Query 047437
Match_columns 223
No_of_seqs 152 out of 693
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 8.1E-78 1.8E-82 520.4 17.9 192 28-223 1-192 (219)
2 smart00205 THN Thaumatin famil 100.0 5.6E-75 1.2E-79 502.6 16.6 189 29-223 1-190 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 1.3E-72 2.8E-77 489.8 16.5 187 29-223 1-197 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.6E-68 3.5E-73 461.5 7.7 185 33-223 1-185 (213)
5 cd09215 Thaumatin-like the swe 100.0 8.1E-51 1.8E-55 336.3 14.0 147 29-187 1-148 (157)
6 cd09217 TLP-P thaumatin and al 100.0 3.2E-47 6.9E-52 313.3 13.6 140 29-187 1-141 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 3.6E-46 7.8E-51 307.6 14.0 145 29-187 1-145 (153)
8 PF04681 Bys1: Blastomyces yea 97.9 0.00013 2.9E-09 60.6 10.7 47 111-159 72-121 (155)
9 cd09216 GH64-LPHase-like glyco 95.1 0.11 2.5E-06 48.5 8.4 110 28-147 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 90.1 0.96 2.1E-05 42.7 6.9 79 61-147 62-146 (369)
11 cd09214 GH64-like glycosyl hyd 71.5 3.6 7.7E-05 38.1 2.9 32 114-147 124-155 (319)
12 PF06282 DUF1036: Protein of u 57.3 17 0.00037 28.5 3.9 42 26-67 3-44 (115)
13 PF11142 DUF2917: Protein of u 48.2 20 0.00044 25.2 2.7 23 57-79 2-29 (63)
14 PF07172 GRP: Glycine rich pro 45.8 14 0.0003 28.3 1.7 24 6-29 5-28 (95)
15 PF01847 VHL: von Hippel-Linda 44.6 26 0.00057 29.3 3.3 48 25-78 13-60 (156)
16 PHA03094 dUTPase; Provisional 42.8 26 0.00057 28.5 3.0 29 55-83 34-68 (144)
17 cd05468 pVHL von Hippel-Landau 42.0 49 0.0011 26.8 4.5 49 26-80 8-56 (141)
18 PF00947 Pico_P2A: Picornaviru 35.9 14 0.0003 30.0 0.3 38 89-132 83-120 (127)
19 PF05991 NYN_YacP: YacP-like N 32.7 14 0.00031 30.6 -0.0 10 133-142 2-11 (166)
20 PF08194 DIM: DIM protein; In 28.9 58 0.0013 20.8 2.3 12 24-35 21-32 (36)
21 cd07557 trimeric_dUTPase Trime 28.6 73 0.0016 23.0 3.2 28 56-83 13-46 (92)
22 PRK09918 putative fimbrial cha 27.9 2E+02 0.0044 25.0 6.3 44 26-69 41-90 (230)
23 PF01356 A_amylase_inhib: Alph 27.7 80 0.0017 22.9 3.1 38 28-68 16-53 (68)
24 PF14874 PapD-like: Flagellar- 25.3 1.5E+02 0.0032 21.6 4.4 48 22-69 19-69 (102)
25 cd00407 Urease_beta Urease bet 25.3 1.4E+02 0.0031 23.3 4.3 58 22-79 17-92 (101)
26 PF05726 Pirin_C: Pirin C-term 24.8 70 0.0015 24.1 2.6 26 57-82 4-29 (104)
27 TIGR00192 urease_beta urease, 24.5 1.5E+02 0.0032 23.2 4.3 58 22-79 17-92 (101)
28 PRK02958 tatA twin arginine tr 24.0 81 0.0018 23.2 2.6 20 1-20 1-20 (73)
29 PRK00720 tatA twin arginine tr 23.3 85 0.0018 23.4 2.6 20 1-20 1-20 (78)
30 PRK15211 fimbrial chaperone pr 23.2 2.8E+02 0.0061 24.3 6.4 45 25-69 38-89 (229)
31 PRK02710 plastocyanin; Provisi 22.8 2.8E+02 0.0061 21.4 5.7 15 55-69 47-61 (119)
32 PRK04561 tatA twin arginine tr 22.2 93 0.002 23.0 2.6 20 1-20 1-20 (75)
33 COG3121 FimC P pilus assembly 21.7 3.4E+02 0.0073 23.7 6.6 45 25-69 43-95 (235)
34 TIGR02656 cyanin_plasto plasto 20.9 3.1E+02 0.0066 20.3 5.4 21 56-78 61-81 (99)
35 PF10633 NPCBM_assoc: NPCBM-as 20.3 1.4E+02 0.003 21.0 3.2 17 24-40 6-22 (78)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=8.1e-78 Score=520.36 Aligned_cols=192 Identities=58% Similarity=1.193 Sum_probs=184.3
Q ss_pred EEEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCCCceeEeeeccCCCCCCCCcccccCCCCCccccCCC
Q 047437 28 TFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFGVGSCQTGDCGGRLQCDGS 107 (223)
Q Consensus 28 t~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~ 107 (223)
+|||+|||+||||||+++++|++++..+||+|+||++++|++|++|+|||||||+|+||+.|+++|+||||+|+++|++.
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~ 80 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGA 80 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCC
Confidence 59999999999999999999999998899999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCceeEEEEecCCCCCceeeeecccccCcceeeeecCCCCCCCCCCccCcccCCCCccccccCCCCCCCCceeecCc
Q 047437 108 GATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRGVYGACNATGCASDINMGCPKELQVVGGEGTREGEVIACKS 187 (223)
Q Consensus 108 g~~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~~C~~~~C~~dl~~~CP~~l~v~~~~~~~~g~vv~C~S 187 (223)
+++||+|||||+|+..+++|||||||||||||||+|+|+++.+.|+.++|.+|||+.||.||||+++ +|+||||||
T Consensus 81 ~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~----~g~vv~C~S 156 (219)
T cd09218 81 GGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNS----GGRVVACKS 156 (219)
T ss_pred CCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccC----CCcEeeecC
Confidence 8899999999999876789999999999999999999987666899999999999999999999864 488999999
Q ss_pred hhhhhCCCCcccCCCCCCCCCCCCChhHHHHHhhCC
Q 047437 188 ACEAFGLDQYCCSGEFANPTTCRPSFYSSIFKRACP 223 (223)
Q Consensus 188 aC~~~~~~~~CC~G~~~~p~~C~pt~ys~~FK~~CP 223 (223)
||++|++|||||||+|++|++|+|++||++||++||
T Consensus 157 aC~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP 192 (219)
T cd09218 157 ACLAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACP 192 (219)
T ss_pred HHHhhCCccceecCCCCCCCcCCCcchhHHHHhhCc
Confidence 999999999999999999999999999999999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=5.6e-75 Score=502.56 Aligned_cols=189 Identities=56% Similarity=1.135 Sum_probs=181.1
Q ss_pred EEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCCCc-eeEeeeccCCCCCCCCcccccCCCCCccccCCC
Q 047437 29 FTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWS-GRIWARTGCSFDEFGVGSCQTGDCGGRLQCDGS 107 (223)
Q Consensus 29 ~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~Ws-GriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~ 107 (223)
|||+|||+|||||+++++ |+++|..+||+|+||++++|.+|++|+ |||||||+|++|++|+++|+||||+|+++|++.
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~ 79 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGW 79 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCC
Confidence 799999999999999998 999888899999999999999999996 999999999999999999999999999999988
Q ss_pred CCCCCceeEEEEecCCCCCceeeeecccccCcceeeeecCCCCCCCCCCccCcccCCCCccccccCCCCCCCCceeecCc
Q 047437 108 GATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRGVYGACNATGCASDINMGCPKELQVVGGEGTREGEVIACKS 187 (223)
Q Consensus 108 g~~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~~C~~~~C~~dl~~~CP~~l~v~~~~~~~~g~vv~C~S 187 (223)
+++||+|||||+|+..+++|||||||||||||||+|.|+++.+.|+.++|.+|||..||+||||++ +|+||||||
T Consensus 80 gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~-----~g~vv~C~S 154 (218)
T smart00205 80 GGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPG-----GGSVVACNS 154 (218)
T ss_pred CCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHcccc-----CCccccccc
Confidence 889999999999987778999999999999999999998766779999999999999999999984 478999999
Q ss_pred hhhhhCCCCcccCCCCCCCCCCCCChhHHHHHhhCC
Q 047437 188 ACEAFGLDQYCCSGEFANPTTCRPSFYSSIFKRACP 223 (223)
Q Consensus 188 aC~~~~~~~~CC~G~~~~p~~C~pt~ys~~FK~~CP 223 (223)
||++|++|||||||+|++|++|+|++||++||++||
T Consensus 155 aC~~f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP 190 (218)
T smart00205 155 ACTVFGTDQYCCTGGQNNPETCPPTNYSRIFKNACP 190 (218)
T ss_pred HhhccCCCcceecCCCCCCCCCCCcchhhHHhhhCC
Confidence 999999999999999999999999999999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=1.3e-72 Score=489.77 Aligned_cols=187 Identities=40% Similarity=0.792 Sum_probs=173.8
Q ss_pred EEEEeCCCCcccceeecCCCCc---ccCCCCeeeCCCCeEEEeCCCCCc-eeEeeeccCCCC-CCCCcccccCCCCCccc
Q 047437 29 FTITNNCPYTIWPGTLAGSGTP---QLLTTGFQLESGQSVRIPSVPGWS-GRIWARTGCSFD-EFGVGSCQTGDCGGRLQ 103 (223)
Q Consensus 29 ~ti~N~C~~tVWp~~~~~~g~~---~l~~~g~~L~~G~s~s~~~p~~Ws-GriWaRtgCs~d-~~g~~~C~TGdCgg~l~ 103 (223)
|||+|||+||||||+++++|++ ++..+||+|+||++++|.+|++|+ |||||||||+|| ..|+++|+||||||+++
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 7999999999999999999988 677799999999999999999997 999999999999 46899999999999999
Q ss_pred cCCCCCCCCceeEEEEecCCCCCceeeeecccccCcceeeeecCCCCCCCCCCccCcccCCCCccccccCCCCCCCCcee
Q 047437 104 CDGSGATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRGVYGACNATGCASDINMGCPKELQVVGGEGTREGEVI 183 (223)
Q Consensus 104 C~g~g~~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~~C~~~~C~~dl~~~CP~~l~v~~~~~~~~g~vv 183 (223)
|++ ++.||+|||||+|+.. ++|||||||||||||||+|.|.. .|+.++|.+|||..||.||||+.+ .+|+||
T Consensus 81 C~~-~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~---~C~~~~C~~dln~~CP~~L~v~~~---~~g~~v 152 (229)
T cd09219 81 CEN-SDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI---TCPQPQCQVDLNVLCPALLRGPLD---QKGVNL 152 (229)
T ss_pred cCC-CCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC---CCCCCcccCCCcccCCHHHccccC---CCCccc
Confidence 995 5689999999999976 78999999999999999999932 699999999999999999999842 258899
Q ss_pred ecCchhhh-hCC--CCcccCCCCCCCCCCCC--ChhHHHHHhhCC
Q 047437 184 ACKSACEA-FGL--DQYCCSGEFANPTTCRP--SFYSSIFKRACP 223 (223)
Q Consensus 184 ~C~SaC~~-~~~--~~~CC~G~~~~p~~C~p--t~ys~~FK~~CP 223 (223)
||||||.+ |++ |||||+|+|++|++|+| ++||++||++||
T Consensus 153 aC~SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP 197 (229)
T cd09219 153 GCISPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCP 197 (229)
T ss_pred eecCHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCc
Confidence 99999999 655 99999999999999999 899999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.6e-68 Score=461.47 Aligned_cols=185 Identities=57% Similarity=1.195 Sum_probs=152.8
Q ss_pred eCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCCCceeEeeeccCCCCCCCCcccccCCCCCccccCCCCCCCC
Q 047437 33 NNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFGVGSCQTGDCGGRLQCDGSGATPP 112 (223)
Q Consensus 33 N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~g~~pp 112 (223)
|||+||||||+++++|++++..+||+|+||++++|.+|++|+|||||||||++|+.|+++|+||||+|+++|++.++++|
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P 80 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPP 80 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCccc
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999778999
Q ss_pred ceeEEEEecCCCCCceeeeecccccCcceeeeecCCCCCCCCCCccCcccCCCCccccccCCCCCCCCceeecCchhhhh
Q 047437 113 ASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRGVYGACNATGCASDINMGCPKELQVVGGEGTREGEVIACKSACEAF 192 (223)
Q Consensus 113 aTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~~C~~~~C~~dl~~~CP~~l~v~~~~~~~~g~vv~C~SaC~~~ 192 (223)
+|||||+|+..+++|||||||||||||||+|+|++ ...|+.++|.+||+..||.|||++.. +++|+|+|+|.+|
T Consensus 81 ~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~-----~~vv~C~SaC~~~ 154 (213)
T PF00314_consen 81 ATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNS-----DGVVGCKSACDAF 154 (213)
T ss_dssp --EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETT-----SSTTEE--HHHHH
T ss_pred ceeEEEEeccCCCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeecc-----Cceeeecccceec
Confidence 99999999877789999999999999999999995 57899999999999999999999764 3399999999999
Q ss_pred CCCCcccCCCCCCCCCCCCChhHHHHHhhCC
Q 047437 193 GLDQYCCSGEFANPTTCRPSFYSSIFKRACP 223 (223)
Q Consensus 193 ~~~~~CC~G~~~~p~~C~pt~ys~~FK~~CP 223 (223)
++|||||+|+|.+|++|+|++|+++||++||
T Consensus 155 ~~~~~CC~g~~~~~~~C~~~~ys~~fK~~CP 185 (213)
T PF00314_consen 155 NTDEYCCRGAYNTPDTCPPTNYSQFFKKACP 185 (213)
T ss_dssp -SHHHHTTCCS-TTSCS---HHHHHHHHH-T
T ss_pred cCCccccccccCCCcccccchhhhhhhhhCc
Confidence 9999999999999999999999999999998
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=8.1e-51 Score=336.30 Aligned_cols=147 Identities=46% Similarity=0.970 Sum_probs=133.0
Q ss_pred EEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCCCceeEeeeccCCCCC-CCCcccccCCCCCccccCCC
Q 047437 29 FTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDE-FGVGSCQTGDCGGRLQCDGS 107 (223)
Q Consensus 29 ~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~WsGriWaRtgCs~d~-~g~~~C~TGdCgg~l~C~g~ 107 (223)
|||+|||+||||||+++++|++ +..+||+|+||+++++.+|++|+|||||||+|+||+ .|+++|+||||+|+++|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g- 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQG- 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCC-
Confidence 7899999999999999999986 678999999999999999999999999999999998 7999999999999999998
Q ss_pred CCCCCceeEEEEecCCCCCceeeeecccccCcceeeeecCCCCCCCCCCccCcccCCCCccccccCCCCCCCCceeecCc
Q 047437 108 GATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRGVYGACNATGCASDINMGCPKELQVVGGEGTREGEVIACKS 187 (223)
Q Consensus 108 g~~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~~C~~~~C~~dl~~~CP~~l~v~~~~~~~~g~vv~C~S 187 (223)
++.||+|||||+|+..+++|||||||||||||||+|+|++ +.|+..+|.+ ||+++.+..++ ...+.-|.+
T Consensus 79 ~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~-----Cp~Aysya~Dd---~~s~~tC~~ 148 (157)
T cd09215 79 TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA-----CPDAYSYAYDD---QTSTFTCPG 148 (157)
T ss_pred CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC--CCCCCCcccc-----CccccccCCCC---CccceECCC
Confidence 4579999999999876788999999999999999999975 5699999998 99999887542 345667765
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=3.2e-47 Score=313.32 Aligned_cols=140 Identities=51% Similarity=0.993 Sum_probs=127.4
Q ss_pred EEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCC-CceeEeeeccCCCCCCCCcccccCCCCCccccCCC
Q 047437 29 FTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPG-WSGRIWARTGCSFDEFGVGSCQTGDCGGRLQCDGS 107 (223)
Q Consensus 29 ~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~-WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~ 107 (223)
|+|+|||+||||||+++. ++||+|+||+++++.+|++ |+|||||||+|+||+.|+++|+||||+|+++|++
T Consensus 1 ~~~~N~C~~tvWp~~~~~-------~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~- 72 (151)
T cd09217 1 FTITNNCGYTVWPAATPV-------GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTG- 72 (151)
T ss_pred CEEEeCCCCcccceEecC-------CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecCC-
Confidence 789999999999999862 4799999999999999997 9999999999999999999999999999999995
Q ss_pred CCCCCceeEEEEecCCCCCceeeeecccccCcceeeeecCCCCCCCCCCccCcccCCCCccccccCCCCCCCCceeecCc
Q 047437 108 GATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRGVYGACNATGCASDINMGCPKELQVVGGEGTREGEVIACKS 187 (223)
Q Consensus 108 g~~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~~C~~~~C~~dl~~~CP~~l~v~~~~~~~~g~vv~C~S 187 (223)
++.||+|++||+|+. +++||||||+||||||||+|+|++ ..|+.++|..| ||++++++.+ +.++.+|.+
T Consensus 73 ~g~pp~Tl~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~--~~C~~~~C~~d----C~~ay~~~~D----~~~~~~C~~ 141 (151)
T cd09217 73 SGKPPATLAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTG--GGCHAIPCAAN----CPDAYSYPKD----PTTTFTCPG 141 (151)
T ss_pred CCCCCceeEEEEecC-CCCccEEEEeecccccceEEecCC--CCCCCCcCCCC----CchHhcCCCC----CCceEeCCC
Confidence 568999999999986 578999999999999999999974 45999999987 9999998764 468889965
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=3.6e-46 Score=307.58 Aligned_cols=145 Identities=37% Similarity=0.615 Sum_probs=126.3
Q ss_pred EEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCCCceeEeeeccCCCCCCCCcccccCCCCCccccCCCC
Q 047437 29 FTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWARTGCSFDEFGVGSCQTGDCGGRLQCDGSG 108 (223)
Q Consensus 29 ~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~g 108 (223)
|||+|||+|||||+++++++++.+..+||+|+||++++|++|+.|+||||+||+|++|..+++.|+||||++ +.|.+.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~ 79 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPN 79 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCC
Confidence 689999999999999999888877778999999999999999999999999999999988999999999998 6887777
Q ss_pred CCCCceeEEEEecCCCCCceeeeecccccCcceeeeecCCCCCCCCCCccCcccCCCCccccccCCCCCCCCceeecCc
Q 047437 109 ATPPASLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRGVYGACNATGCASDINMGCPKELQVVGGEGTREGEVIACKS 187 (223)
Q Consensus 109 ~~ppaTlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~~~~~C~~~~C~~dl~~~CP~~l~v~~~~~~~~g~vv~C~S 187 (223)
+.||+|||||||+..+++|||||||||||||||+|+|+.+.+.|+.++ +++++..++ ..+...|..
T Consensus 80 g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g~C~~~~----------~~~~~~~~~---~~~~~~c~~ 145 (153)
T cd08961 80 RDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDGTCLSTG----------DAYSYAFDD---HESTFTCGG 145 (153)
T ss_pred CCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCCCccccc----------cccccCCCC---ccceEEcCC
Confidence 899999999999876688999999999999999999987666787655 566665321 245666643
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.92 E-value=0.00013 Score=60.64 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=36.9
Q ss_pred CCceeEEEEecCCCCCceeeeeccccc---CcceeeeecCCCCCCCCCCccC
Q 047437 111 PPASLFEITLGKGNDKDFYDVSIVDGY---NLPLVAEPRGVYGACNATGCAS 159 (223)
Q Consensus 111 ppaTlaEftl~~~~~~d~YDVSlVdG~---NlP~~i~p~~~~~~C~~~~C~~ 159 (223)
.|.|..||+|...+..-|||+|.|.|+ .-+|.|.|.+ ..|++..|..
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~--~~Cp~I~Wp~ 121 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSD--PSCPSIVWPN 121 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCC--CCCCceECCC
Confidence 489999999987667899999999996 3457788875 4677666654
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.06 E-value=0.11 Score=48.54 Aligned_cols=110 Identities=25% Similarity=0.295 Sum_probs=64.1
Q ss_pred EEEEEeCCCC--cccceeecCC---CCc------------ccC----C----CCeee-CCCCeEEEeCCCCCceeEeeec
Q 047437 28 TFTITNNCPY--TIWPGTLAGS---GTP------------QLL----T----TGFQL-ESGQSVRIPSVPGWSGRIWART 81 (223)
Q Consensus 28 t~ti~N~C~~--tVWp~~~~~~---g~~------------~l~----~----~g~~L-~~G~s~s~~~p~~WsGriWaRt 81 (223)
.|+|+||-+. +||..+++.. |+. ... . =...| ++|++.++.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4789999877 8888887542 210 000 0 01233 357888999998 999999543
Q ss_pred cCCCCCCCCcccccCCCCCccc-cCCCC-CCCCc----eeEEEEecCCCCCceeeeecccccCcceeeeecC
Q 047437 82 GCSFDEFGVGSCQTGDCGGRLQ-CDGSG-ATPPA----SLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRG 147 (223)
Q Consensus 82 gCs~d~~g~~~C~TGdCgg~l~-C~g~g-~~ppa----TlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~ 147 (223)
+=.. .|.-.. +..+. =.... ..|-. ..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 81 g~~L----~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSKL----RFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCee----EEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEecccceeeeccceEEEEec
Confidence 2100 111111 11111 00000 01111 447999984 45689999999999999998664
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=90.14 E-value=0.96 Score=42.69 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=47.8
Q ss_pred CCCeEEEeCCCCCceeEeeeccCCCCCCCCcccccCCCC-CccccCCCC-CCCC----ceeEEEEecCCCCCceeeeecc
Q 047437 61 SGQSVRIPSVPGWSGRIWARTGCSFDEFGVGSCQTGDCG-GRLQCDGSG-ATPP----ASLFEITLGKGNDKDFYDVSIV 134 (223)
Q Consensus 61 ~G~s~s~~~p~~WsGriWaRtgCs~d~~g~~~C~TGdCg-g~l~C~g~g-~~pp----aTlaEftl~~~~~~d~YDVSlV 134 (223)
+|++.++.+|.-++||||=-.+=.. .|. ...+ | +..+=.-.. ..|- -..+|||++. ..-|-++|.|
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~~L----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~V 133 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDDKL----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISYV 133 (369)
T ss_pred CCCceeEEcccccceEEEEEcCCeE----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccce
Confidence 4888999999989999995332100 111 1111 1 111100000 0111 1448999985 4578999999
Q ss_pred cccCcceeeeecC
Q 047437 135 DGYNLPLVAEPRG 147 (223)
Q Consensus 135 dG~NlP~~i~p~~ 147 (223)
|-|.+||.|+-.+
T Consensus 134 D~~~~P~~l~l~~ 146 (369)
T cd09220 134 DFVGLPLGLSLTT 146 (369)
T ss_pred eeeccCeEEEEEc
Confidence 9999999998654
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=71.50 E-value=3.6 Score=38.13 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=27.5
Q ss_pred eeEEEEecCCCCCceeeeecccccCcceeeeecC
Q 047437 114 SLFEITLGKGNDKDFYDVSIVDGYNLPLVAEPRG 147 (223)
Q Consensus 114 TlaEftl~~~~~~d~YDVSlVdG~NlP~~i~p~~ 147 (223)
..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 447999984 67899999999999999998765
No 12
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.29 E-value=17 Score=28.54 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=31.5
Q ss_pred ceEEEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEE
Q 047437 26 GSTFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRI 67 (223)
Q Consensus 26 ~~t~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~ 67 (223)
.+-|+|-|+-++.|+++|--..+..-...|-+.|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 356899999999999999644433223346689999998777
No 13
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=48.24 E-value=20 Score=25.18 Aligned_cols=23 Identities=35% Similarity=0.889 Sum_probs=17.9
Q ss_pred eeeCCCCeEEEeCCCCC-----ceeEee
Q 047437 57 FQLESGQSVRIPSVPGW-----SGRIWA 79 (223)
Q Consensus 57 ~~L~~G~s~s~~~p~~W-----sGriWa 79 (223)
|+|.||+..++....+. +|++|=
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 67888998888877654 488884
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.84 E-value=14 Score=28.34 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHhcccccceEE
Q 047437 6 SWPFLAAFLLFGSLFFLPSHGSTF 29 (223)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~a~~~t~ 29 (223)
.+.+|.++|.+|+|+++.++++..
T Consensus 5 ~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHh
Confidence 344444444444555544555554
No 15
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=44.63 E-value=26 Score=29.32 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=29.8
Q ss_pred cceEEEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCCCceeEe
Q 047437 25 HGSTFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIW 78 (223)
Q Consensus 25 ~~~t~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~WsGriW 78 (223)
....++|+|+++.+|-+-+..-.|.+..- ..|+||+...++. +.+..|
T Consensus 13 ~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~T---Y~tHpW 60 (156)
T PF01847_consen 13 EPSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQNT---YVTHPW 60 (156)
T ss_dssp SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEEE---ETT-EE
T ss_pred CceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEccc---ccCCcE
Confidence 35789999999999988777767765432 4699999988873 445566
No 16
>PHA03094 dUTPase; Provisional
Probab=42.80 E-value=26 Score=28.48 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.2
Q ss_pred CCeeeCCCCeEE------EeCCCCCceeEeeeccC
Q 047437 55 TGFQLESGQSVR------IPSVPGWSGRIWARTGC 83 (223)
Q Consensus 55 ~g~~L~~G~s~s------~~~p~~WsGriWaRtgC 83 (223)
..+.|.|++... +.+|.+|.|.|++|.+-
T Consensus 34 ~~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 34 YDYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred CCeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 457899999877 67899999999999754
No 17
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=42.04 E-value=49 Score=26.82 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=36.5
Q ss_pred ceEEEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEeCCCCCceeEeee
Q 047437 26 GSTFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIPSVPGWSGRIWAR 80 (223)
Q Consensus 26 ~~t~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~~p~~WsGriWaR 80 (223)
...++|+|+.+.+|-+-+.-..|.+.. =..|+||+...+. .+.|..|=-
T Consensus 8 ~~~v~F~N~t~~~v~~~Wid~~G~~~~---Y~~l~pg~~~~~~---Ty~~H~W~~ 56 (141)
T cd05468 8 PSTVRFVNRTDRPVELYWIDYDGKPVS---YGTLQPGETVRQN---TYVGHPWLF 56 (141)
T ss_pred eEEEEEEeCCCCeEEEEEECCCCCEEE---eeeeCCCCEEeec---ccCCCcEEE
Confidence 478999999999999888876676543 2379999987665 355666643
No 18
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=35.90 E-value=14 Score=30.00 Aligned_cols=38 Identities=37% Similarity=0.741 Sum_probs=21.9
Q ss_pred CCcccccCCCCCccccCCCCCCCCceeEEEEecCCCCCceeeee
Q 047437 89 GVGSCQTGDCGGRLQCDGSGATPPASLFEITLGKGNDKDFYDVS 132 (223)
Q Consensus 89 g~~~C~TGdCgg~l~C~g~g~~ppaTlaEftl~~~~~~d~YDVS 132 (223)
|.+.|+-|||||.|.|.- | -+.=.|.++.+-..|-||.
T Consensus 83 g~Gp~~PGdCGg~L~C~H-G-----ViGi~Tagg~g~VaF~dir 120 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKH-G-----VIGIVTAGGEGHVAFADIR 120 (127)
T ss_dssp EE-SSSTT-TCSEEEETT-C-----EEEEEEEEETTEEEEEECC
T ss_pred ecccCCCCCCCceeEeCC-C-----eEEEEEeCCCceEEEEech
Confidence 457899999999999973 1 1223344443334555554
No 19
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=32.68 E-value=14 Score=30.57 Aligned_cols=10 Identities=50% Similarity=0.946 Sum_probs=8.0
Q ss_pred cccccCccee
Q 047437 133 IVDGYNLPLV 142 (223)
Q Consensus 133 lVdG~NlP~~ 142 (223)
+||||||=..
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998655
No 20
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=28.89 E-value=58 Score=20.80 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=7.0
Q ss_pred ccceEEEEEeCC
Q 047437 24 SHGSTFTITNNC 35 (223)
Q Consensus 24 a~~~t~ti~N~C 35 (223)
+.+-++.|.=+|
T Consensus 21 ~~pG~ViING~C 32 (36)
T PF08194_consen 21 ATPGNVIINGKC 32 (36)
T ss_pred CCCCeEEECcee
Confidence 446666665555
No 21
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=28.57 E-value=73 Score=23.01 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=20.8
Q ss_pred CeeeCCCCeEE------EeCCCCCceeEeeeccC
Q 047437 56 GFQLESGQSVR------IPSVPGWSGRIWARTGC 83 (223)
Q Consensus 56 g~~L~~G~s~s------~~~p~~WsGriWaRtgC 83 (223)
.+.|.|+++.. +.+|.++.|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchh
Confidence 47788877544 44788999999999643
No 22
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=27.85 E-value=2e+02 Score=25.00 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCcccceee--cCCCC--ccc--CCCCeeeCCCCeEEEeC
Q 047437 26 GSTFTITNNCPYTIWPGTL--AGSGT--PQL--LTTGFQLESGQSVRIPS 69 (223)
Q Consensus 26 ~~t~ti~N~C~~tVWp~~~--~~~g~--~~l--~~~g~~L~~G~s~s~~~ 69 (223)
..+|+|.|+=.+++-.-.. ..... .++ .+-=|+|+||++..+.+
T Consensus 41 ~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRi 90 (230)
T PRK09918 41 EGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRF 90 (230)
T ss_pred eEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEE
Confidence 4699999998776332221 11111 111 12257899999887754
No 23
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=27.66 E-value=80 Score=22.88 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=23.6
Q ss_pred EEEEEeCCCCcccceeecCCCCcccCCCCeeeCCCCeEEEe
Q 047437 28 TFTITNNCPYTIWPGTLAGSGTPQLLTTGFQLESGQSVRIP 68 (223)
Q Consensus 28 t~ti~N~C~~tVWp~~~~~~g~~~l~~~g~~L~~G~s~s~~ 68 (223)
=-.+.|+|+.+|-+-+.=.+|+... -..+.||+-.+|.
T Consensus 16 YT~v~N~Ca~tvsVtV~Y~dG~~~P---Crv~~PG~~~Tf~ 53 (68)
T PF01356_consen 16 YTDVTNGCADTVSVTVEYTDGQEVP---CRVIPPGDIATFP 53 (68)
T ss_dssp EEEEEE-SSS-EEEEEEETTS-CEE---EEEE-TTEEEEEE
T ss_pred EEEeeCCCcccEEEEEEEeCCCcce---eEEeCCCCEEEec
Confidence 3458999999998877655554321 3678888887765
No 24
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=25.34 E-value=1.5e+02 Score=21.63 Aligned_cols=48 Identities=17% Similarity=0.040 Sum_probs=29.8
Q ss_pred ccccceEEEEEeCCCCcccceeecCC-CCccc--CCCCeeeCCCCeEEEeC
Q 047437 22 LPSHGSTFTITNNCPYTIWPGTLAGS-GTPQL--LTTGFQLESGQSVRIPS 69 (223)
Q Consensus 22 ~~a~~~t~ti~N~C~~tVWp~~~~~~-g~~~l--~~~g~~L~~G~s~s~~~ 69 (223)
.....++|+|+|....+.---+.... ....+ ......|.||++.++.+
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V 69 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEV 69 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEE
Confidence 34567899999999887554443221 11111 11234699999988886
No 25
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=25.32 E-value=1.4e+02 Score=23.26 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=36.5
Q ss_pred ccccceEEEEEeCCCCcccceeec-----CC----------CCc-cc-CCCCeeeCCCCeEEEeCCC-CCceeEee
Q 047437 22 LPSHGSTFTITNNCPYTIWPGTLA-----GS----------GTP-QL-LTTGFQLESGQSVRIPSVP-GWSGRIWA 79 (223)
Q Consensus 22 ~~a~~~t~ti~N~C~~tVWp~~~~-----~~----------g~~-~l-~~~g~~L~~G~s~s~~~p~-~WsGriWa 79 (223)
......+++|+|.-.-+|+++..- |. |.- .+ +++..+.+||+++++++-+ .=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 345578999999999999998631 11 100 11 2445677899999888532 22335555
No 26
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=24.76 E-value=70 Score=24.12 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=19.7
Q ss_pred eeeCCCCeEEEeCCCCCceeEeeecc
Q 047437 57 FQLESGQSVRIPSVPGWSGRIWARTG 82 (223)
Q Consensus 57 ~~L~~G~s~s~~~p~~WsGriWaRtg 82 (223)
.+|+||+++++.+|.+|..-++...|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57899999999999999988887764
No 27
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.51 E-value=1.5e+02 Score=23.18 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=36.7
Q ss_pred ccccceEEEEEeCCCCcccceeec-----CC----------CC-ccc-CCCCeeeCCCCeEEEeCCC-CCceeEee
Q 047437 22 LPSHGSTFTITNNCPYTIWPGTLA-----GS----------GT-PQL-LTTGFQLESGQSVRIPSVP-GWSGRIWA 79 (223)
Q Consensus 22 ~~a~~~t~ti~N~C~~tVWp~~~~-----~~----------g~-~~l-~~~g~~L~~G~s~s~~~p~-~WsGriWa 79 (223)
+.....++.|+|.-.-+|+++..- |. |. -.+ +++..+.+||+++++.+-+ +=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 345678999999999999998631 11 10 011 2345677899999888532 22335655
No 28
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=23.96 E-value=81 Score=23.16 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=14.0
Q ss_pred CCccchhHHHHHHHHHHHHh
Q 047437 1 MLTITSWPFLAAFLLFGSLF 20 (223)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~ 20 (223)
|..+++|-++.+++++++++
T Consensus 1 mg~~g~~elliIl~IvlllF 20 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVF 20 (73)
T ss_pred CCCccHHHHHHHHHHHHHHh
Confidence 66788887777666665554
No 29
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=23.26 E-value=85 Score=23.37 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=13.8
Q ss_pred CCccchhHHHHHHHHHHHHh
Q 047437 1 MLTITSWPFLAAFLLFGSLF 20 (223)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~ 20 (223)
|..+.+|-++.+++++++++
T Consensus 1 Mgg~g~~ellIIlvIvlllF 20 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLF 20 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 66778887777666665554
No 30
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=23.17 E-value=2.8e+02 Score=24.28 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=25.0
Q ss_pred cceEEEEEeCCCCcccceee--cCC--CC-ccc--CCCCeeeCCCCeEEEeC
Q 047437 25 HGSTFTITNNCPYTIWPGTL--AGS--GT-PQL--LTTGFQLESGQSVRIPS 69 (223)
Q Consensus 25 ~~~t~ti~N~C~~tVWp~~~--~~~--g~-~~l--~~~g~~L~~G~s~s~~~ 69 (223)
...+|+|.|+=..++-.-.. ... +. .++ .+-=|+|+||+..++.+
T Consensus 38 ~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI 89 (229)
T PRK15211 38 KNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRI 89 (229)
T ss_pred ceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 35799999988765322111 111 11 111 12258899998777763
No 31
>PRK02710 plastocyanin; Provisional
Probab=22.81 E-value=2.8e+02 Score=21.36 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=10.6
Q ss_pred CCeeeCCCCeEEEeC
Q 047437 55 TGFQLESGQSVRIPS 69 (223)
Q Consensus 55 ~g~~L~~G~s~s~~~ 69 (223)
.-.++++|++.++..
T Consensus 47 ~~i~v~~Gd~V~~~N 61 (119)
T PRK02710 47 STLTIKAGDTVKWVN 61 (119)
T ss_pred CEEEEcCCCEEEEEE
Confidence 467788888777653
No 32
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=22.18 E-value=93 Score=23.05 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=13.2
Q ss_pred CCccchhHHHHHHHHHHHHh
Q 047437 1 MLTITSWPFLAAFLLFGSLF 20 (223)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~ 20 (223)
|..+++|-++.+++++++++
T Consensus 1 Mgg~s~~ellIIlvIvlLlF 20 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVF 20 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 67777887776666555544
No 33
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.71 E-value=3.4e+02 Score=23.74 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=26.8
Q ss_pred cceEEEEEeCCCCcccceeecCCC-Cc-----cc--CCCCeeeCCCCeEEEeC
Q 047437 25 HGSTFTITNNCPYTIWPGTLAGSG-TP-----QL--LTTGFQLESGQSVRIPS 69 (223)
Q Consensus 25 ~~~t~ti~N~C~~tVWp~~~~~~g-~~-----~l--~~~g~~L~~G~s~s~~~ 69 (223)
.+..|+|.|.=.+++-+-..-..| .+ ++ .+-=|+|+||+..++.+
T Consensus 43 k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi 95 (235)
T COG3121 43 KETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRI 95 (235)
T ss_pred ceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEE
Confidence 347899999887776555432222 11 11 01247899988766653
No 34
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=20.88 E-value=3.1e+02 Score=20.30 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=15.9
Q ss_pred CeeeCCCCeEEEeCCCCCceeEe
Q 047437 56 GFQLESGQSVRIPSVPGWSGRIW 78 (223)
Q Consensus 56 g~~L~~G~s~s~~~p~~WsGriW 78 (223)
...|.||+++++.+.. .|+++
T Consensus 61 ~~~~~pG~t~~~tF~~--~G~y~ 81 (99)
T TIGR02656 61 DLLNSPGESYEVTFST--PGTYT 81 (99)
T ss_pred ccccCCCCEEEEEeCC--CEEEE
Confidence 4567899999998775 57663
No 35
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.28 E-value=1.4e+02 Score=21.02 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=10.3
Q ss_pred ccceEEEEEeCCCCccc
Q 047437 24 SHGSTFTITNNCPYTIW 40 (223)
Q Consensus 24 a~~~t~ti~N~C~~tVW 40 (223)
....+++|.|....++-
T Consensus 6 ~~~~~~tv~N~g~~~~~ 22 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLT 22 (78)
T ss_dssp EEEEEEEEE--SSS-BS
T ss_pred EEEEEEEEEECCCCcee
Confidence 34578999999987654
Done!