..++++|.+++|
T Consensus 222 IlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~---~~-~~~Ataqvaa~vivTail~P 297 (312)
T PRK12460 222 ILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLA---PV-AAAATAQVAASVIVTAILTP 297 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHH---HH-HHHHHHHHHHHHHHHHHHHH
Confidence 333333344455566666688898888877776 4444334444433332222 11 233344 3445666666677
Q ss_pred HHHHHhcCccc
Q 047435 354 PIICIYHKPQT 364 (724)
Q Consensus 354 ~l~~~l~~p~~ 364 (724)
.+..|++|+.+
T Consensus 298 ~~t~~~~k~~~ 308 (312)
T PRK12460 298 LLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHHHhc
Confidence 77788776443
No 44
>PRK15005 universal stress protein F; Provisional
Probab=98.07 E-value=4.9e-05 Score=71.46 Aligned_cols=127 Identities=12% Similarity=0.103 Sum_probs=79.3
Q ss_pred eEEEEeecCCcc--hHHHHHHHHHHhcCCCeEEEEEEEeecccc---------ccc--hhhhhhhHHHHHHHHHhhccCC
Q 047435 549 YSLVVLFLGGAD--DREALALVSRMSGHPGLSITVFRITVIEDE---------QSE--YDCERHLDEIAINEFITNNISN 615 (724)
Q Consensus 549 ~~I~v~f~GG~d--dreAL~~a~rma~~~~~~ltv~r~~~~~~~---------~~~--~~~~~~~d~~~i~~~~~~~~~~ 615 (724)
++|++|+-|.++ .+.|+++|.++|+..+++++++|+++.... .+. .+..++.-++.++++..+...
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 81 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL- 81 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC-
Confidence 589999999887 479999999999999999999999853110 000 011111222445555544321
Q ss_pred CceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 616 ACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 616 ~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
..+.+.. .+..|+ ..+.|.+.+ .++||+|+|++++ |+.+| -+|...+.+.. .++++||||.
T Consensus 82 ~~~~~~~-~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~----~a~cpVlvVr 144 (144)
T PRK15005 82 PTDRVHV-HVEEGS-PKDRILELAKKIPADMIIIASHRP-------DITTY----LLGSNAAAVVR----HAECSVLVVR 144 (144)
T ss_pred CCCceEE-EEeCCC-HHHHHHHHHHHcCCCEEEEeCCCC-------Cchhe----eecchHHHHHH----hCCCCEEEeC
Confidence 2222323 234443 233333333 5799999997742 33332 48999999997 5778999984
No 45
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.95 E-value=0.00073 Score=70.37 Aligned_cols=200 Identities=17% Similarity=0.224 Sum_probs=115.1
Q ss_pred CeEEEcccccCCcccccccccCcc------chHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHH
Q 047435 1 GGIVLGPSVLSRNKIIMDTIFPRR------EMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMI 74 (724)
Q Consensus 1 aGiiLGPs~Lg~~~~~~~~~f~~~------~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~ 74 (724)
+|+.+=|..+|- ..+++||.- -...+-+=+..=+..++|-.|-++|++...+.-||...+-+.-+++..++
T Consensus 12 GG~mvVPLllga---linTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~l 88 (314)
T PF03812_consen 12 GGMMVVPLLLGA---LINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALL 88 (314)
T ss_pred CceeHHHHHHHH---HHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 466667776664 123344421 11112121222334688999999999999999999998989999999999
Q ss_pred HHHHHHHhhhcCC--C--cchhHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047435 75 AMFLSRILSDYTP--G--VERGLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMAEAVFN 150 (724)
Q Consensus 75 g~~~~~~l~~~~~--~--~~~~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i~~~~~ 150 (724)
+.+++.+++...- + ...+.+.+ -.+++.+.-..=..+..|+| -++|.|-.. ..-++|.=.+.++++
T Consensus 89 gl~~~~~fg~~Gi~~g~f~GlS~LAi--iaa~~~~NggLY~aL~~~yG-d~~D~gA~~--i~sl~~GPf~tMl~L----- 158 (314)
T PF03812_consen 89 GLLVGKFFGPEGIQSGFFLGLSALAI--IAAMTNSNGGLYLALMGQYG-DEEDVGAFS--ILSLNDGPFFTMLAL----- 158 (314)
T ss_pred HHHHHHHcCccccccccccchHHHHH--HHHHhcCCHHHHHHHHHHhC-CHHHhHHHH--HHHhhhhHHHHHHHH-----
Confidence 9999888875310 0 12344444 55666666666666667777 344444222 222233222111111
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCC
Q 047435 151 KSLGHKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPA 230 (724)
Q Consensus 151 ~~~~~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~ 230 (724)
.. . | ..+..+...+ ..+=+++.|+++.+
T Consensus 159 ----------------G~-----------------s-G--~a~ip~~~lv----------------~~llP~iiG~iLGN 186 (314)
T PF03812_consen 159 ----------------GA-----------------S-G--LANIPWMSLV----------------AALLPIIIGMILGN 186 (314)
T ss_pred ----------------hh-----------------c-c--ccCCCHHHHH----------------HHHHHHHHHHHHhc
Confidence 00 0 0 0000010110 12336788888887
Q ss_pred CCChhhHHHHHHhhhhhhhhhHHHHHHhccccccccccc
Q 047435 231 GPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKN 269 (724)
Q Consensus 231 ~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~ 269 (724)
..| ++.+-+.+ ....++|+|-...|..+|+..+..
T Consensus 187 LD~---~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i~~ 221 (314)
T PF03812_consen 187 LDP---DFRKFLAP-GVPILIPFFGFALGAGINLSNIIK 221 (314)
T ss_pred CCH---HHHHHHhc-CCCeeeehhhhhhcCCCCHHHHHH
Confidence 644 33333334 357899999999999999988764
No 46
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.89 E-value=0.00026 Score=66.71 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=87.7
Q ss_pred eeEEEEee-ccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccc-hhhh--hhcccccchHHHHHHHHHhh
Q 047435 386 LRIFCGVH-FEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPY-NAQK--LRLIREDSTYRIMHAAEKQF 461 (724)
Q Consensus 386 lrILvcv~-~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~-~~~~--~~~~~~~~~~~i~~af~~~~ 461 (724)
.+||++++ +.+......+.+...+.... ..++++++++............ .... .........++..+..+...
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLG--APLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcC--CeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 47999999 88888888888888776533 4566788877554322211110 0000 00001223355555555544
Q ss_pred hcCCCCeE-EEEeEEEcCCCCh-HHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 462 RSSDVPFT-ILPYKMIAPYDTM-HESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 462 ~~~~~~v~-v~~~~~vs~~~~m-~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
+.. .+. ++....- .+. .+.|+..|.+.++|+|++|.+++.. .+. .+|++.++|++++||+|.++
T Consensus 84 ~~~--~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~-llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 84 EAA--GVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGLSRL-LLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHc--CCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCccccce-eeehhHHHHHhcCCCCEEEE
Confidence 432 222 2333222 555 6999999999999999999997765 221 79999999999999997655
No 47
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.85 E-value=0.00022 Score=64.65 Aligned_cols=127 Identities=11% Similarity=0.155 Sum_probs=79.6
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccccc--chhhhhhhHHHHHHHHHhhcc-CCCceEEEEEEec
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQS--EYDCERHLDEIAINEFITNNI-SNACVACRQVIAK 626 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~--~~~~~~~~d~~~i~~~~~~~~-~~~~v~y~e~~v~ 626 (724)
+|++++-+++..+.++++|.++|+..+.+++++++.+...... ..+.+....++.++++..... .+.++.+.-..-.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD 80 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 5889999999999999999999999999999999875421110 001122223456666665431 1233433322111
Q ss_pred ChHHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEE
Q 047435 627 NTTEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVI 692 (724)
Q Consensus 627 ~~~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvv 692 (724)
...++.+.++ ..++|++|+|.++.. .|. .--.|.+.+.|.. .++++||++
T Consensus 81 ~~~~i~~~~~--~~~~dlvvig~~~~~---------~~~-~~~~~~~~~~ll~----~~~~pvliv 130 (130)
T cd00293 81 PAEAILEAAE--ELGADLIVMGSRGRS---------GLR-RLLLGSVAERVLR----HAPCPVLVV 130 (130)
T ss_pred CHHHHHHHHH--HcCCCEEEEcCCCCC---------ccc-eeeeccHHHHHHh----CCCCCEEeC
Confidence 2234444444 356899999998652 221 1357899999986 356788874
No 48
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.76 E-value=0.00013 Score=68.71 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=76.6
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecc-cc------ccchhhhh---hhHHHHHHHHHhhccCCCc
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIE-DE------QSEYDCER---HLDEIAINEFITNNISNAC 617 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~-~~------~~~~~~~~---~~d~~~i~~~~~~~~~~~~ 617 (724)
.++|+++.-|.++.+.|+++|..+|+..+++++++++.... .. ...++.++ +.-++.++++.... .
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 36899999999999999999999999999999999984210 00 00000011 11112334433322 1
Q ss_pred eEEEEEEecCh---HHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEEe
Q 047435 618 VACRQVIAKNT---TEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQC 694 (724)
Q Consensus 618 v~y~e~~v~~~---~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvqq 694 (724)
+...+..+..| +++.+..+ +.+.||+|+|++++ ++. .+|...+.+.. .++++||||..
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~--~~~~DLIV~Gs~~~-------~~~------~lgSva~~v~~----~a~~pVLvv~~ 139 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIK--KYDMDLVVCGHHQD-------FWS------KLMSSARQLIN----TVHVDMLIVPL 139 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHH--HhCCCEEEEeCccc-------HHH------HHHHHHHHHHh----hCCCCEEEecC
Confidence 22223333334 33333333 35799999999842 111 26888888886 57799999985
No 49
>PRK15456 universal stress protein UspG; Provisional
Probab=97.75 E-value=0.00038 Score=65.41 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=77.4
Q ss_pred eEEEEeecCCc--chHHHHHHHHHHhcCCCeEEEEEEEeeccccc------cc-hhh---hhhhHHHHHHHHHhhccCCC
Q 047435 549 YSLVVLFLGGA--DDREALALVSRMSGHPGLSITVFRITVIEDEQ------SE-YDC---ERHLDEIAINEFITNNISNA 616 (724)
Q Consensus 549 ~~I~v~f~GG~--ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~------~~-~~~---~~~~d~~~i~~~~~~~~~~~ 616 (724)
++|++|.-|.+ ..+.|+++|..+|+.. ..++++|+++..... .. ++. .++.-++.++++...... .
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 80 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI-D 80 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 58999999984 7899999999999875 589999998632110 00 001 112223445555543321 2
Q ss_pred ceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 617 CVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 617 ~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
.+.+. ..+..|+ ..+.|.+.+ .+.||+|+|++++ |+.+ .-+|...+.+.. .++++||||.
T Consensus 81 ~~~v~-~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~-------~~~~----~llGS~a~~v~~----~a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIK-QHVRFGS-VRDEVNELAEELGADVVVIGSRNP-------SIST----HLLGSNASSVIR----HANLPVLVVR 142 (142)
T ss_pred CcceE-EEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCC-------Cccc----eecCccHHHHHH----cCCCCEEEeC
Confidence 22222 2233442 333333333 5789999999853 2222 248999999997 5779999984
No 50
>PRK10116 universal stress protein UspC; Provisional
Probab=97.74 E-value=0.00016 Score=67.89 Aligned_cols=126 Identities=10% Similarity=0.102 Sum_probs=76.0
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccc--cc-c---hhhhh---hhHHHHHHHHHhhccCCCce
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDE--QS-E---YDCER---HLDEIAINEFITNNISNACV 618 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~--~~-~---~~~~~---~~d~~~i~~~~~~~~~~~~v 618 (724)
.++|+++.-+.++...|+++|.++|+..+++++++++++.... .. . ++.++ +.-++.++++..+. .+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 3689999999999999999999999999999999998743110 00 0 00111 11123344443332 12
Q ss_pred EEEEEEecChHHHHHHHHhh-cCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 619 ACRQVIAKNTTEVIDVIRRM-DGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 619 ~y~e~~v~~~~~~~~~i~~~-~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
......+..|..-..+++.. +.++||+|+|.++.. +++.| +..++.+.. .++++||||.
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~----~~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIA----SSEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHh----cCCCCEEEEe
Confidence 22223344443333333322 247999999998642 33333 345777775 5779999995
No 51
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.70 E-value=0.00028 Score=64.48 Aligned_cols=121 Identities=14% Similarity=0.178 Sum_probs=76.5
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEecChH
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIAKNTT 629 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~ 629 (724)
||++++-|.+..++|+++|.++|++.+..++++++.+.+..... +. .++.++++++... ...+.+. .+.++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~-~~----~~~~l~~~~~~~~-~~~~~~~--~~~~~- 71 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLS-EA----ERRRLAEALRLAE-ELGAEVV--TLPGD- 71 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCC-HH----HHHHHHHHHHHHH-HcCCEEE--EEeCC-
Confidence 58999999999999999999999999999999999864321100 11 1233444443321 1123332 22232
Q ss_pred HHHHHHHhh--cCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEE
Q 047435 630 EVIDVIRRM--DGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVI 692 (724)
Q Consensus 630 ~~~~~i~~~--~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvv 692 (724)
+..+.|-+. +.+.|++|+|.++.. ++.+ --+|...+.+... ..++.|||+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~------~~~~----~~~Gs~~~~v~~~---a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRS------RWRE----LFRGSLVDRLLRR---AGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCc------hHHH----HhcccHHHHHHHh---CCCCeEEEe
Confidence 223333333 256899999999752 2222 2589999999963 237899986
No 52
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.37 E-value=0.0019 Score=70.07 Aligned_cols=132 Identities=17% Similarity=0.038 Sum_probs=84.2
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhc--
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRS-- 463 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-- 463 (724)
-|||+|++.+++....++.+..+++..+...+++++|+++...... ..+ ......+++++..++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~~~------~~~~~~eelle~~~~~~~~~l 75 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----EGQ------DELAAAEELLERVEVWATEDL 75 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----chh------HHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999998886521247999999988432110 110 0112234455555444332
Q ss_pred --CCCCeEEEEeEEEc-----CCCChHHHHHHHHHhcCCCEEEeccccCCCCCcccchhHHHHHhhcCCCce
Q 047435 464 --SDVPFTILPYKMIA-----PYDTMHESICELVKEKFIPLVVLPFNKKRQGRTTNLQNFDMNIQAHAPCTV 528 (724)
Q Consensus 464 --~~~~v~v~~~~~vs-----~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~~ApCsV 528 (724)
...++++++..... ..++.++.|++.|+|+++|+||||=..+..|+.-+++.+-.. |.++-|++
T Consensus 76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 146 (357)
T PRK12652 76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLERE-LARAGITY 146 (357)
T ss_pred hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHHH-HHhcCCce
Confidence 11356676665442 127999999999999999999999765553221145554443 56666663
No 53
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.34 E-value=0.0097 Score=61.77 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=57.7
Q ss_pred HHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--Cc--chhHHHHHhhhhhccccHHHHHHH
Q 047435 38 VYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTP--GV--ERGLFRLYFTSLLSMTYFSTVADA 113 (724)
Q Consensus 38 ~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~--~~--~~~~l~l~~~~~~s~Ts~~vv~~i 113 (724)
..++|..|-.+|++...+..||...+-+.-+.++.+++.+++.+++...- +. ..+.+.+ -.+++.|.-..=..+
T Consensus 52 ~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAi--iaA~~nsNggLY~aL 129 (314)
T TIGR00793 52 AVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLAL--VAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHH--HHHHhCCcHHHHHHH
Confidence 46889999999999988888888888788888999999999888875320 00 1334444 445555555555555
Q ss_pred HHhccccCChhH
Q 047435 114 VSELKLLTSELG 125 (724)
Q Consensus 114 L~el~ll~s~~G 125 (724)
..|+| -++|.|
T Consensus 130 ~~qyG-d~~D~g 140 (314)
T TIGR00793 130 MQQYG-TKEEAG 140 (314)
T ss_pred HHHcC-CHhhhh
Confidence 66666 244444
No 54
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=97.30 E-value=9.4e-05 Score=82.29 Aligned_cols=312 Identities=14% Similarity=0.098 Sum_probs=171.8
Q ss_pred HHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--hcCC-CcchhHHHHHhhhhhccccHHHHHHHHHh
Q 047435 40 FIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILS--DYTP-GVERGLFRLYFTSLLSMTYFSTVADAVSE 116 (724)
Q Consensus 40 ~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~--~~~~-~~~~~~l~l~~~~~~s~Ts~~vv~~iL~e 116 (724)
++|-+|.-|.-+.+..|....+..+..|.+.-.+.-.+.-+.+. ..+. +. ...-.++||...|...+..|..+.+|
T Consensus 109 IvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~-glld~LlFgSLIsAVDPVAVLaVFEE 187 (670)
T KOG1966|consen 109 IVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSI-GLLDILLFGSLISAVDPVAVLAVFEE 187 (670)
T ss_pred HHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-hHHHHHHHHHHHHhcCchhhhhhhhh
Confidence 45677888888888888888888888887774332222112221 1121 11 22233345888888887778888899
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hh-ccCCc---h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 047435 117 LKLLTSELGQLAMSSSMLAELLGWIALMA-E-AV-FNKSL---G---HKAESSLCLIGLLFFSFLVVRPAVLLVVNRTPE 187 (724)
Q Consensus 117 l~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~-~~~~~---~---~~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~ 187 (724)
.. .|.-+=-++-+.+++||.+.+++.-+ . +. -+... . .....+....+..++++.++..+.....|.+.
T Consensus 188 ih-VNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~- 265 (670)
T KOG1966|consen 188 IH-VNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTK- 265 (670)
T ss_pred hc-cccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhc-
Confidence 88 46656677889999999999888755 3 21 11111 0 00000000000111111111112222223322
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-----ChhhHHHHHHhhhhhhhhhHHHHHHhcccc
Q 047435 188 GKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGP-----PLGSALVEKCDFVISNILLPFFYLRIGLLT 262 (724)
Q Consensus 188 ~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~-----p~~~~l~ekl~~~~~~~flPlFF~~~G~~~ 262 (724)
+ ++-...++++.+...++..+|+++++++++--+.|+++...- .....-++..-...+..--++-|.+.|..+
T Consensus 266 ~--vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~ 343 (670)
T KOG1966|consen 266 H--VRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST 343 (670)
T ss_pred c--eeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence 1 233345678888999999999999999999999999987531 111111222222234455567777778765
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChh
Q 047435 263 NVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF------GTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEA 336 (724)
Q Consensus 263 d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~ 336 (724)
-=. -..+ .|.++.+-++...+.|.+++...+++. +++..|-+.++. =+-||.+...+.-.--. ..+....
T Consensus 344 v~~-~h~w-d~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~-~~vp~K~ 419 (670)
T KOG1966|consen 344 VSS-NHHW-DFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDG-AKVPAKN 419 (670)
T ss_pred cCC-ccee-ehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEecc-ccCCccc
Confidence 322 2222 344555555666666777766666654 456666654433 34566665554332221 2222223
Q ss_pred hH-----HHHHHHHHHHHHHHHHHHHHhc
Q 047435 337 SY-----ATMVLSHLAVNAIVTPIICIYH 360 (724)
Q Consensus 337 ~~-----~~lv~~~ll~t~i~~~l~~~l~ 360 (724)
.| .++.+.+.+-.+..-|+++++-
T Consensus 420 ~Fvttti~VIfFTVflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 420 MFVTTTIAVIFFTVFLQGITIKPLVKFLK 448 (670)
T ss_pred ceEeeeeEEEeeeeeecccchHHHHHHHc
Confidence 32 2223333343444578888875
No 55
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.15 E-value=0.33 Score=51.45 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHH---Hhhhh
Q 047435 28 VINTLSTLSGVYFIFIISVKMDTVKILRAAK---HTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRL---YFTSL 101 (724)
Q Consensus 28 ~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k---~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l---~~~~~ 101 (724)
.+...-.+.+.++||..|+.+..+.+++..| ........++.+--+++++++..+.. ...+.. +++++
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l------~~~l~~Gl~ll~~~ 108 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPL------PPELAVGLLLLGCC 108 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHhHHheeeC
Confidence 3443458889999999999999998876554 44444445554444456666665542 122223 11333
Q ss_pred hccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H--HhccCCc---hhHHHHHHHHHHHHHHHHHHHH
Q 047435 102 LSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E--AVFNKSL---GHKAESSLCLIGLLFFSFLVVR 175 (724)
Q Consensus 102 ~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~--~~~~~~~---~~~l~~~~~~~~f~~~~~~v~r 175 (724)
=+.|+. .+...+.. .+. -++++.+.++.+++.++.-+ + +.++... +..++.++..++.=.+...+.|
T Consensus 109 Pggv~S-~~~t~lAk-----GnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r 181 (319)
T COG0385 109 PGGVAS-NAMTYLAK-----GNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLR 181 (319)
T ss_pred CCchhH-HHHHHHhc-----CcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 33333332 222 46677788888888887766 4 3332221 3334444444433345566777
Q ss_pred HHHHHHHHhC
Q 047435 176 PAVLLVVNRT 185 (724)
Q Consensus 176 ~~~~~~~~~~ 185 (724)
|......++.
T Consensus 182 ~~~~~~~~~~ 191 (319)
T COG0385 182 PLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHH
Confidence 7776555553
No 56
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.86 E-value=0.0096 Score=64.66 Aligned_cols=124 Identities=10% Similarity=0.047 Sum_probs=76.1
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCC--CeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhcc-----CCCceEE
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHP--GLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNI-----SNACVAC 620 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~--~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~-----~~~~v~y 620 (724)
.++|++|+-|.+..+.|+++|..+|+.. +++++++++++........+...+..++.+++.++... ....+.+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 4699999999999999999999999884 69999999986421110001111112233333333211 1124555
Q ss_pred EEEEecC-------hHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCC
Q 047435 621 RQVIAKN-------TTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDF 682 (724)
Q Consensus 621 ~e~~v~~-------~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~ 682 (724)
...++.. | +..+.|.+.+ +++||+|+|..-...+ --|.|.++.-.|++.+.
T Consensus 85 e~~vv~~~~~~~~~G-~pae~Iv~~Aee~~aDLIVm~~~~~~~~----------~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 85 ETALLGTDEYLFGPG-DYAEVLIAYAEEHGIDRVVLDPEYNPGG----------TAPMLQPLERELARAGI 144 (357)
T ss_pred EEEEEeccccccCCC-CHHHHHHHHHHHcCCCEEEECCCCCCCC----------CCcccchHHHHHHhcCC
Confidence 4444331 2 2233333333 5699999999864322 25789999999998765
No 57
>PRK10490 sensor protein KdpD; Provisional
Probab=96.48 E-value=0.02 Score=70.30 Aligned_cols=124 Identities=8% Similarity=0.017 Sum_probs=85.4
Q ss_pred CCceeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhh
Q 047435 383 SSELRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFR 462 (724)
Q Consensus 383 ~~elrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 462 (724)
....||||||+...+...+++-+..++... ...++++||.....+ .. .....+++.+.++ +++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~--~~------------~~~~~~~l~~~~~-lA~ 310 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARL--GSVWHAVYVETPRLH--RL------------PEKKRRAILSALR-LAQ 310 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcC--cC------------CHHHHHHHHHHHH-HHH
Confidence 356789999999999999999998888763 467999998542111 10 1122344555553 555
Q ss_pred cCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcccchhHHHHHhhcCC-CceEEE
Q 047435 463 SSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTTNLQNFDMNIQAHAP-CTVGLL 531 (724)
Q Consensus 463 ~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~~Ap-CsVgil 531 (724)
+.++. +... ..+++++.|.+.|++++++.||||-.++.. -. .-+++.+++++.+| -+|-|+
T Consensus 311 ~lGa~--~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~-~~-~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 311 ELGAE--TATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRR-WW-RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred HcCCE--EEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCC-Cc-cCCCHHHHHHHhCCCCCEEEE
Confidence 44333 2221 237999999999999999999999876542 10 12589999999997 566555
No 58
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.41 E-value=0.29 Score=53.74 Aligned_cols=277 Identities=13% Similarity=0.132 Sum_probs=144.7
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHh------hccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhH
Q 047435 20 IFPRREMMVINTLSTLSGVYFIFIIS------VKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGL 93 (724)
Q Consensus 20 ~f~~~~~~~l~~l~~iGl~~~lF~~G------le~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~ 93 (724)
++|++..+....+-+-+=.+.+|.+. +.||-+.+.|...|-+..-+.+.+..++++.+++.+++..+. ...
T Consensus 77 ~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~---~~i 153 (414)
T PF03390_consen 77 LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK---DAI 153 (414)
T ss_pred CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHH
Confidence 45555555444444332223334433 478999999999988888888888888888888888876431 222
Q ss_pred HHHHhhhh-h----ccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-HhccC---C-ch------hH
Q 047435 94 FRLYFTSL-L----SMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFNK---S-LG------HK 156 (724)
Q Consensus 94 l~l~~~~~-~----s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~~---~-~~------~~ 156 (724)
+++ ++- + ..-+.|...-.=+-++.-.+++=..++.+.++.++++++.-.+ - +.... + ++ ..
T Consensus 154 ~~i--~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~ 231 (414)
T PF03390_consen 154 FYI--VLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDD 231 (414)
T ss_pred HHH--HhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCcc
Confidence 222 111 1 1111222111111233333334344555666666666665555 2 22110 0 00 10
Q ss_pred -HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 047435 157 -AE-----------SSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIV 224 (724)
Q Consensus 157 -l~-----------~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFla 224 (724)
.. .-...-.++.+.+|....+. ...+++|...--.++
T Consensus 232 ~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll-------------------------------~~~i~ih~~a~mIi~ 280 (414)
T PF03390_consen 232 EEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLL-------------------------------SKLIGIHAYAWMIIL 280 (414)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-------------------------------HHhcCCcHHHHHHHH
Confidence 00 00111112222222222222 333444433222222
Q ss_pred HhhcCC---CCChhhHHHHHHhhhhhhhhhHHHHHHhccc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 047435 225 GLIVPA---GPPLGSALVEKCDFVISNILLPFFYLRIGLL-TNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGT 300 (724)
Q Consensus 225 Gl~~~~---~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~-~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 300 (724)
=.++.- -|+.-++=..+...+...-+.|...+.+|+. +|+..+.+.-++. -+++++...++-.+++++.+++.|+
T Consensus 281 ~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~ 359 (414)
T PF03390_consen 281 VAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGF 359 (414)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 221111 1222233344566666777777788888998 9998876533443 3445556666778889999999998
Q ss_pred ChhHH-HHHHHHhhhh-hhHHHHhhhhccccccCCC
Q 047435 301 SLRFG-ILFSFILNVK-GINEFMLLNRLRVNFKTID 334 (724)
Q Consensus 301 ~~~~~-~~lg~~m~~k-G~~~l~~~~~~~~~~~~i~ 334 (724)
-+-|+ +.-|+.|+.+ |.=++++.+.+.. .+++.
T Consensus 360 YPvEsAItaGLC~an~GGtGDvAVLsAa~R-M~Lmp 394 (414)
T PF03390_consen 360 YPVESAITAGLCMANMGGTGDVAVLSAANR-MELMP 394 (414)
T ss_pred ChHHHHHHhhhcccCCCCCCcchheehhhh-ccccc
Confidence 65555 5666567554 5567777777666 66554
No 59
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.41 E-value=0.088 Score=55.29 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhh-HHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHH
Q 047435 202 LPIAMGALTDMLGVSFALGALIVGLIVPAGPPLGS-ALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETIL 280 (724)
Q Consensus 202 ~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~~-~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii 280 (724)
.....+.+++.++++.++|-.++|+++.... ++. .-.+-++.+ ..+-+.++....|+++|+..+... +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL--RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence 3455678899999999999999999986431 110 011234444 456677888889999999887643 22222222
Q ss_pred HHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHH
Q 047435 281 VGAYVGK-LVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAV 348 (724)
Q Consensus 281 ~~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~ 348 (724)
+..++.- ++.++...++++.++.+++.+|..+++-.. -+.+.+..+ .+..+.+.-..++-.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~-~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKE-RGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHH-cCcccChHHHHHHHHHHHH
Confidence 3333333 344455667789999999999998886532 233444445 5665555444433333333
No 60
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.41 E-value=1.3 Score=47.49 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhh----
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKILRAAKHT---WFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLL---- 102 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~---- 102 (724)
+....+++..++|..|+.++.+++++..++. ...-...+++.-++++++...+.... ...+.. |...
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~----~~~l~~--Gl~~~~~l 103 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL----PPELAL--GLLILACL 103 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC----CHHHHH--HHHHHhhC
Confidence 5677888889999999999999998765544 22223334433345666665554322 122333 3332
Q ss_pred ccc-cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 047435 103 SMT-YFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA 145 (724)
Q Consensus 103 s~T-s~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i 145 (724)
-.| +..++.. . ..+.+. ..++..+.++.+++.++.-+
T Consensus 104 PtTv~S~v~~T---~--~AgGN~-a~Al~~~~~snllgv~ltP~ 141 (313)
T PF13593_consen 104 PTTVSSSVVLT---R--LAGGNV-ALALFNAVLSNLLGVFLTPL 141 (313)
T ss_pred CchhhHHHHHH---H--HcCCCH-HHHHHHHHHHhhhhHhHHHH
Confidence 222 3333322 1 222222 45666777888888877766
No 61
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.31 E-value=0.098 Score=61.58 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-CChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHH
Q 047435 196 VIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAG-PPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFA 274 (724)
Q Consensus 196 ~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~-~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~ 274 (724)
..+.++...++..++..+|+++++|=.++|+++... ..+-.. .+.++.+ ..+-+.++.+.+|+++|+..+... ..
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWKL--RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence 445556667788889999999999999999998542 111111 2335554 577777888889999999887542 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 047435 275 ALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKG 316 (724)
Q Consensus 275 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG 316 (724)
.++.+...-++.-.+..+..+.++|.++..++.+|..++.-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 122222222222233334556778999999999988775443
No 62
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.24 E-value=1.3 Score=46.84 Aligned_cols=51 Identities=8% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhh--HHHHHHHH-HH-HHHHHHHHHHHHHhh
Q 047435 32 LSTLSGVYFIFIISVKMDTVKILRAAK--HTWFITIA-CL-VIPYMIAMFLSRILS 83 (724)
Q Consensus 32 l~~iGl~~~lF~~Gle~d~~~l~~~~k--~~~~i~~~-~~-lip~~~g~~~~~~l~ 83 (724)
+....+.+.||..|+.++.+.+++..| +...++.. .+ +.|++ +++++.+++
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~ 63 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFK 63 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhC
Confidence 334448889999999999999988766 34444443 34 44554 466655554
No 63
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.23 E-value=2.6 Score=46.48 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 047435 220 GALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFG 299 (724)
Q Consensus 220 GaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 299 (724)
-....|++... +|..+.+ .--+.+ ..+++=+||+.+|++.|+..+.+. .+ .+++.++.+..-.+..++.+|++|
T Consensus 245 ~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~a-p~--~~l~~~i~l~iH~~l~l~~~kl~k 318 (378)
T PF05684_consen 245 TVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDA-PS--LFLFGFIILAIHLLLMLILGKLFK 318 (378)
T ss_pred HHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHh-HH--HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33445555432 3445444 333444 578888999999999999987653 22 233445555667888889999999
Q ss_pred CChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhh
Q 047435 300 TSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEAS 337 (724)
Q Consensus 300 ~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~ 337 (724)
.|..+.. ++..=|.-|.........+++ ..+..+-+
T Consensus 319 ~~l~~~~-vAS~AnIGGpaTA~a~A~a~~-~~Lv~pgv 354 (378)
T PF05684_consen 319 IDLFELL-VASNANIGGPATAPAVAAAKG-PSLVPPGV 354 (378)
T ss_pred CCHHHHH-HHhhcccCCcchHHHHHHhcC-CccHHHHH
Confidence 9987654 444455556555555554544 44444433
No 64
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.16 E-value=0.14 Score=54.65 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHH----HhchhHHHHHHHHHhhcCC-CCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhH
Q 047435 199 LMILPIAMGALTD----MLGVSFALGALIVGLIVPA-GPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSF 273 (724)
Q Consensus 199 il~~~l~~~~~~~----~~G~~~~lGaFlaGl~~~~-~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~ 273 (724)
.+++.....++++ ..++++.+=|.+.|+++.+ .....+...+-++.. ...++.+=.+..|.++++.++.+. .+
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G~ 83 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-GW 83 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-Cc
Confidence 3334444444444 3577788888999999998 544555555555543 568889999999999999988653 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhh---HHHHHHHHHHHHH
Q 047435 274 AALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEAS---YATMVLSHLAVNA 350 (724)
Q Consensus 274 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~---~~~lv~~~ll~t~ 350 (724)
..+...++...+.=.++.++..|++|++++.+..+|...+.=|.-.++...-..+ .+ ++|. .+.+.+.-.+..+
T Consensus 84 ~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~-a~--~~~~a~ava~V~lfg~vam~ 160 (305)
T PF03601_consen 84 KGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIK-AK--EEDVAYAVATVFLFGTVAMF 160 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccccc-CC--CCceeeeehHHHHHHHHHHH
Confidence 2233333333333334444555999999999999999888777766665554444 32 1221 2223333344455
Q ss_pred HHHHHHHHhcCccccc
Q 047435 351 IVTPIICIYHKPQTRC 366 (724)
Q Consensus 351 i~~~l~~~l~~p~~~~ 366 (724)
+-|.+.+++.-+...+
T Consensus 161 ~~P~l~~~l~l~~~~~ 176 (305)
T PF03601_consen 161 LYPLLGHALGLSPQQF 176 (305)
T ss_pred HHHHHHHHhCCCHHHH
Confidence 5677777766554443
No 65
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.13 E-value=0.18 Score=54.17 Aligned_cols=46 Identities=7% Similarity=0.234 Sum_probs=38.0
Q ss_pred HHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047435 39 YFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSD 84 (724)
Q Consensus 39 ~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~ 84 (724)
.++|..|-.+|++...+..||...+.+.-+.+..+++.+++.+++.
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 7889999999999988888888888777778888777777766654
No 66
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=96.10 E-value=1.8 Score=46.63 Aligned_cols=264 Identities=11% Similarity=0.079 Sum_probs=134.7
Q ss_pred hccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhh-h----ccccHHHHHHHHH-hccc
Q 047435 46 VKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSL-L----SMTYFSTVADAVS-ELKL 119 (724)
Q Consensus 46 le~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~-~----s~Ts~~vv~~iL~-el~l 119 (724)
+.||-+.+.|...|-+..-+.+.+..++++.+++.+++..+. ...+++ .+- + ..-+.|. +.+-+ -++.
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~---~~~~~i--~lPIm~GG~GaGavPL-S~~Y~~~~g~ 113 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD---HSLMYI--VMPIMAGGVGAGIVPL-SIIYSAITGR 113 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh---Hhhhee--eehhcCCCcccchhhH-HHHHHHHhCC
Confidence 478989999998888888888888888888888888765431 112222 110 0 0111221 11111 1233
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHH-H-Hhcc--CC-c-hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CCCC
Q 047435 120 LTSELGQLAMSSSMLAELLGWIALMA-E-AVFN--KS-L-GHKAESSLCLIGLLFFSFLVVRPA-VLLVVNRTPE-GKPV 191 (724)
Q Consensus 120 l~s~~G~lals~a~i~D~~~~ill~i-~-~~~~--~~-~-~~~l~~~~~~~~f~~~~~~v~r~~-~~~~~~~~~~-~~~~ 191 (724)
..+++=..++.+.++.++++++.-.+ - +... .- + +... |.- -....+..++ ..+.
T Consensus 114 ~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~-----------------~~~~~~~~~~~~~~~~~~~ 176 (347)
T TIGR00783 114 SSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELV-----------------RSEKREDAEKAKEITEIKI 176 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEe-----------------ecCCcchhhhccccccCCC
Confidence 33333344455555666666655554 2 2111 00 0 0000 000 0000000000 0011
Q ss_pred chhHHHHHHHHHH---HHHHHHHHh-chhHHHHHHHHHhhcCCCCChhhHHHHHHhh---hhhhhhhHHHHHHhccc-cc
Q 047435 192 KEGYVIGLMILPI---AMGALTDML-GVSFALGALIVGLIVPAGPPLGSALVEKCDF---VISNILLPFFYLRIGLL-TN 263 (724)
Q Consensus 192 ~e~~~~~il~~~l---~~~~~~~~~-G~~~~lGaFlaGl~~~~~~p~~~~l~ekl~~---~~~~~flPlFF~~~G~~-~d 263 (724)
+-..+..-+++++ ..+.+.+.+ ++|+..-..++|.++....=..+.+.++... +...-+.+..++.+|+. +|
T Consensus 177 ~~~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~ 256 (347)
T TIGR00783 177 DVKLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYID 256 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 1111222222221 222122222 5677777888888777654444555555433 33333444455556766 78
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH-HHHHHHhhhh-hhHHHHhhhhccccccCCC
Q 047435 264 VHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFG-ILFSFILNVK-GINEFMLLNRLRVNFKTID 334 (724)
Q Consensus 264 ~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~-~~lg~~m~~k-G~~~l~~~~~~~~~~~~i~ 334 (724)
+..+.+.-++ ..+++++...++=.+++++.+|+.|+=+-|+ +..|+.|+.+ |.=++++.+.+.. .+++.
T Consensus 257 l~~L~~a~t~-~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~R-M~Lmp 327 (347)
T TIGR00783 257 LDDLVAALSW-QFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNR-MNLIP 327 (347)
T ss_pred HHHHHHHhch-hHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhh-ccccc
Confidence 8776553223 3455666667778889999999999855554 5666677655 5567777776666 55554
No 67
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=95.91 E-value=1.1 Score=48.54 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhc-----hhHHHHHHHHHhhcCCCCChh--hHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHH
Q 047435 202 LPIAMGALTDMLG-----VSFALGALIVGLIVPAGPPLG--SALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFA 274 (724)
Q Consensus 202 ~~l~~~~~~~~~G-----~~~~lGaFlaGl~~~~~~p~~--~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~ 274 (724)
.+.+..++.++++ +....++++.|+++.+--+.. ..+.++.-+...+.-+-+|.+..=|.+.+..+.+. ...
T Consensus 230 ~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l-~lp 308 (404)
T COG0786 230 CLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL-ALP 308 (404)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 3345555666665 456789999999988752211 12333434444677888888888888888877653 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhh-hhhhHHHHhhhh
Q 047435 275 ALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILN-VKGINEFMLLNR 325 (724)
Q Consensus 275 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~-~kG~~~l~~~~~ 325 (724)
+++++.+-..+.-+.+.+...|..|-+...+...+.-+. .-|....++++.
T Consensus 309 l~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 309 LLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 444555555566677788888999988877765443333 335555555554
No 68
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.89 E-value=0.22 Score=58.06 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHH
Q 047435 199 LMILPIAMGALTDMLGVSFALGALIVGLIVPAGP-PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALE 277 (724)
Q Consensus 199 il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~-p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ 277 (724)
+++..++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++.+..|+++|+..+.... ....
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~--~~~~ 89 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVK--SIAI 89 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHh--hHHH
Confidence 4556667778888899999999999999986431 11111 1234444 4566667777889999998875421 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHH
Q 047435 278 TILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYA 339 (724)
Q Consensus 278 ~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~ 339 (724)
...+...+.=++.++.....+++++.+++.+|..++.-.. .+++....+ .|.++.+.-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e-~~~l~s~~G~ 148 (558)
T PRK10669 90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEE-RQLIDSQRGQ 148 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHh-cCcccCcchH
Confidence 1111222222333444556778999999999987776333 344445555 7776664433
No 69
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.81 E-value=0.25 Score=58.03 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-CChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHH
Q 047435 196 VIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAG-PPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFA 274 (724)
Q Consensus 196 ~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~-~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~ 274 (724)
..+.++...++..++..+|+++++|=.++|+++... ...-+. .+.++.+ ..+-+.++.+..|+++|+..+......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~- 86 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRS- 86 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence 344455556667788899999999999999998642 111111 1334444 466677777888999999887542111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhh
Q 047435 275 ALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNV 314 (724)
Q Consensus 275 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~ 314 (724)
++.+....++.-.+.......++|+++..++.+|..+..
T Consensus 87 -~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 87 -IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111111111111112222345568999999888876543
No 70
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.75 E-value=0.15 Score=59.33 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCh--hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHH
Q 047435 198 GLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPL--GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAA 275 (724)
Q Consensus 198 ~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~--~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~ 275 (724)
+++++..+++.+++.+|+..+++-.++|+++.....- ...-.+-.+. ...+.+++.....|+++|+..+... +..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~-i~~l~L~~iLF~~Gl~~~~~~l~~~--~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYL-VGNLALAVILFDGGLRTRWSSFRPA--LGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHH-HHHHHHHHHHHcCccCCCHHHHHHH--HHH
Confidence 3444555667778888999999999999988764211 0001122333 4678899999999999999988642 333
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHhhhhhhH
Q 047435 276 LETILVGAYVGK-LVGSLCTVLFFGTSLRFGILFSFILNVKGIN 318 (724)
Q Consensus 276 ~~~ii~~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~ 318 (724)
...+.....+.- .+.++...+++++++.+++.+|.++++-...
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 333333332222 2334455567899999999999988876544
No 71
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.66 E-value=4 Score=43.96 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHhchh--HHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccc-hh
Q 047435 196 VIGLMILPIAMGALTDMLGVS--FALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNF-KS 272 (724)
Q Consensus 196 ~~~il~~~l~~~~~~~~~G~~--~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~~ 272 (724)
+...+...+..+++.+.+++. ..+|+++.+.++.......-.+-+.+ ..+-.-+.-..+|.+++...+... +.
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 444555667788888888885 47888888777664311111111111 122233445688999998776542 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHH
Q 047435 273 FAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIV 352 (724)
Q Consensus 273 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~ 352 (724)
+...+...+..+..-.+.+++..+++++|+.+++. .+.|-|.-|+.+.....+ ...---..+.++=+..+ -.+.
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~-~d~~~V~~~q~~Rl~~v--~~~~ 306 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALG-ADVAFVAAHQVVRLLFV--LLLA 306 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcC-CChHHHHHHHHHHHHHH--HHHH
Confidence 34445556666667788889999999999998764 588999999887776655 32211112222212122 2446
Q ss_pred HHHHHHhcC
Q 047435 353 TPIICIYHK 361 (724)
Q Consensus 353 ~~l~~~l~~ 361 (724)
|++.+++.|
T Consensus 307 p~~~r~~~r 315 (318)
T PF05145_consen 307 PFIARWLRR 315 (318)
T ss_pred HHHHHHHHH
Confidence 777777754
No 72
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.60 E-value=0.11 Score=48.42 Aligned_cols=131 Identities=14% Similarity=0.150 Sum_probs=79.9
Q ss_pred ceEEEEeec-CCcchHHHHHHHHHHhcCCCeEEEEEEEeecccccc--------c-----hhhhhhhHHHHHHHHHhhcc
Q 047435 548 TYSLVVLFL-GGADDREALALVSRMSGHPGLSITVFRITVIEDEQS--------E-----YDCERHLDEIAINEFITNNI 613 (724)
Q Consensus 548 ~~~I~v~f~-GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~--------~-----~~~~~~~d~~~i~~~~~~~~ 613 (724)
..+|++++- |.+..+.|++.+...+...+..++++.+.+...... . ....+...++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999998 899999999999999999999998888764311000 0 00112223445555544332
Q ss_pred CCCceEEEEEEecCh----HHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccE
Q 047435 614 SNACVACRQVIAKNT----TEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSV 689 (724)
Q Consensus 614 ~~~~v~y~e~~v~~~----~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~sv 689 (724)
. ..+...+..+..| +++..... ..+.||+++|.++. +.|.+ --+|...+.++. .++++|
T Consensus 85 ~-~~~~~~~~~~~~g~~~~~~i~~~a~--~~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~----~~~~pV 147 (154)
T COG0589 85 A-AGVPVVETEVVEGSPSAEEILELAE--EEDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLR----HAPCPV 147 (154)
T ss_pred H-cCCCeeEEEEecCCCcHHHHHHHHH--HhCCCEEEECCCCC---------ccccc-eeeehhHHHHHh----cCCCCE
Confidence 1 1122112222222 33333333 24799999999732 23322 469999999997 577999
Q ss_pred EEEEec
Q 047435 690 LVIQCG 695 (724)
Q Consensus 690 Lvvqq~ 695 (724)
||++..
T Consensus 148 lvv~~~ 153 (154)
T COG0589 148 LVVRSE 153 (154)
T ss_pred EEEccC
Confidence 999753
No 73
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.49 Score=52.56 Aligned_cols=154 Identities=17% Similarity=0.226 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCC-CC---ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccch
Q 047435 196 VIGLMILPIAMGALTDMLGVSFALGALIVGLIVPA-GP---PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFK 271 (724)
Q Consensus 196 ~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~-~~---p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~ 271 (724)
+..+++.+...+.+.+.+|+++++|=.++|+++.. +. ...++..+-+.. +=.-++...+|+.+|+..+....
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lae----lGvi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAE----LGVVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHH----HhHHHHHHHHHHCcCHHHHHHhc
Confidence 45556666677799999999999999999999987 21 123333333334 33445566789999998886532
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHH
Q 047435 272 SFAALETILVGAYVGKLVGS--LCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVN 349 (724)
Q Consensus 272 ~~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t 349 (724)
... ........+..=++.+ +... +++.++..++.+|..+..-... +.+.+..| .|..+.+.-..++...++.=
T Consensus 87 ~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~~--i~~~iL~e-~~~~~~~~g~~~l~~~i~~D 161 (397)
T COG0475 87 RSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSSTA--IVLKILME-LGLLKTREGQLILGALVFDD 161 (397)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHH--HHHHHHHH-hccccchHHHHHHHHHHHHH
Confidence 221 1222222222221222 2223 5899999999999887654321 23333444 66666665555555554444
Q ss_pred HHHHHHHHH
Q 047435 350 AIVTPIICI 358 (724)
Q Consensus 350 ~i~~~l~~~ 358 (724)
+++-+++..
T Consensus 162 i~~i~lLai 170 (397)
T COG0475 162 IAAILLLAI 170 (397)
T ss_pred HHHHHHHHH
Confidence 444444433
No 74
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.91 E-value=0.3 Score=51.87 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=83.7
Q ss_pred HHHHHhchhHHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHH
Q 047435 208 ALTDMLGVSFALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGK 287 (724)
Q Consensus 208 ~~~~~~G~~~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K 287 (724)
...+..|+++..=|.+.|+++...++.......-++.- ...++.+=.+..|+++++.++.+- .+. .+.+.+.....-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHH
Confidence 34455666688888999999886655555555555554 677888889999999999988752 122 344455555666
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhc
Q 047435 288 LVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRL 326 (724)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~ 326 (724)
++.++...+++|+|++.+..+|...+-=|...++...-.
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pv 145 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPV 145 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCc
Confidence 777788888999999999999988877777766655443
No 75
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.90 E-value=1.4 Score=43.52 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccChHHHHHhhhHHHH--HHH-HHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhh-ccccHHHH
Q 047435 35 LSGVYFIFIISVKMDTVKILRAAKHTWF--ITI-ACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLL-SMTYFSTV 110 (724)
Q Consensus 35 iGl~~~lF~~Gle~d~~~l~~~~k~~~~--i~~-~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~-s~Ts~~vv 110 (724)
+.+.+.||..|+++|++++++..|+... .++ .++++.-++++++++.+.... ....+ |..+ +.+.-+..
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~-----~~~~~--Gl~l~~~~P~~~~ 74 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS-----PALAL--GLLLVAACPGGPA 74 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT-------HHHHH--HHHHHHHS-B-TH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHH--HHHHHhcCCcHHH
Confidence 4578899999999999999987765433 333 334443344555552232211 11222 2221 22222223
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 047435 111 ADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA 145 (724)
Q Consensus 111 ~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i 145 (724)
+.+...+. +.+. .++++...++.+++.++.-+
T Consensus 75 s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~ 106 (187)
T PF01758_consen 75 SNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPL 106 (187)
T ss_dssp HHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHH
Confidence 33333322 3333 35666677777777766655
No 76
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.80 E-value=0.92 Score=48.94 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHH-----hchhHHHHHHHHHhhcCCCC--ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchh
Q 047435 200 MILPIAMGALTDM-----LGVSFALGALIVGLIVPAGP--PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKS 272 (724)
Q Consensus 200 l~~~l~~~~~~~~-----~G~~~~lGaFlaGl~~~~~~--p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~ 272 (724)
+.+.+.+.++++. .|+++.+=|.+.|+++.+.. +..+....-++ +....++-+=.+..|.++++.++... .
T Consensus 11 ~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~-G 88 (335)
T TIGR00698 11 ALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADV-G 88 (335)
T ss_pred HHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHh-h
Confidence 3344444445443 46777778889999988742 12222222223 33566777778899999999988642 2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhh---HHHHHHHHHHH
Q 047435 273 FAALETILVGAYVGKLV-GSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEAS---YATMVLSHLAV 348 (724)
Q Consensus 273 ~~~~~~ii~~~~~~K~~-~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~---~~~lv~~~ll~ 348 (724)
+. .+.+.+.....-+. +.++..|.+|++++.+..+|...+-=|.-.++...-..+ .+ ++|. -+.+++.-.+.
T Consensus 89 ~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~-A~--~~~~a~ava~V~lfgt~a 164 (335)
T TIGR00698 89 PN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK-AE--KEKVSVAIAIVVIFGTTG 164 (335)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccC-CC--ccceeeeehHHHHHHHHH
Confidence 22 22222333333344 455555899999999999998887667666665544433 21 1221 12233333344
Q ss_pred HHHHHHHHHHh
Q 047435 349 NAIVTPIICIY 359 (724)
Q Consensus 349 t~i~~~l~~~l 359 (724)
.++-|++.+++
T Consensus 165 m~l~P~l~~~l 175 (335)
T TIGR00698 165 IFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHH
Confidence 55566666554
No 77
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.64 E-value=0.23 Score=58.24 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=84.5
Q ss_pred CCceeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhh
Q 047435 383 SSELRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFR 462 (724)
Q Consensus 383 ~~elrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 462 (724)
....|||||++.......+++-+..++..-+ ...+++|+.....+..+ ....+-++...+.++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~--a~~~av~v~~~~~~~~~---------------~~~~~~l~~~~~Lae 308 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLH--AKWTAVYVETPELHRLS---------------EKEARRLHENLRLAE 308 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhC--CCeEEEEEecccccccc---------------HHHHHHHHHHHHHHH
Confidence 4457999999999999999999888887643 46888888553222111 011223333334444
Q ss_pred cCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcccchhHHHHHhhcCCCceEEEecC
Q 047435 463 SSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTTNLQNFDMNIQAHAPCTVGLLVDK 534 (724)
Q Consensus 463 ~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~~ApCsVgilVdr 534 (724)
+..+. ..+-.+ .++.+.|.+.|++.+++-||+|-+.+++...-..+++.+++++++|-==..+|..
T Consensus 309 ~lGae----~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~ 374 (890)
T COG2205 309 ELGAE----IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVAL 374 (890)
T ss_pred HhCCe----EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeC
Confidence 43332 222234 8999999999999999999999876653110035899999999986533334443
No 78
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.58 E-value=0.6 Score=55.45 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=50.9
Q ss_pred hhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHhhhhhhH
Q 047435 246 ISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLF--FGTSLRFGILFSFILNVKGIN 318 (724)
Q Consensus 246 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~~~~~~lg~~m~~kG~~ 318 (724)
++.+.+++-.+..|++++...+.. .|..+..+++.+...-++++.+.+++ .|++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 356788888888999999998865 35544444444444455555555554 499999999999999987754
No 79
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=94.03 E-value=12 Score=41.28 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHhhcCCCC------ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHH
Q 047435 215 VSFALGALIVGLIVPAGP------PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKL 288 (724)
Q Consensus 215 ~~~~lGaFlaGl~~~~~~------p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~ 288 (724)
+....+|++.|+++.+.. ...++..+++ .++.+=+|.+..=+.+++..+.+. .....+++++...+.=+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~~-a~Plliil~~q~i~~~~ 321 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLADY-ALPLLIILAVQTILMVL 321 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345789999999987632 1223333343 455666666666677888888763 22223333444444455
Q ss_pred HHHHHHHHHhCCChhHHHHH
Q 047435 289 VGSLCTVLFFGTSLRFGILF 308 (724)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~l 308 (724)
...++..|.+|-++ |+..+
T Consensus 322 f~~fv~fr~~gkdy-daavm 340 (368)
T PF03616_consen 322 FAYFVTFRVMGKDY-DAAVM 340 (368)
T ss_pred HHHHHhhhhhCCCh-hHHHH
Confidence 56677788888886 55444
No 80
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.78 E-value=0.66 Score=53.58 Aligned_cols=118 Identities=14% Similarity=0.320 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhh-HHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHH
Q 047435 199 LMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLGS-ALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALE 277 (724)
Q Consensus 199 il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~~-~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~ 277 (724)
.++.+.+...+++.+++.+.++-.++|+++...+.... .+.. + ....+++|......|+++|+..+... +..+.
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~~--~~~i~ 80 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELREN--FRPIA 80 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHH
Confidence 33444455566777777777777777777653211100 0111 1 12357889999999999999988653 33333
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHH
Q 047435 278 TILVGAY-VGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFM 321 (724)
Q Consensus 278 ~ii~~~~-~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~ 321 (724)
.+.+... +.-.+.++...+..++|+..++.+|.++++...+...
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~ 125 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVL 125 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHH
Confidence 3333222 2233333333346799999999999999988766543
No 81
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.69 E-value=1.3 Score=53.99 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=29.6
Q ss_pred CcceEEEEeecCCcchHHHHHHHHHH--hcCCCeEEEEEEEee
Q 047435 546 HFTYSLVVLFLGGADDREALALVSRM--SGHPGLSITVFRITV 586 (724)
Q Consensus 546 ~~~~~I~v~f~GG~ddreAL~~a~rm--a~~~~~~ltv~r~~~ 586 (724)
+...||++++-+-.|-...+.++... .+++...+.++|+++
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLve 498 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVE 498 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEe
Confidence 33569999988766777777776554 344557888899875
No 82
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=93.67 E-value=12 Score=40.38 Aligned_cols=102 Identities=8% Similarity=0.073 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhhHHH--HHH-HHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhc-cccHHH
Q 047435 34 TLSGVYFIFIISVKMDTVKILRAAKHTW--FIT-IACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLS-MTYFST 109 (724)
Q Consensus 34 ~iGl~~~lF~~Gle~d~~~l~~~~k~~~--~i~-~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s-~Ts~~v 109 (724)
.+++.++||-.|++++++++++..|+.. .++ +.++++-=+++++++..+.... ..+.+ |..+- ...-.+
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~-----p~l~~--GliLv~~~Pgg~ 118 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL-----FEYIA--GLILLGLARCIA 118 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----HHHHH--HHHHHHhcchHH
Confidence 3466689999999999999887665432 222 2333332234666665542221 12333 43332 122222
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 047435 110 VADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA 145 (724)
Q Consensus 110 v~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i 145 (724)
.+.+.+.+. +.+. .++++.+.++-+++.++.-.
T Consensus 119 ~S~v~T~lA--kGnv-alsv~lt~~stLl~~~~~P~ 151 (328)
T TIGR00832 119 MVFVWNQLA--KGDP-EYTLVLVAVNSLFQVFLYAP 151 (328)
T ss_pred HHHHHHHHc--CCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 333333333 3333 25555566777666655533
No 83
>TIGR00930 2a30 K-Cl cotransporter.
Probab=93.47 E-value=26 Score=43.54 Aligned_cols=104 Identities=6% Similarity=-0.005 Sum_probs=68.2
Q ss_pred CCCceeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhh
Q 047435 382 ISSELRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQF 461 (724)
Q Consensus 382 ~~~elrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 461 (724)
.+-.-++|+.+.+|++-+.+++++..+.+.+. -..+.|+++-+.+.. . .+.++..+..+.+-
T Consensus 572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~g---l~i~~~v~~~~~~~~-----~----------~~~~~~~~~~~~~~ 633 (953)
T TIGR00930 572 KNWRPQCLVLTGPPVCRPALLDFASQFTKGKG---LMICGSVIQGPRLEC-----V----------KEAQAAEAKIQTWL 633 (953)
T ss_pred cccCCeEEEEeCCCcCcHHHHHHHHHhccCCc---EEEEEEEecCchhhh-----H----------HHHHHHHHHHHHHH
Confidence 34456899999999999999999999985432 345568876431110 0 01111222222222
Q ss_pred hcCCCCeEEEEeEEEcCCCChHHHHHHHHHhc-----CCCEEEeccccCCC
Q 047435 462 RSSDVPFTILPYKMIAPYDTMHESICELVKEK-----FIPLVVLPFNKKRQ 507 (724)
Q Consensus 462 ~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~-----~~~lIIlp~h~~~~ 507 (724)
+. -.++.|..+....++.+++..+.+-- +.+.+++||...|+
T Consensus 634 ~~----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~ 680 (953)
T TIGR00930 634 EK----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWR 680 (953)
T ss_pred HH----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchh
Confidence 21 12455555555689999999999877 57999999998886
No 84
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=93.46 E-value=0.29 Score=51.54 Aligned_cols=113 Identities=14% Similarity=0.250 Sum_probs=73.9
Q ss_pred hhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhh
Q 047435 246 ISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNR 325 (724)
Q Consensus 246 ~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~ 325 (724)
-++++=|+-|..+|..+|++.+... .+. .++-..+=++ ...+++.+...|++.+|+-.+|.+=.+-|-..+.+.+.
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 3688889999999999999887543 121 2222223222 34556667778999999999999988888888877665
Q ss_pred ccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 047435 326 LRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQTR 365 (724)
Q Consensus 326 ~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~~ 365 (724)
.-. +++.+-.-.+-..|+++ =++-||+.|.+--++.|
T Consensus 143 LAp--~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 143 LAP--HLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhH--HHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHH
Confidence 322 33333333333334444 56789999998754433
No 85
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.25 E-value=2.1 Score=40.90 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhchh--HHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccc-hhHHHH
Q 047435 200 MILPIAMGALTDMLGVS--FALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNF-KSFAAL 276 (724)
Q Consensus 200 l~~~l~~~~~~~~~G~~--~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~ 276 (724)
+......+++.+.+|+. .++|+++++.++.-.....-.+-+. ...+-.-+.-..+|.+++...+.+. +.+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~----~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPW----LLALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHH----HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455666777888886 6889998888766432111111111 1222333445788999998777652 234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhc
Q 047435 277 ETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRL 326 (724)
Q Consensus 277 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~ 326 (724)
....+..++.-.+.+++..++.++|+.+++. ...|-|.-++......
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L---a~~PGGl~~m~~~A~~ 126 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAFL---ATSPGGASEMAALAAE 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCchHHHHHHHHHH
Confidence 5556666677788889999999999998863 4778888887766553
No 86
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=93.04 E-value=1.1 Score=47.86 Aligned_cols=136 Identities=13% Similarity=0.091 Sum_probs=83.0
Q ss_pred hhhhhhhhHHHHHHhcccccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHh
Q 047435 244 FVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETI-LVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFML 322 (724)
Q Consensus 244 ~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~i-i~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~ 322 (724)
.+.++++=|+-|..+|..+|++.+... .+. .++ -..+=++ ...+++.+...|++.+|+-.+|.+=.+-|-..+.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllan-P~~--~ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILAR-PWA--SITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhC-hHH--HHHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 445788889999999999999887543 111 111 1222222 23445566778999999999999988989888877
Q ss_pred hhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhccccccCCCCCceeEEEEe
Q 047435 323 LNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQTRCKVTEDKQMRTLQTTPISSELRIFCGV 392 (724)
Q Consensus 323 ~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~~~~~~~~~~~r~i~~~~~~~elrILvcv 392 (724)
.+..-. +++.+-.-.+-..|+++ =++-||++|.+--++.|... -+|+.|. -++..||+.|+
T Consensus 177 s~kLAp--~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER~I~-M~~~~r~-----VSk~eKilFpi 237 (399)
T TIGR03136 177 SLILAK--DLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYRGLE-VEMEFPD-----VSQRAKFVFTI 237 (399)
T ss_pred HHhhhh--HhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHHccc-CccCCCC-----CCccchhHHHH
Confidence 665332 34433333333344444 56789999998754433322 0123332 33455776554
No 87
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=92.86 E-value=1.6 Score=43.31 Aligned_cols=106 Identities=18% Similarity=0.323 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhhccCh-----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhcc
Q 047435 30 NTLSTLSGVYFIFIISVKMDT-----VKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLSM 104 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~-----~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s~ 104 (724)
+...+..+..++|.+|+++-- +.+++.+++++.+.+.+.+-+++.+.+++.+++... .+++.+ +.-+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~----~~~lav--~sG~G- 95 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSL----KESLAV--ASGFG- 95 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCH----HHHHHH--HccCc-
Confidence 678889999999999999843 346777799999999998888888888888774432 444444 33321
Q ss_pred ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 047435 105 TYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA 145 (724)
Q Consensus 105 Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i 145 (724)
=+.....++.|++ +.++|.++.=+=++.|++++++.-+
T Consensus 96 -wYSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~ 133 (191)
T PF03956_consen 96 -WYSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPL 133 (191)
T ss_pred -HHHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233344433 5678887776666666666655443
No 88
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=92.60 E-value=17 Score=39.18 Aligned_cols=155 Identities=17% Similarity=0.145 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHhchh--HHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccch-h
Q 047435 196 VIGLMILPIAMGALTDMLGVS--FALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFK-S 272 (724)
Q Consensus 196 ~~~il~~~l~~~~~~~~~G~~--~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~-~ 272 (724)
+.+.+...++.+.+...+++. ..+|+++.|..+.-+....-.+- .-...+-.-+.-..+|.++|-..+.... .
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP----~wl~~va~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLP----AWLLAVAQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCC----HHHHHHHHHHHHHHHcccccHHHHHHhHhh
Confidence 455555666777777777775 47899999998886631111111 1111222334456789999976664322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHH-HHHHHHHHHH
Q 047435 273 FAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATM-VLSHLAVNAI 351 (724)
Q Consensus 273 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~l-v~~~ll~t~i 351 (724)
....++.++..++.-...+++..++.+.|+.++.. ..+|.|.-+++....+.+ . |...-..+ ++=.++...+
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~-a---d~a~V~a~q~lRll~il~i 338 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG-A---DPAFVMALQVLRLLFILLL 338 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC-C---ChHHHHHHHHHHHHHHHHH
Confidence 22344555566666777788888889999988763 578888888776665544 2 22211111 1112233344
Q ss_pred HHHHHHHhcC
Q 047435 352 VTPIICIYHK 361 (724)
Q Consensus 352 ~~~l~~~l~~ 361 (724)
.|++.|++-+
T Consensus 339 ~p~l~r~l~~ 348 (352)
T COG3180 339 GPALARFLSK 348 (352)
T ss_pred HHHHHHHHHH
Confidence 5777777654
No 89
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.27 E-value=7.4 Score=39.22 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=81.3
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhh
Q 047435 235 GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNV 314 (724)
Q Consensus 235 ~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~ 314 (724)
++.+..-+++-+-.+-.|+|= ++..+.. .|..+..-++++.+.-++.+++.++++|.+..- -..+.+
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYk-------q~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~----~~Sl~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYK-------QRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPEL----ILSLLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----HHHhcc
Confidence 455555666666666666662 2344443 466666666777777888899999999987663 345889
Q ss_pred hhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 047435 315 KGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIY 359 (724)
Q Consensus 315 kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l 359 (724)
|....=+...++.+ .|.+.+-+-..+++.-++.+.+.+++.+++
T Consensus 128 kSvTTpiAm~vs~~-iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSES-IGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888888888 898888777777777788788888888886
No 90
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=91.93 E-value=21 Score=38.62 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLS-RILS 83 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~-~~l~ 83 (724)
+.+-++|++ +.|.++++..+.+.+.+.+.+....+...+.++..++ ..++
T Consensus 65 k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~ 115 (335)
T TIGR00698 65 PFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLK 115 (335)
T ss_pred HHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466677777 5799999999999999998777776666666666665 3554
No 91
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=91.47 E-value=27 Score=38.85 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhhcCCCCChh--hHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHH-HHH
Q 047435 215 VSFALGALIVGLIVPAGPPLG--SALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKL-VGS 291 (724)
Q Consensus 215 ~~~~lGaFlaGl~~~~~~p~~--~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~-~~~ 291 (724)
+....+|++.|+++.+..+.. .++.++.-+...++.+-+|.+..=|.+++..+.+. +....++.+..++.-. ...
T Consensus 245 lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~--a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 245 LPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL--AGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 566889999999988742211 12323333444677778888888888999888763 4434444444433333 455
Q ss_pred HHHHHHhCCChhHHHHH
Q 047435 292 LCTVLFFGTSLRFGILF 308 (724)
Q Consensus 292 ~l~~~~~~~~~~~~~~l 308 (724)
++..|..|-+ .|+-.+
T Consensus 323 fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHhHHhccch-HHHHHH
Confidence 6677777766 666553
No 92
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=90.80 E-value=0.72 Score=38.95 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHhcCCCEEEeccccCCC-CCcccch-hHHHHHhhcCCCce
Q 047435 481 TMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQ-NFDMNIQAHAPCTV 528 (724)
Q Consensus 481 ~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~-~~~~~Vl~~ApCsV 528 (724)
.+.+.+.+.|++.+++.|+.|.|.... ... ..+ +....+.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~-~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRR-LGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhc-cCchhhhhhcccccCCce
Confidence 788899999999999999999998764 111 344 67788899999985
No 93
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=89.86 E-value=15 Score=39.18 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLS-RILSD 84 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~-~~l~~ 84 (724)
+.+-++|++ +.|.++++..+.+.+.+...+....+...+.++..++ ..++.
T Consensus 59 k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l 110 (305)
T PF03601_consen 59 KKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGL 110 (305)
T ss_pred HHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466677777 5799999999999999988888888888887777776 66654
No 94
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=89.25 E-value=2.9 Score=45.98 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=64.8
Q ss_pred hhhhhHHHHHHhcccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH-Hh-hhhhhHHHHhh
Q 047435 247 SNILLPFFYLRIGLLTNVHSIKNF-KSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSF-IL-NVKGINEFMLL 323 (724)
Q Consensus 247 ~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~-~m-~~kG~~~l~~~ 323 (724)
.++|+-.||+.+|+..++..+... +.......+.........+.....+..++.++.-++..|. .+ .-.|.. .+..
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTA-aa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTA-AAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHH-HHHH
Confidence 456777899999999998877542 1122222233333445666666667788888776665542 12 222322 2233
Q ss_pred hhccccc-cCCChhhHHHH--HHHHHHHHHHHHHHHHHhcCcc
Q 047435 324 NRLRVNF-KTIDEASYATM--VLSHLAVNAIVTPIICIYHKPQ 363 (724)
Q Consensus 324 ~~~~~~~-~~i~~~~~~~l--v~~~ll~t~i~~~l~~~l~~p~ 363 (724)
...-+ . |+-+.....+. .+..+.-.++..|+.+++.|+.
T Consensus 145 ~~fe~-~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 145 PTFEE-LYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred HHHHH-hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333 4 55544433332 2334445677899999987643
No 95
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=88.67 E-value=19 Score=36.70 Aligned_cols=111 Identities=8% Similarity=0.048 Sum_probs=74.9
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhh
Q 047435 235 GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNV 314 (724)
Q Consensus 235 ~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~ 314 (724)
++.+..-+.+-+-.+-+|+|= +...+.. .|..+..-+++..+.-++.++..++++|.+.. +-..|.+
T Consensus 64 ~~~l~~lLgPAtVALAvPLY~-------q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~p 130 (232)
T PRK04288 64 GDIISFFLEPATIAFAIPLYK-------KRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLP 130 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhh
Confidence 344444555555566666652 2333433 35555555666666778888888999998775 3346889
Q ss_pred hhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 047435 315 KGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIY 359 (724)
Q Consensus 315 kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l 359 (724)
|....=+...++.+ .|-+..-+-..++++-++-..+.+++++++
T Consensus 131 KSVTtPIAm~is~~-iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 131 QAATTAIALPVSAG-IGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HhhhHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988888888888 887766666666666677677777777775
No 96
>PRK10490 sensor protein KdpD; Provisional
Probab=88.35 E-value=3.2 Score=51.25 Aligned_cols=123 Identities=10% Similarity=0.135 Sum_probs=78.2
Q ss_pred cceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEec
Q 047435 547 FTYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIAK 626 (724)
Q Consensus 547 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v~ 626 (724)
...||+|..-|+|..+..++.++|||+.-++.++++++.....+....+.++.+. +.++ +.++. +..+ .. +
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~-~~~~-lA~~l--Ga~~--~~--~- 319 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAIL-SALR-LAQEL--GAET--AT--L- 319 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHH-HHHH-HHHHc--CCEE--EE--E-
Confidence 3578999999999999999999999999999999999864321111111222222 2222 33332 2222 22 2
Q ss_pred ChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 627 NTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 627 ~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
.+.|+.+.|-+.+ .+-+-+|+|++++. .| . --|.+.|.|... ..+-.|.||-
T Consensus 320 ~~~dva~~i~~~A~~~~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~---~~~idi~iv~ 373 (895)
T PRK10490 320 SDPAEEKAVLRYAREHNLGKIIIGRRASR---------RW--W-RRESFADRLARL---GPDLDLVIVA 373 (895)
T ss_pred eCCCHHHHHHHHHHHhCCCEEEECCCCCC---------CC--c-cCCCHHHHHHHh---CCCCCEEEEe
Confidence 2334555555554 45788999999763 25 1 246888988865 4567888884
No 97
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=88.16 E-value=0.59 Score=49.79 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=77.3
Q ss_pred hhhhhhhHHHHHHhccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHhhhhhh
Q 047435 245 VISNILLPFFYLRIGLLTNVHSIKN-FKSFAALETILVGAYVGKLVGSLCTVLF------FGTSLRFGILFSFILNVKGI 317 (724)
Q Consensus 245 ~~~~~flPlFF~~~G~~~d~~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~kG~ 317 (724)
+.++++=|+-|..+|..+|++.+.. ++.+ ++-..+=++-+. +++.+.. .|++.+|+-.+|.+=.+-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~----llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTL----LLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHH----HHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 3467888999999999999987754 3222 222222222222 2222222 38999999999998888888
Q ss_pred HHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhccccccCCCCCceeEEEEe
Q 047435 318 NEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQTRCKVTEDKQMRTLQTTPISSELRIFCGV 392 (724)
Q Consensus 318 ~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~~~~~~~~~~~r~i~~~~~~~elrILvcv 392 (724)
.++.+.+..-. +++.+-.-.+-..|+++ =++-||+.|.+--+++|...- ++.| +.+...||+.|+
T Consensus 206 TsIfvsskLAP--~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER~I~M--~~lr-----~VSk~eKIlFPi 270 (433)
T PRK15475 206 TAIYLSGKLAP--ELLGAIAVAAYSYMALV-PLIQPPIMKALTTETERKIRM--VQLR-----TVSKREKILFPV 270 (433)
T ss_pred hHHHhHhhhhh--HhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHhCccC--CCCC-----CCCccchhHHHH
Confidence 88877665322 23333333333334444 567899999886433332210 2222 223456777665
No 98
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=88.07 E-value=10 Score=42.64 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhcC-CC-CChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHH
Q 047435 198 GLMILPIAMGALTDMLGVSFALGALIVGLIVP-AG-PPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAA 275 (724)
Q Consensus 198 ~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~-~~-~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~ 275 (724)
+++.+...++.+++.+....+.-+.+.|+... .. ++......-.-|.+ ..+++|+-....|+++|...+... +..
T Consensus 13 lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l~~~--~~~ 89 (429)
T COG0025 13 LILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLRELRRV--WRS 89 (429)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHHHHh--HHH
Confidence 33344445555555555554444444444433 11 11111111111222 267778888889999999988753 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHhhhhhhHHHHhh
Q 047435 276 LETILVGAYVGKLVGSLCTVLFF--GTSLRFGILFSFILNVKGINEFMLL 323 (724)
Q Consensus 276 ~~~ii~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~m~~kG~~~l~~~ 323 (724)
+..+.....+...++.....++. ++|+..++.+|.++++-.-+.+.-.
T Consensus 90 I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i 139 (429)
T COG0025 90 ILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPI 139 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHH
Confidence 44555555555555555555655 8999999999999988776665433
No 99
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=87.91 E-value=0.63 Score=49.62 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=68.3
Q ss_pred hhhhhhhHHHHHHhccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHhhhhhh
Q 047435 245 VISNILLPFFYLRIGLLTNVHSIKN-FKSFAALETILVGAYVGKLVGSLCTVLF------FGTSLRFGILFSFILNVKGI 317 (724)
Q Consensus 245 ~~~~~flPlFF~~~G~~~d~~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~kG~ 317 (724)
+.++++=|+-|..+|..+|++.+.. ++.+ ++-..+=++-++ +++.+.. .|++.+|+-.+|.+=.+-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~----llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTL----LLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHH----HHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 3467888999999999999987754 3222 222222222222 2222222 38999999999998888888
Q ss_pred HHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 047435 318 NEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQ 363 (724)
Q Consensus 318 ~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~ 363 (724)
.++.+.+..-. +++.+-.-.+-..|+++ =++-||+.|.+--++
T Consensus 206 TsIfvsskLAP--~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkk 248 (433)
T PRK15476 206 TAIYLSGKLAP--ELLGAIAVAAYSYMALV-PLIQPPIMKALTTEK 248 (433)
T ss_pred hHHHhHhhhhh--HhHHHHHHHHHHHHHHH-hcccchHHHhccCHH
Confidence 88877665322 23333333333334444 567899999886433
No 100
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=87.91 E-value=0.63 Score=49.62 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=68.2
Q ss_pred hhhhhhhHHHHHHhccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHhhhhhh
Q 047435 245 VISNILLPFFYLRIGLLTNVHSIKN-FKSFAALETILVGAYVGKLVGSLCTVLF------FGTSLRFGILFSFILNVKGI 317 (724)
Q Consensus 245 ~~~~~flPlFF~~~G~~~d~~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~kG~ 317 (724)
+.++++=|+-|..+|..+|++.+.. ++.+ ++-..+=++-++ +++.+.. .|++.+|+-.+|.+=.+-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~----llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTL----LLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHH----HHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 3467888899999999999987754 3222 222222222222 2222222 38999999999998888888
Q ss_pred HHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 047435 318 NEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQ 363 (724)
Q Consensus 318 ~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~ 363 (724)
.++.+.+..-. +++.+-.-.+-..|+++ =++-||+.|.+--++
T Consensus 206 TsIfvsskLAP--~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkk 248 (433)
T PRK15477 206 TAIYLSGKLAP--ELLGAIAVAAYSYMALV-PLIQPPIMKALTTEK 248 (433)
T ss_pred hHHHhHhhhhh--HhHHHHHHHHHHHHHHH-hcccchHHHhccCHH
Confidence 88877665322 23333333333334444 567899999886433
No 101
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=85.95 E-value=9.1 Score=37.13 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh-
Q 047435 25 EMMVINTLSTLSGVYFIFIISVKMDTVK---ILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS- 100 (724)
Q Consensus 25 ~~~~l~~l~~iGl~~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~- 100 (724)
.....+.+.++|+.+|++.+|++--++. +++.+.+...+++.-.++|.++++..++++.+. ...... |.
T Consensus 48 ~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l-----~~~~~~--G~~ 120 (169)
T PF06826_consen 48 PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKL-----NPGIAA--GIL 120 (169)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHH--HHH
Confidence 4566778999999999999999987765 566667777778877788888888887743322 122222 33
Q ss_pred hhccccHHHHHHHHHh
Q 047435 101 LLSMTYFSTVADAVSE 116 (724)
Q Consensus 101 ~~s~Ts~~vv~~iL~e 116 (724)
+=+.|++|.+....+.
T Consensus 121 aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 121 AGALTSTPALAAAQEA 136 (169)
T ss_pred HccccCcHHHHHHHHh
Confidence 3467888887776555
No 102
>COG3329 Predicted permease [General function prediction only]
Probab=85.33 E-value=15 Score=38.55 Aligned_cols=139 Identities=10% Similarity=-0.002 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhhcCCCC---ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHH
Q 047435 215 VSFALGALIVGLIVPAGP---PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGS 291 (724)
Q Consensus 215 ~~~~lGaFlaGl~~~~~~---p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~ 291 (724)
+++.+.-|+.|++.+-.. .+.+.+.+-+. -.++--.-..-|+.+.-+.+.. ....+..-+.+.++.-+++.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHH
Confidence 367778888888766431 11222222111 1111111122343443333332 23344455556666677888
Q ss_pred HHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHH-HHHHHHHHHHHHHHHHHHhc
Q 047435 292 LCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYAT-MVLSHLAVNAIVTPIICIYH 360 (724)
Q Consensus 292 ~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~-lv~~~ll~t~i~~~l~~~l~ 360 (724)
++..++.|++..|+...+..-..-..+.++.+..-++ .--+..+-|.. +...+=.-.+++..++..+|
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Le-e~giayeaym~A~lalMeiPallval~l~~~y 158 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLE-ESGIAYEAYMPAMLALMEIPALLVALVLANIY 158 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHH-HcCccHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 8888888999999999999888888888888877777 43444444433 32222222344444444444
No 103
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=85.28 E-value=58 Score=34.99 Aligned_cols=150 Identities=11% Similarity=0.024 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhh
Q 047435 26 MMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFIT---IACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLL 102 (724)
Q Consensus 26 ~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~---~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~ 102 (724)
...++.--.+|+...|+=.=+++|.+.+++..|+.-.+. ...+++--++.+..++++..+.+ .... |.++
T Consensus 46 ~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~la~~fl~~~p-----ey~~--GlIL 118 (342)
T COG0798 46 FGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALAWFFLPDEP-----EYRA--GLIL 118 (342)
T ss_pred eCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHH--HHHH
Confidence 334455567888888888889999999988776532222 22233322334445555543321 1122 2222
Q ss_pred ccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H--HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 103 SMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E--AVFNKSLGHKAESSLCLIGLLFFSFLVVRPAVL 179 (724)
Q Consensus 103 s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~--~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~~ 179 (724)
-.- -|.++-++.=-++.+.+.. .++..-.+||++.+++.+. . +.+..+...+++.++..+.+.+..-++...+.+
T Consensus 119 lgl-ApC~aMVivw~~La~Gd~~-~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR 196 (342)
T COG0798 119 LGL-APCIAMVIVWSGLAKGDRE-LTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTR 196 (342)
T ss_pred HHh-hhhHHHHHHHHhhccCcHh-hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1223333333345555553 3445556999999988866 3 222111123455555555444444444444445
Q ss_pred HHHHh
Q 047435 180 LVVNR 184 (724)
Q Consensus 180 ~~~~~ 184 (724)
++..|
T Consensus 197 ~i~~k 201 (342)
T COG0798 197 YILIK 201 (342)
T ss_pred HHHHH
Confidence 55444
No 104
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.91 E-value=3.2 Score=43.39 Aligned_cols=131 Identities=21% Similarity=0.318 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC-h--hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchh
Q 047435 196 VIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPP-L--GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKS 272 (724)
Q Consensus 196 ~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p-~--~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~ 272 (724)
...-+.++|..+.+++.+.++|..|-.++|.+....-| + .+.+...+-.++ .-+....+|+++.+.++..-+.
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 34456677889999999999999999999999874322 2 245555555553 2344567899999887765434
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCCh
Q 047435 273 FAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDE 335 (724)
Q Consensus 273 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~ 335 (724)
|.. ...+.-..+.- .-.+..++..|+++...+..|+.++.-..+ ++..++++++.+|.
T Consensus 87 iAi-pgAl~qia~at-~lg~gL~~~lgws~~~glvfGlaLS~aSTV---vllraLqEr~lidt 144 (408)
T COG4651 87 IAI-PGALAQIALAT-LLGMGLSSLLGWSFGTGIVFGLALSVASTV---VLLRALEERQLIDT 144 (408)
T ss_pred Hhc-chHHHHHHHHH-HHHhHHHHHcCCCcccceeeeehhhhHHHH---HHHHHHHHhccccc
Confidence 431 11111111111 122344567789999999999888775544 34445554555554
No 105
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=83.54 E-value=73 Score=34.73 Aligned_cols=282 Identities=11% Similarity=0.086 Sum_probs=140.6
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHhh------ccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc--ch
Q 047435 20 IFPRREMMVINTLSTLSGVYFIFIISV------KMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGV--ER 91 (724)
Q Consensus 20 ~f~~~~~~~l~~l~~iGl~~~lF~~Gl------e~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~--~~ 91 (724)
++|.+..+....+.+=+=.+.+|.+++ -||-+.+-|..+|-+...+.+++.-.+.|.+++..++..+.+. ..
T Consensus 94 llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m~~ 173 (438)
T COG3493 94 LLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMMYV 173 (438)
T ss_pred cCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeeeeE
Confidence 455555555555544444556677664 6777777777777777777777777777788887777654210 00
Q ss_pred hHHHHHhhhhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH-H-Hhcc------CCc--h-------
Q 047435 92 GLFRLYFTSLLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA-E-AVFN------KSL--G------- 154 (724)
Q Consensus 92 ~~l~l~~~~~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i-~-~~~~------~~~--~------- 154 (724)
....+-.|.--..+....++.-+ .+-...+.=..++.+..+..+++++.-++ - +... +.. .
T Consensus 174 vlPIM~GG~GaGavPLS~iYs~i--tg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~ 251 (438)
T COG3493 174 VLPIMGGGMGAGAVPLSEIYSSI--TGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEAT 251 (438)
T ss_pred EeeeccCCCCCCcccHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchh
Confidence 00001001111122222233322 34344566667788888999999888776 3 3211 000 0
Q ss_pred --h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 047435 155 --H-------KAESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVG 225 (724)
Q Consensus 155 --~-------~l~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaG 225 (724)
. .+..+.... .....++....++..++. .|. .+.+.++ .+.+-.+. +
T Consensus 252 ~ee~~~~~k~d~~~~g~G~-llA~~lf~~g~il~kf~~-~P~------~va~MIi-----l~a~lk~~-----------n 307 (438)
T COG3493 252 EEELEKEGKLDLKLMGAGM-LLACTLFMAGGILGKFIG-LPG------PVAFMII-----LVAILKAA-----------N 307 (438)
T ss_pred hhhhhhccCccHHHHHHHH-HHHHHHHHHHHHHHHhhc-CCc------hHHHHHH-----HHHHHHHh-----------C
Confidence 0 011112111 122333333333433332 221 1111111 11111111 1
Q ss_pred hhcCCCCChhhHHHHHHhhh-hhhhhhHHHHHHhccc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Q 047435 226 LIVPAGPPLGSALVEKCDFV-ISNILLPFFYLRIGLL-TNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLR 303 (724)
Q Consensus 226 l~~~~~~p~~~~l~ekl~~~-~~~~flPlFF~~~G~~-~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~ 303 (724)
+ +|.. -++=..++..| ...+.-|+.+ .+|.. +|+..+.+.-+|.. +++.+...++-..+.++.+|+.|+-+-
T Consensus 308 l-vp~~---i~~GA~~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPV 381 (438)
T COG3493 308 L-VPKE---IEEGAKQLSQFFSKNLTWPLMA-GIGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPV 381 (438)
T ss_pred c-CCHH---HHHHHHHHHHHHHHhhHHHHHH-hhhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 1 2222 11112233333 3344445544 45665 88877655434543 334444555677888999999998555
Q ss_pred HH-HHHHHHhhhhhh-HHHHhhhhccccccCCC
Q 047435 304 FG-ILFSFILNVKGI-NEFMLLNRLRVNFKTID 334 (724)
Q Consensus 304 ~~-~~lg~~m~~kG~-~~l~~~~~~~~~~~~i~ 334 (724)
|+ ..-|+.|+.+|. =++++.+.+-. .++++
T Consensus 382 EaAI~aglC~a~~GGtGDvaVLsAa~R-M~Lmp 413 (438)
T COG3493 382 EAAITAGLCMANMGGTGDVAVLSAADR-MELMP 413 (438)
T ss_pred HHHHHHhHHhcCCCCCCchHHhhhcch-hcccc
Confidence 55 555588877654 46666666555 56655
No 106
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=83.47 E-value=0.73 Score=47.44 Aligned_cols=133 Identities=19% Similarity=0.243 Sum_probs=79.2
Q ss_pred hhhhhhhHHHHHHhcccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhh
Q 047435 245 VISNILLPFFYLRIGLLTNVHSIK-NFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLL 323 (724)
Q Consensus 245 ~~~~~flPlFF~~~G~~~d~~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~ 323 (724)
+.++++=++.|..+|..+|++.+. +++++++. ..+-++ +..+++.+...|+..+|+-.+|.+=.+-|-.++.+.
T Consensus 81 i~~~i~PllIFmGvGAmTDFgpllanPktllLG----aAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t 155 (375)
T COG1883 81 IGSGIFPLLIFMGVGAMTDFGPLLANPKTLLLG----AAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLT 155 (375)
T ss_pred hccCcccHHHHhccchhcccchhhcCcHHHHhh----hHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEec
Confidence 346788888999999999998765 34333221 112222 233455667779999999999998888887777655
Q ss_pred hhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhhccccccCCCCCceeEEEEe
Q 047435 324 NRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQTRCKVTEDKQMRTLQTTPISSELRIFCGV 392 (724)
Q Consensus 324 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~~~~~~~~~~~r~i~~~~~~~elrILvcv 392 (724)
+..-. .+++.-...+--.|+++ -++-||+.|.+--+++|-.. . -|..+.+...||+.|+
T Consensus 156 ~~LAP--~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ERkIr-----M--~qlR~Vsk~EkIlFPi 214 (375)
T COG1883 156 NKLAP--ELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEERKIR-----M--TQLRTVSKREKILFPI 214 (375)
T ss_pred cccCH--HHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHHHhh-----h--hccccccchhhhhhhH
Confidence 43211 22222222222334444 56789999998755544221 1 1222233456788775
No 107
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=83.42 E-value=0.12 Score=57.10 Aligned_cols=112 Identities=18% Similarity=0.345 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChh--hHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHH
Q 047435 201 ILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLG--SALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALET 278 (724)
Q Consensus 201 ~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~--~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ 278 (724)
+..+.+..+.+.++++.++|-.++|+++...+ ++ +.-.+.++.+ ..+.+++.....|.++|...+... +.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~--~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN--WRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc--cccccc
Confidence 33444555788899999999999999988762 22 1112344554 678888888899999999988653 333333
Q ss_pred HHHHHHHHHHHH-HHHHHH---HhCCChhHHHHHHHHhhhhh
Q 047435 279 ILVGAYVGKLVG-SLCTVL---FFGTSLRFGILFSFILNVKG 316 (724)
Q Consensus 279 ii~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lg~~m~~kG 316 (724)
..+..++.-++. ++.... ..|+++.+++.+|..+++-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 333333333343 444443 47899999999999887554
No 108
>PRK10711 hypothetical protein; Provisional
Probab=82.34 E-value=39 Score=34.49 Aligned_cols=109 Identities=11% Similarity=0.161 Sum_probs=70.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhh
Q 047435 237 ALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKG 316 (724)
Q Consensus 237 ~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG 316 (724)
.+..-+.+-+-.+-+|+|= +...+.. .|..+..-+++..+.-++.+++.++++|.+.. +-..|.+|.
T Consensus 61 ~l~~lLgPAtVALAvPLY~-------q~~~lk~--~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkS 127 (231)
T PRK10711 61 VLNDLLQPAVVALAFPLYE-------QLHQIRA--RWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKS 127 (231)
T ss_pred HHHhhhhHHHHHHHHHHHH-------hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhh
Confidence 3444444444455555551 2233332 35545555666666778888889999998766 334588999
Q ss_pred hHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 047435 317 INEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIY 359 (724)
Q Consensus 317 ~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l 359 (724)
...=+...+..+ .|-+.+-+-..++++-++-..+.+++++++
T Consensus 128 VTtPIAm~is~~-iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 128 VTTPIAMAVGGS-IGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hhHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888877 777765555555666666666677777775
No 109
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=81.96 E-value=4.7 Score=42.62 Aligned_cols=113 Identities=18% Similarity=0.168 Sum_probs=70.1
Q ss_pred hhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChhHHHHHHHHhhhhhh
Q 047435 244 FVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGT------SLRFGILFSFILNVKGI 317 (724)
Q Consensus 244 ~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~~~~~lg~~m~~kG~ 317 (724)
.+.++++=|+-|..+|..+|++.+.... . ..++-..+=++ ...+++.+...|+ +.+|+-.+|.+=.+-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP-~--~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANP-R--TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhCh-H--HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 3457888899999999999998775431 1 12222222222 2344555666677 67999999988888888
Q ss_pred HHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 047435 318 NEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQ 363 (724)
Q Consensus 318 ~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~ 363 (724)
.++.+.+..-. +++.+-.-.+-..|+++ =++-||++|.+-.++
T Consensus 135 t~If~s~~lap--~Llg~IaVAAYsYMaLv-PiiqPpimklLttkk 177 (354)
T TIGR01109 135 TAIYLSGKLAP--ELLAAIAVAAYSYMALV-PIIQPPIMKALTSEK 177 (354)
T ss_pred hhhhhHhhhhh--HHHHHHHHHHHHHHHHH-hcccchHHHhhcChH
Confidence 88776654322 23333322333333444 566899999886433
No 110
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=81.85 E-value=59 Score=33.06 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHH
Q 047435 273 FAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIV 352 (724)
Q Consensus 273 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~ 352 (724)
|..+..-++++.+.-+..+++.++.+|.+.. +...+.+|....=+...+..+ .|-..+-+-...+++-++-..+.
T Consensus 87 ~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~----i~~Sl~pkSvTtpiAm~vs~~-iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 87 WKEIILNVAVGSVIAIISGTLLALLLGLGPE----IIASLLPKSVTTPIAMHVSEM-IGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHhhhHHhhHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHH
Confidence 4444444555556667788888899998744 233688999888888888777 77765555555556666666667
Q ss_pred HHHHHHh
Q 047435 353 TPIICIY 359 (724)
Q Consensus 353 ~~l~~~l 359 (724)
+++++++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 7777775
No 111
>PRK12342 hypothetical protein; Provisional
Probab=79.83 E-value=6.2 Score=40.95 Aligned_cols=104 Identities=10% Similarity=0.070 Sum_probs=59.7
Q ss_pred eecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEecChHHH--
Q 047435 554 LFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIAKNTTEV-- 631 (724)
Q Consensus 554 ~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~~~-- 631 (724)
++.=+|.|+-|++-|.|+. ..+.++|++.+-+.. .+ ++..+++......+ .-+........ +.|+
T Consensus 30 ~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~-------a~---~~~l~r~alamGaD-~avli~d~~~~-g~D~~a 96 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSL-------LQ---NSKVRKDVLSRGPH-SLYLVQDAQLE-HALPLD 96 (254)
T ss_pred CccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCCh-------Hh---HHHHHHHHHHcCCC-EEEEEecCccC-CCCHHH
Confidence 4444699999999999999 468899999976531 00 11233443333321 11222212121 2233
Q ss_pred -----HHHHHhhcCCccEEEEcccCCCC-----chhhhccccccCCcccchhhh
Q 047435 632 -----IDVIRRMDGYYNLVIVGKKRAVT-----SRLEEEMKLWVEYEELGVIGD 675 (724)
Q Consensus 632 -----~~~i~~~~~~~dLvivGr~~~~~-----s~~~~gl~~W~e~~eLG~igd 675 (724)
.+.++. .+||||+.|+..... .|++.++.+| |-+..+-+
T Consensus 97 ta~~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~---P~vt~v~~ 145 (254)
T PRK12342 97 TAKALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQL---PVINAVSK 145 (254)
T ss_pred HHHHHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCC---CcEeeEEE
Confidence 233443 259999999987544 5777777777 44444433
No 112
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=79.09 E-value=3 Score=46.77 Aligned_cols=129 Identities=19% Similarity=0.272 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCCEEEec---cccCCC-CCc-c-cchhHHHHHhhcCCCceEEEecCCCCCCCcc----ccCCcceEEE
Q 047435 483 HESICELVKEKFIPLVVLP---FNKKRQ-GRT-T-NLQNFDMNIQAHAPCTVGLLVDKSSTTGHFY----SIGHFTYSLV 552 (724)
Q Consensus 483 ~~~I~~~A~e~~~~lIIlp---~h~~~~-g~~-~-~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~----~~~~~~~~I~ 552 (724)
.++||.+|+|+++|+|++| ||.... .+. + .++.+-+.-+..-||..=++-|.+....... .-.....+|.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIs 120 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNIS 120 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCccee
Confidence 5799999999999999999 777654 111 2 4566666677788999999888864321110 0011135788
Q ss_pred EeecC--CcchHH-------HHHH------HHHHhcCCCe-EEEEEEEeecccccc--chhhhhhhHHHHHHHHHhh
Q 047435 553 VLFLG--GADDRE-------ALAL------VSRMSGHPGL-SITVFRITVIEDEQS--EYDCERHLDEIAINEFITN 611 (724)
Q Consensus 553 v~f~G--G~ddre-------AL~~------a~rma~~~~~-~ltv~r~~~~~~~~~--~~~~~~~~d~~~i~~~~~~ 611 (724)
+|.++ |.||.- ||.+ ..-..+.+++ ++.|.=++...-+.. -..--...|+++..-|+..
T Consensus 121 IPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~~ 197 (646)
T KOG2310|consen 121 IPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKGSTKLALYGLGSIRDERLYRMFKNG 197 (646)
T ss_pred eeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccCceeEEEeeccccchHHHHHHHHhC
Confidence 88876 765522 4443 2334444544 666665553210000 0001113366777777653
No 113
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=78.53 E-value=6 Score=41.11 Aligned_cols=108 Identities=6% Similarity=0.022 Sum_probs=60.9
Q ss_pred eecCCcchHHHHHHHHHHhcCCC-eEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEE-EEe--cChH
Q 047435 554 LFLGGADDREALALVSRMSGHPG-LSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQ-VIA--KNTT 629 (724)
Q Consensus 554 ~f~GG~ddreAL~~a~rma~~~~-~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e-~~v--~~~~ 629 (724)
++.=.|.|+-|++.|.|+.++.+ .++|++.+-+.+.+ +++.+++-..... ++....+ ... .|.-
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~----------~~~~lr~aLAmGa--D~avli~d~~~~g~D~~ 98 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT----------NAKGRKDVLSRGP--DELIVVIDDQFEQALPQ 98 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh----------hHHHHHHHHHcCC--CEEEEEecCcccCcCHH
Confidence 33345899999999999998754 89999997654111 1234544444332 2222221 111 1322
Q ss_pred HHHHHHHhh--cCCccEEEEcccCCC-----CchhhhccccccCCcccchhhhh
Q 047435 630 EVIDVIRRM--DGYYNLVIVGKKRAV-----TSRLEEEMKLWVEYEELGVIGDT 676 (724)
Q Consensus 630 ~~~~~i~~~--~~~~dLvivGr~~~~-----~s~~~~gl~~W~e~~eLG~igd~ 676 (724)
.|..+|... ..+||||+.|+..-. -.+++.++.+| |-+..+-++
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~---P~vt~v~~l 149 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNI---PAINGVSKI 149 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCC---CceeeEEEE
Confidence 333333222 135999999998633 23556666665 666655554
No 114
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=77.47 E-value=29 Score=37.23 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=67.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 22 PRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACL-VIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 22 ~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~-lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
|..-.+.++.+++...-+-||..|+.++.+.+++..+........-+ +.|.+. ++++..++.. ...... .+
T Consensus 202 P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~-~~~~~~~~l~-----~~~~~~--~v 273 (321)
T TIGR00946 202 PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVM-AGISKLIGLR-----GLELSV--AI 273 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-----hHHHHH--HH
Confidence 44457889999999999999999999998888777666665555555 445443 4444444321 222333 45
Q ss_pred hhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 047435 101 LLSMTYFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALM 144 (724)
Q Consensus 101 ~~s~Ts~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~ 144 (724)
+++....++...++.+.--.+. +.+.+...++-+++.+.+.
T Consensus 274 l~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 274 LQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 5555666666666655332333 4444444455555544443
No 115
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=77.11 E-value=3.7 Score=40.66 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHh
Q 047435 275 ALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFML 322 (724)
Q Consensus 275 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~ 322 (724)
..+.+-+...++-++++++.+++.++|++|++.++..+.=-......+
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i 104 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLI 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHH
Confidence 355677778888999999999999999999999887665444444333
No 116
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=77.07 E-value=1.1e+02 Score=33.91 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=68.7
Q ss_pred hhhhhHHHHHHhcccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH-Hh-hhhhhHHHHhh
Q 047435 247 SNILLPFFYLRIGLLTNVHSIKNF-KSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSF-IL-NVKGINEFMLL 323 (724)
Q Consensus 247 ~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~-~m-~~kG~~~l~~~ 323 (724)
.++|+-+||+.+|+..++..+... ........+..+..+...+.....+..+|+++.-++..|- .| .-+|...-.--
T Consensus 66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~ 145 (398)
T TIGR00210 66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSP 145 (398)
T ss_pred HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHH
Confidence 367899999999999998877643 1122223334445566777777778899999987766432 22 23343332222
Q ss_pred hhccccccCCChhhHHH--HHHHHHHHHHHHHHHHHHhcC
Q 047435 324 NRLRVNFKTIDEASYAT--MVLSHLAVNAIVTPIICIYHK 361 (724)
Q Consensus 324 ~~~~~~~~~i~~~~~~~--lv~~~ll~t~i~~~l~~~l~~ 361 (724)
.+.-+ .|+-+.....+ -.+..+..+++..|+.+++.|
T Consensus 146 ~f~e~-~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lir 184 (398)
T TIGR00210 146 VFYDN-YGFRNATEIAIACATFGLVFGGIIGGPVAKFLII 184 (398)
T ss_pred HHHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22122 45555443333 333456667788999999865
No 117
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=77.03 E-value=4.9 Score=43.72 Aligned_cols=117 Identities=18% Similarity=0.140 Sum_probs=66.4
Q ss_pred hhhhhhhHHHHHHhcccccccccccc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhh-HHHH
Q 047435 245 VISNILLPFFYLRIGLLTNVHSIKNF-KSF-AALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGI-NEFM 321 (724)
Q Consensus 245 ~~~~~flPlFF~~~G~~~d~~~l~~~-~~~-~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~-~~l~ 321 (724)
...+.|+-+||+.+|+.-++..+... +.. +.......+. ...-......++..|.++.-++..|-+--..|+ .+.+
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~-~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA 144 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLA-VLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAA 144 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHH-HHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHH
Confidence 34678999999999999999887653 111 1112222222 234444455566778877766666443323332 2334
Q ss_pred hhhhccccccCCChhhH--HHHHHHHHHHHHHHHHHHHHhcCcc
Q 047435 322 LLNRLRVNFKTIDEASY--ATMVLSHLAVNAIVTPIICIYHKPQ 363 (724)
Q Consensus 322 ~~~~~~~~~~~i~~~~~--~~lv~~~ll~t~i~~~l~~~l~~p~ 363 (724)
......+ .|.-+.... ..-.+..+.-.++.+|+.+|+.++.
T Consensus 145 ~~~~f~~-~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~ 187 (404)
T COG0786 145 WGPTFED-LGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKN 187 (404)
T ss_pred HHHHHHh-cCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhc
Confidence 4555555 555543222 2223334445667899999998533
No 118
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=76.98 E-value=31 Score=32.91 Aligned_cols=86 Identities=8% Similarity=-0.034 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHH---Hhh-hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh-
Q 047435 26 MMVINTLSTLSGVYFIFIISVKMDTVKIL---RAA-KHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS- 100 (724)
Q Consensus 26 ~~~l~~l~~iGl~~~lF~~Gle~d~~~l~---~~~-k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~- 100 (724)
......+.++|+.+|++.+|++--.+.+. +.+ -....++..-.++|.+++.+++..+.+. ...... |+
T Consensus 49 ~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~-----~~~~~~--G~~ 121 (154)
T TIGR01625 49 FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRI-----NYALTA--GML 121 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHH--HHH
Confidence 44677899999999999999999876644 433 1233344444455555555554433221 122333 43
Q ss_pred hhccccHHHHHHHHHhcc
Q 047435 101 LLSMTYFSTVADAVSELK 118 (724)
Q Consensus 101 ~~s~Ts~~vv~~iL~el~ 118 (724)
+=+.|++|.+....+..+
T Consensus 122 aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 122 AGATTNTPALDAANDTLR 139 (154)
T ss_pred hccccChHHHHHHHHHhc
Confidence 347788888877665443
No 119
>PRK03818 putative transporter; Validated
Probab=74.79 E-value=38 Score=39.47 Aligned_cols=84 Identities=7% Similarity=0.120 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh-h
Q 047435 26 MMVINTLSTLSGVYFIFIISVKMDTVK---ILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS-L 101 (724)
Q Consensus 26 ~~~l~~l~~iGl~~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~-~ 101 (724)
.....++.++|+.+|+|.+|++.=+.. +++.+.+-..+++.-.++|.+++++..++++.. ..... |+ +
T Consensus 56 ~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--G~~a 127 (552)
T PRK03818 56 SDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIP------LPVML--GIFS 127 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHH--HHhh
Confidence 456777999999999999999998876 455566666777777777777766665554432 12223 33 3
Q ss_pred hccccHHHHHHHHHhc
Q 047435 102 LSMTYFSTVADAVSEL 117 (724)
Q Consensus 102 ~s~Ts~~vv~~iL~el 117 (724)
=+.|++|.+....+..
T Consensus 128 Ga~T~tp~l~aa~~~~ 143 (552)
T PRK03818 128 GAVTNTPALGAGQQIL 143 (552)
T ss_pred ccccccHHHHHHHHHH
Confidence 4678888876665433
No 120
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=74.46 E-value=37 Score=37.67 Aligned_cols=112 Identities=14% Similarity=0.234 Sum_probs=65.9
Q ss_pred HHHHHHhchhHHHHHHHHHhhcCCCC----ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHH
Q 047435 207 GALTDMLGVSFALGALIVGLIVPAGP----PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVG 282 (724)
Q Consensus 207 ~~~~~~~G~~~~lGaFlaGl~~~~~~----p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~ 282 (724)
+.++..+|....+=-...|++....+ ++.. ..+-.++..+-+.+...-.|++++++.+... .+..+.+..+.
T Consensus 23 s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdN---y~~Ay~vg~lALaiILfdgG~~T~lss~r~a-~~palsLATlG 98 (574)
T COG3263 23 SLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDN---YPFAYMVGNLALAIILFDGGFGTQLSSFRVA-AGPALSLATLG 98 (574)
T ss_pred HHHHHHcCchHHHHHHHHHHHcCCCcccccccCc---cHHHHHHHHHHHHHHhhcCccCCcHHHHHHH-hhhhHHHHHHH
Confidence 33444455554444445555555431 1111 1233344556666666778999998877542 23333344444
Q ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHh
Q 047435 283 AYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFML 322 (724)
Q Consensus 283 ~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~ 322 (724)
..+.-.+....+.+.++.+|-|++.+|.+....-..++..
T Consensus 99 Vl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~ 138 (574)
T COG3263 99 VLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFS 138 (574)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHH
Confidence 5555556667777889999999999999887655444433
No 121
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=73.98 E-value=82 Score=31.83 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHH
Q 047435 272 SFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAI 351 (724)
Q Consensus 272 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i 351 (724)
.|..+..-++...+.-++.+++.++++|.+..- ...+.+|....=+...+..+ .|-...-.-..++++-++-..+
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~----~~Sl~pkSVTtpiAi~is~~-iGG~~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPEI----ILSLAPKSVTTPIAIEISEQ-IGGIPSLTAVFVVITGILGAVL 150 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHHHHHhhHHHHHHHHHH-hCChHHHHHHHHHHHhhHHHHh
Confidence 355555556666667778888889999987653 34578898888887777777 7777655555555666666666
Q ss_pred HHHHHHHh
Q 047435 352 VTPIICIY 359 (724)
Q Consensus 352 ~~~l~~~l 359 (724)
.+++++++
T Consensus 151 g~~llk~~ 158 (215)
T PF04172_consen 151 GPPLLKLL 158 (215)
T ss_pred HHHHHhHc
Confidence 77777774
No 122
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=72.85 E-value=1e+02 Score=33.45 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHhchhH--HHH-HHHHHhhcCCC---CChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccc
Q 047435 195 YVIGLMILPIAMGALTDMLGVSF--ALG-ALIVGLIVPAG---PPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIK 268 (724)
Q Consensus 195 ~~~~il~~~l~~~~~~~~~G~~~--~lG-aFlaGl~~~~~---~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~ 268 (724)
++...+.+.+..+++.+..|+.. ++| +.++|++..-. -+..+.+. .+-.-+--..+|.++..+.+.
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P~~l~--------~~~q~ilG~~ig~~~t~s~l~ 81 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLPRGLF--------KAGQVILGIMIGASLTPSVLD 81 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCChHHH--------HHHHHHHHHHHhhhcCHHHHH
Confidence 34455556667788888888854 688 66667665422 11221111 112223345677778777665
Q ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhh
Q 047435 269 NFK-SFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNR 325 (724)
Q Consensus 269 ~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~ 325 (724)
..+ .|....++.++.+..-.+..++..|+.+.|..+++ +...|.|..++.....
T Consensus 82 ~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA~ 136 (352)
T COG3180 82 TLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIAQ 136 (352)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHHH
Confidence 432 46666677777777788888999998888877775 3577877777765553
No 123
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=72.24 E-value=16 Score=40.21 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=68.8
Q ss_pred HHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 047435 223 IVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTN-VHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTS 301 (724)
Q Consensus 223 laGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d-~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~ 301 (724)
++|....+..-+.++-.+.+..++..+++|.+.+..=.+.+ ...+.+ ++.+.+..++..+.=++.+++..++++.+
T Consensus 14 ~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (385)
T PF03547_consen 14 LLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSRLFRLP 90 (385)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444434566667788889999999999765544433 333332 33344333444444456667777777777
Q ss_pred hhHHH--HHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 047435 302 LRFGI--LFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHK 361 (724)
Q Consensus 302 ~~~~~--~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~ 361 (724)
.++.- .++...+.-|.+.+-+....+. ++.....++..++.+++.-++...+..
T Consensus 91 ~~~~~~~~~~~~~~N~~~lglpi~~~l~g------~~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 91 KEWRGVFVLAASFGNTGFLGLPILQALFG------ERGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred cccceEEEecccCCcchhhHHHHHHHHhc------chhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 66543 2233334445555555554444 233333333344444444444444443
No 124
>COG2985 Predicted permease [General function prediction only]
Probab=71.38 E-value=11 Score=42.17 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhccChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh-hhccccHHH
Q 047435 34 TLSGVYFIFIISVKMDTVK---ILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS-LLSMTYFST 109 (724)
Q Consensus 34 ~iGl~~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~-~~s~Ts~~v 109 (724)
++|+++|.+.+|+|--+.. +++.+++-..++++- ++.+..+++.+...+ +++. .+.. |. +=+.||+|.
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~-~~~~-~~~~--Gm~sGAlTsTP~ 133 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF-GIDL-GLIA--GMFSGALTSTPG 133 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc-CCCH-HHhh--hhhcccccCCch
Confidence 8999999999999998765 677777777666653 334444555554443 2211 1111 22 224555555
Q ss_pred H---HHHHHhcccc
Q 047435 110 V---ADAVSELKLL 120 (724)
Q Consensus 110 v---~~iL~el~ll 120 (724)
. ..+|+|++..
T Consensus 134 L~aa~~~L~~lg~~ 147 (544)
T COG2985 134 LGAAQDILRELGAP 147 (544)
T ss_pred hHHHHHHHHhhccc
Confidence 4 4567777653
No 125
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=70.26 E-value=11 Score=40.20 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=43.4
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCe-EEEEEEEeeccccccchhhhhhhHHHHHHHHHhhc
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGL-SITVFRITVIEDEQSEYDCERHLDEIAINEFITNN 612 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~-~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~ 612 (724)
..+|||-|.||+|.-..|+++...|++.+- ++.|+++ +- |-+....-+.++|....+
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi-D~-------E~QYs~TidyV~em~~~~ 84 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI-DW-------EAQYSCTIDYVQEMRESY 84 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE-cc-------hhhhhhHHHHHHHHHhcc
Confidence 359999999999999999999999877665 7888884 11 344455567788777754
No 126
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=70.25 E-value=16 Score=42.66 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh-h
Q 047435 26 MMVINTLSTLSGVYFIFIISVKMDTVK---ILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS-L 101 (724)
Q Consensus 26 ~~~l~~l~~iGl~~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~-~ 101 (724)
.....++.++|+.+|++.+|+.-=.+. +++.+.+...+|..-.++|.++++.+++++.+. .....+ |+ +
T Consensus 443 ~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--G~~a 515 (562)
T TIGR03802 443 SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKY-----DPALLL--GALA 515 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHH--HHhh
Confidence 556678999999999999999987765 566666777777777778888887777544332 122333 43 4
Q ss_pred hccccHHHHHHHHHhc
Q 047435 102 LSMTYFSTVADAVSEL 117 (724)
Q Consensus 102 ~s~Ts~~vv~~iL~el 117 (724)
=+.|++|.+....+..
T Consensus 516 G~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 516 GARTATPALGAVLERA 531 (562)
T ss_pred ccCCCcHHHHHHHHhc
Confidence 5778888877765544
No 127
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=69.04 E-value=32 Score=40.12 Aligned_cols=75 Identities=12% Similarity=0.047 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChhHHHHHHHHhhhhhh
Q 047435 247 SNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLF---------FGTSLRFGILFSFILNVKGI 317 (724)
Q Consensus 247 ~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~---------~~~~~~~~~~lg~~m~~kG~ 317 (724)
..+++|......|+.+|...+... +..+..+.+.+++.-.+.+....++ .++|+.+++.+|.++++..-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n--~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFEN--LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 457888888899999999888753 4433333333332222222222221 25699999999999999887
Q ss_pred HHHHhh
Q 047435 318 NEFMLL 323 (724)
Q Consensus 318 ~~l~~~ 323 (724)
+.+...
T Consensus 147 VAVlai 152 (559)
T TIGR00840 147 VAVLAV 152 (559)
T ss_pred HHHHHH
Confidence 776643
No 128
>PRK03818 putative transporter; Validated
Probab=67.89 E-value=56 Score=38.03 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCCCC-ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 219 LGALIVGLIVPAGP-PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNF--KSFAALETILVGAYVGKLVGSLCTV 295 (724)
Q Consensus 219 lGaFlaGl~~~~~~-p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~~ii~~~~~~K~~~~~l~~ 295 (724)
-|++++|+++..-. +++-.+.+....+..++.+-+|...+|++.-...+... ..+...++-+++.+ .-.+.+++..
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~-~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVI-LGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 57788888887621 22222333445556788999999999999987665432 13443333333333 3344466668
Q ss_pred HHhCCChhHH
Q 047435 296 LFFGTSLRFG 305 (724)
Q Consensus 296 ~~~~~~~~~~ 305 (724)
+++|+++-..
T Consensus 113 ~~~~~~~~~~ 122 (552)
T PRK03818 113 KLFGIPLPVM 122 (552)
T ss_pred HHhCCCHHHH
Confidence 8899987643
No 129
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=66.38 E-value=19 Score=34.43 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCCC---ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccch--h-HHHHHHHHHHHHHHHHHHH
Q 047435 218 ALGALIVGLIVPAGP---PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFK--S-FAALETILVGAYVGKLVGS 291 (724)
Q Consensus 218 ~lGaFlaGl~~~~~~---p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~--~-~~~~~~ii~~~~~~K~~~~ 291 (724)
.-|++++|+++..-. |....+.+....+..++.+-+|...+|++.-...+...+ . +.......++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 457778888776543 333344445566677889999999999998765443211 2 2222233344444446666
Q ss_pred HHHHHHhCCChhHH
Q 047435 292 LCTVLFFGTSLRFG 305 (724)
Q Consensus 292 ~l~~~~~~~~~~~~ 305 (724)
++..+++|+++...
T Consensus 104 ~~~~~~~~~~~~~~ 117 (154)
T TIGR01625 104 VALIKLLRINYALT 117 (154)
T ss_pred HHHHHHhCCCHHHH
Confidence 77778899987643
No 130
>COG2855 Predicted membrane protein [Function unknown]
Probab=65.57 E-value=17 Score=38.92 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=45.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 047435 22 PRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAM 76 (724)
Q Consensus 22 ~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~ 76 (724)
|....+.+..++++-+.+=|.-+|++.|++.++|.+.|.+..++.+++.-.+.+.
T Consensus 273 P~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l~~~~l 327 (334)
T COG2855 273 PAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFLVVGGL 327 (334)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 5556788999999999999999999999999999999999888876654443333
No 131
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=64.62 E-value=52 Score=39.43 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=76.4
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhc-cCCCceEEEEEEec
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNN-ISNACVACRQVIAK 626 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~-~~~~~v~y~e~~v~ 626 (724)
..+|+|-..|+|....-++.|.|+|+.-++..|++++...+..... +.++ +.+.+-..-. ..+..+ +++.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~-~~~~----~~l~~~~~Lae~lGae~----~~l~ 318 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLS-EKEA----RRLHENLRLAEELGAEI----VTLY 318 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccccc-HHHH----HHHHHHHHHHHHhCCeE----EEEe
Confidence 4799999999999999999999999999999999998644221100 1122 2222222211 012211 1233
Q ss_pred ChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEEe
Q 047435 627 NTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQC 694 (724)
Q Consensus 627 ~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvqq 694 (724)
+.++.+.|-+-+ .+.--+|+|++++. .|-+.-. |.+.|.|++. ...-.|-+|--
T Consensus 319 -~~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~---~~~idv~ii~~ 374 (890)
T COG2205 319 -GGDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLARE---APGIDVHIVAL 374 (890)
T ss_pred -CCcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc---CCCceEEEeeC
Confidence 345556655554 34577999999874 4532222 8999999975 44455555543
No 132
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=64.06 E-value=14 Score=42.32 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=44.8
Q ss_pred hhhhhHHHHHHhcccccccccccchhHHHHHH---------HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhh
Q 047435 247 SNILLPFFYLRIGLLTNVHSIKNFKSFAALET---------ILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGI 317 (724)
Q Consensus 247 ~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~---------ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~ 317 (724)
..+++|--....|.+++-..+... ++-+.. ..++....|+.+. ....++++++|++++|.+.++---
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n--~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRN--IGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred HHHhhchhhhcccceechhhhhhh--hHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCc
Confidence 466777777788999997776542 221111 1122223333332 223468999999999999987766
Q ss_pred HHHHhhh
Q 047435 318 NEFMLLN 324 (724)
Q Consensus 318 ~~l~~~~ 324 (724)
+..+..-
T Consensus 178 VtvLaIf 184 (575)
T KOG1965|consen 178 VTVLAIF 184 (575)
T ss_pred hHHHHHH
Confidence 6554433
No 133
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=62.60 E-value=17 Score=34.85 Aligned_cols=94 Identities=14% Similarity=0.004 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEE-ec--ChHHHHHHH
Q 047435 559 ADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVI-AK--NTTEVIDVI 635 (724)
Q Consensus 559 ~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~-v~--~~~~~~~~i 635 (724)
+.|+|+|+.|+++++..+.+++++-+-+. + + .++.+++...++. -++|...+-- .. +.+...+++
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~--~--------~-~~~~l~~~l~~~G-~d~v~~~~~~~~~~~~~~~~a~~l 82 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPA--E--------E-AAEALRKALAKYG-ADKVYHIDDPALAEYDPEAYADAL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETC--C--------C-HHHHHHHHHHSTT-ESEEEEEE-GGGTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecc--h--------h-hHHHHhhhhhhcC-CcEEEEecCccccccCHHHHHHHH
Confidence 78999999999999999999998876421 1 1 2223333333221 1334332211 11 234455555
Q ss_pred Hhhc--CCccEEEEcccCCC--Cchhhhccccc
Q 047435 636 RRMD--GYYNLVIVGKKRAV--TSRLEEEMKLW 664 (724)
Q Consensus 636 ~~~~--~~~dLvivGr~~~~--~s~~~~gl~~W 664 (724)
.+.. .++|++++|.+... -.+......+|
T Consensus 83 ~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~ 115 (164)
T PF01012_consen 83 AELIKEEGPDLVLFGSTSFGRDLAPRLAARLGA 115 (164)
T ss_dssp HHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-
T ss_pred HHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCC
Confidence 5554 45999999988532 23444444454
No 134
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=62.15 E-value=51 Score=32.11 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=31.2
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEe
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRIT 585 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~ 585 (724)
+|++.+.||.|.--++.++.+.+++.+.+++++++-
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999887777778888863
No 135
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=60.87 E-value=56 Score=34.81 Aligned_cols=49 Identities=14% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047435 35 LSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILS 83 (724)
Q Consensus 35 iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~ 83 (724)
+++.++.|..|..+|++.+.+.+-+.+.+++..+.+++.+++.+..+++
T Consensus 196 f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg 244 (312)
T PRK12460 196 LLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVG 244 (312)
T ss_pred EeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4888889999999999999999999999999888888888888887664
No 136
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=58.50 E-value=36 Score=36.34 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.4
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGHPGLSITVFRI 584 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~ 584 (724)
.++++.|.||+|+--.|.++++.-......+.++++
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~i 63 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHV 63 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEE
Confidence 378999999999999999998875543556677764
No 137
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=58.00 E-value=31 Score=36.63 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRI 584 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~ 584 (724)
+.++.|.||+|+--.|.++++.-...+..+.++++
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~I 55 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHV 55 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEE
Confidence 45778999999999999999886544566777774
No 138
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=57.81 E-value=41 Score=32.79 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=52.7
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEe----
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIA---- 625 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v---- 625 (724)
+|+|-+.||+|.--.|.++..+.++.+.+++++++-..-. .+...+.+.++++-++.. -+..+.+...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~------~~s~~~~~~v~~~~~~~~--i~~~~~~~~~~~~~ 72 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR------EESDEEAEFVEEICEQLG--IPLYIVRIDEDRKK 72 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS------CCHHHHHHHHHHHHHHTT---EEEEEE--CHCCT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC------cccchhHHHHHHHHHhcC--CceEEEEeeeeecc
Confidence 5889999999999999999999999888999999643211 112234566777776652 2222222111
Q ss_pred -cChHHHHH-----HHHhhc--CCccEEEEcccCC
Q 047435 626 -KNTTEVID-----VIRRMD--GYYNLVIVGKKRA 652 (724)
Q Consensus 626 -~~~~~~~~-----~i~~~~--~~~dLvivGr~~~ 652 (724)
.+-++... .+.+.+ .++|.++.|-..+
T Consensus 73 ~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 73 GSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp TSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred cCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 11122222 232343 4579998887754
No 139
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=56.43 E-value=1.3e+02 Score=35.17 Aligned_cols=93 Identities=13% Similarity=0.163 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhcCCC---CChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHH
Q 047435 216 SFALGALIVGLIVPAG---PPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNF--KSFAALETILVGAYVGKLVG 290 (724)
Q Consensus 216 ~~~lGaFlaGl~~~~~---~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~~ii~~~~~~K~~~ 290 (724)
....|++++|+++... .|....+.+.-..+...+.+-+|.+.+|++.-...+... ..|...+ +-++.++.=.+.
T Consensus 416 g~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~-~g~~~~~~~~~~ 494 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFL-LGIVVTILPLII 494 (562)
T ss_pred hhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHH-HHHHHHHHHHHH
Confidence 4467899999998764 233223444445556788899999999999876554321 1233222 222333333344
Q ss_pred HHHHH-HHhCCChhHHHHHHHH
Q 047435 291 SLCTV-LFFGTSLRFGILFSFI 311 (724)
Q Consensus 291 ~~l~~-~~~~~~~~~~~~lg~~ 311 (724)
+++.+ +++|+++... +|.+
T Consensus 495 ~~~~~~~~~~~~~~~~--~G~~ 514 (562)
T TIGR03802 495 TMLIGKYVLKYDPALL--LGAL 514 (562)
T ss_pred HHHHHHHHhCCCHHHH--HHHh
Confidence 55555 6789887643 4443
No 140
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=56.34 E-value=1e+02 Score=33.17 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 219 LGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFK-SFAALETILVGAYVGKLVGSLCTVLF 297 (724)
Q Consensus 219 lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~ 297 (724)
+||.+++.+.....+..-....++ ..+...+--+.+|.+++...+..-. .|....++.+...+.-.+..++..|+
T Consensus 3 lG~~ia~~~~~~~~~~~~~~p~~~----r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ 78 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPLRVPRRL----RNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRI 78 (318)
T ss_pred hHHHHHHHHHHHhCCCccCCCHHH----HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665553322221112222 2334455667889999987765432 34445566666677778888888999
Q ss_pred hCCChhHHHHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHH-HHHHHHHHHHHHHHhcC
Q 047435 298 FGTSLRFGILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLS-HLAVNAIVTPIICIYHK 361 (724)
Q Consensus 298 ~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~-~ll~t~i~~~l~~~l~~ 361 (724)
.+++..+++. ...|-|..+++... .+ .|- |...-+.+=.. +++...+.|+++.+..+
T Consensus 79 ~~~d~~TA~~---~~~PGg~s~m~~la--~~-~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~ 136 (318)
T PF05145_consen 79 SGLDRATAFF---ASMPGGLSEMVALA--EE-YGA-DTRRVALVQSLRLLLVVLLVPFIASLLGG 136 (318)
T ss_pred cCCChhHHHH---HcCCccHHHHHHHH--HH-cCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999888764 46677877777555 33 332 33222221111 22223456777777665
No 141
>PRK04972 putative transporter; Provisional
Probab=54.04 E-value=98 Score=36.11 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhccChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh-hhccccH
Q 047435 32 LSTLSGVYFIFIISVKMDTVK---ILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS-LLSMTYF 107 (724)
Q Consensus 32 l~~iGl~~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~-~~s~Ts~ 107 (724)
+.++|+.+|+|.+|++.-+.. +|+.+.+-..+++.-.+++++++...+++++... .... |+ +=+.|++
T Consensus 61 ~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--G~~aGa~T~t 132 (558)
T PRK04972 61 ALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI------GLTA--GMLAGSMTST 132 (558)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHH--HHhhccccCc
Confidence 468999999999999998876 4555666677777777777777777666554321 2222 32 3356777
Q ss_pred HHHHHHHH
Q 047435 108 STVADAVS 115 (724)
Q Consensus 108 ~vv~~iL~ 115 (724)
|.+....+
T Consensus 133 p~l~~a~~ 140 (558)
T PRK04972 133 PVLVGAGD 140 (558)
T ss_pred HHHHHHHH
Confidence 77766555
No 142
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=53.75 E-value=1.3e+02 Score=33.27 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=60.9
Q ss_pred HhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHh---hhhhh
Q 047435 242 CDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTS-LRFGILFSFIL---NVKGI 317 (724)
Q Consensus 242 l~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~~~~~~lg~~m---~~kG~ 317 (724)
+.+.+++.++|+-....=++.|++.+... . +..+...+++.++-.+|+.+....++.. -.|...++..+ ..-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRL-G-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 45566778888888777788999887642 2 2344555666667777777777766644 23444333333 34577
Q ss_pred HHHHhhhhccccccCCChhhHHHHHHH
Q 047435 318 NEFMLLNRLRVNFKTIDEASYATMVLS 344 (724)
Q Consensus 318 ~~l~~~~~~~~~~~~i~~~~~~~lv~~ 344 (724)
+..+...-+++ .+++.++..+.+
T Consensus 130 ~N~~Av~~al~----~~~~~~~a~~aa 152 (378)
T PF05684_consen 130 VNFVAVAEALG----VSDSLFAAALAA 152 (378)
T ss_pred hHHHHHHHHHC----CCHHHHHHHHHH
Confidence 77777766655 256666665554
No 143
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=52.67 E-value=2.9e+02 Score=29.81 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=52.6
Q ss_pred HHhccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHh---hhhhhHHHHhhhhccccc
Q 047435 256 LRIGLLTNVHSIKN-FKSFAALETILVGAYVGKLVGSLCTVLFF-GTSLRFGILFSFIL---NVKGINEFMLLNRLRVNF 330 (724)
Q Consensus 256 ~~~G~~~d~~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~-~~~~~~~~~lg~~m---~~kG~~~l~~~~~~~~~~ 330 (724)
...|+++++.++.+ .+.+.......+.-++...+.++..++.+ +.+.. +.+|+++ +|-|..+.+...++.-
T Consensus 54 f~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lAkG-- 129 (328)
T TIGR00832 54 YPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLAKG-- 129 (328)
T ss_pred HHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHcCC--
Confidence 34457776666643 22344455556666667777777777754 65543 6677665 5666666665555533
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 047435 331 KTIDEASYATMVLSHLAVNAIVTPIICIY 359 (724)
Q Consensus 331 ~~i~~~~~~~lv~~~ll~t~i~~~l~~~l 359 (724)
-.. -.-+...+..++..++.|+++..+
T Consensus 130 -nva-lsv~lt~~stLl~~~~~P~l~~ll 156 (328)
T TIGR00832 130 -DPE-YTLVLVAVNSLFQVFLYAPLAWLL 156 (328)
T ss_pred -CHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 112223344444444445555544
No 144
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=51.91 E-value=76 Score=33.05 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=63.4
Q ss_pred eecCCcchHHHHHHHHHHhc-CCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEE-EE--ecChH
Q 047435 554 LFLGGADDREALALVSRMSG-HPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQ-VI--AKNTT 629 (724)
Q Consensus 554 ~f~GG~ddreAL~~a~rma~-~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e-~~--v~~~~ 629 (724)
|..=.|.|+-|+|.|.|+.+ ..+.++|++.+-+.+ .++.+.+-.... -++..-.+ .. =.|..
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~------------a~~~lr~aLAmG--aDraili~d~~~~~~d~~ 97 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ------------AEEALREALAMG--ADRAILITDRAFAGADPL 97 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchh------------hHHHHHHHHhcC--CCeEEEEecccccCccHH
Confidence 33335899999999999999 689999999976431 112233322222 23332222 11 12334
Q ss_pred HHHHHHHhhc--CCccEEEEcccCCCC-----chhhhccccccCCcccchhhhhhh
Q 047435 630 EVIDVIRRMD--GYYNLVIVGKKRAVT-----SRLEEEMKLWVEYEELGVIGDTLA 678 (724)
Q Consensus 630 ~~~~~i~~~~--~~~dLvivGr~~~~~-----s~~~~gl~~W~e~~eLG~igd~la 678 (724)
.+..+|.+.. .++||++.|...... .+++..+.+| |....+-++-.
T Consensus 98 ~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~---P~~t~v~~i~~ 150 (260)
T COG2086 98 ATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGW---PQVTYVSKIEI 150 (260)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCC---ceeeeEEEEEE
Confidence 4555555432 458899999986432 3455555565 77776666553
No 145
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=50.86 E-value=67 Score=34.43 Aligned_cols=93 Identities=12% Similarity=0.159 Sum_probs=47.3
Q ss_pred eEEEcccccCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHhhhHHHHHHHHHHHHHHH---HHH
Q 047435 2 GIVLGPSVLSRNKIIMDTIFPRREMMVINTLSTLSGVYFIFIISVKM--DTVKILRAAKHTWFITIACLVIPYM---IAM 76 (724)
Q Consensus 2 GiiLGPs~Lg~~~~~~~~~f~~~~~~~l~~l~~iGl~~~lF~~Gle~--d~~~l~~~~k~~~~i~~~~~lip~~---~g~ 76 (724)
|.+-||.....++.|...+|. =-+.+||...|++- .++.+|+.+.+ .-..+++.|.+ +|.
T Consensus 190 G~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A~~rL~~l~~~g~~---li~Fgi~~Pli~a~ig~ 254 (327)
T PF05982_consen 190 GFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVAARRLRDLRKVGWF---LIAFGILMPLINALIGI 254 (327)
T ss_pred hheeCccchhhccchhhccHH------------HHHHHHHHHhhHHHHHhhHHHHhhhHH---HHHHHHHHHHHHHHHHH
Confidence 556677666555555444442 22456677777754 23344544444 44555667765 556
Q ss_pred HHHHHhhhcCCCcchhHHHHHhhhhhccccHHHHHH
Q 047435 77 FLSRILSDYTPGVERGLFRLYFTSLLSMTYFSTVAD 112 (724)
Q Consensus 77 ~~~~~l~~~~~~~~~~~l~l~~~~~~s~Ts~~vv~~ 112 (724)
.++++++.... ...++..++...|-.+.|...|
T Consensus 255 ~lg~~~gls~G---g~~llavLaASASYIAvPAAmR 287 (327)
T PF05982_consen 255 GLGWLLGLSPG---GAVLLAVLAASASYIAVPAAMR 287 (327)
T ss_pred HHHHHhCCCCc---cHHHHHHHHhhHhhhhhhHHHH
Confidence 66666655431 2333332233334444454444
No 146
>PRK04972 putative transporter; Provisional
Probab=50.72 E-value=60 Score=37.88 Aligned_cols=86 Identities=6% Similarity=0.045 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccChHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhh
Q 047435 25 EMMVINTLSTLSGVYFIFIISVKMDTVK---ILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSL 101 (724)
Q Consensus 25 ~~~~l~~l~~iGl~~~lF~~Gle~d~~~---l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~ 101 (724)
......++.++|+.+|+..+|+.-=.+. +++.+-+...+|..-.++|.++++.+++++.+. .....+ .+++
T Consensus 437 p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~-----~~~~~~-G~~a 510 (558)
T PRK04972 437 PQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRM-----NRALLF-GAIM 510 (558)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHH-HHHh
Confidence 3667788999999999999999876654 455666777788888888888888888655443 122333 1344
Q ss_pred hccccHHHHHHHHHh
Q 047435 102 LSMTYFSTVADAVSE 116 (724)
Q Consensus 102 ~s~Ts~~vv~~iL~e 116 (724)
=+.|++|.+.-..+.
T Consensus 511 G~~t~~~~l~~~~~~ 525 (558)
T PRK04972 511 GARTCAPAMEIISDT 525 (558)
T ss_pred CCCCCcHHHHHHHhh
Confidence 567888877665544
No 147
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=50.67 E-value=19 Score=30.14 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=27.1
Q ss_pred EEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 047435 551 LVVLFLGGADDREALALVSRMSGHPGLSITVFRI 584 (724)
Q Consensus 551 I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~ 584 (724)
|++++.||+|+..++.++.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44567777773
No 148
>COG4827 Predicted transporter [General function prediction only]
Probab=50.00 E-value=1.2e+02 Score=30.18 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHH--hhhHHHHHHH-HHHHHHHHH
Q 047435 31 TLSTLSGVYFIFIISVKMDTVKILR--AAKHTWFITI-ACLVIPYMI 74 (724)
Q Consensus 31 ~l~~iGl~~~lF~~Gle~d~~~l~~--~~k~~~~i~~-~~~lip~~~ 74 (724)
..-..|+.+.+|..|+++-+..=.. ..|++..|+- .+++++++.
T Consensus 9 l~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~ 55 (239)
T COG4827 9 LTYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFG 55 (239)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3447899999999999988765322 2344555554 444555543
No 149
>PRK09903 putative transporter YfdV; Provisional
Probab=49.99 E-value=1.6e+02 Score=31.54 Aligned_cols=88 Identities=9% Similarity=0.042 Sum_probs=52.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 22 PRREMMVINTLSTLSGVYFIFIISVKMDTVKILRAAKHTWFITIACL-VIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 22 ~~~~~~~l~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~-lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
|..-.+.++.+++...-+-||.+|..+....++.. ++.+...+.-. +.|++. ++....++.. ....-. .+
T Consensus 193 P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~i~-~~~~~~~~l~-----~~~~~v--~v 263 (314)
T PRK09903 193 PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPLAL-LLVGMACHLN-----SEHLQM--MV 263 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHH-HHHHHHcCCC-----cHHHHH--HH
Confidence 44458889999999999999999998876655433 33333333333 346543 3333333221 233344 55
Q ss_pred hhccccHHHHHHHHHhcc
Q 047435 101 LLSMTYFSTVADAVSELK 118 (724)
Q Consensus 101 ~~s~Ts~~vv~~iL~el~ 118 (724)
+++....++.+.++.+.-
T Consensus 264 l~aa~P~a~~~~i~A~~y 281 (314)
T PRK09903 264 LAGALPPAFSGIIIASRF 281 (314)
T ss_pred HHHcccHHHHHHHHHHHH
Confidence 666667777777776533
No 150
>COG0679 Predicted permeases [General function prediction only]
Probab=49.21 E-value=3.4e+02 Score=28.97 Aligned_cols=142 Identities=8% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 217 FALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVL 296 (724)
Q Consensus 217 ~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 296 (724)
+++.-.+.|..+.+......+-.+-+++++..+.+|..++..=.+.+.+.. ..+...+...+..+++=+....+..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL---ADLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhCCChhHH--HHHHHHhhhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 047435 297 FFGTSLRFG--ILFSFILNVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYHKPQTRC 366 (724)
Q Consensus 297 ~~~~~~~~~--~~lg~~m~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~~p~~~~ 366 (724)
..+.+.+++ ...+...+.-|-+.+-++...+. ++......++..+.+........-.+-+..+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G-----~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~ 154 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVALSLFG-----EKGLAYAVIFLIIGLFLMFTLGVILLARSGGGT 154 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHHHHcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
No 151
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=48.59 E-value=1.7e+02 Score=31.29 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 218 ALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKN-FKSFAALETILVGAYVGKLVGSLCTVL 296 (724)
Q Consensus 218 ~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~ 296 (724)
++.+.++|...|.-...+..+. .|.. ..+.+.+.|...|++++...+.. ...|..........++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888887544333332 1222 23446777778899999887754 234444443344444444444444444
Q ss_pred HhCCChhHHHHHHHHh
Q 047435 297 FFGTSLRFGILFSFIL 312 (724)
Q Consensus 297 ~~~~~~~~~~~lg~~m 312 (724)
..+-...+.+..|+..
T Consensus 84 l~~~~~~~~l~~Gl~~ 99 (313)
T PF13593_consen 84 LFPAFLPPELALGLLI 99 (313)
T ss_pred HhhccCCHHHHHHHHH
Confidence 4432223335555543
No 152
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=48.40 E-value=2.9e+02 Score=35.30 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047435 159 SSLCLIGLLFFSFLVVRPAVLLVVNR 184 (724)
Q Consensus 159 ~~~~~~~f~~~~~~v~r~~~~~~~~~ 184 (724)
.+++++.-....+++.|++..++.++
T Consensus 1039 LiIGII~SmftALfVtP~Ll~l~l~~ 1064 (1403)
T PRK12911 1039 LIIGIFSSMFTALFMTKFFFMIWMNK 1064 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444433445556677776666554
No 153
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=47.83 E-value=4.5e+02 Score=29.54 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=30.5
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 047435 106 YFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALM 144 (724)
Q Consensus 106 s~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~ 144 (724)
-+|++....+.+|+.+.+.=-.+++++.+.|..+.++-.
T Consensus 116 lTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lpv 154 (423)
T PF02040_consen 116 LTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPV 154 (423)
T ss_pred hHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccc
Confidence 378888888999975554446789999999999987543
No 154
>PRK09903 putative transporter YfdV; Provisional
Probab=46.71 E-value=3.9e+02 Score=28.47 Aligned_cols=135 Identities=8% Similarity=0.016 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhcCC-CCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 047435 216 SFALGALIVGLIVPA-GPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCT 294 (724)
Q Consensus 216 ~~~lGaFlaGl~~~~-~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 294 (724)
+|.+=|.++|+++.- +-++.+.+.+-++.+ .+-..|+-...+|+.+....+... +. .....+...+.-.+..+..
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~l-g~~~~PlaL~~iG~~L~~~~~~~~--~~-~~~~~~~Kli~~P~i~~~~ 248 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLI-AKANSGVAVFAAGLTLAAHKFEFS--AE-IAYNTFLKLILMPLALLLV 248 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccccc--HH-HHHHHHHHHHHHHHHHHHH
Confidence 355555556664432 224556677777776 578899999999999866544211 11 1122222333334445555
Q ss_pred HHHhCCChhHHHHHHHHh--hhhhhHHHHhhhhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 047435 295 VLFFGTSLRFGILFSFIL--NVKGINEFMLLNRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIYH 360 (724)
Q Consensus 295 ~~~~~~~~~~~~~lg~~m--~~kG~~~l~~~~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~ 360 (724)
...++.+.... ....++ .|-+....+++.. .| .|++.-+..++...+.++++-|+.-++.
T Consensus 249 ~~~~~l~~~~~-~v~vl~aa~P~a~~~~i~A~~----y~-~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 249 GMACHLNSEHL-QMMVLAGALPPAFSGIIIASR----FN-VYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHcCCCcHHH-HHHHHHHcccHHHHHHHHHHH----Hc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667764433 233333 3445444444442 33 2566666666555555667767665553
No 155
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=45.73 E-value=3e+02 Score=32.28 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047435 159 SSLCLIGLLFFSFLVVRPAVLLVVNR 184 (724)
Q Consensus 159 ~~~~~~~f~~~~~~v~r~~~~~~~~~ 184 (724)
..++++.-+...+++.|+++.|+.++
T Consensus 571 L~iGIl~S~ftAi~vtr~l~~~~~~~ 596 (604)
T PRK12933 571 LGLGLLTSMFTGIFASRALINLVYGR 596 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344433445667788888777655
No 156
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=45.73 E-value=46 Score=35.60 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=27.7
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRI 584 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~ 584 (724)
++++.|.||+|+--.|.++.+........+.++++
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~V 73 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHV 73 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEe
Confidence 56889999999999999999886544556677774
No 157
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=44.92 E-value=3.2e+02 Score=27.85 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhccChH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 32 LSTLSGVYFIFIISVKMDTV----KILRAAKHTWFITIACLVIPYMIAMFLSRI 81 (724)
Q Consensus 32 l~~iGl~~~lF~~Gle~d~~----~l~~~~k~~~~i~~~~~lip~~~g~~~~~~ 81 (724)
+-..|+.+-.+..|+|.-+. .+ ++|+...++..-.++.++++.+++.+
T Consensus 4 l~~~GiL~ai~IFgiK~GlglGfs~l--s~k~~~~i~~~Y~~l~~~l~~i~~~~ 55 (224)
T PF09930_consen 4 LWQLGILFAILIFGIKTGLGLGFSNL--SRKEIALIALGYGLLFLLLGYIASPI 55 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666665443 34 35556666666666666666666554
No 158
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=44.26 E-value=1.7e+02 Score=32.02 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhcCCCCCh-----hhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHH
Q 047435 216 SFALGALIVGLIVPAGPPL-----GSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVG 290 (724)
Q Consensus 216 ~~~lGaFlaGl~~~~~~p~-----~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~ 290 (724)
++.+=+.++|+++.-.++. ...+.+-++.+ .+...|+-.+..|..+..........+......++..++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 4444455555554433222 25666666776 57889999999999887554332112223333455666666667
Q ss_pred HHHHHHHhCCChhH
Q 047435 291 SLCTVLFFGTSLRF 304 (724)
Q Consensus 291 ~~l~~~~~~~~~~~ 304 (724)
++...+.++++...
T Consensus 323 ~~~~~~~~~l~~~~ 336 (385)
T PF03547_consen 323 GIGIVFLLGLDGDM 336 (385)
T ss_pred HHHHHHHHCCCHHH
Confidence 77777777765543
No 159
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=43.40 E-value=1.3e+02 Score=29.10 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=30.0
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRI 584 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~ 584 (724)
+|+|.+.||.|+--++.++.+...+.+.+++++++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~i 35 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHV 35 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 58899999999999999999987765677888885
No 160
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=43.05 E-value=2e+02 Score=27.82 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=55.7
Q ss_pred eecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEecChHHHHH
Q 047435 554 LFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIAKNTTEVID 633 (724)
Q Consensus 554 ~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~~~~~ 633 (724)
+..||- ..-.+.+++.|+++-..++.++. . .. .++...++.+++++.. ..+|.|...-+.|.+++.+
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~---r--~~----~~~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~~~v~~ 70 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLG---R--SG----APSAEAEAAIRELESA---GARVEYVQCDVTDPEAVAA 70 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEE---S--SG----GGSTTHHHHHHHHHHT---T-EEEEEE--TTSHHHHHH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEec---c--CC----CccHHHHHHHHHHHhC---CCceeeeccCccCHHHHHH
Confidence 345654 56788999999999888877776 1 10 1122244678888775 4589998888999999999
Q ss_pred HHHhhcCCc---cEEEEcccCC
Q 047435 634 VIRRMDGYY---NLVIVGKKRA 652 (724)
Q Consensus 634 ~i~~~~~~~---dLvivGr~~~ 652 (724)
++.+...++ |-||-++...
T Consensus 71 ~~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 71 ALAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp HHHTSHTTSS-EEEEEE-----
T ss_pred HHHHHHhccCCcceeeeeeeee
Confidence 999887555 6677777653
No 161
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=42.90 E-value=46 Score=33.01 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047435 42 FIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDY 85 (724)
Q Consensus 42 F~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~ 85 (724)
--...|.|.+++||.+..-..--+++.++||++|..+++.|+..
T Consensus 90 vaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 90 VATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567999999999999888777889999999999999999764
No 162
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=40.50 E-value=7.1e+02 Score=29.77 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=59.8
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-+||.-|+||+..-+++++...++++ .+|++--|.+.+..+-. ..+. ++.++.--.|..++
T Consensus 561 PQILLlV~nPrss~~Lirf~N~LKKg-----gLYilGHV~~gd~~~~~--~d~l--------~~q~~~W~s~vd~~---- 621 (945)
T KOG1288|consen 561 PQILLLVSNPRSSCNLIRFCNDLKKG-----GLYILGHVIVGDDFSAS--MDEL--------QQQQRAWLSFVDDA---- 621 (945)
T ss_pred ceEEEEecCCcccchHHHHHHhhccc-----ceEEEEEEEeccccccc--cchh--------hHHHHHHHHHHHHh----
Confidence 36999999999999999999999765 68988777776543211 0100 01111222222222
Q ss_pred CCeEEEEeEEEcCCCChHHHHHHHHHhc-----CCCEEEeccccC
Q 047435 466 VPFTILPYKMIAPYDTMHESICELVKEK-----FIPLVVLPFNKK 505 (724)
Q Consensus 466 ~~v~v~~~~~vs~~~~m~~~I~~~A~e~-----~~~lIIlp~h~~ 505 (724)
.++.|+-+.-..++.++|-++..-- +.+.+|+|||..
T Consensus 622 ---~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 622 ---GIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred ---hhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 2444444444467777777776544 567888888754
No 163
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=37.67 E-value=1.9e+02 Score=32.34 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=66.6
Q ss_pred cchhHHHHHhhcCCCceEEEecCCCCCCCccccCCcceEEEEeecCCcchHHHHHHHHHHh-cCCCeEEEEEEEeecccc
Q 047435 512 NLQNFDMNIQAHAPCTVGLLVDKSSTTGHFYSIGHFTYSLVVLFLGGADDREALALVSRMS-GHPGLSITVFRITVIEDE 590 (724)
Q Consensus 512 ~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma-~~~~~~ltv~r~~~~~~~ 590 (724)
...+++++|+-.+| -+..+-..+ .....+|||.|.||-|----..++.+.. .|+.+.|-=+.|..++..
T Consensus 224 l~ds~k~rvl~i~~----rl~~~i~~~------c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~ 293 (520)
T KOG0573|consen 224 LRDSLKDRVLVIPP----RLCANILLR------CIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGS 293 (520)
T ss_pred HHHHHhhhhhccCh----hHhhhcccc------ccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcc
Confidence 46777888877776 111111110 1113589999999999999888888887 556667666666533212
Q ss_pred ccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEe
Q 047435 591 QSEYDCERHLDEIAINEFITNNISNACVACRQVIA 625 (724)
Q Consensus 591 ~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v 625 (724)
.+.+.++++....-++|++..+. +....+.|.-|
T Consensus 294 ~~~~~PDRktgr~g~~eL~s~~P-~R~~nlV~vnV 327 (520)
T KOG0573|consen 294 KEQNVPDRKTGRRGLEELQSLYP-KRSWNLVEVNV 327 (520)
T ss_pred cccCCccHHHHHHHHHHHHHhCC-cceEEEEeccC
Confidence 11124788888899999988763 44566777655
No 164
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=37.23 E-value=2.7e+02 Score=26.94 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHhhcCCCC---ChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHH
Q 047435 214 GVSFALGALIVGLIVPAGP---PLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNF--KSFAALETILVGAYVGKL 288 (724)
Q Consensus 214 G~~~~lGaFlaGl~~~~~~---p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~--~~~~~~~~ii~~~~~~K~ 288 (724)
.+...-|+++.|+++.... |.. +......+..++.+-+|...+|++.-...+... ..+.. .++-++.++.-.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~-~~~~~~i~~~~~ 98 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKL-LLLGVIITLVPL 98 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHH
Confidence 3344456777777766542 211 344455566788899999999999876544331 13333 333333344445
Q ss_pred HHHHHHHH-HhCCChhHH
Q 047435 289 VGSLCTVL-FFGTSLRFG 305 (724)
Q Consensus 289 ~~~~l~~~-~~~~~~~~~ 305 (724)
+.++..++ ++|+++...
T Consensus 99 ~~~~~~~~~~~~l~~~~~ 116 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPGIA 116 (169)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 55566666 888886654
No 165
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=36.41 E-value=4.5e+02 Score=30.26 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047435 157 AESSLCLIGLLFFSFLVVRPAVLLVVNR 184 (724)
Q Consensus 157 l~~~~~~~~f~~~~~~v~r~~~~~~~~~ 184 (724)
+-.+++++.-....+++.|+++.++.++
T Consensus 461 itl~iGii~s~~~sl~vtp~l~~~~~~~ 488 (498)
T PRK05812 461 VTLGIGILTSMFTAITVTRALVNLLYGR 488 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444445667888888766654
No 166
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=35.62 E-value=3e+02 Score=24.80 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=53.2
Q ss_pred cEEEEEEEeeecCCCccccccchhhhh--hcccccchHHHHHHHHHhhhcCCCCeEEEEeEEEcCCCChHHHHHHHHHhc
Q 047435 416 MCVYLVHLIELVGRASPVLAPYNAQKL--RLIREDSTYRIMHAAEKQFRSSDVPFTILPYKMIAPYDTMHESICELVKEK 493 (724)
Q Consensus 416 ~~v~~lhlvel~~r~~p~~~~~~~~~~--~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~ 493 (724)
-.|.-+|++|.++- .+-+..++---. ........+...+-+++..+.....+-++.- -....+.+++.+.|++.
T Consensus 23 r~V~~v~v~e~~d~-~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~---~~~~~iP~~~i~~A~~~ 98 (123)
T PF07905_consen 23 RPVRWVHVMEAPDP-SDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTG---RYLDEIPEEIIELADEL 98 (123)
T ss_pred CcEEEEEEeecCCH-HHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEecc---CccccCCHHHHHHHHHc
Confidence 46777888887732 222222221000 0011112223445555555443344444433 12368899999999999
Q ss_pred CCCEEEeccccCCCCCcccchhHHHHHhh
Q 047435 494 FIPLVVLPFNKKRQGRTTNLQNFDMNIQA 522 (724)
Q Consensus 494 ~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~ 522 (724)
+..++.+||+-+ |.++.+.|.+
T Consensus 99 ~lPli~ip~~~~-------f~~I~~~v~~ 120 (123)
T PF07905_consen 99 GLPLIEIPWEVP-------FSDITREVMR 120 (123)
T ss_pred CCCEEEeCCCCC-------HHHHHHHHHH
Confidence 999999999643 5555555543
No 167
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=34.70 E-value=1e+02 Score=28.60 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHhcCCCEEEeccccCCCCCc----ccchhHHHHHhhcC-CCceEEEecCC
Q 047435 480 DTMHESICELVKEKFIPLVVLPFNKKRQGRT----TNLQNFDMNIQAHA-PCTVGLLVDKS 535 (724)
Q Consensus 480 ~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~----~~~~~~~~~Vl~~A-pCsVgilVdrg 535 (724)
....+.+.++++|++++.||+|...+..|+. ...+.+.+++-++. +++| .++|-.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr 96 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPV-ILVDER 96 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCC
Confidence 6889999999999999999999977665333 15678888888876 8887 466654
No 168
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=34.21 E-value=1.1e+02 Score=32.64 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc-CCccEEEEcccCCCCchhhhccccccCCcccchhh
Q 047435 601 DEIAINEFITNNISNACVACRQVIAKNTTEVIDVIRRMD-GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIG 674 (724)
Q Consensus 601 d~~~i~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~-~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~ig 674 (724)
-++..+.+++.. .++.+.......|..+..+++. ++||++|++-+-|.-+.+..||-+=-..| ||.||
T Consensus 22 ~~~~~~~l~~~g-----~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-LgilP 90 (301)
T COG1597 22 LREVEELLEEAG-----HELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGILP 90 (301)
T ss_pred HHHHHHHHHhcC-----CeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEec
Confidence 334444444432 2333433333345666666655 45999999999999899999998754455 88876
No 169
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.53 E-value=1.9e+02 Score=23.64 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHH
Q 047435 158 ESSLCLIGLLFFSFLVVRPAVLLVVNRTPEGKPVKEGYVIG 198 (724)
Q Consensus 158 ~~~~~~~~f~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~~ 198 (724)
+.++++++.++..+|+.|..+..-++.+|. ..|-.+..
T Consensus 9 ~ivl~ll~G~~~G~fiark~~~k~lk~NPp---ine~~iR~ 46 (71)
T COG3763 9 LIVLALLAGLIGGFFIARKQMKKQLKDNPP---INEEMIRM 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCHHHHHH
Confidence 344455555666788999999888888874 45544433
No 170
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=33.46 E-value=1.8e+02 Score=27.06 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=24.4
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEE
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFR 583 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r 583 (724)
+|++.|.||+|.--.|.++.+...+. -.+.+++
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~ 33 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIF 33 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEE
Confidence 47889999999999888887765542 3455555
No 171
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=33.14 E-value=6.3e+02 Score=26.99 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=55.4
Q ss_pred hhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhc
Q 047435 247 SNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRL 326 (724)
Q Consensus 247 ~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~ 326 (724)
..+++=.|++.++.-.|+..+...+.|. +..+...+...+..+..++.++.+..+-. ++.+-|..|-.+.-+...+
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~taP~~i---~~gf~il~~h~~v~f~~~KlF~~dL~~i~-~AslAniGG~~sAp~~A~A 350 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTAPLII---LFGFIILISHLAVSFAAGKLFRVDLEEIL-LASLANIGGPTSAPAMAIA 350 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhccCCccchhHHHhh
Confidence 3567778899999999999886543333 22333334466677778899988876654 4445677777777777766
Q ss_pred cccccCCCh
Q 047435 327 RVNFKTIDE 335 (724)
Q Consensus 327 ~~~~~~i~~ 335 (724)
++ ...+.+
T Consensus 351 ~n-r~lv~~ 358 (384)
T COG5505 351 KN-RELVAP 358 (384)
T ss_pred cC-chhcch
Confidence 66 544443
No 172
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=32.99 E-value=1.3e+02 Score=30.71 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=48.2
Q ss_pred EEEeEEEcCCC-ChHHHHHHHHHhcCCCEEEeccccCCCCCc-ccchhHHHHHhhcCCCceEEEecC
Q 047435 470 ILPYKMIAPYD-TMHESICELVKEKFIPLVVLPFNKKRQGRT-TNLQNFDMNIQAHAPCTVGLLVDK 534 (724)
Q Consensus 470 v~~~~~vs~~~-~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~-~~~~~~~~~Vl~~ApCsVgilVdr 534 (724)
..++|-++|.+ ...++|.+.+.+-++|.|++|=.- |.. +...++..++-++..-+|-++...
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~---gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSD---GVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcc---cccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 56889999999 999999999999999999999321 111 147788888887888887666433
No 173
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=31.89 E-value=7.2e+02 Score=27.28 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhH
Q 047435 196 VIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSF 273 (724)
Q Consensus 196 ~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~ 273 (724)
+.+-+....+++.+. =.-.+.+|.+.+|-.+.+.. . +++.+-.+.-......-+.-..+|...+-..+.+++++
T Consensus 233 ilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 233 FVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred hHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 444444444444442 22357899999999999874 2 55555444443333334445678888887777665444
No 174
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=31.25 E-value=1.5e+02 Score=31.79 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=20.8
Q ss_pred ceEEEEeecC-CcchHHHHHHHHHHhcCCCeEEEEEE
Q 047435 548 TYSLVVLFLG-GADDREALALVSRMSGHPGLSITVFR 583 (724)
Q Consensus 548 ~~~I~v~f~G-G~ddreAL~~a~rma~~~~~~ltv~r 583 (724)
.++|+|+... |+--+.-+..+.+ +.|.+.++++.
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~--r~~~~~~~~~p 48 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKR--RNPIVEIILYP 48 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHH--hCCCcEEEEEe
Confidence 4577776665 4444555665666 66666666665
No 175
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=30.49 E-value=2e+02 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.416 Sum_probs=29.5
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCC--CeEEEEEEEe
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHP--GLSITVFRIT 585 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~--~~~ltv~r~~ 585 (724)
+|+|.+.||+|.--.+.++.+..++- +.+++.+++-
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 58999999999999999998877654 6777777753
No 176
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=29.89 E-value=2.3e+02 Score=29.93 Aligned_cols=107 Identities=11% Similarity=0.107 Sum_probs=66.5
Q ss_pred eEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC--CCcccchhHHHHHhhcCCCceEEEecCCCCCCCccccC
Q 047435 468 FTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ--GRTTNLQNFDMNIQAHAPCTVGLLVDKSSTTGHFYSIG 545 (724)
Q Consensus 468 v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~--g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~~~~ 545 (724)
..|-.|.... ..+.+.|++.|+|.+...||--..+... |. +.+........++++++|++=-|+|.....-....
T Consensus 18 yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~-~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al 94 (281)
T PRK06806 18 YGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSPL-HLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEAL 94 (281)
T ss_pred ceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCCh-HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 3455565555 7889999999999999999977654432 21 25677888889999999998889985310000001
Q ss_pred CcceEEEEeecC-CcchHHHHHHHHHH---hcCCCeE
Q 047435 546 HFTYSLVVLFLG-GADDREALALVSRM---SGHPGLS 578 (724)
Q Consensus 546 ~~~~~I~v~f~G-G~ddreAL~~a~rm---a~~~~~~ 578 (724)
+......+ +-+ ..+++|-++.++++ |+.-++.
T Consensus 95 ~~G~tsVm-~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 95 EIGFTSVM-FDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred HcCCCEEE-EcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 11122222 222 24677877776555 4555544
No 177
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=29.72 E-value=7.3e+02 Score=26.69 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=64.6
Q ss_pred hhhhHHHHHHhccccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHh---hhhhhHHHHhh
Q 047435 248 NILLPFFYLRIGLLTNVHSIKN-FKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFIL---NVKGINEFMLL 323 (724)
Q Consensus 248 ~~flPlFF~~~G~~~d~~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m---~~kG~~~l~~~ 323 (724)
..++-+.|...|+.+...++.. ...|....+.++..++.=.+.++..++.+++| ..+..|+++ +|-|..+.++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHHHHH
Confidence 4555666777899998877643 33566666667777777778888888888754 456667665 57777776666
Q ss_pred hhccccccCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 047435 324 NRLRVNFKTIDEASYATMVLSHLAVNAIVTPIICIY 359 (724)
Q Consensus 324 ~~~~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l 359 (724)
..+.- -..- .-....++.+++-+++|.++..+
T Consensus 119 ~lAkG---nVal-sV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 119 YLAKG---NVAL-SVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred HHhcC---cHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66543 2211 12223344555444444445553
No 178
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=27.13 E-value=99 Score=28.44 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=28.4
Q ss_pred EEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCC
Q 047435 470 ILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKR 506 (724)
Q Consensus 470 v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~ 506 (724)
..-..++-|...||..|.++|++-++|++|-|.....
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 4567778888999999999999999999999997654
No 179
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=27.13 E-value=4.3e+02 Score=28.46 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=63.3
Q ss_pred HHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhccccc
Q 047435 253 FFYLRIGLLTNVHSIKNF--KSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNF 330 (724)
Q Consensus 253 lFF~~~G~~~d~~~l~~~--~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~ 330 (724)
.....+|++=-...-.+. ..+..+...+++.++.-+++..+..++.|++..|+..++..-..-+.+.++.+...++ .
T Consensus 32 yLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~-~ 110 (327)
T PF05982_consen 32 YLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLE-S 110 (327)
T ss_pred HHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHH-H
Confidence 334566766433211111 1223334445555555556656666668999999999998888888888888888888 6
Q ss_pred cCCChhhHHHHHHHHHHH-HHHHHHHHHHhc
Q 047435 331 KTIDEASYATMVLSHLAV-NAIVTPIICIYH 360 (724)
Q Consensus 331 ~~i~~~~~~~lv~~~ll~-t~i~~~l~~~l~ 360 (724)
.-+..|-|...++..+=+ .++...++.+++
T Consensus 111 ~gi~yeg~m~a~~alME~PAIival~L~~~~ 141 (327)
T PF05982_consen 111 QGISYEGYMVALLALMESPAIIVALLLARLF 141 (327)
T ss_pred CCCCccccHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666666555443332221 344455554443
No 180
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=26.71 E-value=6.2e+02 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 047435 276 LETILVGAYVGKLVGSLCTVLFFG 299 (724)
Q Consensus 276 ~~~ii~~~~~~K~~~~~l~~~~~~ 299 (724)
..+.++...++=++|+++..+..|
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777888888887764
No 181
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=26.65 E-value=6e+02 Score=27.20 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 047435 247 SNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGT 300 (724)
Q Consensus 247 ~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 300 (724)
...++-+|++.+|.++|+..... .+.....+++.-++.-.+..++..+++|.
T Consensus 47 ~~~iig~~l~~~Ga~I~~k~~~~--~lkkg~~ll~~K~~~~~~lgl~~~~~fg~ 98 (314)
T PF03812_consen 47 ANPIIGVFLFCMGAQIDLKSAGK--VLKKGGVLLLVKFIIGALLGLLVGKFFGP 98 (314)
T ss_pred hHHHHHHHHHHhccccchhhhhH--HHHhhhHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45677899999999999987643 23333333333344444444555555553
No 182
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.29 E-value=1.1e+02 Score=34.31 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=31.3
Q ss_pred HHHHHHHhhccCCCceEEEEEEe---cChHHHHHHHHhhc--CCccEEEEcccCC
Q 047435 603 IAINEFITNNISNACVACRQVIA---KNTTEVIDVIRRMD--GYYNLVIVGKKRA 652 (724)
Q Consensus 603 ~~i~~~~~~~~~~~~v~y~e~~v---~~~~~~~~~i~~~~--~~~dLvivGr~~~ 652 (724)
+.++..+.+.. ..+|.+-...| +.+.|++++|+..+ +++|++||||+.|
T Consensus 151 DIl~~~~rR~P-~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 151 DILHTLSRRFP-SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHHHhhCC-CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 45555555543 23444333333 23578888888775 4589999999987
No 183
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=25.71 E-value=6.5e+02 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047435 156 KAESSLCLIGLLFFSFLVVRPAVLLVVNR 184 (724)
Q Consensus 156 ~l~~~~~~~~f~~~~~~v~r~~~~~~~~~ 184 (724)
++-.+++.+.-....+++.+|+..|+.++
T Consensus 161 a~~l~iGvi~~~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 161 ALTLIIGVIIGTYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344444444455678888888887653
No 184
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=25.70 E-value=7.1e+02 Score=30.39 Aligned_cols=63 Identities=16% Similarity=0.019 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhccChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhcc
Q 047435 35 LSGVYFIFIISVKMDTVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLSM 104 (724)
Q Consensus 35 iGl~~~lF~~Gle~d~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s~ 104 (724)
+-+-++....|++.|...+.+ ..............-++.+.+.+.+..-.+ ..++.+ |.+++.
T Consensus 314 ~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~----~~~l~l--~~lm~~ 376 (769)
T KOG1650|consen 314 LLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPL----RDSLAL--GLLMST 376 (769)
T ss_pred HHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCch----hHHHHH--HHHHHh
Confidence 344467778899999999988 222222222222233334444444333222 556666 655553
No 185
>COG3748 Predicted membrane protein [Function unknown]
Probab=25.44 E-value=6.7e+02 Score=26.93 Aligned_cols=40 Identities=5% Similarity=0.094 Sum_probs=24.7
Q ss_pred hhhhhHHHHHHhcccccccccccchhHHHHHHHHHHHHHHH
Q 047435 247 SNILLPFFYLRIGLLTNVHSIKNFKSFAALETILVGAYVGK 287 (724)
Q Consensus 247 ~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K 287 (724)
+-+-+|..|+...=+..+. +....+|.+..++.+.+...|
T Consensus 226 nylTLPVlF~MlSNHyp~~-~gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLA-FGTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCccc-ccCchhHHHHHHHHHHHHHHH
Confidence 5678999999876665543 333447766555555554443
No 186
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=25.35 E-value=6.3e+02 Score=24.49 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHhcccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChhHHHHHHHH-hhhhhhHHHHhhhhc
Q 047435 255 YLRIGLLTNVHSIKNF-KSFAALETILVGAYVGKLVGSLCTV-LFFGTSLRFGILFSFI-LNVKGINEFMLLNRL 326 (724)
Q Consensus 255 F~~~G~~~d~~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~-~~~~~~~~~~~~lg~~-m~~kG~~~l~~~~~~ 326 (724)
....|+++|+.++... +....+..-.+.-++...+.++..+ ++++.+...+..+-+. .+|-|.........+
T Consensus 8 mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~ 82 (187)
T PF01758_consen 8 MFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLA 82 (187)
T ss_dssp HHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHT
T ss_pred HHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 3466788888777542 1222333344455666777777777 6666555433322222 245555555544443
No 187
>COG2431 Predicted membrane protein [Function unknown]
Probab=25.33 E-value=2.5e+02 Score=29.45 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccC-----hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 30 NTLSTLSGVYFIFIISVKMD-----TVKILRAAKHTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d-----~~~l~~~~k~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
+...+..+.+++|.+|.++- .+..+=+ |+....++...+-..+-|.+.+.++.... ...+.+ +.
T Consensus 131 ~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~~i~ilssliGG~iaa~~l~lpl----~~~lAm--as 199 (297)
T COG2431 131 ENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILAFITLLSSLIGGLIAAFLLDLPL----TTGLAM--AS 199 (297)
T ss_pred hhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHH--Hh
No 188
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=25.29 E-value=7e+02 Score=25.96 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCCC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSDV 466 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 466 (724)
+|++++++-.+...++.++...... ..+.++|+ .| .-...++.-.+..+.+++....
T Consensus 23 ~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~V------------d~-------~~~~~~~~~~~~~~~~~~~~~~ 79 (298)
T COG0037 23 KILVAVSGGKDSLALLHLLKELGRR----IEVEAVHV------------DH-------GLRGYSDQEAELVEKLCEKLGI 79 (298)
T ss_pred eEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEe------------cC-------CCCCccchHHHHHHHHHHHhCC
Q ss_pred CeEEEEeEEEcCCCCh-------------HHHHHHHHHhcCCCEEEeccccC
Q 047435 467 PFTILPYKMIAPYDTM-------------HESICELVKEKFIPLVVLPFNKK 505 (724)
Q Consensus 467 ~v~v~~~~~vs~~~~m-------------~~~I~~~A~e~~~~lIIlp~h~~ 505 (724)
...+..++.......+ .+-..+.|++.+++.|+.|-|..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 80 PLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred ceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcH
No 189
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=24.41 E-value=6.8e+02 Score=24.52 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHhhcCCCCChhhHHHHHHhh-----
Q 047435 172 LVVRPAVLLVVNRTPEGKPVKEGYVIGLMILPIAMGALTD--MLGVSFALGALIVGLIVPAGPPLGSALVEKCDF----- 244 (724)
Q Consensus 172 ~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~--~~G~~~~lGaFlaGl~~~~~~p~~~~l~ekl~~----- 244 (724)
.+..|+.-.+..|.|+. ...++..+...+......+ ..-...+++++++=++...+ .+.+.-...+-.
T Consensus 42 li~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g-~y~~~~~~~iay~vf~~ 116 (186)
T PF09605_consen 42 LICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKG-GYKSKKRNTIAYAVFSL 116 (186)
T ss_pred HHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHH
Confidence 34455555667777641 2222222222222222222 22334466667776677555 333332222211
Q ss_pred hhhhhhhHHHHHHhccc---------ccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 047435 245 VISNILLPFFYLRIGLL---------TNV-HSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFG 299 (724)
Q Consensus 245 ~~~~~flPlFF~~~G~~---------~d~-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 299 (724)
...+-++|++|..-... -+. ..+.+..+.+..+++++..+++=++|++++.+..|
T Consensus 117 ~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 117 GYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11267788887644333 111 11111111233456666777778888888877664
No 190
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.26 E-value=1.7e+02 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC-cchhHHHHHhhhhhc
Q 047435 67 CLVIPYMIAMFLSRILSDYTPG-VERGLFRLYFTSLLS 103 (724)
Q Consensus 67 ~~lip~~~g~~~~~~l~~~~~~-~~~~~l~l~~~~~~s 103 (724)
++++|.++|.+++.++-..+++ +.....++++|++.+
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 4567888888888888765542 222333333455544
No 191
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=23.80 E-value=6.9e+02 Score=26.22 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=53.7
Q ss_pred hHHHHHHhcccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHh---hhhhhHHHHhhhhc
Q 047435 251 LPFFYLRIGLLTNVHSIKNF-KSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILFSFIL---NVKGINEFMLLNRL 326 (724)
Q Consensus 251 lPlFF~~~G~~~d~~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m---~~kG~~~l~~~~~~ 326 (724)
+.+-+...|+.++..++... ..+.......+.-++.-.+.++..++.++.+.. ...|+.+ .|-|....+.....
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~--~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPE--LAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHheeeCCCchHHHHHHHHh
Confidence 44445678888888777531 112233344445566666677777777776544 3444443 45555555544443
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 047435 327 RVNFKTIDEASYATMVLSHLAVNAIVTPIICIYH 360 (724)
Q Consensus 327 ~~~~~~i~~~~~~~lv~~~ll~t~i~~~l~~~l~ 360 (724)
.. |.+.-..++....+.+.++.|+.-.++
T Consensus 92 ~g-----n~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 KG-----DMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred CC-----CHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 333333333333333555556555544
No 192
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=23.65 E-value=4.9e+02 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEe
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLI 424 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlv 424 (724)
||++++++-.+.-.|+.++...... .+..+.++|+=
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~--~~~~~~~~~vd 36 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRR--NGIKLIAVHVD 36 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTT--TTTEEEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh--cCCCeEEEEEe
Confidence 6899999888888888888888765 45688888883
No 193
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=23.36 E-value=1.4e+02 Score=32.51 Aligned_cols=115 Identities=6% Similarity=-0.016 Sum_probs=68.4
Q ss_pred CChhhHHHHHHhhhhhhhhhHHH-HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH-H
Q 047435 232 PPLGSALVEKCDFVISNILLPFF-YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFFGTSLRFGILF-S 309 (724)
Q Consensus 232 ~p~~~~l~ekl~~~~~~~flPlF-F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l-g 309 (724)
|+-++++.+++ +..+|.|.. |.-.|=.+++..+.+ ||++.+-+.+.++.-.+..++..++++-|.+..-++ +
T Consensus 39 p~dark~ln~L---vf~lFtPcLiFs~La~svtl~~ii~---~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia 112 (408)
T KOG2722|consen 39 PRDARKLLNKL---VFYLFTPCLIFSKLAQSVTLEKIIQ---WWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIA 112 (408)
T ss_pred CHHHHHHhhhe---eeeeecHHHHHHHHhhhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEE
Confidence 34455655554 457899976 678888888877764 566777777777777788899999999887754221 1
Q ss_pred H-HhhhhhhHHHH-hhhhccccccCCCh---hhHHHHHHHHHHHHHHHH
Q 047435 310 F-ILNVKGINEFM-LLNRLRVNFKTIDE---ASYATMVLSHLAVNAIVT 353 (724)
Q Consensus 310 ~-~m~~kG~~~l~-~~~~~~~~~~~i~~---~~~~~lv~~~ll~t~i~~ 353 (724)
. ..+.-|...++ +..+..+ .+.... ..-+--+.++.+...++.
T Consensus 113 ~~a~GN~gnlpL~Lv~alc~~-~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~ 160 (408)
T KOG2722|consen 113 CCAFGNSGNLPLILVPALCDE-DGIPFGNREKCASRGISYVSFSQQLGQ 160 (408)
T ss_pred EeecCCcCCcHHHHhHHHhcc-cCCCCCChhhhhhcchhHHHHHHHhhh
Confidence 0 01223444444 3344445 555432 333334445555444433
No 194
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.36 E-value=2.6e+02 Score=29.54 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=50.8
Q ss_pred EEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC--CCcccchhHHHHHhhcCCCceEEEecCCCC
Q 047435 469 TILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ--GRTTNLQNFDMNIQAHAPCTVGLLVDKSST 537 (724)
Q Consensus 469 ~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~--g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~ 537 (724)
.|-.|.... ..+.+.|++.|+|.++..||--...... |. +.+....+...++++++|++=-|+|..
T Consensus 19 aV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~-~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 19 AVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAGT-DYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred eEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCH-HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 345555555 6889999999999999999976544332 32 257788889999999999998899864
No 195
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.72 E-value=53 Score=22.51 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=10.8
Q ss_pred cHHHHHHHHhhc
Q 047435 712 PKKVMEKFVQMH 723 (724)
Q Consensus 712 ~~~~~~~~~~~~ 723 (724)
+|.+||+|++.|
T Consensus 6 AR~IyeR~v~~h 17 (32)
T PF02184_consen 6 ARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHhC
Confidence 688999999988
No 196
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=22.51 E-value=6e+02 Score=28.62 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=40.5
Q ss_pred eEEEEeecCCcchHHHHHHHHHHh-cCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhc
Q 047435 549 YSLVVLFLGGADDREALALVSRMS-GHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNN 612 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma-~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~ 612 (724)
.+|+|-+.||+|.--.|.+..++. ..++..++++|+-.... .+.+.+.++.+++-++.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr------~~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS------PNADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC------cchHHHHHHHHHHHHHc
Confidence 589999999999988888887776 45678999999632211 11222446677776664
No 197
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=22.47 E-value=4.5e+02 Score=25.31 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=48.3
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEE-Ee--cChHHHHHH
Q 047435 558 GADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQV-IA--KNTTEVIDV 634 (724)
Q Consensus 558 G~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~-~v--~~~~~~~~~ 634 (724)
.|.|.|+++.|++|++ .+..++++-+-+. . ++..+++.... .-+++.+.+- .. .+.+...++
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~--------~----~~~~~~~~~~~--Gad~v~~~~~~~~~~~~~~~~a~~ 82 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVIGPP--------A----AEVALREALAM--GADKVLLVEDPALAGYDPEATAKA 82 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEECCh--------H----HHHHHHHHHHh--CCCEEEEEecCcccCCChHHHHHH
Confidence 3788999999999987 4456666664321 1 11112222221 1234433221 11 123333444
Q ss_pred HHhh--cCCccEEEEcccCCC--Cchhhhccccc
Q 047435 635 IRRM--DGYYNLVIVGKKRAV--TSRLEEEMKLW 664 (724)
Q Consensus 635 i~~~--~~~~dLvivGr~~~~--~s~~~~gl~~W 664 (724)
+.+. +.++|++++|.+... -.|.+....+|
T Consensus 83 l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~ 116 (181)
T cd01985 83 LAALIKKEKPDLILAGATSIGKQLAPRVAALLGV 116 (181)
T ss_pred HHHHHHHhCCCEEEECCcccccCHHHHHHHHhCC
Confidence 4443 246999999999642 24555555555
No 198
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=21.88 E-value=6.9e+02 Score=25.31 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=21.8
Q ss_pred eEEEEeecCCcchHHHHHHHHHHh
Q 047435 549 YSLVVLFLGGADDREALALVSRMS 572 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma 572 (724)
.++++.|.||+|+--.|.++.+..
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~ 49 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS 49 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh
Confidence 479999999999999999999976
No 199
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=21.67 E-value=78 Score=27.86 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHhcCCCEEEeccc
Q 047435 480 DTMHESICELVKEKFIPLVVLPFN 503 (724)
Q Consensus 480 ~~m~~~I~~~A~e~~~~lIIlp~h 503 (724)
.+=+++|++.|+++++|++|+|-.
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSH
T ss_pred CCCHHHHHHHHHHcCCCEEEECCh
Confidence 455899999999999999999964
No 200
>PRK04148 hypothetical protein; Provisional
Probab=21.37 E-value=1.3e+02 Score=28.02 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=31.1
Q ss_pred EeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC
Q 047435 472 PYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ 507 (724)
Q Consensus 472 ~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~ 507 (724)
-..++-|..+|+..|.++|++-++|++|-|......
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 456667889999999999999999999999976643
No 201
>PRK07102 short chain dehydrogenase; Provisional
Probab=20.89 E-value=5.1e+02 Score=25.82 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHh
Q 047435 558 GADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIAKNTTEVIDVIRR 637 (724)
Q Consensus 558 G~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~ 637 (724)
|....-..+++++++++ +.+++++. . + .+ . .++..++.+... ..++.+.+--+.|.+++.+.+.+
T Consensus 8 Gas~giG~~~a~~l~~~-G~~Vi~~~---r--~-----~~-~-~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 8 GATSDIARACARRYAAA-GARLYLAA---R--D-----VE-R-LERLADDLRARG--AVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred cCCcHHHHHHHHHHHhc-CCEEEEEe---C--C-----HH-H-HHHHHHHHHHhc--CCeEEEEecCCCChHHHHHHHHH
Confidence 34457778888899876 55554443 1 1 11 1 112334443321 34677766667888888888887
Q ss_pred hcCCccEEEEcccC
Q 047435 638 MDGYYNLVIVGKKR 651 (724)
Q Consensus 638 ~~~~~dLvivGr~~ 651 (724)
...+.|.+|..++.
T Consensus 73 ~~~~~d~vv~~ag~ 86 (243)
T PRK07102 73 LPALPDIVLIAVGT 86 (243)
T ss_pred HhhcCCEEEECCcC
Confidence 76678999977653
No 202
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=20.79 E-value=68 Score=31.37 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=32.0
Q ss_pred hhccccccCCcccchhhhhhhcCCCCCCcccEEEEEeccCCCCchhhhhHhhhccH
Q 047435 658 EEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQCGIGSVTISEANKIIMQYPK 713 (724)
Q Consensus 658 ~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvqq~~~~~~~~~~~~~~~~~~~ 713 (724)
..||.+|+..|+ .++.+...-| =+|+|=|+...+...+-.++++|.+
T Consensus 79 IT~L~dW~~~~~--~L~~L~~~VD-------E~VlQ~yqGl~d~~~~~~yl~~l~~ 125 (181)
T PF11340_consen 79 ITALPDWLSSPD--WLNALPGVVD-------ELVLQVYQGLFDPPNYARYLPRLAR 125 (181)
T ss_pred eEEehhhhcCch--hhhhHhhcCC-------eeEEEeecCCCCHHHHHHHHHHHhc
Confidence 357999999988 5666665432 2456666777777777777777654
No 203
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=20.68 E-value=2.3e+02 Score=26.39 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhcCCCEEEeccccCCCCCc----ccchhHHHHHhhcCCCceEEEecCC
Q 047435 482 MHESICELVKEKFIPLVVLPFNKKRQGRT----TNLQNFDMNIQAHAPCTVGLLVDKS 535 (724)
Q Consensus 482 m~~~I~~~A~e~~~~lIIlp~h~~~~g~~----~~~~~~~~~Vl~~ApCsVgilVdrg 535 (724)
..+.|.++++|++++.||+|...+..|+. ...+.+.+++-++-+++| .++|-.
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr 98 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPV-VLVDER 98 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 47889999999999999999877654443 156778888777767887 466543
No 204
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.68 E-value=5.3e+02 Score=33.26 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=4.1
Q ss_pred chHHHHHH
Q 047435 560 DDREALAL 567 (724)
Q Consensus 560 ddreAL~~ 567 (724)
--||-..|
T Consensus 616 trre~as~ 623 (1355)
T PRK10263 616 TRRELASY 623 (1355)
T ss_pred cHHHHHhh
Confidence 34555555
No 205
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.61 E-value=3.4e+02 Score=28.22 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=13.7
Q ss_pred HHHHHHhhcCCccEEEEcccCCC
Q 047435 631 VIDVIRRMDGYYNLVIVGKKRAV 653 (724)
Q Consensus 631 ~~~~i~~~~~~~dLvivGr~~~~ 653 (724)
+-.++++.. .|.+++|.||..
T Consensus 132 l~~al~~~~--~~a~~~G~Rrde 152 (261)
T COG0175 132 LKRALDEYG--FDAWFTGLRRDE 152 (261)
T ss_pred HHHHHhhcC--CceEEEeccccc
Confidence 444444322 289999999874
No 206
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=20.46 E-value=1.2e+03 Score=25.99 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccchhHHHHHHH
Q 047435 200 MILPIAMGALTDMLGVSFALGALIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNFKSFAALETI 279 (724)
Q Consensus 200 l~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~~~~~~~~~i 279 (724)
+.+.+.+++++....-..++|++++-+++.-. +.| --.-.|+|+...| +..-..+.+. + .-++.
T Consensus 196 isLGl~~~ai~~ll~~~~~~as~~F~LAlnyK---------QMe---LY~A~pfF~fLLg-~c~k~k~~~~--f-~ri~~ 259 (510)
T KOG2575|consen 196 ISLGLTLYAIAALLKNFYVLASVLFVLALNYK---------QME---LYHALPFFAFLLG-SCLKPKLFNS--F-ARIIK 259 (510)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH---------HHH---HHhchHHHHHHHH-HHhcccchHH--H-HHHHH
Confidence 34455667777788888999999999987643 112 1345677777888 5444444321 2 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhhhhhHHHHhhhhcccccc-------CCChhhHHHHHHHHHHHHHHH
Q 047435 280 LVGAYVGKLVGSLCTVLFFGTSLRFGILFSFILNVKGINEFMLLNRLRVNFK-------TIDEASYATMVLSHLAVNAIV 352 (724)
Q Consensus 280 i~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l~~~~~~~~~~~-------~i~~~~~~~lv~~~ll~t~i~ 352 (724)
+.++.++-++.++++-...+-...+-+- =+.=-.||.+|=-+++++-. .. +...+....+.+...+. ...
T Consensus 260 ia~~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt-~n~~~K~k~~ft~q~~~~iSl~~Tli-~~L 336 (510)
T KOG2575|consen 260 IALAVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCT-FNVFLKIKELFTQQQLQVISLAATLI-GSL 336 (510)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhh-hhhhhhhhhhhhHHHHHHHHHHHHHH-HHh
Confidence 4445556677777776666533333221 11124789999888888864 32 44444444444443332 234
Q ss_pred HHHHHHhcCcccccc
Q 047435 353 TPIICIYHKPQTRCK 367 (724)
Q Consensus 353 ~~l~~~l~~p~~~~~ 367 (724)
|..+..+.+|+++.-
T Consensus 337 Ps~v~l~L~P~~~~f 351 (510)
T KOG2575|consen 337 PSMVVLFLRPTNKGF 351 (510)
T ss_pred HHHHHHhhcccccch
Confidence 666777777887754
No 207
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.40 E-value=2.9e+02 Score=29.20 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=50.2
Q ss_pred EEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC--CCcccchhHHHHHhhcCCCceEEEecCCCC
Q 047435 470 ILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ--GRTTNLQNFDMNIQAHAPCTVGLLVDKSST 537 (724)
Q Consensus 470 v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~--g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~ 537 (724)
|-.+...+ ..+...+++.|+|.+...||--...... |. +.+........++++++|++=-|+|..
T Consensus 20 V~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~-~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 20 VGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGI-EYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred EEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCCH-HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 44555555 6889999999999999999977654432 32 257778888999999999998899863
No 208
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=20.22 E-value=1e+03 Score=25.63 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=17.3
Q ss_pred HHHHHHHHh---hcCCCCChhhHHHHHH
Q 047435 218 ALGALIVGL---IVPAGPPLGSALVEKC 242 (724)
Q Consensus 218 ~lGaFlaGl---~~~~~~p~~~~l~ekl 242 (724)
++|+|..|+ ..|-+.|+++-...|+
T Consensus 145 ViaCFsIGlGAaLTPiGEPLSTIaVSKL 172 (347)
T PF07854_consen 145 VIACFSIGLGAALTPIGEPLSTIAVSKL 172 (347)
T ss_pred ehhHHHHhcCccccCCCCCcHHHHHHHH
Confidence 677777765 3556677777777776
No 209
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=20.11 E-value=2e+02 Score=26.01 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCC---cccchhhh
Q 047435 629 TEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEY---EELGVIGD 675 (724)
Q Consensus 629 ~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~---~eLG~igd 675 (724)
++..+..++. .+||.+++..+-|.-+.+..|+.+.... |.+|+||-
T Consensus 38 ~~~~~~~~~~-~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 38 AAALVIFRDL-PKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred HHHHHHHhhc-CcCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 3344445554 4688888888888778888888755322 56787764
No 210
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=20.06 E-value=2.4e+02 Score=26.55 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=21.2
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCC
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHP 575 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~ 575 (724)
++++-|.||+|..-.|.++.+...+-
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~ 26 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV 26 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999988773
Done!