BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047437
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 122/198 (61%), Gaps = 5/198 (2%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFD 86
+ T TNNCP T+WPGTL G PQL TGF+L S S + + WSGR W RT CS D
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 87 EFGVGSCQTGDCG-GRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
G +C+T DCG G++ C+G+GA PPA+L EIT+ +D+YDVS+VDG+NLP+ P
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
+G G C + C +++N CP LQ I+CKSAC AFG +YCC+
Sbjct: 121 QGGTGECKPSSCPANVNKVCPAPLQ----VKAADGSVISCKSACLAFGDSKYCCTPPNNT 176
Query: 206 PTTCRPSFYSSIFKRACP 223
P TC P+ YS IF++ CP
Sbjct: 177 PETCPPTEYSEIFEKQCP 194
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 118/198 (59%), Gaps = 5/198 (2%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFD 86
+T + NNCPY +WPGTL PQL TTGF+L S S ++ + W+GR WARTGCS D
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 87 EFGVGSCQTGDCG-GRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
G C T DC G++ C+G+GA PPA+L E + G +DFYDVS+VDG+NLP+ P
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
+G G C C +++N CP ELQ +AC SAC FG QYCC+
Sbjct: 121 QGGTGDCKTASCPANVNAVCPSELQ----KKGSDGSVVACLSACVKFGTPQYCCTPPQNT 176
Query: 206 PTTCRPSFYSSIFKRACP 223
P TC P+ YS IF ACP
Sbjct: 177 PETCPPTNYSEIFHNACP 194
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 109/198 (55%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGW-SGRIWARTGCSF 85
+ FT+ N CP+T+W ++ G G QL G+S RI + G + RIWARTGC F
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGG-------GRQLNRGESWRITAPAGTTAARIWARTGCKF 53
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D G GSC+TGDCGG LQC G G P +L E L + N+ DF+D+S++DG+N+P+ P
Sbjct: 54 DASGRGSCRTGDCGGVLQCTGYGRA-PNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLP 112
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
G G CA D+N CP EL+ C +AC F D+YCC G AN
Sbjct: 113 DGGSGCSRGPRCAVDVNARCPAELRQDG----------VCNNACPVFKKDEYCCVGSAAN 162
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ YS FK CP
Sbjct: 163 --DCHPTNYSRYFKGQCP 178
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/198 (42%), Positives = 102/198 (51%), Gaps = 27/198 (13%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C YT+W + G G QL GQS I G +G RIW RTGCSF
Sbjct: 1 ATFEIVNRCSYTVWAAAVPGGGR--------QLNQGQSWTINVNAGTTGGRIWGRTGCSF 52
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D G G CQTGDCGG L C G PP +L E L + N+ DF+D+S+VDG+N+P+ P
Sbjct: 53 DGSGRGRCQTGDCGGVLSCTAYG-NPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSP 111
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
G C CA+DIN CP L+ C + C F DQYCC N
Sbjct: 112 --TSGGCRGIRCAADINGQCPGALKAPG----------GCNNPCTVFKTDQYCC-----N 154
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ YS FKR CP
Sbjct: 155 SGACSPTDYSQFFKRNCP 172
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 108/199 (54%), Gaps = 25/199 (12%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWS-GRIWARTGCSF 85
+T + NNCPYT+W + G G +L+ GQ+ I + G R+W RT C+F
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGG-------GRRLDRGQTWVINAPRGTKMARVWGRTNCNF 53
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
+ G G+CQTGDCGG LQC G G PP +L E L + + DF+D+S+VDG+N+P+ P
Sbjct: 54 NAAGRGTCQTGDCGGVLQCTGWGK-PPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAP 112
Query: 146 RGVYGA-CNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFA 204
G C+A C ++IN CP+EL+ C + C FG QYCC+
Sbjct: 113 TNPSGGKCHAIHCTANINGECPRELRVPG----------GCNNPCTTFGGQQYCCTQG-- 160
Query: 205 NPTTCRPSFYSSIFKRACP 223
C P+F+S FK+ CP
Sbjct: 161 ---PCGPTFFSKFFKQRCP 176
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 103/198 (52%), Gaps = 29/198 (14%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWS-GRIWARTGCSF 85
+TF I N C YT+W G G +L+SGQS I PG + RIW RT C+F
Sbjct: 1 ATFDILNKCTYTVWAAASPGGGR--------RLDSGQSWTITVNPGTTNARIWGRTSCTF 52
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D G G C+TGDC G L+C G G+ PP +L E L + N+ D+ D+S+VDG+N+P+
Sbjct: 53 DANGRGKCETGDCNGLLECQGYGS-PPNTLAEFALNQPNNLDYIDISLVDGFNIPM---- 107
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
+ C C+ DIN CP EL+ C + C F ++YCC+
Sbjct: 108 --DFSGCRGIQCSVDINGQCPSELKAPG----------GCNNPCTVFKTNEYCCTD---G 152
Query: 206 PTTCRPSFYSSIFKRACP 223
P +C P+ YS FK CP
Sbjct: 153 PGSCGPTTYSKFFKDRCP 170
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 107/199 (53%), Gaps = 25/199 (12%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWS-GRIWARTGCSF 85
+T + NNCPYT+W + G G +L GQ+ I + G RIW RTGC+F
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGG-------GRRLNRGQTWVINAPRGTKMARIWGRTGCNF 53
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
+ G G+CQTGDCGG LQC G G PP +L E L + ++ DF+D+S+VDG+N+P+ P
Sbjct: 54 NAAGRGTCQTGDCGGVLQCTGWGK-PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAP 112
Query: 146 -RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFA 204
+ G C+A C ++IN CP+ L+ C + C FG QYCC+
Sbjct: 113 TKPSGGKCHAIHCTANINGECPRALKVPG----------GCNNPCTTFGGQQYCCTQG-- 160
Query: 205 NPTTCRPSFYSSIFKRACP 223
C P+ S FK+ CP
Sbjct: 161 ---PCGPTELSKFFKKRCP 176
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 105/198 (53%), Gaps = 25/198 (12%)
Query: 28 TFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWS-GRIWARTGCSFD 86
F + NNCPYT+W + TP + G +LE GQS + PG RIW RT C+FD
Sbjct: 3 VFEVHNNCPYTVW-----AAATP--VGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFD 55
Query: 87 EFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP- 145
G G CQTGDCGG L+C G G PP +L E L + ++ DF+D+S++DG+N+P+ P
Sbjct: 56 GAGRGWCQTGDCGGVLECKGWGK-PPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPT 114
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
+ G C+ C ++IN CP L+ C + C FG QYCC+
Sbjct: 115 KPGPGKCHGIQCTANINGECPGSLRVPG----------GCNNPCTTFGGQQYCCT----- 159
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ S FK+ CP
Sbjct: 160 QGPCGPTELSRWFKQRCP 177
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 100/198 (50%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C YT+W A G L G QL SG+S I PG G +IWART C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D+ G G C+TGDCGG LQC G PP +L E +L + KD+ D+S + G+N+P+ P
Sbjct: 59 DDSGRGICRTGDCGGLLQCKRFG-RPPTTLAEFSLNQ-YGKDYIDISNIKGFNVPMDFSP 116
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
C CA+DI CP +L+ C AC F +YCC+
Sbjct: 117 --TTRGCRGVRCAADIVGQCPAKLKAPGG---------GCNDACTVFQTSEYCCT----- 160
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ YS FKR CP
Sbjct: 161 TGKCGPTEYSRFFKRLCP 178
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 101/198 (51%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C YT+W A G L G QL SG+S I PG +G +IWART C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D+ G G C+TGDCGG L+C G PP +L E +L + KD+ D+S + G+N+P+ P
Sbjct: 59 DDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQ-YGKDYIDISNIKGFNVPMNFSP 116
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
C CA+DI CP +L+ C AC F +YCC+
Sbjct: 117 --TTRGCRGVRCAADIVGQCPAKLKAPGG---------GCNDACTVFQTSEYCCT----- 160
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ YS FKR CP
Sbjct: 161 TGKCGPTEYSRFFKRLCP 178
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 101/198 (51%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C YT+W A G L G QL SG+S I PG +G +IWART C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D+ G G C+TGDCGG L+C G PP +L E +L + KD+ D+S + G+N+P+ P
Sbjct: 59 DDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQ-YGKDYIDISNIKGFNVPMNFSP 116
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
C CA+DI CP +L+ C AC F +YCC+
Sbjct: 117 --TTRGCRGVRCAADIVGQCPAKLKAPGG---------GCNDACTVFQTSEYCCT----- 160
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ YS FKR CP
Sbjct: 161 TGKCGPTEYSRFFKRLCP 178
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 101/198 (51%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C YT+W A G L G QL SG+S I PG +G +IWART C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D+ G G C+TGDCGG L+C G PP +L E +L + KD+ D+S + G+N+P+ P
Sbjct: 59 DDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQ-YGKDYIDISNIKGFNVPMDFSP 116
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
C CA+DI CP +L+ C AC F +YCC+
Sbjct: 117 --TTRGCRGVRCAADIVGQCPAKLKAPGG---------GCNDACTVFQTSEYCCT----- 160
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ YS FKR CP
Sbjct: 161 TGKCGPTEYSRFFKRLCP 178
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 100/198 (50%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C YT+W A G L G QL SG+S I PG G +IWART C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D+ G G C+TGDCGG L+C G PP +L E +L + KD+ D+S + G+N+P+ P
Sbjct: 59 DDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQ-YGKDYIDISNIKGFNVPMDFSP 116
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
C CA+DI CP +L+ C AC F +YCC+
Sbjct: 117 --TTRGCRGVRCAADIVGQCPAKLKAPGG---------GCNDACTVFQTSEYCCT----- 160
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ YS FKR CP
Sbjct: 161 TGKCGPTEYSRFFKRLCP 178
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 100/198 (50%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C YT+W A G L G QL SG+S I PG +G +IWART C F
Sbjct: 1 ATFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D+ G G C+TGDCGG L+C G PP +L E +L + KD+ D+S + G+N+P+ P
Sbjct: 59 DDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQXG-KDYIDISNIKGFNVPMNFSP 116
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
C CA+DI CP +L+ C AC F +YCC+
Sbjct: 117 --TTRGCRGVRCAADIVGQCPAKLKAPGG---------GCNDACTVFQTSEYCCT----- 160
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ S FKR CP
Sbjct: 161 TGKCGPTEXSRFFKRLCP 178
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 98/198 (49%), Gaps = 21/198 (10%)
Query: 27 STFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSG-RIWARTGCSF 85
+TF I N C T+W A G L G QL SG+S I PG +G +IWART C F
Sbjct: 1 ATFEIVNRCSXTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 86 DEFGVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEP 145
D+ G G C+TGDCGG L+C G PP +L E +L + KD D+S + G+N+P+ P
Sbjct: 59 DDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQXG-KDXIDISNIKGFNVPMNFSP 116
Query: 146 RGVYGACNATGCASDINMGCPKELQXXXXXXXXXXXXIACKSACEAFGLDQYCCSGEFAN 205
C CA+DI CP +L+ C AC F +YCC+
Sbjct: 117 --TTRGCRGVRCAADIVGQCPAKLKAPGG---------GCNDACTVFQTSEYCCT----- 160
Query: 206 PTTCRPSFYSSIFKRACP 223
C P+ S FKR CP
Sbjct: 161 TGKCGPTEXSRFFKRLCP 178
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 29 FTITNNCPYTIWPGT---LAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSF 85
TITN C +T+WP LA G G +L G S + + S IW RTGCSF
Sbjct: 3 LTITNRCHFTVWPAVALVLAQGGG------GTELHPGASWSLDTPVIGSQYIWGRTGCSF 56
Query: 86 DEFGVGSCQTGDCGG-RLQCDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPL 141
D G G CQTGDCGG L C G+ A P ++ E+++ +GN + S + G+N+P+
Sbjct: 57 DRAGKGRCQTGDCGGSSLTCGGNPAV-PTTMAEVSVLQGN-YTYGVTSTLKGFNVPM 111
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 43 TLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFG 89
T+A GT L+ L+SG +RIP P GRI G DE G
Sbjct: 110 TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERG 156
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 43 TLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFG 89
T+A GT L+ L+SG +RIP P GRI G DE G
Sbjct: 64 TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERG 110
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 43 TLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFG 89
T+A GT L+ L+SG +RIP P GRI G DE G
Sbjct: 62 TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERG 108
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 43 TLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFG 89
T+A GT L+ L+SG +RIP P GRI G DE G
Sbjct: 52 TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERG 98
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 43 TLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFG 89
T+A GT L+ L+SG +RIP P GRI G DE G
Sbjct: 64 TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERG 110
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 43 TLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFG 89
T+A GT L+ L+SG +RIP P GRI G DE G
Sbjct: 64 TIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERG 110
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 43 TLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFG 89
T+A GT L+ L+SG ++IP P GRI G DE G
Sbjct: 60 TIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERG 106
>pdb|1GV9|A Chain A, P58ERGIC-53
Length = 260
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 41 PGTLAGSGT-PQLLTTGFQLESGQSVRI-PSVPGWSGRIWARTGCSFDEFGVGSCQTGDC 98
P + GT P G + S +RI PS+ G +W +T +F+ + V
Sbjct: 39 PHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTG 98
Query: 99 GGRLQCDG 106
GR+ DG
Sbjct: 99 RGRIGADG 106
>pdb|1R1Z|A Chain A, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
pdb|1R1Z|B Chain B, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
pdb|1R1Z|C Chain C, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
pdb|1R1Z|D Chain D, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
Length = 263
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 41 PGTLAGSGT-PQLLTTGFQLESGQSVRI-PSVPGWSGRIWARTGCSFDEFGVGSCQTGDC 98
P + GT P G + S +RI PS+ G +W +T +F+ + V
Sbjct: 42 PHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTG 101
Query: 99 GGRLQCDG 106
GR+ DG
Sbjct: 102 RGRIGADG 109
>pdb|3T4W|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|C Chain C, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|D Chain D, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
Length = 432
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 48 GTPQLLTTGFQLESGQS-VRIPSVPGWSGRIWARTGCSFDE--FGVGSCQTGDCG 99
GT L +L+ + V P PGW GR W + D G G C G
Sbjct: 14 GTENLYFQSMKLQDLEVIVTAPPAPGWGGRYWILVKLTTDTGIVGWGECYAASVG 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,744,434
Number of Sequences: 62578
Number of extensions: 284928
Number of successful extensions: 525
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 32
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)