Query 047435
Match_columns 724
No_of_seqs 268 out of 1880
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 2.7E-25 9.3E-30 238.3 11.2 303 27-361 58-385 (388)
2 3mt0_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 160.2 22.4 255 386-696 8-278 (290)
3 3olq_A Universal stress protei 99.7 2.6E-15 9.1E-20 159.5 20.7 277 386-697 8-308 (319)
4 3loq_A Universal stress protei 99.7 6.2E-16 2.1E-20 162.7 14.5 266 386-696 23-292 (294)
5 3cis_A Uncharacterized protein 99.6 3.9E-15 1.3E-19 157.8 18.1 276 385-694 19-306 (309)
6 3ab8_A Putative uncharacterize 99.6 1.3E-14 4.4E-19 150.3 17.8 256 387-693 2-268 (268)
7 3s3t_A Nucleotide-binding prot 99.0 1.2E-09 4.2E-14 101.5 10.4 137 386-531 6-145 (146)
8 1mjh_A Protein (ATP-binding do 99.0 5.3E-09 1.8E-13 99.1 13.8 137 386-531 6-157 (162)
9 3fdx_A Putative filament prote 98.9 2.9E-09 1E-13 98.5 10.4 137 386-531 2-142 (143)
10 3hgm_A Universal stress protei 98.9 2.1E-09 7.2E-14 99.9 9.1 136 387-530 4-146 (147)
11 3dlo_A Universal stress protei 98.9 4.6E-09 1.6E-13 99.3 10.2 129 385-531 24-154 (155)
12 3fg9_A Protein of universal st 98.9 3.6E-09 1.2E-13 99.7 9.3 136 385-531 15-155 (156)
13 3tnj_A Universal stress protei 98.9 3E-09 1E-13 99.4 8.6 137 386-531 7-145 (150)
14 2dum_A Hypothetical protein PH 98.9 8.8E-09 3E-13 98.5 11.7 138 386-531 6-154 (170)
15 2gm3_A Unknown protein; AT3G01 98.8 2E-08 6.9E-13 96.5 13.1 143 385-533 5-163 (175)
16 2z08_A Universal stress protei 98.8 7.4E-09 2.5E-13 95.2 9.1 131 387-531 4-136 (137)
17 1tq8_A Hypothetical protein RV 98.8 1.3E-08 4.4E-13 97.0 10.7 136 385-531 17-156 (163)
18 3idf_A USP-like protein; unive 98.8 1.3E-08 4.6E-13 93.5 9.5 132 387-531 3-137 (138)
19 1jmv_A USPA, universal stress 98.8 2E-08 6.7E-13 92.7 9.8 131 387-532 4-137 (141)
20 3mt0_A Uncharacterized protein 98.4 6.5E-07 2.2E-11 93.3 8.7 133 384-531 133-274 (290)
21 1q77_A Hypothetical protein AQ 98.4 6.3E-07 2.1E-11 82.2 7.4 128 386-531 5-137 (138)
22 3s3t_A Nucleotide-binding prot 98.3 2.1E-06 7.1E-11 79.3 10.9 128 548-693 5-146 (146)
23 3olq_A Universal stress protei 98.2 1.7E-06 5.7E-11 91.2 8.5 144 385-535 156-307 (319)
24 3hgm_A Universal stress protei 98.2 4.2E-06 1.4E-10 77.3 9.9 126 549-692 3-147 (147)
25 3loq_A Universal stress protei 98.2 2.9E-06 9.8E-11 88.5 9.4 119 384-531 169-288 (294)
26 3idf_A USP-like protein; unive 98.2 7.8E-06 2.7E-10 74.7 11.3 126 549-693 2-138 (138)
27 3fdx_A Putative filament prote 98.2 6E-06 2.1E-10 75.9 10.2 126 549-693 2-143 (143)
28 3dlo_A Universal stress protei 98.2 3.3E-06 1.1E-10 79.4 7.8 128 548-693 24-155 (155)
29 2z08_A Universal stress protei 98.1 6.6E-06 2.3E-10 75.2 9.4 125 549-693 3-137 (137)
30 1mjh_A Protein (ATP-binding do 98.1 2E-05 6.9E-10 74.1 12.4 130 548-695 5-160 (162)
31 3tnj_A Universal stress protei 98.1 1.2E-05 4E-10 74.6 10.1 128 548-695 6-148 (150)
32 2dum_A Hypothetical protein PH 98.1 2.5E-05 8.5E-10 74.2 12.4 132 548-695 5-157 (170)
33 3cis_A Uncharacterized protein 98.0 1.3E-05 4.4E-10 84.2 9.7 131 386-531 172-304 (309)
34 1tq8_A Hypothetical protein RV 98.0 1.7E-05 5.9E-10 75.1 9.3 130 548-696 17-160 (163)
35 1jmv_A USPA, universal stress 97.9 3.6E-05 1.2E-09 70.4 10.3 124 549-695 3-139 (141)
36 3fg9_A Protein of universal st 97.9 1.1E-05 3.8E-10 75.5 6.6 128 548-693 15-156 (156)
37 1q77_A Hypothetical protein AQ 97.8 0.00011 3.6E-09 67.0 10.8 98 548-651 4-119 (138)
38 2gm3_A Unknown protein; AT3G01 97.6 0.00025 8.4E-09 67.5 10.7 132 548-696 5-165 (175)
39 3zux_A Transporter, ASBTNM; tr 97.5 0.056 1.9E-06 57.1 28.3 105 30-145 42-150 (332)
40 3ab8_A Putative uncharacterize 97.5 0.00013 4.6E-09 74.5 7.3 130 550-696 2-151 (268)
41 3g40_A Na-K-CL cotransporter; 96.3 0.055 1.9E-06 55.0 14.2 220 386-652 21-255 (294)
42 1efp_B ETF, protein (electron 73.9 8.6 0.00029 38.4 8.3 92 558-664 36-141 (252)
43 1efv_B Electron transfer flavo 73.6 8.4 0.00029 38.6 8.1 92 558-664 39-144 (255)
44 1o97_C Electron transferring f 71.7 6 0.00021 39.9 6.5 93 558-664 36-140 (264)
45 3zux_A Transporter, ASBTNM; tr 70.8 59 0.002 33.6 14.2 94 222-325 28-125 (332)
46 1zun_A Sulfate adenylyltransfe 48.4 22 0.00075 36.8 5.9 55 550-612 48-102 (325)
47 2wsi_A FAD synthetase; transfe 45.2 78 0.0027 32.3 9.5 93 549-653 54-169 (306)
48 1iv0_A Hypothetical protein; r 40.5 49 0.0017 27.7 5.8 53 480-534 37-93 (98)
49 3fwk_A FMN adenylyltransferase 38.9 29 0.00099 35.6 4.9 91 550-652 60-171 (308)
50 1ni5_A Putative cell cycle pro 27.5 1.2E+02 0.0043 32.4 7.9 96 549-652 14-119 (433)
51 1wy5_A TILS, hypothetical UPF0 26.3 93 0.0032 31.7 6.4 58 549-612 25-83 (317)
52 2l69_A Rossmann 2X3 fold prote 25.5 91 0.0031 25.5 4.7 61 559-636 58-118 (134)
53 3a2k_A TRNA(Ile)-lysidine synt 24.9 79 0.0027 34.3 5.8 59 549-612 19-77 (464)
54 3s40_A Diacylglycerol kinase; 23.4 94 0.0032 31.4 5.7 35 549-583 9-46 (304)
55 1nu0_A Hypothetical protein YQ 23.1 1.3E+02 0.0045 26.7 5.9 54 480-534 39-96 (138)
56 2k4m_A TR8_protein, UPF0146 pr 22.0 1.1E+02 0.0038 27.8 5.0 38 470-507 90-127 (153)
57 4b4t_W RPN10, 26S proteasome r 20.8 1.9E+02 0.0064 28.9 7.1 38 549-587 107-147 (268)
58 1x0l_A Homoisocitrate dehydrog 20.0 2.4E+02 0.0084 29.0 7.9 89 562-662 147-237 (333)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.92 E-value=2.7e-25 Score=238.32 Aligned_cols=303 Identities=12% Similarity=0.112 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHH----HHhhh--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhHHHHHhhh
Q 047435 27 MVINTLSTLSGVYFIFIISVKMDTVKI----LRAAK--HTWFITIACLVIPYMIAMFLSRILSDYTPGVERGLFRLYFTS 100 (724)
Q Consensus 27 ~~l~~l~~iGl~~~lF~~Gle~d~~~l----~~~~k--~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~ 100 (724)
.....+.+-.+.+|||++|+|+|.+.+ ++.+| .+...++.|+++|++++. .+.... .....- ..
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~~~----~~~~~g--w~ 127 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNYAD----PITREG--WA 127 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCCSS----TTHHHH--TS
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhcCC----hhhhhh--hH
Confidence 345667778888999999999999887 55555 478889999999998732 222211 233344 55
Q ss_pred hhccccHHHHHHHHHhccccCCh-hHHHHHHHHHHHHHHHHHHHHH-HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 047435 101 LLSMTYFSTVADAVSELKLLTSE-LGQLAMSSSMLAELLGWIALMA-EAVFNKSLGHKAESSLCLIGLLFFSFLVVRPAV 178 (724)
Q Consensus 101 ~~s~Ts~~vv~~iL~el~ll~s~-~G~lals~a~i~D~~~~ill~i-~~~~~~~~~~~l~~~~~~~~f~~~~~~v~r~~~ 178 (724)
+.+.|+.+....++..++..... .++.+++.|++||+.+|+++++ +. ++. ...+... .++++++.
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt--~~~--~~~~l~~-~~~~~~~~-------- 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT--NDL--SMASLGV-AAVAIAVL-------- 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC--CCC--CHHHHHH-HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc--CCc--cHHHHHH-HHHHHHHH--------
Confidence 66678888888999998765544 5699999999999999999998 42 111 1222222 22222211
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC----ChhhHHHHHHhhhhhhhhhHHH
Q 047435 179 LLVVNRTPEGKPVKEGYVIGLMILPIAMGALTDMLGVSFALGALIVGLIVPAGP----PLGSALVEKCDFVISNILLPFF 254 (724)
Q Consensus 179 ~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~~~~~G~~~~lGaFlaGl~~~~~~----p~~~~l~ekl~~~~~~~flPlF 254 (724)
+..+|.. +++...+.++ . +.+.+.++..|+|+++|+|++|+++|..+ +..++++++++++++.+++|+|
T Consensus 195 -~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlF 267 (388)
T 1zcd_A 195 -AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLF 267 (388)
T ss_dssp -HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHH
T ss_pred -HHHHHhc----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1222321 1223333433 2 24556779999999999999999999863 4578999999999999999999
Q ss_pred -HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhHHHHHHHHhhhhhhHHHHhh
Q 047435 255 -YLRIGLLTNVHSIKNFKSFAALETILVGAYVGKLVGSLCTVLFF----------GTSLRFGILFSFILNVKGINEFMLL 323 (724)
Q Consensus 255 -F~~~G~~~d~~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~l~~~ 323 (724)
|+..|.++|...+..... .....+++..+++|++|++..++.. |++|+|...+|.+++.+++++++++
T Consensus 268 aFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia 346 (388)
T 1zcd_A 268 AFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA 346 (388)
T ss_dssp HHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred HHHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence 999999999854322101 1123455566899999966666665 9999999999999999999999999
Q ss_pred hhccccccC--CChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 047435 324 NRLRVNFKT--IDEASYATMVLSHLAVNAIVTPIICIYHK 361 (724)
Q Consensus 324 ~~~~~~~~~--i~~~~~~~lv~~~ll~t~i~~~l~~~l~~ 361 (724)
+++++ .+. +.++.+..+++++++++++++.++++.++
T Consensus 347 ~laf~-~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 347 SLAFG-SVDPELINWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp HHHST-TSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred HHhcc-CCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998 765 35677999999999998888888876653
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.69 E-value=1.2e-15 Score=160.20 Aligned_cols=255 Identities=10% Similarity=0.026 Sum_probs=170.6
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-|||+|++++++....++.+..++... ...++++|+++ + .+ .....++..+.++ .
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~-~---------~~-------~~~~l~~~~~~~~----~-- 62 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEK-R---------RD-------HSAALNDLAQELR----E-- 62 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECS-S---------SC-------CHHHHHHHHHHHH----H--
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeC-c---------HH-------HHHHHHHHHHHHh----h--
Confidence 489999999999999999988887653 35899999986 1 00 0111222323222 2
Q ss_pred CCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEEecCCCCCCCcccc
Q 047435 466 VPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLLVDKSSTTGHFYSI 544 (724)
Q Consensus 466 ~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~~~ 544 (724)
.++.++...... ++..+.|++.|+++++|+||+|+|++.. +.. .+|++.+++++++||+|.++ +...+
T Consensus 63 ~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~-~~gs~~~~vl~~~~~PVlvv--~~~~~------ 131 (290)
T 3mt0_A 63 EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA-ILTPDDWKLLRFAPCPVLMT--KTARP------ 131 (290)
T ss_dssp TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT-SCCHHHHHHHHHCSSCEEEE--CCCSC------
T ss_pred CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhc-ccCHHHHHHHhcCCCCEEEe--cCCCC------
Confidence 245566554433 7899999999999999999999998764 221 68999999999999998765 32111
Q ss_pred CCcceEEEEeecCCcc-------hHHHHHHHHHHhcCCCeEEEEEEEeeccccc---c---chhhhhhhHHHHHHHHHhh
Q 047435 545 GHFTYSLVVLFLGGAD-------DREALALVSRMSGHPGLSITVFRITVIEDEQ---S---EYDCERHLDEIAINEFITN 611 (724)
Q Consensus 545 ~~~~~~I~v~f~GG~d-------dreAL~~a~rma~~~~~~ltv~r~~~~~~~~---~---~~~~~~~~d~~~i~~~~~~ 611 (724)
. ...+|++++-|.++ .+.|+++|.++|+..+.+++++|+.+..... . ..+..++..++.++++..+
T Consensus 132 ~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (290)
T 3mt0_A 132 W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAE 210 (290)
T ss_dssp S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1 24699999999998 7999999999999999999999998532110 0 0011122234556666655
Q ss_pred ccCCCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccE
Q 047435 612 NISNACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSV 689 (724)
Q Consensus 612 ~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~sv 689 (724)
.... .+.+. +..| +..+.|.+.+ .++||+|+|+++.. |+.+| -+|...+.+.. .++++|
T Consensus 211 ~g~~-~~~~~---v~~g-~~~~~I~~~a~~~~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~----~~~~pV 271 (290)
T 3mt0_A 211 YGFS-DEQLH---IEEG-PADVLIPRTAQKLDAVVTVIGTVART------GLSGA----LIGNTAEVVLD----TLESDV 271 (290)
T ss_dssp HTCC-TTTEE---EEES-CHHHHHHHHHHHHTCSEEEEECCSSC------CGGGC----CSCHHHHHHHT----TCSSEE
T ss_pred cCCC-cceEE---Eecc-CHHHHHHHHHHhcCCCEEEECCCCCc------CCcce----ecchHHHHHHh----cCCCCE
Confidence 4221 12111 1222 2233333332 45999999988642 44443 48999999996 567999
Q ss_pred EEEEecc
Q 047435 690 LVIQCGI 696 (724)
Q Consensus 690 Lvvqq~~ 696 (724)
|||..+.
T Consensus 272 Lvv~~~~ 278 (290)
T 3mt0_A 272 LVLKPDD 278 (290)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998543
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.66 E-value=2.6e-15 Score=159.50 Aligned_cols=277 Identities=12% Similarity=0.014 Sum_probs=175.1
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhh-hcccccchHHHHHHHHHhhhcC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKL-RLIREDSTYRIMHAAEKQFRSS 464 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~ 464 (724)
-|||+|++++++....++.+..++... ...++++|+++......+........+. ........++.++.+......
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 84 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE- 84 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 489999999999999999988887653 3689999998642111010000000000 000111223334433332222
Q ss_pred CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEEecCCCCCCCccc
Q 047435 465 DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLLVDKSSTTGHFYS 543 (724)
Q Consensus 465 ~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~~ 543 (724)
.+++++..... .++..++|++.|+++++||||+|+|++.. +.. .+|++.++|++++||+|.++-.+. .
T Consensus 85 -~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~-~~Gs~~~~vl~~~~~PVlvv~~~~-~------ 153 (319)
T 3olq_A 85 -AGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSL-IFTPLDWQLLRKCPAPVWMVKDKE-W------ 153 (319)
T ss_dssp -TTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSC-BCCHHHHHHHHHCSSCEEEEESSC-C------
T ss_pred -cCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCchhhcc-cccccHHHHHhcCCCCEEEecCcc-c------
Confidence 35666666543 38999999999999999999999998754 221 689999999999999987653322 1
Q ss_pred cCCcceEEEEeecCCcc-------hHHHHHHHHHHhcCC--CeEEEEEEEeeccccc--------cch---hhhhhhHHH
Q 047435 544 IGHFTYSLVVLFLGGAD-------DREALALVSRMSGHP--GLSITVFRITVIEDEQ--------SEY---DCERHLDEI 603 (724)
Q Consensus 544 ~~~~~~~I~v~f~GG~d-------dreAL~~a~rma~~~--~~~ltv~r~~~~~~~~--------~~~---~~~~~~d~~ 603 (724)
....+|++++-|.++ .+.|+++|.++|+.. +.+++++|+.+..... +.+ +..++..++
T Consensus 154 --~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (319)
T 3olq_A 154 --PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLI 231 (319)
T ss_dssp --CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHH
T ss_pred --ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHH
Confidence 124699999999985 499999999999876 9999999997532110 000 111122345
Q ss_pred HHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCC
Q 047435 604 AINEFITNNISNACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVD 681 (724)
Q Consensus 604 ~i~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d 681 (724)
.++++..++... .+.+. +..| +..+.|.+.+ .+.||+++|+++.. |+.+| -+|...+.+..
T Consensus 232 ~l~~~~~~~~~~-~~~~~---v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~------~~~~~----~~Gsv~~~vl~-- 294 (319)
T 3olq_A 232 AMKELRQKFSIP-EEKTH---VKEG-LPEQVIPQVCEELNAGIVVLGILGRT------GLSAA----FLGNTAEQLID-- 294 (319)
T ss_dssp HHHHHHHHTTCC-GGGEE---EEES-CHHHHHHHHHHHTTEEEEEEECCSCC------STHHH----HHHHHHHHHHT--
T ss_pred HHHHHHHHhCCC-cccEE---EecC-CcHHHHHHHHHHhCCCEEEEeccCcc------CCccc----cccHHHHHHHh--
Confidence 566666654321 22221 2222 1233343333 46899999997542 33333 48999999986
Q ss_pred CCCCcccEEEEEeccC
Q 047435 682 FCKGMTSVLVIQCGIG 697 (724)
Q Consensus 682 ~~~~~~svLvvqq~~~ 697 (724)
.++++||||..+..
T Consensus 295 --~~~~pVLvv~~~~~ 308 (319)
T 3olq_A 295 --HIKCDLLAIKPDGF 308 (319)
T ss_dssp --TCCSEEEEECCTTC
T ss_pred --hCCCCEEEECCCCC
Confidence 56799999987654
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.65 E-value=6.2e-16 Score=162.67 Aligned_cols=266 Identities=8% Similarity=0.040 Sum_probs=174.0
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-|||+|++++++....++.+..++.. ....++++|+++........ ......+.........++.++.+.+..+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLSTVS-GGIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 48999999999999999998888765 34789999999865422110 00000000001122345555555554443
Q ss_pred CCeEEEE-eEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEEecCCCCCCCccc
Q 047435 466 VPFTILP-YKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLLVDKSSTTGHFYS 543 (724)
Q Consensus 466 ~~v~v~~-~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~~~~~~~ 543 (724)
.+++++. ... ..++..+.| .++++++|+||+|.|++.. .. ..+|++.++|++++||+|.++-+....
T Consensus 98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~-~~~Gs~~~~vl~~~~~PVlvv~~~~~~------ 166 (294)
T 3loq_A 98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKK-ILLGSVSEGVLHDSKVPVYIFKHDMVV------ 166 (294)
T ss_dssp TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHH-HHHCCHHHHHHHHCSSCEEEECCCTTT------
T ss_pred cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccccc-eeeccHHHHHHhcCCCCEEEecCcccc------
Confidence 2566665 322 137889999 9999999999999997653 11 067999999999999998765222111
Q ss_pred cCCcceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEE
Q 047435 544 IGHFTYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQV 623 (724)
Q Consensus 544 ~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~ 623 (724)
.....+|++++-|.+++++|+++|.++++..+.+++++++.+... .++.-++..+.+... +.++.+
T Consensus 167 -~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------~~~~l~~~~~~l~~~---~~~~~~--- 232 (294)
T 3loq_A 167 -NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------KTADLRVMEEVIGAE---GIEVHV--- 232 (294)
T ss_dssp -TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------CHHHHHHHHHHHHHT---TCCEEE---
T ss_pred -CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------HHHHHHHHHHHHHHc---CCcEEE---
Confidence 122469999999999999999999999999999999999875421 111122333333332 223432
Q ss_pred EecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEEecc
Q 047435 624 IAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQCGI 696 (724)
Q Consensus 624 ~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvqq~~ 696 (724)
.+..+ +..+.|.+.+ .++||+|+|+++.. ++.+| -+|...+.+.. .++++||||.+..
T Consensus 233 ~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~----~~~~pvLvv~~~~ 292 (294)
T 3loq_A 233 HIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIR----RSPVPVFVCKRGD 292 (294)
T ss_dssp EEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHH----HCSSCEEEECSCT
T ss_pred EEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHh----cCCCCEEEECCCC
Confidence 23344 3344444443 47999999998642 33333 47888888886 4668999998764
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.63 E-value=3.9e-15 Score=157.78 Aligned_cols=276 Identities=15% Similarity=0.125 Sum_probs=172.1
Q ss_pred ceeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccc-cccchhhhhhcccccchHHHHHHHHHhhhc
Q 047435 385 ELRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPV-LAPYNAQKLRLIREDSTYRIMHAAEKQFRS 463 (724)
Q Consensus 385 elrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~-~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 463 (724)
.-|||+|++++++....++.+..++... ...++++|+++......+. ..+.+..+ ......++.++.+.+..+.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 93 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVSPEVATWLEVPLPPGVLR---WQQDHGRHLIDDALKVVEQ 93 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECCCCCCCTTCCCCCHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEecCcccccccCCCCchhhH---HHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999888887542 3579999998722111010 00100000 0112233444433322221
Q ss_pred C---CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEEecCCCCCC
Q 047435 464 S---DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLLVDKSSTTG 539 (724)
Q Consensus 464 ~---~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~~~ 539 (724)
. ..++.++.... .++..++|++.|+ ++|+||||.|++.. ... .+|++.++|++++||+|.++-......
T Consensus 94 ~~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~-~~Gs~~~~vl~~~~~PVlvv~~~~~~~- 166 (309)
T 3cis_A 94 ASLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGR-LLGSVSSGLLRHAHCPVVIIHDEDSVM- 166 (309)
T ss_dssp HCSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCCTTC-CSCHHHHHHHHHCSSCEEEECTTCCCS-
T ss_pred hcccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCcccccc-ccCcHHHHHHHhCCCCEEEEcCCcccC-
Confidence 1 01455555433 3789999999996 89999999998754 221 689999999999999987653222110
Q ss_pred CccccCCcceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccc----cchhhhhhhHHHHHHHHHhhcc--
Q 047435 540 HFYSIGHFTYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQ----SEYDCERHLDEIAINEFITNNI-- 613 (724)
Q Consensus 540 ~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~----~~~~~~~~~d~~~i~~~~~~~~-- 613 (724)
......+|++++-|.+.++.|+++|.++|+..+.+++++++.+..... ...+..++..++.+++......
T Consensus 167 ----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (309)
T 3cis_A 167 ----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQER 242 (309)
T ss_dssp ----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhh
Confidence 012246899999999999999999999999999999999987532110 0001111112233433332211
Q ss_pred -CCCceEEEEEEecChHHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEE
Q 047435 614 -SNACVACRQVIAKNTTEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVI 692 (724)
Q Consensus 614 -~~~~v~y~e~~v~~~~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvv 692 (724)
.+.++++. +..| +..+.|.+.+++.||+|+|+++.. ++.+| -+|...+.+.. .++++||||
T Consensus 243 ~~~~~~~~~---~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~----~~~~pVlvv 304 (309)
T 3cis_A 243 YPNVAITRV---VVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQ----LARTPVIVA 304 (309)
T ss_dssp CTTSCEEEE---EESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHH----HCSSCEEEE
T ss_pred CCCCcEEEE---EEcC-CHHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHh----cCCCCEEEe
Confidence 12334332 3344 345555555568999999998642 33332 48999998886 466899999
Q ss_pred Ee
Q 047435 693 QC 694 (724)
Q Consensus 693 qq 694 (724)
..
T Consensus 305 ~~ 306 (309)
T 3cis_A 305 RE 306 (309)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.60 E-value=1.3e-14 Score=150.31 Aligned_cols=256 Identities=13% Similarity=0.070 Sum_probs=167.1
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccc-----cchhhhh----hcccccchHHHHHHH
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLA-----PYNAQKL----RLIREDSTYRIMHAA 457 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~-----~~~~~~~----~~~~~~~~~~i~~af 457 (724)
|||+|++++++....++.+..++... ...++++|+++......+... ..+..+. .....+..++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999988887643 357999999885421000000 0000000 000112334455555
Q ss_pred HHhhhcCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCC-C-CCcccchhHHHHHhhcCCCceEEEecCC
Q 047435 458 EKQFRSSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKR-Q-GRTTNLQNFDMNIQAHAPCTVGLLVDKS 535 (724)
Q Consensus 458 ~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~-~-g~~~~~~~~~~~Vl~~ApCsVgilVdrg 535 (724)
.+..+.. +++++..... ++..+.|++. ++++|+||||.|++. . ... .+|++.++|++++||+|.++ .++
T Consensus 80 ~~~~~~~--g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~-~~Gs~~~~v~~~a~~PVlvv-~~~ 150 (268)
T 3ab8_A 80 RQSALAA--GVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGFG-GLGSTADRVLRASPVPVLLA-PGE 150 (268)
T ss_dssp HHHHHHT--TCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCC-SCCHHHHHHHHHCSSCEEEE-CSS
T ss_pred HHHHHhC--CCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCcccccc-ccchhHHHHHHhCCCCEEEE-CCC
Confidence 4444332 4555555442 6899999998 899999999999875 4 221 68999999999999998665 222
Q ss_pred CCCCCccccCCcceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCC
Q 047435 536 STTGHFYSIGHFTYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISN 615 (724)
Q Consensus 536 ~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~ 615 (724)
.. ...+|++++-|.++++.|+++|.++++..+.+++++++.+.. +..++.-++..+.+... +
T Consensus 151 ~~---------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~------~~~~~~l~~~~~~l~~~---~ 212 (268)
T 3ab8_A 151 PV---------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP------ARAEAWALEAEAYLRDH---G 212 (268)
T ss_dssp CC---------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH------HHHHHHHHHHHHHHHHT---T
T ss_pred CC---------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH------HHHHHHHHHHHHHHHHc---C
Confidence 11 135999999999999999999999999999999999986431 11111122233333322 2
Q ss_pred CceEEEEEEecChHHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 616 ACVACRQVIAKNTTEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 616 ~~v~y~e~~v~~~~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
.++.+. +.+| +..+.|.+.++++||+++|+ ++.+ --+|...+.+.. .++++||||.
T Consensus 213 ~~~~~~---~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~----~~~Gs~~~~vl~----~~~~pvlvv~ 268 (268)
T 3ab8_A 213 VEASAL---VLGG-DAADHLLRLQGPGDLLALGA----------PVRR----LVFGSTAERVIR----NAQGPVLTAR 268 (268)
T ss_dssp CCEEEE---EECS-CHHHHHHHHCCTTEEEEEEC----------CCSC----CSSCCHHHHHHH----HCSSCEEEEC
T ss_pred CceEEE---EeCC-ChHHHHHHHHHhCCEEEECC----------cccc----cEeccHHHHHHh----cCCCCEEEeC
Confidence 234332 3344 35566666666669999998 2223 248999988886 4668999983
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.00 E-value=1.2e-09 Score=101.48 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=94.3
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-|||+|++.+++....++.+..++.. ....++++|+++........... ...+.........++.++.+.+..+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~-- 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDP-VLSELLDAEAAHAKDAMRQRQQFVAT-- 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 48999999999999999998888764 34689999999875432211100 00000011123345555555554433
Q ss_pred CCe-EEEEeEEEcCCCChHHHHHH-HHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 466 VPF-TILPYKMIAPYDTMHESICE-LVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 466 ~~v-~v~~~~~vs~~~~m~~~I~~-~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
.++ .++..... ++..+.|++ .|+++++|+||||.|++.. .+. .+|++.++|++++||+|.++
T Consensus 81 ~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~-~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 TSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRV-AVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp SSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTC-SSCHHHHHHHHHCSSEEEEE
T ss_pred cCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCcceE-EEcchHHHHhccCCCCEEEe
Confidence 245 55555443 689999999 9999999999999998764 221 68999999999999998764
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.97 E-value=5.3e-09 Score=99.12 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=92.0
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeec-----CCCcccc-----c-cch---hhhhhcccccchH
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELV-----GRASPVL-----A-PYN---AQKLRLIREDSTY 451 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~-----~r~~p~~-----~-~~~---~~~~~~~~~~~~~ 451 (724)
-|||+|++.+++....++.+..++.. ....++++|+++.. ... +.. . +.+ ..+......+..+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIF-SLLLGVAGLNKSVEEFENELKNKLTEEAK 82 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCeEEEEEEecCccccccccc-cccccccccccchhhhHHHHHHHHHHHHH
Confidence 48999999999999999999999875 34789999999854 110 100 0 110 0000001112334
Q ss_pred HHHHHHHHhhhcCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEE
Q 047435 452 RIMHAAEKQFRSSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGL 530 (724)
Q Consensus 452 ~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgi 530 (724)
+.++.+.+..+. .++.++..... ++..+.|++.|+++++|+||||.|++.. .+. .+|++.++|++++||+|.|
T Consensus 83 ~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~-~~GSv~~~vl~~~~~pVlv 156 (162)
T 1mjh_A 83 NKMENIKKELED--VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEI-LLGSVTENVIKKSNKPVLV 156 (162)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTC-SSCHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHHH--cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCccce-EecchHHHHHHhCCCCEEE
Confidence 444444333322 24566655433 6899999999999999999999998764 221 6899999999999999876
Q ss_pred E
Q 047435 531 L 531 (724)
Q Consensus 531 l 531 (724)
+
T Consensus 157 v 157 (162)
T 1mjh_A 157 V 157 (162)
T ss_dssp E
T ss_pred E
Confidence 5
No 9
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.94 E-value=2.9e-09 Score=98.54 Aligned_cols=137 Identities=13% Similarity=0.065 Sum_probs=90.3
Q ss_pred eeEEEEeeccCC--hHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhc
Q 047435 386 LRIFCGVHFEGN--IRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRS 463 (724)
Q Consensus 386 lrILvcv~~~~~--~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 463 (724)
-|||+|++..++ ....++.+..++.. ....++++|+++......+....... .........++..+.++++.+.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 77 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYTA--ELPGMDELREGSETQLKEIAKK 77 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH--HTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh--cCCeEEEEEEecCCcccccccccccc--hhhhHHHHHHHHHHHHHHHHHH
Confidence 389999999999 88888888777754 33689999999865322111000000 0001112345566667766654
Q ss_pred CC-CCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcc-cchhHHHHHhhcCCCceEEE
Q 047435 464 SD-VPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTT-NLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 464 ~~-~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~-~~~~~~~~Vl~~ApCsVgil 531 (724)
.. ..+.++..... ++..+.|++.|+++++|+||||.|+ .. ..+ .+|++.++|++++||+|.++
T Consensus 78 ~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~-~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 78 FSIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PD-ITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp SCCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TT-CCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred cCCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CC-CeeeeeccHHHHHHHhCCCCEEEe
Confidence 32 22345555443 6999999999999999999999995 32 112 68999999999999998764
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.93 E-value=2.1e-09 Score=99.93 Aligned_cols=136 Identities=12% Similarity=0.047 Sum_probs=91.2
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccc--cccchh-hhhhcccccchHHHHHHHHHhhhc
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPV--LAPYNA-QKLRLIREDSTYRIMHAAEKQFRS 463 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~--~~~~~~-~~~~~~~~~~~~~i~~af~~~~~~ 463 (724)
|||+|++.+++....++.+..++... ...++++|+++........ ..+... .+.........++.++.+.+..+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999988887643 3689999999864310000 000000 000001123345555555554443
Q ss_pred CCCCeEE---EEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEE
Q 047435 464 SDVPFTI---LPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGL 530 (724)
Q Consensus 464 ~~~~v~v---~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgi 530 (724)
. ++++ +..... ++..+.|++.|++.++|+||+|.|++.. .+. .+|++.++|++++||+|.+
T Consensus 82 ~--g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~-~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 82 L--GVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSL-LLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp T--TCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCC-CCCHHHHHHHHHCSSCEEE
T ss_pred c--CCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccccce-eeccHHHHHHhhCCCCEEE
Confidence 2 3333 444333 7899999999999999999999998764 221 6899999999999999865
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.90 E-value=4.6e-09 Score=99.31 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=91.4
Q ss_pred ceeEEEEeec-cCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhc
Q 047435 385 ELRIFCGVHF-EGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRS 463 (724)
Q Consensus 385 elrILvcv~~-~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 463 (724)
--|||+|++. +++....++.+..++... ...++++|+++..... .+. .....++.++.+.+..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~------~~~------~~~~~~~~l~~~~~~~~~ 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRT------KDE------DIIEAKETLSWAVSIIRK 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTS------CHH------HHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCcc------cHH------HHHHHHHHHHHHHHHHHh
Confidence 3589999999 999999999988887643 3579999998854211 010 112334455544444333
Q ss_pred CCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 464 SDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 464 ~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
. .+.++..+.+ ..++..+.|++.|+|.++|+||||.|++.. ... .+|++.++|++++||+|.++
T Consensus 90 ~--g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~-~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 E--GAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL-IFGSVARDVILKANKPVICI 154 (155)
T ss_dssp T--TCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE-ECCHHHHHHHHHCSSCEEEE
T ss_pred c--CCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE-EeccHHHHHHHhCCCCEEEe
Confidence 2 3344443333 247999999999999999999999998764 221 68999999999999998764
No 12
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.89 E-value=3.6e-09 Score=99.71 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=92.2
Q ss_pred ceeEEEEee--ccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhh
Q 047435 385 ELRIFCGVH--FEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFR 462 (724)
Q Consensus 385 elrILvcv~--~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 462 (724)
--|||+|++ ++++....++.+..++... ...++++|+++....... ..... +.........++.++.+.+..+
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 89 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDINIF--DSLTP-SKIQAKRKHVEDVVAEYVQLAE 89 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCC--CSSHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCcccc--ccCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999 9999999999888887642 357999999986532111 00000 0001112234445554444333
Q ss_pred cCCCCe-EEEEeEEEcCCCChHHHHHHH-HHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 463 SSDVPF-TILPYKMIAPYDTMHESICEL-VKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 463 ~~~~~v-~v~~~~~vs~~~~m~~~I~~~-A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
.. ++ .++.....+ ++..+.|++. |+++++|+||+|.|++.. +. .+|++.++|++++||+|.++
T Consensus 90 ~~--g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~--~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 90 QR--GVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHSK--IAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HH--TCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTSS--SCSCHHHHHHHHCSSEEEEE
T ss_pred Hc--CCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccce--eecchHHHHHHhCCCCEEEe
Confidence 22 33 355554442 7899999999 999999999999998765 43 68999999999999998764
No 13
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.89 E-value=3e-09 Score=99.43 Aligned_cols=137 Identities=10% Similarity=0.087 Sum_probs=83.3
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-|||+|++.+++....++.+..++.. ....++++|+++......+.+........+.......++..+.++++.+..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 83 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL- 83 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 48999999999999999998888765 346899999988543210011000000000001112233334444444332
Q ss_pred CCeE-EEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 466 VPFT-ILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 466 ~~v~-v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
++. ++.... .++..+.|++.|+++++|+||+|.|++.. . . .+|++.++|++++||+|.++
T Consensus 84 -~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~-~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 84 -GIDPAHRWLV---WGEPREEIIRIAEQENVDLIVVGSHGRHGLA-L-LLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp -TCCGGGEEEE---ESCHHHHHHHHHHHTTCSEEEEEEC----------CCCHHHHHHHHCSSEEEEE
T ss_pred -CCCcceEEEe---cCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-e-EecchHHHHHHhCCCCEEEE
Confidence 121 222222 27899999999999999999999998764 4 2 68999999999999998765
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.88 E-value=8.8e-09 Score=98.49 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=89.9
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccc-ccc-------chhhhhhcccccchHHHHHHH
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPV-LAP-------YNAQKLRLIREDSTYRIMHAA 457 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~-~~~-------~~~~~~~~~~~~~~~~i~~af 457 (724)
-|||+|++..++....++.+..++.. ....++++|+++........ -.+ .+..+.........++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKM--EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCS--CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999875 34789999998743211000 000 000000000112233444443
Q ss_pred HHhhhcCCCCeEEEE--eEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 458 EKQFRSSDVPFTILP--YKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 458 ~~~~~~~~~~v~v~~--~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
.+..+.. ++.++. ... .++..+.|++.|+++++|+||+|.|++.. .+. .+|++.++|++++||+|.|+
T Consensus 84 ~~~~~~~--g~~~~~~~~~~---~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~-~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 84 AEEVKRA--FRAKNVRTIIR---FGIPWDEIVKVAEEENVSLIILPSRGKLSLSHE-FLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHH--TTCSEEEEEEE---EECHHHHHHHHHHHTTCSEEEEESCCCCC--TT-CCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHc--CCceeeeeEEe---cCChHHHHHHHHHHcCCCEEEECCCCCCccccc-eechHHHHHHHhCCCCEEEE
Confidence 3332221 333443 332 26899999999999999999999998764 221 68999999999999998776
No 15
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.85 E-value=2e-08 Score=96.52 Aligned_cols=143 Identities=12% Similarity=0.121 Sum_probs=86.9
Q ss_pred ceeEEEEeeccC---------ChHHHHHHHHHhCCCC-CCCcEEEEEEEeeecCCCc----cccc-cchhhhhhcccccc
Q 047435 385 ELRIFCGVHFEG---------NIRSIVALLKACNPCE-TSPMCVYLVHLIELVGRAS----PVLA-PYNAQKLRLIREDS 449 (724)
Q Consensus 385 elrILvcv~~~~---------~~~~li~l~~~~~~~~-~~p~~v~~lhlvel~~r~~----p~~~-~~~~~~~~~~~~~~ 449 (724)
--|||+|++..+ .....++.+..+...+ .....++++|+++...... +.+. +....+........
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 358999999999 8889999988865322 2357899999986432110 0000 00000000001112
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCce
Q 047435 450 TYRIMHAAEKQFRSSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTV 528 (724)
Q Consensus 450 ~~~i~~af~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsV 528 (724)
.++.++.+....+. .++.++..+.. ++..+.|++.|+++++||||||.|++.. ... .+|++.++|++++||+|
T Consensus 85 ~~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~-~~Gsva~~vl~~a~~pV 158 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKV-FVGTVSAFCVKHAECPV 158 (175)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC---------CHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhh-hcCchHHHHHhCCCCCE
Confidence 33444444433222 24555554432 7899999999999999999999998764 221 68999999999999998
Q ss_pred EEEec
Q 047435 529 GLLVD 533 (724)
Q Consensus 529 gilVd 533 (724)
.|+-.
T Consensus 159 lvv~~ 163 (175)
T 2gm3_A 159 MTIKR 163 (175)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 77643
No 16
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.84 E-value=7.4e-09 Score=95.24 Aligned_cols=131 Identities=17% Similarity=0.086 Sum_probs=84.8
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCCC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSDV 466 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 466 (724)
|||+|++.+++....++.+..++.. ....++++|+++.... +. ......+ ......++..+.++++.+..
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~--~~-~~~~~~~---~~~~~~~~~~~~l~~~~~~~-- 73 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEA--HGARLIVVHAYEPVPD--YL-GEPFFEE---ALRRRLERAEGVLEEARALT-- 73 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHHH--
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCCCc--cc-cccchHH---HHHHHHHHHHHHHHHHHHHc--
Confidence 7999999999999999888888754 2368999999873211 11 0000000 00111122223333333221
Q ss_pred Ce-EEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 467 PF-TILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 467 ~v-~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
++ .++.... .++..+.|++.|+|+++|+||||.|++.. ++. .+|++.++|++++||+|.++
T Consensus 74 g~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~-~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 74 GVPKEDALLL---EGVPAEAILQAARAEKADLIVMGTRGLGALGSL-FLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCCGGGEEEE---ESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCS-SSCHHHHHHHHHCSSCEEEE
T ss_pred CCCccEEEEE---ecCHHHHHHHHHHHcCCCEEEECCCCCchhhhh-hhccHHHHHHhcCCCCEEEe
Confidence 23 3333322 27899999999999999999999998764 221 68999999999999998764
No 17
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.83 E-value=1.3e-08 Score=97.02 Aligned_cols=136 Identities=11% Similarity=0.073 Sum_probs=89.6
Q ss_pred ceeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEE--EEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhh
Q 047435 385 ELRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLV--HLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFR 462 (724)
Q Consensus 385 elrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~l--hlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 462 (724)
--|||+|++.+++....++.+..++. .+ ..++++ |+++......+.....+ +......+..++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAADILKDE--SYKVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCcccccccccccH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999988886 43 678999 88765421011000000 0001122345556665555443
Q ss_pred cCCCCeE-EEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcc-cchhHHHHHhhcCCCceEEE
Q 047435 463 SSDVPFT-ILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTT-NLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 463 ~~~~~v~-v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~-~~~~~~~~Vl~~ApCsVgil 531 (724)
. .+++ ++.... ..+..+.|++.|++.++||||||.|++.. ..+ .+|++.++|++++||+|.++
T Consensus 92 ~--~gv~~v~~~v~---~G~~~~~I~~~a~~~~~DLIV~G~~g~~~-~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 92 N--AGAKNVEERPI---VGAPVDALVNLADEEKADLLVVGNVGLST-IAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp T--TTCCEEEEEEE---CSSHHHHHHHHHHHTTCSEEEEECCCCCS-HHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred H--cCCCeEEEEEe---cCCHHHHHHHHHHhcCCCEEEECCCCCCc-ccceeeccHHHHHHHhCCCCEEEE
Confidence 3 2454 555543 37899999999999999999999998764 112 68999999999999998765
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.80 E-value=1.3e-08 Score=93.47 Aligned_cols=132 Identities=9% Similarity=0.018 Sum_probs=91.1
Q ss_pred eEEEEeeccCChHHHHHHHHHhC-CCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccc-cchHHHHHHHHHhhhcC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACN-PCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIRE-DSTYRIMHAAEKQFRSS 464 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~-~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~ 464 (724)
|||+|++.+++....++.+..++ .. ....++++|+++........ .....+...... ...++.++.+.+..+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEA--VLAAYDEIEMKEEEKAKLLTQKFSTFFTE- 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCccccc--ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 79999999999999999999998 54 34789999999865332110 000000000111 3344555555554443
Q ss_pred CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 465 DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 465 ~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
.+++++..... ++..+.|++.|+ ++|+||||.|++.. .+. . |++.++|++++||+|.++
T Consensus 78 -~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~-~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 -KGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLNKI-F-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp -TTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTSSC-C-CCTTCHHHHHCSSCEEEE
T ss_pred -CCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHHHH-h-CcHHHHHHhcCCCCEEEe
Confidence 24555555443 689999999998 99999999998764 331 5 999999999999998764
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.77 E-value=2e-08 Score=92.71 Aligned_cols=131 Identities=8% Similarity=0.045 Sum_probs=84.5
Q ss_pred eEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeee-cCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 387 RIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIEL-VGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 387 rILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel-~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
|||+|++.+++....++.+..++.. ....++++|+++. +... +........+ ......++..+.++++.+..
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~- 76 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLY-TGLIDVNMSS---MQDRISTETQKALLDLAESV- 76 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGC-CCCEEHHHHH---HTTCCCCHHHHHHHHHHHHS-
T ss_pred eEEEEecCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhh-ccccccchHH---HHHHHHHHHHHHHHHHHHHc-
Confidence 7999999999999999988888764 2368999999843 2111 1110000000 01111122233333343332
Q ss_pred CCeEE-EEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEEe
Q 047435 466 VPFTI-LPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLLV 532 (724)
Q Consensus 466 ~~v~v-~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgilV 532 (724)
++++ +.... .++..+.|++.|++.++|+||||.| +.. ++ +|++.++|++++||+|.++-
T Consensus 77 -~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~---lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 77 -DYPISEKLSG---SGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK---LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp -SSCCCCEEEE---EECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH---HHHHHHHHHTTCCSEEEEEE
T ss_pred -CCCceEEEEe---cCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh---hcchHHHHHhcCCCCEEEee
Confidence 2222 22222 2789999999999999999999999 543 22 68999999999999987763
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.36 E-value=6.5e-07 Score=93.28 Aligned_cols=133 Identities=11% Similarity=-0.015 Sum_probs=84.8
Q ss_pred CceeEEEEeeccCC-------hHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHH
Q 047435 384 SELRIFCGVHFEGN-------IRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHA 456 (724)
Q Consensus 384 ~elrILvcv~~~~~-------~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~a 456 (724)
..-|||+|++..++ ....++.+..++... ...++++|+++....... .+.. + ......++..+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~--~~~~--~---~~~~~~~~~~~~ 203 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA--KATLHVISAHPSPMLSSA--DPTF--Q---LSETIEARYREA 203 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEC-----------CH--H---HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc--CCeEEEEEEecCcccccc--Cchh--H---HHHHHHHHHHHH
Confidence 34589999999988 778888887776542 368999999886533211 1110 0 000111222233
Q ss_pred HHHhhhcCCCCeE-EEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 457 AEKQFRSSDVPFT-ILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 457 f~~~~~~~~~~v~-v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
++.+.+.. ++. ++.... . ++..+.|++.|+++++|||+||.|++.. ... .+|++.++|++++||+|.++
T Consensus 204 l~~~~~~~--g~~~~~~~v~-~--g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~-~~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 204 CRTFQAEY--GFSDEQLHIE-E--GPADVLIPRTAQKLDAVVTVIGTVARTGLSGA-LIGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp HHHHHHHH--TCCTTTEEEE-E--SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGC-CSCHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHc--CCCcceEEEe-c--cCHHHHHHHHHHhcCCCEEEECCCCCcCCcce-ecchHHHHHHhcCCCCEEEE
Confidence 33343322 221 122221 2 6899999999999999999999998864 211 79999999999999998776
No 21
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.35 E-value=6.3e-07 Score=82.19 Aligned_cols=128 Identities=7% Similarity=-0.014 Sum_probs=81.5
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEe-ee-cCCCc-cc-cccchhhhhhcccccchHHHHHHHHHh-
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLI-EL-VGRAS-PV-LAPYNAQKLRLIREDSTYRIMHAAEKQ- 460 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlv-el-~~r~~-p~-~~~~~~~~~~~~~~~~~~~i~~af~~~- 460 (724)
-|||+|++.+++....++.+..++.. ....++++|++ +. +.... .. -.+... +.........++.++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 81 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTFGLPFPP-EIKEESKKRIERRLREVWEKL 81 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHHCCCCCT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEecccccccccccccCCCCCh-HHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999888865 34689999998 63 10000 00 001000 00000112233344433222
Q ss_pred hhcCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcccchhHHHHHhhcCCCceEEE
Q 047435 461 FRSSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 461 ~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
... .+ .++.... .++..+.|++.|++.++|+||||.|++ ++.++|++++||+|.++
T Consensus 82 ~~~--~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 82 TGS--TE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HSC--CC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEEC
T ss_pred hcc--CC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEee
Confidence 122 22 3444322 378999999999999999999998853 67789999999998653
No 22
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.35 E-value=2.1e-06 Score=79.33 Aligned_cols=128 Identities=11% Similarity=0.076 Sum_probs=83.1
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccccc---------chhhhhhhHHHHHHHHHhhccC-CC-
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQS---------EYDCERHLDEIAINEFITNNIS-NA- 616 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~---------~~~~~~~~d~~~i~~~~~~~~~-~~- 616 (724)
.++|++++-|.++.+.|+++|.++|++.+.+++++++.+...... ..+..++..++.++++...... +.
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 84 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAP 84 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 579999999999999999999999999999999999986421110 0011123334556666554322 12
Q ss_pred ceEEEEEEecChHHHHHHHHh-hc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 617 CVACRQVIAKNTTEVIDVIRR-MD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 617 ~v~y~e~~v~~~~~~~~~i~~-~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
++++. +..|+ ..+.|.+ .+ .++||+|+|+++.. ++.+| -+|...+.+.. .++++||||.
T Consensus 85 ~~~~~---~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~----~~~~pVlvV~ 146 (146)
T 3s3t_A 85 NLKTE---ISYGI-PKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVD----HAPCNVIVIR 146 (146)
T ss_dssp CCEEE---EEEEC-HHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHH----HCSSEEEEEC
T ss_pred ceEEE---EecCC-hHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhc----cCCCCEEEeC
Confidence 33322 22332 3333333 33 67999999988542 22222 48999999986 4668999984
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.24 E-value=1.7e-06 Score=91.24 Aligned_cols=144 Identities=12% Similarity=0.028 Sum_probs=88.4
Q ss_pred ceeEEEEeeccCC-------hHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHH
Q 047435 385 ELRIFCGVHFEGN-------IRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAA 457 (724)
Q Consensus 385 elrILvcv~~~~~-------~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af 457 (724)
.-|||+|++..+. ....++.+..++........++++|+++..........+.. ..+.......++..+.+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 233 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDF--DPNLYNNALRGQHLIAM 233 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTC--CHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcc--cHHHHHHHHHHHHHHHH
Confidence 4689999999884 46666666665543200257999999986543211100100 00000111223334445
Q ss_pred HHhhhcCCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcc-cchhHHHHHhhcCCCceEEEecCC
Q 047435 458 EKQFRSSDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTT-NLQNFDMNIQAHAPCTVGLLVDKS 535 (724)
Q Consensus 458 ~~~~~~~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~-~~~~~~~~Vl~~ApCsVgilVdrg 535 (724)
+.+.+..... .++.... .++..+.|++.|+++++|||+||.|++.. ..+ .+|++.++|++++||+|.++-.++
T Consensus 234 ~~~~~~~~~~-~~~~~v~---~g~~~~~I~~~a~~~~~dLiV~G~~g~~~-~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 234 KELRQKFSIP-EEKTHVK---EGLPEQVIPQVCEELNAGIVVLGILGRTG-LSAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHHTTCC-GGGEEEE---ESCHHHHHHHHHHHTTEEEEEEECCSCCS-THHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHHhCCC-cccEEEe---cCCcHHHHHHHHHHhCCCEEEEeccCccC-CccccccHHHHHHHhhCCCCEEEECCCC
Confidence 5554433111 1222222 26889999999999999999999998764 112 789999999999999988774444
No 24
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.22 E-value=4.2e-06 Score=77.26 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=79.7
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccc----------ccc---chhhhhhhHHHHHHHHHhhcc-C
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIED----------EQS---EYDCERHLDEIAINEFITNNI-S 614 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~----------~~~---~~~~~~~~d~~~i~~~~~~~~-~ 614 (724)
++|++++-|.++.+.|+++|.++|++.+.+++++++.+... ... ..+..++..++.++++..... .
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999985311 000 011112233445555544321 1
Q ss_pred CCce---EEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccE
Q 047435 615 NACV---ACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSV 689 (724)
Q Consensus 615 ~~~v---~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~sv 689 (724)
+.++ .+. +..| +..+.|.+.+ .++||+|+|+++.. ++.+ --+|...+.+.. .++++|
T Consensus 83 g~~~~~~~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~----~~~~pV 144 (147)
T 3hgm_A 83 GVPADKVRAF---VKGG-RPSRTIVRFARKRECDLVVIGAQGTN------GDKS----LLLGSVAQRVAG----SAHCPV 144 (147)
T ss_dssp TCCGGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEECSSCTT------CCSC----CCCCHHHHHHHH----HCSSCE
T ss_pred CCCccceEEE---EecC-CHHHHHHHHHHHhCCCEEEEeCCCCc------cccc----eeeccHHHHHHh----hCCCCE
Confidence 2122 322 2233 2333333333 47999999988642 2222 248999999997 456899
Q ss_pred EEE
Q 047435 690 LVI 692 (724)
Q Consensus 690 Lvv 692 (724)
|||
T Consensus 145 lvV 147 (147)
T 3hgm_A 145 LVV 147 (147)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
No 25
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.21 E-value=2.9e-06 Score=88.48 Aligned_cols=119 Identities=12% Similarity=0.002 Sum_probs=85.9
Q ss_pred CceeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhc
Q 047435 384 SELRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRS 463 (724)
Q Consensus 384 ~elrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 463 (724)
..-|||+|++..+.....++.+..++.. ....++++|+.+... .++.++.+.++.+.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~---------------------~~~~l~~~~~~l~~ 225 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGD---------------------KTADLRVMEEVIGA 225 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSC---------------------CHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCch---------------------HHHHHHHHHHHHHH
Confidence 3468999999999888888888887654 235799999976432 11223333333222
Q ss_pred CCCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCCCCcc-cchhHHHHHhhcCCCceEEE
Q 047435 464 SDVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQGRTT-NLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 464 ~~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~-~~~~~~~~Vl~~ApCsVgil 531 (724)
. ++.++.... .++..+.|++.|++.++|||+||.+++.. ..+ .+|++.++|++++||+|.++
T Consensus 226 ~--~~~~~~~~~---~g~~~~~I~~~a~~~~~dLlV~G~~~~~~-~~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 226 E--GIEVHVHIE---SGTPHKAILAKREEINATTIFMGSRGAGS-VMTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp T--TCCEEEEEE---CSCHHHHHHHHHHHTTCSEEEEECCCCSC-HHHHHHHCHHHHHHHHCSSCEEEE
T ss_pred c--CCcEEEEEe---cCCHHHHHHHHHHhcCcCEEEEeCCCCCC-ccceeeCcHHHHHHhcCCCCEEEE
Confidence 2 344444322 37999999999999999999999998764 112 68999999999999998765
No 26
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.21 E-value=7.8e-06 Score=74.67 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=81.3
Q ss_pred eEEEEeecCCcchHHHHHHHHHHh-cCCCeEEEEEEEeecccccc--------chhhhh-hhHHHHHHHHHhhccC-CCc
Q 047435 549 YSLVVLFLGGADDREALALVSRMS-GHPGLSITVFRITVIEDEQS--------EYDCER-HLDEIAINEFITNNIS-NAC 617 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma-~~~~~~ltv~r~~~~~~~~~--------~~~~~~-~~d~~~i~~~~~~~~~-~~~ 617 (724)
++|++++-|.++.+.|+++|.++| +..+.+++++|+.+...... ..+..+ +..++.++++...... +.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 589999999999999999999999 99999999999986421110 000111 2234455555554321 223
Q ss_pred eEEEEEEecChHHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 618 VACRQVIAKNTTEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 618 v~y~e~~v~~~~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
++ . .+..|+ ..+.|.+.++++||+|+|+++.. ++.+| +|...+.+.. .++++||||.
T Consensus 82 ~~--~-~v~~g~-~~~~I~~~a~~~dliV~G~~~~~------~~~~~-----~Gs~~~~vl~----~~~~pVlvv~ 138 (138)
T 3idf_A 82 PF--V-VIKEGE-PVEMVLEEAKDYNLLIIGSSENS------FLNKI-----FASHQDDFIQ----KAPIPVLIVK 138 (138)
T ss_dssp CE--E-EEEESC-HHHHHHHHHTTCSEEEEECCTTS------TTSSC-----CCCTTCHHHH----HCSSCEEEEC
T ss_pred eE--E-EEecCC-hHHHHHHHHhcCCEEEEeCCCcc------hHHHH-----hCcHHHHHHh----cCCCCEEEeC
Confidence 33 2 233342 34444444559999999998542 23232 2888888886 4568999983
No 27
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.19 E-value=6e-06 Score=75.89 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=79.2
Q ss_pred eEEEEeecCCcc--hHHHHHHHHHHhcCCCeEEEEEEEeecccc---------c--cchhhhhhhHHHHHHHHHhhccC-
Q 047435 549 YSLVVLFLGGAD--DREALALVSRMSGHPGLSITVFRITVIEDE---------Q--SEYDCERHLDEIAINEFITNNIS- 614 (724)
Q Consensus 549 ~~I~v~f~GG~d--dreAL~~a~rma~~~~~~ltv~r~~~~~~~---------~--~~~~~~~~~d~~~i~~~~~~~~~- 614 (724)
++|++++-|.++ .+.|+++|.++|++.+++++++|+.+.... . +..+...+...+.++++..+...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999 999999999999999999999999853110 0 00011111222334444444321
Q ss_pred CCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEE
Q 047435 615 NACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVI 692 (724)
Q Consensus 615 ~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvv 692 (724)
..++.+. +..| +..+.|.+.+ .++||+|+|++++ |+.+ .-+|...+.+.. .++++||||
T Consensus 82 ~~~v~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~-------~~~~----~~~Gs~~~~v~~----~~~~pVlvv 142 (143)
T 3fdx_A 82 EDRMHFH---VAEG-SPKDKILALAKSLPADLVIIASHRP-------DITT----YLLGSNAAAVVR----HAECSVLVV 142 (143)
T ss_dssp GGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEEESSCT-------TCCS----CSSCHHHHHHHH----HCSSEEEEE
T ss_pred CCceEEE---EEec-ChHHHHHHHHHHhCCCEEEEeCCCC-------CCee----eeeccHHHHHHH----hCCCCEEEe
Confidence 1234332 2233 2334444343 3799999999842 3333 258999999997 466899998
Q ss_pred E
Q 047435 693 Q 693 (724)
Q Consensus 693 q 693 (724)
.
T Consensus 143 ~ 143 (143)
T 3fdx_A 143 R 143 (143)
T ss_dssp C
T ss_pred C
Confidence 3
No 28
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.16 E-value=3.3e-06 Score=79.41 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=82.4
Q ss_pred ceEEEEeecC-CcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhcc-CCCceEEEEEEe
Q 047435 548 TYSLVVLFLG-GADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNI-SNACVACRQVIA 625 (724)
Q Consensus 548 ~~~I~v~f~G-G~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~-~~~~v~y~e~~v 625 (724)
.++|++++-| .+..+.|+++|.++|+..+++++++++.+.....+ +..++..++.++++..... .+..+... ..+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~g~~~~~~-~~v 100 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK--DEDIIEAKETLSWAVSIIRKEGAEGEEH-LLV 100 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC--HHHHHHHHHHHHHHHHHHHHTTCCEEEE-EEE
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc--HHHHHHHHHHHHHHHHHHHhcCCCceEE-EEe
Confidence 4689999999 99999999999999999999999999986422111 1122223344555444321 12233322 224
Q ss_pred cChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 626 KNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 626 ~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
..|+ ..+.|.+.+ .++||+|+|+++.. ++.+ --+|...+.+.. .++++||||+
T Consensus 101 ~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~----~a~~PVLvVr 155 (155)
T 3dlo_A 101 RGKE-PPDDIVDFADEVDAIAIVIGIRKRS------PTGK----LIFGSVARDVIL----KANKPVICIK 155 (155)
T ss_dssp SSSC-HHHHHHHHHHHTTCSEEEEECCEEC------TTSC----EECCHHHHHHHH----HCSSCEEEEC
T ss_pred cCCC-HHHHHHHHHHHcCCCEEEECCCCCC------CCCC----EEeccHHHHHHH----hCCCCEEEeC
Confidence 4442 333343333 37999999988531 2222 248999999997 4668999984
No 29
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.15 E-value=6.6e-06 Score=75.20 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=79.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccc--c---cc--hhhhhhhHHHHHHHHHhhccCCC-ceEE
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDE--Q---SE--YDCERHLDEIAINEFITNNISNA-CVAC 620 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~--~---~~--~~~~~~~d~~~i~~~~~~~~~~~-~v~y 620 (724)
++|++++-|.++++.|+++|.++|+..+.+++++++.+.... . .+ .+..++..++.++++..+. +. ++++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~~ 80 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT--GVPKEDA 80 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH--CCCGGGE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc--CCCccEE
Confidence 589999999999999999999999999999999998853110 0 00 0111223345566665542 22 3333
Q ss_pred EEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 621 RQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 621 ~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
. +..| +..+.|.+.+ .++||+|+|+++.. ++.+ --+|...+.+.. .++++||||.
T Consensus 81 ~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~----~~~~pVlvv~ 137 (137)
T 2z08_A 81 L---LLEG-VPAEAILQAARAEKADLIVMGTRGLG------ALGS----LFLGSQSQRVVA----EAPCPVLLVR 137 (137)
T ss_dssp E---EEES-SHHHHHHHHHHHTTCSEEEEESSCTT------CCSC----SSSCHHHHHHHH----HCSSCEEEEC
T ss_pred E---EEec-CHHHHHHHHHHHcCCCEEEECCCCCc------hhhh----hhhccHHHHHHh----cCCCCEEEeC
Confidence 2 2223 2333333333 47999999988642 2222 248999999997 4668999984
No 30
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.12 E-value=2e-05 Score=74.10 Aligned_cols=130 Identities=11% Similarity=0.025 Sum_probs=82.5
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecc-----c--cc--------cch--------hhhhhhHHHH
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIE-----D--EQ--------SEY--------DCERHLDEIA 604 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~-----~--~~--------~~~--------~~~~~~d~~~ 604 (724)
.++|++++-|.++.+.|+++|.++|+..+.+++++++.+.. . .. ..+ +..++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999998642 1 00 000 0001222345
Q ss_pred HHHHHhhcc-CCCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCC
Q 047435 605 INEFITNNI-SNACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVD 681 (724)
Q Consensus 605 i~~~~~~~~-~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d 681 (724)
++++..... .+.++.+. +..| +..+.|.+.+ .++||+|+|+++.. ++.+| -+|.+.+.+...
T Consensus 85 l~~~~~~~~~~g~~~~~~---v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~- 149 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDI---IVVG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK- 149 (162)
T ss_dssp HHHHHHHHHHTTCEEEEE---EEEE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCceEEE---EcCC-CHHHHHHHHHHHcCCCEEEEcCCCCC------Cccce----EecchHHHHHHh-
Confidence 555544321 12233322 2233 2333333333 47999999998542 33332 489999999974
Q ss_pred CCCCcccEEEEEec
Q 047435 682 FCKGMTSVLVIQCG 695 (724)
Q Consensus 682 ~~~~~~svLvvqq~ 695 (724)
++++||||...
T Consensus 150 ---~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 ---SNKPVLVVKRK 160 (162)
T ss_dssp ---CCSCEEEECCC
T ss_pred ---CCCCEEEEeCC
Confidence 56899999753
No 31
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.10 E-value=1.2e-05 Score=74.61 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=79.8
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccc-------------ccchhhhhhhHHHHHHHHHhhccC
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDE-------------QSEYDCERHLDEIAINEFITNNIS 614 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~-------------~~~~~~~~~~d~~~i~~~~~~~~~ 614 (724)
.++|++++-|.++.+.|+++|.++|++.+.+++++++.+.... .+..+..++..++.++++..+...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4699999999999999999999999999999999999853110 000112223344556666555421
Q ss_pred CCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEE
Q 047435 615 NACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVI 692 (724)
Q Consensus 615 ~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvv 692 (724)
. .+.. .+..| +..+.|.+.+ .++||+|+|+++.. + |. --+|...+.+.. .++++||||
T Consensus 86 ~-~~~~---~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~---~~--~~~Gs~~~~vl~----~~~~pVlvv 145 (150)
T 3tnj_A 86 D-PAHR---WLVWG-EPREEIIRIAEQENVDLIVVGSHGRH------G---LA--LLLGSTANSVLH----YAKCDVLAV 145 (150)
T ss_dssp C-GGGE---EEEES-CHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHH----HCSSEEEEE
T ss_pred C-cceE---EEecC-CHHHHHHHHHHHcCCCEEEEecCCCC------C---cC--eEecchHHHHHH----hCCCCEEEE
Confidence 2 1221 12223 2233333333 47999999988542 2 22 358999999986 466899999
Q ss_pred Eec
Q 047435 693 QCG 695 (724)
Q Consensus 693 qq~ 695 (724)
...
T Consensus 146 ~~~ 148 (150)
T 3tnj_A 146 RLR 148 (150)
T ss_dssp ECC
T ss_pred eCC
Confidence 864
No 32
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.09 E-value=2.5e-05 Score=74.16 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=82.8
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeecccc------c---------c--c-hhhhhhhHHHHHHHHH
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDE------Q---------S--E-YDCERHLDEIAINEFI 609 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~------~---------~--~-~~~~~~~d~~~i~~~~ 609 (724)
.++|++++-|.++.+.|+++|.++|+..+.+++++++.+.... . + + .+..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999998853211 0 0 0 0111222334555554
Q ss_pred hhcc-CCCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCc
Q 047435 610 TNNI-SNACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGM 686 (724)
Q Consensus 610 ~~~~-~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~ 686 (724)
.... .+.+++... .+..| +..+.|.+.+ .++||+|+|+++.. ++.+ --+|...+.+.. .++
T Consensus 85 ~~~~~~g~~~~~~~-~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~------~~~~----~~~Gsv~~~vl~----~~~ 148 (170)
T 2dum_A 85 EEVKRAFRAKNVRT-IIRFG-IPWDEIVKVAEEENVSLIILPSRGKL------SLSH----EFLGSTVMRVLR----KTK 148 (170)
T ss_dssp HHHHHHTTCSEEEE-EEEEE-CHHHHHHHHHHHTTCSEEEEESCCCC------C--T----TCCCHHHHHHHH----HCS
T ss_pred HHHHHcCCceeeee-EEecC-ChHHHHHHHHHHcCCCEEEECCCCCC------cccc----ceechHHHHHHH----hCC
Confidence 4321 122344311 22233 2333343333 47999999998542 2222 248999999986 466
Q ss_pred ccEEEEEec
Q 047435 687 TSVLVIQCG 695 (724)
Q Consensus 687 ~svLvvqq~ 695 (724)
++||||...
T Consensus 149 ~PVlvv~~~ 157 (170)
T 2dum_A 149 KPVLIIKEV 157 (170)
T ss_dssp SCEEEECCC
T ss_pred CCEEEEccC
Confidence 899999754
No 33
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.01 E-value=1.3e-05 Score=84.20 Aligned_cols=131 Identities=9% Similarity=-0.027 Sum_probs=85.1
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHH-HHHHHHHhhhcC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYR-IMHAAEKQFRSS 464 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~-i~~af~~~~~~~ 464 (724)
-|||+|++..+.....++.+..++... ...++++|+++..... +. ......+ ..+..++ +-+.++.+.+..
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~-~~-~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 243 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEASRR--NVDLVALHAWSDVDVS-EW-PGIDWPA----TQSMAEQVLAERLAGWQERY 243 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHHHT--TCCEEEEEESCSSCCT-TC-SSCCHHH----HHHHHHHHHHHHHTTHHHHC
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHhc--CCEEEEEEEeeccccc-CC-CcccHHH----HHHHHHHHHHHHHHHHHhhC
Confidence 489999999988888888888777543 3579999998743221 00 0000000 0011122 222333333221
Q ss_pred CCCeEEEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC-CCcccchhHHHHHhhcCCCceEEE
Q 047435 465 DVPFTILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ-GRTTNLQNFDMNIQAHAPCTVGLL 531 (724)
Q Consensus 465 ~~~v~v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~-g~~~~~~~~~~~Vl~~ApCsVgil 531 (724)
.++.++.... .++..+.|++.|+ ++|+|+||.|++.. .+. .+|++.++|++++||+|.++
T Consensus 244 -~~~~~~~~~~---~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~-l~Gsv~~~vl~~~~~pVlvv 304 (309)
T 3cis_A 244 -PNVAITRVVV---RDQPARQLVQRSE--EAQLVVVGSRGRGGYAGM-LVGSVGETVAQLARTPVIVA 304 (309)
T ss_dssp -TTSCEEEEEE---SSCHHHHHHHHHT--TCSEEEEESSCSSCCTTC-SSCHHHHHHHHHCSSCEEEE
T ss_pred -CCCcEEEEEE---cCCHHHHHHHhhC--CCCEEEECCCCCCCcccc-ccCcHHHHHHhcCCCCEEEe
Confidence 2445554432 3789999999997 89999999998764 221 68999999999999998765
No 34
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.00 E-value=1.7e-05 Score=75.12 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=80.8
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEE--EEeecccc--c-----cc-hhhhhhhHHHHHHHHHhhccC-CC
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVF--RITVIEDE--Q-----SE-YDCERHLDEIAINEFITNNIS-NA 616 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~--r~~~~~~~--~-----~~-~~~~~~~d~~~i~~~~~~~~~-~~ 616 (724)
.++|++++-|.+..+.|+++|.++|+ .+.+++++ ++++.... . ++ .+..++..++.++++...... +.
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv 95 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA 95 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999 99999999 87643110 0 00 011122234556665544321 22
Q ss_pred c-eEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 617 C-VACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 617 ~-v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
+ +.+. +..|+ ..+.|.+.+ .++||+|+|+++.. ++.+| -+|.+.+.+.. .++++||||.
T Consensus 96 ~~v~~~---v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~----~a~~PVlvV~ 157 (163)
T 1tq8_A 96 KNVEER---PIVGA-PVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSR----RAKVDVLIVH 157 (163)
T ss_dssp CEEEEE---EECSS-HHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHH----HTTCEEEEEC
T ss_pred CeEEEE---EecCC-HHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHH----hCCCCEEEEe
Confidence 2 3332 33342 333443332 67999999998542 23332 48999999997 4668999997
Q ss_pred ecc
Q 047435 694 CGI 696 (724)
Q Consensus 694 q~~ 696 (724)
...
T Consensus 158 ~~~ 160 (163)
T 1tq8_A 158 TTE 160 (163)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 35
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.95 E-value=3.6e-05 Score=70.43 Aligned_cols=124 Identities=10% Similarity=0.069 Sum_probs=78.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeec-cc-ccc--c------hhhhhhhHHHHHHHHHhhccCCCce
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVI-ED-EQS--E------YDCERHLDEIAINEFITNNISNACV 618 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~-~~-~~~--~------~~~~~~~d~~~i~~~~~~~~~~~~v 618 (724)
++|++++-|.++++.|+++|.++|+..+.+++++++.+. .. ... . .+..++.-++.++++..+.. .++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 80 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVD--YPI 80 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSS--SCC
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcC--CCc
Confidence 589999999999999999999999999999999998842 11 000 0 00111223455666655532 122
Q ss_pred EEEEEEecCh---HHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEEec
Q 047435 619 ACRQVIAKNT---TEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQCG 695 (724)
Q Consensus 619 ~y~e~~v~~~---~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvqq~ 695 (724)
. +..+..| +++.+..+ ..++||+|+|++ .. ++. .+|...+.+.. .++++||||...
T Consensus 81 ~--~~~~~~g~~~~~I~~~a~--~~~~dliV~G~~-~~------~~~------~lgs~~~~vl~----~~~~pVlvv~~~ 139 (141)
T 1jmv_A 81 S--EKLSGSGDLGQVLSDAIE--QYDVDLLVTGHH-QD------FWS------KLMSSTRQVMN----TIKIDMLVVPLR 139 (141)
T ss_dssp C--CEEEEEECHHHHHHHHHH--HTTCCEEEEEEC-CC------CHH------HHHHHHHHHHT----TCCSEEEEEECC
T ss_pred e--EEEEecCCHHHHHHHHHH--hcCCCEEEEeCC-Cc------hhh------hhcchHHHHHh----cCCCCEEEeeCC
Confidence 1 1122223 23333333 256999999988 42 111 26888888886 467999999754
No 36
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.93 E-value=1.1e-05 Score=75.48 Aligned_cols=128 Identities=18% Similarity=0.201 Sum_probs=80.9
Q ss_pred ceEEEEeec--CCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccc-------cchhhhhhhHHHHHHHHHhhccC-CC-
Q 047435 548 TYSLVVLFL--GGADDREALALVSRMSGHPGLSITVFRITVIEDEQ-------SEYDCERHLDEIAINEFITNNIS-NA- 616 (724)
Q Consensus 548 ~~~I~v~f~--GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~-~~- 616 (724)
.++|++++- |.++.+.|+++|.++|+..+++++++++.+..... +..+..++..++.++++...... +.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 94 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVN 94 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 569999999 99999999999999999999999999998642110 00011222334555555443211 11
Q ss_pred ceEEEEEEecChHHHHHHHHhh---cCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccEEEEE
Q 047435 617 CVACRQVIAKNTTEVIDVIRRM---DGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSVLVIQ 693 (724)
Q Consensus 617 ~v~y~e~~v~~~~~~~~~i~~~---~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~svLvvq 693 (724)
++.+. +..+|+ ..+.|.+. +.++||+|+|+++.. .|. . -+|...+.+.. .++++||||.
T Consensus 95 ~~~~~--v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~----~a~~PVlvV~ 156 (156)
T 3fg9_A 95 QVEPL--VYEGGD-VDDVILEQVIPEFKPDLLVTGADTEF---------PHS-K-IAGAIGPRLAR----KAPISVIVVR 156 (156)
T ss_dssp SEEEE--EEECSC-HHHHHHHTHHHHHCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHH----HCSSEEEEEC
T ss_pred ceEEE--EEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCC---------ccc-e-eecchHHHHHH----hCCCCEEEeC
Confidence 23322 222232 33333333 367999999998542 221 2 48999999996 4668999984
No 37
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.80 E-value=0.00011 Score=67.04 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=62.0
Q ss_pred ceEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEe-ec---cc-------c-ccc-hhhhhhhHHHHHHHHHhh---
Q 047435 548 TYSLVVLFLGGADDREALALVSRMSGHPGLSITVFRIT-VI---ED-------E-QSE-YDCERHLDEIAINEFITN--- 611 (724)
Q Consensus 548 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~-~~---~~-------~-~~~-~~~~~~~d~~~i~~~~~~--- 611 (724)
.++|++++-|.++.+.|+++|.++|+..+.+++++++. +. .. . +++ .+..++..++.++++ ..
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 82 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT 82 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh
Confidence 46999999999999999999999999999999999988 52 00 0 000 011112233455555 43
Q ss_pred ccCCCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccC
Q 047435 612 NISNACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKR 651 (724)
Q Consensus 612 ~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~ 651 (724)
...+ ++++. +..|+ ..+.|.+.+ .++||+|+|+++
T Consensus 83 ~~~~-~~~~~---~~~g~-~~~~I~~~a~~~~~dliV~G~~g 119 (138)
T 1q77_A 83 GSTE-IPGVE---YRIGP-LSEEVKKFVEGKGYELVVWACYP 119 (138)
T ss_dssp SCCC-CCCEE---EECSC-HHHHHHHHHTTSCCSEEEECSCC
T ss_pred ccCC-cceEE---EEcCC-HHHHHHHHHHhcCCCEEEEeCCC
Confidence 1222 44433 33442 334444444 379999999874
No 38
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.62 E-value=0.00025 Score=67.55 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=76.0
Q ss_pred ceEEEEeecCCc---------chHHHHHHHHHHh-cC--CCeEEEEEEEeeccccc---------cchh------hhhhh
Q 047435 548 TYSLVVLFLGGA---------DDREALALVSRMS-GH--PGLSITVFRITVIEDEQ---------SEYD------CERHL 600 (724)
Q Consensus 548 ~~~I~v~f~GG~---------ddreAL~~a~rma-~~--~~~~ltv~r~~~~~~~~---------~~~~------~~~~~ 600 (724)
.++|++++-|.+ ..+.|+++|.+++ +. .+.+++++|+.+..... ..++ ..++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 479999999999 8899999999986 44 68999999987421100 0000 01112
Q ss_pred HHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc--CCccEEEEcccCCCCchhhhccccccCCcccchhhhhhh
Q 047435 601 DEIAINEFITNNISNACVACRQVIAKNTTEVIDVIRRMD--GYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLA 678 (724)
Q Consensus 601 d~~~i~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~la 678 (724)
.++.++++...... ..+.+.-. +..|. ..+.|.+.+ .++||+|+|+++.. ++.+| -+|.+.+.+.
T Consensus 85 ~~~~l~~~~~~~~~-~g~~~~~~-v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~------~~~~~----~~Gsva~~vl 151 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE-IGVGCEAW-IKTGD-PKDVICQEVKRVRPDFLVVGSRGLG------RFQKV----FVGTVSAFCV 151 (175)
T ss_dssp HHHHHHHHHHHHHH-HTCEEEEE-EEESC-HHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCceEEE-EecCC-HHHHHHHHHHHhCCCEEEEeCCCCC------hhhhh----hcCchHHHHH
Confidence 23456665543211 12333222 22332 333333333 37999999988542 23332 4899999999
Q ss_pred cCCCCCCcccEEEEEecc
Q 047435 679 SVDFCKGMTSVLVIQCGI 696 (724)
Q Consensus 679 s~d~~~~~~svLvvqq~~ 696 (724)
.. ++++||||....
T Consensus 152 ~~----a~~pVlvv~~~~ 165 (175)
T 2gm3_A 152 KH----AECPVMTIKRNA 165 (175)
T ss_dssp HH----CSSCEEEEECCG
T ss_pred hC----CCCCEEEEcCCc
Confidence 74 668999998653
No 39
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.53 E-value=0.056 Score=57.06 Aligned_cols=105 Identities=15% Similarity=0.074 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHhhhH---HHHHHHHHHH-HHHHHHHHHHHHhhhcCCCcchhHHHHHhhhhhccc
Q 047435 30 NTLSTLSGVYFIFIISVKMDTVKILRAAKH---TWFITIACLV-IPYMIAMFLSRILSDYTPGVERGLFRLYFTSLLSMT 105 (724)
Q Consensus 30 ~~l~~iGl~~~lF~~Gle~d~~~l~~~~k~---~~~i~~~~~l-ip~~~g~~~~~~l~~~~~~~~~~~l~l~~~~~~s~T 105 (724)
+.....++.+.||..|++++.+.+++..++ ........++ .|+ ++++++..+... +....-.++++++=+.+
T Consensus 42 ~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl-l~~~l~~~~~l~---~~~~~Glil~~~~P~~~ 117 (332)
T 3zux_A 42 GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA-TAWCLSKLLNLP---AEIAVGVILVGCCPGGT 117 (332)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH-HHHHHHHHTTCC---HHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHhCCC---hHHHHHHHHHhcCCchh
Confidence 344567888999999999999999865443 3333334443 343 455555555321 11111111012222233
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 047435 106 YFSTVADAVSELKLLTSELGQLAMSSSMLAELLGWIALMA 145 (724)
Q Consensus 106 s~~vv~~iL~el~ll~s~~G~lals~a~i~D~~~~ill~i 145 (724)
+..+.++ + .+.+. .++++...++.+++.+.+-+
T Consensus 118 ~s~v~t~----~--a~Gd~-~la~~~~~~stll~~~~~Pl 150 (332)
T 3zux_A 118 ASNVMTY----L--ARGNV-ALSVAVTSVSTLTSPLLTPA 150 (332)
T ss_dssp HHHHHHH----H--TTCCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----H--hCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333322 1 23333 56777788888888877766
No 40
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.50 E-value=0.00013 Score=74.49 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=82.8
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccc-----------cc--------hhhhhhhHHHHHHHHHh
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQ-----------SE--------YDCERHLDEIAINEFIT 610 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~-----------~~--------~~~~~~~d~~~i~~~~~ 610 (724)
+|++++-|.+.++.|+++|.++|++.+++++++++.+..... ++ .+..++..++.++++..
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQ 81 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999987531100 00 00111222345555544
Q ss_pred hcc-CCCceEEEEEEecChHHHHHHHHhhcCCccEEEEcccCCCCchhhhccccccCCcccchhhhhhhcCCCCCCcccE
Q 047435 611 NNI-SNACVACRQVIAKNTTEVIDVIRRMDGYYNLVIVGKKRAVTSRLEEEMKLWVEYEELGVIGDTLASVDFCKGMTSV 689 (724)
Q Consensus 611 ~~~-~~~~v~y~e~~v~~~~~~~~~i~~~~~~~dLvivGr~~~~~s~~~~gl~~W~e~~eLG~igd~las~d~~~~~~sv 689 (724)
... .+.++++. +..|. ..+.|.+.+.++||+|+|+++... ++.+ .-+|...+.+.. .++++|
T Consensus 82 ~~~~~g~~~~~~---~~~g~-~~~~I~~~~~~~dliV~G~~g~~~-----~~~~----~~~Gs~~~~v~~----~a~~PV 144 (268)
T 3ab8_A 82 SALAAGVAVEAV---LEEGV-PHEAILRRARAADLLVLGRSGEAH-----GDGF----GGLGSTADRVLR----ASPVPV 144 (268)
T ss_dssp HHHHTTCCEEEE---EEEEC-HHHHHHHHHTTCSEEEEESSCTTS-----CTTC----CSCCHHHHHHHH----HCSSCE
T ss_pred HHHhCCCCeEEE---EecCC-HHHHHHhhccCCCEEEEeccCCCc-----cccc----cccchhHHHHHH----hCCCCE
Confidence 321 12234332 22342 334444447889999999885310 1222 248999999996 466899
Q ss_pred EEEEecc
Q 047435 690 LVIQCGI 696 (724)
Q Consensus 690 Lvvqq~~ 696 (724)
|||....
T Consensus 145 lvv~~~~ 151 (268)
T 3ab8_A 145 LLAPGEP 151 (268)
T ss_dssp EEECSSC
T ss_pred EEECCCC
Confidence 9998653
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.32 E-value=0.055 Score=55.01 Aligned_cols=220 Identities=9% Similarity=0.028 Sum_probs=137.8
Q ss_pred eeEEEEeeccCChHHHHHHHHHhCCCCCCCcEEEEEEEeeecCCCccccccchhhhhhcccccchHHHHHHHHHhhhcCC
Q 047435 386 LRIFCGVHFEGNIRSIVALLKACNPCETSPMCVYLVHLIELVGRASPVLAPYNAQKLRLIREDSTYRIMHAAEKQFRSSD 465 (724)
Q Consensus 386 lrILvcv~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 465 (724)
-.|||++.+|..-..++.++..+...+. .+.+.++..-. +.+.+ .++ +++++.|-++.
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~-~~~~l----------------~~q-l~~l~~~l~~r- 78 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNT-DKENL----------------LSQ-LPSISEGFQEE- 78 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC----CTTCH----------------HHH-HHHHHHHHHHT-
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCC-CccHH----------------HHH-HHHHHHHHHhC-
Confidence 4799999999999999999999987653 67777774221 11100 122 25555555433
Q ss_pred CCeEEEEeEEEcCCCChHHHHHHHHHhc-----CCCEEEeccccCCCCCcccchhHHHHHhhcCCCceEEEecCCCCCCC
Q 047435 466 VPFTILPYKMIAPYDTMHESICELVKEK-----FIPLVVLPFNKKRQGRTTNLQNFDMNIQAHAPCTVGLLVDKSSTTGH 540 (724)
Q Consensus 466 ~~v~v~~~~~vs~~~~m~~~I~~~A~e~-----~~~lIIlp~h~~~~g~~~~~~~~~~~Vl~~ApCsVgilVdrg~~~~~ 540 (724)
+ +..++++....+..+++..+.+.. +.+.|++||..+.. +...+..+++...+. --.|.++-+.....
T Consensus 79 -~--v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-~~~~y~~~i~~~~~~-~~nVlil~~~~~~~-- 151 (294)
T 3g40_A 79 -G--VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-RDEEIREIIRKASMY-RMGVLLFSKHPQAG-- 151 (294)
T ss_dssp -T--CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-GHHHHHHHHHHHHHT-TCEEEEEECCTTTT--
T ss_pred -C--ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-hhHHHHHHHHHHHHh-CceEEEEecCCccC--
Confidence 2 667777777789999999998887 45899999976653 101577777775444 55655553322111
Q ss_pred ccccCCcceEEEEeecC--------C--cchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHh
Q 047435 541 FYSIGHFTYSLVVLFLG--------G--ADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFIT 610 (724)
Q Consensus 541 ~~~~~~~~~~I~v~f~G--------G--~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~ 610 (724)
....++|=+=..| | .+-.-++-+|-.+.++.++++.++.++++ +.+++.-++.++++.+
T Consensus 152 ----fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d-------e~a~~~a~~~l~~Lv~ 220 (294)
T 3g40_A 152 ----LGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT-------AIQAQAAENFLQSLAE 220 (294)
T ss_dssp ----TTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-------HHHHHHHHHHHHHHHH
T ss_pred ----CCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-------HHHHHHHHHHHHHHHH
Confidence 1112444443222 2 34566888999999999999999999875 4555556778888877
Q ss_pred hccCCCceEEEEEEecChHHHHHHHHhhcCCccEEEEcccCC
Q 047435 611 NNISNACVACRQVIAKNTTEVIDVIRRMDGYYNLVIVGKKRA 652 (724)
Q Consensus 611 ~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~dLvivGr~~~ 652 (724)
..- -++++. +|. .+..+.+++. .+-||+++|=..+
T Consensus 221 ~~R--i~a~~~--vv~--~~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 221 LAR--IPNVKM--QVL--RENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp HHT--CCSCEE--EEE--SSCTTTSSSC-CCCSEEEEECCSS
T ss_pred Hhc--CCceEE--Eec--CchHHHHhhC-cCCCEEEEcCCCC
Confidence 642 122222 232 3466777774 6799999998764
No 42
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=73.92 E-value=8.6 Score=38.43 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEE--EEe---cChHH
Q 047435 558 GADDREALALVSRMSGHPGL--SITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQ--VIA---KNTTE 630 (724)
Q Consensus 558 G~ddreAL~~a~rma~~~~~--~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e--~~v---~~~~~ 630 (724)
.|.|.+|++.|.|+++. +. .++++-+-+.+ .++.+++..... -+++...+ ... .+...
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------a~~~lr~ala~G--aD~vi~v~~d~~~~~~~~~~~ 100 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ------------AAETLRTALAMG--ADRAILVVAADDVQQDIEPLA 100 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG------------GHHHHHHHHHHT--CSEEEEEECCSSTTCCCCHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------HHHHHHHHHhcC--CCEEEEEecChhhcccCCHHH
Confidence 48999999999999987 55 88888764321 112233332222 23444333 111 13444
Q ss_pred HHHHHHhhc--CCccEEEEcccCC-----CCchhhhccccc
Q 047435 631 VIDVIRRMD--GYYNLVIVGKKRA-----VTSRLEEEMKLW 664 (724)
Q Consensus 631 ~~~~i~~~~--~~~dLvivGr~~~-----~~s~~~~gl~~W 664 (724)
+..++.+.. .+||+++.|++.. .-.|+...+.+|
T Consensus 101 ~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 101 VAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 555554442 4699999999873 345777777787
No 43
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=73.59 E-value=8.4 Score=38.58 Aligned_cols=92 Identities=13% Similarity=0.134 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEE--EEe---cChHH
Q 047435 558 GADDREALALVSRMSGHPGL--SITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQ--VIA---KNTTE 630 (724)
Q Consensus 558 G~ddreAL~~a~rma~~~~~--~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e--~~v---~~~~~ 630 (724)
.|.|.+|++.|.|+++. +. .++++.+-+.+ .++.+++..... -+++...+ ... .+...
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------a~~~lr~ala~G--aD~vi~v~~d~~~~~~~~~~~ 103 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------------CQETIRTALAMG--ADRGIHVEVPPAEAERLGPLQ 103 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT------------HHHHHHHHHHHT--CSEEEEEECCHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh------------HHHHHHHHHhcC--CCEEEEEecChhhcccCCHHH
Confidence 48999999999999977 55 88888764321 112333332222 23444333 111 12344
Q ss_pred HHHHHHhhc--CCccEEEEcccCC-----CCchhhhccccc
Q 047435 631 VIDVIRRMD--GYYNLVIVGKKRA-----VTSRLEEEMKLW 664 (724)
Q Consensus 631 ~~~~i~~~~--~~~dLvivGr~~~-----~~s~~~~gl~~W 664 (724)
+..+|.+.. .+||+++.|++.. .-.|....+.+|
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 444544442 4699999999873 345777777787
No 44
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=71.66 E-value=6 Score=39.87 Aligned_cols=93 Identities=10% Similarity=0.054 Sum_probs=55.0
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEE-e--cChHHHH
Q 047435 558 GADDREALALVSRMSGHPGL--SITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVI-A--KNTTEVI 632 (724)
Q Consensus 558 G~ddreAL~~a~rma~~~~~--~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~-v--~~~~~~~ 632 (724)
.|.|.+|++.|.|+++..+. .++++.+-+.+ .++.+++..... -+++...+-- . .+...+.
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~~------------~~~~lr~ala~G--aD~vi~v~d~~~~~~~~~~~a 101 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR------------VDESLRKCLAKG--ADRAVRVWDDAAEGSDAIVVG 101 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG------------GHHHHHHHHHTT--CSEEEEECCGGGTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh------------HHHHHHHHHhcC--CCEEEEEcCcccccCCHHHHH
Confidence 48999999999999876554 88888754320 112333332222 2344333210 0 1234444
Q ss_pred HHHHhhc--CCccEEEEcccCC-----CCchhhhccccc
Q 047435 633 DVIRRMD--GYYNLVIVGKKRA-----VTSRLEEEMKLW 664 (724)
Q Consensus 633 ~~i~~~~--~~~dLvivGr~~~-----~~s~~~~gl~~W 664 (724)
.+|.+.. .+||+|+.|++.. .-.|....+.+|
T Consensus 102 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 102 RILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 5554442 3699999999873 245777777777
No 45
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=70.77 E-value=59 Score=33.64 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=55.9
Q ss_pred HHHHhhcCCCCChhhHHHHHHhhhhhhhhhHHHHHHhcccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 047435 222 LIVGLIVPAGPPLGSALVEKCDFVISNILLPFFYLRIGLLTNVHSIKNF-KSFAALETILVGAYVGKLVGSLCTVLFFGT 300 (724)
Q Consensus 222 FlaGl~~~~~~p~~~~l~ekl~~~~~~~flPlFF~~~G~~~d~~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 300 (724)
.++|...|.... . ++.. ....+++-+...|++++...+... ..+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~---~----~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFK---W----AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTG---G----GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhh---h----hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 367777776422 1 2233 245667778889999999887631 234444455556667777788888888776
Q ss_pred ChhHHHHHHHHh---hhhhhHHHHhhhh
Q 047435 301 SLRFGILFSFIL---NVKGINEFMLLNR 325 (724)
Q Consensus 301 ~~~~~~~lg~~m---~~kG~~~l~~~~~ 325 (724)
+... ..|+++ +|-|....+....
T Consensus 100 ~~~~--~~Glil~~~~P~~~~s~v~t~~ 125 (332)
T 3zux_A 100 PAEI--AVGVILVGCCPGGTASNVMTYL 125 (332)
T ss_dssp CHHH--HHHHHHHHHSCCCTHHHHHHHH
T ss_pred ChHH--HHHHHHHhcCCchhHHHHHHHH
Confidence 6543 334332 3445555544443
No 46
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=48.39 E-value=22 Score=36.85 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=37.6
Q ss_pred EEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhc
Q 047435 550 SLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNN 612 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~ 612 (724)
+++|.|.||+|+--.|.++.+.....+..+.++++-.. .+-..+.++++++.+++
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg--------~~~~et~~~v~~~~~~~ 102 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR--------WKFQEMYRFRDQMVEEM 102 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS--------CCCHHHHHHHHHHHHTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC--------CCCHHHHHHHHHHHHHc
Confidence 78999999999999999999887644455666764211 11112456777777765
No 47
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=45.19 E-value=78 Score=32.29 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=54.5
Q ss_pred eEEEEeecCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHh
Q 047435 549 YSLVVLFLGGADDREALALVSRMS-G-----------------HPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFIT 610 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma-~-----------------~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~ 610 (724)
.+++|-|.||+|+--.|.++.+.. + .++..+.++.+-.. .+...+.++++++.+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg--------~~fpet~~fv~~~~~ 125 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQE--------ETFPTLENFVLETSE 125 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCT--------TCCHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCC--------CCCHHHHHHHHHHHH
Confidence 379999999999999999888763 1 13455667764221 222335577888877
Q ss_pred hccCCCceEEEEEEe-----cChHHHHHHHHhhcCCccEEEEcccCCC
Q 047435 611 NNISNACVACRQVIA-----KNTTEVIDVIRRMDGYYNLVIVGKKRAV 653 (724)
Q Consensus 611 ~~~~~~~v~y~e~~v-----~~~~~~~~~i~~~~~~~dLvivGr~~~~ 653 (724)
++. +....... ..-.+......+.....+.+++|.|++.
T Consensus 126 ~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 126 RYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 652 22211111 1112222223333445789999999875
No 48
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=40.53 E-value=49 Score=27.66 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHhcCCCEEEeccccCCCCCc----ccchhHHHHHhhcCCCceEEEecC
Q 047435 480 DTMHESICELVKEKFIPLVVLPFNKKRQGRT----TNLQNFDMNIQAHAPCTVGLLVDK 534 (724)
Q Consensus 480 ~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~----~~~~~~~~~Vl~~ApCsVgilVdr 534 (724)
....+.|.++++|++++.||+|.-++.+|+. ...+.+.+++-++ +.+|- ++|-
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~-~~DE 93 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVE-LWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEE-EECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEE-EECC
Confidence 3446789999999999999999877655332 1567888887777 88874 5553
No 49
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=38.94 E-value=29 Score=35.58 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=50.4
Q ss_pred EEEEeecCCcchHHHHHHHHHHh--------c----------CCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhh
Q 047435 550 SLVVLFLGGADDREALALVSRMS--------G----------HPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITN 611 (724)
Q Consensus 550 ~I~v~f~GG~ddreAL~~a~rma--------~----------~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~ 611 (724)
++++.|.||+|+--.|.++.+.- + .|...+.|+.+=. . .+-....++++++.++
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDT---G-----~~FpET~ef~d~~~~~ 131 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDH---D-----DTFKTLENFIEETSLR 131 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCC---T-----TCCHHHHHHHHHHHHH
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeC---C-----CCCHHHHHHHHHHHHH
Confidence 69999999999999999987741 1 1234566666311 1 1111134677777776
Q ss_pred ccCCCceEEEEEEecC---hHHHHHHHHhhcCCccEEEEcccCC
Q 047435 612 NISNACVACRQVIAKN---TTEVIDVIRRMDGYYNLVIVGKKRA 652 (724)
Q Consensus 612 ~~~~~~v~y~e~~v~~---~~~~~~~i~~~~~~~dLvivGr~~~ 652 (724)
+. -++. ...... -.+...-+++....+|.+|.|.||+
T Consensus 132 yg--L~L~--v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 132 YS--LSLY--ESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp TT--EEEE--ECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred hC--CcEE--EeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 52 1221 100110 1122333445555799999999997
No 50
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=27.51 E-value=1.2e+02 Score=32.38 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=58.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcC-CCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEe-c
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGH-PGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIA-K 626 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~-~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v-~ 626 (724)
.+|+|.+.||+|.--.|.++.++.+. .+.++.++++-.... .+.+.|.+.++++-.+.. -+.......+ .
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr------~~s~~~~~~v~~~~~~lg--i~~~v~~~~~~~ 85 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS------ANADAWVTHCENVCQQWQ--VPLVVERVQLAQ 85 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC------SSHHHHHHHHHHHHHHTT--CCEEEECCCCCC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC------cccHHHHHHHHHHHHHcC--CcEEEEEecCCC
Confidence 58999999999999999999998877 888999999642211 112224566777766652 2222111111 1
Q ss_pred ---ChHHHH-----HHHHhhcCCccEEEEcccCC
Q 047435 627 ---NTTEVI-----DVIRRMDGYYNLVIVGKKRA 652 (724)
Q Consensus 627 ---~~~~~~-----~~i~~~~~~~dLvivGr~~~ 652 (724)
+-++.. ..+.+.+.++|.++.|-+.+
T Consensus 86 ~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 86 EGLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp SSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 112222 23345555689888887543
No 51
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=26.35 E-value=93 Score=31.72 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=40.9
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcCCCeE-EEEEEEeeccccccchhhhhhhHHHHHHHHHhhc
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGHPGLS-ITVFRITVIEDEQSEYDCERHLDEIAINEFITNN 612 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~-ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~ 612 (724)
.+|+|.+.||+|.--.|.++.+..+..+.. +.++++-.... .+...|.+.++++..+.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r------~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR------ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS------THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC------cccHHHHHHHHHHHHHc
Confidence 589999999999999999999887766777 88887632211 11223456677766654
No 52
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.50 E-value=91 Score=25.53 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHH
Q 047435 559 ADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIAKNTTEVIDVIR 636 (724)
Q Consensus 559 ~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~ 636 (724)
-||.||.+-|.|..+..++.+-++-. + .++..-+++-.|.+.+. |.-+.|.+.+|....+.
T Consensus 58 vddkewaekairfvkslgaqvliiiy--d--------qdqnrleefsrevrrrg-------fevrtvtspddfkksle 118 (134)
T 2l69_A 58 VDDKEWAEKAIRFVKSLGAQVLIIIY--D--------QDQNRLEEFSREVRRRG-------FEVRTVTSPDDFKKSLE 118 (134)
T ss_dssp CSSHHHHHHHHHHHHHHCCCCEEEEE--C--------SCHHHHHHHHHHHHHTT-------CCEEEESSHHHHHHHHH
T ss_pred EccHHHHHHHHHHHHhcCCeEEEEEE--e--------CchhHHHHHHHHHHhcC-------ceEEEecChHHHHHHHH
Confidence 58999999999998887776555441 1 12222345556665542 33456777777655443
No 53
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=24.88 E-value=79 Score=34.32 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=43.6
Q ss_pred eEEEEeecCCcchHHHHHHHHHHhcCCCeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhc
Q 047435 549 YSLVVLFLGGADDREALALVSRMSGHPGLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNN 612 (724)
Q Consensus 549 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~ 612 (724)
.+|+|.+.||+|.--.|.++.++.+..+.++.++|+-.... ..+...|.+.++++-.+.
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr-----g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR-----GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC-----THHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC-----ccccHHHHHHHHHHHHHc
Confidence 57999999999999999999998887788888888643211 022233567777777665
No 54
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=23.43 E-value=94 Score=31.44 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=14.9
Q ss_pred eEEEEeecC--C-cchHHHHHHHHHHhcCCCeEEEEEE
Q 047435 549 YSLVVLFLG--G-ADDREALALVSRMSGHPGLSITVFR 583 (724)
Q Consensus 549 ~~I~v~f~G--G-~ddreAL~~a~rma~~~~~~ltv~r 583 (724)
+++++++.- | .+.++.++-+.+.-+..++.+++..
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~ 46 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILH 46 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEE
Confidence 466666554 2 2223333333333333355555543
No 55
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=23.11 E-value=1.3e+02 Score=26.74 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHhcCCCEEEeccccCCCCCcc----cchhHHHHHhhcCCCceEEEecC
Q 047435 480 DTMHESICELVKEKFIPLVVLPFNKKRQGRTT----NLQNFDMNIQAHAPCTVGLLVDK 534 (724)
Q Consensus 480 ~~m~~~I~~~A~e~~~~lIIlp~h~~~~g~~~----~~~~~~~~Vl~~ApCsVgilVdr 534 (724)
....+.|.++++|++++.||+|..++.+|+.. ..+.+.+++-++-+.+|- ++|-
T Consensus 39 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~-~~DE 96 (138)
T 1nu0_A 39 TPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVK-LHDE 96 (138)
T ss_dssp EECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEE-EEEE
T ss_pred chHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEE-EEcC
Confidence 34478999999999999999998776654431 356777777666678874 5554
No 56
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=22.01 E-value=1.1e+02 Score=27.79 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=32.3
Q ss_pred EEEeEEEcCCCChHHHHHHHHHhcCCCEEEeccccCCC
Q 047435 470 ILPYKMIAPYDTMHESICELVKEKFIPLVVLPFNKKRQ 507 (724)
Q Consensus 470 v~~~~~vs~~~~m~~~I~~~A~e~~~~lIIlp~h~~~~ 507 (724)
..-...+-|..+|+..|.++|++-++|+||-|...+..
T Consensus 90 ~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 90 AALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDI 127 (153)
T ss_dssp EEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCC
T ss_pred cCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcC
Confidence 34555678899999999999999999999999976653
No 57
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.83 E-value=1.9e+02 Score=28.90 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=27.1
Q ss_pred eEEEEeecCCc---chHHHHHHHHHHhcCCCeEEEEEEEeec
Q 047435 549 YSLVVLFLGGA---DDREALALVSRMSGHPGLSITVFRITVI 587 (724)
Q Consensus 549 ~~I~v~f~GG~---ddreAL~~a~rma~~~~~~ltv~r~~~~ 587 (724)
.+..++|.||+ |+.+...+|+++.++ ++.++++.|-..
T Consensus 107 ~~rIIlf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG~~ 147 (268)
T 4b4t_W 107 HQRIVAFVCSPISDSRDELIRLAKTLKKN-NVAVDIINFGEI 147 (268)
T ss_dssp EEEEEEEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEESSC
T ss_pred ceEEEEEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeCCC
Confidence 34455677765 556777777777765 899999998643
No 58
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=20.04 E-value=2.4e+02 Score=29.01 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCC-CeEEEEEEEeeccccccchhhhhhhHHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhcC
Q 047435 562 REALALVSRMSGHP-GLSITVFRITVIEDEQSEYDCERHLDEIAINEFITNNISNACVACRQVIAKNTTEVIDVIRRMDG 640 (724)
Q Consensus 562 reAL~~a~rma~~~-~~~ltv~r~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~ 640 (724)
+.-.++|..+|++. .-++|+++ +.+-. .....+..+..+|+.+++ ..|.|.+..|++. ..+.+++ -+
T Consensus 147 eRiar~AF~~A~~r~rkkvt~v~---KaNvl---k~t~glf~~~~~eva~ey---p~I~~~~~~vD~~--~m~lv~~-P~ 214 (333)
T 1x0l_A 147 ERIGRAALRIAEGRPRKTLHIAH---KANVL---PLTQGLFLDTVKEVAKDF---PLVNVQDIIVDNC--AMQLVMR-PE 214 (333)
T ss_dssp HHHHHHHHHHHHTSTTCEEEEEE---CTTTC---TTHHHHHHHHHHHHHTTC---TTSEEEEEEHHHH--HHHHHHC-GG
T ss_pred HHHHHHHHHHHHhcCCCeEEEEe---cCccc---hhhhHHHHHHHHHHHHHC---CCceEEEEEHHHH--HHHHhhC-cc
Confidence 34455666667554 56899988 31111 112234556677776654 3589999998755 4566664 46
Q ss_pred CccEEEEcccCC-CCchhhhccc
Q 047435 641 YYNLVIVGKKRA-VTSRLEEEMK 662 (724)
Q Consensus 641 ~~dLvivGr~~~-~~s~~~~gl~ 662 (724)
+||.++-.---| .-|-+.+++.
T Consensus 215 ~FDVivt~NlfGDIlSD~aa~l~ 237 (333)
T 1x0l_A 215 RFDVIVTTNLLGDILSDLAAGLV 237 (333)
T ss_dssp GCSEEEECHHHHHHHHHHHHHHT
T ss_pred cceEEEEcCccchhHhHHHHhhc
Confidence 799666543322 2344444443
Done!