Query 047440
Match_columns 619
No_of_seqs 676 out of 3336
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 100.0 4.8E-36 1E-40 279.0 19.8 176 2-184 1-177 (310)
2 PF03105 SPX: SPX domain; Int 100.0 2E-32 4.3E-37 271.4 16.9 147 2-148 1-275 (275)
3 KOG1162 Predicted small molecu 100.0 4E-31 8.7E-36 270.9 18.0 180 2-188 1-211 (617)
4 COG2814 AraJ Arabinose efflux 100.0 3.6E-29 7.8E-34 249.0 28.1 285 244-596 9-297 (394)
5 PRK14995 methyl viologen resis 100.0 1.6E-27 3.6E-32 255.8 27.5 325 246-593 4-343 (495)
6 PRK03545 putative arabinose tr 100.0 5.7E-27 1.2E-31 244.6 29.3 277 245-590 6-285 (390)
7 COG2271 UhpC Sugar phosphate p 100.0 2.7E-27 5.8E-32 231.8 23.1 308 243-596 24-342 (448)
8 TIGR02332 HpaX 4-hydroxyphenyl 100.0 3.9E-27 8.5E-32 246.9 25.9 313 244-589 4-324 (412)
9 PRK10213 nepI ribonucleoside t 100.0 5.5E-26 1.2E-30 236.8 30.5 268 244-579 16-286 (394)
10 PRK09556 uhpT sugar phosphate 99.9 4.4E-26 9.6E-31 243.3 24.9 302 246-587 27-336 (467)
11 TIGR00711 efflux_EmrB drug res 99.9 1.1E-25 2.3E-30 242.4 28.0 323 249-593 3-339 (485)
12 COG5036 SPX domain-containing 99.9 5.2E-27 1.1E-31 222.3 15.4 169 2-184 1-169 (509)
13 TIGR01299 synapt_SV2 synaptic 99.9 4.7E-26 1E-30 248.9 24.8 187 244-439 163-362 (742)
14 PRK11663 regulatory protein Uh 99.9 2.2E-25 4.9E-30 235.5 29.1 281 245-572 20-306 (434)
15 TIGR00710 efflux_Bcr_CflA drug 99.9 2E-25 4.3E-30 232.7 28.1 281 250-593 7-290 (385)
16 PRK10091 MFS transport protein 99.9 2.2E-25 4.8E-30 231.8 27.1 276 250-593 5-283 (382)
17 PRK11551 putative 3-hydroxyphe 99.9 4.2E-25 9.1E-30 232.0 29.2 292 244-596 11-306 (406)
18 TIGR00886 2A0108 nitrite extru 99.9 5.4E-25 1.2E-29 227.8 27.5 294 251-593 4-309 (366)
19 PRK10642 proline/glycine betai 99.9 6.3E-25 1.4E-29 235.6 28.8 291 247-586 15-327 (490)
20 PRK10406 alpha-ketoglutarate t 99.9 9.8E-25 2.1E-29 230.6 29.6 279 245-586 19-320 (432)
21 PRK15402 multidrug efflux syst 99.9 7.3E-25 1.6E-29 230.1 28.1 286 246-593 11-299 (406)
22 PF07690 MFS_1: Major Facilita 99.9 1.5E-25 3.2E-30 230.6 22.2 287 254-596 2-294 (352)
23 PRK10473 multidrug efflux syst 99.9 1.1E-24 2.4E-29 227.7 28.9 283 250-596 5-290 (392)
24 COG2223 NarK Nitrate/nitrite t 99.9 7.5E-25 1.6E-29 215.3 25.7 292 244-595 10-304 (417)
25 TIGR00903 2A0129 major facilit 99.9 4.8E-25 1E-29 226.4 25.5 248 260-574 3-252 (368)
26 PRK15403 multidrug efflux syst 99.9 1.5E-24 3.2E-29 227.4 28.7 261 254-576 22-286 (413)
27 PRK03699 putative transporter; 99.9 1.9E-24 4E-29 225.8 27.9 284 246-595 5-291 (394)
28 TIGR00891 2A0112 putative sial 99.9 1.4E-24 3E-29 227.9 27.0 303 244-587 8-316 (405)
29 PLN00028 nitrate transmembrane 99.9 2E-24 4.4E-29 230.4 28.6 277 246-575 34-318 (476)
30 TIGR00900 2A0121 H+ Antiporter 99.9 7.1E-25 1.5E-29 226.6 23.4 288 253-596 4-298 (365)
31 PRK12307 putative sialic acid 99.9 3.8E-24 8.2E-29 226.3 29.2 295 244-593 14-314 (426)
32 TIGR00893 2A0114 d-galactonate 99.9 1.1E-24 2.3E-29 227.7 23.6 275 259-576 5-282 (399)
33 PRK09705 cynX putative cyanate 99.9 2.6E-24 5.7E-29 224.3 26.1 261 264-593 25-288 (393)
34 PRK10504 putative transporter; 99.9 4.4E-24 9.5E-29 228.8 28.5 327 249-594 11-346 (471)
35 TIGR00894 2A0114euk Na(+)-depe 99.9 1.2E-24 2.6E-29 232.5 23.8 288 244-575 15-327 (465)
36 TIGR00890 2A0111 Oxalate/Forma 99.9 2.3E-24 5E-29 223.7 24.7 271 263-596 18-291 (377)
37 PRK11102 bicyclomycin/multidru 99.9 5.1E-24 1.1E-28 221.5 25.7 265 262-587 5-272 (377)
38 KOG1330 Sugar transporter/spin 99.9 2.1E-25 4.6E-30 220.5 13.7 275 244-572 29-310 (493)
39 PRK10133 L-fucose transporter; 99.9 1.5E-23 3.3E-28 220.9 28.6 297 246-596 24-346 (438)
40 PRK11652 emrD multidrug resist 99.9 1.4E-23 3.1E-28 219.4 28.1 265 246-575 6-273 (394)
41 TIGR00895 2A0115 benzoate tran 99.9 1.9E-23 4E-28 218.7 28.2 307 244-583 13-323 (398)
42 TIGR00881 2A0104 phosphoglycer 99.9 4.1E-24 9E-29 222.0 23.0 273 257-573 4-280 (379)
43 PRK09952 shikimate transporter 99.9 4.1E-23 8.9E-28 218.4 29.1 288 244-589 18-330 (438)
44 PRK11043 putative transporter; 99.9 4.9E-23 1.1E-27 215.9 28.6 268 253-588 11-281 (401)
45 PRK15075 citrate-proton sympor 99.9 6.9E-23 1.5E-27 216.7 29.2 280 245-585 12-314 (434)
46 PRK15034 nitrate/nitrite trans 99.9 6.6E-23 1.4E-27 211.9 27.4 284 244-590 30-331 (462)
47 TIGR00887 2A0109 phosphate:H+ 99.9 2.6E-23 5.6E-28 224.0 24.6 321 244-593 12-383 (502)
48 PRK11273 glpT sn-glycerol-3-ph 99.9 8.4E-23 1.8E-27 217.1 28.2 285 247-576 28-322 (452)
49 TIGR00899 2A0120 sugar efflux 99.9 6.3E-23 1.4E-27 213.1 26.3 272 255-592 4-282 (375)
50 PRK11195 lysophospholipid tran 99.9 2.5E-23 5.4E-28 216.8 23.1 271 251-583 6-279 (393)
51 PRK05122 major facilitator sup 99.9 6.8E-23 1.5E-27 214.7 26.5 279 246-596 13-300 (399)
52 TIGR00897 2A0118 polyol permea 99.9 9.5E-23 2.1E-27 213.4 27.3 275 247-579 12-291 (402)
53 PRK03633 putative MFS family t 99.9 1.8E-22 3.8E-27 210.0 28.9 273 249-592 7-282 (381)
54 KOG2532 Permease of the major 99.9 2.5E-23 5.5E-28 216.5 22.2 278 276-597 66-355 (466)
55 PRK09874 drug efflux system pr 99.9 2.3E-22 4.9E-27 211.5 29.6 282 250-596 16-309 (408)
56 TIGR00805 oat sodium-independe 99.9 2.2E-23 4.8E-28 227.7 20.9 306 254-589 39-413 (633)
57 TIGR00892 2A0113 monocarboxyla 99.9 2.4E-22 5.2E-27 213.3 27.9 283 243-571 14-302 (455)
58 TIGR00885 fucP L-fucose:H+ sym 99.9 3.1E-22 6.7E-27 209.1 28.3 289 250-596 5-320 (410)
59 PRK03893 putative sialic acid 99.9 2.7E-22 5.9E-27 216.5 28.4 302 244-592 16-358 (496)
60 PRK10077 xylE D-xylose transpo 99.9 5.9E-23 1.3E-27 220.6 23.0 310 244-593 8-354 (479)
61 TIGR00879 SP MFS transporter, 99.9 5.7E-23 1.2E-27 220.5 22.3 318 251-593 31-367 (481)
62 PRK11646 multidrug resistance 99.9 3.5E-22 7.7E-27 208.6 27.2 279 251-596 13-295 (400)
63 TIGR00712 glpT glycerol-3-phos 99.9 3.5E-22 7.7E-27 211.5 26.5 287 247-575 26-317 (438)
64 PRK10054 putative transporter; 99.9 3.4E-22 7.3E-27 208.4 24.7 279 250-594 9-293 (395)
65 TIGR00896 CynX cyanate transpo 99.9 3.3E-22 7.2E-27 206.0 24.1 266 262-595 14-283 (355)
66 TIGR00902 2A0127 phenyl propri 99.9 8.7E-22 1.9E-26 204.7 26.8 278 253-596 9-291 (382)
67 PRK12382 putative transporter; 99.9 8E-22 1.7E-26 206.1 26.2 276 249-596 16-300 (392)
68 PRK10489 enterobactin exporter 99.9 5.2E-22 1.1E-26 209.2 22.7 284 253-596 22-310 (417)
69 PRK11128 putative 3-phenylprop 99.9 1.9E-21 4E-26 202.3 26.5 288 257-614 13-306 (382)
70 KOG2533 Permease of the major 99.9 1.1E-22 2.4E-27 212.0 16.8 283 266-588 64-357 (495)
71 cd06174 MFS The Major Facilita 99.9 2.3E-21 5E-26 199.0 26.0 256 253-596 4-263 (352)
72 TIGR00901 2A0125 AmpG-related 99.9 1.7E-21 3.7E-26 200.8 22.6 271 264-592 4-292 (356)
73 PRK08633 2-acyl-glycerophospho 99.9 4.1E-21 8.8E-26 228.3 27.3 293 254-596 15-320 (1146)
74 PRK15011 sugar efflux transpor 99.9 1.1E-20 2.4E-25 197.2 27.2 272 251-590 18-297 (393)
75 COG5408 SPX domain-containing 99.9 5.4E-22 1.2E-26 185.1 14.3 53 97-149 241-293 (296)
76 TIGR00898 2A0119 cation transp 99.9 1.5E-21 3.2E-26 211.2 20.0 291 269-596 110-406 (505)
77 PRK11010 ampG muropeptide tran 99.9 1.1E-20 2.5E-25 201.9 26.5 282 248-589 12-303 (491)
78 TIGR00883 2A0106 metabolite-pr 99.9 2.1E-20 4.6E-25 195.2 26.7 268 260-585 5-295 (394)
79 KOG2615 Permease of the major 99.9 1.3E-21 2.9E-26 188.2 15.6 274 279-594 64-348 (451)
80 KOG3764 Vesicular amine transp 99.9 1.6E-22 3.6E-27 195.6 9.3 243 281-589 104-352 (464)
81 KOG0569 Permease of the major 99.9 3.3E-21 7.1E-26 198.2 19.4 287 284-593 61-353 (485)
82 TIGR00882 2A0105 oligosacchari 99.9 3.4E-20 7.3E-25 194.0 26.3 290 250-596 4-305 (396)
83 PF05977 MFS_3: Transmembrane 99.9 4.3E-20 9.2E-25 195.9 25.2 289 248-596 10-305 (524)
84 PRK06814 acylglycerophosphoeth 99.9 1.7E-20 3.6E-25 222.2 23.7 247 283-588 52-304 (1140)
85 PRK11902 ampG muropeptide tran 99.9 6.9E-20 1.5E-24 191.9 25.6 276 254-589 5-290 (402)
86 PRK09528 lacY galactoside perm 99.9 6.2E-20 1.3E-24 193.5 23.5 289 250-596 12-313 (420)
87 KOG0254 Predicted transporter 99.9 2.5E-20 5.4E-25 200.9 20.1 314 253-593 50-377 (513)
88 TIGR00806 rfc RFC reduced fola 99.8 7E-19 1.5E-23 178.2 26.8 163 264-436 42-207 (511)
89 KOG2325 Predicted transporter/ 99.8 5.4E-19 1.2E-23 180.3 23.5 305 240-589 26-347 (488)
90 COG0738 FucP Fucose permease [ 99.8 5.8E-18 1.3E-22 165.7 28.6 290 249-596 14-323 (422)
91 TIGR00792 gph sugar (Glycoside 99.8 7.2E-19 1.6E-23 186.6 23.1 277 263-595 14-307 (437)
92 TIGR00889 2A0110 nucleoside tr 99.8 2.1E-18 4.6E-23 180.9 23.6 272 254-594 8-300 (418)
93 TIGR00924 yjdL_sub1_fam amino 99.8 7.1E-18 1.5E-22 179.5 26.3 165 248-423 10-184 (475)
94 PRK10207 dipeptide/tripeptide 99.8 1E-17 2.2E-22 178.3 26.0 176 245-432 11-194 (489)
95 KOG0253 Synaptic vesicle trans 99.8 8E-18 1.7E-22 161.0 22.0 336 243-596 73-432 (528)
96 KOG2504 Monocarboxylate transp 99.8 1.2E-17 2.6E-22 176.4 25.7 350 242-613 40-400 (509)
97 TIGR02718 sider_RhtX_FptX side 99.8 3E-17 6.5E-22 171.3 27.3 275 250-587 3-286 (390)
98 KOG0255 Synaptic vesicle trans 99.8 1.2E-18 2.6E-23 188.9 16.3 288 276-596 111-401 (521)
99 COG2807 CynX Cyanate permease 99.8 2.7E-17 5.8E-22 158.6 23.2 265 263-596 27-295 (395)
100 PF00083 Sugar_tr: Sugar (and 99.8 7.6E-22 1.6E-26 210.3 -10.9 308 256-593 8-334 (451)
101 PF06609 TRI12: Fungal trichot 99.8 6E-17 1.3E-21 171.2 25.3 312 263-593 59-398 (599)
102 TIGR01301 GPH_sucrose GPH fami 99.8 1.6E-16 3.4E-21 165.8 26.5 301 250-594 6-355 (477)
103 KOG0252 Inorganic phosphate tr 99.8 5.1E-18 1.1E-22 167.6 12.4 325 244-596 37-399 (538)
104 PRK09584 tppB putative tripept 99.7 1.2E-15 2.6E-20 163.4 26.6 164 249-422 22-192 (500)
105 PTZ00207 hypothetical protein; 99.7 8.7E-16 1.9E-20 163.6 23.2 180 244-436 24-210 (591)
106 PRK10429 melibiose:sodium symp 99.7 1.3E-15 2.8E-20 162.8 23.8 286 255-592 13-313 (473)
107 PF13347 MFS_2: MFS/sugar tran 99.7 4.3E-16 9.3E-21 164.6 19.7 287 272-616 26-330 (428)
108 PRK09669 putative symporter Ya 99.7 2.8E-15 6.1E-20 159.1 24.8 266 266-590 27-309 (444)
109 COG2211 MelB Na+/melibiose sym 99.7 6.4E-15 1.4E-19 150.4 25.4 318 247-617 11-343 (467)
110 PRK09848 glucuronide transport 99.7 5E-15 1.1E-19 157.5 24.1 281 255-595 15-314 (448)
111 PF01306 LacY_symp: LacY proto 99.7 1.4E-14 2.9E-19 146.7 23.2 288 251-596 10-310 (412)
112 KOG4686 Predicted sugar transp 99.6 7.9E-16 1.7E-20 142.2 9.5 271 266-584 62-339 (459)
113 PRK11462 putative transporter; 99.6 5.5E-14 1.2E-18 149.3 24.9 267 261-587 22-305 (460)
114 PRK15462 dipeptide/tripeptide 99.6 7.3E-14 1.6E-18 146.6 24.9 165 246-420 7-178 (493)
115 PF03825 Nuc_H_symport: Nucleo 99.6 1.2E-13 2.5E-18 142.7 26.0 279 255-595 9-293 (400)
116 TIGR00788 fbt folate/biopterin 99.6 7.9E-14 1.7E-18 148.1 21.6 294 250-592 28-335 (468)
117 KOG2816 Predicted transporter 99.6 3E-13 6.5E-18 140.6 24.2 255 292-599 71-332 (463)
118 PF03209 PUCC: PUCC protein; 99.6 6.4E-13 1.4E-17 132.0 24.9 290 274-617 6-317 (403)
119 KOG3626 Organic anion transpor 99.5 1.7E-13 3.8E-18 145.8 18.7 309 251-588 100-474 (735)
120 PF11700 ATG22: Vacuole efflux 99.5 3.1E-12 6.8E-17 134.6 26.1 257 283-585 70-359 (477)
121 TIGR01272 gluP glucose/galacto 99.5 1E-12 2.2E-17 131.8 19.0 203 336-595 8-228 (310)
122 PF05631 DUF791: Protein of un 99.5 1.3E-11 2.7E-16 121.0 25.5 270 258-590 44-324 (354)
123 KOG2563 Permease of the major 99.5 3.7E-12 7.9E-17 126.8 21.5 321 244-616 41-375 (480)
124 PF03137 OATP: Organic Anion T 99.5 3.4E-15 7.4E-20 159.2 0.0 313 254-589 9-388 (539)
125 TIGR00880 2_A_01_02 Multidrug 99.5 3.4E-13 7.3E-18 118.3 10.3 137 287-434 2-141 (141)
126 TIGR00889 2A0110 nucleoside tr 99.5 7E-13 1.5E-17 139.2 14.5 167 265-436 225-407 (418)
127 TIGR01299 synapt_SV2 synaptic 99.4 1.5E-12 3.3E-17 143.3 16.2 138 286-436 598-738 (742)
128 COG2270 Permeases of the major 99.4 5.5E-12 1.2E-16 125.0 17.9 285 266-596 33-339 (438)
129 PRK10642 proline/glycine betai 99.4 6.4E-12 1.4E-16 135.1 17.3 173 258-438 260-436 (490)
130 COG3104 PTR2 Dipeptide/tripept 99.3 1.1E-10 2.3E-15 118.6 21.0 172 246-426 19-201 (498)
131 PRK05122 major facilitator sup 99.3 3.4E-11 7.3E-16 126.2 17.6 159 263-434 231-392 (399)
132 PRK11551 putative 3-hydroxyphe 99.3 1.8E-11 4E-16 128.5 15.4 156 265-430 237-395 (406)
133 TIGR00902 2A0127 phenyl propri 99.3 4.6E-11 1E-15 124.3 16.7 163 250-425 207-373 (382)
134 cd06174 MFS The Major Facilita 99.3 4.2E-11 9.1E-16 122.7 16.3 166 251-427 178-348 (352)
135 TIGR00890 2A0111 Oxalate/Forma 99.3 2.1E-11 4.5E-16 126.4 14.1 149 266-423 223-374 (377)
136 PRK15011 sugar efflux transpor 99.3 4.7E-11 1E-15 124.7 16.6 157 264-433 232-392 (393)
137 PRK09528 lacY galactoside perm 99.3 2.1E-11 4.6E-16 128.6 14.0 148 279-437 258-409 (420)
138 PRK09874 drug efflux system pr 99.3 4.1E-11 8.8E-16 126.0 15.3 161 263-434 234-401 (408)
139 PRK12382 putative transporter; 99.3 7.3E-11 1.6E-15 123.3 17.0 158 262-432 230-390 (392)
140 PRK10489 enterobactin exporter 99.3 7.6E-11 1.6E-15 124.3 17.3 159 267-436 242-404 (417)
141 PRK09705 cynX putative cyanate 99.3 1.7E-10 3.7E-15 120.4 18.6 173 256-439 213-389 (393)
142 TIGR00892 2A0113 monocarboxyla 99.3 2.8E-11 6.1E-16 128.7 12.8 163 252-424 245-414 (455)
143 TIGR00879 SP MFS transporter, 99.3 9.7E-11 2.1E-15 125.6 16.0 179 250-436 286-475 (481)
144 PRK03545 putative arabinose tr 99.2 2.6E-10 5.7E-15 119.0 18.3 154 269-434 226-383 (390)
145 PRK03633 putative MFS family t 99.2 3.4E-10 7.4E-15 117.7 17.2 148 265-426 217-367 (381)
146 TIGR00897 2A0118 polyol permea 99.2 2.9E-10 6.2E-15 119.2 16.7 166 255-429 229-399 (402)
147 PRK09556 uhpT sugar phosphate 99.2 3E-10 6.5E-15 121.5 17.0 173 250-428 260-446 (467)
148 PRK03893 putative sialic acid 99.2 3.9E-10 8.5E-15 121.8 18.0 132 267-399 294-429 (496)
149 TIGR00893 2A0114 d-galactonate 99.2 2.8E-10 6E-15 118.7 15.6 173 249-428 216-396 (399)
150 TIGR00899 2A0120 sugar efflux 99.2 4.7E-10 1E-14 116.4 16.6 149 267-427 218-370 (375)
151 PRK03699 putative transporter; 99.2 3.3E-10 7.3E-15 118.4 15.4 165 251-427 208-376 (394)
152 TIGR00883 2A0106 metabolite-pr 99.2 2.3E-10 4.9E-15 119.4 13.0 154 251-406 222-381 (394)
153 PRK11663 regulatory protein Uh 99.1 7.7E-10 1.7E-14 117.1 16.1 173 253-434 248-427 (434)
154 PRK11128 putative 3-phenylprop 99.1 1.2E-09 2.7E-14 113.6 16.6 140 257-400 214-357 (382)
155 PF11700 ATG22: Vacuole efflux 99.1 1.4E-09 3.1E-14 114.7 16.9 179 248-434 281-470 (477)
156 PRK12307 putative sialic acid 99.1 1.2E-09 2.5E-14 115.6 16.4 132 267-399 250-384 (426)
157 PRK09952 shikimate transporter 99.1 2E-09 4.3E-14 114.0 17.6 168 260-434 262-435 (438)
158 PRK10077 xylE D-xylose transpo 99.1 1.7E-09 3.6E-14 116.3 17.2 165 264-436 287-462 (479)
159 KOG0569 Permease of the major 99.1 4.2E-09 9.1E-14 109.2 19.0 167 263-438 285-461 (485)
160 TIGR00891 2A0112 putative sial 99.1 9.7E-10 2.1E-14 115.2 14.7 132 266-400 256-392 (405)
161 PF05977 MFS_3: Transmembrane 99.1 1.6E-09 3.4E-14 115.6 16.2 152 264-426 234-389 (524)
162 TIGR00895 2A0115 benzoate tran 99.1 1.2E-09 2.6E-14 114.1 14.5 137 256-395 258-397 (398)
163 PF01770 Folate_carrier: Reduc 99.1 4.5E-08 9.8E-13 99.0 24.8 162 265-436 20-186 (412)
164 TIGR00900 2A0121 H+ Antiporter 99.1 1.1E-09 2.4E-14 112.9 13.8 128 269-399 232-364 (365)
165 PRK11273 glpT sn-glycerol-3-ph 99.1 2.4E-09 5.3E-14 114.0 16.7 170 250-428 255-432 (452)
166 COG2814 AraJ Arabinose efflux 99.1 4.4E-09 9.6E-14 105.7 17.1 175 246-432 209-387 (394)
167 PRK15075 citrate-proton sympor 99.1 4.1E-09 9E-14 111.6 16.6 141 259-399 249-395 (434)
168 COG2271 UhpC Sugar phosphate p 99.1 2.7E-09 5.8E-14 106.0 13.9 177 248-433 252-436 (448)
169 TIGR00887 2A0109 phosphate:H+ 99.0 7.2E-09 1.6E-13 111.9 17.5 173 262-436 302-493 (502)
170 PRK10504 putative transporter; 99.0 6.3E-09 1.4E-13 111.6 16.2 149 251-399 264-416 (471)
171 TIGR02718 sider_RhtX_FptX side 99.0 5.5E-09 1.2E-13 109.1 15.1 160 258-425 218-385 (390)
172 TIGR00896 CynX cyanate transpo 99.0 9.1E-09 2E-13 105.9 15.4 136 261-400 210-350 (355)
173 TIGR02332 HpaX 4-hydroxyphenyl 99.0 7E-09 1.5E-13 109.0 14.4 160 250-419 244-409 (412)
174 TIGR00882 2A0105 oligosacchari 99.0 6.4E-09 1.4E-13 108.8 14.0 149 270-429 237-393 (396)
175 TIGR00712 glpT glycerol-3-phos 99.0 7E-09 1.5E-13 110.0 14.4 166 261-435 264-437 (438)
176 KOG0637 Sucrose transporter an 99.0 1.7E-08 3.7E-13 101.0 15.8 145 248-395 32-202 (498)
177 PRK10213 nepI ribonucleoside t 99.0 2.4E-08 5.3E-13 104.2 17.6 141 271-423 240-383 (394)
178 PRK11646 multidrug resistance 99.0 9.9E-09 2.2E-13 107.3 14.7 154 268-428 228-385 (400)
179 PRK08633 2-acyl-glycerophospho 99.0 6.8E-09 1.5E-13 124.0 15.2 130 265-397 249-383 (1146)
180 PRK10054 putative transporter; 99.0 5.5E-09 1.2E-13 109.1 12.6 149 277-436 238-389 (395)
181 COG2270 Permeases of the major 98.9 7.1E-09 1.5E-13 103.2 12.3 148 250-400 254-405 (438)
182 KOG4686 Predicted sugar transp 98.9 1.5E-08 3.2E-13 94.6 13.3 145 274-427 291-439 (459)
183 PRK10091 MFS transport protein 98.9 3E-08 6.6E-13 103.1 16.8 147 272-430 224-375 (382)
184 PRK10406 alpha-ketoglutarate t 98.9 4.1E-08 8.9E-13 103.9 17.2 160 261-428 256-421 (432)
185 TIGR00792 gph sugar (Glycoside 98.9 2.2E-08 4.9E-13 106.2 15.1 142 255-399 229-381 (437)
186 PRK15402 multidrug efflux syst 98.9 3.5E-08 7.6E-13 103.6 16.3 130 269-399 236-371 (406)
187 PRK14995 methyl viologen resis 98.9 1.5E-08 3.2E-13 109.2 13.7 143 255-397 266-412 (495)
188 KOG2504 Monocarboxylate transp 98.9 1.3E-08 2.9E-13 108.0 13.0 171 248-428 298-473 (509)
189 TIGR00898 2A0119 cation transp 98.9 2E-08 4.4E-13 108.7 14.3 147 275-436 350-499 (505)
190 PF03825 Nuc_H_symport: Nucleo 98.9 4.5E-08 9.8E-13 101.3 15.8 180 250-434 209-398 (400)
191 TIGR00711 efflux_EmrB drug res 98.9 1.8E-08 4E-13 108.4 13.4 143 255-397 262-409 (485)
192 PRK11010 ampG muropeptide tran 98.9 4.5E-08 9.7E-13 105.1 16.2 155 270-433 244-404 (491)
193 PF03092 BT1: BT1 family; Int 98.9 9.4E-08 2E-12 100.4 18.0 273 269-589 11-299 (433)
194 PRK06814 acylglycerophosphoeth 98.9 2.3E-08 4.9E-13 119.3 14.6 144 254-397 231-395 (1140)
195 PRK15034 nitrate/nitrite trans 98.8 5.1E-08 1.1E-12 101.6 15.0 162 264-433 268-456 (462)
196 TIGR01272 gluP glucose/galacto 98.8 7.8E-08 1.7E-12 96.6 15.4 148 247-400 139-292 (310)
197 PF06813 Nodulin-like: Nodulin 98.8 1.2E-07 2.7E-12 90.2 14.7 146 247-395 2-154 (250)
198 PLN00028 nitrate transmembrane 98.8 5.1E-08 1.1E-12 104.4 12.7 149 267-428 271-430 (476)
199 PRK11195 lysophospholipid tran 98.8 2E-07 4.4E-12 97.3 16.9 123 270-395 227-353 (393)
200 TIGR00881 2A0104 phosphoglycer 98.8 5.8E-08 1.3E-12 100.6 12.1 152 251-406 219-377 (379)
201 TIGR00903 2A0129 major facilit 98.7 2.2E-07 4.9E-12 95.7 16.0 165 251-433 195-366 (368)
202 COG2223 NarK Nitrate/nitrite t 98.7 1.4E-07 2.9E-12 94.2 12.8 170 248-430 221-400 (417)
203 TIGR00901 2A0125 AmpG-related 98.7 1E-07 2.3E-12 98.1 12.5 128 255-382 216-355 (356)
204 TIGR00894 2A0114euk Na(+)-depe 98.7 2.2E-07 4.8E-12 99.4 15.2 176 247-428 260-447 (465)
205 PF06963 FPN1: Ferroportin1 (F 98.7 6.9E-06 1.5E-10 84.9 25.2 302 250-589 4-337 (432)
206 COG0477 ProP Permeases of the 98.7 4E-07 8.8E-12 90.9 15.6 156 258-420 12-174 (338)
207 TIGR00710 efflux_Bcr_CflA drug 98.7 5.8E-07 1.3E-11 93.5 17.0 129 266-396 224-359 (385)
208 PRK09848 glucuronide transport 98.7 1.8E-07 3.8E-12 99.6 13.1 146 251-397 231-387 (448)
209 COG2807 CynX Cyanate permease 98.7 6.9E-07 1.5E-11 87.3 15.7 172 250-432 210-386 (395)
210 PF13347 MFS_2: MFS/sugar tran 98.7 3.5E-07 7.5E-12 96.8 15.0 148 248-397 225-383 (428)
211 PF07690 MFS_1: Major Facilita 98.7 8E-08 1.7E-12 98.5 9.9 134 256-389 214-352 (352)
212 PRK11102 bicyclomycin/multidru 98.6 1E-06 2.2E-11 91.5 17.1 130 264-394 210-345 (377)
213 PF01306 LacY_symp: LacY proto 98.6 7.3E-07 1.6E-11 90.9 15.3 156 271-437 243-406 (412)
214 PRK11902 ampG muropeptide tran 98.6 5.7E-07 1.2E-11 94.3 15.0 142 272-427 234-386 (402)
215 PRK10473 multidrug efflux syst 98.6 1E-06 2.2E-11 92.1 16.6 123 271-399 226-350 (392)
216 TIGR00769 AAA ADP/ATP carrier 98.6 2.6E-05 5.6E-10 81.7 26.2 145 248-396 7-189 (472)
217 PRK10429 melibiose:sodium symp 98.6 3E-07 6.6E-12 98.4 12.2 145 253-397 236-392 (473)
218 PRK10133 L-fucose transporter; 98.6 7.3E-07 1.6E-11 94.3 14.0 124 270-399 280-408 (438)
219 PRK09669 putative symporter Ya 98.6 1E-06 2.2E-11 93.7 15.1 117 282-399 263-389 (444)
220 PRK11043 putative transporter; 98.5 2.6E-06 5.5E-11 89.3 16.9 128 268-397 223-356 (401)
221 TIGR00924 yjdL_sub1_fam amino 98.5 2.4E-06 5.1E-11 91.4 16.8 173 250-430 274-467 (475)
222 KOG3764 Vesicular amine transp 98.5 2.1E-07 4.6E-12 91.6 7.5 166 251-427 273-450 (464)
223 TIGR00926 2A1704 Peptide:H+ sy 98.5 3.4E-05 7.3E-10 84.6 24.2 149 275-428 15-179 (654)
224 PRK11652 emrD multidrug resist 98.5 3.4E-06 7.3E-11 88.2 15.9 128 268-397 227-359 (394)
225 KOG3762 Predicted transporter 98.5 6.3E-07 1.4E-11 91.6 9.8 163 254-427 377-543 (618)
226 KOG0253 Synaptic vesicle trans 98.5 6.8E-07 1.5E-11 87.0 9.3 125 293-430 391-518 (528)
227 PF03209 PUCC: PUCC protein; 98.5 4.1E-06 8.9E-11 84.0 14.7 168 259-426 219-393 (403)
228 KOG3098 Uncharacterized conser 98.4 6.7E-05 1.5E-09 77.6 23.0 104 289-395 56-161 (461)
229 TIGR00788 fbt folate/biopterin 98.4 1.3E-06 2.9E-11 93.0 9.3 125 276-400 281-415 (468)
230 TIGR00885 fucP L-fucose:H+ sym 98.3 9.6E-06 2.1E-10 85.0 14.8 142 251-398 235-381 (410)
231 TIGR00886 2A0108 nitrite extru 98.3 3.4E-06 7.3E-11 87.1 9.9 119 265-384 242-365 (366)
232 PRK11462 putative transporter; 98.3 1.4E-05 3E-10 85.1 14.4 116 281-397 261-386 (460)
233 PF06779 DUF1228: Protein of u 98.3 4.1E-06 8.8E-11 64.5 7.3 78 261-341 5-83 (85)
234 KOG2532 Permease of the major 98.2 8.8E-06 1.9E-10 85.6 12.1 177 248-430 258-446 (466)
235 PF12832 MFS_1_like: MFS_1 lik 98.2 3.8E-06 8.2E-11 64.2 6.8 66 255-320 7-72 (77)
236 KOG4332 Predicted sugar transp 98.2 1.7E-05 3.7E-10 73.9 11.2 105 258-365 47-154 (454)
237 PRK09584 tppB putative tripept 98.2 5E-05 1.1E-09 81.7 16.6 110 285-394 318-440 (500)
238 KOG0254 Predicted transporter 98.2 4.4E-05 9.6E-10 82.6 16.2 180 249-437 296-489 (513)
239 KOG0252 Inorganic phosphate tr 98.2 6E-06 1.3E-10 83.1 8.5 185 248-438 304-504 (538)
240 TIGR01301 GPH_sucrose GPH fami 98.2 6.8E-05 1.5E-09 79.0 16.6 182 249-436 259-476 (477)
241 COG2211 MelB Na+/melibiose sym 98.1 4.6E-05 9.9E-10 78.8 14.0 147 249-396 237-394 (467)
242 PRK15403 multidrug efflux syst 98.1 0.00013 2.9E-09 76.6 17.5 137 261-398 231-373 (413)
243 KOG3574 Acetyl-CoA transporter 98.1 0.00018 4E-09 70.7 16.6 266 247-565 30-321 (510)
244 PF02487 CLN3: CLN3 protein; 98.1 0.0003 6.5E-09 71.6 18.6 136 285-435 61-199 (402)
245 PRK10207 dipeptide/tripeptide 98.1 7.8E-05 1.7E-09 79.9 15.3 136 260-395 281-438 (489)
246 PF05978 UNC-93: Ion channel r 98.1 8.4E-05 1.8E-09 65.4 12.8 106 287-395 41-148 (156)
247 COG0738 FucP Fucose permease [ 98.0 8.1E-05 1.8E-09 74.3 12.9 149 246-400 234-386 (422)
248 PF00083 Sugar_tr: Sugar (and 98.0 9.8E-08 2.1E-12 101.8 -9.2 166 263-438 268-443 (451)
249 PF13000 Acatn: Acetyl-coenzym 97.8 0.0028 6E-08 65.3 19.5 290 251-565 3-334 (544)
250 PF03219 TLC: TLC ATP/ADP tran 97.8 0.0082 1.8E-07 63.5 23.5 117 281-397 56-205 (491)
251 PF12832 MFS_1_like: MFS_1 lik 97.8 0.00018 3.9E-09 55.0 8.1 72 511-584 3-74 (77)
252 KOG2533 Permease of the major 97.7 0.00031 6.7E-09 74.4 11.4 140 248-390 273-422 (495)
253 PRK15462 dipeptide/tripeptide 97.6 0.00032 7E-09 74.3 10.8 85 508-593 9-94 (493)
254 KOG2615 Permease of the major 97.6 0.00069 1.5E-08 67.1 11.8 118 276-396 290-412 (451)
255 KOG0255 Synaptic vesicle trans 97.6 0.0017 3.8E-08 70.5 16.1 160 266-437 336-498 (521)
256 KOG2816 Predicted transporter 97.4 0.0013 2.9E-08 69.1 11.6 116 277-395 271-389 (463)
257 KOG3810 Micronutrient transpor 97.4 0.0029 6.2E-08 61.8 12.8 100 294-396 53-154 (433)
258 PF06609 TRI12: Fungal trichot 97.4 0.0017 3.6E-08 69.9 12.4 147 248-395 310-464 (599)
259 PTZ00207 hypothetical protein; 97.3 0.0039 8.4E-08 67.5 14.6 184 248-435 353-556 (591)
260 COG3202 ATP/ADP translocase [E 97.3 0.19 4.1E-06 52.2 24.6 147 247-397 26-209 (509)
261 PRK03612 spermidine synthase; 97.2 0.0063 1.4E-07 65.4 14.8 118 277-395 44-168 (521)
262 PF00854 PTR2: POT family; In 97.0 0.0023 5.1E-08 66.2 8.7 107 313-427 2-119 (372)
263 KOG3097 Predicted membrane pro 96.9 0.12 2.5E-06 50.5 17.9 100 293-395 68-180 (390)
264 KOG2563 Permease of the major 96.8 0.0031 6.8E-08 64.0 7.5 133 274-406 292-429 (480)
265 KOG3762 Predicted transporter 96.7 0.0005 1.1E-08 71.0 0.9 99 255-353 18-129 (618)
266 KOG1237 H+/oligopeptide sympor 96.6 0.045 9.7E-07 59.3 14.5 161 243-406 32-225 (571)
267 COG3104 PTR2 Dipeptide/tripept 96.5 0.061 1.3E-06 55.8 14.4 141 284-432 325-488 (498)
268 TIGR00939 2a57 Equilibrative N 96.3 1.4 2.9E-05 46.5 23.0 93 337-436 105-200 (437)
269 TIGR00806 rfc RFC reduced fola 96.2 0.024 5.2E-07 59.1 9.2 80 531-614 48-128 (511)
270 KOG1479 Nucleoside transporter 96.1 0.97 2.1E-05 46.2 20.1 170 257-436 27-208 (406)
271 PF05631 DUF791: Protein of un 96.1 0.043 9.3E-07 54.7 10.2 76 537-617 62-137 (354)
272 PF06779 DUF1228: Protein of u 96.0 0.043 9.4E-07 42.4 7.7 72 523-596 7-78 (85)
273 PF02487 CLN3: CLN3 protein; 96.0 0.11 2.4E-06 53.2 12.9 112 281-396 279-395 (402)
274 KOG3098 Uncharacterized conser 95.8 0.24 5.2E-06 51.7 14.4 144 251-395 243-411 (461)
275 PF06963 FPN1: Ferroportin1 (F 95.7 0.62 1.3E-05 48.6 17.3 129 267-395 277-415 (432)
276 PF03092 BT1: BT1 family; Int 95.5 0.036 7.8E-07 58.5 7.3 156 280-436 252-417 (433)
277 KOG4830 Predicted sugar transp 95.4 0.003 6.5E-08 58.9 -0.9 67 250-316 19-94 (412)
278 TIGR00805 oat sodium-independe 95.2 0.032 6.9E-07 61.9 6.2 77 518-595 42-118 (633)
279 KOG1330 Sugar transporter/spin 93.7 0.11 2.3E-06 53.5 5.4 79 534-616 58-136 (493)
280 KOG4460 Nuclear pore complex, 93.3 2.5 5.5E-05 43.7 14.1 114 5-126 560-687 (741)
281 TIGR00880 2_A_01_02 Multidrug 93.1 0.073 1.6E-06 45.6 2.8 45 551-596 5-49 (141)
282 KOG2325 Predicted transporter/ 92.9 0.29 6.3E-06 51.4 7.1 106 510-616 36-145 (488)
283 PF06813 Nodulin-like: Nodulin 92.7 0.39 8.5E-06 46.1 7.4 62 531-594 24-85 (250)
284 TIGR00939 2a57 Equilibrative N 92.4 1.6 3.5E-05 45.9 12.2 110 285-395 309-431 (437)
285 PF09602 PhaP_Bmeg: Polyhydrox 91.8 8.4 0.00018 33.7 13.4 72 64-135 81-152 (165)
286 COG4262 Predicted spermidine s 90.2 8.1 0.00018 38.4 13.2 90 274-363 33-132 (508)
287 TIGR00926 2A1704 Peptide:H+ sy 89.7 0.83 1.8E-05 50.6 7.1 71 524-595 3-74 (654)
288 KOG1479 Nucleoside transporter 89.0 4.2 9.1E-05 41.7 10.9 129 264-393 259-400 (406)
289 PF07672 MFS_Mycoplasma: Mycop 88.4 1.9 4.2E-05 41.1 7.5 56 368-429 2-60 (267)
290 KOG0637 Sucrose transporter an 86.8 1 2.2E-05 46.4 5.0 111 287-400 336-472 (498)
291 KOG3880 Predicted small molecu 85.8 6.3 0.00014 38.6 9.4 137 285-436 64-204 (409)
292 PF10168 Nup88: Nuclear pore c 85.2 24 0.00052 39.6 15.0 44 70-114 609-652 (717)
293 PF03137 OATP: Organic Anion T 82.1 0.43 9.2E-06 51.7 0.0 74 522-596 16-89 (539)
294 PF10146 zf-C4H2: Zinc finger- 80.5 36 0.00078 32.2 12.1 93 15-120 5-100 (230)
295 PF05978 UNC-93: Ion channel r 80.3 13 0.00028 32.8 8.7 62 551-617 44-105 (156)
296 PF10112 Halogen_Hydrol: 5-bro 79.9 21 0.00045 33.0 10.5 41 102-142 116-156 (199)
297 PF01733 Nucleoside_tran: Nucl 79.7 0.61 1.3E-05 46.7 0.2 108 287-394 186-306 (309)
298 PF01770 Folate_carrier: Reduc 78.8 13 0.00029 38.4 9.5 95 281-378 283-382 (412)
299 KOG2601 Iron transporter [Inor 77.2 34 0.00074 34.7 11.2 149 251-399 30-202 (503)
300 KOG0977 Nuclear envelope prote 77.0 20 0.00043 38.2 10.2 38 96-137 351-388 (546)
301 TIGR01837 PHA_granule_1 poly(h 76.3 30 0.00065 28.9 9.2 25 91-115 93-117 (118)
302 TIGR00844 c_cpa1 na(+)/h(+) an 75.8 1.5E+02 0.0032 33.7 18.4 6 567-572 228-233 (810)
303 PRK11020 hypothetical protein; 75.7 33 0.00071 27.8 8.6 50 69-118 6-55 (118)
304 KOG3880 Predicted small molecu 74.1 9.7 0.00021 37.4 6.5 105 283-395 288-401 (409)
305 PF05149 Flagellar_rod: Parafl 72.5 88 0.0019 30.6 12.6 40 96-135 114-153 (289)
306 PF05461 ApoL: Apolipoprotein 71.9 61 0.0013 32.3 11.8 60 22-89 34-93 (313)
307 PF13758 Prefoldin_3: Prefoldi 71.8 6.6 0.00014 31.1 4.0 24 12-35 3-26 (99)
308 PF04420 CHD5: CHD5-like prote 71.3 20 0.00044 31.8 7.5 67 69-135 41-107 (161)
309 COG0477 ProP Permeases of the 70.9 30 0.00066 33.3 9.9 44 544-588 39-82 (338)
310 KOG1664 Vacuolar H+-ATPase V1 70.5 70 0.0015 29.1 10.4 77 52-131 41-117 (220)
311 PF07889 DUF1664: Protein of u 68.9 41 0.0009 28.3 8.3 66 48-113 41-108 (126)
312 COG1230 CzcD Co/Zn/Cd efflux s 68.9 1.2E+02 0.0027 29.8 13.2 59 251-315 28-89 (296)
313 PRK00293 dipZ thiol:disulfide 68.3 1.3E+02 0.0029 32.9 14.6 15 543-557 324-338 (571)
314 PF10498 IFT57: Intra-flagella 67.6 45 0.00098 33.9 10.0 21 14-34 216-236 (359)
315 KOG3626 Organic anion transpor 67.5 19 0.0004 40.2 7.7 64 248-311 392-457 (735)
316 PF03915 AIP3: Actin interacti 67.3 1E+02 0.0022 32.1 12.6 82 49-130 201-282 (424)
317 PRK11469 hypothetical protein; 66.4 1.1E+02 0.0023 28.1 14.4 53 540-592 130-182 (188)
318 KOG4332 Predicted sugar transp 65.8 3.9 8.4E-05 39.1 1.9 57 532-589 60-116 (454)
319 PF04799 Fzo_mitofusin: fzo-li 65.5 77 0.0017 28.2 9.6 56 49-113 108-163 (171)
320 PF14193 DUF4315: Domain of un 65.1 39 0.00084 26.1 6.8 33 53-89 4-36 (83)
321 PF10267 Tmemb_cc2: Predicted 65.0 57 0.0012 33.5 10.1 35 55-89 238-272 (395)
322 smart00806 AIP3 Actin interact 64.5 1.2E+02 0.0026 31.3 12.1 80 49-128 205-284 (426)
323 PF11947 DUF3464: Protein of u 63.7 14 0.00029 32.3 4.7 50 337-387 96-145 (153)
324 PF10805 DUF2730: Protein of u 63.7 49 0.0011 27.0 7.7 44 69-115 43-86 (106)
325 KOG3810 Micronutrient transpor 62.9 97 0.0021 31.4 10.8 139 286-430 274-420 (433)
326 KOG3838 Mannose lectin ERGIC-5 61.3 1.5E+02 0.0033 30.0 11.7 34 94-127 377-410 (497)
327 COG4026 Uncharacterized protei 61.2 58 0.0013 29.9 8.2 48 69-116 164-213 (290)
328 TIGR01834 PHA_synth_III_E poly 61.2 1.4E+02 0.003 29.7 11.6 58 58-115 253-310 (320)
329 KOG3574 Acetyl-CoA transporter 60.4 71 0.0015 32.7 9.5 139 259-399 276-432 (510)
330 PRK11546 zraP zinc resistance 59.5 1E+02 0.0022 26.6 9.1 58 57-114 50-109 (143)
331 PF12805 FUSC-like: FUSC-like 59.4 41 0.00089 33.1 8.0 24 413-436 78-101 (284)
332 TIGR01666 YCCS hypothetical me 58.7 62 0.0013 36.4 9.9 50 302-353 42-96 (704)
333 COG1971 Predicted membrane pro 58.6 1.4E+02 0.0031 27.1 15.5 52 542-593 134-185 (190)
334 PHA02675 ORF104 fusion protein 57.9 81 0.0018 23.9 7.5 37 102-138 52-88 (90)
335 PF02694 UPF0060: Uncharacteri 56.8 1.1E+02 0.0023 24.9 9.3 52 544-596 54-105 (107)
336 TIGR01667 YCCS_YHJK integral m 56.4 56 0.0012 36.8 9.1 52 300-353 40-96 (701)
337 PF09712 PHA_synth_III_E: Poly 56.2 1.5E+02 0.0033 29.2 11.2 47 69-115 247-293 (293)
338 COG3937 Uncharacterized conser 56.0 1.1E+02 0.0023 24.8 9.4 83 22-115 22-104 (108)
339 PRK10263 DNA translocase FtsK; 55.9 26 0.00057 41.4 6.6 12 384-395 143-154 (1355)
340 KOG4466 Component of histone d 55.6 1.3E+02 0.0028 28.9 9.8 41 49-90 16-57 (291)
341 COG5293 Predicted ATPase [Gene 54.7 99 0.0021 31.9 9.4 37 50-86 313-353 (591)
342 PF01544 CorA: CorA-like Mg2+ 54.3 1.8E+02 0.004 28.3 11.9 64 59-129 116-179 (292)
343 cd07633 BAR_OPHN1 The Bin/Amph 53.7 1.8E+02 0.0039 26.8 10.2 25 111-135 96-120 (207)
344 PTZ00332 paraflagellar rod pro 52.2 2.8E+02 0.006 29.2 12.2 39 97-135 373-411 (589)
345 PRK03612 spermidine synthase; 52.1 3.4E+02 0.0074 29.4 17.3 30 546-575 147-176 (521)
346 PF07672 MFS_Mycoplasma: Mycop 51.5 71 0.0015 30.8 7.6 102 286-387 144-254 (267)
347 PRK05771 V-type ATP synthase s 51.4 3.9E+02 0.0085 29.9 33.2 37 99-135 213-249 (646)
348 TIGR02840 spore_YtaF putative 51.3 2.1E+02 0.0045 26.6 14.8 49 540-589 153-203 (206)
349 TIGR00383 corA magnesium Mg(2+ 50.6 2.7E+02 0.0058 27.8 13.3 62 62-130 143-204 (318)
350 KOG1278 Endosomal membrane pro 50.6 2.2E+02 0.0047 30.6 11.4 57 367-423 358-414 (628)
351 KOG3850 Predicted membrane pro 50.5 1.7E+02 0.0037 29.5 10.1 59 23-89 262-320 (455)
352 KOG2629 Peroxisomal membrane a 49.3 1.7E+02 0.0036 28.4 9.6 20 14-33 81-111 (300)
353 PF13000 Acatn: Acetyl-coenzym 49.0 1.1E+02 0.0025 32.5 9.3 46 346-391 413-460 (544)
354 COG5336 Uncharacterized protei 48.8 47 0.001 26.8 5.0 26 551-577 49-75 (116)
355 smart00787 Spc7 Spc7 kinetocho 48.7 2.9E+02 0.0062 27.6 11.8 20 11-32 132-151 (312)
356 KOG4094 Uncharacterized conser 48.7 41 0.00089 28.5 4.9 10 22-31 58-67 (178)
357 PF07352 Phage_Mu_Gam: Bacteri 48.5 81 0.0018 27.5 7.2 38 49-86 20-57 (149)
358 PF10498 IFT57: Intra-flagella 48.2 2.4E+02 0.0053 28.8 11.4 21 18-38 217-237 (359)
359 COG3619 Predicted membrane pro 47.1 2.5E+02 0.0055 26.5 17.5 26 375-400 171-196 (226)
360 TIGR02231 conserved hypothetic 46.8 1.2E+02 0.0026 33.0 9.7 66 22-87 72-157 (525)
361 PF05597 Phasin: Poly(hydroxya 46.6 1.9E+02 0.004 24.7 10.0 25 91-115 106-130 (132)
362 TIGR02230 ATPase_gene1 F0F1-AT 46.0 74 0.0016 25.6 5.8 27 374-400 45-71 (100)
363 KOG0396 Uncharacterized conser 45.7 1.2E+02 0.0026 30.5 8.3 22 14-35 7-28 (389)
364 PF02252 PA28_beta: Proteasome 44.7 2.2E+02 0.0047 25.0 11.5 69 14-82 20-88 (150)
365 PF09403 FadA: Adhesion protei 44.6 1.9E+02 0.0042 24.4 9.3 36 52-87 29-64 (126)
366 PRK11637 AmiB activator; Provi 44.1 2.9E+02 0.0062 29.1 11.8 13 301-313 310-322 (428)
367 COG5336 Uncharacterized protei 43.5 55 0.0012 26.4 4.6 25 292-316 51-76 (116)
368 PF06912 DUF1275: Protein of u 43.5 2.7E+02 0.0058 25.7 17.2 26 374-399 164-189 (209)
369 PRK02237 hypothetical protein; 43.1 1.8E+02 0.0039 23.6 10.8 52 544-596 56-107 (109)
370 KOG4302 Microtubule-associated 42.9 3.4E+02 0.0073 30.1 12.0 93 50-145 290-394 (660)
371 KOG2150 CCR4-NOT transcription 42.7 2.7E+02 0.0058 30.0 10.7 11 25-35 46-56 (575)
372 PF08317 Spc7: Spc7 kinetochor 42.5 3.7E+02 0.008 27.0 12.3 25 6-32 132-156 (325)
373 PRK10884 SH3 domain-containing 42.4 2E+02 0.0043 26.7 9.0 29 57-85 107-135 (206)
374 KOG1451 Oligophrenin-1 and rel 42.2 3E+02 0.0064 29.7 10.8 18 15-32 7-24 (812)
375 KOG0933 Structural maintenance 41.6 5.4E+02 0.012 30.0 13.3 34 102-135 907-940 (1174)
376 PF11414 Suppressor_APC: Adeno 41.6 1.7E+02 0.0036 22.7 7.0 29 54-82 18-49 (84)
377 PF01733 Nucleoside_tran: Nucl 41.3 8.9 0.00019 38.4 0.0 17 549-565 187-203 (309)
378 PF01581 FARP: FMRFamide relat 40.8 10 0.00022 17.0 0.1 6 1-6 6-11 (11)
379 PRK00578 prfB peptide chain re 40.4 4.2E+02 0.0092 27.1 11.9 91 18-114 20-112 (367)
380 PF07384 DUF1497: Protein of u 40.2 97 0.0021 20.8 4.6 24 58-81 31-54 (59)
381 PF12018 DUF3508: Domain of un 40.2 3.7E+02 0.008 26.4 11.7 86 49-135 61-149 (281)
382 PF06379 RhaT: L-rhamnose-prot 39.6 4.1E+02 0.0089 26.7 19.5 89 243-331 30-120 (344)
383 cd07637 BAR_ACAP3 The Bin/Amph 39.4 3.1E+02 0.0068 25.3 11.5 68 52-121 11-81 (200)
384 PRK14162 heat shock protein Gr 39.3 3.1E+02 0.0067 25.2 10.1 15 121-135 119-133 (194)
385 PF02990 EMP70: Endomembrane p 38.9 1.6E+02 0.0035 31.9 9.2 42 365-406 290-331 (521)
386 PF00901 Orbi_VP5: Orbivirus o 38.9 5E+02 0.011 27.5 11.8 40 48-87 110-152 (508)
387 COG0598 CorA Mg2+ and Co2+ tra 38.6 4.2E+02 0.0091 26.6 14.2 65 61-132 147-211 (322)
388 PF10168 Nup88: Nuclear pore c 38.2 3.5E+02 0.0076 30.7 11.7 67 47-114 633-705 (717)
389 PF06825 HSBP1: Heat shock fac 38.2 1.3E+02 0.0029 21.0 5.3 41 49-89 9-49 (54)
390 KOG2881 Predicted membrane pro 37.9 1.3E+02 0.0029 28.7 7.0 24 562-585 257-280 (294)
391 PRK15015 carbon starvation pro 37.5 6.2E+02 0.013 28.2 17.4 97 292-394 10-110 (701)
392 PF02990 EMP70: Endomembrane p 37.5 4.3E+02 0.0094 28.7 12.1 23 551-574 304-326 (521)
393 KOG0447 Dynamin-like GTP bindi 37.2 3.4E+02 0.0074 29.1 10.4 61 49-113 232-294 (980)
394 PRK14163 heat shock protein Gr 37.0 3.5E+02 0.0077 25.2 9.7 15 121-135 113-127 (214)
395 PF05300 DUF737: Protein of un 36.8 2.6E+02 0.0056 25.5 8.5 34 50-83 134-170 (187)
396 PF08580 KAR9: Yeast cortical 36.7 2.4E+02 0.0052 31.6 10.1 47 49-95 223-269 (683)
397 PRK09776 putative diguanylate 36.7 8.1E+02 0.018 29.3 18.5 12 384-395 112-123 (1092)
398 COG1345 FliD Flagellar capping 36.6 1.8E+02 0.0038 31.1 8.7 14 21-34 372-385 (483)
399 PF13097 CENP-U: CENP-A nucleo 36.6 3.1E+02 0.0068 24.5 9.8 67 58-132 105-173 (175)
400 PF04341 DUF485: Protein of un 36.2 2E+02 0.0043 22.6 7.0 57 498-554 6-62 (91)
401 PF07760 DUF1616: Protein of u 36.0 2.1E+02 0.0045 28.2 8.7 56 341-396 22-78 (287)
402 PF03114 BAR: BAR domain; Int 35.9 3.5E+02 0.0076 24.9 10.9 22 111-132 201-222 (229)
403 KOG1281 Na+/dicarboxylate, Na+ 35.7 22 0.00048 38.0 1.9 34 106-139 7-40 (586)
404 KOG1118 Lysophosphatidic acid 35.6 1.1E+02 0.0024 29.9 6.1 18 47-64 192-209 (366)
405 KOG3097 Predicted membrane pro 35.3 25 0.00055 35.0 2.0 74 281-354 308-383 (390)
406 PF04420 CHD5: CHD5-like prote 35.2 1.2E+02 0.0026 26.9 6.2 23 18-40 37-59 (161)
407 PRK14139 heat shock protein Gr 35.1 3.3E+02 0.0071 24.8 8.9 15 121-135 110-124 (185)
408 PF06705 SF-assemblin: SF-asse 35.0 4.1E+02 0.0089 25.4 10.4 93 23-115 36-135 (247)
409 COG2962 RarD Predicted permeas 34.9 4.5E+02 0.0097 25.8 10.8 84 498-592 61-144 (293)
410 PF01025 GrpE: GrpE; InterPro 34.7 3.2E+02 0.007 24.1 11.9 37 51-87 19-55 (165)
411 KOG2601 Iron transporter [Inor 34.0 2.8E+02 0.0061 28.5 8.9 73 507-580 26-98 (503)
412 PF07304 SRA1: Steroid recepto 33.9 2E+02 0.0044 25.4 7.3 40 47-86 43-83 (157)
413 PF07159 DUF1394: Protein of u 33.8 3.5E+02 0.0076 26.8 9.6 42 43-85 55-96 (303)
414 COG1268 BioY Uncharacterized c 33.7 1.1E+02 0.0024 27.8 5.7 28 289-316 88-116 (184)
415 PF12630 Pox_polyA_pol_N: Poxv 33.6 1E+02 0.0022 24.8 4.7 62 108-172 27-90 (108)
416 TIGR01069 mutS2 MutS2 family p 33.6 4.1E+02 0.0089 30.5 11.5 15 119-133 593-607 (771)
417 TIGR02865 spore_II_E stage II 33.5 2.8E+02 0.006 31.8 10.2 37 96-132 442-478 (764)
418 KOG3758 Uncharacterized conser 33.3 4.4E+02 0.0096 28.7 10.7 30 102-133 165-194 (655)
419 PF10398 DUF2443: Protein of u 33.3 1.4E+02 0.003 22.2 4.9 21 42-62 42-62 (79)
420 PRK10263 DNA translocase FtsK; 33.2 2.4E+02 0.0053 33.9 9.6 39 554-593 141-179 (1355)
421 PF10136 SpecificRecomb: Site- 33.1 7.2E+02 0.016 27.7 16.9 52 4-55 80-134 (643)
422 PF03904 DUF334: Domain of unk 33.1 4.1E+02 0.009 24.9 14.2 66 57-137 46-111 (230)
423 PRK14147 heat shock protein Gr 33.0 3.6E+02 0.0079 24.2 10.0 14 122-135 97-110 (172)
424 PF04849 HAP1_N: HAP1 N-termin 32.9 4.1E+02 0.009 26.3 9.8 22 17-38 156-177 (306)
425 PF06826 Asp-Al_Ex: Predicted 32.8 2.6E+02 0.0056 25.0 7.9 40 284-324 57-96 (169)
426 TIGR00769 AAA ADP/ATP carrier 32.6 6.4E+02 0.014 26.9 14.9 48 356-406 286-334 (472)
427 KOG1277 Endosomal membrane pro 32.1 3.7E+02 0.008 28.1 9.5 41 358-400 315-355 (593)
428 TIGR01837 PHA_granule_1 poly(h 31.8 1.7E+02 0.0037 24.4 6.2 22 67-88 95-116 (118)
429 KOG3807 Predicted membrane pro 31.8 2.9E+02 0.0063 27.5 8.4 26 104-134 315-340 (556)
430 PF06631 DUF1154: Protein of u 30.8 34 0.00073 23.1 1.5 15 121-135 17-31 (47)
431 PF12711 Kinesin-relat_1: Kine 30.4 2.6E+02 0.0057 21.8 6.5 54 24-82 27-84 (86)
432 PF08385 DHC_N1: Dynein heavy 30.4 3.8E+02 0.0083 29.3 10.7 122 14-135 294-440 (579)
433 KOG2203 GTP-binding protein [G 30.4 7.3E+02 0.016 26.9 11.5 28 108-135 391-418 (772)
434 PRK14157 heat shock protein Gr 30.3 4E+02 0.0087 25.1 8.9 13 123-135 152-164 (227)
435 PF12805 FUSC-like: FUSC-like 30.0 3.1E+02 0.0067 26.9 8.9 12 20-31 192-203 (284)
436 KOG0250 DNA repair protein RAD 29.7 4E+02 0.0086 31.2 10.2 11 567-577 1022-1032(1074)
437 KOG2129 Uncharacterized conser 29.6 6.4E+02 0.014 25.9 10.7 67 51-117 191-269 (552)
438 PRK14143 heat shock protein Gr 29.5 5E+02 0.011 24.7 10.3 7 124-130 158-164 (238)
439 COG1283 NptA Na+/phosphate sym 29.2 2.4E+02 0.0053 30.3 8.1 12 23-34 379-390 (533)
440 PF07195 FliD_C: Flagellar hoo 29.1 3E+02 0.0065 26.2 8.3 15 21-35 136-150 (239)
441 COG2119 Predicted membrane pro 29.1 3.8E+02 0.0082 24.3 8.0 71 249-322 101-173 (190)
442 KOG2896 UV radiation resistanc 29.0 6.2E+02 0.014 25.6 10.4 27 97-123 155-181 (377)
443 PF10046 BLOC1_2: Biogenesis o 28.8 3.1E+02 0.0066 22.0 7.5 24 62-85 29-52 (99)
444 COG2233 UraA Xanthine/uracil p 28.7 1.9E+02 0.0041 30.4 7.2 58 251-311 19-77 (451)
445 PF14712 Snapin_Pallidin: Snap 28.7 2.8E+02 0.0062 21.6 7.1 16 66-81 62-77 (92)
446 PF05884 ZYG-11_interact: Inte 28.5 5.8E+02 0.013 25.1 12.2 13 367-379 214-226 (299)
447 COG1079 Uncharacterized ABC-ty 28.3 6E+02 0.013 25.2 12.2 97 295-395 19-117 (304)
448 PF07106 TBPIP: Tat binding pr 28.2 4.3E+02 0.0093 23.5 9.2 79 52-134 74-157 (169)
449 PF09527 ATPase_gene1: Putativ 27.9 1.8E+02 0.0038 20.2 4.9 33 291-323 8-42 (55)
450 TIGR03185 DNA_S_dndD DNA sulfu 27.6 6.9E+02 0.015 28.0 12.1 34 55-88 378-411 (650)
451 PRK13629 threonine/serine tran 27.6 7.5E+02 0.016 26.1 15.2 30 366-395 18-47 (443)
452 PRK14155 heat shock protein Gr 27.1 4.8E+02 0.01 24.3 8.8 15 121-135 96-110 (208)
453 TIGR02230 ATPase_gene1 F0F1-AT 27.0 1.7E+02 0.0038 23.5 5.1 15 561-575 59-73 (100)
454 PHA03332 membrane glycoprotein 26.9 5.2E+02 0.011 30.2 10.3 40 50-89 923-962 (1328)
455 PF05470 eIF-3c_N: Eukaryotic 26.8 2.3E+02 0.0049 31.2 7.7 72 48-135 333-407 (595)
456 COG1422 Predicted membrane pro 26.8 3.1E+02 0.0068 25.1 7.2 36 68-103 72-107 (201)
457 PRK14154 heat shock protein Gr 26.5 5.3E+02 0.011 24.0 10.3 14 122-135 134-147 (208)
458 cd07602 BAR_RhoGAP_OPHN1-like 26.4 5.3E+02 0.011 24.0 11.7 27 54-80 6-32 (207)
459 PF04111 APG6: Autophagy prote 26.4 5E+02 0.011 26.0 9.5 13 73-85 76-88 (314)
460 PRK12585 putative monovalent c 26.2 1.2E+02 0.0026 27.4 4.5 8 531-538 30-37 (197)
461 TIGR00353 nrfE c-type cytochro 26.1 9.1E+02 0.02 26.6 17.5 45 282-326 123-170 (576)
462 PF09236 AHSP: Alpha-haemoglob 26.0 54 0.0012 25.0 2.0 49 13-74 37-85 (89)
463 PRK14156 heat shock protein Gr 26.0 4.8E+02 0.011 23.5 8.4 14 122-135 105-118 (177)
464 PF04740 LXG: LXG domain of WX 25.7 5.2E+02 0.011 23.6 10.6 17 164-180 175-191 (204)
465 PF11299 DUF3100: Protein of u 25.7 57 0.0012 30.6 2.5 49 346-395 179-229 (241)
466 KOG2604 Subunit of cis-Golgi t 25.6 9.6E+02 0.021 26.7 12.3 116 4-134 74-198 (733)
467 PF03885 DUF327: Protein of un 25.5 4.5E+02 0.0097 22.8 9.9 50 49-104 27-76 (147)
468 PF15290 Syntaphilin: Golgi-lo 25.4 5.5E+02 0.012 24.9 8.8 61 26-118 73-134 (305)
469 PF05482 Serendipity_A: Serend 25.3 4.1E+02 0.009 28.5 8.8 20 48-67 135-154 (552)
470 KOG1237 H+/oligopeptide sympor 25.3 2.9E+02 0.0062 30.4 8.2 79 512-591 41-120 (571)
471 PF07168 Ureide_permease: Urei 25.3 3.1E+02 0.0066 27.1 7.3 24 567-591 296-319 (336)
472 PF02659 DUF204: Domain of unk 25.1 2.4E+02 0.0052 20.5 5.4 40 546-585 25-64 (67)
473 KOG0964 Structural maintenance 25.1 1.1E+03 0.025 27.4 15.2 79 54-132 215-303 (1200)
474 PHA03046 Hypothetical protein; 25.0 4.2E+02 0.009 22.3 9.1 55 70-136 86-140 (142)
475 PF08687 ASD2: Apx/Shroom doma 24.8 6.4E+02 0.014 24.4 14.0 77 56-132 136-221 (264)
476 PLN03229 acetyl-coenzyme A car 24.7 9.3E+02 0.02 27.2 11.6 66 52-124 556-631 (762)
477 PRK10869 recombination and rep 24.6 5.6E+02 0.012 28.0 10.3 26 11-36 154-179 (553)
478 KOG3231 Predicted assembly/vac 24.2 4.9E+02 0.011 22.8 8.9 57 50-106 11-67 (208)
479 KOG4451 Uncharacterized conser 23.9 6E+02 0.013 23.7 9.4 70 12-86 20-89 (286)
480 KOG2867 Phosphotyrosyl phospha 23.9 5.6E+02 0.012 25.8 8.9 84 49-132 40-161 (367)
481 COG5019 CDC3 Septin family pro 23.8 3.9E+02 0.0084 27.2 8.0 8 20-27 305-312 (373)
482 KOG2417 Predicted G-protein co 23.7 4.6E+02 0.01 26.4 8.2 30 99-130 261-290 (462)
483 PF10224 DUF2205: Predicted co 23.6 3.4E+02 0.0074 20.8 9.2 55 68-128 16-70 (80)
484 cd07591 BAR_Rvs161p The Bin/Am 23.6 6.2E+02 0.014 23.8 9.6 10 23-32 108-117 (224)
485 PF03904 DUF334: Domain of unk 23.6 6.2E+02 0.013 23.8 11.6 9 24-32 46-54 (230)
486 PF15079 DUF4546: Domain of un 23.5 3E+02 0.0064 24.2 6.1 18 50-67 72-89 (205)
487 PF11690 DUF3287: Protein of u 23.5 4.1E+02 0.009 21.7 6.8 39 49-91 41-81 (109)
488 PRK10884 SH3 domain-containing 23.4 4.6E+02 0.0099 24.4 8.0 38 49-86 92-129 (206)
489 PF04880 NUDE_C: NUDE protein, 23.3 1.3E+02 0.0029 26.7 4.2 16 69-84 8-23 (166)
490 PF02787 CPSase_L_D3: Carbamoy 23.3 4.5E+02 0.0097 22.1 7.3 68 57-132 30-97 (123)
491 KOG0999 Microtubule-associated 23.2 8E+02 0.017 26.4 10.2 34 95-128 150-186 (772)
492 KOG2662 Magnesium transporters 23.1 5.1E+02 0.011 26.7 8.7 58 52-109 178-235 (414)
493 PF12128 DUF3584: Protein of u 22.9 9.4E+02 0.02 29.4 12.7 77 51-135 726-804 (1201)
494 KOG4083 Head-elevated expressi 22.9 2.2E+02 0.0047 25.6 5.3 34 48-81 88-121 (192)
495 PRK03818 putative transporter; 22.8 4.3E+02 0.0093 28.9 9.0 38 284-321 436-473 (552)
496 PF02268 TFIIA_gamma_N: Transc 22.6 80 0.0017 21.6 2.1 29 107-135 16-44 (49)
497 PF12128 DUF3584: Protein of u 22.6 1.3E+03 0.029 28.1 13.9 44 92-135 343-386 (1201)
498 PRK14149 heat shock protein Gr 22.5 6E+02 0.013 23.3 10.3 82 50-135 43-130 (191)
499 PF06103 DUF948: Bacterial pro 22.5 3.7E+02 0.0081 20.8 10.3 17 97-113 71-87 (90)
500 PF05597 Phasin: Poly(hydroxya 22.4 3.1E+02 0.0068 23.4 6.2 21 68-88 109-129 (132)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-36 Score=279.02 Aligned_cols=176 Identities=38% Similarity=0.523 Sum_probs=150.4
Q ss_pred CcchhHHhhhcchhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 2 VAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLR 81 (619)
Q Consensus 2 MkFg~~l~~~~~~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~ 81 (619)
|||||+|++...|||+++|||||.|||+||+..........+. ..+..|.++||+||+||+.||.+++.++.+|++.|+
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~~~~~~~~-~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~ 79 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQTADSSPDS-RDESDFVRLLDAELEKVNGFQLEKESELIIRLKELE 79 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhccccccCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999743222211111 146899999999999999999999999999999999
Q ss_pred HHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCccchHHHHhhcCCCCccchhchh
Q 047440 82 EQHDALLQ-QPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFK 160 (619)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~~~~~~~~~~~~~~~~~~~~~~f~ 160 (619)
.++++-.. +++.+....+++++.++..|+.+|.+|++||+|||+||||||||++|...++.|..++..+||..
T Consensus 80 e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~------ 153 (310)
T KOG1161|consen 80 EKIDALSLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQPFFT------ 153 (310)
T ss_pred HHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhCCCch------
Confidence 99987222 24566788999999999999999999999999999999999999999999999999888889855
Q ss_pred hccHHHHHHHHHHHHHHHhhccCC
Q 047440 161 HVGLGAVVGAISRNLHELQDHQGS 184 (619)
Q Consensus 161 ~~~~~~l~~~i~~~~~~l~~~~~~ 184 (619)
.+.+.++..+|+..+.-+++....
T Consensus 154 ~e~~~~Lv~e~~~l~~~l~~~~~~ 177 (310)
T KOG1161|consen 154 TEQLFRLVYEISILLDLLRPSNRN 177 (310)
T ss_pred hhhHHHHHHHHHHHHHHhcccccc
Confidence 667788999999777777664433
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=2e-32 Score=271.39 Aligned_cols=147 Identities=33% Similarity=0.524 Sum_probs=125.8
Q ss_pred CcchhHHhhhcchhhHHhccCchhhHHHHHHhhhhhhcc-----------------------------------------
Q 047440 2 VAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVG----------------------------------------- 40 (619)
Q Consensus 2 MkFg~~l~~~~~~ew~~~yi~Y~~lKk~i~~~~~~~~~~----------------------------------------- 40 (619)
|||||+|+.+++|||+++||||+.|||+||+++......
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTSPSS 80 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhcccccccccccccccccccccccc
Confidence 999999999999999999999999999999986644321
Q ss_pred -----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------------
Q 047440 41 -----AQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPD----------------------- 92 (619)
Q Consensus 41 -----~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 92 (619)
..+....+.+|+..|+.|++|||.||.+++.++.++++.|++++..+.++..
T Consensus 81 ~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T PF03105_consen 81 SNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYNWNQSSQLSSSSNIFSS 160 (275)
T ss_pred cccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhccccccccC
Confidence 0111135689999999999999999999999999999999999886532200
Q ss_pred -----------------------------------------------------------hhHHHHHHHHHHHHHHHHHHH
Q 047440 93 -----------------------------------------------------------ISQMTELREAYRAAGMDLLKL 113 (619)
Q Consensus 93 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~l 113 (619)
......+++++.++|.+|.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~y~~l~~L 240 (275)
T PF03105_consen 161 SSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLSSSQKSLKKARKQLKKAFIELYRELELL 240 (275)
T ss_pred ccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 113457888999999999999
Q ss_pred HhHHHHHHHHHHHHHHhhhhhcCCccchHHHHhhc
Q 047440 114 LFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRA 148 (619)
Q Consensus 114 ~~~~~lN~~~~~KIlKK~dK~~~~~~~~~~~~~~~ 148 (619)
++|++||+|||+||||||||++++++++.||+.++
T Consensus 241 k~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v~ 275 (275)
T PF03105_consen 241 KSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEVV 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHhhhhccC
Confidence 99999999999999999999999999999998764
No 3
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4e-31 Score=270.90 Aligned_cols=180 Identities=23% Similarity=0.327 Sum_probs=151.2
Q ss_pred CcchhHHhhhcchhhHHhccCchhhHHHHHHhhhhhhccc--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 2 VAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGA--------QDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLL 73 (619)
Q Consensus 2 MkFg~~l~~~~~~ew~~~yi~Y~~lKk~i~~~~~~~~~~~--------~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~ 73 (619)
|||||+|+.+++|||+++||||+.|||.||++....+..+ ++..+.+..||+.||.|++|||+||.+|.+|.
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~~~~~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~ 80 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKPSSEETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEA 80 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCCCcCccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876544321 22234678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------------------C-----hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 047440 74 ASRLARLREQHDALLQQP------------------D-----ISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKK 130 (619)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~------------------~-----~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK 130 (619)
.++-+.|++|++.+.+.+ . .+..+.++.++.|+|..|..|++|+.||.||||||+||
T Consensus 81 ~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KK 160 (617)
T KOG1162|consen 81 REEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKK 160 (617)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998763211 0 23356788899999999999999999999999999999
Q ss_pred hhhhcCCccchHHHHhhcCCCCccchhchhhccHHHHHHHHHHHHHHHhhccCCcccc
Q 047440 131 FDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSI 188 (619)
Q Consensus 131 ~dK~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~i~~~~~~l~~~~~~~~s~ 188 (619)
|||.++.+. ..|++.+.+.+|.+ .+.+.++.+++|+.+.+.=+..++..++
T Consensus 161 yDK~~~~~~-~~~~~~v~~s~f~~------~~~i~~l~~~Ve~~f~~~fan~nr~~~m 211 (617)
T KOG1162|consen 161 YDKITSRDA-KRYVKMVDKSYFTS------SDEITRLMLEVEETFTKHFANGNRRKAM 211 (617)
T ss_pred HHhhcccch-HHHHHHHHHHhccc------HHHHHHHHHHHHHHHHHHHhCCChhHhh
Confidence 999999999 88988777778876 6778999999999977765544444443
No 4
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.6e-29 Score=248.97 Aligned_cols=285 Identities=22% Similarity=0.286 Sum_probs=251.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+..+..++.+.++.|.......+..+.+|++.+|+|+|....|++.|+|.++..+++|+...++||+.||++++..+.++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 44566778888888888889999999999999999999999999999999999999999999999999999999888776
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+++++++++ +||+.++++|++.|+..|. +...++.++++|+++|++++++...+.+++.++|.++|.++.+.+
T Consensus 89 i~~n~l~alA---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~- 164 (394)
T COG2814 89 IVSNLLSALA---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF- 164 (394)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-
Confidence 999999999 9999999999999999998 899999999999999999999999999999999999999999877
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
|||+ +|++.++++++.++..+..+| |+....
T Consensus 165 --GWR~-----~F~~ia~l~ll~~~~~~~~lP--~~~~~~---------------------------------------- 195 (394)
T COG2814 165 --GWRA-----TFLAIAVLALLALLLLWKLLP--PSEISG---------------------------------------- 195 (394)
T ss_pred --hHHH-----HHHHHHHHHHHHHHHHHHhCC--CccCCC----------------------------------------
Confidence 6777 999999999999999999999 221111
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLP 559 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 559 (619)
....+.++..+.+ +|+++...+..++...+.+..++++.+++++..|++...+++.+.++|+++++
T Consensus 196 -------------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~ 262 (394)
T COG2814 196 -------------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFI 262 (394)
T ss_pred -------------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHH
Confidence 1112223333333 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 560 VNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 560 ~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
++.+.| ++.|| +.++.+.....+.++.++.+.+.+
T Consensus 263 Gn~~gG-rl~dr-~~~~~l~~~~~l~a~~~l~l~~~~ 297 (394)
T COG2814 263 GNLLGG-RLADR-GPRRALIAALLLLALALLALTFTG 297 (394)
T ss_pred HHHHHh-hhccc-cchhHHHHHHHHHHHHHHHHHHhc
Confidence 999999 99999 888888888777777777666554
No 5
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.96 E-value=1.6e-27 Score=255.78 Aligned_cols=325 Identities=14% Similarity=0.083 Sum_probs=237.5
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I 324 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i 324 (619)
+|..+..++++.++..++.+++...+|.+.+++|.+..+.+|+.+++.++..++.+++|+++||+|||++++.+.+.. +
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456777888899999999999999999999999999999999999999999999999999999999999998888766 8
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccC-ccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 325 GNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCV-PLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 325 ~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
+.++++++ ++++.++++|+++|+|.+. +.....+.+.+ |+++|++++|++.....+|.++||++++++.+..
T Consensus 84 ~~~~~~~a---~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-- 158 (495)
T PRK14995 84 ASLAAAFS---PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF-- 158 (495)
T ss_pred HHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--
Confidence 99999999 9999999999999999887 66677776665 7799999999999999999999999999998766
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCc----chhhhhcCCCCcccCCCCCCCCcC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVD----NSALEKGLQQPLLITSEEKPEDED 477 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 477 (619)
+||| +|++...+.++..++.++.+|+++....++.+.......... .-.......... ....
T Consensus 159 -gwr~-----~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~--------~~~~ 224 (495)
T PRK14995 159 -YWGS-----VFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFL--------SLWV 224 (495)
T ss_pred -ChHH-----HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCC--------chHH
Confidence 7888 888888777777777777788765322110000000000000 000000000000 0000
Q ss_pred CCCC-------CCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHH
Q 047440 478 GDQE-------YDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFL 550 (619)
Q Consensus 478 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 550 (619)
...- ...-...+.....+..++ ++++ ++.+....+..++...+..+...++|.|++..+|+++.++|+.+
T Consensus 225 ~~~~~~~~~~~l~~f~~~e~~~~~p~~~~-~lf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~ 301 (495)
T PRK14995 225 TSLTLLTGALLLGLFIRTQLAASRPMIDM-RLFT--HRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFM 301 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcCH-HHhC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 0000 000000000001111111 2222 66666666777777777777778889999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 551 ACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 551 ~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
...+++..++..+.| ++.||+|+|+.+..++++.+++++++.
T Consensus 302 ~~~~~~~~~~~~~~g-~l~~r~g~~~~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 302 LPVMVASGFSGPIAG-ILVSRLGLRLVATGGMALSALSFYGLA 343 (495)
T ss_pred HHHHHHHHHHHHHHH-HHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 999999999988888888777765544
No 6
>PRK03545 putative arabinose transporter; Provisional
Probab=99.96 E-value=5.7e-27 Score=244.58 Aligned_cols=277 Identities=16% Similarity=0.187 Sum_probs=216.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 047440 245 YHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF- 323 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~- 323 (619)
.+|..++.+.++.++.........+.+|.+.+++|.++.+.|++.+++.+++.++++++|+++||+|||+++..+.+..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI 85 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3454555555555555555566778899999999999999999999999999999999999999999999998888765
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 324 IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 324 i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
+++++++++ ++++.++++|++.|++.+. +...+++++++|+++|++++|+...+.++|.++||++++.+.+..
T Consensus 86 ~~~~~~~~~---~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~-- 160 (390)
T PRK03545 86 ASHVLSALA---WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL-- 160 (390)
T ss_pred HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh--
Confidence 888889998 9999999999999999887 788899999999999999999999999999999999999987655
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
+|+| +|++.+++.++..++.+..+|+.+++++
T Consensus 161 -gw~~-----~f~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------------------------ 192 (390)
T PRK03545 161 -GWRT-----TFLAIGGGALITLLLLIKLLPLLPSEHS------------------------------------------ 192 (390)
T ss_pred -cHHH-----HHHHHHHHHHHHHHHHHHhCCCCCCCCc------------------------------------------
Confidence 6777 8888888777666666666665432100
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHH
Q 047440 482 YDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVN 561 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 561 (619)
......++.++ ++.++......++..........+.++|+.+..|++..+++.+.+..+++++++.
T Consensus 193 ------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~ 258 (390)
T PRK03545 193 ------------GSLKSLPLLFR--RPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGS 258 (390)
T ss_pred ------------chHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 00012233333 5666655555555555555556677888888789999999999999999999999
Q ss_pred HHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 047440 562 IIVGSYISNMFEDRQILLASEIMVCIGIL 590 (619)
Q Consensus 562 ~~~g~~l~d~~g~r~~l~~~~~~~~i~~~ 590 (619)
++.+ ++.||++++.. ..+..+..++..
T Consensus 259 ~~~g-~l~dr~~~~~~-~~~~~~~~~~~~ 285 (390)
T PRK03545 259 VLFS-RLGNRHPSGFL-LIAIALLLVCLL 285 (390)
T ss_pred HHHH-HHhhccchhHH-HHHHHHHHHHHH
Confidence 9988 99999998765 444444444443
No 7
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.7e-27 Score=231.79 Aligned_cols=308 Identities=12% Similarity=0.108 Sum_probs=248.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440 243 QKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL 322 (619)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~ 322 (619)
+++++..++..+++.....+..-.+....|.+.++.++|.++.|++.|++.+++.++..+.|.++||.+.|..+..++++
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 35666777777778888888888899999999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHh--hhhhc
Q 047440 323 F-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA--GLLQT 397 (619)
Q Consensus 323 ~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~--~~l~~ 397 (619)
+ +.+++++++ ++++.+.+.-++.|+..|. |++...++.|+|+++||+..|+++.+-++|..+.|++. +++..
T Consensus 104 sai~nil~Gfs---~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 104 SAIVNILFGFS---PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHhhh---hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 7 999999999 9999999999999999888 99999999999999999999999999999999999999 77766
Q ss_pred cccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcC
Q 047440 398 NFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDED 477 (619)
Q Consensus 398 ~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (619)
+. +|++ .|++.++++++..++.++..+++|....-. +.++-. .|..
T Consensus 181 ~~---~w~~-----~f~~pgiiaiival~~~~~~rd~Pqs~GLP--------------~ie~~~------------~d~~ 226 (448)
T COG2271 181 HG---GWRA-----AFYFPGIIAIIVALILLFLLRDRPQSEGLP--------------PIEEYR------------GDPL 226 (448)
T ss_pred cc---chhH-----HHHHHHHHHHHHHHHHHHHhCCCccccCCC--------------CHHHhh------------cCch
Confidence 54 5555 899999999999999999999998743320 000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCcchHHHH-Hh--cCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhh
Q 047440 478 GDQEYDGSDETSEESHPPANSIRSAY-RL--LTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLG 554 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 554 (619)
+.. .+.+.+...+.++++ +. .+|.+|.+++++++...+-++...|.|+|+.+..|+|...++...+..=
T Consensus 227 ------e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE 298 (448)
T COG2271 227 ------EIY--EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFE 298 (448)
T ss_pred ------hhh--hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 000 000111112233332 22 2888999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhcc--chHHHHHH-HHHHHHHHHHhhcccc
Q 047440 555 LTVLPVNIIVGSYISNMF--EDRQILLA-SEIMVCIGILFSFHVF 596 (619)
Q Consensus 555 ~~~~~~~~~~g~~l~d~~--g~r~~l~~-~~~~~~i~~~~~~~~~ 596 (619)
.+++++.++.| |++||+ |||....+ .+++..++++.+...+
T Consensus 299 ~agl~G~Ll~G-wlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~ 342 (448)
T COG2271 299 VAGLPGTLLAG-WLSDKLFKGRRGPMALIFMLLITASLVLYWLAP 342 (448)
T ss_pred HHhhHHHHHHH-HHHHHhcccccchHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999 999996 56655443 4444555555444444
No 8
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.96 E-value=3.9e-27 Score=246.93 Aligned_cols=313 Identities=15% Similarity=0.145 Sum_probs=230.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+|+.+.++++..++..++........|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++..++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 44677777788888888889999999999999999999999999999999999999999999999999999998888765
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc--
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN-- 398 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~-- 398 (619)
++.++++++ ++++.++++|++.|++.+. +....+++|++|+++|++++|++..+.++|.++||++++++...
T Consensus 84 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 84 GIASTATMFA---TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHHHHh---cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888898 9999999999999999988 77788999999999999999999999999999999999988532
Q ss_pred -ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcC
Q 047440 399 -FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDED 477 (619)
Q Consensus 399 -~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (619)
.+.++||| .|++.++..++..++.++++||+|+..+. ...++ .+...+..... ..+
T Consensus 161 ~~~~~gwr~-----~f~~~~~~~l~~~~~~~~~~~~~p~~~~~-l~~~~-------~~~~~~~~~~~--------~~~-- 217 (412)
T TIGR02332 161 LMALKGWQW-----LFLLEGFPSVILGVMTWFWLDDSPDKAKW-LDEED-------KKALKEMIDND--------QLT-- 217 (412)
T ss_pred CCCccchhH-----HHHHHHHHHHHHHHHHhhccCCCcccCCC-CCHHH-------HHHHHHHHHhc--------ccc--
Confidence 12237777 88888888777777777888998853210 00000 00000000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhc-ccccchhHHHHHHHhhhh
Q 047440 478 GDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYY-FGWSTGAVAIFLACLGLT 556 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~ 556 (619)
.++.+... ..............+++.++...+.+++.......+.+++|.|+.+. .|++..+++.+.....++
T Consensus 218 ----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~ 291 (412)
T TIGR02332 218 ----LEQPEGAF--AHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFC 291 (412)
T ss_pred ----cccccccc--ccccccHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHH
Confidence 00000000 00000001112223366677777777777778888889999999873 467888889999999999
Q ss_pred HHHHHHHHHHhhhhccchHHH-HHHHHHHHHHHH
Q 047440 557 VLPVNIIVGSYISNMFEDRQI-LLASEIMVCIGI 589 (619)
Q Consensus 557 ~~~~~~~~g~~l~d~~g~r~~-l~~~~~~~~i~~ 589 (619)
++++.++.+ +++||+++|+. +....++.++++
T Consensus 292 ~~~g~l~~g-~l~dr~~~r~~~~~~~~~~~~~~~ 324 (412)
T TIGR02332 292 TIFGMIWWS-RHSDRLKERKHHTALPYLFAAAGW 324 (412)
T ss_pred HHHHHHHHH-HHhcccCccHHHHHHHHHHHHHHH
Confidence 999999888 99999987764 333444444444
No 9
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.95 E-value=5.5e-26 Score=236.77 Aligned_cols=268 Identities=15% Similarity=0.184 Sum_probs=205.2
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+..|+.+..+.++.++.........+.+|.+.+++|.++++.|++.+++.++..+++++.|+++||+|||++++.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 33566666666665555555556677889999999999999999999999999999999999999999999998888765
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.+++.++ ++++.++++|++.|++.+. +...++++|++|+++|++++++...+.++|.++||++++++.+.+
T Consensus 96 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~- 171 (394)
T PRK10213 96 TLSCLLVSFA---NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI- 171 (394)
T ss_pred HHHHHHHHHH---ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 888888888 9999999999999999887 888999999999999999999999999999999999999997765
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
+|+| .|++.+++.++..+.....+||++.+...
T Consensus 172 --gw~~-----~f~~~~~l~~~~~l~~~~~~p~~~~~~~~---------------------------------------- 204 (394)
T PRK10213 172 --GWRN-----VFNAAAVMGVLCIFWIIKSLPSLPGEPSH---------------------------------------- 204 (394)
T ss_pred --CHHH-----HHHHHHHHHHHHHHHHHHHCCCCCccccc----------------------------------------
Confidence 6777 78777766655554444445654321000
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPV 560 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 560 (619)
........++ +|+++...+..++..........++++++.+.+|++....+..+...+++++++
T Consensus 205 --------------~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig 268 (394)
T PRK10213 205 --------------QKQNTFRLLQ--RPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVG 268 (394)
T ss_pred --------------chhHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 0011222332 666666555555555555555556544444556999999999999999999999
Q ss_pred HHHHHHhhhhccchHHHHH
Q 047440 561 NIIVGSYISNMFEDRQILL 579 (619)
Q Consensus 561 ~~~~g~~l~d~~g~r~~l~ 579 (619)
..+.+ ++.||.+++..+.
T Consensus 269 ~~~~~-~l~~r~~~~~l~~ 286 (394)
T PRK10213 269 TSLSS-FILKRSVKLALAG 286 (394)
T ss_pred HHHHH-HHHhccchhHHHH
Confidence 98888 9999965444333
No 10
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.95 E-value=4.4e-26 Score=243.31 Aligned_cols=302 Identities=13% Similarity=0.062 Sum_probs=217.4
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I 324 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i 324 (619)
.+..+.+.+++.++..++.....+..|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++..++++. +
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 344455566666677777888889999999999999999999999999999999999999999999999987766543 4
Q ss_pred HHHHHHHh--hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 325 GNVMYALA--YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 325 ~~~l~~~~--~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+.++.++. ...++++.++++|++.|++.+. +...+++++++|+++||+++|++..+.++|.++|++++.++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 44443331 1118999999999999999776 8888999999999999999999999999999999999877654321
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
..+|++ .|.+.+++.++..++.+++.+++|+....... + + ...
T Consensus 187 ~~~~~~-----~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-----------~-------------------~--~~~ 229 (467)
T PRK09556 187 DGHVIG-----MFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-----------E-------------------E--IFG 229 (467)
T ss_pred cCcchh-----HHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-----------h-------------------h--ccc
Confidence 113444 67777777666666666677776653221000 0 0 000
Q ss_pred CCCCCCCCCCCCCCCCcchHHH-HH--hcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhH
Q 047440 481 EYDGSDETSEESHPPANSIRSA-YR--LLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTV 557 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 557 (619)
+....+.. ..... ..+..+. .+ +.++.++...+..++......+...+.|.|+.+.+|++..++++..+...++.
T Consensus 230 ~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 230 EPISEEDK-ETEST-DMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred Cccchhhh-ccccc-cCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 00000000 00000 0111111 11 12677888888888878777788889999999888999999999998889999
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCI 587 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i 587 (619)
+++.++.| +++||+++|+.+..+..+.++
T Consensus 308 ~ig~~~~G-~lsDr~g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 308 LVGSLLWG-WLSDLANGRRALVACIALALI 336 (467)
T ss_pred HHHHHHHH-HHHHHHCCCchHHHHHHHHHH
Confidence 99999988 999999998876655443333
No 11
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.95 E-value=1.1e-25 Score=242.39 Aligned_cols=323 Identities=15% Similarity=0.178 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
.+..++++.++..++..+..+.+|.+.+++|.+..+.|++.+++.++.+++.+++|+++||+|||++++.+.+.. ++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 345566777888888999999999999999999999999999999999999999999999999999998887765 8888
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccccee
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLT 405 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~ 405 (619)
+++++ ++++.++++|++.|++.+. +...+++.|++|+++|+++++++..+..+|..+||.+++++.+.+ +|+
T Consensus 83 ~~~~~---~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~w~ 156 (485)
T TIGR00711 83 LCGVA---PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY---HWR 156 (485)
T ss_pred HHhCc---CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc---Cce
Confidence 88888 9999999999999999887 888999999999999999999999999999999999999997765 788
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcch----hhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNS----ALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
| .|++.+.+.++..++.++.+|++++....+.+............ ....+....+. .+......
T Consensus 157 ~-----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 224 (485)
T TIGR00711 157 W-----IFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWF-------DSNEILIL 224 (485)
T ss_pred e-----hhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCC-------CchHHHHH
Confidence 7 78887777776666666777765432111000000000000000 00000000000 00000000
Q ss_pred -C-C-----CCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhh
Q 047440 482 -Y-D-----GSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLG 554 (619)
Q Consensus 482 -~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 554 (619)
. . .....+....++..+. ..++ ++.++..++..++..+...+...++|.|+++.+|+++.++|+.....+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~ 301 (485)
T TIGR00711 225 SITGLVAIIAFVVWELTDDNPLVDL-RLFK--YRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVG 301 (485)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCH-HHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 0 0000000000111111 2222 677777777777777777888888999999989999999999999999
Q ss_pred hhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 555 LTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 555 ~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
++.+++.++.+ ++.||+|+|+.+.++.++.+++++++.
T Consensus 302 ~~~~~~~~~~g-~l~~r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 302 LAPMLSSPIAG-RMGDKIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred HHHHHHHHHHH-HHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999988 999999999998888888888777655
No 12
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.2e-27 Score=222.32 Aligned_cols=169 Identities=27% Similarity=0.369 Sum_probs=139.8
Q ss_pred CcchhHHhhhcchhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 2 VAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLR 81 (619)
Q Consensus 2 MkFg~~l~~~~~~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~ 81 (619)
|+||++|+++.+|+|+++||||..|||.||+-. ...++.+.+ +++|.+.||.||+||..|...|+.|+.+|++.|+
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~-~~~~w~e~d---EsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~le 76 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESE-EEGSWSESD---ESDFVEELDKELEKVYGFQLSKYSEVMERLRTLE 76 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhcc-ccCCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999832 233355555 4899999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCccchHHHHhhcCCCCccchhchhh
Q 047440 82 EQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKH 161 (619)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 161 (619)
++.++..+..+.+... +.+.|...+.++|.+|.+||+|||.||+|||||++|..+++.|-.+.-..||. .
T Consensus 77 eq~~~~i~~~ds~~~~---~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvrLk~~p~~-------s 146 (509)
T COG5036 77 EQTDEAIQELDSDNFP---KILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVRLKAKPFF-------S 146 (509)
T ss_pred hccHHHhhcccCCcch---hHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHHhccCCcc-------h
Confidence 9988655544433322 24444445899999999999999999999999999999999887654445764 6
Q ss_pred ccHHHHHHHHHHHHHHHhhccCC
Q 047440 162 VGLGAVVGAISRNLHELQDHQGS 184 (619)
Q Consensus 162 ~~~~~l~~~i~~~~~~l~~~~~~ 184 (619)
+.++.|..+|+..+.-++.+-..
T Consensus 147 e~yd~Ll~kis~LY~~lR~~~~~ 169 (509)
T COG5036 147 EQYDPLLYKISSLYNILRSSLSP 169 (509)
T ss_pred hhhcHHHHHHHHHHHHHHhcCCc
Confidence 77889999999998888875553
No 13
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.95 E-value=4.7e-26 Score=248.95 Aligned_cols=187 Identities=10% Similarity=0.104 Sum_probs=157.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+|..++++.++.+..+++...+.+++|.+..++|++..+.|++.+++.+|.+++++++|+++||+|||+++++++++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45666667777777777777888888999999999999999999999999999999999999999999999998887655
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.++++++ ++++.++++|++.|++.|+ ++..++++|++|++.|+.+++++.+++.+|.++++.++.++...++
T Consensus 243 ~i~~ll~afa---~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 243 GFFAFFSSFV---QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888 8999999999999999887 8999999999999999999999999999999999998877754331
Q ss_pred ----------ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhh
Q 047440 401 ----------IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIE 439 (619)
Q Consensus 401 ----------~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~ 439 (619)
..+||| .+++.++. .+..++.++++||+|+...
T Consensus 320 ~~~~~g~~~~~~gWR~-----l~~i~~lp-~ll~ll~~~~lPESPrwL~ 362 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRV-----FVIVCAFP-CVFAIGALTFMPESPRFFL 362 (742)
T ss_pred chhccccccccccHHH-----HHHHHHHH-HHHHHHHHHHcCCCHHHHH
Confidence 123444 66665554 4445566678899998643
No 14
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.95 E-value=2.2e-25 Score=235.55 Aligned_cols=281 Identities=13% Similarity=0.127 Sum_probs=212.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 047440 245 YHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF- 323 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~- 323 (619)
+++..+...+++.++..++.....+.+|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++.++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3444555556666666666777788899999999999999999999999999999999999999999999998888765
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 324 IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 324 i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
++.++++++ ++++.+++.|++.|++.|. +...+++++++|+++|++++|+.+.+.++|.+++|++++++.+.+
T Consensus 100 ~~~~~~~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-- 174 (434)
T PRK11663 100 IINILFGFS---SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY-- 174 (434)
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 888888888 9999999999999998876 788899999999999999999999999999999999999987655
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
+|+| +|++.+++.++..++.++.+||+|........ .+..++..
T Consensus 175 -gw~~-----~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-----------------------------~~~~~~~~- 218 (434)
T PRK11663 175 -GWRY-----GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-----------------------------GEWRHDAL- 218 (434)
T ss_pred -cHHH-----HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-----------------------------cccccccc-
Confidence 6777 78887777666656666677887643211000 00000000
Q ss_pred CCCCCCCCCCCCCCCcchHHHHH---hcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHH
Q 047440 482 YDGSDETSEESHPPANSIRSAYR---LLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVL 558 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 558 (619)
+...+ ..+...+.++.++ ..++.++...+..++..+....+..++|.|+.+.+|++..+++...+..+++++
T Consensus 219 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ 293 (434)
T PRK11663 219 --ELAQQ---QEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGF 293 (434)
T ss_pred --ccchh---ccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 00000 0000111222211 125666666666666666667777889999987789999999999999999999
Q ss_pred HHHHHHHHhhhhcc
Q 047440 559 PVNIIVGSYISNMF 572 (619)
Q Consensus 559 ~~~~~~g~~l~d~~ 572 (619)
++.++.| +++||+
T Consensus 294 ~g~~~~g-~l~dr~ 306 (434)
T PRK11663 294 IGALVAG-WGSDKL 306 (434)
T ss_pred HHHHHHh-hhHHHh
Confidence 9999999 999998
No 15
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.95 E-value=2e-25 Score=232.69 Aligned_cols=281 Identities=14% Similarity=0.152 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
+..+.+..++...+.....|.+|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||+++..+.+.. ++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 7 ALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 34444445566677888999999999999999999999999999999999999999999999999998887665 78888
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
+.++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++.+....+|.++||.+++++.+.. +|++
T Consensus 87 ~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~ 160 (385)
T TIGR00710 87 LALS---NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL---SWHA 160 (385)
T ss_pred HHHH---ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHH
Confidence 8888 9999999999999999887 888899999999999999999999999999999999999987654 5666
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCC
Q 047440 407 NQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSD 486 (619)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (619)
++++.+++.++..++.++..||+++...+
T Consensus 161 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 189 (385)
T TIGR00710 161 -----IFAFLSLAGILLSALIFFILPETLPYEAR---------------------------------------------- 189 (385)
T ss_pred -----HHHHHHHHHHHHHHHHHHhCCCCCCCccc----------------------------------------------
Confidence 78877777676666666666765431110
Q ss_pred CCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHH
Q 047440 487 ETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGS 566 (619)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 566 (619)
.........++..++ +++++...+...+..........+.|.++.+.+|+++.+.+.+....+++.+++.++.+
T Consensus 190 ---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g- 263 (385)
T TIGR00710 190 ---IQISTYFETFLLLLK--SKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNG- 263 (385)
T ss_pred ---CCHHHHHHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000000112223332 56666666666666666667777788888888899999999999999999999999988
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 567 YISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 567 ~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
++.||+++|+.+..+.++.+++.+++.
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 264 RFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888777666655443
No 16
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.94 E-value=2.2e-25 Score=231.79 Aligned_cols=276 Identities=19% Similarity=0.267 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
+....+..++..+......+.+|.+.+++|.+..+.|++.+++.+++.++++++|+++||+|||+++..+.+.. ++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 45556677777778888899999999999999999999999999999999999999999999999998887765 88888
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
++++ ++++.+++.|++.|++.+. +...+++.+++|+++|+++++....+..+|..+||++++++.+.. +|||
T Consensus 85 ~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---gwr~ 158 (382)
T PRK10091 85 FTLS---SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF---SWRY 158 (382)
T ss_pred HHHh---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc---cHHH
Confidence 8898 9999999999999999887 677788999999999999999999999999999999999987654 6777
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCC
Q 047440 407 NQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSD 486 (619)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (619)
+|++.+++.++..+..++.+||.+++.+.
T Consensus 159 -----~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------------------------------------- 187 (382)
T PRK10091 159 -----TFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------------------------------------- 187 (382)
T ss_pred -----HHHHHHHHHHHHHHHHHHhCCCCCccccc----------------------------------------------
Confidence 78888877666666666667775321000
Q ss_pred CCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHH
Q 047440 487 ETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGS 566 (619)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 566 (619)
..+..++ .. .+++.+......++...+.....++.++++.+.+|+++.+.+++.++.+++.+++.++.+
T Consensus 188 -------~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g- 256 (382)
T PRK10091 188 -------GLREQFH-FL--RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSG- 256 (382)
T ss_pred -------CHHHHHH-Hh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHh-
Confidence 0000111 11 144455444444444444444555667777777799999999999999999999999988
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 567 YISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 567 ~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
++.||+++++.+.++.++.+++++++.
T Consensus 257 ~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 257 RLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred eeccccCchhHHHHHHHHHHHHHHHHH
Confidence 999999999998888877777765443
No 17
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.94 E-value=4.2e-25 Score=232.00 Aligned_cols=292 Identities=14% Similarity=0.111 Sum_probs=225.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+++|..+.+.+...++..++.....+..|.+.+++|.++.+.|++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 46777888888888888989888999999999999999999999999999999999999999999999999998877655
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.+++.++ ++++.+++.|++.|++.+. +...+++.|++|+++|++++++...+..+|..++|.+++.+....
T Consensus 91 ~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 166 (406)
T PRK11551 91 GLFSLATAQA---WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA- 166 (406)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-
Confidence 777788888 9999999999999999887 788899999999999999999999999999999999998876544
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
+|++ +|++.+++.++..++..+++||+++....+.
T Consensus 167 --~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------------------- 201 (406)
T PRK11551 167 --AWRH-----IFYVGGVGPLLLVPLLMRWLPESRAFAQAAG-------------------------------------- 201 (406)
T ss_pred --CHHH-----HHHHHHHHHHHHHHHHHHhCCCChhHHhccC--------------------------------------
Confidence 5666 7887777666666666677888765332100
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLP 559 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 559 (619)
. ...........++.. .+..+......++..........+.|.|+.+ .|++..+.+...+..+++.++
T Consensus 202 ---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~ 270 (406)
T PRK11551 202 ---A-------GKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGAL 270 (406)
T ss_pred ---c-------chhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHH
Confidence 0 000000111111110 1223333334444444555666678888877 499999999999999999999
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 560 VNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 560 ~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+.++.+ ++.||+|+++.+..+.+..+++++++...+
T Consensus 271 ~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (406)
T PRK11551 271 GSLLIG-ALMDRLRPRRVVLLIYAGILASLAALAAAP 306 (406)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999988 999999999988877666666655544433
No 18
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.94 E-value=5.4e-25 Score=227.81 Aligned_cols=294 Identities=17% Similarity=0.113 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHhhhHhhccChHH-HHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADD-YSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
+..+++.++.........+.+|. +.+++|+++.+.|++.+++.++++++++++|+++||+|||++++.+.+.. ++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34556666667777888899996 77889999999999999999999999999999999999999988877765 88888
Q ss_pred HHHhhccC-cHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc-------
Q 047440 329 YALAYDFS-SIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF------- 399 (619)
Q Consensus 329 ~~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~------- 399 (619)
++++ + +++.++++|++.|++.+. +...+++++++|+++|++++++...+..+|..+|+.+++.+....
T Consensus 84 ~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 160 (366)
T TIGR00886 84 AGLA---VQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP 160 (366)
T ss_pred HHHH---hhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888 8 999999999999999776 677889999999999999999999888888888888877664321
Q ss_pred cccceeccccchhH-HHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCC
Q 047440 400 KIYKLTFNQNTLPG-WIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDG 478 (619)
Q Consensus 400 ~~~~w~w~~~~~~~-~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (619)
...+|+| +| +..+++..+..++.+...++.|+...+.. + .+...
T Consensus 161 ~~~~w~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-----------------~~~~~ 205 (366)
T TIGR00886 161 AHLAWGW-----AFVIVPAGILLLPALLIFFVGADTPPGKPATG-------------K-----------------LSFKG 205 (366)
T ss_pred ccccccc-----hhHHHHHHHHHHHHHHHHHhcccCCcccccch-------------h-----------------ccccc
Confidence 1126777 56 33344444455555556666654221100 0 00000
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHH
Q 047440 479 DQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVL 558 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 558 (619)
. .. . ..........+.++ +++++...+..++.......+..+.|.|+.+.+|+++.+++.+..+..++++
T Consensus 206 ~----~~---~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 275 (366)
T TIGR00886 206 A----RW---S-VGTGALGDQLKVFR--DRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGS 275 (366)
T ss_pred c----cc---c-ccchhHHHHHHHHh--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 0 00 0 00000012222333 6677777776666666677778888999999899999999998888888888
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 559 PVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 559 ~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
++.++.+ ++.||+|+|+.+..+.++.+++.+++.
T Consensus 276 ~~~~~~g-~l~~r~g~~~~~~~~~~~~~~~~~~~~ 309 (366)
T TIGR00886 276 LARPLGG-AISDRLGGARKLLMSFLGVAMGAFLVV 309 (366)
T ss_pred HHhhccc-hHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 8888888 999999998887777666665554443
No 19
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.94 E-value=6.3e-25 Score=235.63 Aligned_cols=291 Identities=13% Similarity=0.138 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccch-hhH-----HHhhHHHHHHHHhhhhhhhccccCchhHHHHHH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATV-CGI-----VIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSI 320 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~-----~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~ 320 (619)
++.+....++.++..++..++....|.+.++++.+... .++ +.++..++..++++++|+++||+|||+++..++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566677788899999999999999898888643322 122 257788999999999999999999999998888
Q ss_pred HHH-HHHHHHHHhhccCcHHH--------HHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHH
Q 047440 321 VLF-IGNVMYALAYDFSSIAV--------LLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGP 389 (619)
Q Consensus 321 ~~~-i~~~l~~~~~~~~~~~~--------l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 389 (619)
++. ++.++++++ ++++. ++++|+++|++.|. +...++++|++|+++||++.++...+..+|.++|+
T Consensus 95 ~l~~i~~~~~a~~---~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 95 VIMSISTFCIGLI---PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 766 999999999 88764 88999999999888 88899999999999999999999988888888888
Q ss_pred HHhhhhhcc-----ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCC
Q 047440 390 ALAGLLQTN-----FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQP 464 (619)
Q Consensus 390 ~i~~~l~~~-----~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (619)
.++..+... ...++||| +|++.+++.++ .++....+||+|+....+.... .
T Consensus 172 ~~~~~~~~~~~~~~~~~~gWR~-----~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~------------------~ 227 (490)
T PRK10642 172 GVVVLISTIVGEANFLDWGWRI-----PFFIALPLGII-GLYLRHALEETPAFQQHVDKLE------------------Q 227 (490)
T ss_pred HHHHHHHHhcCHHHhcCccHHH-----HHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhh------------------h
Confidence 776555321 12246777 88887655443 3444567899876432200000 0
Q ss_pred cccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccch
Q 047440 465 LLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTG 544 (619)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 544 (619)
.+. + . .......+++++++-..+.+...+...++..+.++++..++|.|+.+.+|++..
T Consensus 228 ---------~~~-------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~ 286 (490)
T PRK10642 228 ---------GDR-------E--G---LQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSED 286 (490)
T ss_pred ---------hcc-------c--c---ccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 000 0 0 000112234444431112233333334445566777788899999887899888
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 047440 545 AVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVC 586 (619)
Q Consensus 545 ~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~ 586 (619)
..++......++.+++.++.| +++||+|||+.+..+.++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~ 327 (490)
T PRK10642 287 HGVLIIIAIMIGMLFVQPVMG-LLSDRFGRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHH
Confidence 888777777777888888888 99999999998877765433
No 20
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.94 E-value=9.8e-25 Score=230.64 Aligned_cols=279 Identities=13% Similarity=0.133 Sum_probs=203.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhC---CccchhhHH---HhhHHHHHHHHhhhhhhhccccCchhHHHH
Q 047440 245 YHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLG---AAATVCGIV---IGAMAIAQVFSSVYFSAWSNRSYFKPLVFS 318 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~---~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~ 318 (619)
.+++.+....++.++..++...+....|.+.++++ .+..+.+.+ .++..++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34455666667788888999998888898988884 455544443 444455555999999999999999999988
Q ss_pred HHHHH-HHHHHHHHhhccCcH--------HHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHH
Q 047440 319 SIVLF-IGNVMYALAYDFSSI--------AVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMAC 387 (619)
Q Consensus 319 ~~~~~-i~~~l~~~~~~~~~~--------~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 387 (619)
++++. +++++++++ +++ ..++++|+++|++.|. +...++++|++|+++|+++.++...+..+|.++
T Consensus 99 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 99 SVCMMCFGSLVIACL---PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 88765 888888888 655 3689999999999887 889999999999999999999998888888888
Q ss_pred HHHHhhhhhcc-----ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCC
Q 047440 388 GPALAGLLQTN-----FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQ 462 (619)
Q Consensus 388 g~~i~~~l~~~-----~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (619)
+++++..+... ...++||+ +|++.++..++. ++....+||+++.+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~gWr~-----~F~i~~~~~ll~-~~~~~~~~e~~~~~~~---------------------- 227 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREWGWRI-----PFALGAVLAVVA-LWLRRQLDETSQQETR---------------------- 227 (432)
T ss_pred HHHHHHHHHHhCCHHHHhccchHH-----HHHHHHHHHHHH-HHHHhcCCCCchHHHh----------------------
Confidence 88776655321 11246777 888777665543 3333445665442111
Q ss_pred CCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHH-HHHHHHHHhhchhhhhhhcccc
Q 047440 463 QPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFM-LKYVMEILLSESSVVTTYYFGW 541 (619)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 541 (619)
..+...+++++++ +++.+...+..++ .....+.+..++|.|+.+.+|+
T Consensus 228 -----------------------------~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~ 276 (432)
T PRK10406 228 -----------------------------ALKEAGSLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM 276 (432)
T ss_pred -----------------------------hhcccccHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0001123555554 5555555444443 3566777888899999888899
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 047440 542 STGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVC 586 (619)
Q Consensus 542 s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~ 586 (619)
+..+.+...++..++..+++.+.| +++||++||+.+.++.++.+
T Consensus 277 s~~~~~~~~~i~~~~~~i~~~~~G-~l~Dr~grr~~~~~~~~~~~ 320 (432)
T PRK10406 277 HANVASGIMTAALFVFMLIQPLIG-ALSDKIGRRTSMLCFGSLAA 320 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCchHHHHHHHHHHH
Confidence 988888888888888888888887 99999999988776655443
No 21
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.94 E-value=7.3e-25 Score=230.07 Aligned_cols=286 Identities=14% Similarity=0.101 Sum_probs=221.7
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I 324 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i 324 (619)
.+....++.+..++..++...+.|.+|.+.+++|.+..+.++..+++.+++.+++++.|+++||+|||++++.+.+.. +
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 344455555666666778888889999999999999999999999999999999999999999999999988877655 7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 325 GNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 325 ~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
+.+++.++ ++++.+++.|++.|++.+. +...+++.|.+|+++|++++++...+..+|..+||.+++++.+..
T Consensus 91 ~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~--- 164 (406)
T PRK15402 91 TCLAILLA---QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL--- 164 (406)
T ss_pred HHHHHHHH---ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 88888888 8999999999999999887 778899999999999999999998888899999999999987654
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCC
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (619)
+|+| ++++.+++.++..+..++..||+++...+
T Consensus 165 ~w~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 197 (406)
T PRK15402 165 PWRG-----MFVLFAALAALSFFGLWRAMPETAGRVGE------------------------------------------ 197 (406)
T ss_pred CccH-----HHHHHHHHHHHHHHHHHHhCCCCCccccc------------------------------------------
Confidence 6777 78887777766666666666765431111
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHH
Q 047440 483 DGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNI 562 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 562 (619)
+ ....+....++..++ +++++...+..++.......+....|.++.+.+|+++.+.+.......++.+++.+
T Consensus 198 ----~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~ 269 (406)
T PRK15402 198 ----K--LSLKELGRDYKLVLK--NRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNL 269 (406)
T ss_pred ----c--ccHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 000001112223333 66666666666666555556666678888887899999999887777777888888
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 563 IVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 563 ~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
+.+ ++.||+++|+.+..+.++.+++.+++.
T Consensus 270 ~~g-~l~~r~~~~~~~~~~~~~~~~g~~~~~ 299 (406)
T PRK15402 270 TLA-RLTSRRPLRSLIRMGLWPMVAGLLLAA 299 (406)
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 888 999999999998888877777666544
No 22
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.94 E-value=1.5e-25 Score=230.56 Aligned_cols=287 Identities=22% Similarity=0.351 Sum_probs=218.2
Q ss_pred HHHHHHHHhhhHhhccChH-HHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH
Q 047440 254 LANTFLYMVNTYIIVPTAD-DYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL 331 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~ 331 (619)
+++.++..++.....+.+| .+.+++|.+..++|++.+++.++..++++++|+++||+|||++++.+.++. ++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 4566677778888888888 777889999999999999999999999999999999999999888888766 66566666
Q ss_pred hhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecccc
Q 047440 332 AYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQN 409 (619)
Q Consensus 332 ~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~ 409 (619)
+ ++++.++++|++.|++.+. +...+++.|++|+++|++++++...+..+|.++||.+++++.+.. +|+|
T Consensus 82 ~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---~~~~--- 152 (352)
T PF07690_consen 82 A---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF---GWRW--- 152 (352)
T ss_dssp H---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC---HHCC---
T ss_pred h---hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc---cccc---
Confidence 6 7888999999999999877 899999999999999999999999999999999999999998655 6777
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCC
Q 047440 410 TLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETS 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (619)
+|++.+++.++..++..++++++++...... + . +..
T Consensus 153 --~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~--------------------------------~---------~-~~~ 188 (352)
T PF07690_consen 153 --AFLISAILSLIAAILFILFLPEPPPPRERES--------------------------------P---------K-ESE 188 (352)
T ss_dssp --HHHHHHHHHHHHHHHHHCCC---STTTT--S--------------------------------S---------T-TTT
T ss_pred --ccccccchhhhhhhhHhhhhhhccccccccc--------------------------------c---------c-ccc
Confidence 8888888887777765566666555333200 0 0 000
Q ss_pred CCCCCCCc-chHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhccccc-chhHHHHHHHhhhhHHHHHHHHHHh
Q 047440 490 EESHPPAN-SIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWS-TGAVAIFLACLGLTVLPVNIIVGSY 567 (619)
Q Consensus 490 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~~~~~g~~ 567 (619)
....++.. .++.+++ ++.++......++..+.......+.|.|+.+.+|++ ..+.+...++.+++++++..+.+ +
T Consensus 189 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 265 (352)
T PF07690_consen 189 SKKPKPLKPGFKSLFK--NPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAG-R 265 (352)
T ss_dssp --HHHCCCH-CTHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccc--cchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 00000111 1333443 444443455555555566778888899888888999 78999999999999999988988 9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 568 ISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 568 l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+.||+++++..........++.+.+....
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (352)
T PF07690_consen 266 LSDRFGRRRRLLIAILLLILGALGLLLLP 294 (352)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877777766666666555444
No 23
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.94 E-value=1.1e-24 Score=227.67 Aligned_cols=283 Identities=18% Similarity=0.216 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
+.......+....+.....+.+|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||++++.+.+.. ++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 34445556666677777789999999999999999999999999999999999999999999999988877655 78888
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
+.++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++.+....+|.+++|.+++.+.+.. +|+|
T Consensus 85 ~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~---g~~~ 158 (392)
T PRK10473 85 CSLA---ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF---PWQS 158 (392)
T ss_pred HHHh---CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---ChHH
Confidence 8888 8999999999999999887 788899999999999999999999999999999999999886554 5666
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCC
Q 047440 407 NQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSD 486 (619)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (619)
.+++.+++.++..++.++.+||+++....
T Consensus 159 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------------------- 187 (392)
T PRK10473 159 -----LFYTMAAMGILVLLLSLFILKETRPARAP---------------------------------------------- 187 (392)
T ss_pred -----HHHHHHHHHHHHHHHHHHHcCCCCCcccC----------------------------------------------
Confidence 78888777777777766777776432110
Q ss_pred CCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHH
Q 047440 487 ETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGS 566 (619)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 566 (619)
.........++.++ +++++...+..++.......+..+.|.+..+.+|++..+.+.+.+..+++++++.++.+
T Consensus 188 ----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~- 260 (392)
T PRK10473 188 ----AASSKPRENSESLL--NRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTP- 260 (392)
T ss_pred ----CccchHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 00000011122222 55555545444444444445556677788777899999999999999999999998888
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 567 YISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 567 ~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
++.||+|+|+.+..+.++.+++.+++...+
T Consensus 261 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 261 FALGIFKPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887777766655443
No 24
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.5e-25 Score=215.28 Aligned_cols=292 Identities=16% Similarity=0.124 Sum_probs=243.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+.+.+++..++..+..+..++..+..+.+..++|+|+.|.+++.++..+...+..++.|.+.||+|.|++...+.+..
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 45667778888888888888888889888899999999999999999999999999999999999999999888777765
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
+-++..+++...+++|.+++++++.|+++|. ++..++++.++|++++|.++|+.. ..++|..+..+++.++....+.
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~ 168 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF 168 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence 8888888885557778999999999999999 999999999999999999999999 8889988888888887655520
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
..|+. ...+..+..++..+..++.+.+.|..+..
T Consensus 169 ~~w~~-----~~~i~~~~l~v~~v~~~~~~~d~p~~r~~----------------------------------------- 202 (417)
T COG2223 169 LAWRN-----VAGIYVVALAIAAVLAWLGMNDVPEHRAS----------------------------------------- 202 (417)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHhCCChhhhcc-----------------------------------------
Confidence 01444 66677777777788888888888764222
Q ss_pred CCCCCCCCCCCCCCC-cchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHH
Q 047440 482 YDGSDETSEESHPPA-NSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPV 560 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 560 (619)
..... ..++..++ ++..|.+.+.++....++.++..++|.|+++.||.++.++|.......+.+.+.
T Consensus 203 ----------~~~~~~~~~~~v~~--~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~ 270 (417)
T COG2223 203 ----------VKPQLPAQLKAVFS--NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALA 270 (417)
T ss_pred ----------ccccchhHHHHHhc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 00011 23444444 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHHHHhhccc
Q 047440 561 NIIVGSYISNMFEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 561 ~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
+.+.| +++||+|.++.+.+.++.++++..++...
T Consensus 271 Rp~GG-~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~ 304 (417)
T COG2223 271 RPLGG-WLSDRIGGRRVTLAVFVGMALAAALLSLF 304 (417)
T ss_pred Hhccc-hhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence 99978 99999999999998888888777665543
No 25
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.94 E-value=4.8e-25 Score=226.39 Aligned_cols=248 Identities=11% Similarity=-0.041 Sum_probs=192.2
Q ss_pred HHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcH
Q 047440 260 YMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSI 338 (619)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~ 338 (619)
+......+.+.+|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||++++.++++. .+.+..... +++
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~~~ 79 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP---FNY 79 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh---ccH
Confidence 3456677889999999999999999999999999999999999999999999999877666655 333333444 689
Q ss_pred HHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHH
Q 047440 339 AVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMA 417 (619)
Q Consensus 339 ~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~ 417 (619)
+.++++|++.|++.+. +.....++|++|+++|++++++...+..+|.++++++++++.+.+ +||| .|++.+
T Consensus 80 ~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~---gWr~-----~f~~~~ 151 (368)
T TIGR00903 80 EWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG---GLQL-----LIIPIA 151 (368)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH-----HHHHHH
Confidence 9999999999999888 666677799999999999999999999999999999999997654 7777 888888
Q ss_pred HHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCc
Q 047440 418 VAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPAN 497 (619)
Q Consensus 418 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (619)
+++++..++.++.+||+|+...+ ..+ ..+...
T Consensus 152 ~l~~~~~~~~~~~lp~~p~~~~~-------------------------------------------~~~-----~~~~~~ 183 (368)
T TIGR00903 152 AVAAAGIILVLAALPALPFQAAE-------------------------------------------GFG-----FKDAVK 183 (368)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-------------------------------------------Ccc-----hHHHHH
Confidence 88888878788888998652211 000 000001
Q ss_pred chHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccch
Q 047440 498 SIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFED 574 (619)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~ 574 (619)
+++++++ ++.++...+..++.....+++.+|+|.|+.+ .|++.. .+....+..+.+.++. + +++||..|
T Consensus 184 ~~~~ll~--~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~---~-~~~d~~~r 252 (368)
T TIGR00903 184 EFGALAG--RKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIGV---A-VIPDRVAR 252 (368)
T ss_pred HHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHHH---H-HhhHHhhh
Confidence 2344444 7888888888888888899999999999976 478754 5666555555555554 3 56666543
No 26
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.94 E-value=1.5e-24 Score=227.44 Aligned_cols=261 Identities=15% Similarity=0.117 Sum_probs=206.2
Q ss_pred HHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 254 LANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
.+..+...++..+..|.+|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.+.. ++.+++.++
T Consensus 22 ~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a 101 (413)
T PRK15403 22 ILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT 101 (413)
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc
Confidence 3445556667889999999999999999999999999999999999999999999999999998887765 888888888
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccc
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNT 410 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~ 410 (619)
++++.++++|+++|++.+. +...+++.|++|+++|+++++++..+..+|.++||++++++.+.. +|+|
T Consensus 102 ---~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~---gw~~---- 171 (413)
T PRK15403 102 ---TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV---HWKV---- 171 (413)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHH----
Confidence 9999999999999998876 566788999999999999999999999999999999999987654 6777
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCC
Q 047440 411 LPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSE 490 (619)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (619)
+|++.+++.++..++.++.+||+++..++
T Consensus 172 -~f~~~~~~~~i~~~~~~~~lp~~~~~~~~-------------------------------------------------- 200 (413)
T PRK15403 172 -LFAIIAVMGLIAFVGLLLAMPETVKRGAV-------------------------------------------------- 200 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCccccCC--------------------------------------------------
Confidence 88888887777766666667876431110
Q ss_pred CCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhh
Q 047440 491 ESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYIS 569 (619)
Q Consensus 491 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~ 569 (619)
.......+++....+ ++.++...+..++.......+..+.|.++++.+|+++.+.++.......+.++++.+.+.++.
T Consensus 201 -~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~ 279 (413)
T PRK15403 201 -PFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVK 279 (413)
T ss_pred -CCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000011122233322 677777777777777777777788899999988999999999888777787787788773344
Q ss_pred hccchHH
Q 047440 570 NMFEDRQ 576 (619)
Q Consensus 570 d~~g~r~ 576 (619)
|+.++|.
T Consensus 280 ~~~~~~~ 286 (413)
T PRK15403 280 DPTEPRF 286 (413)
T ss_pred cCCchhH
Confidence 5554443
No 27
>PRK03699 putative transporter; Provisional
Probab=99.94 E-value=1.9e-24 Score=225.83 Aligned_cols=284 Identities=10% Similarity=0.010 Sum_probs=217.6
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I 324 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i 324 (619)
+++..+..+++.++.........+.+|.+.+++|+|..+.|++.+.+.+++.++++++|+++||+|||+++..+.+.. +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455666666777777777888899999999999999999999999999999999999999999999999988887655 8
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 325 GNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 325 ~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
+.++++++ ++++.++++|++.|++.+. +...+++.+++|+++|+.+++..+...++|..++|++.+++.... .
T Consensus 85 ~~~l~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~ 159 (394)
T PRK03699 85 AVAGLMFS---HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS--I 159 (394)
T ss_pred HHHHHHHc---chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Confidence 88888888 9999999999999999887 778899999999999999999998999999999999988874432 2
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCC
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (619)
+||| +|++.+++.++..++.++ ++.|+..+. +.
T Consensus 160 gw~~-----~f~~~~~~~~~~~~~~~~--~~~p~~~~~----------------------------------~~------ 192 (394)
T PRK03699 160 EWYW-----VYACIGLVYVAIFILTLF--SEFPALGKH----------------------------------AP------ 192 (394)
T ss_pred cHHH-----HHHHHHHHHHHHHHHHHh--cCCcccccc----------------------------------Cc------
Confidence 6777 777777665554443322 222221110 00
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHH
Q 047440 483 DGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNI 562 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 562 (619)
+ +... ..+.. .+++++...+..++...+...+..+.|.|+.+.+|++..+++.+.+...++.+++.+
T Consensus 193 -~-~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~ 259 (394)
T PRK03699 193 -K-ADKP----VAKEK-------WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMW 259 (394)
T ss_pred -c-ccCc----ccccc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHH
Confidence 0 0000 00000 134555556666666666677888999999888899999999999998899999998
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHHhhccc
Q 047440 563 IVGSYISNMFEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 563 ~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
+.+ +++||+++|+.+..+..+.+++++++...
T Consensus 260 ~~g-~l~dr~~~~~~l~~~~~~~~~~~~~~~~~ 291 (394)
T PRK03699 260 IFS-FIVRFFDLQRILTVLAGLALVLMYLFVNT 291 (394)
T ss_pred HHH-HHHHHhchhhHHHHHHHHHHHHHHHHHHc
Confidence 888 99999999998887766666655544433
No 28
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.94 E-value=1.4e-24 Score=227.94 Aligned_cols=303 Identities=14% Similarity=0.197 Sum_probs=217.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+|+.+....++.+...++.....+..|.+.+++|.+..+.|++.+++.++..+++++.|+++||+|||++++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46677788888899999999999999999999999999999999999999999999999999999999999988777655
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.++++++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++...+..+|.++||.+++.+....+
T Consensus 88 ~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 88 SAGTLACGFA---PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888 9999999999999999887 8889999999999999999999999999999999999998865442
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
.+|+| .|++.++..+ ..++....+||++.....+..... ..+........+
T Consensus 165 -~~w~~-----~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------------- 215 (405)
T TIGR00891 165 -DGWRA-----LFFISILPII-FALWLRKNIPEAEDWKEKHAGKAL------VRTMVDILYGGE---------------- 215 (405)
T ss_pred -ccHHH-----HHHHHHHHHH-HHHHHHHhCCCChhHHHHhhhhhh------hhhHHHHHhccc----------------
Confidence 13666 6666554433 334444566776543221000000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhc--Ccc-hHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLL--TPS-VKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTV 557 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 557 (619)
. ..............+.. .+. +........+..+.......++|.|+.+.+|++..+.+.+.+..++++
T Consensus 216 ------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 287 (405)
T TIGR00891 216 ------H--RIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGA 287 (405)
T ss_pred ------h--hhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 0 00000000000011100 111 222233333334444556677888988888999999999999999999
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCI 587 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i 587 (619)
+++.++.+ ++.||+|+|+.+..+.++.++
T Consensus 288 ~~g~~~~g-~l~dr~g~~~~~~~~~~~~~~ 316 (405)
T TIGR00891 288 IVGGCVFG-FLGDWLGRRKAYVCSLLAGQL 316 (405)
T ss_pred HHHHHHHH-HHHHHhCchhhhHHHHHHHHH
Confidence 99999988 999999999988877665533
No 29
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.94 E-value=2e-24 Score=230.40 Aligned_cols=277 Identities=16% Similarity=0.066 Sum_probs=202.8
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I 324 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i 324 (619)
+++.+.....+.++..++.....+.+|.+.+++|++..+.|++.+++.+++.+++++.|+++||+|||+++..+.+.. +
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 345555555666666666677888899999999999999999999999999999999999999999999887777654 7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc----
Q 047440 325 GNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF---- 399 (619)
Q Consensus 325 ~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~---- 399 (619)
+.++++++ ++++.++++|++.|++.+. +....++++++|+++||+++|+......+|..+++.+.+.+....
T Consensus 114 ~~~~~~~~---~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 190 (476)
T PLN00028 114 AVFCMSLV---SSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG 190 (476)
T ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888 8999999999999998877 556678999999999999999998877778777776665542211
Q ss_pred --cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcC
Q 047440 400 --KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDED 477 (619)
Q Consensus 400 --~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (619)
+..+||| +|++.+++.++..++.+++.++.|..... + .++
T Consensus 191 ~~~~~gWr~-----~f~i~g~l~l~~~l~~~~~~~~~p~~~~~-----------------------~---------~~~- 232 (476)
T PLN00028 191 APSFTAWRI-----AFFVPGLLHIIMGILVLTLGQDLPDGNYR-----------------------E---------LKK- 232 (476)
T ss_pred CcchhhhHH-----HHHHHHHHHHHHHHHHHHHcCcCCCCchh-----------------------h---------HHh-
Confidence 1126777 88888888776666665554444321100 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhH
Q 047440 478 GDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTV 557 (619)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 557 (619)
+.+. ........+++..+ +++++...+.+++.......+..+.|.|+.+.+|++..+++.+.++.++++
T Consensus 233 ------~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~ 301 (476)
T PLN00028 233 ------SGTM---PKDSFSKVLRYGVT--NYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMN 301 (476)
T ss_pred ------cCcc---ccccHHHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0000 00000011222222 567666666665555555666777889988888999999999999999999
Q ss_pred HHHHHHHHHhhhhccchH
Q 047440 558 LPVNIIVGSYISNMFEDR 575 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r 575 (619)
+++.++.| +++||+++|
T Consensus 302 ~ig~~~~G-~lsDr~~~r 318 (476)
T PLN00028 302 LFARPAGG-YLSDVAARR 318 (476)
T ss_pred HHHHhhhH-HHHHHHHHh
Confidence 99999988 999999865
No 30
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.93 E-value=7.1e-25 Score=226.59 Aligned_cols=288 Identities=16% Similarity=0.189 Sum_probs=216.2
Q ss_pred HHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH
Q 047440 253 NLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL 331 (619)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~ 331 (619)
.+.+.++..++..+..+.+|.+..+++.+..+.|++.+++.++.+++++++|+++||+|||++++.+.++. ++.++..+
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 44667777778888889999999999999999999999999999999999999999999999988777654 66666666
Q ss_pred hhcc--CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecc
Q 047440 332 AYDF--SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFN 407 (619)
Q Consensus 332 ~~~~--~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~ 407 (619)
+... .+++.++++|++.|++.+. +...++++|++|+++|++++|+.+.+..+|.++||++++++.... +|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---g~~~- 159 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL---GIKW- 159 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---hHHH-
Confidence 6100 1899999999999999888 888999999999999999999999999999999999999997654 6766
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhc-cCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCC
Q 047440 408 QNTLPGWIMAVAWLFYLVWLCISF-KEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSD 486 (619)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~-pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (619)
+|++.++..++..++.+... |++++.+.. +.+
T Consensus 160 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~ 192 (365)
T TIGR00900 160 ----AIWVDAVGFAISALLIVSVRIPELAASEIQ-------------------------------------------ALS 192 (365)
T ss_pred ----HHHHHHHHHHHHHHHHHhcccccCCCcccc-------------------------------------------ccc
Confidence 77776665544444333321 221110000 000
Q ss_pred CCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHh-hchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHH
Q 047440 487 ETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILL-SESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVG 565 (619)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 565 (619)
. .........++.+++ ++.++..+...++......... .+.|.|..+.+|++..+.+.+....+++.+++.++.+
T Consensus 193 ~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T TIGR00900 193 N--AVLRDTREGIKFVLK--NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLG 268 (365)
T ss_pred h--hHHHHHHhHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000112333333 6666666666666666665555 6778888887899999999999999999999999888
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 566 SYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 566 ~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
++.||.++++.+..+.++.+++++++...+
T Consensus 269 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (365)
T TIGR00900 269 -LLGRYFKRMALMTGAIFVIGLAILVVGLTP 298 (365)
T ss_pred -HHHHHhchhHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999988887777776666555443
No 31
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.93 E-value=3.8e-24 Score=226.29 Aligned_cols=295 Identities=16% Similarity=0.195 Sum_probs=214.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+++.+....++.+...++.....+.+|.+.+++|+++.+.+++.+++.++..++++++|+++||+|||+++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45566677777888888888888999999999999999999999999999999999999999999999999998888765
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.++++++ ++++.++++|++.|++.+. +....++.|++|+++|++++++...+.++|.+++|.+++.+.+..
T Consensus 94 ~~~~~~~~~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~- 169 (426)
T PRK12307 94 SVGTGLSGLA---SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY- 169 (426)
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC-
Confidence 888888888 9999999999999999887 888899999999999999999999999999999999988886655
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
+|+| +|++.++. .+..+......||+++....+. .++.
T Consensus 170 --~w~~-----~f~i~~~~-~~~~~~~~~~~p~~~~~~~~~~-------------------------------~~~~--- 207 (426)
T PRK12307 170 --GWRA-----AFFVGLLP-VLLVIYIRARAPESKEWEEAKL-------------------------------SGKG--- 207 (426)
T ss_pred --CHHH-----HHHHHHHH-HHHHHHHHHHCCCChHHHHhhh-------------------------------hccc---
Confidence 6777 66664433 2222222223344432111100 0000
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHH---HHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIY---FMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTV 557 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 557 (619)
+...... ......++++++ ++.++...... ++..........++|.|+.+. |+++...+...+..++++
T Consensus 208 ---~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 279 (426)
T PRK12307 208 ---KHSQSAW--SVFSLSMKGLFN--RAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGT 279 (426)
T ss_pred ---cccccch--hhhhHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence 0000000 001112334443 44443332222 222222234566788888775 999999999999989999
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
+++.++.+ ++.||+++|+.+..+.++.+++++.+.
T Consensus 280 ~~g~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~ 314 (426)
T PRK12307 280 VLGNIVWG-LCADRIGLKKTFSIGLLMSFLFIFPLF 314 (426)
T ss_pred HHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99998888 999999999988888776666554443
No 32
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.93 E-value=1.1e-24 Score=227.73 Aligned_cols=275 Identities=17% Similarity=0.126 Sum_probs=212.7
Q ss_pred HHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCc
Q 047440 259 LYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSS 337 (619)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~ 337 (619)
+..++.....+..|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||+++..+.+.. ++.++++++ ++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~~ 81 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---GA 81 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH---cC
Confidence 44556677788888899999999999999999999999999999999999999999888777665 888888888 89
Q ss_pred HHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHH
Q 047440 338 IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWI 415 (619)
Q Consensus 338 ~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~ 415 (619)
++.++++|++.|++.+. +...+++.|++|+++|++++++...+..+|.++||.+++++.... +|+| +|++
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~-----~~~~ 153 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF---SWQW-----AFII 153 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC---CchH-----HHHH
Confidence 99999999999999887 888999999999999999999999999999999999999987655 5766 7888
Q ss_pred HHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCC
Q 047440 416 MAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPP 495 (619)
Q Consensus 416 ~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (619)
.+++.++..++.++..|++++......+. .+. ...... ..+ . .........
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~--------~~~--------~--~~~~~~~~~ 204 (399)
T TIGR00893 154 EGVLGIIWGVLWLKFIPDPPQKAKWLTEE----------EKY-IVVGGL--------LAE--------Q--QGKGPSTPK 204 (399)
T ss_pred HHHHHHHHHHHhhheecCCCCccccCCHH----------HHh-hcchhh--------ccc--------c--ccccccCCC
Confidence 87777776666666777765432210000 000 000000 000 0 000000111
Q ss_pred CcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchH
Q 047440 496 ANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDR 575 (619)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r 575 (619)
....++.++ +++++..++..++.......+..+.|.|+.+.+|++..+.++..+..+++++++.++.+ ++.||+++|
T Consensus 205 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~ 281 (399)
T TIGR00893 205 KYQIKELLK--DRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGG-RLSDLLLRR 281 (399)
T ss_pred ccchHHHhc--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 123334443 67777778888888888888888999999988899999999999999999999999888 999999988
Q ss_pred H
Q 047440 576 Q 576 (619)
Q Consensus 576 ~ 576 (619)
+
T Consensus 282 ~ 282 (399)
T TIGR00893 282 G 282 (399)
T ss_pred c
Confidence 5
No 33
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.93 E-value=2.6e-24 Score=224.34 Aligned_cols=261 Identities=15% Similarity=0.066 Sum_probs=202.6
Q ss_pred hHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHH
Q 047440 264 TYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLL 342 (619)
Q Consensus 264 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~ 342 (619)
.....+.+|.+.+++|+|..+.|++.+++.+++.+++++.|+++||+|||+++..++++. ++.++++++ ++++.++
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a---~~~~~ll 101 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY---PQSALLL 101 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC---cchHHHH
Confidence 366789999999999999999999999999999999999999999999999999888766 999999999 9999999
Q ss_pred HHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHH
Q 047440 343 IGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAW 420 (619)
Q Consensus 343 ~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~ 420 (619)
++|+++|++.+. +...+++.+++| ++|++++|.+.++..+|..+|+.+++++.++.. +|++ .+.+.++..
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~--~w~~-----~~~~~~~~~ 173 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSE--TWYQ-----TLAWWALPA 173 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHH-----HHHHHHHHH
Confidence 999999999888 777888899987 789999999999999999999999998876543 6766 444433333
Q ss_pred HHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchH
Q 047440 421 LFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIR 500 (619)
Q Consensus 421 ~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (619)
++..+..++..++.|....+ . .... .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~----------------------------------------------~----~~~~----~ 199 (393)
T PRK09705 174 VVALFAWWWQSAREVASSHK----------------------------------------------T----TTTP----V 199 (393)
T ss_pred HHHHHHHHHHhcCCCccccC----------------------------------------------C----CcCC----c
Confidence 32222222221111110000 0 0000 0
Q ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHH
Q 047440 501 SAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLA 580 (619)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~ 580 (619)
+..+ +++.+...+..++...++.+...+.|.|+.+ +|++..++|...++.++++++++++.+ ++.||+++|+.+..
T Consensus 200 ~~l~--~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g-~l~~r~~~~~~~~~ 275 (393)
T PRK09705 200 RVVF--TPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMP-AMARHQDRRKLLML 275 (393)
T ss_pred cccc--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHH-HHHhhccchHHHHH
Confidence 1111 4555666666666667777888889999987 699999999999999999999999988 99999999998888
Q ss_pred HHHHHHHHHHhhc
Q 047440 581 SEIMVCIGILFSF 593 (619)
Q Consensus 581 ~~~~~~i~~~~~~ 593 (619)
+..+.+++++++.
T Consensus 276 ~~~l~~~~~~~~~ 288 (393)
T PRK09705 276 ALVLQLVGFCGFI 288 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777665543
No 34
>PRK10504 putative transporter; Provisional
Probab=99.93 E-value=4.4e-24 Score=228.75 Aligned_cols=327 Identities=19% Similarity=0.167 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
.++++.++.++..++.+...+.+|.+.+++|.++.+.|++.+.+.++..++.+++|+++||+|||++++.+.+.. ++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 456666777888888888899999999999999999999999999999999999999999999999988777655 7777
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccccee
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLT 405 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~ 405 (619)
++.++ ++++.++++|+++|++.+. +...+++.+++|+++|++++|+.....++|.++||.+++++.+.. +|+
T Consensus 91 ~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~---gw~ 164 (471)
T PRK10504 91 FCALS---GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA---SWH 164 (471)
T ss_pred HHHHh---CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc---cHH
Confidence 77787 8999999999999999888 788899999999999999999999999999999999999997755 677
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhh---hhcCCC-CcccCCCCCCCCcCC--C
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSAL---EKGLQQ-PLLITSEEKPEDEDG--D 479 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~--~ 479 (619)
| .|++...+..+..++.....|+.+....+ .+.............. ..+... ... ... ....-. .
T Consensus 165 ~-----~f~~~~~~~~l~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~ 235 (471)
T PRK10504 165 W-----IFLINIPVGIIGAIATLMLMPNYTMQTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLS--PLA-IAGLVAVGV 235 (471)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhCCCccccCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcc--hHH-HHHHHHHHH
Confidence 7 78877776666666665555554321110 0000000000000000 000000 000 000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHH
Q 047440 480 QEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLP 559 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 559 (619)
.-.......+....++..+. .+++ ++++...+...++...+......+.|.|++..+|.++...++......++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 312 (471)
T PRK10504 236 VALLLYLLHARNNNRALFSL-KLFR--TRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMG 312 (471)
T ss_pred HHHHHHHHHHhcCCCCccCH-HHhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00000000000000111122 1333 67777777777777777766777788888877899999999998888888887
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcc
Q 047440 560 VNIIVGSYISNMFEDRQILLASEIMVCIGILFSFH 594 (619)
Q Consensus 560 ~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~ 594 (619)
+..+.+ ++.||+|+|+++..+.++.+++.+++..
T Consensus 313 ~~~~~~-~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 313 MKRIVV-QVVNRFGYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred HHHHHH-HHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence 778888 9999999999998888877776655444
No 35
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.93 E-value=1.2e-24 Score=232.51 Aligned_cols=288 Identities=11% Similarity=0.109 Sum_probs=218.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHH----------------------HhCCccchhhHHHhhHHHHHHHHhh
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSM----------------------SLGAAATVCGIVIGAMAIAQVFSSV 301 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~g~~~s~~~~~~~i~~~ 301 (619)
+.++..+.+++++..+...+........+.+.+ +++++..+.|++.+++.+++.++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 455666666677777777777777777666665 7899999999999999999999999
Q ss_pred hhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHH
Q 047440 302 YFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFV 378 (619)
Q Consensus 302 ~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~ 378 (619)
+.|+++||+|||+++..+.++. ++.+++.++. ..+++.+++.|+++|++.+. +....++++++|+++|++++|+..
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999988777654 6666654431 15688899999999999888 888999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhh
Q 047440 379 SASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALE 458 (619)
Q Consensus 379 ~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (619)
.+..+|.++||++++++...+. +|++ +|++.+++.++..++.+.+.+|+|+..+...+ .+.+..+
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~--gw~~-----~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~--------~~~~~i~ 238 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWG--GWPM-----IFYVFGIVGCAWSLLWFVFPADDPSIHPCISK--------FEKKYIN 238 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccC--CCCe-----ehhhhhHHHHHHHHHHHHHhcCCcccCCCCCH--------HHHHHHH
Confidence 9999999999999999876522 6666 78888887777666666666776643221000 0000000
Q ss_pred hcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 047440 459 KGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYY 538 (619)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (619)
. . .+.+ ....+...+++++++ ++.++..++..++..+..+.+.+++|.|+.+.
T Consensus 239 ~----~------------------~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 291 (465)
T TIGR00894 239 S----S------------------LQGQ---KGSTRQSLPIKAIPK--SLPVWAIWFAIFGHFWLYTILPTYLPTFISWV 291 (465)
T ss_pred h----h------------------cccc---cCCCCCCCCHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 000111234555555 77888888888888888888899999999998
Q ss_pred ccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchH
Q 047440 539 FGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDR 575 (619)
Q Consensus 539 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r 575 (619)
+|++..+.|+..++..++++++..+.| +++||+++|
T Consensus 292 ~g~s~~~~g~~~~~~~~~~~i~~~~~g-~l~d~~~~~ 327 (465)
T TIGR00894 292 LRVSGKENGLLSSLPYLFAWLCSIFAG-YLADFLKSS 327 (465)
T ss_pred hCcChHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHc
Confidence 999999999999999999999999888 999987543
No 36
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.93 E-value=2.3e-24 Score=223.73 Aligned_cols=271 Identities=15% Similarity=0.132 Sum_probs=206.1
Q ss_pred hhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHH
Q 047440 263 NTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l 341 (619)
..+...+..|.+.+++|++..+.|++.+++.++..++++++|+++||+|||+++..+.+.. ++.++++++ ++++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~ 94 (377)
T TIGR00890 18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA---DSLAAL 94 (377)
T ss_pred HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH---HHHHHH
Confidence 3556778899999999999999999999999999999999999999999999988877665 888889999 999999
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHH
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVA 419 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~ 419 (619)
+++|++.|++.+. +....++.+++| ++|++++++...+.++|.++++++.+.+.... +|+| .|++.+++
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~-----~f~~~~~~ 165 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE---GVPA-----AFIYMGII 165 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc---cHHH-----HHHHHHHH
Confidence 9999999999887 666777888886 67999999999999999887766666664433 6777 78888888
Q ss_pred HHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcch
Q 047440 420 WLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSI 499 (619)
Q Consensus 420 ~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (619)
.++..++.+++++++++....+ +. + ........
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~-~----~~~~~~~~ 198 (377)
T TIGR00890 166 FLLVIVLGAFLIGYPPGQLIKT------------------------------------------NI-E----VSVKDYTV 198 (377)
T ss_pred HHHHHHHHHHheecCchhcccc------------------------------------------Cc-c----cchhhhhH
Confidence 7777777766766654321110 00 0 00000112
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHH
Q 047440 500 RSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILL 579 (619)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~ 579 (619)
++..+ ++..+...+..++..+.......+.+.|.++ +|++..+.+...+..+++.+++.++.+ ++.||+++|+.+.
T Consensus 199 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~ 274 (377)
T TIGR00890 199 WEMLR--TPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLG-ALSDKIGRQKTMS 274 (377)
T ss_pred HHHHc--CccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhh
Confidence 23332 5666665555555555555555566666654 588888889999999999999999988 9999999999988
Q ss_pred HHHHHHHHHHHhhcccc
Q 047440 580 ASEIMVCIGILFSFHVF 596 (619)
Q Consensus 580 ~~~~~~~i~~~~~~~~~ 596 (619)
.+.++.+++++++...+
T Consensus 275 ~~~~~~~~~~~~~~~~~ 291 (377)
T TIGR00890 275 IVFGISAVGMAAMLFIP 291 (377)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 88888877776655443
No 37
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.93 E-value=5.1e-24 Score=221.50 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=210.8
Q ss_pred hhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHH
Q 047440 262 VNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAV 340 (619)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~ 340 (619)
++..+..|.+|.+.+++|+++.+.|++.+++.++..++++++|+++||+|||+++..+.+.. ++.+++.++ ++++.
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---~~~~~ 81 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---QTIDQ 81 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---ccHHH
Confidence 45667789999999999999999999999999999999999999999999999998888765 888888888 89999
Q ss_pred HHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHH
Q 047440 341 LLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAV 418 (619)
Q Consensus 341 l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~ 418 (619)
++++|++.|++.+. +...+++.|++|+++|++++++...+..+|..+||.+++.+.+.. +|+| +|++.++
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~-----~~~~~~~ 153 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF---SWHA-----IFWVLAL 153 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChHH-----HHHHHHH
Confidence 99999999999887 788899999999999999999999999999999999999997654 6666 7888777
Q ss_pred HHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcc
Q 047440 419 AWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANS 498 (619)
Q Consensus 419 ~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (619)
+.++..++..+.+||+++..++ + .........+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~----~~~~~~~~~~ 186 (377)
T PRK11102 154 AAILAAALVFFFIPETLPKERR-------------------------------------------Q----PFHLRTTIRN 186 (377)
T ss_pred HHHHHHHHHHHhCCccCccccc-------------------------------------------C----CCChHHHHHH
Confidence 7777666666677775432111 0 0000000112
Q ss_pred hHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHH
Q 047440 499 IRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQIL 578 (619)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l 578 (619)
++..++ +++.+..++..++...+...+..+.|.++.+.+|+++.+.|....+.+++.+++.++.+ ++.||+|+|+.+
T Consensus 187 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~~r~g~~~~~ 263 (377)
T PRK11102 187 FASLFR--HKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINS-RFVRRVGALNML 263 (377)
T ss_pred HHHHHc--ChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCHHHHH
Confidence 222332 56666655555555555666667778888887899999999999999999999999988 999999999988
Q ss_pred HHHHHHHHH
Q 047440 579 LASEIMVCI 587 (619)
Q Consensus 579 ~~~~~~~~i 587 (619)
..+.++..+
T Consensus 264 ~~~~~~~~~ 272 (377)
T PRK11102 264 RFGLWIQFI 272 (377)
T ss_pred HHHHHHHHH
Confidence 877765443
No 38
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=220.52 Aligned_cols=275 Identities=16% Similarity=0.163 Sum_probs=217.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-H
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-L 322 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~ 322 (619)
+..++.+.++++..++..++.+.+....+...+.+|++++..|++.+.+.+.+.+++|++|+++||+.||+++..|++ |
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 455677788888999999999999999999999999999999999999999999999999999999999999988876 5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 323 FIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 323 ~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
.++.++++++ ..+|++.++|.+.|+|.+. ++++++++|.+|.++|++++++++.+..+|..+|.++++.+....+
T Consensus 109 ~~Av~~~~fs---~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 109 TLAVFASGFS---NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 5999999999 9999999999999999998 9999999999999999999999999999999999999999976664
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
.||| .|++.++++++++++.+++++|+++....+
T Consensus 186 --~Wr~-----af~~~avl~vi~~~L~~~f~~eP~rga~~~--------------------------------------- 219 (493)
T KOG1330|consen 186 --WWRW-----AFRGSAVLGVIVGLLVFLFVREPERGARDE--------------------------------------- 219 (493)
T ss_pred --ceEE-----EEEeehHHHHHHHHHHHhhccCcccccccc---------------------------------------
Confidence 4888 789999999999999999999987643320
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhchhhhhhhc---ccccchhHHHHHHHhhhh
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLLT-PSVKVQLLIYFMLKYVMEILLSESSVVTTYY---FGWSTGAVAIFLACLGLT 556 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~ 556 (619)
.+.......+....+++++.+.+ +.+....+.+....+...++..+.|.++... -|.+.....++..+..++
T Consensus 220 ----~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~ 295 (493)
T KOG1330|consen 220 ----VDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAG 295 (493)
T ss_pred ----cccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhh
Confidence 00000011233345666666554 5555556666666666666555556555432 345555555666666666
Q ss_pred HHHHHHHHHHhhhhcc
Q 047440 557 VLPVNIIVGSYISNMF 572 (619)
Q Consensus 557 ~~~~~~~~g~~l~d~~ 572 (619)
+.+|.++.| .++||+
T Consensus 296 G~lGvl~Gg-iisd~~ 310 (493)
T KOG1330|consen 296 GSLGVLFGG-IISDKL 310 (493)
T ss_pred chhhheehH-HHHHHH
Confidence 666666655 778873
No 39
>PRK10133 L-fucose transporter; Provisional
Probab=99.93 E-value=1.5e-23 Score=220.86 Aligned_cols=297 Identities=12% Similarity=0.117 Sum_probs=213.1
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I 324 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i 324 (619)
....+..+.+..++..+......+.+|.+.+++|+++.+.|++.+.+.+++.+++++.|+++||+|||+++..++++. +
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 344556666677777778888889999999999999999999999999999999999999999999999998888765 7
Q ss_pred HHHHH---HHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh-cc
Q 047440 325 GNVMY---ALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ-TN 398 (619)
Q Consensus 325 ~~~l~---~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~-~~ 398 (619)
+.+++ .++ ++++.++++|+++|+|.|. +...+++.++.|+++|...+++.+.+..+|..+||.+++.+. ..
T Consensus 104 ~~~l~~~~~~a---~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~ 180 (438)
T PRK10133 104 GAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77665 345 8999999999999999888 788888999877777777899999999999999999988653 11
Q ss_pred cc--------------ccceecc---ccchhHHHHHHH-HHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhc
Q 047440 399 FK--------------IYKLTFN---QNTLPGWIMAVA-WLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKG 460 (619)
Q Consensus 399 ~~--------------~~~w~w~---~~~~~~~~~~~~-~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (619)
.+ ..+|++. .|+.+|+....+ .++..++....+||.+.++..
T Consensus 181 ~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~-------------------- 240 (438)
T PRK10133 181 VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS-------------------- 240 (438)
T ss_pred CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--------------------
Confidence 00 0023321 134466543333 223222223333432110000
Q ss_pred CCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhh-hhcc
Q 047440 461 LQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVT-TYYF 539 (619)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 539 (619)
+..........+.+++ +|.++...+..++......+...+.+.|+ ++.+
T Consensus 241 ----------------------------~~~~~~~~~~~~~ll~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (438)
T PRK10133 241 ----------------------------DAKQGSFSASLSRLAR--IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_pred ----------------------------cccccchhhhHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 0000001112233333 66666666666666666666667778775 5677
Q ss_pred cccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 540 GWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 540 g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
|+++.++++.+....++.++++++.+ ++.||+|+|+++..+.++.++++++....+
T Consensus 291 g~s~~~ag~~~~~~~~~~~vG~~~~g-~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~ 346 (438)
T PRK10133 291 GMTAGFAANYLTGTMVCFFIGRFTGT-WLISRFAPHKVLAAYALIAMALCLISAFAG 346 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999988 999999999998888777666655544433
No 40
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.93 E-value=1.4e-23 Score=219.36 Aligned_cols=265 Identities=16% Similarity=0.148 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I 324 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i 324 (619)
.++.+.+.....++..+......|.+|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||++++.+.+.. +
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~ 85 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL 85 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 455566666666677777888899999999999999999999999999999999999999999999999988777665 7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 325 GNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 325 ~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
+.+++.++ ++++.+++.|++.|++.+. +....++.|.+++++++.++++...+..+|.++||++++++.+..
T Consensus 86 ~~~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~--- 159 (394)
T PRK11652 86 GTLVALFA---HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF--- 159 (394)
T ss_pred HHHHHHHH---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 77777888 8999999999999999877 677788899999999999999999999999999999999987654
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCC
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (619)
+|+| +|++.+++.++..++..+..||+++...+
T Consensus 160 g~~~-----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 192 (394)
T PRK11652 160 GWRA-----CYLFLLLLGAGVTFSMARWMPETRPADAR------------------------------------------ 192 (394)
T ss_pred ChHH-----HHHHHHHHHHHHHHHHHHhCCccCccccc------------------------------------------
Confidence 5666 78777776665555555667775432111
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHH
Q 047440 483 DGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNI 562 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 562 (619)
+......++..++ +++++...+..+........+....+.++.+.+|+++.+.+++.....++.++++.
T Consensus 193 ---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ 261 (394)
T PRK11652 193 ---------RTRVLASYRTLLS--NRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAW 261 (394)
T ss_pred ---------hhHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0001122233333 55555544444444444555556677888887899999999988887777777777
Q ss_pred HHHHhhhhccchH
Q 047440 563 IVGSYISNMFEDR 575 (619)
Q Consensus 563 ~~g~~l~d~~g~r 575 (619)
+.+ ++.||.+++
T Consensus 262 ~~~-~l~~~~~~~ 273 (394)
T PRK11652 262 FAG-RPNKRFSTL 273 (394)
T ss_pred HHH-HHHHHHHHH
Confidence 777 888888733
No 41
>TIGR00895 2A0115 benzoate transport.
Probab=99.92 E-value=1.9e-23 Score=218.71 Aligned_cols=307 Identities=19% Similarity=0.224 Sum_probs=213.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+++.+...++..+...++.....+..|.+.+++|.+..+.|++.+++.++.++++++.|+++||+|||+++..+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 34555666666677777777778888999999999999999999999999999999999999999999999988877655
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.+++.++ ++++.++++|++.|++.+. +...++++|++|+++|++++|+...+..+|.++||.+++++.+..
T Consensus 93 ~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 168 (398)
T TIGR00895 93 SVFTLLCALA---TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF- 168 (398)
T ss_pred HHHHHHHHHc---cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-
Confidence 777777787 8999999999999999887 888999999999999999999999999999999999999997655
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
+|++ ++++.+++.++..++.++++||+++....+.... .....+....+. ..+. ..
T Consensus 169 --g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~~--~~ 224 (398)
T TIGR00895 169 --GWRS-----LFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPET-------VRRIVNAIAPQM--------QAEA--QS 224 (398)
T ss_pred --ccee-----ehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHH-------HHHHHHHHHHhc--------cccc--cc
Confidence 5666 6777766666666666777888765322210000 000000000000 0000 00
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLP 559 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 559 (619)
+ .++........+...+.+++.. .+..+...+..++..........+.| ++.+.+|++..+.+...+..+++.++
T Consensus 225 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 300 (398)
T TIGR00895 225 A---LPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVI 300 (398)
T ss_pred c---ccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0000000001111122222211 22333344444455555566666677 44455699999999999999999999
Q ss_pred HHHHHHHhhhhccchHHHHHHHHH
Q 047440 560 VNIIVGSYISNMFEDRQILLASEI 583 (619)
Q Consensus 560 ~~~~~g~~l~d~~g~r~~l~~~~~ 583 (619)
+.++.+ ++.||+++|..+....+
T Consensus 301 ~~~~~~-~l~~~~~~~~~~~~~~~ 323 (398)
T TIGR00895 301 GSIIFG-WLADRLGPRVTALLLLL 323 (398)
T ss_pred HHHHHH-HHHhhcchHHHHHHHHH
Confidence 999988 99999999854443333
No 42
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.92 E-value=4.1e-24 Score=222.01 Aligned_cols=273 Identities=13% Similarity=0.096 Sum_probs=206.7
Q ss_pred HHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhcc
Q 047440 257 TFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDF 335 (619)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~ 335 (619)
.++..++.....+..|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||++++.+.++. ++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--- 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh---
Confidence 3455566777788889999999999999999999999999999999999999999999998887665 888888888
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHH-HHhhhhhccccccceeccccchh
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGP-ALAGLLQTNFKIYKLTFNQNTLP 412 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~-~i~~~l~~~~~~~~w~w~~~~~~ 412 (619)
++++.++++|++.|++.+. +...++++|++|+++|++++++...+..+|.+++| ++++.+.... +|+| .
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~-----~ 152 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY---SWHW-----V 152 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC---Cchh-----H
Confidence 8999999999999999887 88889999999999999999999999999999999 4666665443 6776 7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCC
Q 047440 413 GWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEES 492 (619)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (619)
|++.+++.++..++.+++.||+++........ +...++. +. ..+......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~----~~-~~~~~~~~~ 202 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAE-------------------------EMPNEEP----DG-DAEKKEEEL 202 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCccccccCccc-------------------------cCccccc----cc-ccccccccc
Confidence 88877777776677777777765432210000 0000000 00 000000000
Q ss_pred CCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhcc
Q 047440 493 HPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMF 572 (619)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~ 572 (619)
.......+...+ ++.++...+..++.......+..+.|.|+.+.+|++..+.+...+..+++++++.++.+ ++.||.
T Consensus 203 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~r~ 279 (379)
T TIGR00881 203 TKKQIFLQYVLL--NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAG-WLSDKL 279 (379)
T ss_pred cchHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHH-HHHHHH
Confidence 011112233333 67777777777777777788888899999988899999999999999999999999988 999985
Q ss_pred c
Q 047440 573 E 573 (619)
Q Consensus 573 g 573 (619)
.
T Consensus 280 ~ 280 (379)
T TIGR00881 280 F 280 (379)
T ss_pred c
Confidence 3
No 43
>PRK09952 shikimate transporter; Provisional
Probab=99.92 E-value=4.1e-23 Score=218.36 Aligned_cols=288 Identities=14% Similarity=0.162 Sum_probs=201.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHH-HHh--CCccchhhHHH-----hhHHHHHHHHhhhhhhhccccCchhH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYS-MSL--GAAATVCGIVI-----GAMAIAQVFSSVYFSAWSNRSYFKPL 315 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--g~s~~~~g~~~-----s~~~~~~~i~~~~~G~l~Dr~Grr~~ 315 (619)
.++++.+....++.+++.++........|.+. +++ +.++. .|++. ++..++..+++++.|+++||+|||++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 44556677777788888888888887777554 445 66665 46553 34556678999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhccCcHH--------HHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHH
Q 047440 316 VFSSIVLF-IGNVMYALAYDFSSIA--------VLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALG 384 (619)
Q Consensus 316 ~~~~~~~~-i~~~l~~~~~~~~~~~--------~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 384 (619)
++.++++. +++++++++ ++++ .++++|+++|++.|. +...+++.|++|+++|++..+....+..+|
T Consensus 97 l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G 173 (438)
T PRK09952 97 LMLTVWMMGIATALIGLL---PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG 173 (438)
T ss_pred HHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 98888765 889999998 7876 588999999999988 788899999999999999999999999999
Q ss_pred hHHHHHHhhhhhccc-----cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhh
Q 047440 385 MACGPALAGLLQTNF-----KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEK 459 (619)
Q Consensus 385 ~~~g~~i~~~l~~~~-----~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (619)
.++++.+..++.... ..++||+ +|++.++..++ .+......||+|+....+.
T Consensus 174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~-----~f~~~~~~~l~-~~~l~~~~~es~~~~~~~~----------------- 230 (438)
T PRK09952 174 LLLSTGLVSLISMMTTDEQFLSWGWRI-----PFLFSIVLVLI-ALWVRNGMEESAEFEQQQH----------------- 230 (438)
T ss_pred HHHHHHHHHHHHHhCCHHHhhccChHH-----HHHHHHHHHHH-HHHHHHhCCCChhHHHHHh-----------------
Confidence 999888777764321 1246666 88877665433 3333345677664322100
Q ss_pred cCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHH-HHHHHHHHHHHHhhchhhhhhhc
Q 047440 460 GLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLL-IYFMLKYVMEILLSESSVVTTYY 538 (619)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 538 (619)
+.++ ........+.+.+ +++.+.... ..++..+..+....+.|.|+.+.
T Consensus 231 ------------------------~~~~----~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 280 (438)
T PRK09952 231 ------------------------EQAA----AKKRIPVIEALLR--HPGAFLKIIALRLCELLTMYIVTAFALNYSTQN 280 (438)
T ss_pred ------------------------hccc----ccccCCHHHHHHH--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0000011112222 444444433 44555566677778889999888
Q ss_pred ccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 047440 539 FGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGI 589 (619)
Q Consensus 539 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~ 589 (619)
+|++...........++.++++.++.| +++||+|||+.+..+.++.+++.
T Consensus 281 ~g~s~~~~~~~~~~~g~~~~i~~~~~g-~l~Dr~grr~~~~~~~~~~~~~~ 330 (438)
T PRK09952 281 LGLPRELFLNIGLLVGGLSCLTIPCFA-WLADRFGRRRVYITGALIGTLSA 330 (438)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCchHHHHHHHHHHHHHH
Confidence 888887655555556667777777777 99999999998887766655544
No 44
>PRK11043 putative transporter; Provisional
Probab=99.92 E-value=4.9e-23 Score=215.89 Aligned_cols=268 Identities=15% Similarity=0.168 Sum_probs=203.1
Q ss_pred HHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH
Q 047440 253 NLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL 331 (619)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~ 331 (619)
..+..++..+...+..|.+|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||++++.+.+.. ++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 90 (401)
T PRK11043 11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW 90 (401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 33334455566778889999999999999999999999999999999999999999999999998887655 78888888
Q ss_pred hhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecccc
Q 047440 332 AYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQN 409 (619)
Q Consensus 332 ~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~ 409 (619)
+ ++++.++++|++.|++.+. +...+++.|++|+++++...+.......+|.++||.+++++.+.+ +|++
T Consensus 91 ~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---g~~~--- 161 (401)
T PRK11043 91 V---ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF---GWQA--- 161 (401)
T ss_pred h---cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHH---
Confidence 8 8999999999999999776 666788999999999999999999999999999999999997665 5666
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCC
Q 047440 410 TLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETS 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (619)
+|++.+++.++..++.++ ++++++..+.
T Consensus 162 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------------------------------------- 189 (401)
T PRK11043 162 --IFATLFAITLLLILPTLR-LKPSKKARKQ------------------------------------------------- 189 (401)
T ss_pred --HHHHHHHHHHHHHHHHHH-cCCCCCcccc-------------------------------------------------
Confidence 777777776665554443 4443221000
Q ss_pred CCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhh
Q 047440 490 EESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYIS 569 (619)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~ 569 (619)
.+...+++...+ +++.+...+...+.......+..+.|.+..+ +|++..+.|+......++.++++++.+ ++.
T Consensus 190 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~-~l~ 262 (401)
T PRK11043 190 ---SQDALTFKQLLK--SKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCR-AAL 262 (401)
T ss_pred ---chHHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 001112333333 5555555555555555556666777888766 599999999888877788888888877 999
Q ss_pred hccchHHHHHHHHHHHHHH
Q 047440 570 NMFEDRQILLASEIMVCIG 588 (619)
Q Consensus 570 d~~g~r~~l~~~~~~~~i~ 588 (619)
||+++++....+.+..+++
T Consensus 263 ~r~~~~~~~~~~~~~~~~~ 281 (401)
T PRK11043 263 QKWGGEQLLPWLLVLFAVS 281 (401)
T ss_pred HHcCHHHHHHHHHHHHHHH
Confidence 9999988765554444443
No 45
>PRK15075 citrate-proton symporter; Provisional
Probab=99.92 E-value=6.9e-23 Score=216.70 Aligned_cols=280 Identities=14% Similarity=0.176 Sum_probs=197.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHH-hhH-----HHHHHHHhhhhhhhccccCchhHHHH
Q 047440 245 YHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVI-GAM-----AIAQVFSSVYFSAWSNRSYFKPLVFS 318 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-s~~-----~~~~~i~~~~~G~l~Dr~Grr~~~~~ 318 (619)
.+++.....+++.++..++...+.+..|.+.++++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 455567777889999999999999999999999999887765443 322 22234788999999999999999988
Q ss_pred HHHHH-HHHHHHHHhhccCcHH--------HHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHH
Q 047440 319 SIVLF-IGNVMYALAYDFSSIA--------VLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMAC 387 (619)
Q Consensus 319 ~~~~~-i~~~l~~~~~~~~~~~--------~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 387 (619)
+.+.. ++.++++++ ++++ .++++|+++|++.+. +...++++|++|+++|++++++...+..+|..+
T Consensus 92 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 92 TLSIMASGTLLIAFV---PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 88765 888888888 7776 468999999999887 777899999999999999999999998899888
Q ss_pred HHHHhhhhhccc-----cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCC
Q 047440 388 GPALAGLLQTNF-----KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQ 462 (619)
Q Consensus 388 g~~i~~~l~~~~-----~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (619)
|+.+++.+.... ..++||| +|++..+. ++...+.....||++.....
T Consensus 169 g~~~g~~l~~~~~~~~~~~~gWr~-----~f~~~~~~-~~~~~~~~~~~~e~~~~~~~---------------------- 220 (434)
T PRK15075 169 AALLGYLLNQWLSPAQMAEWGWRI-----PFLIGCLI-VPFIFLIRRSLEETEEFLAR---------------------- 220 (434)
T ss_pred HHHHHHHHHHhCCHHHHhccchHH-----HHHHHHHH-HHHHHHHHHhcCCCHHHHHh----------------------
Confidence 888888773211 1236666 77764433 22222222222332210000
Q ss_pred CCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHH-HHHHHHHHHHHHHHhhchhhhhhhcccc
Q 047440 463 QPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQ-LLIYFMLKYVMEILLSESSVVTTYYFGW 541 (619)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 541 (619)
.. ..+....++...+ +++.+.. +...++..........+.|.|+++.+|+
T Consensus 221 ---------------------~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~ 271 (434)
T PRK15075 221 ---------------------KH------RPSMREIFRSLAA--NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHL 271 (434)
T ss_pred ---------------------hh------ccccccHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 0000111222222 2233322 3333444555667777899999988899
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 047440 542 STGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMV 585 (619)
Q Consensus 542 s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~ 585 (619)
+..+.++...+.+++++++.++.| +++||+|+|+.+..+.++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~g-~l~Dr~g~r~~~~~~~~~~ 314 (434)
T PRK15075 272 SAADSLLVTLCVGVSNFIWLPIGG-ALSDRIGRRPVLIAFTVLA 314 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHH
Confidence 999999888888888888888888 9999999999877665443
No 46
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.92 E-value=6.6e-23 Score=211.90 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=207.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL 322 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~ 322 (619)
+..++.+.+..++.++......+..+..+.+.+ ++|+|.++.+++.+++.+++.++.++.|++.||+|.|+++..++++
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 445677888888888888888899998888877 7999999999999999999999999999999999999988777765
Q ss_pred H-HHHHHHHHhh--ccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh--
Q 047440 323 F-IGNVMYALAY--DFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ-- 396 (619)
Q Consensus 323 ~-i~~~l~~~~~--~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~-- 396 (619)
. +.+++.+++. ..++++.+++.|++.|++.+. +.....+++++|+++||+++|+.....++|..++++++..+.
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4 7777776641 126899999999999998555 889999999999999999999997777777766655554432
Q ss_pred ---cccccccee--------ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCc
Q 047440 397 ---TNFKIYKLT--------FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPL 465 (619)
Q Consensus 397 ---~~~~~~~w~--------w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (619)
..+ +|. -.+++.++++..++.++..++.+++.++.+.. +
T Consensus 190 ~l~~~~---G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~-------------------------- 239 (462)
T PRK15034 190 PVFAFL---GVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-R-------------------------- 239 (462)
T ss_pred HHHHHh---ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-c--------------------------
Confidence 111 110 00123356666666566666666665543320 0
Q ss_pred ccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchh
Q 047440 466 LITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGA 545 (619)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 545 (619)
..........+ +|..|.+++.+++...++.++..++|.|..+.+ +...
T Consensus 240 ----------------------------~~~~~~~~vlk--~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~ 287 (462)
T PRK15034 240 ----------------------------ASIADQLPVLQ--RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVN 287 (462)
T ss_pred ----------------------------cCHHHHHHHhC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHH
Confidence 00111222333 788999999998888888888889999988755 3333
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 047440 546 VAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGIL 590 (619)
Q Consensus 546 ~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~ 590 (619)
......+..+.+.++..+.| +++||+|+++++.++++.++++..
T Consensus 288 ~l~~~~l~~l~~~l~rplgG-~LADRiG~~~vl~~~~i~~~i~~~ 331 (462)
T PRK15034 288 ILRLAFFGPFIGAIARSVGG-AISDKFGGVRVTLINFIFMAIFSA 331 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhH-HHHHhcCchHHHHHHHHHHHHHHH
Confidence 32223344566666777777 999999999999988876666653
No 47
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.92 E-value=2.6e-23 Score=224.03 Aligned_cols=321 Identities=16% Similarity=0.176 Sum_probs=205.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHh-----CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSL-----GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFS 318 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~ 318 (619)
+.+++.+.++.++.+..+++........|.+..++ +.+..+.+++.+.+.++.+++++++|+++||+|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45667777778888889999888888888776643 3456678999999999999999999999999999999988
Q ss_pred HHHHH-HHHHHHHHhhccCc------HHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHH
Q 047440 319 SIVLF-IGNVMYALAYDFSS------IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGP 389 (619)
Q Consensus 319 ~~~~~-i~~~l~~~~~~~~~------~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 389 (619)
+.++. ++.++++++ ++ ++.++++|++.|++.|. +...++++|++|+++|++++++...+..+|.++|+
T Consensus 92 ~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 92 ELIIMIIATVASGLS---PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHc---cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 77655 777777776 43 78999999999999988 88999999999999999999999999999999999
Q ss_pred HHhhhhhccc--------------------cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCC
Q 047440 390 ALAGLLQTNF--------------------KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNA 449 (619)
Q Consensus 390 ~i~~~l~~~~--------------------~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~ 449 (619)
.++.++.... ..|+||| ++.+.++..+ ..++..+++||+|+....+++.++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~-----~~~~~~ip~~-i~~~~~~~lpESpr~l~~~~~~~~~-- 240 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI-----LIGFGAVPAL-LALYFRLTIPETPRYTADVAKDVEQ-- 240 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHH-----HHHHHHHHHH-HHHHHHHhCCCCHHHHHHhCcchHH--
Confidence 9988763211 1124555 7766555544 4445557889999864321111000
Q ss_pred CCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc-Ccch----HHHHHHHHHHHHHH
Q 047440 450 EPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL-TPSV----KVQLLIYFMLKYVM 524 (619)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~ 524 (619)
..+....-...+. .++.+ +..+.+.+ ....+.+++++++.. .++. +......++..+.+
T Consensus 241 ---a~~~~~~~~~~~~-------~~~~~---~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (502)
T TIGR00887 241 ---AASDMSAVLQVKI-------EAEPD---EVEKASTA---VEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAF 304 (502)
T ss_pred ---HHHHHHHHhcccc-------ccCcc---cccchhcc---ccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 00000 00000000 001112455555421 1222 11122233344445
Q ss_pred HHHhhchhhhhhhcccccchhHHH------------HHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 525 EILLSESSVVTTYYFGWSTGAVAI------------FLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 525 ~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
++...+.|.++.+ .|++....+. ...+..++.+++.++.+ +++||+|||++++++.++++++++++
T Consensus 305 y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-~l~dr~gRR~~l~~~~~~~~~~~~~l 382 (502)
T TIGR00887 305 YGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV-FLVDIIGRKPIQLMGFFILTVLFFVL 382 (502)
T ss_pred HccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 5666667777765 4776543211 12233344555666667 99999999999888877766665544
Q ss_pred c
Q 047440 593 F 593 (619)
Q Consensus 593 ~ 593 (619)
.
T Consensus 383 ~ 383 (502)
T TIGR00887 383 G 383 (502)
T ss_pred H
Confidence 3
No 48
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.92 E-value=8.4e-23 Score=217.13 Aligned_cols=285 Identities=12% Similarity=0.072 Sum_probs=197.9
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IG 325 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~ 325 (619)
|..+...++......+......+.+|.+.++ |++..+.|++.+++.++..++++++|+++||+|||++++.+.+.. ++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence 4333333334444444444456677877777 999999999999999999999999999999999999988887655 67
Q ss_pred HHHHHHhhc-cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhH-HHHHHhhhhhccccc
Q 047440 326 NVMYALAYD-FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMA-CGPALAGLLQTNFKI 401 (619)
Q Consensus 326 ~~l~~~~~~-~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~i~~~l~~~~~~ 401 (619)
.++++++.. ..+++.++++|++.|++.|. +...+.+.+++|+++|++++|+++.+..+|.. ++|+++..+....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-- 184 (452)
T PRK11273 107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN-- 184 (452)
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 766666521 14788899999999998877 66778889999999999999999999998864 5565544333222
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
+|+| +|++.+++.++..++.++++||+|+....+.. ++.. .+. .++
T Consensus 185 -gw~~-----~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~---------------~~~--~~~ 230 (452)
T PRK11273 185 -DWHA-----ALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-----------EEYK---------------NDY--PDD 230 (452)
T ss_pred -cHHH-----HHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-----------hhhh---------------hcc--ccc
Confidence 6766 78888877777777777788887753211000 0000 000 000
Q ss_pred CCCCCCCCCCCCCCCcchHHHH--Hhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHH
Q 047440 482 YDGSDETSEESHPPANSIRSAY--RLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVL 558 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 558 (619)
.. ... ....+.++.+ ..+ ++.++...+..++.....++...++|.|+++..|++..+++....+.+++.+
T Consensus 231 --~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~ 303 (452)
T PRK11273 231 --YN-EKH----EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 303 (452)
T ss_pred --cc-ccc----CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00 000 0001122211 111 5667777777777777777888899999998889999999988888888888
Q ss_pred HHHHHHHHhhhhcc--chHH
Q 047440 559 PVNIIVGSYISNMF--EDRQ 576 (619)
Q Consensus 559 ~~~~~~g~~l~d~~--g~r~ 576 (619)
++.++.| +++||+ +||.
T Consensus 304 ~g~~~~G-~l~dr~~~~r~~ 322 (452)
T PRK11273 304 PGTLLCG-WMSDKVFRGNRG 322 (452)
T ss_pred HHHHHHH-HHHHHHccCCcc
Confidence 8888888 999998 4443
No 49
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.92 E-value=6.3e-23 Score=213.09 Aligned_cols=272 Identities=13% Similarity=0.126 Sum_probs=202.0
Q ss_pred HHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHH-HHHHHHH-HHHHHHHH
Q 047440 255 ANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLV-FSSIVLF-IGNVMYAL 331 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~-~~~~~~~-i~~~l~~~ 331 (619)
+..++..++.++..|.+|.+. +++|.++.+.|++.+++.++..+++++.|+++||+|||+.+ +.+.+.. ++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 446677778888999999876 57999999999999999999999999999999999988765 4455554 66677788
Q ss_pred hhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhH--hHHHHHHHHHHhHHHHHHhhhhhccccccceecc
Q 047440 332 AYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQA--SAGFVSASALGMACGPALAGLLQTNFKIYKLTFN 407 (619)
Q Consensus 332 ~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~ 407 (619)
+ ++++.+++.|++.|.+.+. |...+++.++.|++.|+.+ .+....+.++|.++||++++++.+.. +|+|
T Consensus 84 ~---~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---~~~~- 156 (375)
T TIGR00899 84 N---RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF---GFTV- 156 (375)
T ss_pred c---chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc---ccHH-
Confidence 8 8999999999998877665 7777888898887777654 57788888999999999999997655 6766
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCC
Q 047440 408 QNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDE 487 (619)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (619)
+|++.+++.++..++.++++||.|+....+
T Consensus 157 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 186 (375)
T TIGR00899 157 ----MFLTAALAFVLCGVLVWLFLPSYPRGAPGA---------------------------------------------- 186 (375)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCCcccCcccc----------------------------------------------
Confidence 888888877777777777788865421110
Q ss_pred CCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHh
Q 047440 488 TSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSY 567 (619)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~ 567 (619)
....+.+..++ +++.+......++..........+.|.|+.+.+|.++.+.|.+.....+..+++..+.+ +
T Consensus 187 ------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g-~ 257 (375)
T TIGR00899 187 ------LTRLEVRGLLA--SRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAG-Y 257 (375)
T ss_pred ------cCcchhhhhhc--CcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHH-H
Confidence 00001111222 44455444444544444455556678888888899999999888777666777777777 9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhh
Q 047440 568 ISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 568 l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
+.||+|+|+.+.++.++.+++++.+
T Consensus 258 l~~r~g~~~~~~~~~~~~~~~~~~~ 282 (375)
T TIGR00899 258 LIKRFGKRRLMLLAALAGVAFYTGL 282 (375)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHH
Confidence 9999999998877766555554433
No 50
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.91 E-value=2.5e-23 Score=216.77 Aligned_cols=271 Identities=11% Similarity=0.052 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMY 329 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~ 329 (619)
...+.+.++..++..+....++.+..++|.++.+.+++.+++.+++.++++++|+++||+|||++++.+.++. ++.+++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 3445666776766655666667778899999999999999999999999999999999999999998888765 677666
Q ss_pred HHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecc
Q 047440 330 ALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFN 407 (619)
Q Consensus 330 ~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~ 407 (619)
+++ .+. ++.|+++|++.+. |+..+++.|++|+++|++++|+......+|.++||.++|++.+. .|
T Consensus 86 ~~~---~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~--- 152 (393)
T PRK11195 86 LFG---IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HA--- 152 (393)
T ss_pred HHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---
Confidence 666 443 7889999999888 89999999999999999999999999999999999999999653 22
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCC
Q 047440 408 QNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDE 487 (619)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (619)
..++++.+++.++. ++..+.+||++.+.+.. + .+.
T Consensus 153 --~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~----------------------~--------------------~~~ 187 (393)
T PRK11195 153 --EAALAVCALIYLLA-ALFNLFIPRLGARRPGQ----------------------S--------------------WNP 187 (393)
T ss_pred --HHHHHHHHHHHHHH-HHHHhcCCCCccccccc----------------------C--------------------CCH
Confidence 23555554443333 33445677765321110 0 000
Q ss_pred CCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHh
Q 047440 488 TSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSY 567 (619)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~ 567 (619)
...........+.+++ ++.+.......++...+.......+|.|+++.+|+++.+.|++.+..+++.++++++.+ +
T Consensus 188 -~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~-~ 263 (393)
T PRK11195 188 -IALLRDFFHACRVLWR--DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAA-R 263 (393)
T ss_pred -HHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0000000011222232 45544444444444455555556677888888899999999999999999999999998 8
Q ss_pred hhhccchHHHHHHHHH
Q 047440 568 ISNMFEDRQILLASEI 583 (619)
Q Consensus 568 l~d~~g~r~~l~~~~~ 583 (619)
+.||.++++.+..+.+
T Consensus 264 l~~~~~~~~~~~~g~~ 279 (393)
T PRK11195 264 LVTLETVLRVLPAGIL 279 (393)
T ss_pred HhcCCcccchHHHHHH
Confidence 9999888877766643
No 51
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.91 E-value=6.8e-23 Score=214.69 Aligned_cols=279 Identities=17% Similarity=0.154 Sum_probs=196.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF- 323 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~- 323 (619)
.++.+...++..++..++.++..+.+|.+. +++|.|+.+.|++.+++.+++++++++.|+++||+|||++++.+.+..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA 92 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence 445666677788888889999999999865 579999999999999999999999999999999999999998887654
Q ss_pred HHHHHHHHhhcc-----CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 324 IGNVMYALAYDF-----SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 324 i~~~l~~~~~~~-----~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
++.+++.++... .+++.+++.|++.|++.+. +...+++.+++|+++|++++++...+..+|.++||.+++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 555544443111 2577899999999999887 777888999999999999999999999999999999999997
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCc
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDE 476 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (619)
..+ +|++ .+++.+++.++..+. ....|+.++ ..
T Consensus 173 ~~~---g~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~--~~------------------------------------ 205 (399)
T PRK05122 173 HWG---GLAG-----LGLLIMLLALLGLLL-ARPRPAVPP--VK------------------------------------ 205 (399)
T ss_pred Hcc---cHHH-----HHHHHHHHHHHHHHH-HhcCCCCCC--CC------------------------------------
Confidence 655 5655 555544443322221 111111110 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhh
Q 047440 477 DGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLT 556 (619)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 556 (619)
..+.++++..+ +.+......++..++......+.+.|..+. |+ ...+...+..+++
T Consensus 206 -----------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 261 (399)
T PRK05122 206 -----------------GERLPFRRVLG----RVWPYGMGLALASIGFGTIATFITLYYAAR-GW--DGAALALTLFGVA 261 (399)
T ss_pred -----------------ccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cc--ccchHHHHHHHHH
Confidence 00011222221 122222223333444455556677777654 55 3456666777788
Q ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 557 VLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 557 ~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
.+++.++.+ ++.||+++|+.+..+.++.+++++++...+
T Consensus 262 ~~~~~~~~g-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (399)
T PRK05122 262 FVGARLLFG-NLINRLGGLRVAIVSLLVEILGLLLLWLAP 300 (399)
T ss_pred HHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888 999999999988888777777766555443
No 52
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.91 E-value=9.5e-23 Score=213.45 Aligned_cols=275 Identities=12% Similarity=0.077 Sum_probs=199.2
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IG 325 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~ 325 (619)
++.+....++.++..++.+...+.++.+.+++|.+..+.|++.+.+.++..++++++|+++||+|||+++..+.+.. ++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~ 91 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVG 91 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 34556666777777777777777888899999999999999999999999999999999999999999988777654 55
Q ss_pred HHHHHH-hhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHh-HHHHHHhhhhhccccc
Q 047440 326 NVMYAL-AYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGM-ACGPALAGLLQTNFKI 401 (619)
Q Consensus 326 ~~l~~~-~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~g~~i~~~l~~~~~~ 401 (619)
.+++.. .....+++.+++.|++.|++.+. +...+++.+++|+++|++++|+..++.++|. ++||++++++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~-- 169 (402)
T TIGR00897 92 HAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF-- 169 (402)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 544422 11125788899999999999876 6667888899999999999999999999997 68999999886654
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
+|+. ++|....+..+..++.+++.++.+++...
T Consensus 170 -g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 202 (402)
T TIGR00897 170 -GEMN-----TLWSALAFVLTGGVIALFSNKDIFTPQHM----------------------------------------- 202 (402)
T ss_pred -chHH-----HHHHHHHHHHHHHHHHHhccCCCCCcccc-----------------------------------------
Confidence 3332 23333222223333334444543221110
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHH
Q 047440 482 YDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVN 561 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 561 (619)
+ ++ .+..+....++.+++ +|.++...+..++......++.++.|.|.++ +|++..+.+.+.+..+++++++.
T Consensus 203 --~-~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~ 274 (402)
T TIGR00897 203 --Q-TR--EKFSELGKAATILFT--NPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFN 274 (402)
T ss_pred --c-CC--cchhhHHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHH
Confidence 0 00 000000112233333 6777777777777777778888889988866 69999999998888899999999
Q ss_pred HHHHHhhhhccchHHHHH
Q 047440 562 IIVGSYISNMFEDRQILL 579 (619)
Q Consensus 562 ~~~g~~l~d~~g~r~~l~ 579 (619)
.+.| +++||+++|+.+.
T Consensus 275 ~~~g-~l~dr~~~~~~~~ 291 (402)
T TIGR00897 275 VIFG-IVGDKLGWMNTVR 291 (402)
T ss_pred HHHH-HHHHhhcchhHHH
Confidence 9998 9999999887653
No 53
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.91 E-value=1.8e-22 Score=210.00 Aligned_cols=273 Identities=15% Similarity=0.153 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
.+..++++.++..++.+...+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||+++..+.+.. ++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666788888888999999999999999999999999999999999999999999999999999988877765 7888
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccccee
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLT 405 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~ 405 (619)
+++++ ++++.++++|++.|++.+. +...+.+.+..++++|+++++.+..+..+|..+||++++.+.... .|.
T Consensus 87 ~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~ 160 (381)
T PRK03633 87 GLGLM---VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL---MSV 160 (381)
T ss_pred HHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cch
Confidence 88888 9999999999999999877 666777888899999999999999999999999999999985532 111
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCC
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGS 485 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (619)
..+..+.+......+ .+.+.+++..++
T Consensus 161 ------~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------------------------------- 187 (381)
T PRK03633 161 ------LPWVTGLVLAAILPL--LFTRILNQQAEN--------------------------------------------- 187 (381)
T ss_pred ------HHHHHHHHHHHHHHH--HHhcccCCCCCC---------------------------------------------
Confidence 122222221111111 111211110000
Q ss_pred CCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHH
Q 047440 486 DETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVG 565 (619)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 565 (619)
++..+..+.++ ++..+......++..........++|.|.++. |.+...+|.+.+...++.++++.+.+
T Consensus 188 --------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g 256 (381)
T PRK03633 188 --------HDSTSIWPMLK--LRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDASIGFWMALLVSAGILGQWPIG 256 (381)
T ss_pred --------CCCCCHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhH
Confidence 00112233333 55555444334444444555566788888774 99999999999988899999998888
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 566 SYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 566 ~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
++.||+++|+.+..+..+.+++++.+
T Consensus 257 -~l~dr~~~~~~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 257 -RLADRFGRLLVLRVQVFVVILGSIAM 282 (381)
T ss_pred -HHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777777665544
No 54
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=216.54 Aligned_cols=278 Identities=13% Similarity=0.127 Sum_probs=225.0
Q ss_pred HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc
Q 047440 276 MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR 354 (619)
Q Consensus 276 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~ 354 (619)
.+++.+..+.|++.+.+..|+++++++.|+++||+|-|+++..+.++. +++++...+.. .+++.+++.|+++|++.|.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-IGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHhHHHHhH
Confidence 357889999999999999999999999999999999999998777765 88888887733 5566889999999999998
Q ss_pred --hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhcc
Q 047440 355 --AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFK 432 (619)
Q Consensus 355 --~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~p 432 (619)
|+...+.+.|.|+++|++..++...+..+|.+++-+++|++.+.. .||++ +|++.++++++..++.+++..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~--~GW~s-----ifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS--LGWPS-----IFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC--CCCch-----HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999997762 26777 999999999999888888888
Q ss_pred CCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHH
Q 047440 433 EPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKV 512 (619)
Q Consensus 433 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (619)
|+|.+.+.- +..+.+.++.+.. ......+...|++.+.+ ++++|.
T Consensus 218 d~P~~h~~i--------s~~El~~I~~~k~-------------------------~~~~~~~~~vP~~~i~t--s~~vwa 262 (466)
T KOG2532|consen 218 DSPSKHPNI--------SEKELKYIEKGKS-------------------------EAHVKKKPPVPYKAILT--SPPVWA 262 (466)
T ss_pred CCcccCCCC--------CHHHHHHHHhccc-------------------------ccccCCCCCCCHHHHHc--CHHHHH
Confidence 888753320 0000000111100 00111115668888888 999999
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccch---------HHHHHHHHH
Q 047440 513 QLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFED---------RQILLASEI 583 (619)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~---------r~~l~~~~~ 583 (619)
+.+..++..++.+.+..+.|.|+.+.+|++..+.|++.++..+.+.+..++.| .++|++.+ |..-.++..
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g-~lsD~l~~~~ls~t~~rkifn~i~~~ 341 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAG-QLSDRLTFRILSETTVRKIFNTIAFG 341 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhccCchHhHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99998755 222235666
Q ss_pred HHHHHHHhhccccc
Q 047440 584 MVCIGILFSFHVFI 597 (619)
Q Consensus 584 ~~~i~~~~~~~~~~ 597 (619)
..+++++++.+.+.
T Consensus 342 ~~ai~l~~l~~~~~ 355 (466)
T KOG2532|consen 342 GPAVFLLVLAFTSD 355 (466)
T ss_pred HHHHHHHeeeecCC
Confidence 66676666666653
No 55
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.91 E-value=2.3e-22 Score=211.48 Aligned_cols=282 Identities=17% Similarity=0.210 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccch-----hhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATV-----CGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF- 323 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~- 323 (619)
....+++.++..++.+...+.+|.+.+++|.+..+ .|++.+++.++..++++++|+++||+|||++++.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 44555677777888888999999999999988654 489999999999999999999999999999888777655
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 324 IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 324 i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
++.+++.+. ++++.+++.|++.|++.+. +...+++.+++|+++|++++|+...+..+|.++||.+++.+.+..
T Consensus 96 ~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--- 169 (408)
T PRK09874 96 IVMVLMGLA---QNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY--- 169 (408)
T ss_pred HHHHHHHHH---hhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 777777777 8999999999999998766 777888999999999999999999999999999999999987654
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCC
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (619)
+|++ +|++.+++.++..++.++.+||++...++
T Consensus 170 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 202 (408)
T PRK09874 170 GLRP-----VFFITASVLFLCFLVTLFCIRENFQPVSK------------------------------------------ 202 (408)
T ss_pred CHHH-----HHHHHHHHHHHHHHHHHHHhccCcccccc------------------------------------------
Confidence 5666 78888777777666666777765431111
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhc-CcchHHHH-HHHHHHHHHHHHHhhchhhhhhhcccccch---hHHHHHHHhhhhH
Q 047440 483 DGSDETSEESHPPANSIRSAYRLL-TPSVKVQL-LIYFMLKYVMEILLSESSVVTTYYFGWSTG---AVAIFLACLGLTV 557 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~~~~~~~~~ 557 (619)
+.....++..+.+ +++.+... ...++..........+++.|..+..+.... ..+.+..+.+++.
T Consensus 203 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 271 (408)
T PRK09874 203 -----------KEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAA 271 (408)
T ss_pred -----------hhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 0000111222222 44443322 223333444445556677777665332221 2355556667777
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+++....+ ++.||+++|+.+..+.++.+++++.+...+
T Consensus 272 ~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T PRK09874 272 LLSAPRLG-KLGDRIGPEKILITALIFSVLLLIPMSFVQ 309 (408)
T ss_pred HHHHHHHH-HHHhccccchhHHHHHHHHHHHHHHHHHhc
Confidence 77777778 999999999998888777766665544433
No 56
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.91 E-value=2.2e-23 Score=227.67 Aligned_cols=306 Identities=11% Similarity=0.117 Sum_probs=216.2
Q ss_pred HHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 254 LANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
.+..+...+..+...+.++.+.++|+++..+.|++.+.+.++++++.++.|+++||+|||+++.+++++. ++.+++++.
T Consensus 39 ~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 3355556666788889999999999999999999999999999999999999999999999887777654 888887765
Q ss_pred hc------------------------------------------------cCcHHHHHHHHHHhhccCcc--hhhhhhhh
Q 047440 333 YD------------------------------------------------FSSIAVLLIGRLFCGFGSAR--AVNRRYIS 362 (619)
Q Consensus 333 ~~------------------------------------------------~~~~~~l~~~r~l~G~~~~~--~~~~~~i~ 362 (619)
.. ...+..++++|+++|+|.+. +...+++.
T Consensus 119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID 198 (633)
T ss_pred HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence 20 00256788999999999988 89999999
Q ss_pred ccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc-------------cceeccc-cchhHHHHHHHHHHHHHHHh
Q 047440 363 DCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI-------------YKLTFNQ-NTLPGWIMAVAWLFYLVWLC 428 (619)
Q Consensus 363 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~-------------~~w~w~~-~~~~~~~~~~~~~~~~~~~~ 428 (619)
|++|+++|+.++|++..+..+|.++|+++++++...+.. .+|||.+ |+..|++.+++.++..++.
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l- 277 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF- 277 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999998654321 1245542 5678888888777666554
Q ss_pred hhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc-C
Q 047440 429 ISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL-T 507 (619)
Q Consensus 429 ~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 507 (619)
+++|+..+....+. +.+ ..+.+...+. ..+.............+..++++ +
T Consensus 278 ~~~p~~lp~~~~~~-~~~--------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ll~n 329 (633)
T TIGR00805 278 FFFPKALPKEGKRV-NVD--------------------------VHETEKLEKS-EDKSRKKNSDITKDFPKIIKRLLCN 329 (633)
T ss_pred HhCccccCCccccc-chh--------------------------hhhhhccccc-ccccchhhhhhHHHHHHHHHHHHcC
Confidence 45565433111100 000 0000000000 00000000000111122233333 7
Q ss_pred cchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhh-HHHHHHHHHHhhhhccc--hHHHHHHHHHH
Q 047440 508 PSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLT-VLPVNIIVGSYISNMFE--DRQILLASEIM 584 (619)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~~~g~~l~d~~g--~r~~l~~~~~~ 584 (619)
|.++..++..++...+..++.+++|.|+++.+|+++.+++++.++..+. .+++.++.| +++||++ .|..+.+++++
T Consensus 330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G-~l~~r~~~~~~~~~~~~~~~ 408 (633)
T TIGR00805 330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGG-FIMKKFKLNVKKAAYFAICL 408 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhh-heeeeecccHHHHHHHHHHH
Confidence 7788888888888888999999999999999999999999998887764 455566655 9999987 45666666665
Q ss_pred HHHHH
Q 047440 585 VCIGI 589 (619)
Q Consensus 585 ~~i~~ 589 (619)
..+++
T Consensus 409 ~~~~~ 413 (633)
T TIGR00805 409 STLSY 413 (633)
T ss_pred HHHHH
Confidence 55554
No 57
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.91 E-value=2.4e-22 Score=213.31 Aligned_cols=283 Identities=13% Similarity=0.062 Sum_probs=197.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440 243 QKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL 322 (619)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~ 322 (619)
..+.|..+...++..+........+...+|.+.+++|.+.++.+++.+.+.++..++.+++|+++||+|||++++.+.+.
T Consensus 14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 93 (455)
T TIGR00892 14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLL 93 (455)
T ss_pred CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHH
Confidence 35566555555555444333334567778999999999999999999999999999999999999999999999888765
Q ss_pred H-HHHHHHHHhhccCcHHHHHH-HHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 323 F-IGNVMYALAYDFSSIAVLLI-GRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 323 ~-i~~~l~~~~~~~~~~~~l~~-~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
. ++.++++++ ++++.+++ .|++.|++.+. +...+++.++++ ++|++++|+...+..+|..++|++++++.+.
T Consensus 94 ~~~~~~~~~~~---~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~ 169 (455)
T TIGR00892 94 ASLGMILASFS---SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES 169 (455)
T ss_pred HHHHHHHHHHh---hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5 788888888 88988865 56899999876 666678889885 7899999999999999999999999998775
Q ss_pred ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCC
Q 047440 399 FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDG 478 (619)
Q Consensus 399 ~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (619)
+ +||| +|++.+++.++..+..++..|+.+.....+....+ + .+.
T Consensus 170 ~---gwr~-----~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------~-------------~~~-- 213 (455)
T TIGR00892 170 F---GWRG-----SFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKE-------------G-------------LPP-- 213 (455)
T ss_pred h---ChHH-----HHHHHHHHHHHHHHHHHHhCCCCcccccccccccc-------------c-------------CCC--
Confidence 5 6777 88888887666555544444432211100000000 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCcchH--HHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhh
Q 047440 479 DQEYDGSDETSEESHPPANSIR--SAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLT 556 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 556 (619)
. ....+.............. .+++ ++.++..+...++..++......++|.|..+ .|++..+++++.++.+++
T Consensus 214 ~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~ 288 (455)
T TIGR00892 214 D--GSTKKLSKKSTAEKINRFLDFSLFT--HRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFV 288 (455)
T ss_pred C--CccccccccchhhhhhhhcchHHhc--CchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 0 0000000000000000111 1222 6667766666666666666777788888877 599999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q 047440 557 VLPVNIIVGSYISNM 571 (619)
Q Consensus 557 ~~~~~~~~g~~l~d~ 571 (619)
.++++++.+ ++.||
T Consensus 289 ~~~~~~~~g-~l~d~ 302 (455)
T TIGR00892 289 DIFARPSCG-LIAGL 302 (455)
T ss_pred HHHHHHHHH-HHhcc
Confidence 999888888 89987
No 58
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.91 E-value=3.1e-22 Score=209.08 Aligned_cols=289 Identities=14% Similarity=0.116 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
+.+++...++.++...+..|.+|.+.+++|.+..+.|++.+.+.+++.+++++.|+++||+|||++++.++++. ++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 45556677777777888899999999999999999999999999999999999999999999999998888765 77766
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc-c-----
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF-K----- 400 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~-~----- 400 (619)
+..+...++++.+++.|++.|+|.|. +...+++.++.|+++|++.+++.+.+.++|..+||.+++.+.... +
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 54432226899999999999999988 888899999999999999999999999999999999999883221 0
Q ss_pred -----------------ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCC
Q 047440 401 -----------------IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQ 463 (619)
Q Consensus 401 -----------------~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (619)
..+|+| +|++.+++.++..++.. +.+.+..+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~-----~fl~~a~~~~~~~~~~~-~~~~p~~~~~~----------------------- 215 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQT-----PYMIIGAVVLAVALLIM-LTKMPALNHSD----------------------- 215 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HhcCCCCCccc-----------------------
Confidence 013555 88888776555444332 22221110000
Q ss_pred CcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcc-ccc
Q 047440 464 PLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYF-GWS 542 (619)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s 542 (619)
+ .........+...+ +|+++..++..++......+..++++.|..+.. +.+
T Consensus 216 --------------------~------~~~~~~~~~~~~~~--~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~ 267 (410)
T TIGR00885 216 --------------------A------KQISFSASLSRLAR--IRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMT 267 (410)
T ss_pred --------------------c------ccccchhhHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 00011112333444 667777777777766666677788888886532 334
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 543 TGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 543 ~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
....+...+....+..+++++.+ ++.||+++|+.+.+..++.++++++....+
T Consensus 268 ~~~a~~~~~~~~~~~~vGR~~~~-~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~ 320 (410)
T TIGR00885 268 AGFAANYNIGAMVIFFISRFIGT-WLISYLAAHKVLMAYAIIGMALCLGSIFAG 320 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44445455555566677888877 999999999988887777777766665544
No 59
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.91 E-value=2.7e-22 Score=216.47 Aligned_cols=302 Identities=16% Similarity=0.202 Sum_probs=210.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+|+.+..++++.++..++.....+.+|.+.+++|.+..+.+++.+++.+++.+++++.|+++||+|||++++.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45667777888888888889999999999999999999999999999999999999999999999999999988887655
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.++++++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++...+..+|.+++|.+++++...+
T Consensus 96 ~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~- 171 (496)
T PRK03893 96 SVGTLACGFA---PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW- 171 (496)
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 888888888 8999999999999999877 788899999999999999999999999999999999999987654
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
+|+| .|++.++. ++..++....+|++++....+.. .....+....
T Consensus 172 --~w~~-----~f~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~-------~~~~~~~~~~-------------------- 216 (496)
T PRK03893 172 --GWRA-----LFFIGILP-IIFALWLRKNLPEAEDWKEKHAG-------KAPVRTMVDI-------------------- 216 (496)
T ss_pred --CHHH-----HHHHHHHH-HHHHHHHHHhCCCchhhhhhccc-------cccchhHHHH--------------------
Confidence 6777 56554333 33333333445655432111000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCcchH---------HHHHhc----------------------------CcchHHHHHHHHHHHH-
Q 047440 481 EYDGSDETSEESHPPANSIR---------SAYRLL----------------------------TPSVKVQLLIYFMLKY- 522 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~----------------------------~~~~~~~~~~~~~~~~- 522 (619)
............. ...... +.+....+....+..+
T Consensus 217 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (496)
T PRK03893 217 -------LYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFL 289 (496)
T ss_pred -------HhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 0000000000000 000000 0000000000001111
Q ss_pred HHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 523 VMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 523 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
.......++|.|+.+.+|++..+++.+.+..+++.+++.++.| +++||+|+|+.+..+.++.+++.+++
T Consensus 290 ~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~ 358 (496)
T PRK03893 290 YSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG-FLGDWLGTRKAYVCSLLISQLLIIPV 358 (496)
T ss_pred ccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 1112345678899877899999999999999999999999988 99999999998887766655554433
No 60
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.91 E-value=5.9e-23 Score=220.64 Aligned_cols=310 Identities=17% Similarity=0.183 Sum_probs=205.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHh--------CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSL--------GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPL 315 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~ 315 (619)
+.+.+.+++..++.+..+++...+.+..|.+.+.+ +.+..+.|++.+++.++.+++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566667777788888888888898889888877 8889999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhh---------ccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHH
Q 047440 316 VFSSIVLF-IGNVMYALAY---------DFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASAL 383 (619)
Q Consensus 316 ~~~~~~~~-i~~~l~~~~~---------~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 383 (619)
++.+.++. ++.++++++. ..+.++.++++|+++|++.|. +...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 98877665 6666665420 113356788999999999988 88999999999999999999999999999
Q ss_pred HhHHHHHHhhhhhcc-----ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhh
Q 047440 384 GMACGPALAGLLQTN-----FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALE 458 (619)
Q Consensus 384 G~~~g~~i~~~l~~~-----~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (619)
|.++++++++.+... ...++||| +|++.+++.++.. +..+++||+|+....+.+.++. .....
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~-----~f~~~~~~~~~~~-~~~~~l~~s~~~l~~~~~~~~~------~~~~~ 235 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRY-----MFASEAIPALLFL-MLLYFVPETPRYLMSRGKQEQA------EGILR 235 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHH-----HHHHHHHHHHHHH-HHHHcCCCCcHHHHHcCCHHHH------HHHHH
Confidence 999998887766321 12246777 7887777766554 4456789988643211000000 00000
Q ss_pred hcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHH--------HhcCcchHHHHH---HHHHH-HHHHHH
Q 047440 459 KGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAY--------RLLTPSVKVQLL---IYFML-KYVMEI 526 (619)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~-~~~~~~ 526 (619)
.. ... .+ ........+... ..+......... ...+. ......
T Consensus 236 ~~-~~~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (479)
T PRK10077 236 KI-MGN---------TL----------------ATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINV 289 (479)
T ss_pred HH-cCC---------hh----------------HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhH
Confidence 00 000 00 000000000000 000000000110 11111 111122
Q ss_pred HhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 527 LLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 527 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
...+.|.+..+ .|++....++.....+++.+++.++.+ +++||+|+|+++..+.++++++++++.
T Consensus 290 ~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~g~r~~~i~~~~~~~v~~~~l~ 354 (479)
T PRK10077 290 VLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAI-MTVDKFGRKPLQIIGALGMAIGMFSLG 354 (479)
T ss_pred HHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHH-HHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence 23334555444 588877777777778888888888888 999999999999998888888776554
No 61
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.91 E-value=5.7e-23 Score=220.51 Aligned_cols=318 Identities=16% Similarity=0.205 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHhCCc--------cchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSLGAA--------ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL 322 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~ 322 (619)
+++.++.++..++.....+.+|.+..+++.+ ..+.|++.+++.++..++++++|+++||+|||++++.+.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~ 110 (481)
T TIGR00879 31 LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALL 110 (481)
T ss_pred HHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHH
Confidence 3344455566667777888888888887776 89999999999999999999999999999999998877765
Q ss_pred H-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHh---hhhh
Q 047440 323 F-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA---GLLQ 396 (619)
Q Consensus 323 ~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~---~~l~ 396 (619)
. ++.+++.+.....+++.++++|++.|++.+. +...++++|++|+++|++++++.+++..+|.++||+++ +.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 190 (481)
T TIGR00879 111 FVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190 (481)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5 7777775542235667899999999999888 78889999999999999999999999999999999998 5443
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCc
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDE 476 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (619)
... +||| +|++.++. .+..++..+++||+|+....+..... ..+......... ..+.
T Consensus 191 ~~~---~w~~-----~f~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------~~~~ 247 (481)
T TIGR00879 191 NTL---GWRI-----PLGLQLIP-AGLLFLGLFFLPESPRWLVGKGRVEE------ARKSLARLRGTS--------GEDK 247 (481)
T ss_pred CCc---cHHH-----HHHHHHHH-HHHHHHHHhcCCCChHHHHHcCChHH------HHHHHHHHhCCC--------CCcH
Confidence 333 6777 77775554 44444555677888753221000000 000000000000 0000
Q ss_pred CCCCCCCC-CCCCCCCCCCCCcchHHHHHhcC---cchHHHHHHHHHHHHH-HHHHhhchhhhhhhcccccchhHHHHHH
Q 047440 477 DGDQEYDG-SDETSEESHPPANSIRSAYRLLT---PSVKVQLLIYFMLKYV-MEILLSESSVVTTYYFGWSTGAVAIFLA 551 (619)
Q Consensus 477 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 551 (619)
+....... ..............+...++..+ ++.+....+.++.... ......+.|.+.. .+|++....+....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 326 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSI 326 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHH
Confidence 00000000 00000000000111333333221 2222222222222222 2223334444444 45999988888888
Q ss_pred HhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 552 CLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 552 ~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
+.+++.+++.++.+ ++.||+++|+.+.+++++++++++++.
T Consensus 327 ~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
T TIGR00879 327 IVGAVNFAFTFVAI-FLVDRFGRRPLLLIGAAGMAICLFVLG 367 (481)
T ss_pred HHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 88889999998888 999999999998888777777765554
No 62
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.91 E-value=3.5e-22 Score=208.61 Aligned_cols=279 Identities=15% Similarity=0.163 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
.+++...++...+.+...|.+|.+. +++|.++.++|++.+++.++..+.++++|+++||+|||+++..+.+.. ++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3444666667777778888888765 579999999999999999999999999999999999999998888765 78888
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
+.+. ++++.++++|++.|++.+. +...+++.+++|+++|++++|+......+|..+||++++++. .+ +|+|
T Consensus 93 ~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~---g~~~ 165 (400)
T PRK11646 93 MAIA---HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY---DFRL 165 (400)
T ss_pred HHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hHHH
Confidence 8887 8999999999999999876 778899999999999999999999999999999999999997 33 6666
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCC
Q 047440 407 NQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSD 486 (619)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (619)
+|++.+++.++..++..+..|+.+.....
T Consensus 166 -----~f~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------------------------------------- 194 (400)
T PRK11646 166 -----VCATGAVLFVLAAAFNAWLLPAYKLSTVR---------------------------------------------- 194 (400)
T ss_pred -----HHHHHHHHHHHHHHHHHHhCCcccccccc----------------------------------------------
Confidence 78887777666555555555542110000
Q ss_pred CCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHH
Q 047440 487 ETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGS 566 (619)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 566 (619)
.+....++...+ +++++...+..+...........+.|.|.++..+ ++.+.+.++++.+++...+....++
T Consensus 195 ------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~ 265 (400)
T PRK11646 195 ------TPVREGMTRVLR--DKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIAR 265 (400)
T ss_pred ------hhhHHHHHHHHc--CchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112333333 5665554444444333333445567888887644 7788888888877777766666663
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 567 YISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 567 ~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+..||++.++.+..++++.+++.+++...+
T Consensus 266 ~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (400)
T PRK11646 266 WSEKRFRLEHRLMAGLLIMSLSMFPIGMVS 295 (400)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 445567766666677777777665554443
No 63
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.90 E-value=3.5e-22 Score=211.54 Aligned_cols=287 Identities=12% Similarity=0.064 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IG 325 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~ 325 (619)
+..++...+................|.+. ++|+++.+.|++.+++.++..+++++.|+++||+|||++++.+.++. ++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 33444444444454444444555566555 46999999999999999999999999999999999999887776654 66
Q ss_pred HHHHHHhhc-cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 326 NVMYALAYD-FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 326 ~~l~~~~~~-~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
.+++++... ..+++.+++.|++.|++.|. +....++.|++|+++|++++|+.+++..+|..++|.+.+.+.....
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-- 182 (438)
T TIGR00712 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN-- 182 (438)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh--
Confidence 665554311 14677888999999999877 7778889999999999999999999999999999888776533222
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCC
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (619)
+|++ .|++.+++.++..++.++++||+|+....+.. +. .+.+...+
T Consensus 183 ~w~~-----~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~-----------------~~~~~~~~- 228 (438)
T TIGR00712 183 DWHA-----ALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-----------EE-----------------YRNDYPDD- 228 (438)
T ss_pred hhHH-----HHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-----------hh-----------------cccccccc-
Confidence 6666 88888888777777777788887653211000 00 00000000
Q ss_pred CCCCCCCCCCCCCCcchH-HHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHH
Q 047440 483 DGSDETSEESHPPANSIR-SAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVN 561 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 561 (619)
..++ .+.....+..+. ... .++.++...+..++.....+++.++.|.|+++..|+++.++++...+.+++++++.
T Consensus 229 -~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~ 304 (438)
T TIGR00712 229 -YNEK-AEQELTAKEIFMQYVL--PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT 304 (438)
T ss_pred -cccc-cccccchHHHHHHHHc--cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHH
Confidence 0000 000000011111 112 25666666666666666667788899999998889999999999999899999999
Q ss_pred HHHHHhhhhccchH
Q 047440 562 IIVGSYISNMFEDR 575 (619)
Q Consensus 562 ~~~g~~l~d~~g~r 575 (619)
++.+ ++.||++++
T Consensus 305 ~~~g-~l~dr~~~~ 317 (438)
T TIGR00712 305 LLCG-WMSDKVFKG 317 (438)
T ss_pred HHHH-HHHHHhccC
Confidence 9888 999999643
No 64
>PRK10054 putative transporter; Provisional
Probab=99.90 E-value=3.4e-22 Score=208.41 Aligned_cols=279 Identities=16% Similarity=0.185 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
+..+.++.++...+.+...|.+|.+.. ++|.+..++|++.+++.++..+++++.|+++||+|||++++.+.+.. ++.+
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 445556777777788888898888775 68999999999999999999999999999999999999888777655 7777
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccccee
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLT 405 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~ 405 (619)
++++. ++++.++++|++.|.+.+. +...++++|.+|+++|++++|+.....++|.++||++++++.. . +|+
T Consensus 89 ~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~---g~~ 161 (395)
T PRK10054 89 AIPLV---NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q---SIN 161 (395)
T ss_pred HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---ccC
Confidence 78888 8899999899888876555 7788999999999999999999999999999999999998863 3 555
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCC
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGS 485 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (619)
+ +|++.+++.++..++..+.+|+++++.+. +
T Consensus 162 ~-----~f~~~~~~~~i~~i~~~~~~~~~~~~~~~-------------------------------------------~- 192 (395)
T PRK10054 162 L-----PFWLAAICSAFPLVFIQIWVQRSEKAIAT-------------------------------------------E- 192 (395)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHhcccccccc-------------------------------------------c-
Confidence 5 88887777666655555556654321110 0
Q ss_pred CCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhc--ccccchhHHHHHHHhhhhHHHHHHH
Q 047440 486 DETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYY--FGWSTGAVAIFLACLGLTVLPVNII 563 (619)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~ 563 (619)
. +.....+..++ +++++...+..++..+....+..+.+.|.... .+.+....+..+...++..+.....
T Consensus 193 -~------~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 263 (395)
T PRK10054 193 -T------GSVWSPSVLLQ--DKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYS 263 (395)
T ss_pred -h------hhhhhhhhhcc--CceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhH
Confidence 0 00001122222 67777777777776666655555666665432 3555666788888777777777777
Q ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhhcc
Q 047440 564 VGSYISNMFEDRQILLASEIMVCIGILFSFH 594 (619)
Q Consensus 564 ~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~ 594 (619)
.+ ++.||.++|+.+..++++.+++++.+..
T Consensus 264 ~g-~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 293 (395)
T PRK10054 264 VG-RRLNAANIRPLMTAGTLCFVIGLVGFIF 293 (395)
T ss_pred HH-HHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 78 8999999999988888777777765543
No 65
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.90 E-value=3.3e-22 Score=205.98 Aligned_cols=266 Identities=14% Similarity=0.103 Sum_probs=196.0
Q ss_pred hhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHH
Q 047440 262 VNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAV 340 (619)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~ 340 (619)
.......|.+|.+.+++|.+.++.|++.+++.++..+++++.|+++||+|||+++..+.+.. ++.+++ .+ ++++.
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~---~~~~~ 89 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA---PGTAL 89 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh---ccHHH
Confidence 34466789999999999999999999999999999999999999999999999988877655 666655 56 88999
Q ss_pred HHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHH
Q 047440 341 LLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAV 418 (619)
Q Consensus 341 l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~ 418 (619)
+++.|++.|++.+. +....++.+++| ++|++++++++.+..+|..+|+.+++.+.+..+ ++|++ .|.+.++
T Consensus 90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~-----~f~~~~~ 162 (355)
T TIGR00896 90 LFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQ-----ALAWWAL 162 (355)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHH-----HHHHHHH
Confidence 99999999999887 667778888886 689999999999999999999999998865432 13555 5655544
Q ss_pred HHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcc
Q 047440 419 AWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANS 498 (619)
Q Consensus 419 ~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (619)
+.++.. ...+|+.+++... +. . .....
T Consensus 163 ~~~~~~---~~~~~~~~~~~~~-------------------------------------------~~-~------~~~~~ 189 (355)
T TIGR00896 163 PALLAL---LAWIPQVRRRVAA-------------------------------------------NQ-T------TTRLT 189 (355)
T ss_pred HHHHHH---HHHhhhhccccCC-------------------------------------------CC-C------CCCCC
Confidence 433222 2233443221100 00 0 00001
Q ss_pred hHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhcc-chHHH
Q 047440 499 IRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMF-EDRQI 577 (619)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~-g~r~~ 577 (619)
.++.++ ++.++...+..++..........++|.|+++ .|++..+.+...++.+++.++++++.+ ++.||+ ++|..
T Consensus 190 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g-~l~dr~~~~~~~ 265 (355)
T TIGR00896 190 PVRIWR--SPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIP-ALARRVKDQRGI 265 (355)
T ss_pred Cchhhc--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHH-HHHhhhccchHH
Confidence 122222 4555555555556666667777888999887 599999999999999999999999999 999999 45666
Q ss_pred HHHHHHHHHHHHHhhccc
Q 047440 578 LLASEIMVCIGILFSFHV 595 (619)
Q Consensus 578 l~~~~~~~~i~~~~~~~~ 595 (619)
+.++.++++++.+++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (355)
T TIGR00896 266 VAVLAVLQLVGLCGLLFA 283 (355)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 667777776666555443
No 66
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.90 E-value=8.7e-22 Score=204.70 Aligned_cols=278 Identities=14% Similarity=0.083 Sum_probs=205.3
Q ss_pred HHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-H-HH-HHHHH
Q 047440 253 NLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-L-FI-GNVMY 329 (619)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~-~i-~~~l~ 329 (619)
+.+..+...++.++..|.+|.+.+++|.|..++|++.+++.++..++++++|+++||+||+......+. . .+ ...++
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~ 88 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 445566666778899999999999999999999999999999999999999999999998653321111 1 11 22233
Q ss_pred HHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecc
Q 047440 330 ALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFN 407 (619)
Q Consensus 330 ~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~ 407 (619)
..+ ++++.+++.|++.|.+.+. |...+++.++ .++|++++|....+.++|.++||++++++.+.+ +|++
T Consensus 89 ~~~---~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~---g~~~- 159 (382)
T TIGR00902 89 AGA---HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF---DEQN- 159 (382)
T ss_pred Hhh---hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc---ChhH-
Confidence 455 8899999999999887665 7777776554 578899999999999999999999999998765 6666
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCC
Q 047440 408 QNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDE 487 (619)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (619)
.|++.+++ .+..++. +.+++++++..+ .. +
T Consensus 160 ----~f~~~~~~-~~~~~~~-~~~~~~~~~~~~-------------------------------------------~~-~ 189 (382)
T TIGR00902 160 ----ILAILTAG-LAFMLIG-FLIKPTIPPKDA-------------------------------------------IP-E 189 (382)
T ss_pred ----HHHHHHHH-HHHHHHH-HHcCCCCCCCcc-------------------------------------------cc-c
Confidence 66665544 2222222 233333211110 00 0
Q ss_pred CCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHh
Q 047440 488 TSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSY 567 (619)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~ 567 (619)
.........+++.+ +|+++...+..++...+...+.++.|+|+++ .|++...+|.++++..++.+++..+.+ +
T Consensus 190 ---~~~~~~~~~~~~l~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~-~ 262 (382)
T TIGR00902 190 ---DESQGDSAFIALLK--NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSN-K 262 (382)
T ss_pred ---cccccchhHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhH-H
Confidence 00011112344444 7778888888888888888888899999987 699999999999988888888877777 9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 568 ISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 568 l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+.||+|.|+++.++.++.++..+++...+
T Consensus 263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~ 291 (382)
T TIGR00902 263 LFQNCSARDLLLISAIACVGRWAIIGAIE 291 (382)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999988887766554
No 67
>PRK12382 putative transporter; Provisional
Probab=99.90 E-value=8e-22 Score=206.06 Aligned_cols=276 Identities=18% Similarity=0.202 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGN 326 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~ 326 (619)
.++...++.++..++.++..|.+|.+. +++|.|..++|++.+++.+++.++++++|+++||+|||++++.+.+.. ++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG 95 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 444555666777778888999999865 679999999999999999999999999999999999999988776644 443
Q ss_pred HHHH---Hhh--ccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 327 VMYA---LAY--DFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 327 ~l~~---~~~--~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
+.+. ... ...+++.++++|+++|++.+. +...+++.+++|+++|++++|+.+.+..+|.++||++++++...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (392)
T PRK12382 96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF 175 (392)
T ss_pred HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3222 110 115788999999999999887 777889999999999999999999999999999999999987654
Q ss_pred cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCC
Q 047440 400 KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGD 479 (619)
Q Consensus 400 ~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (619)
+|++ .+++..++.++.. .+.++.|+.+..
T Consensus 176 ---g~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~--------------------------------------- 204 (392)
T PRK12382 176 ---GFAA-----LALTTMVLPLLAW----AFNGTVRKVPAH--------------------------------------- 204 (392)
T ss_pred ---ChHH-----HHHHHHHHHHHHH----HHHHhccCCCCC---------------------------------------
Confidence 5555 4444333322211 122221110000
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHH
Q 047440 480 QEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLP 559 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 559 (619)
+ +.+.+.++..+. ++...+..++..........+.+.|+.+. |++ ..++.....+++.++
T Consensus 205 ----~---------~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 264 (392)
T PRK12382 205 ----A---------GERPSLWSVVGL----IWKPGLGLALQGVGFAVIGTFVSLYFASK-GWA--MAGFTLTAFGGAFVL 264 (392)
T ss_pred ----c---------ccCchHHHHHHH----HHHhHHHHHHHHHHHhHHHHHHHHHHHhc-CCc--hhHHHHHHHHHHHHH
Confidence 0 000012222211 11111122223333444555666777654 654 355666667777778
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 560 VNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 560 ~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+.++.+ ++.||+|+|+.+..+..+.+++++++...+
T Consensus 265 ~~~~~g-~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (392)
T PRK12382 265 MRVLFG-WMPDRFGGVKVAIVSLLVETVGLLLLWLAP 300 (392)
T ss_pred HHHHHH-HHHHhcCCCeehHHHHHHHHHHHHHHHHcc
Confidence 888888 999999999988888877777776654443
No 68
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.89 E-value=5.2e-22 Score=209.16 Aligned_cols=284 Identities=13% Similarity=0.079 Sum_probs=202.8
Q ss_pred HHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH
Q 047440 253 NLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL 331 (619)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~ 331 (619)
.+...++..++..+..+.+|.+.++++.++.+.|++.+.+.++.++++++.|+++||+|||+++..+.+.. ++.++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 101 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHH
Confidence 33445666667778888899999999999999999999999999999999999999999999886665443 44433322
Q ss_pred h--hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecc
Q 047440 332 A--YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFN 407 (619)
Q Consensus 332 ~--~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~ 407 (619)
. ...++++.+++.|++.|++.+. +...+++.+++|+++|+++.++...+.++|.++||.+++++.... +|+|
T Consensus 102 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~---~~~~- 177 (417)
T PRK10489 102 NAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG---GVAW- 177 (417)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---hhHH-
Confidence 1 0126789999999999998776 777889999999999999999999999999999999999987654 6666
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCC
Q 047440 408 QNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDE 487 (619)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (619)
.+++.++..++..+ ..+.+|++++.... .
T Consensus 178 ----~~~~~~~~~~~~~~-~~~~l~~~~~~~~~----------------------------------------------~ 206 (417)
T PRK10489 178 ----NYGLAAAGTFITLL-PLLRLPALPPPPQP----------------------------------------------R 206 (417)
T ss_pred ----HHHHHHHHHHHHHH-HHHhCCCCCCCCcc----------------------------------------------c
Confidence 56666555444433 34455654321110 0
Q ss_pred CCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHh
Q 047440 488 TSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSY 567 (619)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~ 567 (619)
..........++..++ ++.++...+..++.. ...+...++|.|..+.+|+++...|++.+..+++.+++.++.+ +
T Consensus 207 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~-~ 281 (417)
T PRK10489 207 -EHPLRSLLAGFRFLLA--SPVVGGIALLGGLLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSG-W 281 (417)
T ss_pred -ccchHHHHHHHHHHHc--ChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHH-H
Confidence 0000000011222222 444444443333322 2345666789999987899999999999999999999998888 9
Q ss_pred hhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 568 ISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 568 l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+.||.++++.+..+.++.+++++++...+
T Consensus 282 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (417)
T PRK10489 282 LAHSARPGLLMLLSTLGSFLAVGLFGLMP 310 (417)
T ss_pred hhhccCcchHHHHHHHHHHHHHHHHHccc
Confidence 99988777777777777777766554443
No 69
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.89 E-value=1.9e-21 Score=202.32 Aligned_cols=288 Identities=14% Similarity=0.085 Sum_probs=205.9
Q ss_pred HHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchh----HHHHHHHHHHHHHHHHHh
Q 047440 257 TFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKP----LVFSSIVLFIGNVMYALA 332 (619)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~----~~~~~~~~~i~~~l~~~~ 332 (619)
.+....+.++..|.+|.+.+++|.|..++|++.+++.++..++++++|+++||+||+. .+..+.+. .+...+...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~~~ 91 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL-FAVAFWFGA 91 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH-HHHHHHHhc
Confidence 4555567789999999999999999999999999999999999999999999999843 22211111 122223334
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccc
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNT 410 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~ 410 (619)
+++|.+++.|++.|++.+. +...+++.++ .++|+++++....+.++|.++||++++++.+.+ +|+.
T Consensus 92 ---~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~---g~~~---- 159 (382)
T PRK11128 92 ---HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF---GEQA---- 159 (382)
T ss_pred ---ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc---ChhH----
Confidence 7899999999999998766 7777777766 456889999999999999999999999998766 5555
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCC
Q 047440 411 LPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSE 490 (619)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (619)
+|++.++..++.. +..+..||+++..+. . +
T Consensus 160 -~f~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------------------------------~-~--- 189 (382)
T PRK11128 160 -ILWILTAGVASML-LGQLLRPTIMPQGES--------------------------------------------R-Q--- 189 (382)
T ss_pred -HHHHHHHHHHHHH-HHHHccCCCCCcccc--------------------------------------------c-c---
Confidence 7777665444333 333344443211000 0 0
Q ss_pred CCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhh
Q 047440 491 ESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISN 570 (619)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d 570 (619)
...+...+++++++ +++++..++..++..........+.|.|..+ .|++..+.|.+.++..++.++...+.+ ++.|
T Consensus 190 ~~~~~~~~~~~i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~~ 265 (382)
T PRK11128 190 QESAGWPAWKALLK--EPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSN-RLFR 265 (382)
T ss_pred ccccccchHHHHHc--ChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 00011224455554 6777777777777777766677778888876 599999999999988888888888888 9999
Q ss_pred ccchHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhhc
Q 047440 571 MFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVF 614 (619)
Q Consensus 571 ~~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~g 614 (619)
|+++++.+..+.++.+++.+++...+ +.+.+++..++.+++
T Consensus 266 r~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 266 RWSARDLLLLSAICGVVRWGLMGSTT---ALPWLIVIQILHCGT 306 (382)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHH
Confidence 99999998888888888776655444 444444444444443
No 70
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.1e-22 Score=212.03 Aligned_cols=283 Identities=15% Similarity=0.079 Sum_probs=212.5
Q ss_pred hhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHH-HHHHHHHHHHHHhhccCcHHHHHHH
Q 047440 266 IIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSS-IVLFIGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 266 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~-~~~~i~~~l~~~~~~~~~~~~l~~~ 344 (619)
+..+.+..+.+|.+....+.|.+.+++.++++++.+++|.+.||++-.+.+... +++++..++.... .|++.+++.
T Consensus 64 i~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~---~s~~~~ial 140 (495)
T KOG2533|consen 64 IVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV---HSFPGLIAL 140 (495)
T ss_pred chhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHH
Confidence 344444445578889999999999999999999999999999999966665444 4455555555556 999999999
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc---cccccceeccccchhHHHHHHH
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT---NFKIYKLTFNQNTLPGWIMAVA 419 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~---~~~~~~w~w~~~~~~~~~~~~~ 419 (619)
|++.|+..+. |....+++.|+.+++|+..+|++.++.++|.++|++++..+.. ..+..|||| .|++.+++
T Consensus 141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~-----~FiI~G~i 215 (495)
T KOG2533|consen 141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRW-----LFIIEGVI 215 (495)
T ss_pred HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCcee-----ehhHHHHH
Confidence 9999999888 9999999999999999999999999999999999999998622 223348999 89999999
Q ss_pred HHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcch
Q 047440 420 WLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSI 499 (619)
Q Consensus 420 ~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (619)
.++..+++++++|+.|....-..+. + .....++.+ +........+.....+
T Consensus 216 ~~~~gi~~f~~lp~~P~~~~fl~~~-e---k~~~~~~~~-------------------------~~~~~~~~~~~~~~~~ 266 (495)
T KOG2533|consen 216 TLVLGIVVFFFLPDNPSKAWFLTDE-E---KELVVERLR-------------------------ESPSGGIENKFKWKGF 266 (495)
T ss_pred HHHHHheEEEEecCChhhccccchH-H---HHHHHHHHH-------------------------hccCCCcccccCHHHH
Confidence 9999999999999999743210000 0 000000000 0000000011222233
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhc----cchH
Q 047440 500 RSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNM----FEDR 575 (619)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~----~g~r 575 (619)
++.++ .+.+|...+..++.....+++.+++|.|+.+..|++..+++.+.....++++++.++.| +++|| ..+|
T Consensus 267 ~~a~~--dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag-~lsdr~~~~~~~~ 343 (495)
T KOG2533|consen 267 KEALK--DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAG-YLSDRLKTIFARR 343 (495)
T ss_pred HHHHh--chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHH-HHHHHHhhhHHHH
Confidence 34443 89999999999999999999999999999996689999999999999999999999999 99999 4555
Q ss_pred HHHHHHH-HHHHHH
Q 047440 576 QILLASE-IMVCIG 588 (619)
Q Consensus 576 ~~l~~~~-~~~~i~ 588 (619)
.....++ +...++
T Consensus 344 ~~~~~~~~~~~~~g 357 (495)
T KOG2533|consen 344 LLFIVFLCLYAIIG 357 (495)
T ss_pred HHHHHHHHHHHHHH
Confidence 5444443 334444
No 71
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.89 E-value=2.3e-21 Score=199.00 Aligned_cols=256 Identities=23% Similarity=0.365 Sum_probs=219.1
Q ss_pred HHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH
Q 047440 253 NLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL 331 (619)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~ 331 (619)
..+..+...++.....+..|.+.+++|.+..+.+++.++..++..++++++|+++||+|||+.+..+.+.. ++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 44566677778888999999999999999999999999999999999999999999999999888777765 88888888
Q ss_pred hhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecccc
Q 047440 332 AYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQN 409 (619)
Q Consensus 332 ~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~ 409 (619)
. ++++.++++|++.|++.+. +...+++.|++|+++|++++++...+..+|..+||.+++.+.+.. +|++
T Consensus 84 ~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~--- 154 (352)
T cd06174 84 A---SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---GWRW--- 154 (352)
T ss_pred h---ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---hHHH---
Confidence 8 8999999999999999888 888999999999999999999999999999999999999997654 4666
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCC
Q 047440 410 TLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETS 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (619)
++++.+++.++..++..+. +
T Consensus 155 --~~~~~~~~~~~~~~~~~~~-~--------------------------------------------------------- 174 (352)
T cd06174 155 --LFLILAILGLLLALLLLFL-L--------------------------------------------------------- 174 (352)
T ss_pred --HHHHHHHHHHHHHHHHHHH-H---------------------------------------------------------
Confidence 7777777666555554333 2
Q ss_pred CCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhh
Q 047440 490 EESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYIS 569 (619)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~ 569 (619)
|.++...+..++..........+.|.+..+.+|++..+.+......+++.+++..+.+ ++.
T Consensus 175 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 235 (352)
T cd06174 175 ------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGG-LLS 235 (352)
T ss_pred ------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 2345566677777777888888899999888899999999999999999999999999 999
Q ss_pred hccchHH-HHHHHHHHHHHHHHhhcccc
Q 047440 570 NMFEDRQ-ILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 570 d~~g~r~-~l~~~~~~~~i~~~~~~~~~ 596 (619)
||+++|+ .+..+.++..++.+++...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 236 DRLGRRRLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999 88888888888877666554
No 72
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.88 E-value=1.7e-21 Score=200.76 Aligned_cols=271 Identities=15% Similarity=0.060 Sum_probs=193.7
Q ss_pred hHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcccc-----CchhHH-HHHHHHH-HHHHHHHHhhccC
Q 047440 264 TYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS-----YFKPLV-FSSIVLF-IGNVMYALAYDFS 336 (619)
Q Consensus 264 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----Grr~~~-~~~~~~~-i~~~l~~~~~~~~ 336 (619)
.....+.+|.+.+++|+|.+++|++.++ .+...+ .+++|+++||+ |||+.+ +.+.+.. ++.++.++..+..
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 4567788999999999999999999755 455554 89999999997 888864 4555444 5555555553335
Q ss_pred cHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc-----ccceecccc
Q 047440 337 SIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK-----IYKLTFNQN 409 (619)
Q Consensus 337 ~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~-----~~~w~w~~~ 409 (619)
+++.+.+..++.|++.+. ++..++++|++|+++|+++.|+...+..+|.++|+.+++.+....+ .|+||+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~--- 158 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY--- 158 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH---
Confidence 667777777788877666 8889999999999999999999999999999999999998865543 122655
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCC
Q 047440 410 TLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETS 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (619)
+|++.+++.++..++.++..||+.+.... . + .
T Consensus 159 --~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-------------------------------------------~--~-~ 190 (356)
T TIGR00901 159 --IFFWTALLILPGLLVTLFLAKEPQEDASV-------------------------------------------P--K-P 190 (356)
T ss_pred --HHHHHHHHHHHHHHHHHHhccCCCccccc-------------------------------------------c--h-h
Confidence 88888877666555555555664321100 0 0 0
Q ss_pred CCCCCCCcchHHHHHhcCcc---hHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhh-hHHHHHHHHH
Q 047440 490 EESHPPANSIRSAYRLLTPS---VKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGL-TVLPVNIIVG 565 (619)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~~g 565 (619)
........++.+++ ++. ++...+..++..++......+.|+|+.+ +|++..+.+.+..+.+. +.+++.++.+
T Consensus 191 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g 266 (356)
T TIGR00901 191 -LTQAVLKPIREFFQ--RKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGG 266 (356)
T ss_pred -HHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00001123333333 343 6666666667777777888889999988 79999999988887774 4556666666
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 566 SYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 566 ~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
++.||+|+|+.+..++++.+++..++
T Consensus 267 -~l~~r~g~~~~l~~~~~~~~~~~~~~ 292 (356)
T TIGR00901 267 -IIMQPLNILYALLLFGIVQALTNAGF 292 (356)
T ss_pred -HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777776665543
No 73
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.88 E-value=4.1e-21 Score=228.30 Aligned_cols=293 Identities=10% Similarity=0.054 Sum_probs=198.8
Q ss_pred HHHHHHHHhhh-HhhccChHHHHHHhCCc--cchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH
Q 047440 254 LANTFLYMVNT-YIIVPTADDYSMSLGAA--ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMY 329 (619)
Q Consensus 254 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~s--~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~ 329 (619)
+++.++..++. .....+.+.+..+++.+ ....+++.+++.++++++++++|+++||+|||++++.+.++. ++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~ 94 (1146)
T PRK08633 15 LLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLI 94 (1146)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34444433332 33334444455566654 345799999999999999999999999999999988776543 333333
Q ss_pred HHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc------c
Q 047440 330 ALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK------I 401 (619)
Q Consensus 330 ~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~------~ 401 (619)
.++...++++.++++|++.|++.+. ++..++++|++|+++|++++|+..++..+|.++||++++++....+ .
T Consensus 95 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~ 174 (1146)
T PRK08633 95 VLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEI 174 (1146)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 3221127899999999999999888 8889999999999999999999999999999999999999965410 0
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
++|.| .+.+.++...+..++..+.+|+.+......
T Consensus 175 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 209 (1146)
T PRK08633 175 LGRIA-----PAGLVLLAVAVLGLIFAYRLPKVPAAAPEV---------------------------------------- 209 (1146)
T ss_pred ccchH-----HHHHHHHHHHHHHHHHHhcCcCCCCCCccc----------------------------------------
Confidence 12333 233333333333344445567665422110
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccch-hHHHHHHHhhhhHHHH
Q 047440 482 YDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTG-AVAIFLACLGLTVLPV 560 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~ 560 (619)
...............++.+++ ++.++..++..++..+....+..++|.|+.+.+|++.. ..|+++++.+++.+++
T Consensus 210 --~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g 285 (1146)
T PRK08633 210 --FDKKKYLFPKLLWRNLKLLRS--DRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIG 285 (1146)
T ss_pred --ccccccccHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 000000000000112222222 45566666666666666677778889999988899998 9999999999999999
Q ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 561 NIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 561 ~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
.++.+ ++.||+++++.+.++.++++++++++....
T Consensus 286 ~~~~g-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 286 SLLAG-RLSGRHIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHHHH-HHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence 99988 999999998888877777777666655443
No 74
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.88 E-value=1.1e-20 Score=197.24 Aligned_cols=272 Identities=15% Similarity=0.141 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHH-HHHHHhhhhhhhccccCchhHH-HHHHHHH-HHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAI-AQVFSSVYFSAWSNRSYFKPLV-FSSIVLF-IGN 326 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~-~~~i~~~~~G~l~Dr~Grr~~~-~~~~~~~-i~~ 326 (619)
...++..++..++.....|.+|.+. +++|.+++++|++.+...+ +.+++++++|+ +||+|||+.+ +.+.+.. ++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 4445567777888888889999876 4689999999999876655 55555555555 9999998864 4544443 666
Q ss_pred HHHHHhhccCcHHHHHHHHH-HhhccCcc-hhhhhhhhccCccchh--hhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 327 VMYALAYDFSSIAVLLIGRL-FCGFGSAR-AVNRRYISDCVPLKIR--MQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~r~-l~G~~~~~-~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
++++++ ++++.+++.+. +.|++... +...+++.++.+++.| +...++.+++.++|.++||++++++.+.+
T Consensus 97 ~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~--- 170 (393)
T PRK15011 97 TLFAWN---RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF--- 170 (393)
T ss_pred HHHHHh---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc---
Confidence 677777 88888766554 44555444 7788888888776655 34557888999999999999999997765
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCC
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (619)
|||+ +|++.+++.++..++.++.+||.++..+..
T Consensus 171 gw~~-----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 204 (393)
T PRK15011 171 SFTV-----MYLSAAVAFIVCGVMVWLFLPSMRKELPLA----------------------------------------- 204 (393)
T ss_pred ChHH-----HHHHHHHHHHHHHHHHHhhcCccCCCCccc-----------------------------------------
Confidence 6666 888888777777777777778765321110
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHH
Q 047440 483 DGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNI 562 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 562 (619)
.. ... . . .+ ..+..+......++.......+..+.|.|+++.+|++..+++.+.+...++.+++.+
T Consensus 205 -~~---~~~--~----~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~ 270 (393)
T PRK15011 205 -TG---TLE--A----P---RR-NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTML 270 (393)
T ss_pred -cc---ccc--c----c---cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 0 0 00 011223333333444444455556788899888899999999888777777777778
Q ss_pred HHHHhhhhccchHHHHHHHHHHHHHHHH
Q 047440 563 IVGSYISNMFEDRQILLASEIMVCIGIL 590 (619)
Q Consensus 563 ~~g~~l~d~~g~r~~l~~~~~~~~i~~~ 590 (619)
+.| +++||+++|+.+..+.+..++.+.
T Consensus 271 ~~G-~l~dr~g~~~~~~~~~~~~~~~~~ 297 (393)
T PRK15011 271 IAG-YFAKRLGKRFLMRVAAVAGVCFYA 297 (393)
T ss_pred HHH-HHHHHhChHHHHHHHHHHHHHHHH
Confidence 878 999999999887766655554443
No 75
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.88 E-value=5.4e-22 Score=185.07 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCccchHHHHhhcC
Q 047440 97 TELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRAN 149 (619)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~~~~~~~~~~~~~ 149 (619)
..+++.+.++|.+++.|++|++||+|||+||.|||||.++.++...||+....
T Consensus 241 ~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~~~ 293 (296)
T COG5408 241 SLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRSVN 293 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Confidence 45777999999999999999999999999999999999999999999986653
No 76
>TIGR00898 2A0119 cation transport protein.
Probab=99.88 E-value=1.5e-21 Score=211.17 Aligned_cols=291 Identities=17% Similarity=0.178 Sum_probs=193.1
Q ss_pred cChHHHHHHhCCc---cchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 269 PTADDYSMSLGAA---ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 269 ~~~~~~~~~~g~s---~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
+..|.+.+++|++ ..+.|++.+++.+|.+++++++|+++||+|||++++.+.++. ++.++++++ ++++.++++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS---PNYTVFLVF 186 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc---ccHHHHHHH
Confidence 4567788899998 899999999999999999999999999999999998887765 888888888 999999999
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHH
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~ 422 (619)
|++.|++.+. +...++++|++|+++|+.+.++...+..+|.+++|++++.+. +||| .+++.++..++
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~-----~~~~~~i~~~~ 255 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRW-----LQLAVSLPTFL 255 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHH-----HHHHHHHHHHH
Confidence 9999999888 889999999999999999999999999999999999887664 3666 77777777655
Q ss_pred HHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHH
Q 047440 423 YLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSA 502 (619)
Q Consensus 423 ~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (619)
..+.. +++||+|+....+.+.++... ...+......... ..+. ... ..++ ..........++++
T Consensus 256 ~~~~~-~~~~esp~~l~~~~~~~~a~~---~l~~~~~~~~~~~-------~~~~-~~~---~~~~-~~~~~~~~~~~~~l 319 (505)
T TIGR00898 256 FFLLS-WFVPESPRWLISQGRIEEALK---ILQRIAKINGKKL-------PAEV-LSL---SLEK-DLSSSKKQYSFLDL 319 (505)
T ss_pred HHHHH-HhcCCChHHHHHCCCHHHHHH---HHHHHHHHcCCCC-------CHHH-Hhh---hhhh-hhhhccCCCcHHHH
Confidence 55444 678999874332111000000 0000000000000 0000 000 0000 00000112244555
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHH
Q 047440 503 YRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASE 582 (619)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~ 582 (619)
++ ++.++...+..++.++.........+.+.. .++.+.. ......+++.+++.++.+ ++.||+|||+.+.++.
T Consensus 320 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~-~l~dr~grr~~~~~~~ 392 (505)
T TIGR00898 320 FR--TPNLRKTTLCLMMLWFTTAFSYYGLVLDLG-NLGGNIY---LDLFISGLVELPAKLITL-LLIDRLGRRYTMAASL 392 (505)
T ss_pred hC--ChHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCChH---HHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHHHHH
Confidence 54 566655555544444443333222333332 2344432 333445666777777777 9999999999999988
Q ss_pred HHHHHHHHhhcccc
Q 047440 583 IMVCIGILFSFHVF 596 (619)
Q Consensus 583 ~~~~i~~~~~~~~~ 596 (619)
++.+++++++...+
T Consensus 393 ~~~~~~~l~~~~~~ 406 (505)
T TIGR00898 393 LLAGVALLLLLFVP 406 (505)
T ss_pred HHHHHHHHHHHHcC
Confidence 88888776665544
No 77
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.88 E-value=1.1e-20 Score=201.91 Aligned_cols=282 Identities=15% Similarity=0.112 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcccc-----CchhH-HHHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS-----YFKPL-VFSSIV 321 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----Grr~~-~~~~~~ 321 (619)
+.....+...+..++......+.+|.+.++.|.+..++|.+ +.....+ ++.+++|+++||+ |||+. ++.+.+
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 33455566666777788889999999999999999999987 4444444 6899999999999 99885 555555
Q ss_pred HH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 322 LF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 322 ~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
.. ++.+++++..+.++++.+.+.+++.|++.+. ++..+++.|++|+++|+++.++...+..+|.++|+.+++++...
T Consensus 90 ~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~ 169 (491)
T PRK11010 90 LLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR 169 (491)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 5666666653446788999999999998777 78899999999999999999999999999999999999998763
Q ss_pred ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCC
Q 047440 399 FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDG 478 (619)
Q Consensus 399 ~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (619)
. ++||+ +|++.+++.++..+..+ ++||+++..+.
T Consensus 170 ~--~GWr~-----~f~i~a~l~ll~~l~~~-~~~e~~~~~~~-------------------------------------- 203 (491)
T PRK11010 170 Y--LGWQG-----MYWLMAALLIPCIIATL-LAPEPTDTIPV-------------------------------------- 203 (491)
T ss_pred c--cCHHH-----HHHHHHHHHHHHHHHHH-hcCCCcccccc--------------------------------------
Confidence 2 26666 88888877665544443 46775431100
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHh-hhhH
Q 047440 479 DQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACL-GLTV 557 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~-~~~~ 557 (619)
. + ........++++.++ ++..+...+..++..........+.++|+.+.+|++..+.+...... .++.
T Consensus 204 ------~-~--~~~~~~~~~l~~~~~--~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~ 272 (491)
T PRK11010 204 ------P-K--TLEQAVVAPLRDFFG--RNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLAT 272 (491)
T ss_pred ------c-c--chhhhHHHHHHHHHc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0 0 000001123444443 55566555555555556566666778887777799999999987544 4667
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCIGI 589 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~ 589 (619)
+++.++.| +++||+|+|+.+.++.++.+++.
T Consensus 273 iiG~ll~G-~L~dr~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 273 IVGALYGG-ILMQRLSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Confidence 77777777 99999999887776655444433
No 78
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.87 E-value=2.1e-20 Score=195.21 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=187.2
Q ss_pred HHhhhHhhccChHHHHHHhC--CccchhhHHHhh-----HHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH
Q 047440 260 YMVNTYIIVPTADDYSMSLG--AAATVCGIVIGA-----MAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL 331 (619)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~g--~s~~~~g~~~s~-----~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~ 331 (619)
..++.....+..+.+.+++. .++.+.+.+.+. ..++..+++++.|+++||+|||++++.+.+.. ++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 44455555556666666643 445556655443 33344578999999999999999998887765 88888888
Q ss_pred hhccCcHH--------HHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc--
Q 047440 332 AYDFSSIA--------VLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF-- 399 (619)
Q Consensus 332 ~~~~~~~~--------~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~-- 399 (619)
+ ++++ .++++|+++|++.+. +...++++|++|+++|++++++...+..+|.++++++++.+....
T Consensus 85 ~---~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~ 161 (394)
T TIGR00883 85 L---PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161 (394)
T ss_pred C---CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 7 6654 588899999999887 888999999999999999999999999999999999887764311
Q ss_pred ---cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCc
Q 047440 400 ---KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDE 476 (619)
Q Consensus 400 ---~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (619)
..++|+| +|++.+++.++. ++.....||+++....+.
T Consensus 162 ~~~~~~~w~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------------- 201 (394)
T TIGR00883 162 DALLEWGWRI-----PFLVSAVLVLIG-LYLRRNLEETPVFEKAQE---------------------------------- 201 (394)
T ss_pred HHhhccchHH-----HHHHHHHHHHHH-HHHHHhcCCChhHHHHHh----------------------------------
Confidence 1235555 777666554433 333344566554222100
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhh
Q 047440 477 DGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLT 556 (619)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 556 (619)
..+....+.++..+-..+.++......++..........+.|.|..+.+|++..+.+......+++
T Consensus 202 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 267 (394)
T TIGR00883 202 --------------KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLIL 267 (394)
T ss_pred --------------ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 000111233344431122356666666666667777778889999888899999999999888999
Q ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 047440 557 VLPVNIIVGSYISNMFEDRQILLASEIMV 585 (619)
Q Consensus 557 ~~~~~~~~g~~l~d~~g~r~~l~~~~~~~ 585 (619)
.+++.++.+ ++.||+|+|+.+..+..+.
T Consensus 268 ~~~~~~~~g-~l~dr~g~~~~~~~~~~~~ 295 (394)
T TIGR00883 268 FFITIPLSG-ALSDRIGRRPVLIIFTVLA 295 (394)
T ss_pred HHHHHHHHH-HHHHHhchHHHHHHHHHHH
Confidence 999988888 9999999999776544433
No 79
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=188.16 Aligned_cols=274 Identities=21% Similarity=0.240 Sum_probs=182.6
Q ss_pred CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc-hh
Q 047440 279 GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AV 356 (619)
Q Consensus 279 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~ 356 (619)
+.+....|.+.|.|.++++++++.+|.++||+|||++++++++.. +..++.+++ .|+..++++|++.|+.-|. .+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---~~F~afv~aR~l~Gi~kgnl~v 140 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---RNFAAFVLARFLGGIFKGNLSV 140 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccCchHH
Confidence 345667899999999999999999999999999999999999876 888888998 9997777779999999999 99
Q ss_pred hhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 357 NRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 357 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
+.++++|++++++|+.+++.++.++++|.++||.+||++..-....+--| +..|-++..++.........+++||+-+
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p--~alP~~~v~i~a~~~v~~~~~~lpETL~ 218 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYP--FALPCLLVFILAAGDVTFFPWFLPETLP 218 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCc--hHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999999999966111011111 2333444444444434556678899876
Q ss_pred hhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcc-------
Q 047440 437 DIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPS------- 509 (619)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 509 (619)
.+++++... . ..+..++ + ....+.. .....-...+++
T Consensus 219 ~rk~~~~~~-----~---------------------~~~~~~~------~---~~~~~~~-~~~~v~~lrn~p~~~~i~~ 262 (451)
T KOG2615|consen 219 LRKRNDEHS-----T---------------------LQEAADD------R---LALLKFA-RIFKVAALRNPPLLDFISV 262 (451)
T ss_pred chhhccccc-----c---------------------hhhhhhh------h---hhhcchh-hhhhhhhhcCccccchHHH
Confidence 555410000 0 0000000 0 0000000 000000000222
Q ss_pred hHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccc--hHHHHHHHHHHHHH
Q 047440 510 VKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFE--DRQILLASEIMVCI 587 (619)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g--~r~~l~~~~~~~~i 587 (619)
.....+.++++...+..+..+.+.+....+|+++.+.|.+++..|+.+.+.+.... ...++.. -+..+..++.++.-
T Consensus 263 ~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~-~~l~~~~~~~~a~l~~~l~~~vP 341 (451)
T KOG2615|consen 263 LRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALV-PILPRYKGNIKAVLLFSLLLIVP 341 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcc-ccccccccchhhHHHHHHHHHHH
Confidence 12233344444444555555555555678999999999999999999999998888 6666655 34444455555444
Q ss_pred HHHhhcc
Q 047440 588 GILFSFH 594 (619)
Q Consensus 588 ~~~~~~~ 594 (619)
.++++..
T Consensus 342 ~~llls~ 348 (451)
T KOG2615|consen 342 AFLLLSL 348 (451)
T ss_pred HHHHHhc
Confidence 4444433
No 80
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.6e-22 Score=195.61 Aligned_cols=243 Identities=16% Similarity=0.203 Sum_probs=198.5
Q ss_pred ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhh
Q 047440 281 AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVN 357 (619)
Q Consensus 281 s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~ 357 (619)
+.+++|++.+...+.+++.+++.|.++||+|+|..+++|++.. .+++++++. .++++++++|.++|+|.+. ++.
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg---~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG---NSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc---chhHHHHHHHHHhhhhHHHHHhhh
Confidence 4678999999999999999999999999999999999998765 999999999 9999999999999999988 899
Q ss_pred hhhhhccCccch-hhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 358 RRYISDCVPLKI-RMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 358 ~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
.++++|.+|.+. |++++|+...+.++|.++||++||.+.+..| +..||++.+++.++...+.++.++.+..
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G--------k~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG--------KSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC--------CcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 999999998865 7999999999999999999999999988776 7889999999988888887777655432
Q ss_pred hhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHH
Q 047440 437 DIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLI 516 (619)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (619)
.... .....+++.+.+ .|.++.....
T Consensus 253 ~~~~----------------------------------------------------~~~~~~~~~Ll~--dP~I~~~aga 278 (464)
T KOG3764|consen 253 DPDS----------------------------------------------------TEQGTPMWSLLM--DPYILLIAGA 278 (464)
T ss_pred Cccc----------------------------------------------------cccCccHHHHHh--CchHhhhhcc
Confidence 1110 112234444544 6777777777
Q ss_pred HHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHH--HHHHHHHHHHH
Q 047440 517 YFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQIL--LASEIMVCIGI 589 (619)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l--~~~~~~~~i~~ 589 (619)
....+.+.......++.+..+.+.-+..+.|+.+...++..+++..+.| .+.||++..+.+ ..++++.++++
T Consensus 279 i~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg-~la~k~~~~~wl~~~~gl~~~G~~~ 352 (464)
T KOG3764|consen 279 ITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFG-KLADKYPHLRWLLSLGGLATVGVSS 352 (464)
T ss_pred hhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHH-HHHHhcCchhHHHHHHHHHHHHHHh
Confidence 7777777788888899988888775555899999999999999999999 999999944433 33444444333
No 81
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.3e-21 Score=198.18 Aligned_cols=287 Identities=14% Similarity=0.153 Sum_probs=193.2
Q ss_pred hhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhh
Q 047440 284 VCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRY 360 (619)
Q Consensus 284 ~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~ 360 (619)
..+.+++++.+|.++|+++.|.++||+|||..++.+.++. ++.++..++...+++.+++++|++.|+..|. ...+.|
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3578899999999999999999999999999887776654 5555555554448999999999999999998 888999
Q ss_pred hhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhh
Q 047440 361 ISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEE 440 (619)
Q Consensus 361 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~ 440 (619)
+.|..|.+.||....+...+..+|.++|..++.--.-+.. ..|.| .+.+..+. .+..++.++++||+|+..-.
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~-~~W~~-----l~~~~~i~-~~~~l~~l~~~PESPk~Ll~ 213 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTE-DLWPY-----LLAFPLIP-ALLQLALLPFLPESPKYLLI 213 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCC-cchHH-----HHHHHHHH-HHHHHHHHhcCCCCcchHHH
Confidence 9999999999999999999999999998766644311110 13555 44444444 45555666788999985433
Q ss_pred -hccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHh--cCcchHHHHHHH
Q 047440 441 -NHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRL--LTPSVKVQLLIY 517 (619)
Q Consensus 441 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 517 (619)
+++.+++ .......+. +.++++..++..+..++.........+++++++- ++++....+...
T Consensus 214 ~k~~~~~A--------~~sl~~y~G-------~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~ 278 (485)
T KOG0569|consen 214 KKGDEEEA--------RKALKFYRG-------KEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVS 278 (485)
T ss_pred HcCCHHHH--------HHHHHHHhC-------CCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHH
Confidence 1111111 000000000 0000000000000000011111244567777762 134455556666
Q ss_pred HHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 518 FMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
+++.+.......++...+-...|++..++.+.....+++.++..++.. +++||+|||++++.++.++.+..+++.
T Consensus 279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~-~lid~~gRRpLll~~~~~~~~~~~~~~ 353 (485)
T KOG0569|consen 279 FAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSP-FLIDRLGRRPLLLISLSLMAVALLLMS 353 (485)
T ss_pred HHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 666666655555555555555699999999999999999999999988 999999999999999888887776554
No 82
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.87 E-value=3.4e-20 Score=193.98 Aligned_cols=290 Identities=14% Similarity=0.111 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
++......++...+.....|.+|.+..+ +|.++.+.|++.+++.++..++++++|+++||+|||+.++.+.+.. ++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3445556666677788888999998775 8999999999999999999999999999999999999887655433 2222
Q ss_pred H---HHHhhc--cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 328 M---YALAYD--FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 328 l---~~~~~~--~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
. ..+... ...++.+++.+++.|++.+. +...+++.+..+ +++..+|......++|.++||++++.+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~- 159 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-I- 159 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-c-
Confidence 1 111100 01233456678888888766 666677766532 34567788888889999999999998854 2
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
+|++ +|++.+++.++..++.+...|++++++..+ .
T Consensus 160 --~~~~-----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~---------------- 194 (396)
T TIGR00882 160 --DPQI-----VFWLGSGFALILMLLLMFAKPKAPSSATVA----------------------N---------------- 194 (396)
T ss_pred --CchH-----HHHHHHHHHHHHHHHHHHhCCCCchhhhhh----------------------c----------------
Confidence 5555 888888777766655555555543321110 0
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcc---cccchhHHHHHHHhhhhH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYF---GWSTGAVAIFLACLGLTV 557 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~~~~~~~~ 557 (619)
.. + .........+..+..+ +++++..++..++..........+.+.|+.+.+ +.+....|...++..++.
T Consensus 195 ---~~-~-~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~ 267 (396)
T TIGR00882 195 ---AL-G-ANASAFSLKLALELFR--QRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLN 267 (396)
T ss_pred ---cc-c-cccCCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 00 0 0000011122333333 666666666655555555555556777777654 455667788888888888
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+++....+ ++.||+|+|+.+.++.++.+++.++....+
T Consensus 268 ~~~~~~~g-~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~ 305 (396)
T TIGR00882 268 ALIMFCAP-LIINRIGAKNALLIAGTIMSVRIIGSSFAT 305 (396)
T ss_pred HHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHhcC
Confidence 88888888 999999999998888887777766544443
No 83
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.86 E-value=4.3e-20 Score=195.89 Aligned_cols=289 Identities=17% Similarity=0.227 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGN 326 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~ 326 (619)
+.+..++.+.+++.++..+....++.++.++.-|+..+|++.++..+..++.++++|.++||++||++++.+-++. +..
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 3455566788888888888888899999999999999999999999999999999999999999999987776543 322
Q ss_pred -HHHHHh-hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 327 -VMYALA-YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 327 -~l~~~~-~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
++..+. ....+.|.+++.-++.|++.+. |+..+++.+++|+++...++++.++..+++.++||.+||.+...+|
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-- 167 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-- 167 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH--
Confidence 222222 1225789999999999999998 9999999999999999999999999999999999999999966553
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCC
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (619)
...+|++.++..++..++ +...+.+......
T Consensus 168 ------~~~~f~inalsfl~~i~~-l~~~~~~~~~~~~------------------------------------------ 198 (524)
T PF05977_consen 168 ------AAAAFLINALSFLISILA-LLRWKPPPPPSSL------------------------------------------ 198 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHH-HHHcccccccccc------------------------------------------
Confidence 233666666554443333 3333322111000
Q ss_pred CCCCCCCCCCCCCCcchHHHHHhc--CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHH
Q 047440 483 DGSDETSEESHPPANSIRSAYRLL--TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPV 560 (619)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 560 (619)
..++....+++-++.. ++.+...++..++..+....+...+|.+..+.+|.++...|++.+..+++++++
T Consensus 199 --------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~G 270 (524)
T PF05977_consen 199 --------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILG 270 (524)
T ss_pred --------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 0001112233333332 455665555555666655666677899999999999999999999999999999
Q ss_pred HHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 561 NIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 561 ~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+++.+ ++.+++++++++..+.++.+++++.+.+.+
T Consensus 271 al~~~-~l~~~~~~~~lv~~~~~~~a~~~~~lal~~ 305 (524)
T PF05977_consen 271 ALLLP-RLRRRLSSRRLVLLASLLFALALLLLALSP 305 (524)
T ss_pred HHHHH-HhhcccCcchhhHHHHHHHHHHHHHHhcch
Confidence 99998 899999998888888888888777776665
No 84
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.86 E-value=1.7e-20 Score=222.24 Aligned_cols=247 Identities=10% Similarity=0.044 Sum_probs=179.0
Q ss_pred chhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHH---HHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hh
Q 047440 283 TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSI---VLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AV 356 (619)
Q Consensus 283 ~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~---~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~ 356 (619)
...++..+++.++++++++++|+++||+|||+++.... +.. +..+++... +++++++++|+++|++.+. |+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~---~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL---NSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhhchH
Confidence 45788899999999999999999999999999763322 222 223333344 7899999999999999887 89
Q ss_pred hhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 357 NRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 357 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
..+++.+++|+++|++++|+.+++.++|.++||+++|++.... +|+| .|+..+++ .+..+++.+.+|+++.
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~---~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~ 199 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG---NFVI-----LVALLMGI-AVLGWLASLFIPKTGN 199 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHH-----HHHHHHHH-HHHHHHHHhhCCCCCC
Confidence 9999999999999999999999999999999999999997654 5666 55333333 3344444555666543
Q ss_pred hhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHH
Q 047440 437 DIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLI 516 (619)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (619)
..... . ............++.+++ ++.++..++.
T Consensus 200 ~~~~~------------------------------------------~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 233 (1140)
T PRK06814 200 AAPDL------------------------------------------K--IDRNIIRSTITLLKYAKA--DKRIWLAILG 233 (1140)
T ss_pred CCCCC------------------------------------------e--eccchHHHHHHHHHHHhc--CchHHHHHHH
Confidence 21110 0 000000000112333333 6777777777
Q ss_pred HHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 047440 517 YFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIG 588 (619)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~ 588 (619)
.++.++....+..++|.|+.+.+|.++...|+++++.++++++++++.+ ++.++.++++.+..+.++.+++
T Consensus 234 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g-~l~~~~~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 234 ISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLAS-KLSEGRITLLYVPIGALLMGLF 304 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH-HHhCCceeeeeehHHHHHHHHH
Confidence 7777777778888999999999999999999999999999999999999 8988776665555444444433
No 85
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.86 E-value=6.9e-20 Score=191.93 Aligned_cols=276 Identities=16% Similarity=0.061 Sum_probs=194.9
Q ss_pred HHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcccc-----Cchh-HHHHHHHHH-HHH
Q 047440 254 LANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS-----YFKP-LVFSSIVLF-IGN 326 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----Grr~-~~~~~~~~~-i~~ 326 (619)
+...+..++..+.....+|.+.++.|+|.+++|++..+... .+..+++|+++||+ |||+ .+..+.+.. ++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34556667778889999999999999999999999776665 68999999999999 8775 566655544 555
Q ss_pred HHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccce
Q 047440 327 VMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKL 404 (619)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w 404 (619)
.++++..+..+++.+++..++.|++.+. ++..++++|++|+++|+++.++...+.++|.++|+.+++++.... ++|
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~--~gw 160 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV--LGW 160 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCH
Confidence 5556553335678888887787777666 888999999999999999999999999999999999999886543 256
Q ss_pred eccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCC
Q 047440 405 TFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDG 484 (619)
Q Consensus 405 ~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (619)
++ +|++.+++.++..+. .+.+||++..... .
T Consensus 161 ~~-----~f~i~a~~~l~~~l~-~~~~~e~~~~~~~-------------------------------------------~ 191 (402)
T PRK11902 161 GN-----TYLLMAGLMLAGALT-TLWAPEPEVPARP-------------------------------------------P 191 (402)
T ss_pred HH-----HHHHHHHHHHHHHHH-HHhcCCCcccccc-------------------------------------------c
Confidence 66 888877776554443 4556765432110 0
Q ss_pred CCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhh-hHHHHHHH
Q 047440 485 SDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGL-TVLPVNII 563 (619)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~ 563 (619)
+ .........++.+++ +|.++..++..++..........+.++++.+.+|+++.+.|++....++ +.+++..+
T Consensus 192 --~--~~~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~ 265 (402)
T PRK11902 192 --R--SLGEAVVGPLRDFFS--RRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALA 265 (402)
T ss_pred --c--hhHHHHHHHHHHHHh--CcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 0 000001123344444 6666666666555555443333445556666679999999998876665 46666777
Q ss_pred HHHhhhhccchHHHHHHHHHHHHHHH
Q 047440 564 VGSYISNMFEDRQILLASEIMVCIGI 589 (619)
Q Consensus 564 ~g~~l~d~~g~r~~l~~~~~~~~i~~ 589 (619)
.+ ++.||+++|+.+..+.++.+++.
T Consensus 266 ~g-~l~~r~g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 266 GG-TLMVRLGLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HH-HHHHHHhHHHHHHHHHHHHHHHH
Confidence 67 99999999988776666555443
No 86
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.85 E-value=6.2e-20 Score=193.49 Aligned_cols=289 Identities=15% Similarity=0.120 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
++......++..++.+...|.+|.+..+ +|+++.++|++.+++.++..++++++|+++||+|||++++.+.... ++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 91 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFG 91 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3444456666666677888999999887 9999999999999999999999999999999999999886654432 2221
Q ss_pred HH-H--Hhhc-c-CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 328 MY-A--LAYD-F-SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 328 l~-~--~~~~-~-~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
.. . .... . ..+...++++++.|.+... +....+..+. .++++..+|......++|.++||++++++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-- 167 (420)
T PRK09528 92 PFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-- 167 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--
Confidence 11 1 1100 0 1111123334444433322 3333333222 34567788899999999999999999988642
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
+|++ +|++.+++.++..++.++..|++++....+ +
T Consensus 168 --~~~~-----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~----- 202 (420)
T PRK09528 168 --NPQI-----NFWLGSGSALILLVLLFFAKPDAPSTAKVA---------------------------------N----- 202 (420)
T ss_pred --CchH-----hHHHHHHHHHHHHHHHhcccccccchhhhc---------------------------------c-----
Confidence 4555 788877776666555555444433321110 0
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcc---cccchhHHHHHHHhhhh
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYF---GWSTGAVAIFLACLGLT 556 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~~~~~~~ 556 (619)
+ +. ..+.....++....+ +++++...+..++.......+...+|.|+.+.+ +.+....|.+.++..++
T Consensus 203 ---~-~~----~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 274 (420)
T PRK09528 203 ---A-LG----ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFL 274 (420)
T ss_pred ---c-hh----cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 0 00 000111233333333 555555554444444444444455677665543 45666778888888888
Q ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 557 VLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 557 ~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
.+++.++.+ ++.||+|+|+.+..+.++.+++.+++...+
T Consensus 275 ~~~~~~~~g-~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~ 313 (420)
T PRK09528 275 EALIMFFAP-FIINRIGAKNALLLAGTIMAVRIIGSGFAT 313 (420)
T ss_pred HHHHHHHHH-HHHHHhCcchhhHHHHHHHHHHHHHHHhcc
Confidence 888888888 999999999998888888777766665544
No 87
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.85 E-value=2.5e-20 Score=200.93 Aligned_cols=314 Identities=17% Similarity=0.164 Sum_probs=198.9
Q ss_pred HHHHHHHHHhh--hHhhccChHHHHHHh---CCcc----chhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 253 NLANTFLYMVN--TYIIVPTADDYSMSL---GAAA----TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 253 ~~~~~~~~~~~--~~~~~~~~~~~~~~~---g~s~----~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
.....+..+.+ .+...+..+.+.+.. .... .+.+++.++..++.+++++++|+++|++|||+.++.+.+..
T Consensus 50 ~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~ 129 (513)
T KOG0254|consen 50 AALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLF 129 (513)
T ss_pred HHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33344444443 345566666665532 1122 34599999999999999999999999999999998888766
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.++++++ +|+++++++|++.|+|.|. .+.+.|++|+.|++.||...+..+.+..+|..+|..++...... .
T Consensus 130 ~iG~ii~~~a---~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~ 205 (513)
T KOG0254|consen 130 LIGAIIIALA---PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y 205 (513)
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C
Confidence 999999999 9999999999999999998 78999999999999999999999999999999996666655433 1
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
++||+ ++.+..+.+++..+. .+++||+|+...++.+..+. .......+++. ......+.+...
T Consensus 206 -~~Wr~-----~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a--------~~~l~~l~g~~--~~~~~~~~~~~~ 268 (513)
T KOG0254|consen 206 -AGWRI-----PLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEA--------KRSLKRLRGLS--PEDVEVELELLK 268 (513)
T ss_pred -ccHHH-----HHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHH--------HHHHHHHhCCC--CcchHHHHHHHH
Confidence 35655 677777776666666 88899999865542211111 00000000000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHH-hcCcchHHHHHHHHHHHHHHHHHhh-chhhhhhhcccccchhHHHHHHHhhhhHH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYR-LLTPSVKVQLLIYFMLKYVMEILLS-ESSVVTTYYFGWSTGAVAIFLACLGLTVL 558 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 558 (619)
...... .........+.++.. ...++....+.+..+++++...... +.+.+++. .|.+... .....+.++..+
T Consensus 269 -~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~ 343 (513)
T KOG0254|consen 269 -IKLLVE--AEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNF 343 (513)
T ss_pred -HHHHHh--hhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHH
Confidence 000000 000000001222222 1134455555566666665544443 34444444 4665443 444455566666
Q ss_pred HHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 559 PVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 559 ~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
++..+.. ++.||+|||.+++.+.+.++++++++.
T Consensus 344 ~~t~~~~-~lvd~~gRr~lll~s~~~m~~~~~~~~ 377 (513)
T KOG0254|consen 344 LGTLVAT-YLVDRFGRRKLLLFGAAGMSICLVILA 377 (513)
T ss_pred HHHHHHH-HHHHHhccHHHHHHhHHHHHHHHHHHH
Confidence 6666666 899999999999999988888887654
No 88
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.84 E-value=7e-19 Score=178.24 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=137.8
Q ss_pred hHhhccChHHHHHHhCCccch-hhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHHHhhccCcHHHH
Q 047440 264 TYIIVPTADDYSMSLGAAATV-CGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL-FIGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 264 ~~~~~~~~~~~~~~~g~s~~~-~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~-~i~~~l~~~~~~~~~~~~l 341 (619)
........|.+.+++|++..+ .|.+.+++..+++++.++.|+++||+|.|+++..+++. .+..++.+++ ++++.+
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---~Sl~~L 118 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---TSVWHM 118 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 344555667788899999999 99999999999999999999999999999999777764 5899999998 999999
Q ss_pred HHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHH
Q 047440 342 LIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAW 420 (619)
Q Consensus 342 ~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~ 420 (619)
.+.|++.|++.|. .+...++..|+|+++|+++.|++..+..+|.++++++++++. .+ +|++ |....++.....
T Consensus 119 ~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~---gWr~--y~~Ln~Isl~s~ 192 (511)
T TIGR00806 119 QLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TL---GWIS--YSTLNIISLVFM 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc---Cchh--HHHHHHHHHHHH
Confidence 9999999999999 888899999999999999999999999999999999999943 33 6777 676776666554
Q ss_pred HHHHHHHhhhccCCch
Q 047440 421 LFYLVWLCISFKEPSR 436 (619)
Q Consensus 421 ~~~~~~~~~~~pe~~~ 436 (619)
.+++++ .+++|..++
T Consensus 193 ~~a~~~-a~~LP~~~~ 207 (511)
T TIGR00806 193 TFSVFL-ALFLKRPKR 207 (511)
T ss_pred HHHHHH-HHhCCCCch
Confidence 444444 456775444
No 89
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.83 E-value=5.4e-19 Score=180.31 Aligned_cols=305 Identities=28% Similarity=0.482 Sum_probs=225.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHhhhHhhccChHHHHHH--hCCccchhhHHHhhHHHHHHHHhhhhhhhccccC--chhH
Q 047440 240 IDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMS--LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY--FKPL 315 (619)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G--rr~~ 315 (619)
...++.+|+.+.+..+..++..+..+++.+..-.|.++ .+.+.+..|++.++..+|.+++++.+|++..|.| +||+
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl 105 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL 105 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence 34457789999999999999999999999999999998 6788889999999999999999999999999988 7888
Q ss_pred HHHHHHHHHHHHHH-HHhhccC-cHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHh
Q 047440 316 VFSSIVLFIGNVMY-ALAYDFS-SIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA 392 (619)
Q Consensus 316 ~~~~~~~~i~~~l~-~~~~~~~-~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~ 392 (619)
+...++..+|++++ ++.+..+ ..|.++++|++.|+|.|. ++..+|+++....++|.++++....+..+|.++||.++
T Consensus 106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q 185 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ 185 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence 77777777888888 5544334 789999999999999999 99999999999999999999999998899999998888
Q ss_pred hhhh----ccccc-cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCccc
Q 047440 393 GLLQ----TNFKI-YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLI 467 (619)
Q Consensus 393 ~~l~----~~~~~-~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (619)
..+. .++.. ++..|+.|..|-|+.++++++.++++.++++|.++....+..+
T Consensus 186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~----------------------- 242 (488)
T KOG2325|consen 186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKR----------------------- 242 (488)
T ss_pred HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccc-----------------------
Confidence 7772 22211 2367777999999999999999999999999988754331000
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhH-
Q 047440 468 TSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAV- 546 (619)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~- 546 (619)
.+ ++.+.+.+....++.. ....+.+++..+...+......+..+.+....++|+..++
T Consensus 243 ------~~-------~~~~~~~~~~~~~~~d--------~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av 301 (488)
T KOG2325|consen 243 ------SV-------EEEKSDIEKVKKPKLD--------WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAV 301 (488)
T ss_pred ------cc-------hhhccchhhhccCChh--------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHH
Confidence 00 0000000001111111 2234555666666777777777888888888889987766
Q ss_pred ---HHHHHHhhhhHHHHHHHHHHhhh-hccchHHHHHHHHHHHHHHH
Q 047440 547 ---AIFLACLGLTVLPVNIIVGSYIS-NMFEDRQILLASEIMVCIGI 589 (619)
Q Consensus 547 ---g~~~~~~~~~~~~~~~~~g~~l~-d~~g~r~~l~~~~~~~~i~~ 589 (619)
|...++.++..+...+..+ ... .++.+|..+..+++....+.
T Consensus 302 ~~~gi~~~~~g~ls~~~~l~~~-f~~l~~i~~r~~~~~g~l~~f~~~ 347 (488)
T KOG2325|consen 302 LYNGITLSISGILSVILLLLYI-FTRLGKIDKRRIILLGFLIFFLSY 347 (488)
T ss_pred HhhhhHHHHHHHHHHHHHHHHH-HHHhhhhccceeeeehHHHHHHhh
Confidence 5666666666666655555 232 44455666666644444433
No 90
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.83 E-value=5.8e-18 Score=165.70 Aligned_cols=290 Identities=12% Similarity=0.092 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
.+.++....++.++......+.+|.+.+.++++..+.+++..++..|+.+.+++.|++.+|+|+|.-++.++.+. +++.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445555566677777788899999999999999999999999999999999999999999999999998888776 8888
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc-------
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN------- 398 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~------- 398 (619)
++.-+....++..++++-++.|.|.+. +++..+++...+++.-...+++.+.+.++|.++||++++++..+
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 776443337888899999999999999 99999999999999999999999999999999999999998542
Q ss_pred ---c------cccceeccccchhHHHHHHHHHHHHHHHhh-hccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccC
Q 047440 399 ---F------KIYKLTFNQNTLPGWIMAVAWLFYLVWLCI-SFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLIT 468 (619)
Q Consensus 399 ---~------~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~-~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (619)
. ....|+| |+...+.+.++..+.... -.|+.+.....
T Consensus 174 ~~~~~~~~~~~~~~v~~-----pYl~~~~~lvll~v~~~~~k~p~~~~~~~~---------------------------- 220 (422)
T COG0738 174 AAQILAIKGADASSVQF-----PYLILAGLLVLLAVLILLSKLPDLQVAAPS---------------------------- 220 (422)
T ss_pred HHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHhccCCcCCccccc----------------------------
Confidence 0 0112444 777666654433333222 11221111100
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHH
Q 047440 469 SEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAI 548 (619)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 548 (619)
..........++++ +|.++...+..|++..+.....++++.|+.+..|.+..+++.
T Consensus 221 ----------------------~~~~~~~~~~~l~~--~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~ 276 (422)
T COG0738 221 ----------------------LGASGSAGLSSLFQ--NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAY 276 (422)
T ss_pred ----------------------ccccccchHHHHHh--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 00111114556666 889999999999999999999999999999977999999999
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 549 FLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 549 ~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
..+....+.++|+++.. ++..|+...+.+....+...+.++.....+
T Consensus 277 ~~s~~~~~~~vGRFig~-~lm~~~~~~k~Laf~a~~~ill~~~~~l~~ 323 (422)
T COG0738 277 YLSFFWVGFMVGRFIGS-ALMSRIKPEKYLAFYALIAILLLLAVALIG 323 (422)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998777 888899998888776655555555544544
No 91
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.82 E-value=7.2e-19 Score=186.64 Aligned_cols=277 Identities=14% Similarity=0.124 Sum_probs=188.6
Q ss_pred hhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccc----cCch-hHHHHHHHHH-HHHHHHHHhhcc
Q 047440 263 NTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR----SYFK-PLVFSSIVLF-IGNVMYALAYDF 335 (619)
Q Consensus 263 ~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~Grr-~~~~~~~~~~-i~~~l~~~~~~~ 335 (619)
...+..+.++.+.. ++|+++.++|++.++..+..++..|+.|+++|| +||| +.++.+.+.. ++.+++.+.+..
T Consensus 14 ~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~ 93 (437)
T TIGR00792 14 IFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF 93 (437)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence 33444444444444 689999999999999999999999999999998 6774 4566665544 666666655211
Q ss_pred ---CcHHHHHHHHHHhhccCcc--hhhhhhhhccC-ccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc----cccee
Q 047440 336 ---SSIAVLLIGRLFCGFGSAR--AVNRRYISDCV-PLKIRMQASAGFVSASALGMACGPALAGLLQTNFK----IYKLT 405 (619)
Q Consensus 336 ---~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~----~~~w~ 405 (619)
..++.+++.+++.+++.+. +...++.+|.. ++++|++..++...+..+|.++++.+.+.+....+ ..+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 1245667778888887776 56677888887 57899999999998888888887777666633221 12455
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCC
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGS 485 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (619)
+ ++++.+++.++..++.++..||+++.... +
T Consensus 174 ~-----~~~i~~~l~~~~~~~~~~~~~e~~~~~~~-------------------------------------------~- 204 (437)
T TIGR00792 174 M-----FALVLALIGVVSLIICFFGTKERYSEIPK-------------------------------------------N- 204 (437)
T ss_pred H-----HHHHHHHHHHHHHHHHHcCCEecCCCCCc-------------------------------------------c-
Confidence 5 78888887777777766777765421000 0
Q ss_pred CCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHH
Q 047440 486 DETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVG 565 (619)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 565 (619)
...+.+....++.+++ +|+++..++..++...+......+.+.|.+..++ +....+.+..+..++.+++.++.+
T Consensus 205 ---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~ 278 (437)
T TIGR00792 205 ---IEKKLSLKQIFKALFK--NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFP 278 (437)
T ss_pred ---cccCCCHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011112333333 6777777777777777766665666666666555 455667777777788888888888
Q ss_pred HhhhhccchHHHHHHHHHHHHHHHHhhccc
Q 047440 566 SYISNMFEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 566 ~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
+++||+|+|+++.++.++.+++++++...
T Consensus 279 -~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 279 -RLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred -HHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998888877777665443
No 92
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.81 E-value=2.1e-18 Score=180.91 Aligned_cols=272 Identities=11% Similarity=0.068 Sum_probs=183.7
Q ss_pred HHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCc-hhHHHHHHHHH-HHHHHHH
Q 047440 254 LANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYF-KPLVFSSIVLF-IGNVMYA 330 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Gr-r~~~~~~~~~~-i~~~l~~ 330 (619)
.+..++....+++..|.++.+.. ++|++..++|++.+++.++.+++++++|+++||+|| |+++.++.+.. ++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777765 589999999999999999999999999999999865 76777666555 6777777
Q ss_pred HhhccCcHHHHHHHHHHhhccCcc--hhhhhh----hh----ccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 331 LAYDFSSIAVLLIGRLFCGFGSAR--AVNRRY----IS----DCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 331 ~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~----i~----~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+. ++++.+++.|++.|++.+. +...++ +. |......|.+.+| .+|.++||++++.+....
T Consensus 88 ~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~- 157 (418)
T TIGR00889 88 QV---TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL- 157 (418)
T ss_pred Hh---cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc-
Confidence 77 8899999999999997665 433333 22 3233334445444 468888899888873321
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (619)
.| .+|++.+++.++..++ .+.+||+|+..+++
T Consensus 158 ----~~----~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~--------------------------------------- 189 (418)
T TIGR00889 158 ----SN----IQLYITAGSSALLGVF-ALTLPDIPVAKSTA--------------------------------------- 189 (418)
T ss_pred ----hh----HHHHHHHHHHHHHHHH-HhcCCCCCCCcccc---------------------------------------
Confidence 12 2566766665655544 45678765321110
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhccccc--------chhHHHHHHH
Q 047440 481 EYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWS--------TGAVAIFLAC 552 (619)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~g~~~~~ 552 (619)
+ . .. ........+...+ +++++..++..++..........+++.|..+. |.+ ....+...++
T Consensus 190 ---~--~-~~-~~~~~~~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~ 259 (418)
T TIGR00889 190 ---K--M-SI-KVMLGLDAFILFK--NKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSL 259 (418)
T ss_pred ---c--c-CH-HHHhhhhHHHHhc--CCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHH
Confidence 0 0 00 0000011223333 66666666666666665555666677777664 544 3566888899
Q ss_pred hhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcc
Q 047440 553 LGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFH 594 (619)
Q Consensus 553 ~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~ 594 (619)
..+..+++.++.+ +++||+|+|+++..+.++.++++.++..
T Consensus 260 ~~i~~i~~~~~~g-~l~dr~g~r~~l~~~~~~~~v~~~l~~~ 300 (418)
T TIGR00889 260 SQFSEIFFILTIP-FFLKRFGIKKVMLLSLVAWALRFGFFAY 300 (418)
T ss_pred HHHHHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 8889999988888 9999999999999998888887655544
No 93
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.81 E-value=7.1e-18 Score=179.52 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH---hCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS---LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVLF 323 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~~ 323 (619)
+.+..+++..++..++++...+.+|.|..+ +|.+..+.|++.+++.++..++++++|+++|| +|||++++.+.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 345566677777788888888999999875 89999999999999999999999999999999 89999998888765
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccch---hhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKI---RMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
++.++++++ ++++.++++|++.|+|.|. +...+++++++|+++ |+.++++++.+.++|.++||++++++.+
T Consensus 90 ~~g~~~~~~~---~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 90 MLGHFMLAMS---IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred HHHHHHHHhc---ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887 7888899999999999887 888899999998754 8889999999999999999999999977
Q ss_pred cccccceeccccchhHHHHHHHHHHH
Q 047440 398 NFKIYKLTFNQNTLPGWIMAVAWLFY 423 (619)
Q Consensus 398 ~~~~~~w~w~~~~~~~~~~~~~~~~~ 423 (619)
.. +|++ .|++.++..++.
T Consensus 167 ~~---g~~~-----~f~~~~~~~~~~ 184 (475)
T TIGR00924 167 NY---GYHV-----GFNLAAVGMVIG 184 (475)
T ss_pred hc---ChHH-----HHHHHHHHHHHH
Confidence 65 5666 777766544433
No 94
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.80 E-value=1e-17 Score=178.31 Aligned_cols=176 Identities=14% Similarity=0.091 Sum_probs=143.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHH
Q 047440 245 YHFMSLLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVL 322 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~ 322 (619)
.+++.++.+++..+...++++...+.++.|.. ++|.+..+.+++.+++.+...+..+++|+++|| +|||++++.+.+.
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 35566777777888888888888888888865 599999999999999998889999999999999 9999999888876
Q ss_pred H-HHHHHHHHhhccCcHHH-HHHHHHHhhccCcc--hhhhhhhhccCccc--hhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 323 F-IGNVMYALAYDFSSIAV-LLIGRLFCGFGSAR--AVNRRYISDCVPLK--IRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 323 ~-i~~~l~~~~~~~~~~~~-l~~~r~l~G~~~~~--~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
. ++.++++++ .+... ++++|+++|+|.|. +...++++|.+|++ +|+.++++++++.++|.++||.+++++.
T Consensus 91 ~~~g~~~~~~~---~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 91 LAIGYFMTGMS---LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHh---ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5 888888887 55443 55899999999887 88899999999887 4588999999999999999999999998
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhcc
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFK 432 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~p 432 (619)
+.. +|+| .|++.++. ++..++.+...+
T Consensus 168 ~~~---gw~~-----~F~i~~i~-~~~~~~~~~~~~ 194 (489)
T PRK10207 168 DKF---GYSV-----TYNLCGAG-LIIALLVYFACR 194 (489)
T ss_pred Hhh---ChHH-----HHHHHHHH-HHHHHHHHHHcc
Confidence 776 6777 78776543 444444444444
No 95
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.80 E-value=8e-18 Score=161.01 Aligned_cols=336 Identities=13% Similarity=0.078 Sum_probs=211.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440 243 QKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL 322 (619)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~ 322 (619)
.+.+|........+.+...+-.....-+.|......|.+..+..++......|..+++..||.++|++|||+.+....+.
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~ 152 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV 152 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence 35566666666666655555555555666667777899999999999999999999999999999999999998777766
Q ss_pred H-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 323 F-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 323 ~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
. +...+.+.+ +|+..+.+.|.+.|+|.|+ |...++-.|..|..+|+..+-.. ..+.+|.++...++..+..++
T Consensus 153 t~v~~~is~~s---pnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~- 227 (528)
T KOG0253|consen 153 TGVFGVISGAS---PNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF- 227 (528)
T ss_pred HHHHHHhhcCC---CCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh-
Confidence 5 777777888 9999999999999999999 99999999999999999887777 999999999999988887776
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCccc--CCCCCCCCcCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLI--TSEEKPEDEDG 478 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 478 (619)
||||. .|.. . ..+..+....+++||+|+..-.++++.....- .+.-+..++.+-|... .+....+++
T Consensus 228 --gwr~~----l~~~-~-~pl~~~a~f~~w~~ESpRf~~~~G~~~kAlet-L~kiArmNg~qlplgvl~~s~~~~~e~-- 296 (528)
T KOG0253|consen 228 --GWRYL----LFTS-S-TPLMFAARFLVWVYESPRFYLAKGDDYKALET-LHKIARMNGKQLPLGVLESSAIDRQEQ-- 296 (528)
T ss_pred --hHHHH----HHHH-H-hHHHHHHHHHhhcccCcchhhhcCChHHHHHH-HHHHHHhcCCCCCcceeeeehhhhhhh--
Confidence 78883 1222 2 33444555567889999855432211111000 0000111222222111 111111111
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhchhhhhhhc--cc---------------
Q 047440 479 DQEYDGSDETSEESHPPANSIRSAYRL-LTPSVKVQLLIYFMLKYVMEILLSESSVVTTYY--FG--------------- 540 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g--------------- 540 (619)
++.+.++......+.......+++.- +++..+....++|...+.+++..-......+.. ++
T Consensus 297 -e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~ 375 (528)
T KOG0253|consen 297 -EESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRAN 375 (528)
T ss_pred -hhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhc
Confidence 11111111111111222222222211 134444455555555555555443222222221 00
Q ss_pred --ccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 541 --WSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 541 --~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
.+....-.-..+..+...+|.++.+ +++||+|||+.+..++++++++.+++....
T Consensus 376 c~~s~~~dYrdllitslaefPGlLIt~-~iverlGRKkTMal~l~~f~iflfll~~c~ 432 (528)
T KOG0253|consen 376 CPLSVAKDYRDLLITSLAEFPGLLITG-VIVERLGRKKTMALSLILFGIFLFLLTTCK 432 (528)
T ss_pred CCccchhHHHHHHHHHHhhCCchhHHH-HHHHHhcchhHHHHHHHHHHHHHHHHHHhc
Confidence 1111112233455677788888888 999999999999999998888887766543
No 96
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.2e-17 Score=176.37 Aligned_cols=350 Identities=13% Similarity=0.094 Sum_probs=226.6
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH
Q 047440 242 DQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV 321 (619)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~ 321 (619)
...+.|..+...+++.+....-......+.+.+.++++.+.++++|+.++......+.+|+.+.+.||+|.|.+.+.+.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 44666766655555544433333444577888999999999999999999999999999999999999999998877776
Q ss_pred HH-HHHHHHHHhhccCcHHHHHHHH-HHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 322 LF-IGNVMYALAYDFSSIAVLLIGR-LFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 322 ~~-i~~~l~~~~~~~~~~~~l~~~r-~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
+. +|.++..++ +++|.+++.. ++.|+|.|. ......++.++ +++|+.+.|+...+.++|.++-|.+..++.+
T Consensus 120 v~~~g~~lssF~---~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~ 195 (509)
T KOG2504|consen 120 VAALGLLLSSFA---TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLS 195 (509)
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence 65 999999999 9999888765 777999998 55556666555 6789999999999999999999999999987
Q ss_pred cccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcC
Q 047440 398 NFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDED 477 (619)
Q Consensus 398 ~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (619)
.+ |||+ .+++.+.+.+-.++.....-|.+++..+....+.+ . .....+...................
T Consensus 196 ~~---G~r~-----~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (509)
T KOG2504|consen 196 KY---GWRG-----ALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLR--N---SAASVESTPKPVELRISERDSGLKK 262 (509)
T ss_pred Hh---CcHH-----HHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhc--c---ccccccccccccccccccCCCCCCc
Confidence 77 6777 77777777666666666665544432211000000 0 0000000000000000000000000
Q ss_pred CCCCCCCC-CCCCCCCC--CCCcchH--HHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHH
Q 047440 478 GDQEYDGS-DETSEESH--PPANSIR--SAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLAC 552 (619)
Q Consensus 478 ~~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 552 (619)
........ +..+.... ..+.... +.-.+..+.++...+...+..+++.....++|.|..+ .|++..+++.++++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Si 341 (509)
T KOG2504|consen 263 LSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSI 341 (509)
T ss_pred ccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHH
Confidence 00000000 00000000 1111111 1222226777777788888888888888899999985 49999999999999
Q ss_pred hhhhHHHHHHHHHHhhhhccchHH--HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhh
Q 047440 553 LGLTVLPVNIIVGSYISNMFEDRQ--ILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFV 613 (619)
Q Consensus 553 ~~~~~~~~~~~~g~~l~d~~g~r~--~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~ 613 (619)
.++..+++.++.| ++.|+...++ +..++.+..+++.+.+.... +.+.++...+++++
T Consensus 342 igi~~i~gRi~~G-~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~---~~~~l~~~~~~fG~ 400 (509)
T KOG2504|consen 342 IGVSDIIGRIILG-LLADKPGIRALVLFLLTLLIAGLARLFLPFAT---TYVGLIVFSILFGF 400 (509)
T ss_pred HHHhhhhhhhhhh-hhcCccccchHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH
Confidence 9999999999999 9999987444 33445555555554444433 44444444444433
No 97
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.79 E-value=3e-17 Score=171.34 Aligned_cols=275 Identities=11% Similarity=-0.033 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHH--HhhHHHHHHHHhhhhh-hhccccCchhHHHHHHHHH--H
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIV--IGAMAIAQVFSSVYFS-AWSNRSYFKPLVFSSIVLF--I 324 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~--~s~~~~~~~i~~~~~G-~l~Dr~Grr~~~~~~~~~~--i 324 (619)
+..+...++..++..++..|.+|.+.++.|.+.+++|++ .++..+...+.+|+++ +.+||+|||+..+..+.+. +
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 345556777888888999999999999999999999997 4667888888888884 4799999988764444222 2
Q ss_pred HHHHHHHhhccCc-HHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 325 GNVMYALAYDFSS-IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 325 ~~~l~~~~~~~~~-~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
+....+......+ ...++...++.++..+. +...++..|..++++++...+....+..+|.++|+.+.+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~-- 160 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF-- 160 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 2222221111122 33334444444455444 677778888888888888888888888999999998888887765
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
+|+. +|++.+++.++..+..++..|+++++.+.
T Consensus 161 -gw~~-----~f~~~a~l~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 193 (390)
T TIGR02718 161 -GQRP-----AFLLVACVPLASLVCVLWLKDRAVASPEA----------------------------------------- 193 (390)
T ss_pred -CHHH-----HHHHHHHHHHHHHHHHHHcCCCCcCcccc-----------------------------------------
Confidence 4555 88888888766666554443432211000
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHH-H
Q 047440 482 YDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLP-V 560 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~-~ 560 (619)
......++++..+ +|.++..+...++...+......+.++|+.+. |+++.++|.+....++...+ +
T Consensus 194 ----------~~~~~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-G~s~~~ig~~~~~~~~~~~~~g 260 (390)
T TIGR02718 194 ----------PLARRASLFRFFR--RPLAWSLLALALLSAMTAVSGFGLSKLYLVDA-GWPLEWIGRLGMAGGAVTVLLG 260 (390)
T ss_pred ----------chhhHHHHHHHHc--CcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc-CCCHHHHHHHHhHHHHHHHHHH
Confidence 0001112333333 56677677777777776777777888898884 99999999998887765544 4
Q ss_pred HHHHHHhhhhccchHHHHHHHHHHHHH
Q 047440 561 NIIVGSYISNMFEDRQILLASEIMVCI 587 (619)
Q Consensus 561 ~~~~g~~l~d~~g~r~~l~~~~~~~~i 587 (619)
.++.+ ++.||+|+++.+..+.++.++
T Consensus 261 ~~~~g-~l~~r~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 261 CGGGA-WLVRRAGLWRTFILGVGLAGS 286 (390)
T ss_pred HHHHH-HHHHHhhHHHHHHHHHHHHHH
Confidence 55656 999999999988877665533
No 98
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=188.89 Aligned_cols=288 Identities=19% Similarity=0.171 Sum_probs=185.4
Q ss_pred HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc
Q 047440 276 MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR 354 (619)
Q Consensus 276 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~ 354 (619)
+.++.+.....+..+++.+|.++|++++|+++||+|||++++.+++.. ++.++.+++ +|++.+++.|++.|++.++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---~~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---PNYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhccc
Confidence 446778888999999999999999999999999999999999998876 888999999 9999999999999999888
Q ss_pred --hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhcc
Q 047440 355 --AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFK 432 (619)
Q Consensus 355 --~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~p 432 (619)
.++..+++|+++++.|+.++++ ..+...|..++|++++++.. +||| .+++..+.+++.+++ +++.|
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~-----~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRW-----LFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHH-----HHHHHHHHHHHHHHH-HHccC
Confidence 8899999999999999999999 77888888888888888866 6787 677777776655555 66667
Q ss_pred CCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHH
Q 047440 433 EPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKV 512 (619)
Q Consensus 433 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (619)
|+|+....+++..+.... ..+..+...+. ....+.................+...+.++++ .+++..
T Consensus 256 Es~rwl~~~g~~~~a~~~---l~~~a~~n~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~l~~ 322 (521)
T KOG0255|consen 256 ESPRWLLSKGRIDEAIKI---LKKIAKLNGRK--------LSVKELLRLELLLRPLKLLFTEPKISFLDLFR--TPRLRY 322 (521)
T ss_pred cChHHHHHcCchHHHHHH---HHHHHhhcCCC--------CCcHHHHHHHHHhhHhhhhccCCCCchhhhhc--CHHHHH
Confidence 999865542211110000 00000000000 00000000000000000001112123444444 443444
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 513 QLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
..+...+.++........++... ..+|.+. .......+....++....+ ...+++|||.....+..+..+++++.
T Consensus 323 ~~~~~~~~~~~~~~~y~gl~~~~-~~lg~~~---~~~~~~~~~~~~p~~~~~~-~~~~~~gR~~~~~~~~~~~~~~~~~~ 397 (521)
T KOG0255|consen 323 RTLYLLFIWFVFSLVYYGLSLNV-SGLGGNI---YLNFTLSGLVELPAYFRNG-LLLPEFGRRPPLFLSLFLAGIGLLLF 397 (521)
T ss_pred HHHHHHHHHHHHhHHHHhhhhhh-hhcCchH---HHHHHHHHHHHhhHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 44444444433332222222222 2233332 2333333445566666666 88999999999999999988888877
Q ss_pred cccc
Q 047440 593 FHVF 596 (619)
Q Consensus 593 ~~~~ 596 (619)
....
T Consensus 398 ~~~~ 401 (521)
T KOG0255|consen 398 GWLP 401 (521)
T ss_pred HHhh
Confidence 6655
No 99
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.7e-17 Score=158.58 Aligned_cols=265 Identities=17% Similarity=0.191 Sum_probs=209.4
Q ss_pred hhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHH
Q 047440 263 NTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l 341 (619)
..+.+.|.++.+.+++|+|.+..|+++++..+...+.+++..+++.|+|..+.+..++++. +|.++-.. .+.+.+
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~----~~~~~L 102 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL----GGLPLL 102 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc----ccHHHH
Confidence 4677889999999999999999999999999999999999999999999999988888765 77776665 467889
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHH
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVA 419 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~ 419 (619)
+.+-.+.|.|.+. ...++++-+.+| ++-+..+|++.+..++|..+++.++-.+..+.+ +|++ ...+.+..
T Consensus 103 ~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~--gW~~-----aL~~WAl~ 174 (395)
T COG2807 103 FLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSG--GWRG-----ALGFWALL 174 (395)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhc--cHHH-----HHHHHHHH
Confidence 9999999999888 888999999997 567999999999999999999999999976654 7877 55555555
Q ss_pred HHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcch
Q 047440 420 WLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSI 499 (619)
Q Consensus 420 ~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (619)
+++.+++ ++|...+.... .......+.
T Consensus 175 allAl~~---WlPq~~r~~~~--------------------------------------------------~~~~~~~~~ 201 (395)
T COG2807 175 ALLALLI---WLPQALREQAA--------------------------------------------------SIATKLVSV 201 (395)
T ss_pred HHHHHHH---Hhhhccccccc--------------------------------------------------ccccccccc
Confidence 5544443 33443221000 000111112
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhcc-chHHHH
Q 047440 500 RSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMF-EDRQIL 578 (619)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~-g~r~~l 578 (619)
..+++ +|..|.+.+.+.++++.++....|+|.++.+. |+|..++|.+.+...++.++.++... .+.+|. ++|...
T Consensus 202 ~~vw~--~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P-~la~R~~n~r~~~ 277 (395)
T COG2807 202 RKVWR--SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIP-LLARRSKNQRPLV 277 (395)
T ss_pred ccccc--CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhcccchHH
Confidence 23444 77788888899999999999999999999998 99999999999999999999999988 888865 455566
Q ss_pred HHHHHHHHHHHHhhcccc
Q 047440 579 LASEIMVCIGILFSFHVF 596 (619)
Q Consensus 579 ~~~~~~~~i~~~~~~~~~ 596 (619)
....+++.++++.+.+.+
T Consensus 278 ~~~~~~~l~G~~G~~~~P 295 (395)
T COG2807 278 VLALLLMLVGLVGLLLAP 295 (395)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666777777777665554
No 100
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.78 E-value=7.6e-22 Score=210.30 Aligned_cols=308 Identities=21% Similarity=0.255 Sum_probs=190.2
Q ss_pred HHHHHHhhhHhhccChHHHHH--HhCC---------ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 047440 256 NTFLYMVNTYIIVPTADDYSM--SLGA---------AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF- 323 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~--~~g~---------s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~- 323 (619)
+.+..+++........+.... ..+. +..+.+++.++..+|.++|++++|.++||+|||+.+..+.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~ 87 (451)
T PF00083_consen 8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI 87 (451)
T ss_pred HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 335566666555555444441 2222 2235789999999999999999999999999999998887765
Q ss_pred HHHHHHHHhhccC---cHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 324 IGNVMYALAYDFS---SIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 324 i~~~l~~~~~~~~---~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
++.++.+++ + +++.+.++|++.|++.|. +....++.|..|++.|+...++.+.+..+|.+++..++..+...
T Consensus 88 i~~~~~~~~---~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 88 IGSILIAFA---PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred ccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999998 7 999999999999999988 89999999999999999999999999999999988887666332
Q ss_pred ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCC
Q 047440 399 FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDG 478 (619)
Q Consensus 399 ~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (619)
.+.+.||+ .+++.++.+++ .++..+++||||+....+.+.++..... +. .+. . +..+++.
T Consensus 165 ~~~~~Wr~-----~~~~~~~~~l~-~~~~~~~~pESP~wL~~~~~~~~A~~~l------~~--~~~----~--~~~~~~~ 224 (451)
T PF00083_consen 165 SDNWGWRI-----LLIFGAIPSLL-VLLLRFFLPESPRWLLSKGRDEEAEKVL------RK--LRG----K--EIEDEEI 224 (451)
T ss_pred cccccccc-----ccccccccccc-ccccccccccccceeccccccccccccc------cc--ccc----c--ccccccc
Confidence 22234666 55555555444 3445578899998655422211111000 00 000 0 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHhc--CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhh
Q 047440 479 DQEYDGSDETSEESHPPANSIRSAYRLL--TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLT 556 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 556 (619)
+ +...+.+...+.+..++++++.. .+++...+...++..+.......++...+.+..|.+.. -......++.
T Consensus 225 ~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~ 298 (451)
T PF00083_consen 225 E----EIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLV 298 (451)
T ss_pred c----ccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 0 00000000001113344444321 23344444444444444433344444444444466655 1222233444
Q ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 557 VLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 557 ~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
..++.++.. +++||+|||++++.+..+++++.+.+.
T Consensus 299 ~~~~~~~~~-~~~~~~GRr~~~i~~~~~~~~~~~~~~ 334 (451)
T PF00083_consen 299 NFLGTLLAI-FLIDRFGRRKLLIIGLLLMAICSLILG 334 (451)
T ss_pred ccccccccc-ccccccccccccccccccccccccccc
Confidence 555555555 899999999999888887777766553
No 101
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.77 E-value=6e-17 Score=171.16 Aligned_cols=312 Identities=13% Similarity=0.065 Sum_probs=190.4
Q ss_pred hhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHH
Q 047440 263 NTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l 341 (619)
........++.+..++|-+ ...+|+.++..++..++.++.|+++|.||||.+++++.++. +|.++++.+ +|...+
T Consensus 59 ~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA---~~~~~~ 134 (599)
T PF06609_consen 59 VLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA---QNMNTF 134 (599)
T ss_pred HHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC---CcHHHH
Confidence 3444566678888899865 66889999999999999999999999999999998888776 999999999 999999
Q ss_pred HHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHH
Q 047440 342 LIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAW 420 (619)
Q Consensus 342 ~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~ 420 (619)
+++..+.|+|.|. ......++|..|.+.|+...++......+...+||.++..+.... +||| .|++.+++.
T Consensus 135 iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~---~WRw-----~~~~~~i~~ 206 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS---GWRW-----IFYIFIIWS 206 (599)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC---Ccch-----HHHHHHHHH
Confidence 9999999999888 666667899999999988887777666666667777777664432 8999 677777766
Q ss_pred HHHHHHHhhhccCCchhhhhhcccccc--CCCCCcc-------h-------hhhhc-C-CCCcccCCCCCCCCcCCCCCC
Q 047440 421 LFYLVWLCISFKEPSRDIEENHTQEES--NAEPVDN-------S-------ALEKG-L-QQPLLITSEEKPEDEDGDQEY 482 (619)
Q Consensus 421 ~~~~~~~~~~~pe~~~~~~~~~~~~~~--~~~~~~~-------~-------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 482 (619)
.+.++..+++...+++...+ .+.... ...+.+- . .+..+ . ..|+....---..--... .
T Consensus 207 ~i~~vl~~~fY~PP~~~~~~-~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~--~ 283 (599)
T PF06609_consen 207 GIALVLIFFFYFPPPRAQLH-GRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV--L 283 (599)
T ss_pred HHHHHHHHHHhCCCchhhhc-cccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH--H
Confidence 66655544443322221111 000000 0000000 0 00000 0 011100000000000000 0
Q ss_pred CCC-CCCCC--CCCCCCcchHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccch---hHHHHHHHhhh
Q 047440 483 DGS-DETSE--ESHPPANSIRSAYRLLT-PSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTG---AVAIFLACLGL 555 (619)
Q Consensus 483 ~~~-~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~~~~~~~ 555 (619)
... --.+. ..+.+-.+.+ +++ + +.+...+++.++....++....++|......++-++. ..++.....++
T Consensus 284 Lv~F~~wE~~~~~~~Pl~P~~-Lf~--~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~f 360 (599)
T PF06609_consen 284 LVAFVVWEWFGAPKDPLFPHR-LFK--DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGF 360 (599)
T ss_pred HHHHHHhhhhccCCCCcCCHH-Hhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHH
Confidence 000 00000 0011222222 222 3 3344445566666666777777888887777766553 46777777788
Q ss_pred hHHHHHHHHHHhhhhccchHHHH-HHHHHHHHHHHHhhc
Q 047440 556 TVLPVNIIVGSYISNMFEDRQIL-LASEIMVCIGILFSF 593 (619)
Q Consensus 556 ~~~~~~~~~g~~l~d~~g~r~~l-~~~~~~~~i~~~~~~ 593 (619)
+..++..+.+ .+..++++-+.. +++.+++.+++.++.
T Consensus 361 g~~~g~~i~g-~l~~~ir~~Kw~li~~~~~~ta~~Gama 398 (599)
T PF06609_consen 361 GSCAGAVILG-LLFSKIRHIKWQLIFGSVLMTAFCGAMA 398 (599)
T ss_pred HHHHHHHHHH-HHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence 8778888777 788877765544 466666665544443
No 102
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.77 E-value=1.6e-16 Score=165.82 Aligned_cols=301 Identities=13% Similarity=0.057 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcc----ccCchhHHHHH-HHHH-
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSN----RSYFKPLVFSS-IVLF- 323 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~Grr~~~~~~-~~~~- 323 (619)
++.+....+...+.+....+.++.|.+++|.+....+++..+..+..++.+|++|+++| |+|||+.++.+ .+..
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 34444555555667888888899999999999999999999999999999999999999 59999977554 4444
Q ss_pred HHHHHHHHhhccCcHH-----------------HHHHHHHHhhccCcc--hhhhhhhhccCccchh--hhHhHHHHHHHH
Q 047440 324 IGNVMYALAYDFSSIA-----------------VLLIGRLFCGFGSAR--AVNRRYISDCVPLKIR--MQASAGFVSASA 382 (619)
Q Consensus 324 i~~~l~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r--~~~~~~~~~~~~ 382 (619)
++.++++++ .+++ .++++-.+..++... +...++++|.+|+++| +.+.++.+.+.+
T Consensus 86 ~~l~ll~~~---~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 86 FAVILIGFA---ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHhC---chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence 566666665 3332 223333333445554 6778999999998865 579999999999
Q ss_pred HHhHHHHHHhhhhh--ccccc-----cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcch
Q 047440 383 LGMACGPALAGLLQ--TNFKI-----YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNS 455 (619)
Q Consensus 383 ~G~~~g~~i~~~l~--~~~~~-----~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~ 455 (619)
+|.++|+.+++++. ..++. .+.--..++..|++.+++.++..++..+..||.|.......
T Consensus 163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~------------- 229 (477)
T TIGR01301 163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF------------- 229 (477)
T ss_pred HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-------------
Confidence 99999999998762 11110 00000013558999888888888888889999764221100
Q ss_pred hhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc---CcchHHHHHHHHHHHHHHHHHhhchh
Q 047440 456 ALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL---TPSVKVQLLIYFMLKYVMEILLSESS 532 (619)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (619)
.++ +. + ..........++++++.+ -+.++.++++.++.+++...+..+.+
T Consensus 230 ------------------~~~----~~-~----~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T 282 (477)
T TIGR01301 230 ------------------INS----EA-A----PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDT 282 (477)
T ss_pred ------------------hhh----hc-c----cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000 00 0 000001112344444432 47788899999999999999988888
Q ss_pred hhhhh-cccccchh----------HHHHHHHhhhhHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHHHhhcc
Q 047440 533 VVTTY-YFGWSTGA----------VAIFLACLGLTVLPVNIIVGSYISNMFED-RQILLASEIMVCIGILFSFH 594 (619)
Q Consensus 533 ~~~~~-~~g~s~~~----------~g~~~~~~~~~~~~~~~~~g~~l~d~~g~-r~~l~~~~~~~~i~~~~~~~ 594 (619)
.|..+ .|+-++.. ..+.....++...+.+++.. ++.+++|+ |.+..++.++.+++++...+
T Consensus 283 ~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~-~l~~~~g~~k~~~~~s~~~~~~~l~~~~~ 355 (477)
T TIGR01301 283 DWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGME-KLCRGWGAGKRLWGIVNIILAICLAATVL 355 (477)
T ss_pred HHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 88764 45433211 12334445555556666777 88999985 67768887777777766553
No 103
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.1e-18 Score=167.58 Aligned_cols=325 Identities=14% Similarity=0.156 Sum_probs=205.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHh-C-------CccchhhHHHhhHHHHHHHHhhhhhhhccccCchhH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSL-G-------AAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPL 315 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~ 315 (619)
+++...+.+...+.|.+.++...++.+.|.+..-+ | .++...+.+..+..+|.++|++++|++.|++|||++
T Consensus 37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 55667778888888899999888888888877754 2 456678899999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHhhcc----CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHH
Q 047440 316 VFSSIVLF-IGNVMYALAYDF----SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACG 388 (619)
Q Consensus 316 ~~~~~~~~-i~~~l~~~~~~~----~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 388 (619)
+...++.. ++++++++.... .-.+++.+.|++.|+|.|+ |.+.+..+|....+.||..++.+.+..+.|.+.|
T Consensus 117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG 196 (538)
T KOG0252|consen 117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG 196 (538)
T ss_pred hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence 98887665 777766665221 3357889999999999999 9999999999999999999999888888888877
Q ss_pred HHHhhhhhc----ccc------ccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhh
Q 047440 389 PALAGLLQT----NFK------IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALE 458 (619)
Q Consensus 389 ~~i~~~l~~----~~~------~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (619)
.+++-.+.. .++ ...--| |..+.+.+ +..+..+..-+.+||+++...-.. .+...+.
T Consensus 197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vW---Rl~~glg~-vpa~~~ly~Rl~M~Et~~Y~al~~-------~~~~~a~-- 263 (538)
T KOG0252|consen 197 GIVALIVSAIFEKIFNGPSTYPHLDGVW---RIIFGLGA-VPALLVLYFRLKMPETARYTALVS-------KKLKQAA-- 263 (538)
T ss_pred cHHHHHHHHHHhccCCCCCCchHHHHHH---HHHHHHHH-HHHHHHHHhhhcCCcchhHHHHhh-------cCHhhhh--
Confidence 777666521 111 011223 33554444 445555555667899887542100 0000000
Q ss_pred hcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc----CcchHHHHHHHHHHHHHHHHHhhchhhh
Q 047440 459 KGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL----TPSVKVQLLIYFMLKYVMEILLSESSVV 534 (619)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (619)
....+.+ ..+.+ +++........+.+.+....+.+ -+.++..+..+|+.-.+++....+....
T Consensus 264 ~d~~k~~---------~~~~~----~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I 330 (538)
T KOG0252|consen 264 GDMKKVL---------SVDIE----AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVI 330 (538)
T ss_pred hcccccc---------ccccc----hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHH
Confidence 0001110 00000 00000111111222222111111 2455566666777777777666555555
Q ss_pred hhhcccccchhHHH--------HHHHh-hhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 535 TTYYFGWSTGAVAI--------FLACL-GLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 535 ~~~~~g~s~~~~g~--------~~~~~-~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
++.. |+.+..... ...+. ....+++.++.. .++|++||+.+.+.|++++++..+++....
T Consensus 331 ~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv-~~id~iGRk~iq~~GF~~~~i~~~~~~~~y 399 (538)
T KOG0252|consen 331 FSAI-GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTV-YFIDIIGRKYIQLMGFFIMTIFFFVIAGPY 399 (538)
T ss_pred HHhh-ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEE-EEeehhhhHHHHHhhHHHHHHHHHHHcCCc
Confidence 5543 665443322 11111 222233455555 788999999999999999988887776544
No 104
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.73 E-value=1.2e-15 Score=163.39 Aligned_cols=164 Identities=12% Similarity=0.072 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH-HH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVLF-IG 325 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~~-i~ 325 (619)
.++.+++..+...++++...+.++.+. +++|.+..+.+++.+.+........+++|+++|| +|||++++.+.+.. ++
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 455666677777777777777888887 5699999999999888877767777899999999 59999988887665 77
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccch--hhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 326 NVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKI--RMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
.++++++ .++.+.+++++++.|+|.|. +...+++++++|+++ |+.++++++++.++|.++||++++++.+.+
T Consensus 102 ~~l~~~~--~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-- 177 (500)
T PRK09584 102 YALVAWS--GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-- 177 (500)
T ss_pred HHHHHHh--cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 7777765 13456777889999999887 777899999997643 556889999999999999999999997765
Q ss_pred cceeccccchhHHHHHHHHHH
Q 047440 402 YKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~ 422 (619)
+|+| .|++.++..++
T Consensus 178 -g~~~-----~F~i~~i~~~i 192 (500)
T PRK09584 178 -GWSV-----AFALSVVGMLI 192 (500)
T ss_pred -CHHH-----HHHHHHHHHHH
Confidence 6766 77776654333
No 105
>PTZ00207 hypothetical protein; Provisional
Probab=99.72 E-value=8.7e-16 Score=163.58 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=135.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
..+|..+........+.+. .+.+..+.|.+.+++|++..+++++.++. ....+++++.|+++||+|+|++++++.++.
T Consensus 24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~ 101 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF 101 (591)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4456555544444444332 33445667778899999999999998874 344567888999999999999998887765
Q ss_pred -HHHHHHHHhhc---cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHH-HHHHhhhhh
Q 047440 324 -IGNVMYALAYD---FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMAC-GPALAGLLQ 396 (619)
Q Consensus 324 -i~~~l~~~~~~---~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-g~~i~~~l~ 396 (619)
++.++++++.. ..+++.+++.|++.|+|.+. +.+...+.+++| ++||+++|+...+.++|.++ +++..+++.
T Consensus 102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887622 15899999999999999876 777888899996 78999999999999999975 555555554
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
. +|++ .|++.+++.++..++.+++++++|.
T Consensus 181 ~-----~~~~-----~fl~l~vl~~vv~ll~~~~vr~p~~ 210 (591)
T PTZ00207 181 D-----NTSA-----YFFFLMSFALVVGILAIVFMRLPPF 210 (591)
T ss_pred H-----hHHH-----HHHHHHHHHHHHHHHHHhheeCCcc
Confidence 2 3333 6777777777777777777776653
No 106
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.71 E-value=1.3e-15 Score=162.82 Aligned_cols=286 Identities=10% Similarity=0.017 Sum_probs=178.0
Q ss_pred HHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhcc----ccCc-hhHHHHHHHHH-HHHH
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSN----RSYF-KPLVFSSIVLF-IGNV 327 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~Gr-r~~~~~~~~~~-i~~~ 327 (619)
++.+...+....+.+.++.|..+ +|+++..+|.+.++..+..++..|++|.++| |+|| |+.++.+.+.. ++.+
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence 34444445555666666666666 6999999999999999999999999999999 5698 55666666554 5544
Q ss_pred HHHHhhcc-C--cHHHHHHHHHHhhccCcc--hhhhhhhhccC-ccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 328 MYALAYDF-S--SIAVLLIGRLFCGFGSAR--AVNRRYISDCV-PLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 328 l~~~~~~~-~--~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
++...+.. + .++.+++..++.+++.+. +...++++|+. ++++|.+..++...+.++|..+++.+...+....+.
T Consensus 93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 172 (473)
T PRK10429 93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG 172 (473)
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44332111 1 233455555666666655 67778889988 689999999987777777766665554433221110
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
.+ ....|....++.+++.++..++.++..||.+.....
T Consensus 173 ~~-~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~----------------------------------------- 210 (473)
T PRK10429 173 GD-RGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQ----------------------------------------- 210 (473)
T ss_pred Cc-hhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccc-----------------------------------------
Confidence 00 000012244555555555555555556664321110
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhc--CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHH
Q 047440 482 YDGSDETSEESHPPANSIRSAYRLL--TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLP 559 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 559 (619)
+ ...+.+.++++.++.. +++++..++..++............+.|.....+ +....+.+.++.+++.++
T Consensus 211 ----~----~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii 281 (473)
T PRK10429 211 ----V----SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLV 281 (473)
T ss_pred ----c----cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHH
Confidence 0 0001112233433321 6777777777777777666666666656555534 555667777776778888
Q ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 560 VNIIVGSYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 560 ~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
+.++.+ ++.||+|+|+.+.++.++.+++.+.+
T Consensus 282 ~~~~~~-~l~~r~gkk~~~~~~~~~~~~~~~~~ 313 (473)
T PRK10429 282 TLILFP-RLVKSLSRRILWAGASIFPVLSCGVL 313 (473)
T ss_pred HHHHHH-HHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 888888 99999999999888877666555443
No 107
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.71 E-value=4.3e-16 Score=164.56 Aligned_cols=287 Identities=16% Similarity=0.184 Sum_probs=203.8
Q ss_pred HHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcc----ccCchh-HHHHHHHH-HHHHHHHHHhhc-c----CcHHH
Q 047440 272 DDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSN----RSYFKP-LVFSSIVL-FIGNVMYALAYD-F----SSIAV 340 (619)
Q Consensus 272 ~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~Grr~-~~~~~~~~-~i~~~l~~~~~~-~----~~~~~ 340 (619)
+.+.+.+|+++..+|++..+..+..++..|+.|.++| |+|||+ .++.+.+. .++.+++...++ . .....
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~ 105 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW 105 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence 3344557999999999999999999999999999999 689766 44555544 465555554412 1 12334
Q ss_pred HHHHHHHhhccCcc--hhhhhhhhccCc-cchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc----cceeccccchhH
Q 047440 341 LLIGRLFCGFGSAR--AVNRRYISDCVP-LKIRMQASAGFVSASALGMACGPALAGLLQTNFKI----YKLTFNQNTLPG 413 (619)
Q Consensus 341 l~~~r~l~G~~~~~--~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~----~~w~w~~~~~~~ 413 (619)
+++..++..++... ....++.+|+.+ +++|.+..+.-..+..+|.++...+.+.+....+. .+|+| ..
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~-----~~ 180 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRW-----MA 180 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHH-----HH
Confidence 56666667777776 677899999996 57899999999888888887777776666443321 14555 67
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 047440 414 WIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESH 493 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (619)
++.+++.++..++..+..+|.++.... .....
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~~~~~------------------------------------------------~~~~~ 212 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSVEVTE------------------------------------------------QEKKI 212 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccccccc------------------------------------------------ccccc
Confidence 777888788888888888882211111 00111
Q ss_pred CCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccc
Q 047440 494 PPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFE 573 (619)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g 573 (619)
+....++.+++ +|+++..++..++..++........+.|.+...|.+ ...+.+..+..++++++.++.+ +++||+|
T Consensus 213 ~~~~~~~~~~~--nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~-~l~~r~g 288 (428)
T PF13347_consen 213 SLRDSLRSLFR--NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWG-RLSKRFG 288 (428)
T ss_pred ccccchhhhcc--cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHH-HHHHHcc
Confidence 22334555555 788888888888888888888888888888887766 5567777777888888888887 9999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhhccc
Q 047440 574 DRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAE 616 (619)
Q Consensus 574 ~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 616 (619)
+|+.+..+.++.+++.+++...+. .+.+.+++..++.+++.+
T Consensus 289 k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi~~~ 330 (428)
T PF13347_consen 289 KKKVYIIGLLLAALGFLLLFFLGP-GSPWLVLILFILAGIGYG 330 (428)
T ss_pred ceeehhhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhHhhhc
Confidence 999999999888888877665541 244555555555555544
No 108
>PRK09669 putative symporter YagG; Provisional
Probab=99.70 E-value=2.8e-15 Score=159.13 Aligned_cols=266 Identities=10% Similarity=0.034 Sum_probs=162.6
Q ss_pred hhccChHH-HHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc----cCch-hHHHHHHHHH-HHHHHHHHhhc---c
Q 047440 266 IIVPTADD-YSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR----SYFK-PLVFSSIVLF-IGNVMYALAYD---F 335 (619)
Q Consensus 266 ~~~~~~~~-~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~Grr-~~~~~~~~~~-i~~~l~~~~~~---~ 335 (619)
.....++. +.+.+|+++..+|.+.++..+..++..|+.|+++|| +||| +.++.+.+.. ++.++....+. .
T Consensus 27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 33334444 445589999999999999999999999999999999 7774 5555554433 55444433321 1
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccC-ccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc----ccceeccc
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCV-PLKIRMQASAGFVSASALGMACGPALAGLLQTNFK----IYKLTFNQ 408 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~----~~~w~w~~ 408 (619)
..++.+++..++.+++.+. ....++.+|+. ++++|++..++...+..+|..+++.++..+....+ ..+|++
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~-- 184 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY-- 184 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH--
Confidence 2245555666666655444 56668889987 66889999898888888888888776655533221 012333
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCC
Q 047440 409 NTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDET 488 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (619)
.+.+.+++.++..++.++..+|.+.+...
T Consensus 185 ---~~~i~~ii~~v~~~~~~~~~~e~~~~~~~------------------------------------------------ 213 (444)
T PRK09669 185 ---AMMVMGLLGVVLFFCCFFMTKERYTPEVD------------------------------------------------ 213 (444)
T ss_pred ---HHHHHHHHHHHHHHHHhCCeEEecCCCCc------------------------------------------------
Confidence 56666666666555555555553211000
Q ss_pred CCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhh
Q 047440 489 SEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYI 568 (619)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l 568 (619)
...+....++..++ +++++..++..++...+........+.|.....+ ++...+.+.....+..+++.++.+ ++
T Consensus 214 --~~~~~~~~~~~~~~--n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~-~l 287 (444)
T PRK09669 214 --NSSSVWKDLKLLLG--NSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSE-RL 287 (444)
T ss_pred --CCCCHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 00011122333333 6777777666666555554444444444444433 233334444444566666666666 99
Q ss_pred hhccchHHHHHHHHHHHHHHHH
Q 047440 569 SNMFEDRQILLASEIMVCIGIL 590 (619)
Q Consensus 569 ~d~~g~r~~l~~~~~~~~i~~~ 590 (619)
+||+|+|+.+.++.++.+++.+
T Consensus 288 ~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 288 LGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHhChHHHHHHHHHHHHHHHH
Confidence 9999999998887766554433
No 109
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.69 E-value=6.4e-15 Score=150.43 Aligned_cols=318 Identities=14% Similarity=0.096 Sum_probs=219.1
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccc----cCchh-HHHHHH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR----SYFKP-LVFSSI 320 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~Grr~-~~~~~~ 320 (619)
++.-+.-.++.+...+........+..+..+ +|+++..+|.+..+.-+--++..|+.|.++|| +||++ -++.+.
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ 90 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA 90 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence 3333444445555555555555555556665 89999999999999999999999999999997 77654 555555
Q ss_pred H-HHHHHHHHHHhhc---cCcHHHHHHHHHHhhccCcc--hhhhhhhhccC-ccchhhhHhHHHHHHHHHHhHHHHHHhh
Q 047440 321 V-LFIGNVMYALAYD---FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCV-PLKIRMQASAGFVSASALGMACGPALAG 393 (619)
Q Consensus 321 ~-~~i~~~l~~~~~~---~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~ 393 (619)
+ ..+.+.++..++. ..+....++...+.|++... ..-.++.+++. ++++|.+..++-..+..+|..+...+..
T Consensus 91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~ 170 (467)
T COG2211 91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFP 170 (467)
T ss_pred HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4466666666632 13455566677788888777 56667777776 5789999999999888888776666555
Q ss_pred hhhcccccc--ceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCC
Q 047440 394 LLQTNFKIY--KLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEE 471 (619)
Q Consensus 394 ~l~~~~~~~--~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (619)
.+....+.. .+. |+...++.+++.++..+++++..+|.+.+...
T Consensus 171 plv~~~g~~~~~~g---~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~------------------------------- 216 (467)
T COG2211 171 PLVKLFGGGDKALG---YQGTALVLGVIGVILLLFCFFNVKERVVETQP------------------------------- 216 (467)
T ss_pred HHHHHhCCCcchhh---HHHHHHHHHHHHHHHHHHHHHHhhcccCcccc-------------------------------
Confidence 553322211 122 24466777777777778888877776652221
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHH
Q 047440 472 KPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLA 551 (619)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 551 (619)
.+.....+....+..+++ +++++..++..++...+.....+....|.+...|.+.....+.+.
T Consensus 217 ---------------~~~~~~~~~~~~~~~~~~--Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~ 279 (467)
T COG2211 217 ---------------TKTGVKLKLKDSFLLIFK--NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLL 279 (467)
T ss_pred ---------------CcccccccHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHH
Confidence 000001111122233444 788888888777777777888888888888888888888888877
Q ss_pred HhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhhcccc
Q 047440 552 CLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEV 617 (619)
Q Consensus 552 ~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~ 617 (619)
..+.+.+++.++.. ++++|+|+|+++.++.++.+++.+++.+.+ ..+.+..++..++..+|.++
T Consensus 280 ~~~~~~l~~~~~~p-~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-~~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 280 ASGAGLLIGLILWP-RLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-AGSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred HHHHHHHHHHHhHH-HHHHHhchHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhc
Confidence 77777776677777 999999999999999999999998887776 44455555555665565543
No 110
>PRK09848 glucuronide transporter; Provisional
Probab=99.68 E-value=5e-15 Score=157.50 Aligned_cols=281 Identities=11% Similarity=0.046 Sum_probs=167.3
Q ss_pred HHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhcccc----Cchh-HHHHHHH-HHHHHH
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS----YFKP-LVFSSIV-LFIGNV 327 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~----Grr~-~~~~~~~-~~i~~~ 327 (619)
++.+...+..++..+.++.|..+ +|+++.++|.+.++..+..++..+++|+++||. |||+ .++.+.+ ..+..+
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 44444455555555555556665 699999999999999999999999999999995 6665 4344443 333333
Q ss_pred HHHHhhcc--C--cHHHHHHHHHHhhccCcc--hhhhhhhhccC-ccchhhhHhHHHHHH-----HHHHhHHHHHHhhhh
Q 047440 328 MYALAYDF--S--SIAVLLIGRLFCGFGSAR--AVNRRYISDCV-PLKIRMQASAGFVSA-----SALGMACGPALAGLL 395 (619)
Q Consensus 328 l~~~~~~~--~--~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~-~~~~r~~~~~~~~~~-----~~~G~~~g~~i~~~l 395 (619)
+....+.. . ..+.+++..++.+++.+. +...++..+.. ++++|.+..++-..+ ..+|.+++|.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 95 LVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 32211100 1 223344445566776666 55556666655 457788876665443 335555666666543
Q ss_pred hccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCC
Q 047440 396 QTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPED 475 (619)
Q Consensus 396 ~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (619)
.... ...| .....+.+++.++..++.+...||++....+
T Consensus 175 g~~~---~~~~---~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~----------------------------------- 213 (448)
T PRK09848 175 PEEM---VSVY---HFWTIVLAIAGMVLYFICFKSTRENVVRIVA----------------------------------- 213 (448)
T ss_pred CCch---hhhH---HHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-----------------------------------
Confidence 2111 0011 0011222333333333333344544221000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhh
Q 047440 476 EDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGL 555 (619)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 555 (619)
+......++.+++ +++++..+++.++...+........|.|+++.+|.+....++......+
T Consensus 214 ----------------~~~~~~~~~~l~~--n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 275 (448)
T PRK09848 214 ----------------QPSLKISLQTLKR--NRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLV 275 (448)
T ss_pred ----------------CCCHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHH
Confidence 0011122333443 7888777777777777777777778888888888776655555554455
Q ss_pred hHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhccc
Q 047440 556 TVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 556 ~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
+.+++.++.+ ++.+|+|+|+.+.++.++.+++++++...
T Consensus 276 ~~~~~~~l~~-~l~~r~g~~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 276 GTVASAPLVP-GMVARIGKKNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred HHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 6666777777 99999999999999988888777665543
No 111
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.66 E-value=1.4e-14 Score=146.71 Aligned_cols=288 Identities=16% Similarity=0.193 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchh-HH-HHHHHHH-HHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKP-LV-FSSIVLF-IGN 326 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~-~~-~~~~~~~-i~~ 326 (619)
+......+...+..++..|..|.+.++ .|++++++|.+.++..+..++.+|+.|.++||.|.|+ ++ .++.+.. .+.
T Consensus 10 ~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~p 89 (412)
T PF01306_consen 10 WWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGP 89 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence 334445555666688899999999986 8999999999999999999999999999999999655 33 2233322 222
Q ss_pred -HHHHHhhc-cCcHH-HHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 327 -VMYALAYD-FSSIA-VLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 327 -~l~~~~~~-~~~~~-~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
+...+.+. ..|.+ ..+++-+..|++... ++.-+++.++. ++.+.-.|-..+.+++|.+++..++|.+....+
T Consensus 90 ff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p- 166 (412)
T PF01306_consen 90 FFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINP- 166 (412)
T ss_dssp HHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc-
Confidence 22222211 13332 223333333443333 66666666554 455667788899999999999999999954321
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCC
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQE 481 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (619)
...||+..+.+++..++.++..|+.++....
T Consensus 167 --------~~~fwi~s~~~~il~lll~~~~~~~~~~~~~----------------------------------------- 197 (412)
T PF01306_consen 167 --------NIIFWIASAAAIILLLLLLLLKPDVPPQAEV----------------------------------------- 197 (412)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHSS---SSSSS-S-----------------------------------------
T ss_pred --------cHHHHHHHHHHHHHHHHHHHcCCcCchhhhh-----------------------------------------
Confidence 3367776665555555544444444332111
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcc---cccchhHHHHHHHhhhhH
Q 047440 482 YDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYF---GWSTGAVAIFLACLGLTV 557 (619)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~~~~~~~~ 557 (619)
.+....++...+.+++.+.+ .|++|.+++........+..+...++.|....+ +.+....|++.++..+..
T Consensus 198 -----~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E 272 (412)
T PF01306_consen 198 -----ADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLE 272 (412)
T ss_dssp -----STTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred -----hcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHH
Confidence 00001112233456666665 577777666666555666666666666666543 345566788888877888
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
++...+.. ++.+|+|.|+.++++.+++++=.+.....+
T Consensus 273 ~~~m~~~p-~li~rig~k~~Lllag~i~~iRi~~~~~~~ 310 (412)
T PF01306_consen 273 ALMMFFSP-WLINRIGAKNLLLLAGVIMAIRIIGSGFAT 310 (412)
T ss_dssp HHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHH-HHHHhcChHhHHHHHHHHHHHHHHHHhhhc
Confidence 87777777 999999999999999888888877766655
No 112
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.63 E-value=7.9e-16 Score=142.17 Aligned_cols=271 Identities=14% Similarity=0.111 Sum_probs=181.0
Q ss_pred hhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchh-HHHHHHHHHHHHHHHHHhhccCcHHHHHH
Q 047440 266 IIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKP-LVFSSIVLFIGNVMYALAYDFSSIAVLLI 343 (619)
Q Consensus 266 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 343 (619)
.....-..+..+.+++.++..++.++|.....+...++|++.|| +|-|. .++.+++..+|-++++.....+.+|.+.+
T Consensus 62 ~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~ 141 (459)
T KOG4686|consen 62 APGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLA 141 (459)
T ss_pred CchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence 33333344455678888899999999999999999999999998 88776 44555555677777665433389999999
Q ss_pred HHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhH---HHHHH
Q 047440 344 GRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPG---WIMAV 418 (619)
Q Consensus 344 ~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~---~~~~~ 418 (619)
+||+.|+|+-. .+-..|+.-|+..++.+.++|+......+|+.+--.+.+++.+..+ ..--..-.... ...+.
T Consensus 142 GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~--~~~~~~ghT~LG~~l~~~~ 219 (459)
T KOG4686|consen 142 GRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG--RMFPGVGHTLLGLWLCFEV 219 (459)
T ss_pred hheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH--HhcccchHHHHHHHHHHHH
Confidence 99999999766 6667999999999999999999999999998877666666644322 00000000000 00111
Q ss_pred HHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcc
Q 047440 419 AWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANS 498 (619)
Q Consensus 419 ~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (619)
..+...++....+--+....++... .+++. ..+..+....++
T Consensus 220 ~tc~~slical~lg~~D~rAerilh-------------~e~g~-------------------------~Ge~pkLtdv~~ 261 (459)
T KOG4686|consen 220 KTCKQSLICALSLGLSDDRAERILH-------------LEEGF-------------------------LGEEPKLTDVNT 261 (459)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHh-------------hhcCc-------------------------ccCCcccccccc
Confidence 1111111111111101000010000 00000 000001111112
Q ss_pred hHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHH
Q 047440 499 IRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQIL 578 (619)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l 578 (619)
+ .+++|.+.+++++...+..-+.+..|.++++++|+|+..++.+.+.....+++...+.| .++||.|+...+
T Consensus 262 f-------~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg-~i~Dk~G~n~~w 333 (459)
T KOG4686|consen 262 F-------YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFG-AISDKYGFNLWW 333 (459)
T ss_pred c-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHH-HhHhhhcceehh
Confidence 2 78999999999999999999999999999999999999999998888888888899989 999999998777
Q ss_pred HHHHHH
Q 047440 579 LASEIM 584 (619)
Q Consensus 579 ~~~~~~ 584 (619)
+.+..+
T Consensus 334 v~~a~~ 339 (459)
T KOG4686|consen 334 VASACI 339 (459)
T ss_pred HHHHHH
Confidence 655433
No 113
>PRK11462 putative transporter; Provisional
Probab=99.63 E-value=5.5e-14 Score=149.26 Aligned_cols=267 Identities=10% Similarity=-0.011 Sum_probs=163.0
Q ss_pred HhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccc----cCchh-HHHHHHH-HHHHHHHHHHhh
Q 047440 261 MVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR----SYFKP-LVFSSIV-LFIGNVMYALAY 333 (619)
Q Consensus 261 ~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~Grr~-~~~~~~~-~~i~~~l~~~~~ 333 (619)
.+...+....+..+.. .+|+++..+|.+..+.-+.-++..|+.|.++|| +|||+ .++.+.+ ..++.+++...+
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p 101 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP 101 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence 3333444444444444 489999999999999999999999999999997 78765 4555544 345555544432
Q ss_pred cc---CcHHHHHHHHHHhhccCcc--hhhhhhhhccCc-cchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc----cc
Q 047440 334 DF---SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVP-LKIRMQASAGFVSASALGMACGPALAGLLQTNFKI----YK 403 (619)
Q Consensus 334 ~~---~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~----~~ 403 (619)
.. ..+..+++..++..++... ....++.+|+.+ +++|++..++...+..+|..+++.+...+....+. .+
T Consensus 102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g 181 (460)
T PRK11462 102 DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG 181 (460)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 10 1134455555666776666 666678888875 78999999999999999988887776655332220 12
Q ss_pred eeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCC
Q 047440 404 LTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYD 483 (619)
Q Consensus 404 w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (619)
|.+ ...+.+++.+++.+++++..+|.+.....
T Consensus 182 ~~~-----~~~i~~ii~~i~~~i~~~~~kE~~~~~~~------------------------------------------- 213 (460)
T PRK11462 182 FQG-----GIAVLSVVAFMMLAFCFFTTKERVEAPPT------------------------------------------- 213 (460)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHhcceeccCCCcc-------------------------------------------
Confidence 222 44455555455554554444543221000
Q ss_pred CCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHH
Q 047440 484 GSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNII 563 (619)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 563 (619)
+.+.+..++..++ +++++..+...++..............|....+|. ....+.++.+.+++++++..+
T Consensus 214 --------~~~~~~~l~~~~~--Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l 282 (460)
T PRK11462 214 --------TTSMREDLRDIWQ--NDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSAL 282 (460)
T ss_pred --------CCCHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHH
Confidence 0011122333333 66666665555555555444444444555544443 334455666777777778777
Q ss_pred HHHhhhhccchHHHHHHHHHHHHH
Q 047440 564 VGSYISNMFEDRQILLASEIMVCI 587 (619)
Q Consensus 564 ~g~~l~d~~g~r~~l~~~~~~~~i 587 (619)
.+ ++.||+++|+.+..+..+.++
T Consensus 283 ~~-~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 283 AK-PLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HH-HHHHHhChHHHHHHHHHHHHH
Confidence 77 999999999887655444333
No 114
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.63 E-value=7.3e-14 Score=146.58 Aligned_cols=165 Identities=12% Similarity=0.044 Sum_probs=126.6
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhcccc-CchhHHHHHHHHH
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS-YFKPLVFSSIVLF 323 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-Grr~~~~~~~~~~ 323 (619)
+.+.+..++...+...+.++.....+|.+..+ +|.+..+.+.+.+.+.+...++++++|+++||+ |||++++.+.+..
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 34456666667777777788888888888764 899999999999999999999999999999998 9999887777665
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccc--hhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLK--IRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
++.++++... .+...++++..+.++|.|. +...++++|.+|++ +|..++++.+.+.++|..++|.+.+++.+.
T Consensus 87 ~lg~lll~~~~--~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~ 164 (493)
T PRK15462 87 AIGHVVLGASE--IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE 164 (493)
T ss_pred HHHHHHHHHhh--cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666555430 1223334343344455554 66788999999875 799999999999999999999999999776
Q ss_pred ccccceeccccchhHHHHHHHH
Q 047440 399 FKIYKLTFNQNTLPGWIMAVAW 420 (619)
Q Consensus 399 ~~~~~w~w~~~~~~~~~~~~~~ 420 (619)
. +|++ .|.+.++..
T Consensus 165 ~---Gw~~-----~F~iaaigm 178 (493)
T PRK15462 165 Y---SWAM-----GFGLAAVGM 178 (493)
T ss_pred h---ChHH-----HHHHHHHHH
Confidence 5 5666 777765543
No 115
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.63 E-value=1.2e-13 Score=142.73 Aligned_cols=279 Identities=19% Similarity=0.175 Sum_probs=194.0
Q ss_pred HHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccC-chhHHHHHHHHH-HHHHHHHHh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY-FKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G-rr~~~~~~~~~~-i~~~l~~~~ 332 (619)
...++..+..+...|.+|.+.++.|.|..++|.+.++..+..+++++++|.++||.+ +|+++.+..+.. +..++....
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~ 88 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566777889999999999999999999999999999999999999999976 456665554443 544555555
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHh-hhhhccccccceecccc
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA-GLLQTNFKIYKLTFNQN 409 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~-~~l~~~~~~~~w~w~~~ 409 (619)
++++.+++.-++..+.... |...++..+... +++.-.|-....+++|.+++.... +++.... ++.. .
T Consensus 89 ---~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~---~~~~--~ 158 (400)
T PF03825_consen 89 ---SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYL---GISG--T 158 (400)
T ss_pred ---ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhh---cccc--c
Confidence 7888888887777776554 666666666654 456677788888888888875542 2232211 1111 1
Q ss_pred chhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCC
Q 047440 410 TLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETS 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (619)
..++++.+++.++.... .+.+|+.|+++..
T Consensus 159 ~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~------------------------------------------------- 188 (400)
T PF03825_consen 159 SLIFYIAAILSLLLAGF-ALFLPKTPPKRSA------------------------------------------------- 188 (400)
T ss_pred cHHHHHHHHHHHHHHHH-HHhCCCCcccccc-------------------------------------------------
Confidence 22455555544333322 3456776632211
Q ss_pred CCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhh
Q 047440 490 EESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYI 568 (619)
Q Consensus 490 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l 568 (619)
... ......++.++++ +|+++..++..++...+...+.++.+.|+++.-|.+....|.+.++..+..++.-.+.+ ++
T Consensus 189 ~~~-~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~-~~ 266 (400)
T PF03825_consen 189 KES-VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSG-RF 266 (400)
T ss_pred CCC-cccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 000 0011112223333 78888888888888888888889999999988447788888888887788887777777 99
Q ss_pred hhccchHHHHHHHHHHHHHHHHhhccc
Q 047440 569 SNMFEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 569 ~d~~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
.+|+|.++++.++++..++=..++...
T Consensus 267 ~~r~g~~~ll~~a~~~~~vR~~l~a~~ 293 (400)
T PF03825_consen 267 LKRFGIKWLLLLALVAYAVRWLLYAYF 293 (400)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888887776655
No 116
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.60 E-value=7.9e-14 Score=148.14 Aligned_cols=294 Identities=13% Similarity=-0.013 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccC-----chhHHHHHHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY-----FKPLVFSSIVLF 323 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G-----rr~~~~~~~~~~ 323 (619)
+.++...++..++. +.....++.+.+ ++|++.++++.+.++..++..+-.+ +|+++||++ ||+.++++.++.
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 34444566666766 554444444554 6999999999999999999988655 999999987 666665554433
Q ss_pred HHHHHHHHhhccCc-HHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhH---hHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 324 IGNVMYALAYDFSS-IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQA---SAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 324 i~~~l~~~~~~~~~-~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
....+..++.. ++ .....+..++.+++.+. +++-+++.|..+ ++++.. .+....+.++|.++|+.++|.+.+
T Consensus 106 ~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 106 SAILYGLLPGK-VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222211 34 33444478888998888 888999999998 555443 334444456899999999999977
Q ss_pred cccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcC
Q 047440 398 NFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDED 477 (619)
Q Consensus 398 ~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (619)
.+ +|++ .|++.+++.++. ++..+++||++.....+ + .+.
T Consensus 184 ~~---~~~~-----~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~----------------------~---------~~~- 222 (468)
T TIGR00788 184 KT---LTRI-----LFLITAALLLLQ-LFVSNLSKERRAFVRPR----------------------I---------GTY- 222 (468)
T ss_pred hc---Ccch-----HHHHHHHHHHHH-HHHHHhccccccccccc----------------------c---------ccc-
Confidence 65 4555 788887776666 44456677764210000 0 000
Q ss_pred CCCCCCCCCCCCCC-CCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhh
Q 047440 478 GDQEYDGSDETSEE-SHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGL 555 (619)
Q Consensus 478 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 555 (619)
+.......... .......++++++.+ +|.++..++..++......+.....-.+..+..|+++...|++..+.++
T Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v 299 (468)
T TIGR00788 223 ---LEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNL 299 (468)
T ss_pred ---chhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHH
Confidence 00000000000 000112233444443 4555544444444122111111111113345679999999999999999
Q ss_pred hHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 556 TVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 556 ~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
+.+++..+.+ ++.+|++.|+++.++.++.+++.+..
T Consensus 300 ~~i~g~~~~~-~~~~~~~~r~~l~~~~~l~~~~~~~~ 335 (468)
T TIGR00788 300 GSLCGVGGYD-RFLKTFPYRLLFGVTTLLYTLSSLFD 335 (468)
T ss_pred HHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHhCc
Confidence 9999999988 78899999999999988888876543
No 117
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.59 E-value=3e-13 Score=140.64 Aligned_cols=255 Identities=15% Similarity=0.184 Sum_probs=182.2
Q ss_pred HHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc----hhhhhhhhccCc
Q 047440 292 MAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR----AVNRRYISDCVP 366 (619)
Q Consensus 292 ~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~----~~~~~~i~~~~~ 366 (619)
..+..++.++..|.++||+|||..+...++.. +..++..+. .+|.++ +.|+.++. ....++++|...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----~~~~~~----~~~l~g~~~~~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----GYWFFL----LLGLSGGFSAIFSVGFAYVADISS 142 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----HHHHhh----hcccccchhhhhhhhhhheeeccc
Confidence 36788899999999999999999999888876 555555554 344433 55554443 788899999999
Q ss_pred cchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccc
Q 047440 367 LKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEE 446 (619)
Q Consensus 367 ~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~ 446 (619)
.++|...+|+.......|..+||.+++.+....+ +..+|++..+..++..+..++++||+..+.....
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~--------~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~---- 210 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG--------IALVFLIAAASGILSLLYMLLFLPESLQEKERSD---- 210 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHhhccccccCcccccc----
Confidence 9999999999999999999999999999966554 5678999999999999999999999876544310
Q ss_pred cCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHH-
Q 047440 447 SNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVM- 524 (619)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 524 (619)
...+. ..............+....+.. +|..+.++...++.....
T Consensus 211 -------------~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~ 257 (463)
T KOG2816|consen 211 -------------ATLRE--------------------LTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEA 257 (463)
T ss_pred -------------ccccc--------------------cCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHh
Confidence 00000 0000000001111111111111 334444444444433333
Q ss_pred HHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhccccccc
Q 047440 525 EILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPY 599 (619)
Q Consensus 525 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~~~~ 599 (619)
.......+.|+...+||+..+.+.+.+..++...+++.+..+.+...+|.++++..|+....++.++..+....|
T Consensus 258 ~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w 332 (463)
T KOG2816|consen 258 GGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETW 332 (463)
T ss_pred cCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccch
Confidence 333325578899999999999999999999999999999887889999999988899999999888888776333
No 118
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.58 E-value=6.4e-13 Score=132.04 Aligned_cols=290 Identities=14% Similarity=0.115 Sum_probs=196.1
Q ss_pred HHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccC-----chh-HHHHHHHHH-HHHHHHHHhhc--cC-------c
Q 047440 274 YSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY-----FKP-LVFSSIVLF-IGNVMYALAYD--FS-------S 337 (619)
Q Consensus 274 ~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G-----rr~-~~~~~~~~~-i~~~l~~~~~~--~~-------~ 337 (619)
+..|++++....+.+.++..+... ..+.+|+.+|+.+ ||. .++.+.+.. .+..+..++.. .. +
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 567899999999999888887655 6999999999987 665 445555443 44444444310 01 2
Q ss_pred --HH--HHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccch
Q 047440 338 --IA--VLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTL 411 (619)
Q Consensus 338 --~~--~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~ 411 (619)
.+ ...++.++.|+|.+. +...++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+. .-|. ..
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s--~~rL---~~ 159 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS--PERL---IQ 159 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC--HHHH---HH
Confidence 22 233445666887766 7888999999999999999999999999999999999998866543 1111 11
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCC
Q 047440 412 PGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEE 491 (619)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (619)
.+...+++.++..++..+- .|++..... +..+..
T Consensus 160 v~~~~a~i~~~l~~ia~wg-~E~r~~~~~---------------------------------------------~~~~~~ 193 (403)
T PF03209_consen 160 VIQGVALIALLLNLIALWG-QEPRRSRRA---------------------------------------------AAAERP 193 (403)
T ss_pred HHHHHHHHHHHHHHHHHHh-cccCCcccc---------------------------------------------cCCCCC
Confidence 2222233322222222222 222211100 000000
Q ss_pred CCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 047440 492 SHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNM 571 (619)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~ 571 (619)
.......+++++. +|+.....+..++..+++..-...+-+|-.+.+|++..+...+....+.+..++..+.+..+.++
T Consensus 194 ~~~f~~a~~~~~~--~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~ 271 (403)
T PF03209_consen 194 RPPFREAWRQVWA--SPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR 271 (403)
T ss_pred CccHHHHHHHHHh--CCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111223334443 78888888888888888888888889999999999999999999999999888888888455568
Q ss_pred cchHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhhcccc
Q 047440 572 FEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEV 617 (619)
Q Consensus 572 ~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~ 617 (619)
.+++++..+|+..+++++.++.......+.+.+....++++++.++
T Consensus 272 ~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~ 317 (403)
T PF03209_consen 272 LGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGL 317 (403)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhH
Confidence 8888888899988888887766554344567777777777777654
No 119
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=1.7e-13 Score=145.79 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL-FIGNVMY 329 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~-~i~~~l~ 329 (619)
.+..+..+...+..+.+...+..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-.+.+. .++.+++
T Consensus 100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~ 179 (735)
T KOG3626|consen 100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF 179 (735)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence 334445556666667777888888889999999999999999999999999999999997776666555554 4777777
Q ss_pred HHh------------h-------c---------------------------cCc--HH-HHHHHHHHhhccCcc--hhhh
Q 047440 330 ALA------------Y-------D---------------------------FSS--IA-VLLIGRLFCGFGSAR--AVNR 358 (619)
Q Consensus 330 ~~~------------~-------~---------------------------~~~--~~-~l~~~r~l~G~~~~~--~~~~ 358 (619)
++- . + ..+ +| .++++.++.|+|... +...
T Consensus 180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi 259 (735)
T KOG3626|consen 180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI 259 (735)
T ss_pred hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence 653 0 0 000 23 577789999999998 9999
Q ss_pred hhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc----------cceeccc-cchhHHHHHHHHHHHHHHH
Q 047440 359 RYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI----------YKLTFNQ-NTLPGWIMAVAWLFYLVWL 427 (619)
Q Consensus 359 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~----------~~w~w~~-~~~~~~~~~~~~~~~~~~~ 427 (619)
+|+-|.+..++-+..+|+......+|.++|-++|+++...+.. ..-||.. |+.-|++.+++.++..+.+
T Consensus 260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~ 339 (735)
T KOG3626|consen 260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL 339 (735)
T ss_pred ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998332210 1123321 3567778887766666665
Q ss_pred hhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc-
Q 047440 428 CISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL- 506 (619)
Q Consensus 428 ~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 506 (619)
++ +|...+...++.... ..+..+++.. ..+.........+.-.+.+++++
T Consensus 340 f~-fPk~lp~~~~~~~~~---------------------------~~~~~k~~~~-~~~~~~~~~~~ikdfp~s~~~ll~ 390 (735)
T KOG3626|consen 340 FF-FPKELPKSQKRKRAR---------------------------DLHVLKTESG-GAKSDKTFGKKIKDFPKSIKRLLS 390 (735)
T ss_pred Hh-CcccCccccccchhh---------------------------hhcccccccc-cccCCcchhhhHHHHHHHHHHHhc
Confidence 54 455544322200000 0000000000 00000000111122233444555
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccc--hHHHHHHHHHH
Q 047440 507 TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFE--DRQILLASEIM 584 (619)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g--~r~~l~~~~~~ 584 (619)
+|-+...++...+...++.++.+++|-|+...||.++..+.+++...++.++..+.++||++++|+. .|....+.++.
T Consensus 391 N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~ 470 (735)
T KOG3626|consen 391 NPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC 470 (735)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence 6667777778888888999999999999999999999999999999999998888888889999863 44444444444
Q ss_pred HHHH
Q 047440 585 VCIG 588 (619)
Q Consensus 585 ~~i~ 588 (619)
..++
T Consensus 471 ~~l~ 474 (735)
T KOG3626|consen 471 SVLS 474 (735)
T ss_pred HHHH
Confidence 3333
No 120
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.53 E-value=3.1e-12 Score=134.65 Aligned_cols=257 Identities=14% Similarity=0.146 Sum_probs=178.3
Q ss_pred chhhHHHhhHHHHHHHHhhhhhhhccccCchhHHH-HHHHH-HHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhh
Q 047440 283 TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVF-SSIVL-FIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNR 358 (619)
Q Consensus 283 ~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~-~~~~~-~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~ 358 (619)
+..++..++..+..++..|+.|.++|+.|+|+-++ +..+. .++++++.+. ...+++...+..++.-++.+. ....
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v-~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV-SPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999988777543 33333 3555555554 224455444555555555444 7788
Q ss_pred hhhhccCccchh--------------------------hhHhHHHHHHHHHHhHHHHHHhhhhhcccccc-ceeccccch
Q 047440 359 RYISDCVPLKIR--------------------------MQASAGFVSASALGMACGPALAGLLQTNFKIY-KLTFNQNTL 411 (619)
Q Consensus 359 ~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~-~w~w~~~~~ 411 (619)
+++.++.+++.+ ++..+.-...+.+|.++.-++.-.+....+.. .-.+ ..+.
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~-~~r~ 227 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTW-AIRV 227 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccch-hhhH
Confidence 999999999888 88888877777788877776665553222100 0011 1355
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCC
Q 047440 412 PGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEE 491 (619)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (619)
.+.+.++.+++..+..++++|+.|+....+. .......+
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~----------~~~~~~~g------------------------------- 266 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPGPRPLPS----------GSSYLRFG------------------------------- 266 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc----------chhHHHHH-------------------------------
Confidence 8888899988888888899999876321100 00000000
Q ss_pred CCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 047440 492 SHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNM 571 (619)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~ 571 (619)
-.+....++++++ .|.+...++++++..-+...+......|..+.+|++..+...+..+..+.++++.++.+ ++.||
T Consensus 267 ~~~l~~t~k~~~~--~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g-~l~~r 343 (477)
T PF11700_consen 267 FKRLWRTFKEIRK--LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFG-WLQDR 343 (477)
T ss_pred HHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 0001122333333 57888888889999989999999999999999999999999999999999999999999 99999
Q ss_pred cchH--HHHHHHHHHH
Q 047440 572 FEDR--QILLASEIMV 585 (619)
Q Consensus 572 ~g~r--~~l~~~~~~~ 585 (619)
+|.| +++.++.++.
T Consensus 344 ~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 344 FGPKTKRTLLISLILW 359 (477)
T ss_pred hCCchhHHHHHHHHHH
Confidence 9999 7766665444
No 121
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.50 E-value=1e-12 Score=131.79 Aligned_cols=203 Identities=14% Similarity=0.042 Sum_probs=145.5
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc-------------
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK------------- 400 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~------------- 400 (619)
.+++.++++-++.|.|.+. +....++++..|++++++.+++.+.+.++|.++||++++.+.....
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 7899999999999999999 9999999999999999999999999999999999999998853210
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHH-hhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCC
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWL-CISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGD 479 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~-~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (619)
.++|+| ++++.+++.++..++. +.-+||..+++.+
T Consensus 88 ~~~~~~-----~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~--------------------------------------- 123 (310)
T TIGR01272 88 AAKVHT-----PYLLLAGALAVLAIIFAFLPLPELQEADVA--------------------------------------- 123 (310)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHccCCCCCccccc---------------------------------------
Confidence 023444 8886665544443332 2223332110000
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhc--ccccchhHHHHHHHhhhhH
Q 047440 480 QEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYY--FGWSTGAVAIFLACLGLTV 557 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~ 557 (619)
+.... . . ...+...+ ++.++...+..++...+..+...+.+.|+.+. +|+++.+.+...+....+.
T Consensus 124 ----~~~~~---~-~--~~~~~~~~--~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~ 191 (310)
T TIGR01272 124 ----RVSSG---D-T--TQKTSAFQ--FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGA 191 (310)
T ss_pred ----ccccc---c-c--cchhhHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 00000 0 0 00112222 55666666666676667788899999999753 6999999999999999999
Q ss_pred HHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhccc
Q 047440 558 LPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 558 ~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
++++++.+ ++.||+|+++.+.++.++.+++.++....
T Consensus 192 ~iGr~~~~-~l~~r~g~~~~l~~~~~l~~~~~~l~~~~ 228 (310)
T TIGR01272 192 MVGRFIGS-AVMPMISQGRYLAFNAFLAVLLSIGAALT 228 (310)
T ss_pred HHHHHHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999988 99999999998888877777766544433
No 122
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.50 E-value=1.3e-11 Score=121.01 Aligned_cols=270 Identities=14% Similarity=0.133 Sum_probs=172.8
Q ss_pred HHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHHHhhccC
Q 047440 258 FLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL-FIGNVMYALAYDFS 336 (619)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~-~i~~~l~~~~~~~~ 336 (619)
.+...+..+..|.+-.+.+++|.+..+++.+........++.+++.|.++||+|||+.-+...++ .++++ +-.. +
T Consensus 44 ~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~---~ 119 (354)
T PF05631_consen 44 LLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHS---S 119 (354)
T ss_pred HHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhc---c
Confidence 33444566677777667788999999999999999999999999999999999999966554444 45554 4445 8
Q ss_pred cHHHHHHHHHHhhccCcc--hhhhhhh-hcc----CccchhhhHhHHHH-HHHHHHhHHHHHHhhhhhccccccceeccc
Q 047440 337 SIAVLLIGRLFCGFGSAR--AVNRRYI-SDC----VPLKIRMQASAGFV-SASALGMACGPALAGLLQTNFKIYKLTFNQ 408 (619)
Q Consensus 337 ~~~~l~~~r~l~G~~~~~--~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~ 408 (619)
+++.++++|++.|++.+. .+.-+++ .|. +|++..+.-++... ...++-.+++.+++.++.+..+ . .
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~---~---g 193 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG---F---G 193 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC---C---C
Confidence 999999999999999888 5555554 443 33333333333222 2223333444445555543332 1 0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCC
Q 047440 409 NTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDET 488 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (619)
...||....++.+++.+++....+|.+.....
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~------------------------------------------------ 225 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILKTWPENYGDTSS------------------------------------------------ 225 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHhcccccCCCccc------------------------------------------------
Confidence 24488888888777777766666665432111
Q ss_pred CCCCCCCCcchHHHHHhc--CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHH
Q 047440 489 SEESHPPANSIRSAYRLL--TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGS 566 (619)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 566 (619)
.......+++..+.. +++++.+.++..++-.+.+.+...+++-+... + ....-|++++.+.+..++|+.+...
T Consensus 226 ---~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~ 300 (354)
T PF05631_consen 226 ---SSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSR 300 (354)
T ss_pred ---ccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHH
Confidence 001111222222221 68888888888888888888887777666521 1 2344689999999999999888762
Q ss_pred hhhhccchHHHHHHHHHHHHHHHH
Q 047440 567 YISNMFEDRQILLASEIMVCIGIL 590 (619)
Q Consensus 567 ~l~d~~g~r~~l~~~~~~~~i~~~ 590 (619)
.+.++......+...+.+.++++.
T Consensus 301 l~s~~~~~e~~l~~v~~~aa~~l~ 324 (354)
T PF05631_consen 301 LLSKSLRPESLLRYVFAVAAVSLA 324 (354)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHH
Confidence 344555544444444444444443
No 123
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.49 E-value=3.7e-12 Score=126.80 Aligned_cols=321 Identities=13% Similarity=0.068 Sum_probs=199.2
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+|..++...+..+...+....+.++-.....-+| +....-|+..+|.+.+....+++-|+.|++|-|..++.+.+..
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 345555544444444444333333333333333467 7788889999999999999999999999999999777766654
Q ss_pred -HHHHHHHHhhcc---CcHH--HHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 324 -IGNVMYALAYDF---SSIA--VLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 324 -i~~~l~~~~~~~---~~~~--~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
+|..+-..+... +.++ ..+.+..+.+.+.-. .......+-|+++++|..+..+-.++..+|.++|.++...+
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 787776666332 4555 677788888777666 33346667799999999999999999999999999998888
Q ss_pred hccc---cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCC
Q 047440 396 QTNF---KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEK 472 (619)
Q Consensus 396 ~~~~---~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (619)
..+. ....|.. ...|+..+++..+.+++..+..++.|+.....
T Consensus 200 V~~~~~~~~~~~~~---~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~------------------------------- 245 (480)
T KOG2563|consen 200 VPSSKDSEDNSWLF---FTLFLGVECLAALLLALVLFVFTKKPPTPPSA------------------------------- 245 (480)
T ss_pred cCCCCCcchhHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-------------------------------
Confidence 4332 1112322 22345455554555555555555544322110
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHH
Q 047440 473 PEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLAC 552 (619)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 552 (619)
. ........-..+.+.+++ ++++.++.+++......+++..+.+-.-+... |++...+|.....
T Consensus 246 ------------s-~~~~~~~~f~~si~~~~~--n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l 309 (480)
T KOG2563|consen 246 ------------S-QAALQDASFPKSIKSCFK--NRQFIILAICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGAL 309 (480)
T ss_pred ------------h-HhhhhcCcHHHHHHHHHc--CccHHHHHHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHH
Confidence 0 000000112233444444 78888888777777777777666555444433 7777888998888
Q ss_pred hhhhHHHHHHHHHHhhhhccchHHH-HHHHHHHHHHH-HHhhccccc-ccchhHHHHHHHHhhhccc
Q 047440 553 LGLTVLPVNIIVGSYISNMFEDRQI-LLASEIMVCIG-ILFSFHVFI-PYSVPQYVCSGLVLFVFAE 616 (619)
Q Consensus 553 ~~~~~~~~~~~~g~~l~d~~g~r~~-l~~~~~~~~i~-~~~~~~~~~-~~~~~~~i~~~~~~~~g~~ 616 (619)
..+++++++.+.| .+.||.+.-+. +++......++ +.+...... ......+..+..+.+++.+
T Consensus 310 ~iv~Gmlga~~~g-ii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~ 375 (480)
T KOG2563|consen 310 MIVAGMLGALASG-IIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTG 375 (480)
T ss_pred HHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcC
Confidence 8889999999999 99999865443 33344444444 222222221 2234455555555555544
No 124
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.49 E-value=3.4e-15 Score=159.16 Aligned_cols=313 Identities=15% Similarity=0.208 Sum_probs=2.9
Q ss_pred HHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHHHh
Q 047440 254 LANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL-FIGNVMYALA 332 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~-~i~~~l~~~~ 332 (619)
++..++.++..+.....+..+.+.|+++.++.|++.+.+-++.++..++..++.+|..|-+.+-.+.++ .+|.+++++-
T Consensus 9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhcc
Confidence 334444466667778888899999999999999999999999999999999999986554455455544 4777776652
Q ss_pred hc-----------------------c------------------------CcHHHHHHHHHHhhccCcc--hhhhhhhhc
Q 047440 333 YD-----------------------F------------------------SSIAVLLIGRLFCGFGSAR--AVNRRYISD 363 (619)
Q Consensus 333 ~~-----------------------~------------------------~~~~~l~~~r~l~G~~~~~--~~~~~~i~~ 363 (619)
.. . .-++.++++.++.|+|.+. +...+|+-|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 00 0 0135688899999999998 999999999
Q ss_pred cCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc---c----------ccceeccc-cchhHHHHHHHHHHHHHHHhh
Q 047440 364 CVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF---K----------IYKLTFNQ-NTLPGWIMAVAWLFYLVWLCI 429 (619)
Q Consensus 364 ~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~---~----------~~~w~w~~-~~~~~~~~~~~~~~~~~~~~~ 429 (619)
.+++++-+.++|++.++..+|.++|-++|+.+...+ + ..+-||.+ |+..|++.+++.++..+..++
T Consensus 169 nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 169 NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998873211 0 01123332 466777777776666555554
Q ss_pred hccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc-Cc
Q 047440 430 SFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL-TP 508 (619)
Q Consensus 430 ~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 508 (619)
+ |+..+...+.....+. .+...+....++..+.+.........+.-++.+++++ +|
T Consensus 249 F-Pk~lp~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np 305 (539)
T PF03137_consen 249 F-PKKLPGTSERQEEKES----------------------SERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNP 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C-CccCCCcccccchhhh----------------------hhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcCh
Confidence 4 5443322110000000 0000000000000000000000111122233344444 67
Q ss_pred chHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccc--hHHHHHHHHHHHH
Q 047440 509 SVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFE--DRQILLASEIMVC 586 (619)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g--~r~~l~~~~~~~~ 586 (619)
.+....+...+..+...++.++.|-|++..|+.+++.++++..+..+.+..++.++||++++|+. .|..+.+.++...
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 77777777888888889999999999999999999999999888888777777777779999874 4445444444444
Q ss_pred HHH
Q 047440 587 IGI 589 (619)
Q Consensus 587 i~~ 589 (619)
++.
T Consensus 386 v~~ 388 (539)
T PF03137_consen 386 VSV 388 (539)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 125
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.46 E-value=3.4e-13 Score=118.33 Aligned_cols=137 Identities=28% Similarity=0.415 Sum_probs=115.0
Q ss_pred HHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhc
Q 047440 287 IVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISD 363 (619)
Q Consensus 287 ~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~ 363 (619)
++.+.+.++..+++++.|+++||+|||+.+..+.+.. ++.++.... ++++.+++.+++.|++.+. +...+++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 2 LLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred EEEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556778899999999999999999999887776654 777777777 8899999999999999887 788899999
Q ss_pred cCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCC
Q 047440 364 CVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 364 ~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 434 (619)
.+|+++|++++++......+|..+||.+++++.+.. +|+| ++++.+++.++..+..++..||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL---GWRA-----PFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc---chHH-----HHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999997654 5555 77777777676666666666653
No 126
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.46 E-value=7e-13 Score=139.23 Aligned_cols=167 Identities=16% Similarity=0.215 Sum_probs=131.1
Q ss_pred HhhccChHHHHHHhCCcc--------chhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhc-
Q 047440 265 YIIVPTADDYSMSLGAAA--------TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYD- 334 (619)
Q Consensus 265 ~~~~~~~~~~~~~~g~s~--------~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~- 334 (619)
.......|.+.++.|.++ ...|.+.++..++.+++.++.|+++||+|+|+++..+.+.. ++.+++.....
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~ 304 (418)
T TIGR00889 225 QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE 304 (418)
T ss_pred HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 344455677787777553 56799999999999999999999999999999988887765 55555554311
Q ss_pred cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHH-HHHHHHhHHHHHHhhhhhccccc---cceeccc
Q 047440 335 FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFV-SASALGMACGPALAGLLQTNFKI---YKLTFNQ 408 (619)
Q Consensus 335 ~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~---~~w~w~~ 408 (619)
..+++.+++.+++.|++.+. +....+++|++|++.|++++|+.+ +..++|.++||+++|++.+..+. ++|++
T Consensus 305 ~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~-- 382 (418)
T TIGR00889 305 YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQT-- 382 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHH--
Confidence 01356677889999998777 777889999999999999999997 67899999999999999776542 24555
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 409 NTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
.|++.+++.++..++.++++||+.+
T Consensus 383 ---~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 383 ---MWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 7888888888888888888887744
No 127
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.44 E-value=1.5e-12 Score=143.26 Aligned_cols=138 Identities=12% Similarity=-0.011 Sum_probs=110.9
Q ss_pred hHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhh
Q 047440 286 GIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYIS 362 (619)
Q Consensus 286 g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~ 362 (619)
.+...+..++.+++.++.|+++||+|||+++++++++. +++++++++ ++.+.+++++++.|++.++ ++..++++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~---~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG---NSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888999999999999999999998887765 777777777 7777788888888876655 78889999
Q ss_pred ccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 363 DCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 363 ~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
|++|.+.|++++|+.+++..+|.++||++++.+.... ...+|++.+++.++++++. +++||+..
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~---------~~~pf~i~a~~lll~~ll~-~~LPET~~ 738 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT---------KAAPILFASAALACGGLLA-LKLPDTRG 738 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHH-HhCCCCcc
Confidence 9999999999999999999999999999999875422 2347777777766655544 45688654
No 128
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.43 E-value=5.5e-12 Score=124.98 Aligned_cols=285 Identities=12% Similarity=0.121 Sum_probs=189.7
Q ss_pred hhccChHHHHHH-hC---Cc----cchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHH-HHH-HHHHHHHHhhcc
Q 047440 266 IIVPTADDYSMS-LG---AA----ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSI-VLF-IGNVMYALAYDF 335 (619)
Q Consensus 266 ~~~~~~~~~~~~-~g---~s----~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~-~~~-i~~~l~~~~~~~ 335 (619)
+...+.|.|..+ .+ .+ .+..|...++..+..++.+|+.|.++|+.|+|+..+... +.. ++.++..++++.
T Consensus 33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~ 112 (438)
T COG2270 33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG 112 (438)
T ss_pred eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455556554 22 22 356788899999999999999999999999777554333 333 566666666332
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec-------
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF------- 406 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w------- 406 (619)
..++..++...+..++... ....+++.+..++++-++..+.-.....+|+++.-++.-......+..++.-
T Consensus 113 s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~ 192 (438)
T COG2270 113 SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPP 192 (438)
T ss_pred chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCc
Confidence 3445555566667777655 6778999999999888887776555555665554333211100000001100
Q ss_pred ---cccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCC
Q 047440 407 ---NQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYD 483 (619)
Q Consensus 407 ---~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (619)
..-+.++.+.++.+++..+..++..|+.+...... ...+.
T Consensus 193 ~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~------------~~~l~------------------------- 235 (438)
T COG2270 193 ADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP------------PTALR------------------------- 235 (438)
T ss_pred cccccchhHHHHHHHHHHHHHhHHHhcccccccccccc------------hHHHH-------------------------
Confidence 01255788888888888888888877766421000 00000
Q ss_pred CCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHH
Q 047440 484 GSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNII 563 (619)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~ 563 (619)
..-++....+++.++ ++.+...+++.++..=+......+...|....+|++..+..++.....+++++++++
T Consensus 236 ------~g~k~L~~t~k~i~~--~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii 307 (438)
T COG2270 236 ------NGFKELKSTFKEIRG--RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAII 307 (438)
T ss_pred ------HHHHHHHHHHHHHhc--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 000011223444444 678888888999988888888888899999889999999999999999999999999
Q ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 564 VGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 564 ~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
.| ++.+|+|.|+++.+++++..+.++...+..
T Consensus 308 ~g-~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~ 339 (438)
T COG2270 308 AG-FLDERFGSKPVLMIGLVILSIAALYLIFLE 339 (438)
T ss_pred HH-HHHHHhCCceeehHHHHHHHHHHHHHHHcc
Confidence 99 999999999998888877766665555444
No 129
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.40 E-value=6.4e-12 Score=135.10 Aligned_cols=173 Identities=20% Similarity=0.234 Sum_probs=120.8
Q ss_pred HHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHHHhhcc
Q 047440 258 FLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL-FIGNVMYALAYDF 335 (619)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~-~i~~~l~~~~~~~ 335 (619)
++....++.....+|.+.+ .+|.+....+++.+...++..++.+++|+++||+|||++++.+.+. .++.+.+......
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334455556667888875 5799888888888889999999999999999999999988766543 2322221111111
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhH
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPG 413 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~ 413 (619)
++.+.+++++++.|++.+. .....++.+.+|++.|+.++|+......++..++|.+.+++.+..+ +|+. ++
T Consensus 340 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~--~~~~-----~~ 412 (490)
T PRK10642 340 NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ--NLMM-----PA 412 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchH-----HH
Confidence 5677788889988887655 5667788899999999999997544455666789999998865432 3333 55
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhh
Q 047440 414 WIMAVAWLFYLVWLCISFKEPSRDI 438 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~pe~~~~~ 438 (619)
++..+.+++.++. .+++||+|+..
T Consensus 413 ~~~~~~~~i~~~~-~~~~pes~~~~ 436 (490)
T PRK10642 413 YYLMVVAVIGLIT-GVTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHH-HHHhccccCCC
Confidence 5555554444443 45669998743
No 130
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.35 E-value=1.1e-10 Score=118.62 Aligned_cols=172 Identities=17% Similarity=0.140 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHH-HhC----CccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHH
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSM-SLG----AAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSS 319 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g----~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~ 319 (619)
+-+.+..++..-+-.-++++.+...+..|+. +++ ++.++..-+.++|..-.-+..+++|+++|| .|+|+.++.+
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG 98 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG 98 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 3456777788888888888777776666665 355 999988888888888888899999999999 7988877655
Q ss_pred HH-HHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccc--hhhhHhHHHHHHHHHHhHHHHHHhhh
Q 047440 320 IV-LFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLK--IRMQASAGFVSASALGMACGPALAGL 394 (619)
Q Consensus 320 ~~-~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~g~~i~~~ 394 (619)
.+ ..+|.++.+... ..+...++++-++.++|.|. +...++++|.+|++ +|-..+++++++.++|+.++|++.++
T Consensus 99 ail~~iGh~~L~~~~-~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~ 177 (498)
T COG3104 99 AILMAIGHLVLAISS-VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGL 177 (498)
T ss_pred HHHHHHHHHHHhccc-cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHH
Confidence 55 558988888761 02677888999999999998 99999999999764 47778889999999999999999999
Q ss_pred hhccccccceeccccchhHHHHHHHHHHHHHH
Q 047440 395 LQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVW 426 (619)
Q Consensus 395 l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~ 426 (619)
+.+.++ | ...|.+.++-..+.++.
T Consensus 178 ~~~~~g---~-----~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 178 LAINYG---W-----HVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HHHhhC---H-----HHHHHHHHHHHHHHHHH
Confidence 988774 3 34676666554444433
No 131
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.33 E-value=3.4e-11 Score=126.17 Aligned_cols=159 Identities=21% Similarity=0.163 Sum_probs=123.0
Q ss_pred hhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHH
Q 047440 263 NTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l 341 (619)
........+|.+..+.|. ...++..+.+.++..++.++.|++.||+|+|+++..+.+.. ++.++..+. ++.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 305 (399)
T PRK05122 231 GFGTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---PSPWMA 305 (399)
T ss_pred HHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---ccHHHH
Confidence 344444556667777666 34567778889999999999999999999999887766554 666666666 788888
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHH
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVA 419 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~ 419 (619)
+++.++.|++.+. +.....+.+.+|+++|++++|+++....+|..++|++.|++.+.. +|++ .+++.+++
T Consensus 306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~-----~~~~~~~~ 377 (399)
T PRK05122 306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF---GYPS-----IFLAAALA 377 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHH-----HHHHHHHH
Confidence 8889999999876 666677889999999999999999999999999999999997655 4444 77777777
Q ss_pred HHHHHHHHhhhccCC
Q 047440 420 WLFYLVWLCISFKEP 434 (619)
Q Consensus 420 ~~~~~~~~~~~~pe~ 434 (619)
.++..++.+++.+++
T Consensus 378 ~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 378 ALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHhcccc
Confidence 666666555543433
No 132
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.33 E-value=1.8e-11 Score=128.52 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=120.7
Q ss_pred HhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHH
Q 047440 265 YIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLI 343 (619)
Q Consensus 265 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~ 343 (619)
......+|.+.++.|.+..+.|++.+.+.++.+++.++.|+++||+|||+.+..+.+.. ++.++..+. ++.+.+.+
T Consensus 237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 313 (406)
T PRK11551 237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA---PSFAGMLL 313 (406)
T ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHH
Confidence 34444578888889999999999999999999999999999999999999887665544 555555555 67777777
Q ss_pred HHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHH
Q 047440 344 GRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWL 421 (619)
Q Consensus 344 ~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~ 421 (619)
..++.|++.+. +...+++.|.+|+++|++++|+.+....+|..+||.++|++.+..+ +|.+ .+++.+.+.+
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~--~~~~-----~~~~~~~~~~ 386 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR--STVG-----VIGASIPVIL 386 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC--chHH-----HHHHHHHHHH
Confidence 77888887655 7788899999999999999999999999999999999999976543 2222 4445544444
Q ss_pred HHHHHHhhh
Q 047440 422 FYLVWLCIS 430 (619)
Q Consensus 422 ~~~~~~~~~ 430 (619)
+..++.++.
T Consensus 387 ~~~~~~~~~ 395 (406)
T PRK11551 387 VAALAALLL 395 (406)
T ss_pred HHHHHHHHH
Confidence 444444433
No 133
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.31 E-value=4.6e-11 Score=124.26 Aligned_cols=163 Identities=15% Similarity=0.062 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
++...+..++............|.+.+++|.+..++|++.++..++.+++.++.|++.||+|.|+++..+.+.. +..++
T Consensus 207 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 207 NLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 33344444544555656666778888999999999999999999999999999999999999999888777765 77778
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHH-HHHHHHhHHHHHHhhhhhcccccccee
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFV-SASALGMACGPALAGLLQTNFKIYKLT 405 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~~~w~ 405 (619)
++++ ++.+.+++.+++.|++.+. +....++.+. |+++|+.+.++++ ...++|.++||.++|++.+.++
T Consensus 287 ~~~~---~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g----- 357 (382)
T TIGR00902 287 IGAI---EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG----- 357 (382)
T ss_pred HHhH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 8888 9999999999999999888 8888999988 9999999999976 5788999999999999987664
Q ss_pred ccccchhHHHHHHHHHHHHH
Q 047440 406 FNQNTLPGWIMAVAWLFYLV 425 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~ 425 (619)
...|++.++++++.++
T Consensus 358 ----~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 358 ----AGTFVFMAIIAAAAFF 373 (382)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 2356666666655443
No 134
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.31 E-value=4.2e-11 Score=122.72 Aligned_cols=166 Identities=27% Similarity=0.321 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHh-CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchh-HHHHHHHHH-HHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSL-GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKP-LVFSSIVLF-IGNV 327 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~-~~~~~~~~~-i~~~ 327 (619)
....+..++............|.+..+. |.+..+.+++.+...++..++.++.|++.||+|||+ ++..+.+.. ++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (352)
T cd06174 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL 257 (352)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3334444455555666777788888875 999999999999999999999999999999999999 887777655 7777
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccccee
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLT 405 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~ 405 (619)
+.... ++.+.+++..++.|++.+. +...+++.|..|+++|++.+|+.+....+|..++|.+.+.+.+.. +|+
T Consensus 258 ~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---~~~ 331 (352)
T cd06174 258 LLALA---PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---GYG 331 (352)
T ss_pred HHHHh---ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---Ccc
Confidence 77777 7788899999999999887 889999999999999999999999999999999999999997654 455
Q ss_pred ccccchhHHHHHHHHHHHHHHH
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWL 427 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~ 427 (619)
+ ++++.+++.++..++.
T Consensus 332 ~-----~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 332 G-----VFLILAALALLAALLL 348 (352)
T ss_pred h-----HHHHHHHHHHHHHHHh
Confidence 5 7777777766655544
No 135
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.31 E-value=2.1e-11 Score=126.38 Aligned_cols=149 Identities=12% Similarity=0.036 Sum_probs=116.1
Q ss_pred hhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 266 IIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 266 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
......+.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.+.. ++.++..+... .+.+.+++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 301 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM-LNDVLFLAT 301 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc-chhHHHHHH
Confidence 3344556677889999989999999999999999999999999999999887776654 66655555411 123334456
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHH
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~ 422 (619)
.++.|++.+. +..++++.|.+|+++|++++|+.+....+|..+||.++|++.+.. +|++ +|++.+++.++
T Consensus 302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~-----~f~~~~~~~~~ 373 (377)
T TIGR00890 302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---GFEY-----TFIVTGAFALT 373 (377)
T ss_pred HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh---chhh-----HHHHHHHHHHH
Confidence 6777877666 667788999999999999999999999999999999999997765 4555 77776666544
Q ss_pred H
Q 047440 423 Y 423 (619)
Q Consensus 423 ~ 423 (619)
.
T Consensus 374 ~ 374 (377)
T TIGR00890 374 S 374 (377)
T ss_pred h
Confidence 3
No 136
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.31 E-value=4.7e-11 Score=124.73 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=117.7
Q ss_pred hHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHH
Q 047440 264 TYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 264 ~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l 341 (619)
........|.+.+ ++|.++.+.|++.+...++.+++.+++|+++||+|||+.+..+.+.. +........ ++.+.+
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 308 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---HSPAIL 308 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---hhHHHH
Confidence 3334456777765 58999999999988888888889999999999999999776665443 333333444 677778
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHH
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVA 419 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~ 419 (619)
++.+++.+++.|. +....+..|..|+ +|+.++++++....+|..+||.++|++.+.+ +|++ ++++.+++
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~---g~~~-----~~~~~~~~ 379 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW---NYHA-----VFWFALVM 379 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHH-----HHHHHHHH
Confidence 8888888877666 5666778888875 5999999999999999999999999997755 4444 77776666
Q ss_pred HHHHHHHHhhhccC
Q 047440 420 WLFYLVWLCISFKE 433 (619)
Q Consensus 420 ~~~~~~~~~~~~pe 433 (619)
.++.+++. +..||
T Consensus 380 ~~~~~~~~-~~~~~ 392 (393)
T PRK15011 380 IIATLFCL-LRIKD 392 (393)
T ss_pred HHHHHHHH-HhhcC
Confidence 55554444 34454
No 137
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.30 E-value=2.1e-11 Score=128.60 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=121.0
Q ss_pred CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--h
Q 047440 279 GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--A 355 (619)
Q Consensus 279 g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~ 355 (619)
+.+..+.|++.++..++..++.+++|+++||+|+|+++..+.++. ++.++.+++ ++.+.+++.+++.|++.+. +
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA---TGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 566678899999999999999999999999999999887666554 777777777 8899999999999988766 6
Q ss_pred hhhhhhhccCccchhhhHhHH-HHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCC
Q 047440 356 VNRRYISDCVPLKIRMQASAG-FVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 356 ~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 434 (619)
....++.+.+|++.|+...+. ++++..+|.++||.++|++.+.+ ||+ .+|++.+++.++..++.++.++++
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---G~~-----~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---GFQ-----GTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---Cch-----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667889999999999887765 67788999999999999998766 344 488888887777777777776665
Q ss_pred chh
Q 047440 435 SRD 437 (619)
Q Consensus 435 ~~~ 437 (619)
++.
T Consensus 407 ~~~ 409 (420)
T PRK09528 407 REL 409 (420)
T ss_pred chh
Confidence 543
No 138
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.29 E-value=4.1e-11 Score=125.96 Aligned_cols=161 Identities=15% Similarity=0.170 Sum_probs=125.2
Q ss_pred hhHhhccChHHHHHHhCCccc----hhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCc
Q 047440 263 NTYIIVPTADDYSMSLGAAAT----VCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSS 337 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~s~~----~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~ 337 (619)
......+.+|.+..+.+.+.. ..|.+.++..++..++.+++|+++||+|||+++..+.+.. ++.++..+. ++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~ 310 (408)
T PRK09874 234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV---QT 310 (408)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh---cc
Confidence 344455667777776543332 3466677778888999999999999999999887776654 556666666 77
Q ss_pred HHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHH
Q 047440 338 IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWI 415 (619)
Q Consensus 338 ~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~ 415 (619)
.+.+++.+++.|++.+. +...+++.+..|+++||+.+++......+|..+||.++|++.+.. +|++ +|++
T Consensus 311 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~---g~~~-----~f~~ 382 (408)
T PRK09874 311 PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY---GFRA-----VFLV 382 (408)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc---chhH-----HHHH
Confidence 88888999999999887 777788888899999999999999999999999999999997765 4444 8888
Q ss_pred HHHHHHHHHHHHhhhccCC
Q 047440 416 MAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 416 ~~~~~~~~~~~~~~~~pe~ 434 (619)
.+++.++..++.++..+++
T Consensus 383 ~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 383 TAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888777776666554443
No 139
>PRK12382 putative transporter; Provisional
Probab=99.29 E-value=7.3e-11 Score=123.34 Aligned_cols=158 Identities=23% Similarity=0.239 Sum_probs=123.6
Q ss_pred hhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHH
Q 047440 262 VNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAV 340 (619)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~ 340 (619)
..........|.+.++.|.+. .++..+.+.++..+++++.|++.||+|+|+.+..+.+.. ++.++..+. ++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 304 (392)
T PRK12382 230 VGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---PTAWV 304 (392)
T ss_pred HHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---ccHHH
Confidence 334444555667777777653 566677788888999999999999999998877666554 666666666 77888
Q ss_pred HHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHH
Q 047440 341 LLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAV 418 (619)
Q Consensus 341 l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~ 418 (619)
++++.++.|++.+. +...+.+.+.+|+++||+++|+++....+|..+||.++|++.+.. +|++ .|++.++
T Consensus 305 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---g~~~-----~~~~~~~ 376 (392)
T PRK12382 305 ALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---GYPS-----VFLAGAI 376 (392)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchH-----HHHHHHH
Confidence 88889999998876 677788899999999999999999999999999999999998766 4555 7888777
Q ss_pred HHHHHHHHHhhhcc
Q 047440 419 AWLFYLVWLCISFK 432 (619)
Q Consensus 419 ~~~~~~~~~~~~~p 432 (619)
+.++..++.++..+
T Consensus 377 ~~~~~~~~~~~~~~ 390 (392)
T PRK12382 377 SAVLGIIVTILSFR 390 (392)
T ss_pred HHHHHHHHHHhhcc
Confidence 76666666555433
No 140
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.29 E-value=7.6e-11 Score=124.26 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=128.2
Q ss_pred hccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 267 IVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 267 ~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
....+|.+.++ +|.++...|++.+...++.+++.++.|++.||.++++.+..+.+.. ++.++..+. ++.+.++++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~ 318 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---PMWILAVLC 318 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc---chHHHHHHH
Confidence 44567888887 8999999999999999999999999999999987777766665544 666666666 777777888
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHH
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~ 422 (619)
.++.|++.+. +...+++.+..|++.||+++|++.....+|..+||.++|++.+.++ +...+++.+++.++
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g--------~~~~~~~~~~~~~~ 390 (417)
T PRK10489 319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT--------PVASASASGFGLLI 390 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc--------hhhHHHHHHHHHHH
Confidence 8888988776 5667889999999999999999999999999999999999977653 33466666766666
Q ss_pred HHHHHhhhccCCch
Q 047440 423 YLVWLCISFKEPSR 436 (619)
Q Consensus 423 ~~~~~~~~~pe~~~ 436 (619)
..++.+..+|+.+.
T Consensus 391 ~~~~~~~~~~~~~~ 404 (417)
T PRK10489 391 IGVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHHhcccccc
Confidence 66666666676554
No 141
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.27 E-value=1.7e-10 Score=120.44 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=126.5
Q ss_pred HHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhc
Q 047440 256 NTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYD 334 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~ 334 (619)
..++....+......+|.+..++|.+..+.|++.+++.++.+++.++.|++.||+|||+.+..+.++. ++.++.....
T Consensus 213 ~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~- 291 (393)
T PRK09705 213 YFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-
Confidence 33344445555666778888889999999999999999999999999999999999999887776554 5544443321
Q ss_pred cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCc-cchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccch
Q 047440 335 FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVP-LKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTL 411 (619)
Q Consensus 335 ~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~ 411 (619)
.+...+. -++.|++.+. +.......+..+ ++++++.+|+.+....++..+||.+.|++.+..+ + +..
T Consensus 292 -~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~-----~~~ 361 (393)
T PRK09705 292 -LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--N-----YLM 361 (393)
T ss_pred -chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--C-----chH
Confidence 2222222 2355666655 656566666664 6789999999999999999999999999987654 2 344
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCchhhh
Q 047440 412 PGWIMAVAWLFYLVWLCISFKEPSRDIE 439 (619)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~ 439 (619)
.|++.+++.++..++.+.+.||++.+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 362 DWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchh
Confidence 6777777767777777778888766443
No 142
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.27 E-value=2.8e-11 Score=128.71 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcccc--CchhHHHH--HHHHH-HHH
Q 047440 252 LNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS--YFKPLVFS--SIVLF-IGN 326 (619)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~--Grr~~~~~--~~~~~-i~~ 326 (619)
..+...++..+........+|.+.+++|.+..+.|++.++..++.++++++.|+++||. ++++.... +.+.. ++.
T Consensus 245 ~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ 324 (455)
T TIGR00892 245 VYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTH 324 (455)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555677888888999999999999999999999999999999983 33433322 22222 444
Q ss_pred HHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccce
Q 047440 327 VMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKL 404 (619)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w 404 (619)
+++.+. ++++.+++.+++.|++.+. +...+++.|.+|++++++++|+++.+..+|.++||.++|++.+..+ +|
T Consensus 325 ll~~~~---~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~ 399 (455)
T TIGR00892 325 LLCALA---GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NY 399 (455)
T ss_pred HHHHHh---chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--Cc
Confidence 455556 7888899999999999877 7778899999999999999999999999999999999999977654 45
Q ss_pred eccccchhHHHHHHHHHHHH
Q 047440 405 TFNQNTLPGWIMAVAWLFYL 424 (619)
Q Consensus 405 ~w~~~~~~~~~~~~~~~~~~ 424 (619)
++ .|++.+++.++..
T Consensus 400 ~~-----~f~~~~~~~li~~ 414 (455)
T TIGR00892 400 KY-----IFYASGSIVVSAG 414 (455)
T ss_pred ch-----HHHHhhHHHHHHH
Confidence 55 6666666544443
No 143
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.25 E-value=9.7e-11 Score=125.61 Aligned_cols=179 Identities=12% Similarity=0.008 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
++..++..+.............|.+.+++|.+....++..+...++.+++.+++|+++||+|||+.+..+++.. ++.++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333344443434445556678888889999988899999999999999999999999999999887776544 55444
Q ss_pred HHHh--hccC------cHHHHHHHH-HHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 329 YALA--YDFS------SIAVLLIGR-LFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 329 ~~~~--~~~~------~~~~l~~~r-~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
.++. .... +...+.... +..+++.+. +....++.|.+|++.|++++|+.+++..+|.+++|.+.+++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 366 LGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred HHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4421 0001 222222222 223334444 66777889999999999999999999999999999999998765
Q ss_pred ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 399 FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 399 ~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
. +|++ +|++.++++++..++.+++.||++.
T Consensus 446 ~---~~~~-----~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 446 I---GVGG-----VFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred c---Cccc-----eehhHHHHHHHHHHHHheecccCCC
Confidence 4 4555 6777777777777777777777553
No 144
>PRK03545 putative arabinose transporter; Provisional
Probab=99.25 E-value=2.6e-10 Score=119.01 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=118.2
Q ss_pred cChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHH-HHHHhhccCcHHHHHHHHH
Q 047440 269 PTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNV-MYALAYDFSSIAVLLIGRL 346 (619)
Q Consensus 269 ~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~-l~~~~~~~~~~~~l~~~r~ 346 (619)
..++.+..+ +|.+..+.+++.++..++.++++++.|+++||+|||.+++...+..++.. +.... ++.+.++++.+
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~ 302 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAA---NSEWHLSVLSI 302 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHH
Confidence 344555554 79999999999999999999999999999999998876544444333332 33344 67788888888
Q ss_pred HhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHH
Q 047440 347 FCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYL 424 (619)
Q Consensus 347 l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~ 424 (619)
+.|++.+. +...+.+.+..| +.|++++|++.....+|..+||+++|++.+.++ + +..|++.+++.++.+
T Consensus 303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g---~-----~~~~~~~~~~~~~~~ 373 (390)
T PRK03545 303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG---L-----SSIGYVGAALALAAL 373 (390)
T ss_pred HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---h-----hHHHHHHHHHHHHHH
Confidence 88988655 566677777766 688999999999999999999999999988763 3 447888888877777
Q ss_pred HHHhhhccCC
Q 047440 425 VWLCISFKEP 434 (619)
Q Consensus 425 ~~~~~~~pe~ 434 (619)
++.+...+..
T Consensus 374 ~~~~~~~~~~ 383 (390)
T PRK03545 374 VWSILIFRRF 383 (390)
T ss_pred HHHHHHcccc
Confidence 7766665533
No 145
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.22 E-value=3.4e-10 Score=117.73 Aligned_cols=148 Identities=13% Similarity=0.155 Sum_probs=112.7
Q ss_pred HhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHH
Q 047440 265 YIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLI 343 (619)
Q Consensus 265 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~ 343 (619)
......+|.+.++.|.+....|++.+...++.++++++.|+++||+|+|+++..+.+.. ++.+... . .+....
T Consensus 217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-----~-~~~~~~ 290 (381)
T PRK03633 217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-----S-QAAMAP 290 (381)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-----h-hHHHHH
Confidence 33445578888889999999999999999999999999999999999999887666544 4433221 1 123334
Q ss_pred HHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHH
Q 047440 344 GRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWL 421 (619)
Q Consensus 344 ~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~ 421 (619)
..++.|++.+. |...+++.|..|+++++.+.+.+..+.++|.++||.++|++.+.+ +|.| .|++.+++.+
T Consensus 291 ~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~---g~~~-----~f~~~~~~~l 362 (381)
T PRK03633 291 ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY---SDNL-----LFIMIASVSF 362 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccH-----HHHHHHHHHH
Confidence 55667766554 888888999999988888888888899999999999999997766 4555 6777666655
Q ss_pred HHHHH
Q 047440 422 FYLVW 426 (619)
Q Consensus 422 ~~~~~ 426 (619)
+..+.
T Consensus 363 ~~~~~ 367 (381)
T PRK03633 363 IYLLM 367 (381)
T ss_pred HHHHH
Confidence 44433
No 146
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.21 E-value=2.9e-10 Score=119.19 Aligned_cols=166 Identities=16% Similarity=0.050 Sum_probs=119.1
Q ss_pred HHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHH-HHHH-HHHHHHHHHHh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVF-SSIV-LFIGNVMYALA 332 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~-~~~~-~~i~~~l~~~~ 332 (619)
+..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+ ..++.+.+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~ 308 (402)
T TIGR00897 229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYI 308 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455556778898899999999999999999999999999999999999887653 2322 22333333222
Q ss_pred h--ccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecccc
Q 047440 333 Y--DFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQN 409 (619)
Q Consensus 333 ~--~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~ 409 (619)
+ ..++.+.+++..++.|++.+. ......+.+.. +++||+++|+.+.+..+|..+||.+++.+.+..+ +
T Consensus 309 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g--------~ 379 (402)
T TIGR00897 309 PQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG--------A 379 (402)
T ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------h
Confidence 1 114667777788888888766 33455666765 4689999999999999999999999999977653 3
Q ss_pred chhHHHHHHHHHHHHHHHhh
Q 047440 410 TLPGWIMAVAWLFYLVWLCI 429 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~ 429 (619)
..++++.+++.++..++.++
T Consensus 380 ~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 380 IGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44777777776665555443
No 147
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.21 E-value=3e-10 Score=121.47 Aligned_cols=173 Identities=13% Similarity=0.012 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
++...+..++...........+|.|.. ++|.+..+.++..++..++.+++.+++|+++||+|||+.++...... ++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~ 339 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFT 339 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 444444444444444456677888875 48999999999999999999999999999999999988665443322 2222
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHH-HhHHHHHHhhhhhcc-cc---
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASAL-GMACGPALAGLLQTN-FK--- 400 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~-~~--- 400 (619)
+..+. ..++.+.+++.+++.|++... ......+.|.+|++.||.+.|+.+....+ |..++|.+.|++.+. .+
T Consensus 340 ~~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 340 LGVYQ-HATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred HHHHH-hcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 22221 115666777888888865433 33346777999999999999999988886 779999999999771 10
Q ss_pred -----ccceeccccchhHHHHHHHHHHHHHHHh
Q 047440 401 -----IYKLTFNQNTLPGWIMAVAWLFYLVWLC 428 (619)
Q Consensus 401 -----~~~w~w~~~~~~~~~~~~~~~~~~~~~~ 428 (619)
..+|+ ..|++.+++.+++.++.+
T Consensus 419 ~~~~~~~~~~-----~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 419 IFGYTLTGWA-----GTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccccccChH-----HHHHHHHHHHHHHHHHHH
Confidence 11343 377777666555544443
No 148
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.21 E-value=3.9e-10 Score=121.78 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=102.1
Q ss_pred hccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 267 IVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 267 ~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
....+|.+.+ ++|.+..+.|++.+.+.++.+++.+++|+++||+|||++++.+.+.. ++.++.... ...+.+.+.+.
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 372 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-GGANVWVLGLL 372 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHH
Confidence 4466788885 78999999999999999999999999999999999999887665543 433333222 11344444444
Q ss_pred HHHhhc-cCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 345 RLFCGF-GSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 345 r~l~G~-~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
.++.|+ +.+. +..++++.+.+|+++|++++|+......+|..+||+++|++.+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~ 429 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL 429 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC
Confidence 444433 3344 667788999999999999999999999999999999999998765
No 149
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.20 E-value=2.8e-10 Score=118.69 Aligned_cols=173 Identities=17% Similarity=0.094 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchh--HHHHHHHHHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKP--LVFSSIVLFIG 325 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~--~~~~~~~~~i~ 325 (619)
.++...+..++............|.+..+ +|.+..+.+++.+...++..++.+++|+++||+|||+ +........++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 295 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIA 295 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 34444455555555666666777877764 7999999999999999999999999999999999986 22211111111
Q ss_pred ---HHHHHHhh-ccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 326 ---NVMYALAY-DFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 326 ---~~l~~~~~-~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
..+..+.. ..++.+..+...++.+++.+. +...++++|.+|+++|++++|+.+....+|..+||.+.|++.+..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 296 GLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 11111110 013444444444455555555 8889999999999999999999999999999999999999977653
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHh
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLC 428 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+|.+ .+++.+++.++..+..+
T Consensus 376 --~~~~-----~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 376 --SFAG-----ALMVVAALALIGALSYL 396 (399)
T ss_pred --chhH-----HHHHHHHHHHHHHHHHH
Confidence 2555 66666666555544443
No 150
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.19 E-value=4.7e-10 Score=116.38 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=115.0
Q ss_pred hccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 267 IVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 267 ~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
....+|.+. +++|.++.+.|++.+...+...++.++.|+++||+|||+++..+.+.. ++.++..+. ++.+.+++.
T Consensus 218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 294 (375)
T TIGR00899 218 YIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---NSLWALLML 294 (375)
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 334456665 568999999999988888788888999999999999999887666544 444444555 678888888
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHH
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~ 422 (619)
+++.|++.+. +....++.|..|+ +++.++++++....+|..+||.++|++.+.. +|++ .|++.+++.++
T Consensus 295 ~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---g~~~-----~~~~~~~~~~~ 365 (375)
T TIGR00899 295 QLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW---SYHA-----VYWFAIVMLIV 365 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchh-----HHHHHHHHHHH
Confidence 8899988776 6777888888875 5679999999999999999999999997655 3444 77777776555
Q ss_pred HHHHH
Q 047440 423 YLVWL 427 (619)
Q Consensus 423 ~~~~~ 427 (619)
..++.
T Consensus 366 ~~~~~ 370 (375)
T TIGR00899 366 ALFCL 370 (375)
T ss_pred HHHHH
Confidence 55444
No 151
>PRK03699 putative transporter; Provisional
Probab=99.19 E-value=3.3e-10 Score=118.36 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
.+..+..++...........+|.+.+ .+|.+..+.|++.+.+.++..++.++.|+++||+|+|+++....+.. ++.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 208 LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 33344444444455556677888885 57999999999999999999999999999999999999876655444 44444
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
.... ++.+.+.+..++.|++.+. +...++..+..| +.++...|....+..+|..+||.+.|++.+.. +++
T Consensus 288 ~~~~---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~---g~~- 359 (394)
T PRK03699 288 FVNT---DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF---GLQ- 359 (394)
T ss_pred HHHc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh---Cch-
Confidence 4455 6676677777788887665 666667777665 44677888888889999999999999997765 333
Q ss_pred cccchhHHHHHHHHHHHHHHH
Q 047440 407 NQNTLPGWIMAVAWLFYLVWL 427 (619)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~ 427 (619)
.++++.+++.+++.++.
T Consensus 360 ----~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 360 ----AALLTANGLYAVVFVMC 376 (394)
T ss_pred ----hhhhhhHHHHHHHHHHH
Confidence 36777666655554443
No 152
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.16 E-value=2.3e-10 Score=119.38 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHH-HHHHHH-H
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSI-VLFIGN-V 327 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~-~~~i~~-~ 327 (619)
.......++...........+|.+. +++|.+..+.+++.+...++..++.+++|+++||+|||+++..+. +..+.. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 301 (394)
T TIGR00883 222 LLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVP 301 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3334444444445555666778887 468999999999999999999999999999999999999765433 333222 2
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHH-HHHHHHHHhHHHHHHhhhhhccccccce
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAG-FVSASALGMACGPALAGLLQTNFKIYKL 404 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~w 404 (619)
+........+.+.++++.++.|++.+. +...+++.|.+|++.|++++++ ...+..+|..++|.++|++.+..+ .|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~ 379 (394)
T TIGR00883 302 LLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DW 379 (394)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cc
Confidence 221111124667777777888887765 7888999999999999999998 456677899999999999987664 35
Q ss_pred ec
Q 047440 405 TF 406 (619)
Q Consensus 405 ~w 406 (619)
++
T Consensus 380 ~~ 381 (394)
T TIGR00883 380 YA 381 (394)
T ss_pred hh
Confidence 55
No 153
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.15 E-value=7.7e-10 Score=117.13 Aligned_cols=173 Identities=12% Similarity=-0.009 Sum_probs=115.1
Q ss_pred HHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhcccc--C-chhHHHHHHH-HHHHHH
Q 047440 253 NLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS--Y-FKPLVFSSIV-LFIGNV 327 (619)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~--G-rr~~~~~~~~-~~i~~~ 327 (619)
..++.++.......+...+|.+.. ++|.+..+.++..+.+.++..++.+++|+++||+ + |++......+ ..++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~ 327 (434)
T PRK11663 248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHH
Confidence 333344444444455567788884 5799999999999999999999999999999998 3 3333222111 111111
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccccee
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLT 405 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~ 405 (619)
+.... ...+.+.+.+..++.|++... .....+++|.+|+++|+.++|+.++...+|.++||.+.|++.+.. +|
T Consensus 328 ~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~---g~- 402 (434)
T PRK11663 328 SLWLM-PFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW---HW- 402 (434)
T ss_pred HHHHc-ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc---cc-
Confidence 11111 113444444444555554332 334566789999999999999999999999999999999997765 33
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCC
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 434 (619)
...|++.+++.++..+..++..++.
T Consensus 403 ----~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 403 ----TGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3478777777766666665555443
No 154
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.13 E-value=1.2e-09 Score=113.60 Aligned_cols=140 Identities=15% Similarity=0.090 Sum_probs=112.6
Q ss_pred HHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhcc
Q 047440 257 TFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDF 335 (619)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~ 335 (619)
.++............|.+.++.|.+....|.+.++..++..++.++.|++.||+|+|+++..+.+.. ++.++.+.+
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--- 290 (382)
T PRK11128 214 VSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--- 290 (382)
T ss_pred HHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh---
Confidence 3333333444445567788889999999999999999999999999999999999999887777655 666666777
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHH-HHHHHHhHHHHHHhhhhhcccc
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFV-SASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.+.+++..++.|++.+. +....++.+. ++++++++.+... ...++|..+||.++|.+.+.++
T Consensus 291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 291 TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999887 7777888776 5666788888875 6677888999999999987664
No 155
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.13 E-value=1.4e-09 Score=114.67 Aligned_cols=179 Identities=18% Similarity=0.187 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCch--hHHHHHHHHH-
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFK--PLVFSSIVLF- 323 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr--~~~~~~~~~~- 323 (619)
+.+...+++.++..-+...+......+.. ++|++..+...+.-+..+..++|++++|++.||+|.| ++++.++++.
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 44555556666655555556666666776 6999999999999999999999999999999999998 7777776544
Q ss_pred HHHHHHHH--h---hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 324 IGNVMYAL--A---YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 324 i~~~l~~~--~---~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
+..+...+ . ....+.+.+++.-++.|++.|. +.+.++.+++.|+++.+..+|++....-....+||++.|.+.
T Consensus 361 ~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~ 440 (477)
T PF11700_consen 361 IIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT 440 (477)
T ss_pred HHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222222 0 0127788899999999999888 999999999999999999999999999999999999999997
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhccCC
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 434 (619)
+..+ +-|+ .++...++.++.++++ +.++..
T Consensus 441 ~~tg--~~r~-----g~~~l~~lf~~gl~ll-~~v~~~ 470 (477)
T PF11700_consen 441 DATG--SQRY-----GFLFLLVLFLIGLILL-FFVDVE 470 (477)
T ss_pred HHhC--Cchh-----HHHHHHHHHHHHHHHH-hhccch
Confidence 7665 4444 5666666645444444 444543
No 156
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.13 E-value=1.2e-09 Score=115.61 Aligned_cols=132 Identities=13% Similarity=0.072 Sum_probs=98.8
Q ss_pred hccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHH
Q 047440 267 IVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGR 345 (619)
Q Consensus 267 ~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r 345 (619)
+...+|.+..+.|.++...+.+.++..++..++.+++|+++||+|||+++..+.+.. ++.++.... ...+...+.+..
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 328 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-ccccHHHHHHHH
Confidence 445678888888999999999999999999999999999999999999887777654 433333322 112222222222
Q ss_pred HHhhccC-cc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 346 LFCGFGS-AR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 346 ~l~G~~~-~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
+..+++. +. +..+.++.|.+|++.||+++|+......+|..+||.++|++.+.+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 2222222 22 556678899999999999999999999999999999999997765
No 157
>PRK09952 shikimate transporter; Provisional
Probab=99.12 E-value=2e-09 Score=114.05 Aligned_cols=168 Identities=14% Similarity=0.127 Sum_probs=112.1
Q ss_pred HHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhh-ccC
Q 047440 260 YMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAY-DFS 336 (619)
Q Consensus 260 ~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~-~~~ 336 (619)
.....+......|.+.. .+|.+......+..+..+..+++.+++|+++||+|||++++.+.+.. ++.+.+.... ..+
T Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (438)
T PRK09952 262 ELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQS 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344445556676765 57888876666666677777889999999999999999887665543 3332222211 113
Q ss_pred cHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHH-HHHHHHhHHHHHHhhhhhccccccceeccccchhH
Q 047440 337 SIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFV-SASALGMACGPALAGLLQTNFKIYKLTFNQNTLPG 413 (619)
Q Consensus 337 ~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~ 413 (619)
+.+.+++..++.|++.+. +...++++|.+|.+.|+.+.|+.. .+..+|..++|.+.+++.+..+ ++|.+ ++
T Consensus 342 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~-----~~ 415 (438)
T PRK09952 342 IFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHS-----VA 415 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchH-----HH
Confidence 344555556666777665 677899999999999999999854 4455899999999999965432 13433 66
Q ss_pred HHHHHHHHHHHHHHhhhccCC
Q 047440 414 WIMAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~pe~ 434 (619)
...+++.++..+.. +.++|+
T Consensus 416 ~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 416 IYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHH-HHcccc
Confidence 66666655555544 345653
No 158
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.11 E-value=1.7e-09 Score=116.31 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=116.5
Q ss_pred hHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcH-HHH
Q 047440 264 TYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSI-AVL 341 (619)
Q Consensus 264 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~-~~l 341 (619)
........|.+..++|.+....++......++.+++.+++|+++||+|||++++.+.++. ++.++++........ ...
T Consensus 287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 344455668888889988877788888888899999999999999999999888777654 555555433111111 122
Q ss_pred HHHHHHhhcc--Ccc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh------ccccccceeccccchh
Q 047440 342 LIGRLFCGFG--SAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ------TNFKIYKLTFNQNTLP 412 (619)
Q Consensus 342 ~~~r~l~G~~--~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~------~~~~~~~w~w~~~~~~ 412 (619)
+++.++.+++ .+. +...++++|.+|+++|+.++|+......+|.++++.+.+.+. +.. +|.+ +
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~---~~~~-----~ 438 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF---HNGF-----S 438 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc---cCcc-----H
Confidence 2233333333 333 677899999999999999999999999999998876665543 222 3444 6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCch
Q 047440 413 GWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
|++.+++.++..++.+++.||+..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 439 YWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred HHHHHHHHHHHHHHHHhccccCCC
Confidence 777777767777777777787654
No 159
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.11 E-value=4.2e-09 Score=109.21 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=122.8
Q ss_pred hhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCc-H--
Q 047440 263 NTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSS-I-- 338 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~-~-- 338 (619)
+..........+.++-|++....-++.....+...++.+++..+.||.|||++++.+..+. +..+++..+....+ .
T Consensus 285 Gi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (485)
T KOG0569|consen 285 GINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGS 364 (485)
T ss_pred CcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555556677788999999999999999999999999999999999999998877654 44444443311111 1
Q ss_pred H---HHHHHHHH--hhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchh
Q 047440 339 A---VLLIGRLF--CGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLP 412 (619)
Q Consensus 339 ~---~l~~~r~l--~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~ 412 (619)
| ..+++.++ .+++.|. |+..-+.+|.+|++.|+.++++..+...++..+-...-..+....| ...
T Consensus 365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---------~~~ 435 (485)
T KOG0569|consen 365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---------PYV 435 (485)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------chh
Confidence 1 12333333 3445565 8889999999999999999999888888877776666666655554 226
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhh
Q 047440 413 GWIMAVAWLFYLVWLCISFKEPSRDI 438 (619)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~pe~~~~~ 438 (619)
|++..+.+++..+..++.+||+..+.
T Consensus 436 filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 436 FILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 77777888888899999999997543
No 160
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.11 E-value=9.7e-10 Score=115.20 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=105.0
Q ss_pred hhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH-HHHHhhccCcHHHHH
Q 047440 266 IIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV-MYALAYDFSSIAVLL 342 (619)
Q Consensus 266 ~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~-l~~~~~~~~~~~~l~ 342 (619)
.....+|.+.. ++|.+..+.+++.+...++.+++.++.|+++||+|||+.+..+.+.. +..+ +.... .+.+.+.
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 332 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG---ANVAVLG 332 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC---CchHHHH
Confidence 34455666665 58999999999999999999999999999999999999887666543 2222 22223 5666666
Q ss_pred HHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 343 IGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 343 ~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.++.|++.+. +...+++.|.+|+++|++++|+.+....+|..+||+++|++.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666665444 7778899999999999999999999999999999999999987664
No 161
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.11 E-value=1.6e-09 Score=115.59 Aligned_cols=152 Identities=19% Similarity=0.242 Sum_probs=124.1
Q ss_pred hHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHH
Q 047440 264 TYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 264 ~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l 341 (619)
...+...+|.+.++ +|.++...|++.+++.+|.++|+++.+++.+|+++++++..+.+.. ++.+..+++ ++.|..
T Consensus 234 ~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~---~~~~~~ 310 (524)
T PF05977_consen 234 ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS---PSFWLA 310 (524)
T ss_pred hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---hHHHHH
Confidence 33344567888765 8999999999999999999999999999999999888776666554 777888888 899999
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHH
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVA 419 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~ 419 (619)
+++-++.|++... +...+.+-...|++.||+++|++.+....|..+|.++.|.+.+.++ ....+.+.++.
T Consensus 311 ~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g--------~~~al~~a~~~ 382 (524)
T PF05977_consen 311 LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG--------VRTALLIAGAA 382 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------HHHHHHHHHHH
Confidence 9999999998777 6777888899999999999999999999999999999999987664 23355555554
Q ss_pred HHHHHHH
Q 047440 420 WLFYLVW 426 (619)
Q Consensus 420 ~~~~~~~ 426 (619)
.++..++
T Consensus 383 lll~~~~ 389 (524)
T PF05977_consen 383 LLLSALI 389 (524)
T ss_pred HHHHHHH
Confidence 4444333
No 162
>TIGR00895 2A0115 benzoate transport.
Probab=99.09 E-value=1.2e-09 Score=114.10 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=109.4
Q ss_pred HHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHH-hhc
Q 047440 256 NTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYAL-AYD 334 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~-~~~ 334 (619)
..++...........+|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+++....+..+...+... .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 335 (398)
T TIGR00895 258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTL-- 335 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--
Confidence 3334444445555567778888999999999999999999999999999999999999555444444433333322 4
Q ss_pred cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 335 FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 335 ~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
.+.+.+++..++.|++.+. +...+++.+.+|+++|++++|+......+|..+||+++|++
T Consensus 336 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 336 -FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred -hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 6777778888889998776 78889999999999999999999999999999999999875
No 163
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.09 E-value=4.5e-08 Score=98.98 Aligned_cols=162 Identities=13% Similarity=0.133 Sum_probs=120.5
Q ss_pred HhhccChHHHHHH--hCCccchhh-HHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHH
Q 047440 265 YIIVPTADDYSMS--LGAAATVCG-IVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAV 340 (619)
Q Consensus 265 ~~~~~~~~~~~~~--~g~s~~~~g-~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~ 340 (619)
--.-|.+..|..+ .|++..++. -+.-+..-.+++..++...+.|..|.|++++.+.+.. +..++..+. ++.+.
T Consensus 20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~---~sv~~ 96 (412)
T PF01770_consen 20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG---TSVLA 96 (412)
T ss_pred CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---CcHHH
Confidence 3444555555554 678777664 4555556667888889999999999999998877765 777778888 99999
Q ss_pred HHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHH
Q 047440 341 LLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVA 419 (619)
Q Consensus 341 l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~ 419 (619)
+-+..++.|++.+. .+..+|+=..+|+++-.++.+...++..+|..+|.++|-.+...- +. .+....++....
T Consensus 97 mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~---~~---sy~~L~~isl~~ 170 (412)
T PF01770_consen 97 MQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG---GV---SYFQLNYISLAS 170 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC---CHHHHHHHHHHH
Confidence 99999999999999 899999999999999999999999999999999988888774311 11 134455555444
Q ss_pred HHHHHHHHhhhccCCch
Q 047440 420 WLFYLVWLCISFKEPSR 436 (619)
Q Consensus 420 ~~~~~~~~~~~~pe~~~ 436 (619)
..++++ ..+++|.+++
T Consensus 171 ~~~a~~-~~~fLP~~~~ 186 (412)
T PF01770_consen 171 VSLALL-IALFLPMPKR 186 (412)
T ss_pred HHHHHH-HHHHcCCCCc
Confidence 333333 3455677654
No 164
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.09 E-value=1.1e-09 Score=112.92 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=110.8
Q ss_pred cChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccC-cHHHHHHHH
Q 047440 269 PTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFS-SIAVLLIGR 345 (619)
Q Consensus 269 ~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~-~~~~l~~~r 345 (619)
...|.+..+ +|.+..+.|++.+...++.+++.++.|++.||+|||+++..+.+.. ++.++..+. + +++.++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 308 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT---PPNFPLFLVLW 308 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHH
Confidence 566778776 8999999999999999999999999999999999999887766544 566666655 5 488888889
Q ss_pred HHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 346 LFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
++.|++.+. +...+++.|.+|+++|++++|+.+....+|..+||.++|++.+.+
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999887 788899999999999999999999999999999999999987643
No 165
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.09 E-value=2.4e-09 Score=113.97 Aligned_cols=170 Identities=14% Similarity=0.010 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhcccc--CchhHH-HHH-HHHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS--YFKPLV-FSS-IVLFI 324 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~--Grr~~~-~~~-~~~~i 324 (619)
++...+..++.....+.....+|.+.++ .|.+..+.+++.+++.++.+++.+++|+++||+ |||... +.. .+..+
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~ 334 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI 334 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 3334444444444445556688888886 789989999999999999999999999999998 555432 222 22223
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhH-HHHHHhhhhhccccc
Q 047440 325 GNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMA-CGPALAGLLQTNFKI 401 (619)
Q Consensus 325 ~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~g~~i~~~l~~~~~~ 401 (619)
+.++..+. ...+.+.++++.++.|.+... .....++.|.+|++.||+++|+.+....+|.. +||.++|++.+.+
T Consensus 335 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-- 411 (452)
T PRK11273 335 ATIVYWLN-PAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-- 411 (452)
T ss_pred HHHHHHHh-cccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh--
Confidence 33222222 113455555555555554333 33345678999999999999999888777754 5899999998766
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHh
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLC 428 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+|++ .|++.+++++++.+...
T Consensus 412 -g~~~-----~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 412 -GWDG-----GFMVMIGGSILAVILLI 432 (452)
T ss_pred -cchH-----HHHHHHHHHHHHHHHHH
Confidence 3444 77777766565555444
No 166
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.08 E-value=4.4e-09 Score=105.74 Aligned_cols=175 Identities=21% Similarity=0.274 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH-H
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL-F 323 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~-~ 323 (619)
+.+.++..+...++...+.+....++.++.++ .|.+.+.++++..++.++.++|.++.|+++|| +.++.+.....+ .
T Consensus 209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a 287 (394)
T COG2814 209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA 287 (394)
T ss_pred cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence 33455556666666666666555555555554 79999999999999999999999999999999 777777666443 3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc
Q 047440 324 IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI 401 (619)
Q Consensus 324 i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~ 401 (619)
+..+.+.+. ..+.+..++.-++.|++.+. ......+++ ..++.+..+.++....+++|..+|..+||.+.++++
T Consensus 288 ~~~l~l~~~--~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g- 363 (394)
T COG2814 288 LALLALTFT--GASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG- 363 (394)
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 433333333 16666777777777776554 344445555 446889999999999999999999999999988764
Q ss_pred cceeccccchhHHHHHHHHHHHHHHHhhhcc
Q 047440 402 YKLTFNQNTLPGWIMAVAWLFYLVWLCISFK 432 (619)
Q Consensus 402 ~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~p 432 (619)
+..+.++.+++.++.+++.+...+
T Consensus 364 -------~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 364 -------YAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455788888887777666655443
No 167
>PRK15075 citrate-proton symporter; Provisional
Probab=99.05 E-value=4.1e-09 Score=111.60 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=99.5
Q ss_pred HHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH-HHHHhhcc
Q 047440 259 LYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV-MYALAYDF 335 (619)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~-l~~~~~~~ 335 (619)
.............|.+.++ +|.+..+.+++...+.++..++.+++|+++||+|||++++.+.+.. +..+ ........
T Consensus 249 ~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 328 (434)
T PRK15075 249 MTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAA 328 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455566778888876 7999999999999999999999999999999999999876654332 2111 11111111
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHH-HHHHHhHHHHHHhhhhhccc
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVS-ASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~i~~~l~~~~ 399 (619)
+++..+.+..++.|++.+. +....++.|.+|++.|+.++|+... +..++..++|.+.+++.+..
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 3444444444555555555 5566788999999999999998644 44455778999999997765
No 168
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.05 E-value=2.7e-09 Score=105.98 Aligned_cols=177 Identities=16% Similarity=0.073 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccc-c-CchhHH-HHHHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-S-YFKPLV-FSSIVLF 323 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~-Grr~~~-~~~~~~~ 323 (619)
+.+++++++.++..+..+.+.-..|.|..+ .|.|....++..+++-++.+.|++++|+++|| + |||... ++.++..
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 566777788888888888888899999887 69999999999999999999999999999999 4 777654 4444433
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHH-HhHHHHHHhhhhhccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASAL-GMACGPALAGLLQTNF 399 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~~ 399 (619)
++.+.+.+++. .|+++..++-++.|+..-+ ........|..|++--|.+.|+.+.+..+ |.+++....|++.+.+
T Consensus 332 ~~~~~~~w~~~~-~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~ 410 (448)
T COG2271 332 TASLVLYWLAPN-GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW 410 (448)
T ss_pred HHHHHHHHcCCC-ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence 55555555522 4668888888899998766 45556678999999999999999998888 8888888888887764
Q ss_pred cccceeccccchhHHHHHHHHHHHHHHHhhhccC
Q 047440 400 KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKE 433 (619)
Q Consensus 400 ~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe 433 (619)
||.+ .|++..+.++++.+++......
T Consensus 411 ---gW~g-----~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 411 ---GWDG-----GFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred ---CCcc-----hHHHHHHHHHHHHHHHHHHHhh
Confidence 5555 5666655555555554444443
No 169
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.03 E-value=7.2e-09 Score=111.93 Aligned_cols=173 Identities=13% Similarity=0.010 Sum_probs=106.9
Q ss_pred hhhHhhccChHHHHHHhCCccchhhH------------HHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 262 VNTYIIVPTADDYSMSLGAAATVCGI------------VIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 262 ~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
+.++......|.+.++.|.+....+. ...+..++.+++.+++++++||+|||++++.+.+.. ++.++
T Consensus 302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~ 381 (502)
T TIGR00887 302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFV 381 (502)
T ss_pred HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Confidence 34444555678888888886543221 233445566778889999999999999887666543 44444
Q ss_pred HHHhhcc-CcHHHHHHHHHHhhc-cCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc-ccce
Q 047440 329 YALAYDF-SSIAVLLIGRLFCGF-GSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK-IYKL 404 (619)
Q Consensus 329 ~~~~~~~-~~~~~l~~~r~l~G~-~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~-~~~w 404 (619)
.++.... .+...+.+.-+...+ +.+. +....+.+|.+|.+.|++++|+.+....+|.+++|.+.+++.+..+ .+|+
T Consensus 382 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (502)
T TIGR00887 382 LGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGY 461 (502)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccc
Confidence 4433110 111111111111122 2233 6677788999999999999999999999999999999998865221 0000
Q ss_pred --eccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 405 --TFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 405 --~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
.+ .+..+|++.+++.++..++ .+++||+..
T Consensus 462 ~~~~-~~~~~~~i~~~~~~~~~i~-~~~lpEt~~ 493 (502)
T TIGR00887 462 PTGI-WMGHVLEIFALFMFLGILF-TLLIPETKG 493 (502)
T ss_pred cccc-cchHHHHHHHHHHHHHHHH-heEeccCCC
Confidence 00 1233667777666655544 467798765
No 170
>PRK10504 putative transporter; Provisional
Probab=99.01 E-value=6.3e-09 Score=111.56 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
...+...++............|.+.+. +|.++.+.+++.....++..++.+++|+++||+|+|+++..+.+.. ++.++
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 343 (471)
T PRK10504 264 SLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLL 343 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 333444444444555555667777774 8999999999999999999999999999999999999887776644 55555
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
..+.....+.+.+.+..++.|++.+. +....++.+.+|++.++.++|+.+....+|..+|+.++|.+....
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 344 FMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44432223444455566777777666 677788889999999999999999999999999999999885433
No 171
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.01 E-value=5.5e-09 Score=109.09 Aligned_cols=160 Identities=13% Similarity=-0.042 Sum_probs=109.8
Q ss_pred HHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHH-HHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH-hh-
Q 047440 258 FLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAI-AQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL-AY- 333 (619)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~-~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~-~~- 333 (619)
++............+.+..|.|.++.++|++.++..+ +..++.++.|++.||+|+|+++..+.+.. +..++... ..
T Consensus 218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (390)
T TIGR02718 218 LLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF 297 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333334444445677888899999999999888764 66778899999999999999887665443 22222211 10
Q ss_pred -ccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCcc-chhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecccc
Q 047440 334 -DFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPL-KIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQN 409 (619)
Q Consensus 334 -~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~ 409 (619)
...+.+.++...++.+++.+. +...+.+.+..++ +.+++.++..+...++|..+||.++|++.+..+ +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G--------~ 369 (390)
T TIGR02718 298 WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG--------Y 369 (390)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------c
Confidence 013344444555555655555 5666666666665 889999999999999999999999999977653 3
Q ss_pred chhHHHHHHHHHHHHH
Q 047440 410 TLPGWIMAVAWLFYLV 425 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (619)
...|++.+++.++..+
T Consensus 370 ~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 370 AGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4477776665554433
No 172
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.98 E-value=9.1e-09 Score=105.94 Aligned_cols=136 Identities=22% Similarity=0.164 Sum_probs=101.9
Q ss_pred HhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcccc-CchhHHHHHHHHH-HHHHHHHHhhccCcH
Q 047440 261 MVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS-YFKPLVFSSIVLF-IGNVMYALAYDFSSI 338 (619)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-Grr~~~~~~~~~~-i~~~l~~~~~~~~~~ 338 (619)
..........+|.+.++.|.+..+.|++.+++.++.++++++.|+++||+ +||+++..+.+.. ++.+++.+. .+.
T Consensus 210 ~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 286 (355)
T TIGR00896 210 SGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA---PMH 286 (355)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh---hhh
Confidence 33444455667888888999999999999999999999999999999999 4666665555444 555555554 332
Q ss_pred HHHHHHHHHhhccCcc--hhhhhhhhccC-ccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 339 AVLLIGRLFCGFGSAR--AVNRRYISDCV-PLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 339 ~~l~~~r~l~G~~~~~--~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+... .-++.|++.+. +...+.+.+.. ++++++...++.+....+|..+||.++|++.+..+
T Consensus 287 ~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 287 GLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 34677888877 66666666544 45677899999888889999999999999988775
No 173
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.97 E-value=7e-09 Score=108.97 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHh--CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhH-HHHHHHHH-HH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSL--GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPL-VFSSIVLF-IG 325 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~-~~~~~~~~-i~ 325 (619)
++...+..++.....+.+...+|.+.+++ |.+..+.+++.+...++..++.+++|+++||+|+|+. +....+.. ++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH
Confidence 33444444555555666777899999885 5677888999999999999999999999999997764 33333332 33
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccc
Q 047440 326 NVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYK 403 (619)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~ 403 (619)
.++.... .+....+++-++.++|... +.......+.+|+++|+.++|+.+....+|.+++|.+.|.+.+..+ +
T Consensus 324 ~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~ 398 (412)
T TIGR02332 324 WLLASAT---DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--S 398 (412)
T ss_pred HHHHHhc---CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--C
Confidence 2222112 2222222222233333322 3444555678899999999999999999999999999999987765 5
Q ss_pred eeccccchhHHHHHHH
Q 047440 404 LTFNQNTLPGWIMAVA 419 (619)
Q Consensus 404 w~w~~~~~~~~~~~~~ 419 (619)
|.+ .+++.+++
T Consensus 399 ~~~-----~~~~~~~~ 409 (412)
T TIGR02332 399 FNS-----GLWFVAAL 409 (412)
T ss_pred Cch-----hHHHHHHH
Confidence 665 55554443
No 174
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.97 E-value=6.4e-09 Score=108.83 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=116.7
Q ss_pred ChHHHHHHh----CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 270 TADDYSMSL----GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 270 ~~~~~~~~~----g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
..|.+..+. +.+....|.+.++..+...++.++.|++.||+|+|+++..+.++. ++.++...+ ++.+.++++
T Consensus 237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~---~~~~~~~~~ 313 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA---TTALEVVIL 313 (396)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc---CChHHHHHH
Confidence 456666653 455667899999999999999999999999999999887766544 666665666 888888889
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHH-HHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHH
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAG-FVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWL 421 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~ 421 (619)
.++.|++.+. .....++.+..+++.++...+. .+....+|.+++|+++|++.+..| |..+|++.+++.+
T Consensus 314 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G--------~~~~f~~~~~~~~ 385 (396)
T TIGR00882 314 KMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG--------FQGAYLVLGCIVL 385 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc--------cHHHHHHHHHHHH
Confidence 9999988665 4566677888888888877766 678899999999999999987664 4558888888877
Q ss_pred HHHHHHhh
Q 047440 422 FYLVWLCI 429 (619)
Q Consensus 422 ~~~~~~~~ 429 (619)
+..++..+
T Consensus 386 i~~~~~~~ 393 (396)
T TIGR00882 386 LFTLISVF 393 (396)
T ss_pred HHHHHHHH
Confidence 76666554
No 175
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.97 E-value=7e-09 Score=109.98 Aligned_cols=166 Identities=13% Similarity=0.027 Sum_probs=112.6
Q ss_pred HhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchh-HHHHHHHH--H-HHHHHHHHhhcc
Q 047440 261 MVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKP-LVFSSIVL--F-IGNVMYALAYDF 335 (619)
Q Consensus 261 ~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~-~~~~~~~~--~-i~~~l~~~~~~~ 335 (619)
....+.....+|.+.++ .|.++.+.+++.+++.++.+++.+++|+++||+|+++ ......+. . ++.+++... +.
T Consensus 264 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 342 (438)
T TIGR00712 264 YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN-PA 342 (438)
T ss_pred HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc-CC
Confidence 33344455677888876 6999999999999999999999999999999986433 33222111 1 222222221 11
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHH-hHHHHHHhhhhhccccccceeccccchh
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALG-MACGPALAGLLQTNFKIYKLTFNQNTLP 412 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~g~~i~~~l~~~~~~~~w~w~~~~~~ 412 (619)
.+.+...+..++.|++... ......+.|.+|++.|+.++|+.+....+| .++||.+.|++.+.. +|.+ .
T Consensus 343 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~---g~~~-----~ 414 (438)
T TIGR00712 343 GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDG-----G 414 (438)
T ss_pred CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc---cchH-----H
Confidence 3444444444555654333 233356789999999999999998877766 578999999998765 3333 7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCc
Q 047440 413 GWIMAVAWLFYLVWLCISFKEPS 435 (619)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~pe~~ 435 (619)
+++.+++.+++.+..++.+||..
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 415 FMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 77777777777777777878754
No 176
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.7e-08 Score=101.00 Aligned_cols=145 Identities=17% Similarity=0.119 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc----cCchhHH-HHHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR----SYFKPLV-FSSIVL 322 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~Grr~~~-~~~~~~ 322 (619)
+.++......+...+++..-...++++..++|++..+.+.+-....+...+.+|+.|..+|| +|||+-+ ..+.+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 34455555555556677777888899999999999999999999999999999999999998 8887744 333333
Q ss_pred -HHHHHHHHHhhccCcHH------------HHHHHHHHhhc-----cCcc--hhhhhhhhccCccchhhh-HhHHHHHHH
Q 047440 323 -FIGNVMYALAYDFSSIA------------VLLIGRLFCGF-----GSAR--AVNRRYISDCVPLKIRMQ-ASAGFVSAS 381 (619)
Q Consensus 323 -~i~~~l~~~~~~~~~~~------------~l~~~r~l~G~-----~~~~--~~~~~~i~~~~~~~~r~~-~~~~~~~~~ 381 (619)
.++.++.+++ .++. ..-+.-++.|+ +.-. ..+.++++|...++++.+ +++++..+.
T Consensus 112 i~~~l~Lig~a---aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~ 188 (498)
T KOG0637|consen 112 IAVSLFLIGYA---ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFM 188 (498)
T ss_pred HHHHHhhhhhH---hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHH
Confidence 3676676666 2221 12233334444 3323 788999999997776666 999999999
Q ss_pred HHHhHHHHHHhhhh
Q 047440 382 ALGMACGPALAGLL 395 (619)
Q Consensus 382 ~~G~~~g~~i~~~l 395 (619)
++|.++|..+++++
T Consensus 189 avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 189 AVGNVLGYALGSYL 202 (498)
T ss_pred Hhcceeeeeccccc
Confidence 99999999888855
No 177
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.96 E-value=2.4e-08 Score=104.17 Aligned_cols=141 Identities=20% Similarity=0.125 Sum_probs=105.4
Q ss_pred hHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhh
Q 047440 271 ADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCG 349 (619)
Q Consensus 271 ~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G 349 (619)
.|.+.+++|.+....|++.+.+.++..++.++.|++.||.+++.++....+.. ++.++.... ++.+.+.+..++.|
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~l~G 316 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWG---SDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Confidence 46677789999999999999999999999999999999965544444444433 334444455 67788888888899
Q ss_pred ccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHH
Q 047440 350 FGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFY 423 (619)
Q Consensus 350 ~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~ 423 (619)
++.+. +...+++.+..| ++++++.+.......+|..+||.++|++.+..+ +..+++..+++.++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g--------~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG--------LTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------hhhHHHHHHHHHHHH
Confidence 88777 666778888776 556788888888889999999999999977653 233555555444333
No 178
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.96 E-value=9.9e-09 Score=107.34 Aligned_cols=154 Identities=14% Similarity=0.076 Sum_probs=110.9
Q ss_pred ccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHH
Q 047440 268 VPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGR 345 (619)
Q Consensus 268 ~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r 345 (619)
...+|.+.++.+.++...|++.++..++..++..+.+++.|| ++.++.+..+.+.. ++.++.+++ ++++.+++..
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~ 304 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---SNLQQLFTLI 304 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHH
Confidence 345777888866678889999888887777666666777664 66565555555443 666666666 7777777777
Q ss_pred HHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHH
Q 047440 346 LFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFY 423 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~ 423 (619)
++.|++.+. |...+++.+.+|+++||+++|+.+.+..+|..+||.++|++.+..+..+. ...++++.+++.++.
T Consensus 305 ~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~----~~~~~~~~~~~~~~~ 380 (400)
T PRK11646 305 CLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQ----PELPWMMLGIIGLIT 380 (400)
T ss_pred HHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCC----cchHHHHHHHHHHHH
Confidence 778887666 77789999999999999999999999999999999999999665321111 123555555554444
Q ss_pred HHHHh
Q 047440 424 LVWLC 428 (619)
Q Consensus 424 ~~~~~ 428 (619)
.+...
T Consensus 381 ~~~~~ 385 (400)
T PRK11646 381 LLALY 385 (400)
T ss_pred HHHHH
Confidence 44433
No 179
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.95 E-value=6.8e-09 Score=124.04 Aligned_cols=130 Identities=21% Similarity=0.125 Sum_probs=108.2
Q ss_pred HhhccChHHHHH-HhCCccc-hhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHH
Q 047440 265 YIIVPTADDYSM-SLGAAAT-VCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVL 341 (619)
Q Consensus 265 ~~~~~~~~~~~~-~~g~s~~-~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l 341 (619)
......+|.+.. .+|.+.. ..|++.++..++.+++++++|+++||+++++++.++.+.. ++.++..+. .+.+.+
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 325 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---PSLASV 325 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---hhHHHH
Confidence 334445566655 5899998 9999999999999999999999999999988776665544 666666666 788888
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
+++.++.|++.+. +...+++.+.+|++.||+++|+.+++..+|.++++.+++.+..
T Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999998887 6778899999999999999999999999999998888877743
No 180
>PRK10054 putative transporter; Provisional
Probab=98.95 E-value=5.5e-09 Score=109.09 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=111.8
Q ss_pred HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc-
Q 047440 277 SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR- 354 (619)
Q Consensus 277 ~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~- 354 (619)
+.+.+....|++.+...+.....+++.|++.||.++|+.+..+++.. ++.++..++ .++.+.++++.++.|+|.+.
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~ 315 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS--GNSLLLWGMSAAVFTVGEIIY 315 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888899999999999999887776554 555555543 15677777788888998776
Q ss_pred -hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccC
Q 047440 355 -AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKE 433 (619)
Q Consensus 355 -~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe 433 (619)
|...+++.+..|++.|+++++..+ ...+|..+||.++|++.+..+ +...|++.++...+..++...-.+|
T Consensus 316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T PRK10054 316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLP--------PWSLFVILALAIVAAWLLMLKGMRA 386 (395)
T ss_pred HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC--------hhhHHHHHHHHHHHHHHHHHhcccc
Confidence 677889999999999999988655 556899999999999987765 3345666656655555555555555
Q ss_pred Cch
Q 047440 434 PSR 436 (619)
Q Consensus 434 ~~~ 436 (619)
+|.
T Consensus 387 ~~~ 389 (395)
T PRK10054 387 RPW 389 (395)
T ss_pred Ccc
Confidence 553
No 181
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.95 E-value=7.1e-09 Score=103.20 Aligned_cols=148 Identities=18% Similarity=0.228 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
+...+++.++..=+...+......+.. ++|++..+..++..+..+..++|++++|++.||+|.|+++..++++. +.++
T Consensus 254 i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~ 333 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAAL 333 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHH
Confidence 333344444433333333344445666 79999999999999999999999999999999999999998888765 5555
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
...+. ..-..++++-.+.|++.|. +.+.+|.++.+|+++-++.+|++......++.+||.+-+.+.+..+
T Consensus 334 ~~~~~---~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 334 YLIFL---EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHc---cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 44454 4455566667888888887 8999999999999999999999999999999999999999966554
No 182
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.5e-08 Score=94.64 Aligned_cols=145 Identities=18% Similarity=0.129 Sum_probs=108.0
Q ss_pred HHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-HH-HHHHHHHHhhccCcHHHHHHHHHHhhcc
Q 047440 274 YSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-LF-IGNVMYALAYDFSSIAVLLIGRLFCGFG 351 (619)
Q Consensus 274 ~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~ 351 (619)
+.+.+|+|+...|.+.+......++.+++.|.++|++|++...+.+.+ .+ ++-....+. ++.=+++..+.|++
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-----~lsPy~~m~~lGLs 365 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-----FLSPYTSMTFLGLS 365 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-----hccHHHHHHHHhhh
Confidence 445699999999999999999999999999999999999976654443 33 454444443 23334556788888
Q ss_pred Ccc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHH
Q 047440 352 SAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWL 427 (619)
Q Consensus 352 ~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~ 427 (619)
.+. ......++-++|+++.|++.|..+...++|..+.|+++|.+.++-+ +..| ...-|.+.+.+++....++
T Consensus 366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g--~y~~--le~ffl~~~~~aL~svgil 439 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG--SYDN--LEAFFLIIGLMALTSVGIL 439 (459)
T ss_pred HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC--chhh--HHHHHHHHHHHHHHHHHHH
Confidence 877 4467888999999999999999999999999999999999977665 4445 2333444444444433333
No 183
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.92 E-value=3e-08 Score=103.14 Aligned_cols=147 Identities=14% Similarity=0.067 Sum_probs=99.2
Q ss_pred HHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH-hhccCcHHHHHHHHHHhh
Q 047440 272 DDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL-AYDFSSIAVLLIGRLFCG 349 (619)
Q Consensus 272 ~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~-~~~~~~~~~l~~~r~l~G 349 (619)
|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+++..+.+.. ++.++... . ++.+..++..++.|
T Consensus 224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~ 300 (382)
T PRK10091 224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG---GMKTASLIFAFICC 300 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHH
Confidence 3344458999999999999999999999999999999999999877666544 55544433 3 45555566666666
Q ss_pred ccCcc--h-hhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHH
Q 047440 350 FGSAR--A-VNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVW 426 (619)
Q Consensus 350 ~~~~~--~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~ 426 (619)
++.+. + .......+..+++.++.+. ......+|..+||.++|++.+..+ +|++ ++++.+++.++....
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~--~~~~-----~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGL--AYNY-----VALPAALLSFAAMSS 371 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHccc--Ccch-----HHHHHHHHHHHHHHH
Confidence 65433 3 3333444445555555543 466788999999999999977543 4544 666666555544444
Q ss_pred Hhhh
Q 047440 427 LCIS 430 (619)
Q Consensus 427 ~~~~ 430 (619)
...+
T Consensus 372 ~~~~ 375 (382)
T PRK10091 372 LLLY 375 (382)
T ss_pred HHHH
Confidence 4433
No 184
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.90 E-value=4.1e-08 Score=103.93 Aligned_cols=160 Identities=11% Similarity=0.000 Sum_probs=98.3
Q ss_pred HhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH-hhccCc
Q 047440 261 MVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL-AYDFSS 337 (619)
Q Consensus 261 ~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~-~~~~~~ 337 (619)
....+.....+|.+.. .+|.+..+.++..++..++..+++++.|+++||+|||++++.+.+.. +..+.... .....+
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS 335 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3344455567788775 47999889999999888888999999999999999998775554332 22221111 111123
Q ss_pred HHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHH-HhHHHHHHhhhhhccccccceeccccchhHH
Q 047440 338 IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASAL-GMACGPALAGLLQTNFKIYKLTFNQNTLPGW 414 (619)
Q Consensus 338 ~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~ 414 (619)
.+..+..-++.+++.+. +....+++|++|++.|+.++|+.+....+ +....|.+.+++. ..+ .| ...++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g--~~-----~~~~~ 407 (432)
T PRK10406 336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIG--ME-----TAFFW 407 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhC--CC-----cHHHH
Confidence 33222222222233333 45667889999999999999997765443 3445778777663 222 12 22455
Q ss_pred HHHHHHHHHHHHHh
Q 047440 415 IMAVAWLFYLVWLC 428 (619)
Q Consensus 415 ~~~~~~~~~~~~~~ 428 (619)
..+++.++.++..+
T Consensus 408 ~~~~~~~i~~~~~~ 421 (432)
T PRK10406 408 YVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555454444444
No 185
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.90 E-value=2.2e-08 Score=106.21 Aligned_cols=142 Identities=18% Similarity=0.218 Sum_probs=103.6
Q ss_pred HHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
+..++............+.+.+. ++ +....+++.++..++.+++.+++|+++||+|+|+++..+.++. ++.++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 307 (437)
T TIGR00792 229 LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA 307 (437)
T ss_pred HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333333333444433 34 4567788888889999999999999999999999887777655 555554443
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCc-------cchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVP-------LKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
..+.+.+++..++.|++.+. +...++++|..+ ++.+|.++|+.+.+..+|..+|+.+.|++.+..
T Consensus 308 --~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 308 --GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 14566777777888888877 777888888765 556899999999999999999999999986544
No 186
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.90 E-value=3.5e-08 Score=103.60 Aligned_cols=130 Identities=15% Similarity=0.035 Sum_probs=99.0
Q ss_pred cChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhh--ccCcHHHHHHH
Q 047440 269 PTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAY--DFSSIAVLLIG 344 (619)
Q Consensus 269 ~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~--~~~~~~~l~~~ 344 (619)
...|.+. +++|.++.+.|+......++..++.++.|+++||+|+|+.+..+.+.. ++.++..+.. ...+.+.++++
T Consensus 236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK15402 236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG 315 (406)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3355565 458999999999888888899999999999999999999887766544 5555554431 12456667778
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
.++.|+|.+. +....... ..++++||++.+..++...+|..+|+.+++++.+..
T Consensus 316 ~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 316 LSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 8888888776 44444443 334589999999999999999999999999996654
No 187
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.89 E-value=1.5e-08 Score=109.18 Aligned_cols=143 Identities=17% Similarity=0.062 Sum_probs=112.4
Q ss_pred HHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
+..++...........+|.+.+. +|.++.+.|+....+.++..++.++.|++.||+|+|+++..+.++. ++.++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~ 345 (495)
T PRK14995 266 VMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT 345 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444566777665 7999999999999999999999999999999999999887777654 555544443
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
....+.+...+..++.|+|.|. +.....+.+..|+++++.+.++.++...+|..+|+.++|.+..
T Consensus 346 ~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 346 DFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred cCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224566667778889999887 6677778888999999999999999999999999999998854
No 188
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.3e-08 Score=107.99 Aligned_cols=171 Identities=15% Similarity=0.265 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCch--hHHHHHHHHH-H
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFK--PLVFSSIVLF-I 324 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr--~~~~~~~~~~-i 324 (619)
+.+++..+...+..+++.+....+|.+..+.|.+..+.+.+.++..+...++.++.|+++|+...+ .+..++++.. +
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 455666677777788888889999999999999999999999999999999999999999998733 3445566554 7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc
Q 047440 325 GNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY 402 (619)
Q Consensus 325 ~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~ 402 (619)
+.+.++++ ++++.+++.-.+.|++.|. ......+.|.++.++-+.+.|+..++.+++.++||+++|++.+..+
T Consensus 378 ~~~~~p~~---~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-- 452 (509)
T KOG2504|consen 378 ARLFLPFA---TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-- 452 (509)
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--
Confidence 77777888 9999999999999999998 4445688999999999999999999999999999999998876664
Q ss_pred ceeccccchhHHHHHHHHHHHHHHHh
Q 047440 403 KLTFNQNTLPGWIMAVAWLFYLVWLC 428 (619)
Q Consensus 403 ~w~w~~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+| ...|+..++..++..++.+
T Consensus 453 ~Y-----~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 453 NY-----DHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred Ce-----eeehhhcChHHHHHHHHHH
Confidence 33 4478888877665554443
No 189
>TIGR00898 2A0119 cation transport protein.
Probab=98.88 E-value=2e-08 Score=108.72 Aligned_cols=147 Identities=12% Similarity=0.053 Sum_probs=101.5
Q ss_pred HHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCc
Q 047440 275 SMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSA 353 (619)
Q Consensus 275 ~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~ 353 (619)
...++.+.. +...+..+..+++.++.++++||+|||+++.++.+.. ++.++..+... ...+..++..++.+++.+
T Consensus 350 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 425 (505)
T TIGR00898 350 LGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-DLYFLRTALAVLGKFGIT 425 (505)
T ss_pred ccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHH
Confidence 334454432 3334456677788899999999999999888777655 66665555511 222444455555555554
Q ss_pred c--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhc
Q 047440 354 R--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISF 431 (619)
Q Consensus 354 ~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (619)
. +....+.+|.+|++.|+.++|+.++...+|.+++|.+.+ +... + +..++++.+++.++..++. +++
T Consensus 426 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~----~-----~~~~~~~~~~~~~~~~~~~-~~l 494 (505)
T TIGR00898 426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK----W-----LFLPLVLFGGLALLAGILT-LFL 494 (505)
T ss_pred HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH----H-----HhhHHHHHHHHHHHHHHHH-HcC
Confidence 4 777889999999999999999999999999999999998 4321 1 1236777776655555544 466
Q ss_pred cCCch
Q 047440 432 KEPSR 436 (619)
Q Consensus 432 pe~~~ 436 (619)
||+..
T Consensus 495 pet~~ 499 (505)
T TIGR00898 495 PETKG 499 (505)
T ss_pred cCCCC
Confidence 87654
No 190
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.87 E-value=4.5e-08 Score=101.32 Aligned_cols=180 Identities=23% Similarity=0.315 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhC-CccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLG-AAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
+.+.++..++............+.+.++.| .+....|.+.++..++-++.-...+++..|+|.+++++++.+.. +=..
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~ 288 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL 288 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444555566666677777888888999998 67778888888888888899999999999999999998887765 5555
Q ss_pred HHHHhhccCcHHHH----HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHH-HHHHHhHHHHHHhhhhhcccc
Q 047440 328 MYALAYDFSSIAVL----LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVS-ASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 328 l~~~~~~~~~~~~l----~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+++... ++.+.. ++...+.|+..|. .++..|+.+.+|++.|+++.+++.+ ..++|.++|..++|++.+.++
T Consensus 289 l~a~~~--~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 289 LYAYFS--DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHhc--CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 555541 233333 3334568998887 8999999999999999999998765 578999999999999977664
Q ss_pred ccc-eeccccchhHHHHHHHHHHHHHHHhhhccCC
Q 047440 401 IYK-LTFNQNTLPGWIMAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 401 ~~~-w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 434 (619)
..+ ++| ...+.+.+++.++..++.+++.+|+
T Consensus 367 ~~~~~~~---~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 367 ARGMFDW---SAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred chhhhhH---HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 211 223 3355566666666666666666664
No 191
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.87 E-value=1.8e-08 Score=108.43 Aligned_cols=143 Identities=19% Similarity=0.156 Sum_probs=112.0
Q ss_pred HHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
+..++..+........+|.+.++ +|.++.+.|++.....++..++.++.|++.||+|||+++..+.++. ++.++..+.
T Consensus 262 ~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~ 341 (485)
T TIGR00711 262 VYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT 341 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc
Confidence 33334444444445567878776 7999999999999999999999999999999999999887777654 555555422
Q ss_pred -hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 333 -YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 333 -~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
.+..+++.+++..++.|+|.+. +.....+.+..|+++|+.+.|+.+....+|..+|+.+.+.+.+
T Consensus 342 ~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 342 FTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224567777778889998877 5556666778899999999999999999999999999998854
No 192
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.87 E-value=4.5e-08 Score=105.07 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=108.0
Q ss_pred ChHHH-HHHhCCccchhhHHHh-hHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHH-HhhccCcHHHHHHHH
Q 047440 270 TADDY-SMSLGAAATVCGIVIG-AMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL-FIGNVMYA-LAYDFSSIAVLLIGR 345 (619)
Q Consensus 270 ~~~~~-~~~~g~s~~~~g~~~s-~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~-~i~~~l~~-~~~~~~~~~~l~~~r 345 (619)
..+.+ .+++|.+..+.|++.+ ...++.+++.+++|+++||+|+|+.+..+.+. .++.+++. .+...++.+.+.+.-
T Consensus 244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33444 4568999999999974 55689999999999999999988866544433 23332222 111114555555555
Q ss_pred HHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHH
Q 047440 346 LFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFY 423 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~ 423 (619)
++..++.|. +...++..+..+++.+++.+|+.+...++|.++++.++|++.+.+ || ...|.+.++++++.
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~---G~-----~~~f~~~~~~~l~~ 395 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH---GW-----PTFYLFSVAAAVPG 395 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Ch-----HHHHHHHHHHHHHH
Confidence 565544443 566788888999999999999999999999998988999998765 33 33677777776665
Q ss_pred HHHHhhhccC
Q 047440 424 LVWLCISFKE 433 (619)
Q Consensus 424 ~~~~~~~~pe 433 (619)
.++..+ +++
T Consensus 396 l~~~~~-~~~ 404 (491)
T PRK11010 396 LLLLLV-CRQ 404 (491)
T ss_pred HHHHHH-HHh
Confidence 555544 344
No 193
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.86 E-value=9.4e-08 Score=100.43 Aligned_cols=273 Identities=15% Similarity=0.112 Sum_probs=161.3
Q ss_pred cChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcccc---C--chhHHHHHHHHH-HHHHHHHHhhc-cCcHHHH
Q 047440 269 PTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS---Y--FKPLVFSSIVLF-IGNVMYALAYD-FSSIAVL 341 (619)
Q Consensus 269 ~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~---G--rr~~~~~~~~~~-i~~~l~~~~~~-~~~~~~l 341 (619)
+..|.+.+++|+++++...+.++..+... .-+++|.++|-+ | ||+.++++.++. ++.+.++..+. ..+....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 34455677899999999999888888765 568899999984 3 555555555443 44444444311 1355666
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccC--ccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHH
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCV--PLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMA 417 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~--~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~ 417 (619)
.+.-++..+|.+. .++-+++.|.. .++.||...+....+..+|.++|..++|.+.+.. +.++ .|.+.+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---~~~~-----~f~i~~ 161 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---GPQG-----VFLISA 161 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---CCeE-----EehHHH
Confidence 6666777777777 78888888876 2334888899999999999999999999997765 3444 677777
Q ss_pred HHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCc
Q 047440 418 VAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPAN 497 (619)
Q Consensus 418 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (619)
++..+..+..++..+|.+.....+. .. . ..+.........+.
T Consensus 162 ~~~~l~~~~~~~~~~e~~~~~~~~~--------------------~~-----------------~-~~~~~~~~~~~~~~ 203 (433)
T PF03092_consen 162 ALPLLMLIVALFLLEERKVRPADEV--------------------FS-----------------F-GKEEVPCLFGSFRE 203 (433)
T ss_pred HHHHHHHHHHHHhhhhccccccchh--------------------hc-----------------c-cccccchhhHHHHH
Confidence 7777776666666666221111000 00 0 00000000000233
Q ss_pred chHHHHHhcC-cchHHHHH-HHHHHHHHHHHHhhchhhhhhhccc---ccchhHHHHHHHhhhhHHHHHHHHHHhhhhcc
Q 047440 498 SIRSAYRLLT-PSVKVQLL-IYFMLKYVMEILLSESSVVTTYYFG---WSTGAVAIFLACLGLTVLPVNIIVGSYISNMF 572 (619)
Q Consensus 498 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~ 572 (619)
..+++++.+. +.++...+ ..++..+.........-.+..+..+ +++...|.+..+.+++.+++..+.. ....+.
T Consensus 204 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~-~~~~~~ 282 (433)
T PF03092_consen 204 QLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYR-KYFSNW 282 (433)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 4555555553 44444444 2222221111111101122233345 7888888888777777777777766 455556
Q ss_pred chHHHHHHHHHHHHHHH
Q 047440 573 EDRQILLASEIMVCIGI 589 (619)
Q Consensus 573 g~r~~l~~~~~~~~i~~ 589 (619)
.-|+++.+..++.++..
T Consensus 283 ~~R~~~~~t~~~~~~~~ 299 (433)
T PF03092_consen 283 SWRRIFVVTTLVSVLAS 299 (433)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 66777666665555443
No 194
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.85 E-value=2.3e-08 Score=119.26 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=108.3
Q ss_pred HHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHH
Q 047440 254 LANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-LFIGNVMYAL 331 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~~i~~~l~~~ 331 (619)
.++.++..+..+.+...+|.+..+ +|.++...|++.+++.+|.++++++.|+++++.++++.+..+.+ ..++.+.+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (1140)
T PRK06814 231 ILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAF 310 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHh
Confidence 333333333344455567888776 79999999999999999999999999999988776664433333 2233322222
Q ss_pred h-----------------hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHh
Q 047440 332 A-----------------YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALA 392 (619)
Q Consensus 332 ~-----------------~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~ 392 (619)
. ....+.|.++++.++.|++.+. +...+++.+.+|++.||+++|..+++..+|..+|++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~ 390 (1140)
T PRK06814 311 ASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIIL 390 (1140)
T ss_pred cccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHH
Confidence 1 0115667788888889998887 67889999999999999999999999999999999999
Q ss_pred hhhhc
Q 047440 393 GLLQT 397 (619)
Q Consensus 393 ~~l~~ 397 (619)
+.+..
T Consensus 391 g~l~~ 395 (1140)
T PRK06814 391 ALLQA 395 (1140)
T ss_pred HHHHH
Confidence 98853
No 195
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.84 E-value=5.1e-08 Score=101.63 Aligned_cols=162 Identities=6% Similarity=-0.104 Sum_probs=102.0
Q ss_pred hHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhcc---CcHH
Q 047440 264 TYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDF---SSIA 339 (619)
Q Consensus 264 ~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~---~~~~ 339 (619)
+......+|.+.++ ..+.........+..+...++.|++|+++||+|++++++.+.+.. ++........+. .+++
T Consensus 268 fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~ 346 (462)
T PRK15034 268 FIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFI 346 (462)
T ss_pred HHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 33344455666655 223333333344556778889999999999999999887776544 444332222211 3456
Q ss_pred HHHHHHHHhhccCcc--hhhhhhhhccCcc---------------------chhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 340 VLLIGRLFCGFGSAR--AVNRRYISDCVPL---------------------KIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 340 ~l~~~r~l~G~~~~~--~~~~~~i~~~~~~---------------------~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
.+.++.++..++.|. .....++...+|. ++-|.+.|+.++..++|..+-|.+-|...
T Consensus 347 ~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~ 426 (462)
T PRK15034 347 AFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSL 426 (462)
T ss_pred HHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHH
Confidence 555554443333333 4566667776663 25678889999999999989897777775
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhccC
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKE 433 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe 433 (619)
+..+ + +...|+...+..+++.++.++..-.
T Consensus 427 ~~~g--~-----~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 427 NMTG--S-----PVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHcC--C-----cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5444 2 3447788888777777777765443
No 196
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.83 E-value=7.8e-08 Score=96.56 Aligned_cols=148 Identities=15% Similarity=0.036 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHH---hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMS---LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
.+.+.+..+..|+...........++.|..+ +|.++.+.++..+.+..+..+|.++.++++||+|+++++..+.++.
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~ 218 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLA 218 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3344455555555554555666677888864 5899999999999999999999999999999999988876666554
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
++.++.... ++.+. ..+-++.|++.+. |...+...+..|++ .+.+.++. .+..+|.+++|++.|.+.+..+
T Consensus 219 ~~~~~l~~~~---~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g 292 (310)
T TIGR01272 219 VLLSIGAALT---HGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG 292 (310)
T ss_pred HHHHHHHHHc---CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc
Confidence 554444443 33332 2345577888777 88788888877653 45566665 5667899999999999987653
No 197
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.80 E-value=1.2e-07 Score=90.18 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IG 325 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~ 325 (619)
|..+..........+ ..+.+...-|.+.+.+|+|.++...+.++..+|..+ +++.|.+.|++|.+.+++++.+.. +|
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 444333333333322 455666777888889999999999999999999886 588999999999999887777654 77
Q ss_pred HHHHHHhhc----cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 326 NVMYALAYD----FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 326 ~~l~~~~~~----~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
..+...+.. ..++|.+.+..++.|.+.+. +++.....+.+| ++||.+.|+.-...+++..+-..+...+
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 777776632 25778888888888887665 555566667787 5899999999888888887766665555
No 198
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.78 E-value=5.1e-08 Score=104.39 Aligned_cols=149 Identities=10% Similarity=0.014 Sum_probs=92.6
Q ss_pred hccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCch-----hHH--HHHHHHH-HHHHHHHHhhccCc
Q 047440 267 IVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFK-----PLV--FSSIVLF-IGNVMYALAYDFSS 337 (619)
Q Consensus 267 ~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr-----~~~--~~~~~~~-i~~~l~~~~~~~~~ 337 (619)
....+|.+.. ++|.+....+++.+++.++..++.+++|+++||+||| +.. ....++. ++.++.... .+
T Consensus 271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~---~~ 347 (476)
T PLN00028 271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA---NS 347 (476)
T ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc---ch
Confidence 3445666654 5799999999999999999999999999999999865 222 2222222 222333333 55
Q ss_pred HHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHH
Q 047440 338 IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWI 415 (619)
Q Consensus 338 ~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~ 415 (619)
.+..++.-++.|++.+. +...+++.+.. ++.+|.+.|+.+.+..+|..++|.+.+ .... .+|.+ .|++
T Consensus 348 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~--~~y~~-----~f~~ 417 (476)
T PLN00028 348 LGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF--TGSS--YSTET-----GISL 417 (476)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH--hcCC--ccHhh-----HHHH
Confidence 55555555555555433 44555566654 468999999887766666666655433 1111 13433 7777
Q ss_pred HHHHHHHHHHHHh
Q 047440 416 MAVAWLFYLVWLC 428 (619)
Q Consensus 416 ~~~~~~~~~~~~~ 428 (619)
.+++.+++.++.+
T Consensus 418 ~~~~~~i~~~~~~ 430 (476)
T PLN00028 418 MGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHHH
Confidence 7776655554443
No 199
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.77 E-value=2e-07 Score=97.25 Aligned_cols=123 Identities=12% Similarity=-0.008 Sum_probs=98.5
Q ss_pred ChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 047440 270 TADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFC 348 (619)
Q Consensus 270 ~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~ 348 (619)
.+|.+.+ .+|.++.+.|++.+...++.++++++.|++.||.++++++..+++..+..++..+. ++++.+.+..++.
T Consensus 227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~ 303 (393)
T PRK11195 227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQ---HSLLPAYPLLILI 303 (393)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 3444554 47999999999999999999999999999999999888777665444444444555 6777777778888
Q ss_pred hccCcc--hhhhhhhhccCccch-hhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 349 GFGSAR--AVNRRYISDCVPLKI-RMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 349 G~~~~~--~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
|++.+. +...+.+.+..|++. +|++.++.+....+|..++..+.+.+
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 998777 566677777766654 79999999999999999999999876
No 200
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.75 E-value=5.8e-08 Score=100.57 Aligned_cols=152 Identities=14% Similarity=0.020 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccC-chhHHH-HHH-HHH-HH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY-FKPLVF-SSI-VLF-IG 325 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G-rr~~~~-~~~-~~~-i~ 325 (619)
+...+..++............|.+.. .+|.+..+.+++.+.+.++.+++.++.|+++||.+ +|+..+ ... ... ++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 298 (379)
T TIGR00881 219 WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVS 298 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 33334444444444455556677765 47999999999999999999999999999999853 333222 221 122 22
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccc
Q 047440 326 NVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYK 403 (619)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~ 403 (619)
..+.... ...+.+.+++..++.|+.... +....++.|.+|++.|+++.|+.+....+|..+||.+.|.+.+.. +
T Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g 374 (379)
T TIGR00881 299 LLVYWLN-PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF---G 374 (379)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh---c
Confidence 2222221 114455566666777765443 556678899999999999999999999999999999999998765 5
Q ss_pred eec
Q 047440 404 LTF 406 (619)
Q Consensus 404 w~w 406 (619)
|++
T Consensus 375 ~~~ 377 (379)
T TIGR00881 375 WAG 377 (379)
T ss_pred ccc
Confidence 554
No 201
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.75 E-value=2.2e-07 Score=95.67 Aligned_cols=165 Identities=10% Similarity=-0.051 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCc---hhHHHH-HHHHH-HH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYF---KPLVFS-SIVLF-IG 325 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Gr---r~~~~~-~~~~~-i~ 325 (619)
+...+..++.....+.+...+|.+.++.|.+.. .+...++..++..++ .++++||.+| |+.... ..+.. ++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 444444455555555666788999998887754 566655555555544 4677777654 333222 22222 33
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccc
Q 047440 326 NVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYK 403 (619)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~ 403 (619)
..+.++. .+.+..++.-++.|++... +...++.+|.+|++.|++++|+.+....+|.+++|++.+.+..+.
T Consensus 271 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~---- 343 (368)
T TIGR00903 271 FLALAFE---LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSA---- 343 (368)
T ss_pred HHHHHHc---cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCH----
Confidence 3333433 4444445555566665544 667789999999999999999999999999999999988775321
Q ss_pred eeccccchhHHHHHHHHHHHHHHHhhhccC
Q 047440 404 LTFNQNTLPGWIMAVAWLFYLVWLCISFKE 433 (619)
Q Consensus 404 w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe 433 (619)
...|.+.++..++..+..+ .+++
T Consensus 344 ------~~~f~~~~~~~~i~~~~~~-~~~~ 366 (368)
T TIGR00903 344 ------EAYFTFLAILITIAFAIAL-LLPN 366 (368)
T ss_pred ------HHHHHHHHHHHHHHHHHHH-hCCC
Confidence 2356666666566555543 3344
No 202
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.73 E-value=1.4e-07 Score=94.18 Aligned_cols=170 Identities=16% Similarity=0.075 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IG 325 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~ 325 (619)
+.+.+..+.+|-.. -.+...+|.+.+ ++|.++.+.|.+.+.+.+...+..+.+|+++||+|.++++....+.. ++
T Consensus 221 W~lsllY~~tFG~F---vgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 221 WLLSLLYFATFGGF---VGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 34444444444443 444455666766 59999999999999999999999999999999999888876666544 55
Q ss_pred HHHHHHhhcc----CcHHH----HHHHHHHhhccCcchhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 326 NVMYALAYDF----SSIAV----LLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 326 ~~l~~~~~~~----~~~~~----l~~~r~l~G~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
..+..+..+. .+.+. ++...++.|+|.| .+..++..++|. +-|.+.|+.++..++|...-|..-+...+
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG--svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG--SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcc--hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 5555544210 22333 4444555566555 456666666654 78899999999999999888888888866
Q ss_pred cccccceeccccchhHHHHHHHHHHHHHHHhhh
Q 047440 398 NFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCIS 430 (619)
Q Consensus 398 ~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~ 430 (619)
..+ .+...|++...+.+++.++.+..
T Consensus 375 ~tg-------~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 375 LTG-------SYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred hcc-------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 13457787777777776665544
No 203
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.72 E-value=1e-07 Score=98.09 Aligned_cols=128 Identities=9% Similarity=0.029 Sum_probs=96.5
Q ss_pred HHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHH-HHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMA-IAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~-~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
+..++............|.+..++|.+..+.|.+.++.. ++.+++.+++|+++||+|||+.++.+.++. ++..+..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~ 295 (356)
T TIGR00901 216 LLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWL 295 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556667778888889999999998888766 577899999999999999988776665544 444433332
Q ss_pred -hcc-------CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHH
Q 047440 333 -YDF-------SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASA 382 (619)
Q Consensus 333 -~~~-------~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 382 (619)
... ++.+.++++.++.|++.+. +...+++.+.+|+++||+.+|+.+...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 296 ASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 111 3457777888888998887 8999999999999999999999877654
No 204
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.71 E-value=2.2e-07 Score=99.43 Aligned_cols=176 Identities=14% Similarity=0.019 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhH--------HH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPL--------VF 317 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~--------~~ 317 (619)
++.++...+..+......+.....+|.+..+ +|.+..+.|++.++..++..++.++.|+++||+++|+. +.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIF 339 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3445555566666666666666778888765 89999999999999999999999999999998764421 11
Q ss_pred HHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhh
Q 047440 318 SSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGL 394 (619)
Q Consensus 318 ~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~ 394 (619)
.+.... .+..++.......+.+..+++-++.|.+.+. +.......+..|. .+|.++|+.+....+|..++|.+.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~ 418 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGN 418 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 111111 1111111111113444444444455554443 3333445566654 89999999999999999999999998
Q ss_pred hhccccccceeccccchhHHHHHHHHHHHHHHHh
Q 047440 395 LQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLC 428 (619)
Q Consensus 395 l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+.+..+..+| ...|++.+++.++..++..
T Consensus 419 ~~~~~~~~~~-----~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 419 ILSQDSKNVW-----LIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred eeCCCCchHH-----HHHHHHHHHHHHHHHHHee
Confidence 8653210123 3377777766666555444
No 205
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.71 E-value=6.9e-06 Score=84.88 Aligned_cols=302 Identities=13% Similarity=0.074 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCC-ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-----
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGA-AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF----- 323 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~----- 323 (619)
...++...++...+.-+.....|.++.+..- +-.-.+...-+-.+..+++++..|.+.||..|.+++-.+++.-
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHH
Confidence 3556677777777777788888888887632 3333444444456677888999999999999999876665431
Q ss_pred HHHHHHH--HhhccC---cHHH---HHHHHHHhhccCcc-hhhhhh--hhcc----C--ccchhhhHhHHHHHHHHHHhH
Q 047440 324 IGNVMYA--LAYDFS---SIAV---LLIGRLFCGFGSAR-AVNRRY--ISDC----V--PLKIRMQASAGFVSASALGMA 386 (619)
Q Consensus 324 i~~~l~~--~~~~~~---~~~~---l~~~r~l~G~~~~~-~~~~~~--i~~~----~--~~~~r~~~~~~~~~~~~~G~~ 386 (619)
+++.+.. +..... +-+. +++.-.+.|.-.-. ..+... =-|| . ++..+.+.++...-.=-+.-+
T Consensus 84 ~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckl 163 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKL 163 (432)
T ss_pred HHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 2222222 111111 1222 22222222222111 222211 1233 2 355566777777777778899
Q ss_pred HHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccC----CchhhhhhccccccCCCCCcchhhhhcCC
Q 047440 387 CGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKE----PSRDIEENHTQEESNAEPVDNSALEKGLQ 462 (619)
Q Consensus 387 ~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (619)
+||++.|.+....+ +.....+.++..++..++-++++.. .|.-..++
T Consensus 164 laPl~vG~l~t~~s--------~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~--------------------- 214 (432)
T PF06963_consen 164 LAPLFVGLLMTFAS--------PVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKK--------------------- 214 (432)
T ss_pred HHHHHHHHHhhccC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCC---------------------
Confidence 99999999966443 2224445555555555544444332 22111110
Q ss_pred CCcccCCCCCCCCcCCCCC-CCCCCCCCCCCCCCCcchHHH---HH-hcCcchHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 047440 463 QPLLITSEEKPEDEDGDQE-YDGSDETSEESHPPANSIRSA---YR-LLTPSVKVQLLIYFMLKYVMEILLSESSVVTTY 537 (619)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (619)
.....+.....+ ..+..............++.. |+ .++.+++...+...+.++...++......|+..
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~ 287 (432)
T PF06963_consen 215 -------RSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKS 287 (432)
T ss_pred -------CCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 000000000000 000000000000001111111 11 124566666666667777666777777888888
Q ss_pred cccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 047440 538 YFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGI 589 (619)
Q Consensus 538 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~ 589 (619)
. |+++...|.+-+...+.++.+.++.. ++.+|+|..+.-+++.....+++
T Consensus 288 ~-G~s~~~igi~R~~gav~Gl~gT~~~p-~l~~riGlvr~G~~~l~~q~~~L 337 (432)
T PF06963_consen 288 Q-GYSPSVIGIFRGLGAVFGLLGTWVYP-WLMKRIGLVRAGLWSLWWQWVCL 337 (432)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchhhHHHHHHHHHHHH
Confidence 8 99999999999999999998888888 99999999888777766554443
No 206
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.69 E-value=4e-07 Score=90.91 Aligned_cols=156 Identities=25% Similarity=0.353 Sum_probs=120.3
Q ss_pred HHHHhhhHhhccChHHHHHHhCCcc--chhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhc
Q 047440 258 FLYMVNTYIIVPTADDYSMSLGAAA--TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYD 334 (619)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~ 334 (619)
+....+.....+..+.+..+++.+. ...+++.+.+.++..++.++.|.++||+|||+.++.+.... ++.+++++...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN 91 (338)
T ss_pred HHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc
Confidence 3333566667777888888887776 58899999999999999999999999999998777776543 55566666611
Q ss_pred cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCcc-chhhhHhHHHHH-HHHHHhHHHHHHhhhhhccccccceeccccc
Q 047440 335 FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPL-KIRMQASAGFVS-ASALGMACGPALAGLLQTNFKIYKLTFNQNT 410 (619)
Q Consensus 335 ~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~ 410 (619)
.+.+.+++.|++.|++.+. +...++++++.|. ++|+...+.... ...+|.+++|.+++.+... ...+|++
T Consensus 92 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 165 (338)
T COG0477 92 -VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRA---- 165 (338)
T ss_pred -chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH----
Confidence 2489999999999999886 8899999999988 678999998888 6888999999888888544 3234555
Q ss_pred hhHHHHHHHH
Q 047440 411 LPGWIMAVAW 420 (619)
Q Consensus 411 ~~~~~~~~~~ 420 (619)
.+.+.....
T Consensus 166 -~~~~~~~~~ 174 (338)
T COG0477 166 -AFLLAALLG 174 (338)
T ss_pred -HHHHHHHHH
Confidence 455544443
No 207
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.68 E-value=5.8e-07 Score=93.50 Aligned_cols=129 Identities=21% Similarity=0.335 Sum_probs=91.5
Q ss_pred hhccChHHHHH-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhh--ccCcHHHH
Q 047440 266 IIVPTADDYSM-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAY--DFSSIAVL 341 (619)
Q Consensus 266 ~~~~~~~~~~~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~--~~~~~~~l 341 (619)
......|.+.. ++|.++.+.|++.+...++..++.++.|++.||+|+|+.+..+.+.. ++.+++.+.. ...+.+.+
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMI 303 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 34444566655 68999999999999999999999999999999999998876665443 4444443321 11234455
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHH-HHhHHHHHHhhhhh
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASA-LGMACGPALAGLLQ 396 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~g~~i~~~l~ 396 (619)
++..++.|++.+. +....+..|..| ++++++.++.+.... +|.+.+|.++ .+.
T Consensus 304 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~ 359 (385)
T TIGR00710 304 IGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIH 359 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 5666778887776 677777788776 679999998876654 4666666655 443
No 208
>PRK09848 glucuronide transporter; Provisional
Probab=98.68 E-value=1.8e-07 Score=99.63 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVM 328 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l 328 (619)
....++.++............|.+.++ +|.++...++......++.+++.+++++++||+|+|+++..+.++. ++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~ 310 (448)
T PRK09848 231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLL 310 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 333333444444444444445555554 6766655555555556778889999999999999999888777654 66655
Q ss_pred HHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccc-------hhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 329 YALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLK-------IRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 329 ~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
..+. +..+++.+++..++.|+|.+. +...++++|..|.+ ++|..+|..+.+..+|..+|+.+.+.+..
T Consensus 311 ~~~~-~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 311 FFWV-SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553 114677777778888988777 77788888888654 45899999999999999999999988743
No 209
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.67 E-value=6.9e-07 Score=87.30 Aligned_cols=172 Identities=21% Similarity=0.188 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH-HHHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~~-i~~~ 327 (619)
.+.+.+-.-+..+.++.....+|.+..|-|+|+.+.|++.+...+.++.+++....+++| -.+|+..+...++. +|.+
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~ 289 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV 289 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 333334444556677888899999999999999999999999999999999999999997 45666665555544 6666
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCcc-chhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccce
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPL-KIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKL 404 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w 404 (619)
.+.+.+. ++++.. -++.|+|.|. +.+..++.+..+. ++-+...|+.+....+=..+||.+.|++.+..+ +|
T Consensus 290 G~~~~P~-~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw 363 (395)
T COG2807 290 GLLLAPG-QLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SW 363 (395)
T ss_pred HHHHhhh-hHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--Ch
Confidence 6666521 222222 3889999777 8888888887754 444555566677767777899999999988887 55
Q ss_pred eccccchhHHHHHHHHHHHHHHHhhhcc
Q 047440 405 TFNQNTLPGWIMAVAWLFYLVWLCISFK 432 (619)
Q Consensus 405 ~w~~~~~~~~~~~~~~~~~~~~~~~~~p 432 (619)
.- +.+..+...++..+..+..-|
T Consensus 364 ~~-----~~~~l~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 364 SA-----PLVLLALATLLMLIFGLRAGR 386 (395)
T ss_pred HH-----HHHHHHHHHHHHHHHHhhcch
Confidence 44 555555555555555554433
No 210
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.67 E-value=3.5e-07 Score=96.75 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IG 325 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~ 325 (619)
+.+...++..++..++..+.....+.+.++ +|.+ ...+.+..+..++.+++.+++++++||+|+|+++..+.+.. ++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 303 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG 303 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence 344455556666666677777777777776 4544 67888889999999999999999999999999988887765 66
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCcc-------chhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 326 NVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPL-------KIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 326 ~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
.++..+... ++.+.+++.-++.|++.+. +...++++|..+. ++.|..+|..+....+|..+++.+.+.+.
T Consensus 304 ~~~~~~~~~-~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 304 FLLLFFLGP-GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred HHHHHHHHh-hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 666666621 4889999999999999888 7888999998863 34588899999999999999999888874
Q ss_pred c
Q 047440 397 T 397 (619)
Q Consensus 397 ~ 397 (619)
.
T Consensus 383 ~ 383 (428)
T PF13347_consen 383 A 383 (428)
T ss_pred H
Confidence 3
No 211
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.67 E-value=8e-08 Score=98.53 Aligned_cols=134 Identities=24% Similarity=0.262 Sum_probs=103.6
Q ss_pred HHHHHHhhhHhhccChHHH-HHHhCCc-cchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 256 NTFLYMVNTYIIVPTADDY-SMSLGAA-ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~-~~~~g~s-~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
..++..+........+|.+ .+.+|.+ ..+.+++.++..++..++.++.|+++||+|+++.+....... ++.+...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (352)
T PF07690_consen 214 AFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLL 293 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCS
T ss_pred hhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455566777777 6678999 789999999999999999999999999999877655444333 333333332
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHH
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGP 389 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 389 (619)
...++.+..++.-++.|++.+. +...+++.+.+|+++||++.|+.+...++|..+||
T Consensus 294 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 294 PFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 1115667777788888998776 88999999999999999999999999999999988
No 212
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.64 E-value=1e-06 Score=91.53 Aligned_cols=130 Identities=13% Similarity=0.003 Sum_probs=85.2
Q ss_pred hHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H-HHHHHHHhhccCcHHH
Q 047440 264 TYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I-GNVMYALAYDFSSIAV 340 (619)
Q Consensus 264 ~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i-~~~l~~~~~~~~~~~~ 340 (619)
........|.+. +.+|.++.+.|++.++..++..++.++.|++.||+|||+++..+.+.. + +..+........+++.
T Consensus 210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (377)
T PRK11102 210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWA 289 (377)
T ss_pred HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333344445444 458999999999999999999999999999999999999887766532 2 2222222111134555
Q ss_pred HHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHH-HHHHHhHHHHHHhhh
Q 047440 341 LLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVS-ASALGMACGPALAGL 394 (619)
Q Consensus 341 l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~g~~i~~~ 394 (619)
+.++-++.+.+.+. +....++.|..| +.++.+.+.... ..++|..+|+++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 290 LVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55544444443333 445566777666 789999988654 355677777766543
No 213
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.63 E-value=7.3e-07 Score=90.89 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=125.6
Q ss_pred hHHHHHHh----CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHHhhccCcHHHHHHHH
Q 047440 271 ADDYSMSL----GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-LFIGNVMYALAYDFSSIAVLLIGR 345 (619)
Q Consensus 271 ~~~~~~~~----g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~~i~~~l~~~~~~~~~~~~l~~~r 345 (619)
.|.|...+ +.+....|.+.++..+.-++...+..++.+|+|.|+.++++.+ .++=.++++++ ++.+.+.+.+
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---~~~~~i~~~k 319 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---TNPWVISLIK 319 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----SHHHHHHHH
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---cchHHHHHHH
Confidence 45565554 3345678999999999999999999999999999997765554 45888888999 9999999999
Q ss_pred HHhhccCcc--hhhhhhhhccCccchhhhHhHH-HHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHH
Q 047440 346 LFCGFGSAR--AVNRRYISDCVPLKIRMQASAG-FVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~ 422 (619)
.+.|+-.+. .....|+++.+|++..++...+ .+.+.++|.++.+.++|.+.++.| ++.+|++.+.+.++
T Consensus 320 lLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G--------~~~tylimg~iv~~ 391 (412)
T PF01306_consen 320 LLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG--------FQHTYLIMGLIVLP 391 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC--------cHHHHHHHHHHHHH
Confidence 999999887 8889999999999888888777 478899999999999999988776 56688899988888
Q ss_pred HHHHHhhhccCCchh
Q 047440 423 YLVWLCISFKEPSRD 437 (619)
Q Consensus 423 ~~~~~~~~~pe~~~~ 437 (619)
..++..+.++++.+.
T Consensus 392 ~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 392 FTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHS--SSST
T ss_pred HHHHheeeecCCCcc
Confidence 888888888776553
No 214
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.63 E-value=5.7e-07 Score=94.28 Aligned_cols=142 Identities=17% Similarity=0.073 Sum_probs=93.4
Q ss_pred HHHHHHhCCccchhhHHHhhHH-HHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH---HHhhccCcHHHHHHHHH
Q 047440 272 DDYSMSLGAAATVCGIVIGAMA-IAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMY---ALAYDFSSIAVLLIGRL 346 (619)
Q Consensus 272 ~~~~~~~g~s~~~~g~~~s~~~-~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~---~~~~~~~~~~~l~~~r~ 346 (619)
+.+.+++|.++.++|++.+... ++.+++.+++|++.||+|+|+.+..+.+.. +..+.+ ++. .++.+.++++-+
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~ 311 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--PKHLWTMALAIG 311 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHH
Confidence 3455668999999999987654 568899999999999999988775555433 333322 232 145565555544
Q ss_pred H----hhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHH
Q 047440 347 F----CGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAW 420 (619)
Q Consensus 347 l----~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~ 420 (619)
+ .|++.+. +....++.+.+|.+.+ +......++|.++++.++|++.+.+ ||++ .|.+.++++
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~---G~~~-----~f~~~~~~~ 379 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAY---GWPG-----FYLMTVVIA 379 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh---ChHH-----HHHHHHHHH
Confidence 3 4444444 5666777777775554 4555556677776677899998776 4544 677777666
Q ss_pred HHHHHHH
Q 047440 421 LFYLVWL 427 (619)
Q Consensus 421 ~~~~~~~ 427 (619)
++..++.
T Consensus 380 ~~~~~~~ 386 (402)
T PRK11902 380 LPGLALL 386 (402)
T ss_pred HHHHHHH
Confidence 5554444
No 215
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.62 E-value=1e-06 Score=92.11 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=78.6
Q ss_pred hHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHh
Q 047440 271 ADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFC 348 (619)
Q Consensus 271 ~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~ 348 (619)
.|.+. +++|.++.+.|.+.+...++..++.++.|++.||+|||+++..+.+.. ++.++..+. .+.+..++.-++.
T Consensus 226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 302 (392)
T PRK10473 226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS---PSHAVSLFGITLI 302 (392)
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34444 468999999999999999999999999999999999999887777654 666665555 4444334433443
Q ss_pred hccCcchhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 349 GFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 349 G~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
++|.+.........+..|.++|+ |......+++..+|+.+++++....
T Consensus 303 ~~g~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~ 350 (392)
T PRK10473 303 CAGFSVGFGVAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL 350 (392)
T ss_pred HHHHHHHhHHHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43333311112233344544443 3344445566667777777775544
No 216
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.61 E-value=2.6e-05 Score=81.67 Aligned_cols=145 Identities=12% Similarity=0.091 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHHhCC-----ccchhhHHHhhHHHHHHHH-hhhhhhhccccCchhHHHHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMSLGA-----AATVCGIVIGAMAIAQVFS-SVYFSAWSNRSYFKPLVFSSIV 321 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~s~~~~~~~i~-~~~~G~l~Dr~Grr~~~~~~~~ 321 (619)
+.++...+..|+..+++++.-+. .+.+.+ +...+.++-+...+...+. .++.+++++|++|++++.....
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR~l----KD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~ 82 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILRDT----KDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS 82 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence 34455555556666666655543 444444 4467888888887777766 8999999999999998755544
Q ss_pred HH-HHHHHHHHh-hccC---------------------------cHHHHHHHHHHhhccCcc--h-hhhhhhhccCccch
Q 047440 322 LF-IGNVMYALA-YDFS---------------------------SIAVLLIGRLFCGFGSAR--A-VNRRYISDCVPLKI 369 (619)
Q Consensus 322 ~~-i~~~l~~~~-~~~~---------------------------~~~~l~~~r~l~G~~~~~--~-~~~~~i~~~~~~~~ 369 (619)
.+ +..+++++. .+.. +.|..-+..+...+-+.. + ...++++|.++.++
T Consensus 83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q 162 (472)
T TIGR00769 83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE 162 (472)
T ss_pred HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 33 222332222 1101 122333333333443333 3 66789999999999
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 370 RMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 370 r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
-.+..++++.+.++|.++|+.+..++.
T Consensus 163 akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 163 AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988885
No 217
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.60 E-value=3e-07 Score=98.43 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=100.4
Q ss_pred HHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHH
Q 047440 253 NLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYAL 331 (619)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~ 331 (619)
.++..++............+.+.+....+....+++.++..++.+++.+++++++||+|+|+.+..+.++. ++.+...+
T Consensus 236 ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~ 315 (473)
T PRK10429 236 LLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLL 315 (473)
T ss_pred HHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33334433444444444444444443335566777878777899999999999999999999887766554 44443332
Q ss_pred h--hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCc-------cchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 332 A--YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVP-------LKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 332 ~--~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
. ....+.+.+++.-++.|++.+. +...++++|..+ .+..|..+|....+.-+|..+|+.+.|++.+
T Consensus 316 ~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 316 MGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1125667777777888888777 777888999865 3345668889999999999999999998854
No 218
>PRK10133 L-fucose transporter; Provisional
Probab=98.57 E-value=7.3e-07 Score=94.29 Aligned_cols=124 Identities=10% Similarity=-0.030 Sum_probs=93.6
Q ss_pred ChHHHH-H-HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHH
Q 047440 270 TADDYS-M-SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRL 346 (619)
Q Consensus 270 ~~~~~~-~-~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~ 346 (619)
.++.+. + .+|.++.+.|+..+.+.++..++.++.|++.||+|+|+++..+.++. ++.++..+. ++.+ .++.-+
T Consensus 280 ~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 355 (438)
T PRK10133 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---GGHV-GLIALT 355 (438)
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CChH-HHHHHH
Confidence 345553 4 47999999999999999999999999999999999999887776655 444444444 4432 244556
Q ss_pred HhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 347 FCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 347 l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
+.|++.+. |...+...+..|+ +-+.+.++..+ ..+|..++|.+.|.+.+..
T Consensus 356 l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~ 408 (438)
T PRK10133 356 LCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAA 408 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhc
Confidence 78888887 8888888888765 46677777764 4467888888888887654
No 219
>PRK09669 putative symporter YagG; Provisional
Probab=98.57 E-value=1e-06 Score=93.74 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=86.8
Q ss_pred cchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhh
Q 047440 282 ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNR 358 (619)
Q Consensus 282 ~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~ 358 (619)
+...+.+.+...++.+++.+++++++||+|+|+.+..+.+.. ++.+...+. +.++.+.+++..++.|++.+. +...
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~ 341 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-PPSNVWLIFALNILFNFIQNLTTPLQW 341 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777888899999999999999999887766544 333222222 225777788888889998887 7888
Q ss_pred hhhhccCcc-------chhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 359 RYISDCVPL-------KIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 359 ~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
++++|..+. +..|..+|....+..+|..+|+.++|++.+..
T Consensus 342 am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 342 SMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred HHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999988752 33466778888999999999999999885433
No 220
>PRK11043 putative transporter; Provisional
Probab=98.54 E-value=2.6e-06 Score=89.34 Aligned_cols=128 Identities=15% Similarity=0.022 Sum_probs=93.0
Q ss_pred ccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH---HHHHhhccCcHHHHHH
Q 047440 268 VPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV---MYALAYDFSSIAVLLI 343 (619)
Q Consensus 268 ~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~---l~~~~~~~~~~~~l~~ 343 (619)
....|.+.+++|.+..+.|+......++..++.++.+++.||+|+|+.+....+.. ++.+ +.... ..++.+.+++
T Consensus 223 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 301 (401)
T PRK11043 223 LTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL-SHPSLVPLLI 301 (401)
T ss_pred HHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcHHHHHH
Confidence 34567788889999999999888888999999999999999999988664443322 2222 22221 1145555666
Q ss_pred HHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 344 GRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 344 ~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
+..+.|++.+. +...+...+..| +++|+++|+++.....+..+++.+.+.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 66677777666 666666667665 579999999998888888888888888854
No 221
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.53 E-value=2.4e-06 Score=91.37 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHH-hCCcc----chhhHHHhhHHHHHHHHhhhhh----hhccc-cCchhHH--H
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAA----TVCGIVIGAMAIAQVFSSVYFS----AWSNR-SYFKPLV--F 317 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----~~~g~~~s~~~~~~~i~~~~~G----~l~Dr-~Grr~~~--~ 317 (619)
+..++++.++..+.+......++.+.++ .+.+. ...+++.++..+..++.+++.. ++.+| .+.+... .
T Consensus 274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~ 353 (475)
T TIGR00924 274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT 353 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 3444444445555555666666766655 33331 2267888888888888888755 45554 3333333 4
Q ss_pred HHHHHH-HHHHHHHHh------hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHH
Q 047440 318 SSIVLF-IGNVMYALA------YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACG 388 (619)
Q Consensus 318 ~~~~~~-i~~~l~~~~------~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g 388 (619)
+|+++. ++.+..+++ ....|+|++++..++.|+|... |...+++++..|++.||+++|++..+..+|..+|
T Consensus 354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~ 433 (475)
T TIGR00924 354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLG 433 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 555555431 0126899999999999999888 9999999999999999999999999999999999
Q ss_pred HHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhh
Q 047440 389 PALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCIS 430 (619)
Q Consensus 389 ~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~ 430 (619)
+.++....... +|.+ .|...+++.++..++.++.
T Consensus 434 ~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 434 GYLATFGAVPQ---GVTG-----VFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHHHHHhccc---chhh-----HHHHHHHHHHHHHHHHHHH
Confidence 88888764432 3333 4445555545444444443
No 222
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.1e-07 Score=91.63 Aligned_cols=166 Identities=18% Similarity=0.171 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccC--chhHHHHHHHHH-HHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY--FKPLVFSSIVLF-IGN 326 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G--rr~~~~~~~~~~-i~~ 326 (619)
.+.........++..+.-|.++.++.+ +..+..++|+..--..+.++++..+.|.++||++ |....+.+++.. +++
T Consensus 273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~ 352 (464)
T KOG3764|consen 273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSS 352 (464)
T ss_pred hhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 333344445556777888999996665 7766668999988899999999999999999999 544445555544 666
Q ss_pred HHHHHhhccCcHHHHHHHHHHhhccCcc--hhhh---hhhhccCccc---hhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 327 VMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNR---RYISDCVPLK---IRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~---~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
....++ +++..+++-++..|++.+. +... .++.|....+ .-|...++...++++|..+||.++|.+.+.
T Consensus 353 ~~iP~~---~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~ 429 (464)
T KOG3764|consen 353 GPIPFA---TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA 429 (464)
T ss_pred chhHhh---hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee
Confidence 666777 9999999999988888776 3333 3344433333 457888999999999999999999999887
Q ss_pred ccccceeccccchhHHHHHHHHHHHHHHH
Q 047440 399 FKIYKLTFNQNTLPGWIMAVAWLFYLVWL 427 (619)
Q Consensus 399 ~~~~~w~w~~~~~~~~~~~~~~~~~~~~~ 427 (619)
. |.+| ...+.++..++...++
T Consensus 430 i---GF~w-----l~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 430 I---GFEW-----LMTIIGILNLIYAPVL 450 (464)
T ss_pred h---hHHH-----HHHHHHHHHHHHHHHH
Confidence 6 5666 4445555544444433
No 223
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.48 E-value=3.4e-05 Score=84.63 Aligned_cols=149 Identities=10% Similarity=0.075 Sum_probs=108.3
Q ss_pred HHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH-HHHHHHHHhhcc-----CcHHHHHHHHHH
Q 047440 275 SMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVLF-IGNVMYALAYDF-----SSIAVLLIGRLF 347 (619)
Q Consensus 275 ~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~~-i~~~l~~~~~~~-----~~~~~l~~~r~l 347 (619)
...+|.+.+....+...+....-+.++++|+++|+ +|+++.++.+.++. +|.++.++.... ......+++-++
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL 94 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL 94 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH
Confidence 34589998888888888888889999999999998 89998776666554 777766654111 112345566677
Q ss_pred hhccCcc--hhhhhhhhccCccc---hhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc----ccceeccccchhHHHHHH
Q 047440 348 CGFGSAR--AVNRRYISDCVPLK---IRMQASAGFVSASALGMACGPALAGLLQTNFK----IYKLTFNQNTLPGWIMAV 418 (619)
Q Consensus 348 ~G~~~~~--~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~----~~~w~w~~~~~~~~~~~~ 418 (619)
.++|.|+ +...+..+|.++++ +|-..+.++..+.++|+.+++++.+++....+ ..+| ...|.+.++
T Consensus 95 ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~-----~~aF~i~~i 169 (654)
T TIGR00926 95 IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY-----PLAFGVPAI 169 (654)
T ss_pred HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch-----HHHHHHHHH
Confidence 7777777 89999999998754 46778888999999999999999998864331 1123 337777777
Q ss_pred HHHHHHHHHh
Q 047440 419 AWLFYLVWLC 428 (619)
Q Consensus 419 ~~~~~~~~~~ 428 (619)
+.++++++..
T Consensus 170 ~m~ia~lvf~ 179 (654)
T TIGR00926 170 LMILALIVFM 179 (654)
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 224
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.48 E-value=3.4e-06 Score=88.20 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=93.0
Q ss_pred ccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHH-HHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 268 VPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVF-SSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 268 ~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~-~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
....+.+.++ +|.++.+.|++.....++.++++++.+++.||+|++.... .+.+.. +........ ...+.+.++++
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 305 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWF-GVMNVWTLLVP 305 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHH
Confidence 3344556665 8999999999999999999999999999999998433222 111122 211111111 11456777778
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
.++.|++.+. +...+++.+.+| +++|.+.++.+....+|..+|+.+++.+..
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 306 AALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888888776 788888888886 578999999999999999999999998854
No 225
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.47 E-value=6.3e-07 Score=91.64 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=132.1
Q ss_pred HHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh
Q 047440 254 LANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~ 332 (619)
++..++.+.+.+.+...+-..+++++..+...|........|-++.-++.+++..++|+-+++..++.+. +=.+.+...
T Consensus 377 f~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L 456 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL 456 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence 3344444555666666677788899988888898888888888889999999999999999998888766 556666777
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHH-HHHHHHHhHHHHHHhhhhhccccccceecccc
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGF-VSASALGMACGPALAGLLQTNFKIYKLTFNQN 409 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~ 409 (619)
+|.|+.+..-+++|+..+. .++.+|++...||+.|..+.+++ ....++|-.+|.+|||.+...++ -
T Consensus 457 ---~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg--------~ 525 (618)
T KOG3762|consen 457 ---QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG--------A 525 (618)
T ss_pred ---cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh--------h
Confidence 9999999999999999988 89999999999999999999986 67789999999999999977664 3
Q ss_pred chhHHHHHHHHHHHHHHH
Q 047440 410 TLPGWIMAVAWLFYLVWL 427 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~ 427 (619)
+..|.+.++.+++.+++.
T Consensus 526 ~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 526 RTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556766666655554443
No 226
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.47 E-value=6.8e-07 Score=87.00 Aligned_cols=125 Identities=17% Similarity=0.207 Sum_probs=90.4
Q ss_pred HHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCc--HHHHHHHHHHhhccCcchhhhhhhhccCccch
Q 047440 293 AIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSS--IAVLLIGRLFCGFGSARAVNRRYISDCVPLKI 369 (619)
Q Consensus 293 ~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~i~~~~~~~~ 369 (619)
.+.-+-|.++.|++.||+|||+.+..+++.+ ++.++...+.. .+ ..+++.+|++...+ ..+.+.|..|++|.+-
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~-rn~~tvllf~arafisg~--fqvaYvYtPEVyPTav 467 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT-RNAYTVLLFTARAFISGA--FQVAYVYTPEVYPTAV 467 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHhch--heEEEEecCcccchhh
Confidence 4455678889999999999999998888766 66666665521 22 23455566554221 1678999999999999
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhh
Q 047440 370 RMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCIS 430 (619)
Q Consensus 370 r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~ 430 (619)
|+.+.|....+.-+|.++.|+++-....+. ..+..+.+.+.+++.+...++
T Consensus 468 RatgvGtcSsmaRIggI~~p~iA~~~e~s~----------sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 468 RATGVGTCSSMARIGGIFSPVIAMRAELST----------SLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred hhcchhhhhhHHhhhhhhhhHHHHHhccce----------eehHHHHHHHHHHHHHHheee
Confidence 999999999999999999999993322221 336667777766666666554
No 227
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.45 E-value=4.1e-06 Score=84.03 Aligned_cols=168 Identities=14% Similarity=0.036 Sum_probs=121.4
Q ss_pred HHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH-HHHHHHHHhhcc
Q 047440 259 LYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVLF-IGNVMYALAYDF 335 (619)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~~-i~~~l~~~~~~~ 335 (619)
+..+++.+.-+++.+|..+ ||++..+...+......|.+++....|++..| .+.++....+.... ++..+..++...
T Consensus 219 l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~ 298 (403)
T PF03209_consen 219 LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL 298 (403)
T ss_pred HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455555566666666 89999999999999999999999999998884 66666655555433 444444444334
Q ss_pred CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccc-c-eeccccch
Q 047440 336 SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIY-K-LTFNQNTL 411 (619)
Q Consensus 336 ~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~-~-w~w~~~~~ 411 (619)
.+.+.+..+-++.|++.|. ....+.+.+..++++-|.++|.++....++..+|.+++|.+.+....+ + -.-..|..
T Consensus 299 ~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~ 378 (403)
T PF03209_consen 299 GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGV 378 (403)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 7889999999999999999 677788899999999999999999999999999999999984422100 1 11222455
Q ss_pred hHHHHHHHHHHHHHH
Q 047440 412 PGWIMAVAWLFYLVW 426 (619)
Q Consensus 412 ~~~~~~~~~~~~~~~ 426 (619)
+|.+-++..++...+
T Consensus 379 VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 379 VFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHHHHH
Confidence 565555554444433
No 228
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=6.7e-05 Score=77.59 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=84.9
Q ss_pred HhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCc
Q 047440 289 IGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVP 366 (619)
Q Consensus 289 ~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~ 366 (619)
.++......++.++.+.+.|..|.|+.+.++.......-+..+- .|-+.++++-++.|+|.+. ..-..|+++..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 66777778899999999999999999998887765333333333 6788899999999999998 888899999999
Q ss_pred cchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 367 LKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 367 ~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
++.+.+..++.-+....+.++|..+...+
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 99999999988777777888776665555
No 229
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.35 E-value=1.3e-06 Score=93.04 Aligned_cols=125 Identities=11% Similarity=0.080 Sum_probs=99.8
Q ss_pred HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhh---c----cCcHHHHHHHHHH
Q 047440 276 MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAY---D----FSSIAVLLIGRLF 347 (619)
Q Consensus 276 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~---~----~~~~~~l~~~r~l 347 (619)
..+|.++...|++.+...++.+++....+++.+|++.|+++..+.++. ++.+...... . .++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 458999999999999999999999999999999999999888777655 4443322110 0 0233445555677
Q ss_pred hhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 348 CGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 348 ~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
.+++.+. .+...++.+..|++.+|...++.....++|..+|+.+++++.+..|
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7777776 6778999999999999999999999999999999999999966553
No 230
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.33 E-value=9.6e-06 Score=85.03 Aligned_cols=142 Identities=11% Similarity=0.012 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHh--CCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSL--GAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
....+..++...........++.+..+. +.+....+...+.+..+..+|.+++|++.||+++|+++.++.+.. +..+
T Consensus 235 ~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~l 314 (410)
T TIGR00885 235 REGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCL 314 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 3334444444434444456677777664 334444455677777888999999999999999999876666554 6666
Q ss_pred HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 328 MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 328 l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
+..+. ++... ..+-++.|++.+. |...+...+..+++....+.++... .+|.+++|++.|++.+.
T Consensus 315 l~~~~---~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 315 GSIFA---GGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHc---CChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHH
Confidence 66665 55444 3444566666555 8888888888876554333333333 39999999999999874
No 231
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.27 E-value=3.4e-06 Score=87.11 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=81.8
Q ss_pred HhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccC-cHHHH
Q 047440 265 YIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFS-SIAVL 341 (619)
Q Consensus 265 ~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~-~~~~l 341 (619)
.......|.+.++ +|.++.+.+++.++..++.+++.+++|+++||+|+|+.+..+.+.. ++.++..+....+ +.+.+
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (366)
T TIGR00886 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVF 321 (366)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence 3444556667764 7999999999999999999999999999999999988776555443 4433333321111 55544
Q ss_pred HHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHH
Q 047440 342 LIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALG 384 (619)
Q Consensus 342 ~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 384 (619)
++.-++.+++.|. +...+++++..| +++|.++|+.+....+|
T Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 322 IVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 4444444444333 455667777776 68999999988877665
No 232
>PRK11462 putative transporter; Provisional
Probab=98.26 E-value=1.4e-05 Score=85.12 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=77.0
Q ss_pred ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhh
Q 047440 281 AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-LFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVN 357 (619)
Q Consensus 281 s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~ 357 (619)
++...+.+.+++.++.+++.+++++++||+|+|+++..+.+ ..+..++..+. +..+.+.+++.-++.|++.+. +..
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~l~ 339 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-PMQASITMFVFIFVIGVLHQLVTPIQ 339 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677788889999999999999999999988754433 23322333222 113333445555666777655 555
Q ss_pred hhhhhccCc-------cchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 358 RRYISDCVP-------LKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 358 ~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
.++++|..+ .++.|..++....+.-+|..+|+.++|++..
T Consensus 340 ~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 340 WVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777765 3333555677778888999999998888743
No 233
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.25 E-value=4.1e-06 Score=64.49 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=68.5
Q ss_pred HhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHH
Q 047440 261 MVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIA 339 (619)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~ 339 (619)
+++...+.|.+|.+.++.++|.++.|++.++..+|+++|++...++.++..+++++..+++.. +..+.+++. ++++
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~---~~~~ 81 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT---HSFW 81 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH---hchH
Confidence 456778899999999999999999999999999999999999999999988888888888776 888888887 7766
Q ss_pred HH
Q 047440 340 VL 341 (619)
Q Consensus 340 ~l 341 (619)
.+
T Consensus 82 ~w 83 (85)
T PF06779_consen 82 LW 83 (85)
T ss_pred HH
Confidence 54
No 234
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.24 E-value=8.8e-06 Score=85.60 Aligned_cols=177 Identities=12% Similarity=0.030 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCch--------hHH-H
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFK--------PLV-F 317 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr--------~~~-~ 317 (619)
..++.+.++.+....+...+...+|.|.++ +|.+..+.|++.++..+.+.+..+++|.++||.-+| +++ .
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 567788888888899999999999999998 899999999999999999999999999999986442 222 2
Q ss_pred HHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 318 SSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 318 ~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
++.... ++.++.++....+....+++.-+..|+.+.. +....-..+. .++.-+..+|+.+....++.+++|.+.+.+
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 222222 3444444431112222222222223333222 2222222332 467789999999999999999999999999
Q ss_pred hccccccceeccccchhHHHHHHHHHHHHHHHhhh
Q 047440 396 QTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCIS 430 (619)
Q Consensus 396 ~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~ 430 (619)
...-....|++ .|++.+++.++..++..++
T Consensus 417 ~~~~t~~eW~~-----VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 417 VTDNTREEWRI-----VFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred eCCCCHHHHHH-----HHHHHHHHHHHhchheeEe
Confidence 63212236776 8888888876666544444
No 235
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.23 E-value=3.8e-06 Score=64.24 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=57.7
Q ss_pred HHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHH
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSI 320 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~ 320 (619)
...++...+.+...|.+|.+.++.|+++.++|.+.++..+...++++++|.++||+|+++.++...
T Consensus 7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 445556667888999999999999999999999999999999999999999999999888665443
No 236
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.18 E-value=1.7e-05 Score=73.89 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=74.2
Q ss_pred HHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhhccCc
Q 047440 258 FLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSS 337 (619)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~~~~~~~ 337 (619)
++...+.....|.+-.+...+|....++|.+.-+..-..++++.+.|.++|+-|||+.-+.-.+..+.+.+.-.+ +.
T Consensus 47 slmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhS---pq 123 (454)
T KOG4332|consen 47 SLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHS---PQ 123 (454)
T ss_pred HHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcC---Cc
Confidence 333445556667766667788888999998888877788888999999999999998532222222222233344 88
Q ss_pred HHHHHHHHHHhhccCcc--hhhhh-hhhccC
Q 047440 338 IAVLLIGRLFCGFGSAR--AVNRR-YISDCV 365 (619)
Q Consensus 338 ~~~l~~~r~l~G~~~~~--~~~~~-~i~~~~ 365 (619)
+-.++++|++.|++.+. .+.-+ +++|..
T Consensus 124 YkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 124 YKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred eEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998887 44444 456654
No 237
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.17 E-value=5e-05 Score=81.73 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=82.5
Q ss_pred hhHHHhhHHHHHHHHhhhh----hhhccccCchhHHHHHHHHH-HHHHHHHHhhcc------CcHHHHHHHHHHhhccCc
Q 047440 285 CGIVIGAMAIAQVFSSVYF----SAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDF------SSIAVLLIGRLFCGFGSA 353 (619)
Q Consensus 285 ~g~~~s~~~~~~~i~~~~~----G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~------~~~~~l~~~r~l~G~~~~ 353 (619)
.+++.++..+...++.++. +++.+|++....+.+++++. ++.++.+++... .+.+++++..++.|+|.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 5666777776666666665 66666666656666666655 676666555110 235688889999999998
Q ss_pred c--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhh
Q 047440 354 R--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGL 394 (619)
Q Consensus 354 ~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~ 394 (619)
. |+..+++.+..|++.||+++|.+..+..+|..++..+.+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~ 440 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL 440 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999988888888877776653
No 238
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.17 E-value=4.4e-05 Score=82.63 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNV 327 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~ 327 (619)
.+..+.+..|....+........+.+.+..|.+... .+...+..+...++..+.+.+.||+|||++++.+.+.. ++.+
T Consensus 296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~ 374 (513)
T KOG0254|consen 296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV 374 (513)
T ss_pred HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence 333444455555566777888888888888877544 55555666677778888899999999999998887654 6666
Q ss_pred HHHHhhccC-----------cHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 328 MYALAYDFS-----------SIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 328 l~~~~~~~~-----------~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
+++...... ......++-++..+..+. ++...+.+|.+|.+-|+.+.++......+...+-......+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~ 454 (513)
T KOG0254|consen 375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI 454 (513)
T ss_pred HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555441110 112233333444555565 77778899999999999999886655554443322222222
Q ss_pred hccccccceeccccchhHHHHHHHHHHHHH-HHhhhccCCchh
Q 047440 396 QTNFKIYKLTFNQNTLPGWIMAVAWLFYLV-WLCISFKEPSRD 437 (619)
Q Consensus 396 ~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~-~~~~~~pe~~~~ 437 (619)
.... ++ ...|...+.+..+... ..++++||+...
T Consensus 455 ~~~~---~~-----~~~f~~f~~~~~~~~~~fv~~~~pETkg~ 489 (513)
T KOG0254|consen 455 TEAL---GI-----GGTFGYFGGICLLSLIIFVFFFVPETKGL 489 (513)
T ss_pred HHhc---cc-----cchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence 2211 11 2256666666566666 678889998753
No 239
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.17 E-value=6e-06 Score=83.14 Aligned_cols=185 Identities=12% Similarity=-0.007 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhH--------HHhhH-HHHHHHHhhhhhhhccccCchhHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGI--------VIGAM-AIAQVFSSVYFSAWSNRSYFKPLVFS 318 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~--------~~s~~-~~~~~i~~~~~G~l~Dr~Grr~~~~~ 318 (619)
+.++..+...|+.-+.++........+...+|..+..... ...+. ..+++.|..+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5555566666766667777777777788877766544333 11111 22233366677889999999999999
Q ss_pred HHHHH-HHHHHHHHhhc-cCcHHHHHHHHHHhhccCcc---hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhh
Q 047440 319 SIVLF-IGNVMYALAYD-FSSIAVLLIGRLFCGFGSAR---AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAG 393 (619)
Q Consensus 319 ~~~~~-i~~~l~~~~~~-~~~~~~l~~~r~l~G~~~~~---~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~ 393 (619)
+.++. +..+..+..+. ..+...+++...+..+.... .....+-+|.+|.+-|+.+-|+..++.-+|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 88765 66666666533 12333344444444444333 455667799999999999999999999999999999888
Q ss_pred hhhcc--ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhh
Q 047440 394 LLQTN--FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDI 438 (619)
Q Consensus 394 ~l~~~--~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~ 438 (619)
++.++ ....+. +.++++.+.+.++..++. +++||+....
T Consensus 464 ~~t~~~yp~~~g~-----~~v~~i~~~~~~~gi~~T-~l~pEtk~~~ 504 (538)
T KOG0252|consen 464 YLTDHNYPPNIGV-----RNVFIILAGCMLLGILFT-LLIPETKGKS 504 (538)
T ss_pred HhhhccCCccccc-----hHHHHHHHHHHHHhHhee-EEeecccccC
Confidence 88551 111133 348888888765555444 5668876543
No 240
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.16 E-value=6.8e-05 Score=79.05 Aligned_cols=182 Identities=13% Similarity=-0.062 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHH--hCCccc-----h-----hhHHHhhHHHHHHHHhhhhhhhccccCc-hhH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMS--LGAAAT-----V-----CGIVIGAMAIAQVFSSVYFSAWSNRSYF-KPL 315 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~-----~-----~g~~~s~~~~~~~i~~~~~G~l~Dr~Gr-r~~ 315 (619)
.+..++..+++..++...+......+..+ ++.++. + -.+....+.+...+.+++...+.+++|+ |++
T Consensus 259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~ 338 (477)
T TIGR01301 259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL 338 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 34555566666666655444444444442 443211 1 2244445555556777788889999985 666
Q ss_pred HHHHHHHH-HHHHHHHHhhcc-Cc-----------------HHHHHHHHHHhhccCcc--hhhhhhhhccCcc--chhhh
Q 047440 316 VFSSIVLF-IGNVMYALAYDF-SS-----------------IAVLLIGRLFCGFGSAR--AVNRRYISDCVPL--KIRMQ 372 (619)
Q Consensus 316 ~~~~~~~~-i~~~l~~~~~~~-~~-----------------~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~--~~r~~ 372 (619)
..++.++. ++.+...+.... ++ .+..++.-.+.|+..+. .+.++++++..++ ++.|.
T Consensus 339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~ 418 (477)
T TIGR01301 339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL 418 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence 67776554 555555443100 11 36677778888999888 7888999999885 45599
Q ss_pred HhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 373 ASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 373 ~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
.+|+++.+..+..++..+..|.+...++ .+-.+ .+.+.++..+++.++.++.+|.++.
T Consensus 419 ~mgilN~~I~lpQii~sl~~g~~~~~~g-~~~~~-----~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 419 SMGVLNLAIVIPQIIVSLGSGPWDQLFG-GGNLP-----AFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCee-----HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999988888644333 12223 7788888888889999999998764
No 241
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.12 E-value=4.6e-05 Score=78.81 Aligned_cols=147 Identities=16% Similarity=0.242 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGN 326 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~ 326 (619)
.+.+.++..++...+..+.......|.+. +|.+....++.......+.+++.+++.++++|+|+|+++..+.++. ++.
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGY 316 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 33344444445454555555554445443 5777777788888888888888999999999999999998887655 777
Q ss_pred HHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCcc-------chhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 327 VMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPL-------KIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
++..+.+ .++.+.+++..++.++|.+. +...++++|..+- +.-|...|....+.=+|.+++..+.|++.
T Consensus 317 ~~~~f~~-~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 317 LLLYFTP-AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred HHHHhhc-CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777763 36788899999999999887 7788888887643 33467778888888889888888888773
No 242
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.09 E-value=0.00013 Score=76.57 Aligned_cols=137 Identities=10% Similarity=0.009 Sum_probs=85.0
Q ss_pred HhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHHHHHHHHHHh--hccC
Q 047440 261 MVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIVLFIGNVMYALA--YDFS 336 (619)
Q Consensus 261 ~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~~~i~~~l~~~~--~~~~ 336 (619)
...........|.+..+ +|.++.+.|+.......+..++..+.+.+.++ .++|.+.....+..++.++.... ...+
T Consensus 231 ~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~ 310 (413)
T PRK15403 231 YIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPH 310 (413)
T ss_pred HHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33334444556777766 69999999999888888888888888887655 44443322211212222222211 0114
Q ss_pred cHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 337 SIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 337 ~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
+++.++++.++.|+|.+. +...+.. ..-....+|++.++.+.....+..+|+.+++++...
T Consensus 311 ~~~~~~~~~~l~~~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 311 VWLWSVLGTSLYAFGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444456777778887776 4444322 111223479999999988888899999999988543
No 243
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.09 E-value=0.00018 Score=70.66 Aligned_cols=266 Identities=16% Similarity=0.072 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhcc-----ccCchhHHHHHHH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSN-----RSYFKPLVFSSIV 321 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D-----r~Grr~~~~~~~~ 321 (619)
.+.+.++.+...+.++..+... .+|.+.+.-|.|-++.+....++. -..--++|.++.| |+|||+.-++-.-
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence 3455666677778888888877 889999988888777776433222 2334578899999 9999986544433
Q ss_pred HHHHHHHHHHhhcc----------CcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHH
Q 047440 322 LFIGNVMYALAYDF----------SSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGP 389 (619)
Q Consensus 322 ~~i~~~l~~~~~~~----------~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~ 389 (619)
..+|.++..+++.. ++...+....++.-+..+. .+.-++.-.+..+++.|.+......+...|..+|.
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN 186 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence 33333333333111 2233333344566666666 77778877788888887776666666666655554
Q ss_pred HHhhhhhc-ccc---cccee----ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcC
Q 047440 390 ALAGLLQT-NFK---IYKLT----FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGL 461 (619)
Q Consensus 390 ~i~~~l~~-~~~---~~~w~----w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (619)
.+--.+.. .+- ..+|. ........++.+.+..+...+..+.-+|.+....+
T Consensus 187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~--------------------- 245 (510)
T KOG3574|consen 187 VVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDE--------------------- 245 (510)
T ss_pred ceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhh---------------------
Confidence 43332211 000 00121 00011123344444444444444433332221110
Q ss_pred CCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhccc
Q 047440 462 QQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFG 540 (619)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 540 (619)
+.........+-+++.+ -|.+...+.+....-+++.+-....++-+.+. |
T Consensus 246 ----------------------------e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~-G 296 (510)
T KOG3574|consen 246 ----------------------------ELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-G 296 (510)
T ss_pred ----------------------------hhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-C
Confidence 00112223344444443 57888888888888888888888888888776 9
Q ss_pred ccchhHHHHHHHhhhhHHHHHHHHH
Q 047440 541 WSTGAVAIFLACLGLTVLPVNIIVG 565 (619)
Q Consensus 541 ~s~~~~g~~~~~~~~~~~~~~~~~g 565 (619)
++..+.++......-..++.....|
T Consensus 297 v~ke~Lal~~v~~~plqI~l~~~~g 321 (510)
T KOG3574|consen 297 VPKEELALIAVPLVPLQIALPLYIG 321 (510)
T ss_pred CChhHheeeeeehhhHHHhhhhhhe
Confidence 9888876654333333344444444
No 244
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.07 E-value=0.0003 Score=71.60 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred hhHHHhhHHHHHHHHhhhhhhhccccCc-hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhh
Q 047440 285 CGIVIGAMAIAQVFSSVYFSAWSNRSYF-KPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYI 361 (619)
Q Consensus 285 ~g~~~s~~~~~~~i~~~~~G~l~Dr~Gr-r~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i 361 (619)
.|.+.-+-.+..++..+.+.++.+|... .|+.....+..++.++.+++ ++.+.-+++-++.|++.|. ....++.
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~---~~v~~~l~Gv~las~ssg~GE~tfL~lt 137 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS---PSVWVRLLGVVLASLSSGLGEVTFLSLT 137 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec---cchhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3445556667777788888888998663 34544444555888888888 8999999999999999888 5555554
Q ss_pred hccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCc
Q 047440 362 SDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPS 435 (619)
Q Consensus 362 ~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~ 435 (619)
..+++ ...+.++.+.+.|+++|+..-..+.. . ++. .+..+.+...+.++..+..++.+|.++
T Consensus 138 -~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~---g~s---~~~tll~~~~lp~~~~~~~f~~L~~~~ 199 (402)
T PF02487_consen 138 -HFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L---GLS---PRTTLLIMLVLPAIFLLSYFFLLPSPP 199 (402)
T ss_pred -HhcCc----cccccccCCcChhhHHHHHHHHHHHH-h---CcC---HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35553 35677888888888888877666644 3 222 233566666665555555555666543
No 245
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.07 E-value=7.8e-05 Score=79.87 Aligned_cols=136 Identities=13% Similarity=0.062 Sum_probs=96.1
Q ss_pred HHhhhHhhccChHHHHHH-hCCc----cchhhHHHhhHHHHHHHHhhhhhhhccccCchhH-------HHHHHHHH-HHH
Q 047440 260 YMVNTYIIVPTADDYSMS-LGAA----ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPL-------VFSSIVLF-IGN 326 (619)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~-~g~s----~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~-------~~~~~~~~-i~~ 326 (619)
....+......++.+.++ .+.+ ....+++.++..+..++.+|+.|++.||.|+|+. +..|+++. ++.
T Consensus 281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~ 360 (489)
T PRK10207 281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGF 360 (489)
T ss_pred HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHH
Confidence 333344444555666653 2221 1123566666777888899999999999998862 44555443 444
Q ss_pred HHHH-----Hhhc--cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 327 VMYA-----LAYD--FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 327 ~l~~-----~~~~--~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
+..+ .+.. ..++|+++...++.|+|.+. ++..+++.+..|++.+|.++|++....++|..+|..++...
T Consensus 361 ~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 361 LTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3221 1111 14678888889999999988 88899999999999999999999999999999998888765
No 246
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.07 E-value=8.4e-05 Score=65.42 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhcc
Q 047440 287 IVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDC 364 (619)
Q Consensus 287 ~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~ 364 (619)
.-.++......+++++.+.+.++.|.|+.++++.+......+..+- ++.+.++.+-++.|++.+. ++...++.+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---PNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 3445556667778888889999999999988887766444444455 7888999999999999998 8888999999
Q ss_pred CccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 365 VPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 365 ~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
.+++.+++..+++-.....+.++|.++...+
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888888888776665
No 247
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.01 E-value=8.1e-05 Score=74.26 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 047440 246 HFMSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF- 323 (619)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~- 323 (619)
+.+.+....++.|+...........++.+..+ .|.+..+.+...+.+..+.++|.++..++..|+...+++....+..
T Consensus 234 ~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i 313 (422)
T COG0738 234 QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI 313 (422)
T ss_pred hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 34555666677777776777788888889988 7889999999999999999999999999999998888776555443
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 324 IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 324 i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+.++..+++ ++.+.++.. ++.|+..+. |...+...+..| +-+...|..-.+..+|.++-|.+-|++.+..+
T Consensus 314 ll~~~~~l~---~g~v~~~~l-~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 314 LLLLAVALI---GGVVALYAL-FLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred HHHHHHHHh---cChHHHHHH-HHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhh
Confidence 566666666 776555554 567777776 999999988888 34455555666667888999999999988765
No 248
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.97 E-value=9.8e-08 Score=101.76 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=106.9
Q ss_pred hhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH--H-hhccC--
Q 047440 263 NTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYA--L-AYDFS-- 336 (619)
Q Consensus 263 ~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~--~-~~~~~-- 336 (619)
+........|.+.+..+.+.. -+......+...++.++...++||+|||++++.+.+.. ++.+.++ . .....
T Consensus 268 g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (451)
T PF00083_consen 268 GINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS 345 (451)
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 334444555667777777666 22222334555667777789999999999887777654 4444442 1 11111
Q ss_pred --cHHHHHHHH-HHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchh
Q 047440 337 --SIAVLLIGR-LFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLP 412 (619)
Q Consensus 337 --~~~~l~~~r-~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~ 412 (619)
+...+.... +..+++.+. +....+.+|.+|.+.|+.+.|+......+|.+++|.+...+.+..+ . ...
T Consensus 346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--~------~~~ 417 (451)
T PF00083_consen 346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG--G------WGV 417 (451)
T ss_pred ccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c------ccc
Confidence 222222222 222333344 6777889999999999999999999888998888888777754432 1 224
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhh
Q 047440 413 GWIMAVAWLFYLVWLCISFKEPSRDI 438 (619)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~pe~~~~~ 438 (619)
+++.+++.++..++.++++||+....
T Consensus 418 ~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 418 FLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred chhhHHHHHHHHhheeEEEeeCCCCC
Confidence 66667777777888889999987643
No 249
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=97.78 E-value=0.0028 Score=65.30 Aligned_cols=290 Identities=14% Similarity=0.033 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHH--hCCccchhhHHHhhHHHHHHHHhhhhhhhcc-----ccCchhHHHHHHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMS--LGAAATVCGIVIGAMAIAQVFSSVYFSAWSN-----RSYFKPLVFSSIVLF 323 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~D-----r~Grr~~~~~~~~~~ 323 (619)
.++.+.+++.++..+.....+|.+.++ -+.|-++.|...-+ ...+- .-++|.++.| |+|||+.-++-+=..
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 345566777777777777788989888 67887777754222 11111 2334444444 699998665544222
Q ss_pred --HHHHHHHHhh---------------c-c---C--cHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHH
Q 047440 324 --IGNVMYALAY---------------D-F---S--SIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFV 378 (619)
Q Consensus 324 --i~~~l~~~~~---------------~-~---~--~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~ 378 (619)
+..+..+... . . . +...+....++.-+-.+. .++-.+.-.+..+++++.|.....
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 2222222221 0 0 0 111222333233333344 666677777777888877776666
Q ss_pred HHHHHHhHHHHHHhhhhhc-ccccccee-------ccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCC
Q 047440 379 SASALGMACGPALAGLLQT-NFKIYKLT-------FNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAE 450 (619)
Q Consensus 379 ~~~~~G~~~g~~i~~~l~~-~~~~~~w~-------w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~ 450 (619)
.+.++|..++..+--.+.. .+-..-+| ......-..+.+.+.++..+.+.++-+|.|.......
T Consensus 161 vG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~-------- 232 (544)
T PF13000_consen 161 VGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPK-------- 232 (544)
T ss_pred hHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcc--------
Confidence 6666666665554444421 10000000 0001111233444545555555566666654322100
Q ss_pred CCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCC-CCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHh
Q 047440 451 PVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSD-ETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILL 528 (619)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 528 (619)
.+..+ ..+...++...+.++.+ .........+..++.+++.+ .|++..++++.....+++....
T Consensus 233 -~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~d 298 (544)
T PF13000_consen 233 -IEPIN-------------KSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQAND 298 (544)
T ss_pred -ccccc-------------cccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccch
Confidence 00000 00000000000000000 00001112234455555555 5788888888888888877766
Q ss_pred hchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHH
Q 047440 529 SESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVG 565 (619)
Q Consensus 529 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 565 (619)
....+=+.+. |++....+++..+..-..++....++
T Consensus 299 a~T~LKLlEk-G~~KE~LAl~~li~~P~qii~~~~~~ 334 (544)
T PF13000_consen 299 AVTSLKLLEK-GLSKEDLALLVLIDFPFQIILPYYIG 334 (544)
T ss_pred hhhHHHHHHc-CCCHHHhHHHHHHhhhHHHHHHHHhh
Confidence 6666666665 99888877765554444555555555
No 250
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.76 E-value=0.0082 Score=63.47 Aligned_cols=117 Identities=12% Similarity=0.122 Sum_probs=72.0
Q ss_pred ccchhhHHHhhHHH-HHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHh-hc------cCc--------------
Q 047440 281 AATVCGIVIGAMAI-AQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALA-YD------FSS-------------- 337 (619)
Q Consensus 281 s~~~~g~~~s~~~~-~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~-~~------~~~-------------- 337 (619)
.+..+..+=....+ +.++...+...++++++|.+++-+.+..+ ....++++. +| .+.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 44455555443333 34556778899999999999775444332 222222221 10 011
Q ss_pred -------HHHHHHHHHHhhccCcc--h-hhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 338 -------IAVLLIGRLFCGFGSAR--A-VNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 338 -------~~~l~~~r~l~G~~~~~--~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
.|...+..++.-+-+.. + .-..+..|.++.++-.+..++++.+.++|.++++.+..++..
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222222 2 347888999999999999999999999999999888888865
No 251
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.75 E-value=0.00018 Score=55.02 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHH
Q 047440 511 KVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIM 584 (619)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~ 584 (619)
+.+-..+++...+...+..++|.|..+. |+++.++|++.++..+..+++..+.| +++||.++++.+..+..+
T Consensus 3 ~~lk~~yf~~f~~~g~~~Pfl~~~~~~~-Gl~~~~iGil~~i~~~~~~~~~pl~g-~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 3 LPLKAFYFFYFAALGCLYPFLPLYLKQL-GLSPSQIGILSAIRPLIRFLAPPLWG-FLADKFGKRKVILLGSLF 74 (77)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHhhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCccHHHHHHHHH
Confidence 3445567777777888889999999985 99999999999999999999999999 999999999887766544
No 252
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.00031 Score=74.35 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccc----cCchhHHHHHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR----SYFKPLVFSSIVL 322 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr----~Grr~~~~~~~~~ 322 (619)
+.++...++.++.....+.....+|.+.++ .|.+..+.+.+.+.+.++.+++.+++|+++|| ..+|..+...+.+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445666667777777777788889999998 56899999999999999999999999999999 5566665555543
Q ss_pred H--HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccch-hhhHhHHHHHHHHHHhHHHHH
Q 047440 323 F--IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKI-RMQASAGFVSASALGMACGPA 390 (619)
Q Consensus 323 ~--i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~g~~ 390 (619)
. ++.+..... .+.+....+-+..+.+.+. +.+...+.+...+.. |-...+....+.+.+.+++|.
T Consensus 353 ~~~~g~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~ 422 (495)
T KOG2533|consen 353 YAIIGAISLLAA---AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ 422 (495)
T ss_pred HHHHHHHHHHhh---ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence 3 554444443 3333333322222222222 666677777665443 444444445444444444433
No 253
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.63 E-value=0.00032 Score=74.32 Aligned_cols=85 Identities=8% Similarity=0.111 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhcc-chHHHHHHHHHHHH
Q 047440 508 PSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMF-EDRQILLASEIMVC 586 (619)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~-g~r~~l~~~~~~~~ 586 (619)
+.++.++...+...++++++..++|.|+.+.+|++..+++.+.+...+...++.++.| +++||+ |+|+.+.++.++++
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG-~LaDRilGrrr~iliG~il~~ 87 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGG-FLADKVLGNRMAVMLGALLMA 87 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHHHH
Confidence 3456666677778888899999999999988999999999999888888787777777 999999 99999999999888
Q ss_pred HHHHhhc
Q 047440 587 IGILFSF 593 (619)
Q Consensus 587 i~~~~~~ 593 (619)
++.+++.
T Consensus 88 lg~lll~ 94 (493)
T PRK15462 88 IGHVVLG 94 (493)
T ss_pred HHHHHHH
Confidence 8876554
No 254
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.61 E-value=0.00069 Score=67.05 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=97.1
Q ss_pred HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccC--chhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccC
Q 047440 276 MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY--FKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGS 352 (619)
Q Consensus 276 ~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G--rr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~ 352 (619)
..+|.++.+.|-+.+...+++++.+...++..+|.. -+.++..++... =..++...+ .....+.++-.+-.+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~---~~~~~l~~~s~l~sf~~ 366 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA---RTPVVLYLGSTLKSFST 366 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc---ccchhhhHHHHHHHHHH
Confidence 458999999999999999999999999999999976 555555555544 344445555 66677888888887777
Q ss_pred cc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 353 AR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 353 ~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
+. +....++....|.++||.++|+.....+++-++||+++|.+.
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 66 777788899999999999999999999999999999998884
No 255
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.58 E-value=0.0017 Score=70.52 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=102.6
Q ss_pred hhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHH
Q 047440 266 IIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIG 344 (619)
Q Consensus 266 ~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~ 344 (619)
.....++.....+|.+... ......+....+....+...|++|||.....+.+.. ++.++.++.......+...+.
T Consensus 336 ~~y~gl~~~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (521)
T KOG0255|consen 336 LVYYGLSLNVSGLGGNIYL---NFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWIL 412 (521)
T ss_pred HHHHhhhhhhhhcCchHHH---HHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 3333334444455554332 223333344445555588999999999998888776 777777776322221233344
Q ss_pred HHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHH
Q 047440 345 RLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 345 r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~ 422 (619)
..+..++.+. .....+.+|.+|...|..+.+...+...+|.+++|.+......... ..++.+.+.+..+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~---------~~~~~~~~~~~~l 483 (521)
T KOG0255|consen 413 PLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP---------LLGLILFGWLALL 483 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---------cchHHHHHHHHHH
Confidence 4444333333 5558999999999999999999999999999999998876644221 1133334556666
Q ss_pred HHHHHhhhccCCchh
Q 047440 423 YLVWLCISFKEPSRD 437 (619)
Q Consensus 423 ~~~~~~~~~pe~~~~ 437 (619)
..++..+++||+...
T Consensus 484 ~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 484 LGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHhcCcccCCC
Confidence 666776888998753
No 256
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.40 E-value=0.0013 Score=69.08 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=104.1
Q ss_pred HhCCccchhhHHHhhHHHHHHHHhhhhh-hhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc
Q 047440 277 SLGAAATVCGIVIGAMAIAQVFSSVYFS-AWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR 354 (619)
Q Consensus 277 ~~g~s~~~~g~~~s~~~~~~~i~~~~~G-~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~ 354 (619)
.++.+..+.+.+.+...+...+++++.. .+...+|-|+++..|++.- +..++.+++ ++.|+++...++.++....
T Consensus 271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~---~~~w~~~~~~v~~~~~~~~ 347 (463)
T KOG2816|consen 271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA---TETWMMFAAGVVVALAGIV 347 (463)
T ss_pred ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh---ccchhhhHHHHHHHhhcch
Confidence 5899999999998988888888888887 5666688888888888765 899999999 9999999999999988888
Q ss_pred -hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 355 -AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 355 -~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
++..+.++.+..++++|+++++.....++..+++|.+-+.+
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999988887
No 257
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.40 E-value=0.0029 Score=61.85 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=82.7
Q ss_pred HHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc-hhhhhhhhccCccchhh
Q 047440 294 IAQVFSSVYFSAWSNRSYFKPLVFSSIV-LFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AVNRRYISDCVPLKIRM 371 (619)
Q Consensus 294 ~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~ 371 (619)
-.+++.-.+.=.+.|....||+++.-.+ ..+..++..+. ++.+.+=+.-++.|...+. .+-++|+-..++++++.
T Consensus 53 YSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g---~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yq 129 (433)
T KOG3810|consen 53 YSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG---PSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYK 129 (433)
T ss_pred HHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc---CCchheeeehhhcChHHHHHHhhhheeeeecCHHHHH
Confidence 3445555566678999888998765544 44677777777 9999999999999999998 99999999999999999
Q ss_pred hHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 372 QASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 372 ~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
++.|...++.-.|...|..++-.+.
T Consensus 130 rvt~y~RaA~L~g~~~g~vlaQlLv 154 (433)
T KOG3810|consen 130 RVTGYCRAAFLVGKFVGSVLAQLLV 154 (433)
T ss_pred HHHHHhHHHHHHHhHHHhHHHHHHh
Confidence 9999999998888888888888773
No 258
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.39 E-value=0.0017 Score=69.94 Aligned_cols=147 Identities=14% Similarity=0.042 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCcc---chhhHHHhhHHHHHHHHhhhhhhhccccCch-hHHHHHHHH
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAA---TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFK-PLVFSSIVL 322 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~---~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr-~~~~~~~~~ 322 (619)
+.+.+.+++.++.++.+.......|..... ++-++ ...+++...+.++..+++.+.|.+.-+.+|- +.++++.++
T Consensus 310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~ 389 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVL 389 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 445555566666666666555666666554 44443 3578888889999999999999999887764 455555544
Q ss_pred H-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 323 F-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 323 ~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
. +++.+++.. ..+|....+..-++.|+|.|. ......+.-..|++..|.+.|+....-.+|..+|..+..-+
T Consensus 390 ~ta~~Gama~~-~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 390 MTAFCGAMAAV-RPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred HHHHHHHHHHc-cCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3 443333332 224555566777888998887 34444455567899999999999999999999988877665
No 259
>PTZ00207 hypothetical protein; Provisional
Probab=97.34 E-value=0.0039 Score=67.50 Aligned_cols=184 Identities=14% Similarity=0.015 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHHh-CCcc-chhhH-HHhhHHHHHHHHhhhhhhhcc----ccC----chh-H
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMSL-GAAA-TVCGI-VIGAMAIAQVFSSVYFSAWSN----RSY----FKP-L 315 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~-~~~g~-~~s~~~~~~~i~~~~~G~l~D----r~G----rr~-~ 315 (619)
..+++++...++.......+..-+.++.+.+ |.+. .+... +++++.++.++|.+..|.+.. |.. .|+ .
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~ 432 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIA 432 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHH
Confidence 4556666666665544555556677788888 6633 32233 789999999999999998872 111 122 2
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHH-HHHh
Q 047440 316 VFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACG-PALA 392 (619)
Q Consensus 316 ~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g-~~i~ 392 (619)
+.+..+..++.+++++. ..-..+++.-++.|++.|. ++....++|++. ++-|+-..+...+..+|..+- ..+.
T Consensus 433 l~~~~~~~~~~lll~~~---~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~ 508 (591)
T PTZ00207 433 LFIPSVCIITMLTLFLT---LPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY 508 (591)
T ss_pred HHHHHHHHHHHHHHHHH---CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence 23333433666666665 2226899999999999999 888999999999 888998888888888888765 5566
Q ss_pred hhhhcccc--ccc---eeccccchhHHHHHHHHHHHHHHHhhhccCCc
Q 047440 393 GLLQTNFK--IYK---LTFNQNTLPGWIMAVAWLFYLVWLCISFKEPS 435 (619)
Q Consensus 393 ~~l~~~~~--~~~---w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~ 435 (619)
|.+.+.-. ..+ ..-.=++.+|++.++++++..+....+.-+..
T Consensus 509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 66632110 000 00111466899998888888777665544443
No 260
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.26 E-value=0.19 Score=52.15 Aligned_cols=147 Identities=8% Similarity=0.031 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHhhhHhhccChHHHHHHh---CCccchhhHHHhhHHH-HHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440 247 FMSLLLNLANTFLYMVNTYIIVPTADDYSMSL---GAAATVCGIVIGAMAI-AQVFSSVYFSAWSNRSYFKPLVFSSIVL 322 (619)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~s~~~~-~~~i~~~~~G~l~Dr~Grr~~~~~~~~~ 322 (619)
+..++.+.+..++..+.++..-+ +.+.+ ..++..++++=+..-+ +.++..++.+.+.++.-+.+++-..+..
T Consensus 26 ~~kflpl~Ll~f~I~~ny~~lR~----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~ 101 (509)
T COG3202 26 LKKFLPLALLFFCILFNYNLLRS----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGF 101 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33444444444444444443322 23333 2456677787777777 6778889999999999999887544433
Q ss_pred H-HHHHHHHHhhc------cCc-----------------------HHHHHHHHHHhhccCcc---hhhhhhhhccCccch
Q 047440 323 F-IGNVMYALAYD------FSS-----------------------IAVLLIGRLFCGFGSAR---AVNRRYISDCVPLKI 369 (619)
Q Consensus 323 ~-i~~~l~~~~~~------~~~-----------------------~~~l~~~r~l~G~~~~~---~~~~~~i~~~~~~~~ 369 (619)
+ ...+++++... .++ .|..-+...+.=+-.+. -.-.....|.+..++
T Consensus 102 F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~e 181 (509)
T COG3202 102 FLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEE 181 (509)
T ss_pred HHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3 33444444311 011 12222222222222222 244577889999999
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHhhhhhc
Q 047440 370 RMQASAGFVSASALGMACGPALAGLLQT 397 (619)
Q Consensus 370 r~~~~~~~~~~~~~G~~~g~~i~~~l~~ 397 (619)
-.+.+++++.+.+++..++..+..++..
T Consensus 182 akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 182 AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999888888854
No 261
>PRK03612 spermidine synthase; Provisional
Probab=97.23 E-value=0.0063 Score=65.36 Aligned_cols=118 Identities=16% Similarity=0.052 Sum_probs=69.0
Q ss_pred HhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHH---HHHHHHHHHHHHHHh-hccCcH-HHHHHHHHHhhcc
Q 047440 277 SLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVF---SSIVLFIGNVMYALA-YDFSSI-AVLLIGRLFCGFG 351 (619)
Q Consensus 277 ~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~---~~~~~~i~~~l~~~~-~~~~~~-~~l~~~r~l~G~~ 351 (619)
-+|.+....+.+.+++.+|..+|+.++|++.++.-++...+ ++++..++..+.... .....+ ..++...++.|+.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888889999999999999999999998874432322211 111111111111111 000111 1223333445565
Q ss_pred Ccc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 352 SAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 352 ~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
.|+ |....+..+.. .++-+...|.......+|.++|.++.+++
T Consensus 124 ~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 124 IGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 555 55444443322 22346778888999999999999998887
No 262
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.01 E-value=0.0023 Score=66.16 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCc------HHHHHHHHHHhhccCcc--hhhhhhhhccCccc---hhhhHhHHHHHHH
Q 047440 313 KPLVFSSIVLFIGNVMYALAYDFSS------IAVLLIGRLFCGFGSAR--AVNRRYISDCVPLK---IRMQASAGFVSAS 381 (619)
Q Consensus 313 r~~~~~~~~~~i~~~l~~~~~~~~~------~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 381 (619)
|.+++.+++..+|.+++.++..... .+.++++-++.++|.|+ |...++++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 3444555555577777555422222 36788889999999888 99999999999765 5677888999999
Q ss_pred HHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHH
Q 047440 382 ALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWL 427 (619)
Q Consensus 382 ~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~ 427 (619)
++|..+++.+.+++.+.. +|.+ .|.+.++..+++.+..
T Consensus 82 n~G~~~~~~~~~~i~~~~---~~~~-----~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNY---GWFL-----GFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS----HHH-----HHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhcccc---chhh-----hhhHHHHHHHHHHHHH
Confidence 999999999999998666 4444 7777776655554443
No 263
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=96.87 E-value=0.12 Score=50.53 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=62.9
Q ss_pred HHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCc--cc
Q 047440 293 AIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVP--LK 368 (619)
Q Consensus 293 ~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~--~~ 368 (619)
.+..+.+.++.+.++.++|-|+.+..++......+..-+- +.+..++-.-.+.|+|.+. ..--+|+++... .+
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~---pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~ 144 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE---PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYAN 144 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc---hhHHhhccHHHhhccccccccccCcceecHHHHHHHH
Confidence 4445566666668889999999988777655333333333 6788888888999999876 444444443322 12
Q ss_pred hh---------hhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 369 IR---------MQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 369 ~r---------~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
.| .+..|.+.+.+..+...|..++..+
T Consensus 145 ~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 145 QRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 33 4556666666666666665555444
No 264
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.84 E-value=0.0031 Score=64.03 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=81.0
Q ss_pred HHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCc-hhHHHHHHHHH-HHHHHH-HHhhccCcHHHHHHHHHHhhc
Q 047440 274 YSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYF-KPLVFSSIVLF-IGNVMY-ALAYDFSSIAVLLIGRLFCGF 350 (619)
Q Consensus 274 ~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Gr-r~~~~~~~~~~-i~~~l~-~~~~~~~~~~~l~~~r~l~G~ 350 (619)
.+..-|.+....|++.....++.++++.+.|.++||... |..++...... ++.+.. .+.......+.++..-.+.|+
T Consensus 292 ~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~ 371 (480)
T KOG2563|consen 292 ALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF 371 (480)
T ss_pred ccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence 333446677889999999999999999999999999754 44444444433 442222 222111333445555566666
Q ss_pred cCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 351 GSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 351 ~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
+... |+..-+-.|..-|..-+...|+.++...+-+++-..+-+.+...++..+|.+
T Consensus 372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~ 429 (480)
T KOG2563|consen 372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTF 429 (480)
T ss_pred hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCc
Confidence 6555 8888888887655555666777666555555555555555544443223444
No 265
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.73 E-value=0.0005 Score=71.01 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=74.4
Q ss_pred HHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchh-HHHHHHHHH-HHHHHHHHh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKP-LVFSSIVLF-IGNVMYALA 332 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~-~~~~~~~~~-i~~~l~~~~ 332 (619)
+..+......+.+.|.++.+.+++|+++.+.|.+++.-.+..+++.|++|.++||+.+++ .++.+++.. ...++..+.
T Consensus 18 ~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 18 LFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred eeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 444555667788999999999999999999999999999999999999999999987655 667777665 566666666
Q ss_pred hcc-CcHHH----------HHHHHHHhhccCc
Q 047440 333 YDF-SSIAV----------LLIGRLFCGFGSA 353 (619)
Q Consensus 333 ~~~-~~~~~----------l~~~r~l~G~~~~ 353 (619)
++. .+... .-..|+.-|++..
T Consensus 98 ~P~~~~~i~~~~~~c~~~~~~~~~~~~~v~l~ 129 (618)
T KOG3762|consen 98 PPVDKNRIHEVFFCCDSSGLDSGRALRGVTLP 129 (618)
T ss_pred cCcccCcccccccccccccCchhhhccCccce
Confidence 432 22221 4455666666543
No 266
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=96.58 E-value=0.045 Score=59.31 Aligned_cols=161 Identities=12% Similarity=0.023 Sum_probs=108.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhh-HhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHH
Q 047440 243 QKYHFMSLLLNLANTFLYMVNT-YIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSI 320 (619)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~ 320 (619)
+...|+.....+....+..+.+ ++....+..+..+++.+...+.-..+.+.-......+.++.++|- +||-+.+.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445665555555555555444 333444555556788888888888888888888899999999997 78888776655
Q ss_pred HHH-HHHHHHHHh-------hc----------cC--c---HHHHHHHHHHhhccCcc--hhhhhhhhccCc---c-ch--
Q 047440 321 VLF-IGNVMYALA-------YD----------FS--S---IAVLLIGRLFCGFGSAR--AVNRRYISDCVP---L-KI-- 369 (619)
Q Consensus 321 ~~~-i~~~l~~~~-------~~----------~~--~---~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~---~-~~-- 369 (619)
++. +|.++..+. +. .. + ...++.+.-+..+|.|+ +...++-+|-++ + +.
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 443 554443332 10 00 1 23566666677778777 888899999887 3 22
Q ss_pred hhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 370 RMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 370 r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
+...+.++.....+|..++-.+..++.+.. +|.+
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~---~w~l 225 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNV---GWKL 225 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcc---ccee
Confidence 236778889999999999888888876554 5666
No 267
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.54 E-value=0.061 Score=55.83 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=94.3
Q ss_pred hhhHHHhhHHHHHHHHhhhhhhhccccCch---hH----HHHHHHHH-HHHHHHHHh-------hccCcHHHHHHHHHHh
Q 047440 284 VCGIVIGAMAIAQVFSSVYFSAWSNRSYFK---PL----VFSSIVLF-IGNVMYALA-------YDFSSIAVLLIGRLFC 348 (619)
Q Consensus 284 ~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr---~~----~~~~~~~~-i~~~l~~~~-------~~~~~~~~l~~~r~l~ 348 (619)
..++..+...+.-++.+|+..++.-+.+++ +. +..+++++ .+.++.... ....+.++++...+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 356778888888888888877777774433 21 22333333 333333332 1125788999999999
Q ss_pred hccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh------hccccccceeccccchhHHHHHHHH
Q 047440 349 GFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL------QTNFKIYKLTFNQNTLPGWIMAVAW 420 (619)
Q Consensus 349 G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l------~~~~~~~~w~w~~~~~~~~~~~~~~ 420 (619)
++|.=. |+..++++...|+.-.+..++.+......|..++..+++.- ..... ....|+..+...
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~--------~~~~F~~~g~v~ 476 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFI--------EGRVFGTIGVVA 476 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhh--------hhhhHHHHHHHH
Confidence 999776 99999999999999999999999988888888877777631 11110 122566666666
Q ss_pred HHHHHHHhhhcc
Q 047440 421 LFYLVWLCISFK 432 (619)
Q Consensus 421 ~~~~~~~~~~~p 432 (619)
.+..+......|
T Consensus 477 i~~~~~~~~~~~ 488 (498)
T COG3104 477 IVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHhhH
Confidence 666555544433
No 268
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.27 E-value=1.4 Score=46.48 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccc-cceeccccchhH
Q 047440 337 SIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKI-YKLTFNQNTLPG 413 (619)
Q Consensus 337 ~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~-~~w~w~~~~~~~ 413 (619)
.++..++.-++.|++.|. ....++.+ .+|++. ++.+..+.+++++++.++.-........ .+-++. ...|
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~--a~~Y 177 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKS--ALGY 177 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhh--hhhH
Confidence 466677777888888877 55555555 566543 3444444444444444332221110100 012221 2245
Q ss_pred HHHHHHHHHHHHHHhhhccCCch
Q 047440 414 WIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
+..+++..+..++++..++..|.
T Consensus 178 F~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 178 FGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH
Confidence 55555555555556666676654
No 269
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.18 E-value=0.024 Score=59.05 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=62.7
Q ss_pred hhhhhhhcccccchh-HHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHH
Q 047440 531 SSVVTTYYFGWSTGA-VAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGL 609 (619)
Q Consensus 531 ~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~ 609 (619)
..+++.+.+|++..+ .|.++++...+-++..++.| +++||+|.|+++.++++.-++..+++.+.. +...+.+.-+
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~G-lLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~---Sl~~L~i~R~ 123 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVF-LLTDYLRYKPVLVLQALSFVCVWLLLLLGT---SVWHMQLMEV 123 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHH-HHHHHhCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344666678999999 99999999999999999988 999999999999998888887777776654 4455555544
Q ss_pred Hhhhc
Q 047440 610 VLFVF 614 (619)
Q Consensus 610 ~~~~g 614 (619)
+.+++
T Consensus 124 llGva 128 (511)
T TIGR00806 124 FYSVT 128 (511)
T ss_pred HHHHH
Confidence 44443
No 270
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.97 Score=46.18 Aligned_cols=170 Identities=12% Similarity=0.035 Sum_probs=74.9
Q ss_pred HHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHH----HHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHh
Q 047440 257 TFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIA----QVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALA 332 (619)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~----~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~~ 332 (619)
.+.....+.....+.+.+.+++-.++. .-...+.+.+. .++....-..+.-|..+|-.....+...+..+.+.++
T Consensus 27 GiG~LlpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~ 105 (406)
T KOG1479|consen 27 GIGTLLPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLA 105 (406)
T ss_pred hcccccchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566777777777777533222 33333333333 3344444444444421121112222212222333333
Q ss_pred h------ccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccce
Q 047440 333 Y------DFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKL 404 (619)
Q Consensus 333 ~------~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w 404 (619)
. ....++..++.-.+.|++.|. .......++ +|++.-...++-.+.++.+-+++--+.-....+..
T Consensus 106 ~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~----- 179 (406)
T KOG1479|consen 106 LVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSR----- 179 (406)
T ss_pred hhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCC-----
Confidence 2 113455666666777777776 444444444 56655443333333333322222222222221111
Q ss_pred eccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 405 TFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 405 ~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
- -...|++.+.+..+..++++..+|..|-
T Consensus 180 -~--sA~~yF~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 180 -T--SALIYFITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred -c--eeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence 0 1224555555545555555557777664
No 271
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.11 E-value=0.043 Score=54.72 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=60.3
Q ss_pred hcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhhccc
Q 047440 537 YYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAE 616 (619)
Q Consensus 537 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 616 (619)
+.+|++..+++.++....+.+.+.+.++| .++||+|||+..+..+++.+++++.-.. + +.+.++++-++.+++.+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G-~laD~~Grk~~cl~~cily~~scl~k~~-~---~~~~L~~GRvlgGiaTS 136 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVG-SLADRYGRKKACLLFCILYSLSCLTKHS-S---NYPVLLLGRVLGGIATS 136 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHHHhc-c---ccHHHHHHHHHHHHHHH
Confidence 35799999999999998888888899989 9999999999998888888888764332 3 55666666666666655
Q ss_pred c
Q 047440 617 V 617 (619)
Q Consensus 617 ~ 617 (619)
+
T Consensus 137 L 137 (354)
T PF05631_consen 137 L 137 (354)
T ss_pred H
Confidence 4
No 272
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.03 E-value=0.043 Score=42.43 Aligned_cols=72 Identities=10% Similarity=-0.012 Sum_probs=59.7
Q ss_pred HHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 523 VMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 523 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+-+.+...+|....+. ++|..+.|++-+...++..++.+... ++.++.++++.+..+.+...+.++.+....
T Consensus 7 gRFayTplLP~M~~~~-~ls~~~ag~lasaNy~GYL~GAl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 7 GRFAYTPLLPLMQADG-GLSLSQAGWLASANYLGYLVGALLAS-RLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHHhHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677777776 99999999999999999999999988 888888888888888888888887776655
No 273
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.00 E-value=0.11 Score=53.18 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=77.5
Q ss_pred ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH---HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--h
Q 047440 281 AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF---IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--A 355 (619)
Q Consensus 281 s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~---i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~ 355 (619)
...+..+...+|.+|-+++.--...+ |+ |++.+.+++-. +..++.+.....++.|.+++.-+..|+.+|. .
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 35567777888888877764433221 33 33433333211 2222222111227899999999999998888 7
Q ss_pred hhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 356 VNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 356 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
.....+.+-.|+++|..++|....+-++|.+++.+++-++.
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77778888899999999999999999999999988887764
No 274
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.24 Score=51.72 Aligned_cols=144 Identities=23% Similarity=0.219 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHH---HhCCccc-hhhHHHhhHHHHHHHHhhhhhhhccc---cCchhHHHHHHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSM---SLGAAAT-VCGIVIGAMAIAQVFSSVYFSAWSNR---SYFKPLVFSSIVLF 323 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~-~~g~~~s~~~~~~~i~~~~~G~l~Dr---~Grr~~~~~~~~~~ 323 (619)
+++....+..++.........|.-.. ..+.+.. ..++..-...+|..+++.+++.+.+| +||++.+..+.+..
T Consensus 243 l~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~ 322 (461)
T KOG3098|consen 243 LLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIH 322 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHH
Confidence 33334444444444444444444332 3333332 33444445566777777888888876 89999887777654
Q ss_pred -HHHHHHHHhhc---------------cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHh
Q 047440 324 -IGNVMYALAYD---------------FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGM 385 (619)
Q Consensus 324 -i~~~l~~~~~~---------------~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 385 (619)
++.++.....+ .+++...++.-++.|++-+. +..+.+++... +++|..+.++...-.+++.
T Consensus 323 ~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 323 LIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVAS 401 (461)
T ss_pred HHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHH
Confidence 55555544422 12466777788899999888 78888888888 6788899998888888887
Q ss_pred HHHHHHhhhh
Q 047440 386 ACGPALAGLL 395 (619)
Q Consensus 386 ~~g~~i~~~l 395 (619)
.++-......
T Consensus 402 ~v~~f~~~~~ 411 (461)
T KOG3098|consen 402 CVAFFFSPYL 411 (461)
T ss_pred HHHhhhhhhh
Confidence 7765555544
No 275
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.74 E-value=0.62 Score=48.63 Aligned_cols=129 Identities=18% Similarity=0.056 Sum_probs=90.2
Q ss_pred hccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH---Hhhcc----CcH
Q 047440 267 IVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYA---LAYDF----SSI 338 (619)
Q Consensus 267 ~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~---~~~~~----~~~ 338 (619)
....+..|...-|+++..+|..-++..+..+.+.+.+.++.+|+|..+.=+.++.+- ++..++. +.+.. .+.
T Consensus 277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA 356 (432)
T ss_pred CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 345566678888999999999999999999999999999999999877666665543 2222222 12111 123
Q ss_pred HHHHHHHHHhhcc-Ccc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 339 AVLLIGRLFCGFG-SAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 339 ~~l~~~r~l~G~~-~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
..++.+-++.=+| .+. ....-++-|.+|+++||...|.-....++-.++-..++-.+
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444344 233 67778888999999999999998888888877776665544
No 276
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.47 E-value=0.036 Score=58.45 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=96.2
Q ss_pred CccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhc-------cCcHHHHHHHHHHhhcc
Q 047440 280 AAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYD-------FSSIAVLLIGRLFCGFG 351 (619)
Q Consensus 280 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~-------~~~~~~l~~~r~l~G~~ 351 (619)
.++...|.+..+..++.++|..++..+.-+..-|+++..+.+.. +..+.-..... .++.+..+..-++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 78888898888888888888888877766666677665555433 33222111100 01122222233444444
Q ss_pred Ccc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhh
Q 047440 352 SAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCI 429 (619)
Q Consensus 352 ~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~ 429 (619)
.+. .+...+++++.|+..-|..+++.....++|..++..++..+.+.++...-.+.......++..++.++.+++ ..
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~l-l~ 410 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPL-LF 410 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH-HH
Confidence 444 556678899999999999999999999999999999999986555321212221233455555555444444 34
Q ss_pred hccCCch
Q 047440 430 SFKEPSR 436 (619)
Q Consensus 430 ~~pe~~~ 436 (619)
++|+..+
T Consensus 411 lLp~~~~ 417 (433)
T PF03092_consen 411 LLPPQKR 417 (433)
T ss_pred HcCCCch
Confidence 5565443
No 277
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.003 Score=58.86 Aligned_cols=67 Identities=6% Similarity=0.007 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhh---------ccccCchhHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAW---------SNRSYFKPLV 316 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l---------~Dr~Grr~~~ 316 (619)
.+....+.++.-+..+.....+-.++++.|.++.....++-+..+.-++..++.|.. .||+|||...
T Consensus 19 vf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 19 VFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred eeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 334445556555555666666777889999999988888888888888988888754 4678888754
No 278
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.23 E-value=0.032 Score=61.89 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhccc
Q 047440 518 FMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
++......++.......+++.++++..+.|++.+...++.+++.++++ ++.||.+|++.+.+++++++++.++....
T Consensus 42 ~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~-~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 42 QLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVS-YFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHH-HhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 333434444555455566777899999999999999999999999999 99999999999999999999988776543
No 279
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=93.70 E-value=0.11 Score=53.46 Aligned_cols=79 Identities=9% Similarity=0.153 Sum_probs=64.8
Q ss_pred hhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhh
Q 047440 534 VTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFV 613 (619)
Q Consensus 534 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~ 613 (619)
=.++.++.++...|++..+..++..+++.+.| ++.||++|++++.+|..+-.++.+...+.. .+|++++.-.+.++
T Consensus 58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~g-yLadryNR~~v~~vG~~iW~~Av~~~~fs~---~Fwq~~l~R~~vGi 133 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFG-YLADRYNRKRVIAVGIFIWTLAVFASGFSN---HFWQVLLCRGFVGI 133 (493)
T ss_pred HHHHhcCCCchhccchhHHHHHHHHHHHHHHH-HHHhhcCcceEEeeHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcc
Confidence 34556789999999999999999999999999 999999999999988887777776665554 67777777777766
Q ss_pred ccc
Q 047440 614 FAE 616 (619)
Q Consensus 614 g~~ 616 (619)
|-+
T Consensus 134 GeA 136 (493)
T KOG1330|consen 134 GEA 136 (493)
T ss_pred chh
Confidence 643
No 280
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=2.5 Score=43.73 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=67.3
Q ss_pred hhHHhhhcchhhHHhccCchhhHHH-----HHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 047440 5 GKKLKERQIQEWQSYYINYKLMKKK-----VKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIV---LFLLEQQGLLASR 76 (619)
Q Consensus 5 g~~l~~~~~~ew~~~yi~Y~~lKk~-----i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~---~f~~~~~~~~~~~ 76 (619)
|.+|-...+.-.+++||.|..|=|. ++++....++. -.=...++.|.++|. .|-.++.+|+.+|
T Consensus 560 ~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~Q--------lQ~l~~~~eer~~i~e~a~~La~R~eea~e~ 631 (741)
T KOG4460|consen 560 CLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQ--------LQDLSYCREERKSLREMAERLADRYEEAKEK 631 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566777899999999766432 22222111111 111234455555554 4566677777777
Q ss_pred HHHHHHHHHHHhcCC------ChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047440 77 LARLREQHDALLQQP------DISQMTELREAYRAAGMDLLKLLFFVEINAIGLRK 126 (619)
Q Consensus 77 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~K 126 (619)
=+.|++..+.+.+.. ......++++.+..+..+++.|.+=.+.=..-|-|
T Consensus 632 qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 632 QEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665432 23445677778878888888888766554433333
No 281
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=93.07 E-value=0.073 Score=45.56 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 551 ACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 551 ~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+..+++..++..+.+ ++.||+|+|+.+..+..+.+++.++.....
T Consensus 5 ~~~~~~~~~~~~~~g-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 49 (141)
T TIGR00880 5 AGYALGQLIYSPLSG-LLTDRFGRKPVLLVGLFIFVLSTAMFALSS 49 (141)
T ss_pred EeehhHHHHHHhhHH-HHHhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777888888 999999999999888877777766655443
No 282
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=92.86 E-value=0.29 Score=51.37 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhchhhhhhh-cccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccch-HHHHHHHHHHHHH
Q 047440 510 VKVQLLIYFMLKYVMEILLSESSVVTTY-YFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFED-RQILLASEIMVCI 587 (619)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~-r~~l~~~~~~~~i 587 (619)
++...+..++.......+....-+|+++ ..+-+....|++.+...++.++.++..| +...|.+. |+.++.|.+++++
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~-~Ws~k~~~~k~Pli~s~ii~~~ 114 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFG-IWSNKTGSVKKPLIVSFLIAII 114 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhc-ccccccCCcccCHHHHHHHHHH
Confidence 3344444444444444444444455555 2355667779999999999999999999 88888775 6777889999998
Q ss_pred HHHhhc-cccccc-chhHHHHHHHHhhhccc
Q 047440 588 GILFSF-HVFIPY-SVPQYVCSGLVLFVFAE 616 (619)
Q Consensus 588 ~~~~~~-~~~~~~-~~~~~i~~~~~~~~g~~ 616 (619)
|.++.. ....+. ..+.+.++-++.++|.+
T Consensus 115 g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~ 145 (488)
T KOG2325|consen 115 GNLLYLALAYVPNGVKYLMLVARILTGVGVG 145 (488)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHcCcCcc
Confidence 888763 222222 44556666666666643
No 283
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=92.73 E-value=0.39 Score=46.08 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=51.4
Q ss_pred hhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcc
Q 047440 531 SSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFH 594 (619)
Q Consensus 531 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~ 594 (619)
+..-+++.+|+|..+...+.....++..+ +++.| .+.|++|++.++.+|.+...+|..++..
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G-~l~d~~gp~~~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAG-LLYDRFGPWVVLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999988888888765 56667 9999999999999999999999877653
No 284
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=92.41 E-value=1.6 Score=45.90 Aligned_cols=110 Identities=21% Similarity=0.134 Sum_probs=73.4
Q ss_pred hhHHHhhHHHHHHHHhhhhhhhccccCch--hHHHHHHH--HHHHH-HHHHHhh------ccCcHHHHHHHHHHhhccCc
Q 047440 285 CGIVIGAMAIAQVFSSVYFSAWSNRSYFK--PLVFSSIV--LFIGN-VMYALAY------DFSSIAVLLIGRLFCGFGSA 353 (619)
Q Consensus 285 ~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr--~~~~~~~~--~~i~~-~l~~~~~------~~~~~~~l~~~r~l~G~~~~ 353 (619)
.-.+..++.+|-.+|..+..+.. ..++| .+.+.+++ +++-. ++|..-+ ..++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 35667778888888888665432 12223 44444443 22222 2222111 11466777777899999999
Q ss_pred c--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 354 R--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 354 ~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
- +.+..+..+.+++++|..+..+...+..+|..+|..++-.+
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 77778888889999999998888888888888888776544
No 285
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=91.76 E-value=8.4 Score=33.67 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 64 LFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 64 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
.+......|+.++++.+..+++++...+.....+.+...=.++..-+..+-.++.+|..++.|-++-|-+..
T Consensus 81 ~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~ 152 (165)
T PF09602_consen 81 NSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLDAYVEQA 152 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888888888888887765555555555554455566678888999999999999999887665
No 286
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.23 E-value=8.1 Score=38.44 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=57.5
Q ss_pred HHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHH----HHHHHHH--HHHHHHHHhhc-cCcHHHHHHHH
Q 047440 274 YSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLV----FSSIVLF--IGNVMYALAYD-FSSIAVLLIGR 345 (619)
Q Consensus 274 ~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~----~~~~~~~--i~~~l~~~~~~-~~~~~~l~~~r 345 (619)
+... +|-+-.+.+++.+.|..++.+|+...-++.|.--.-+.+ +.+++.. +..+-..|+.. .++.+.++++-
T Consensus 33 LatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt 112 (508)
T COG4262 33 LATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALT 112 (508)
T ss_pred HHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHH
Confidence 3444 466778899999999999999999988888763322222 2233321 12222233321 14677888888
Q ss_pred HHhhccCcc--hhhhhhhhc
Q 047440 346 LFCGFGSAR--AVNRRYISD 363 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~ 363 (619)
++.|.-.|. |..+.++..
T Consensus 113 ~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 113 AVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHhcchHHHHHHHHH
Confidence 999988888 777666654
No 287
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=89.69 E-value=0.83 Score=50.65 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=53.7
Q ss_pred HHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHHhhccc
Q 047440 524 MEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNM-FEDRQILLASEIMVCIGILFSFHV 595 (619)
Q Consensus 524 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~-~g~r~~l~~~~~~~~i~~~~~~~~ 595 (619)
++++...+..|+...+|++...+..++.......-+..++.| +++|+ +|+++.+.++.++..+|.+++...
T Consensus 3 yYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg-~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 3 YYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGA-IIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred eeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 345556667777777899988887777776666666666666 88885 799999999999988888776543
No 288
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=88.97 E-value=4.2 Score=41.67 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=82.4
Q ss_pred hHhhccChHHHHHHhC---C-ccchhhHHHhh-HHHHHHHHhhhhhhhccccCchhHHHHHHH--HHHHHHHHHH----h
Q 047440 264 TYIIVPTADDYSMSLG---A-AATVCGIVIGA-MAIAQVFSSVYFSAWSNRSYFKPLVFSSIV--LFIGNVMYAL----A 332 (619)
Q Consensus 264 ~~~~~~~~~~~~~~~g---~-s~~~~g~~~s~-~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~--~~i~~~l~~~----~ 332 (619)
+.+...+.|.+..+-. . +....-++..+ +.+..++|.+.+.++-+.- ||.+.+..++ +.+-.+.+.- .
T Consensus 259 y~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~ 337 (406)
T KOG1479|consen 259 YFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLP 337 (406)
T ss_pred eeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCC
Confidence 3344456677766532 2 23334455555 8888889977777776553 4554444443 2222222111 0
Q ss_pred hccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhh
Q 047440 333 YDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAG 393 (619)
Q Consensus 333 ~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~ 393 (619)
....+-+++++.-.+.|+..|- .....+..+.+|++++-.+-.+.......|...|..++.
T Consensus 338 v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 338 VVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred ceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1126677888888999999998 777888888999988887777777777777777766653
No 289
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=88.37 E-value=1.9 Score=41.07 Aligned_cols=56 Identities=11% Similarity=-0.093 Sum_probs=26.8
Q ss_pred chhhhHhHHHHHHHHHHhHHHHHH--hh-hhhccccccceeccccchhHHHHHHHHHHHHHHHhh
Q 047440 368 KIRMQASAGFVSASALGMACGPAL--AG-LLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCI 429 (619)
Q Consensus 368 ~~r~~~~~~~~~~~~~G~~~g~~i--~~-~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~ 429 (619)
++|+....+...+.++|.++..+. .+ -.... ....|+| .+.+.+++.++.+++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~-~~~~W~~-----I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIA-LTNNWQW-----ILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 345555556666677776654332 22 11111 1124666 555655555444444333
No 290
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=86.83 E-value=1 Score=46.41 Aligned_cols=111 Identities=13% Similarity=-0.034 Sum_probs=67.9
Q ss_pred HHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhc
Q 047440 287 IVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-LFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISD 363 (619)
Q Consensus 287 ~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~ 363 (619)
|-..++.+...+.+....++.+|+|-|++++.+.. +.++..+.++. .+.+....-+-..|+-.+. .+..+.++.
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~---~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~ 412 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLV---LNTYVVLSHRSTAGILSSPLLTVPYGALAL 412 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhh---hhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence 44556677778889999999999996665555554 44666666666 6666666667677744333 211111111
Q ss_pred ---------------------cCc--cchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 364 ---------------------CVP--LKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 364 ---------------------~~~--~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
... ...+|...|+.++...+..++..+..|.+.+..|
T Consensus 413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 011 1234566677788888887777776677655443
No 291
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=85.77 E-value=6.3 Score=38.60 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=82.3
Q ss_pred hhHHHhhHHHHHHHHhhhhhhhcccc--CchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhh
Q 047440 285 CGIVIGAMAIAQVFSSVYFSAWSNRS--YFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRY 360 (619)
Q Consensus 285 ~g~~~s~~~~~~~i~~~~~G~l~Dr~--Grr~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~ 360 (619)
.|.+.-+-.+..++..+.+..+.||+ |.|.. +..++-+.+.++.+++ .+.++-+++-.+..++.|. ....++
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~-~~v~~sa~s~~lVafs---~s~~~sL~GV~~aSissGlGEiTFL~l 139 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIA-LVVLLSALSFFLVAFS---NSVPMSLLGVVFASISSGLGEITFLAL 139 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHH-HHHHHHhcceEEEEec---cchhHHHhhhhhhhhcCCcceeehhhh
Confidence 56666666777788888888889984 44432 2222333666777777 8899988888888888877 333333
Q ss_pred hhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCch
Q 047440 361 ISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 361 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
+..+++ ..++.++.+.+.++++|..--..+.+..+ ...+.+.++...+.++.....++.+++++.
T Consensus 140 -ss~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~------~spk~Tlli~l~lP~lfa~~yf~lL~~pes 204 (409)
T KOG3880|consen 140 -SSRYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWAN------LSPKSTLLIMLFLPALFAFAYFFLLKSPES 204 (409)
T ss_pred -hccCCC----ceeccccCCCCcchhhhhhHHHHHhhhcC------CChhhHHHHHHHHHHHHHHHHHheeCCCcc
Confidence 333332 33444555555566666655555533111 113456677777766666666666666543
No 292
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.24 E-value=24 Score=39.63 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047440 70 QGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (619)
.+++.+|++.+...++. ..+.-.+..+++++.+..+..+++.|+
T Consensus 609 Qe~L~~R~~~vl~~l~~-~~P~LS~AEr~~~~EL~~~~~~l~~l~ 652 (717)
T PF10168_consen 609 QEKLMKRVDRVLQLLNS-QLPVLSEAEREFKKELERMKDQLQDLK 652 (717)
T ss_pred HHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444322 122234445677777777777776665
No 293
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=82.11 E-value=0.43 Score=51.73 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 522 YVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
....++......-++.+|+++..++|++.+..-++.++..+++. ++..|..|-+.+.+|.++++++.+++..++
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vs-y~g~~~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVS-YFGGRGHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence 55555655556677888999999999999999999999999888 888887777788889999999988876543
No 294
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.54 E-value=36 Score=32.16 Aligned_cols=93 Identities=9% Similarity=0.021 Sum_probs=59.1
Q ss_pred hhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC
Q 047440 15 EWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFL---LEQQGLLASRLARLREQHDALLQQP 91 (619)
Q Consensus 15 ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~---~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (619)
+=+.+=.+|.++|-.|.+.... .+.++.|...+..|.+.++.=+ .+...+++..++.++..+++..+
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~--------~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~-- 74 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVES--------LENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAES-- 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445556677777666654331 1123578888888888877544 44444556777777777766433
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 047440 92 DISQMTELREAYRAAGMDLLKLLFFVEIN 120 (619)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~lN 120 (619)
.....++.+..+|.++..|+..++-.
T Consensus 75 ---er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 75 ---ERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888876643
No 295
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=80.30 E-value=13 Score=32.81 Aligned_cols=62 Identities=15% Similarity=-0.046 Sum_probs=39.9
Q ss_pred HHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhhcccc
Q 047440 551 ACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEV 617 (619)
Q Consensus 551 ~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~ 617 (619)
++......+..++.+ .+.+++|.|..+++|.+..++-...... + +.+.++.+.++.++|.++
T Consensus 44 ai~Y~~~~~s~l~~P-~iv~~lg~K~sm~lg~~~y~~y~~~~~~-~---~~~~l~~~s~l~G~~~a~ 105 (156)
T PF05978_consen 44 AILYGSFAISCLFAP-SIVNKLGPKWSMILGSLGYAIYIASFFY-P---NSYTLYPASALLGFGAAL 105 (156)
T ss_pred HHHHHHHHHHHHhHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHh-h---hHHHHHHHHHHHhhhhHH
Confidence 344444455566655 7899999999999888777755444333 3 345556666666666554
No 296
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=79.91 E-value=21 Score=32.99 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCccchH
Q 047440 102 AYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDY 142 (619)
Q Consensus 102 ~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~~~~~~ 142 (619)
.+.+==+++...++|..-=.-+..|++.||....+.+.++.
T Consensus 116 ~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~ 156 (199)
T PF10112_consen 116 YVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSE 156 (199)
T ss_pred HHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCh
Confidence 33333466788899988889999999999998776555444
No 297
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=79.74 E-value=0.61 Score=46.74 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=3.3
Q ss_pred HHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHH--HHHHH-HHHHHhh-------ccCcHHHHHHHHHHhhccCcc-
Q 047440 287 IVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIV--LFIGN-VMYALAY-------DFSSIAVLLIGRLFCGFGSAR- 354 (619)
Q Consensus 287 ~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~--~~i~~-~l~~~~~-------~~~~~~~l~~~r~l~G~~~~~- 354 (619)
.+..++.++-.+|..+.++.--+ ..+|++++.++. +++-. ++|...+ ..++-+..++.-++.|+..|-
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888889998887764311 134555544443 22222 2221110 114556777788899999988
Q ss_pred -hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhh
Q 047440 355 -AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGL 394 (619)
Q Consensus 355 -~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~ 394 (619)
+.+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999999999888888888888888877766543
No 298
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=78.80 E-value=13 Score=38.36 Aligned_cols=95 Identities=7% Similarity=-0.132 Sum_probs=64.3
Q ss_pred ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH---HHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc--h
Q 047440 281 AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV---LFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--A 355 (619)
Q Consensus 281 s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~---~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~ 355 (619)
....-|.+-++..+..+++++..|++..++.+..-+..+.+ .+...++++.. ++.|..+++.++.+..... +
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t---~~Iwv~Y~~yIif~~~y~fliT 359 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT---GNIWVCYAGYIIFRSLYMFLIT 359 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888999999999999999777777654443333 22455555666 8999999998887766544 5
Q ss_pred hhhhhhhccCccchhhhHhHHHH
Q 047440 356 VNRRYISDCVPLKIRMQASAGFV 378 (619)
Q Consensus 356 ~~~~~i~~~~~~~~r~~~~~~~~ 378 (619)
++..-++.....+.-|..+|+..
T Consensus 360 iA~~qIA~~l~~e~yaLVFGiNt 382 (412)
T PF01770_consen 360 IASFQIAKNLSEERYALVFGINT 382 (412)
T ss_pred HHHHHHHHhccccceeeeeeeHH
Confidence 55555666555555555555443
No 299
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=77.23 E-value=34 Score=34.75 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHhCCc-cchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H----
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSLGAA-ATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-I---- 324 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i---- 324 (619)
+.+.++.++...+.-+.......++..++-+ -...+.-..+-....++..++.|...|+..|++++-..+++- +
T Consensus 30 i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~v 109 (503)
T KOG2601|consen 30 IFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIV 109 (503)
T ss_pred ehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHH
Confidence 4555666666666666666666777776543 333333333344556778888999999999999886655432 2
Q ss_pred --HHHHHHHhhc---cCcHHHHHHHHHHhhccCcc----hhhhhhh--hccC----ccchhhhH---hHHHHHHHHHHhH
Q 047440 325 --GNVMYALAYD---FSSIAVLLIGRLFCGFGSAR----AVNRRYI--SDCV----PLKIRMQA---SAGFVSASALGMA 386 (619)
Q Consensus 325 --~~~l~~~~~~---~~~~~~l~~~r~l~G~~~~~----~~~~~~i--~~~~----~~~~r~~~---~~~~~~~~~~G~~ 386 (619)
+.++..+... ..++..+..+-++.-...+. ..+.+++ -||+ ..+.+... .+.....-..-.+
T Consensus 110 agglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~ 189 (503)
T KOG2601|consen 110 AGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNL 189 (503)
T ss_pred HHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhhhc
Confidence 2222222211 12444444444333222222 1111111 2222 22333333 3555555556678
Q ss_pred HHHHHhhhhhccc
Q 047440 387 CGPALAGLLQTNF 399 (619)
Q Consensus 387 ~g~~i~~~l~~~~ 399 (619)
+.|++.|.+....
T Consensus 190 Lapv~tg~Iitfv 202 (503)
T KOG2601|consen 190 LAPVITGLIITFV 202 (503)
T ss_pred hhhhhhcccceee
Confidence 8888888885433
No 300
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.99 E-value=20 Score=38.20 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCC
Q 047440 96 MTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGY 137 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~ 137 (619)
...+++.+..+..++..|-. |...+..=+++|+|.+.-
T Consensus 351 i~~mReec~~l~~Elq~LlD----~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 351 IAKMREECQQLSVELQKLLD----TKISLDAEIAAYRKLLEG 388 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhc----hHhHHHhHHHHHHHHhcc
Confidence 44555555555555555543 677899999999999833
No 301
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=76.25 E-value=30 Score=28.85 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHh
Q 047440 91 PDISQMTELREAYRAAGMDLLKLLF 115 (619)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (619)
++.++...|.+.+.++...+..|++
T Consensus 93 ~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 93 PSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677888888899888888887763
No 302
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=75.79 E-value=1.5e+02 Score=33.68 Aligned_cols=6 Identities=0% Similarity=-0.280 Sum_probs=2.5
Q ss_pred hhhhcc
Q 047440 567 YISNMF 572 (619)
Q Consensus 567 ~l~d~~ 572 (619)
++..+.
T Consensus 228 ~Ll~~l 233 (810)
T TIGR00844 228 KAIRFA 233 (810)
T ss_pred HHHHHH
Confidence 444433
No 303
>PRK11020 hypothetical protein; Provisional
Probab=75.69 E-value=33 Score=27.80 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047440 69 QQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVE 118 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (619)
....+++|++.|+.++.....+.+.+....+.+.+..+..++..|+.=+.
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999999998888888888888999999999999888876543
No 304
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=74.14 E-value=9.7 Score=37.37 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=67.6
Q ss_pred chhhHHHhhHHHHHHHHhhhhhhhccccCchhHH-HHHHH------HHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc-
Q 047440 283 TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLV-FSSIV------LFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR- 354 (619)
Q Consensus 283 ~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~-~~~~~------~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~- 354 (619)
++.-|....|.+|-+++ +=+-++=+-+.+ ..+++ +++.-....+. +++|..++.-+.-|+-+|.
T Consensus 288 sqYRwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ft---psi~ivf~lI~~EGLlGGas 359 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFT---PSIWIVFALILFEGLLGGAS 359 (409)
T ss_pred hcchhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhcCchH
Confidence 45678888887765433 222222222322 22221 11233333344 8999999998999998777
Q ss_pred -hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 355 -AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 355 -~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
....--+.+-.++++|-.+|+...++-++|..++.+++-.+
T Consensus 360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 55555566667889999999999998888888877766554
No 305
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=72.53 E-value=88 Score=30.59 Aligned_cols=40 Identities=25% Similarity=0.116 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 96 MTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
...|...+..+-.-+.--..|-+.=..|+.+|.||+||.-
T Consensus 114 ~q~L~~~~~n~~~~~~~~~~~~~~V~~~~~~l~~~~d~~~ 153 (289)
T PF05149_consen 114 KQRLRRCEENCDRALSCAESLEEYVQEGCPKLPKKHDKAQ 153 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555566666789999999999986
No 306
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=71.87 E-value=61 Score=32.29 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=25.7
Q ss_pred CchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 22 NYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 22 ~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
=|+.||++............+++....+.|.+.+.+--++ .++.++++..+-+++++.++
T Consensus 34 l~~~L~~l~~~~~~~d~~~~~~~~~~~~~FL~~Fp~~k~~--------Le~~I~kL~~lAd~idk~Hk 93 (313)
T PF05461_consen 34 LREALKELTEDMDSEDKDRSQKDQQDRERFLKEFPQLKEE--------LEEHIRKLRALADEIDKVHK 93 (313)
T ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3566666655443322222222222335555444332222 33344445555555554443
No 307
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=71.80 E-value=6.6 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.566 Sum_probs=21.2
Q ss_pred cchhhHHhccCchhhHHHHHHhhh
Q 047440 12 QIQEWQSYYINYKLMKKKVKQYAQ 35 (619)
Q Consensus 12 ~~~ew~~~yi~Y~~lKk~i~~~~~ 35 (619)
+...|+-.+..|..||..|..+..
T Consensus 3 sL~hWq~w~aEYe~LKEEi~~l~~ 26 (99)
T PF13758_consen 3 SLYHWQTWEAEYEGLKEEIEALPE 26 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Confidence 456899999999999999999865
No 308
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=71.32 E-value=20 Score=31.79 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 69 QQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
++.+++..+.++.++.+....+.+=....++++.+..+..|+..+++=..-....+.+++++....+
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVL 107 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665444444556789999999999999999999999999999999887665
No 309
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=70.89 E-value=30 Score=33.35 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=33.2
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Q 047440 544 GAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIG 588 (619)
Q Consensus 544 ~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~ 588 (619)
...++..+...+...++..+.| .+.|+.|+|+.+..+.....++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~ 82 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAG-PLGDRYGRRKVLIIGLLLFLLG 82 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hccccccchHHHHHHHHHHHHH
Confidence 4677888887888877777777 9999999997777776544444
No 310
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=70.52 E-value=70 Score=29.09 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 047440 52 SRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKF 131 (619)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~ 131 (619)
-.....|-.||..+|..|+++...+=+--... +.+..+.+....=.+.+.+++.+...--+=+..|.....++||+.
T Consensus 41 ~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~---~lN~~RlKvL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~L 117 (220)
T KOG1664|consen 41 GRLVQEQRLKIMQYYEKKEKQVELQKKIAKSN---LLNQSRLKVLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDL 117 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 45789999999999998877665331111110 111011111222223445555555544444556666666666643
No 311
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.93 E-value=41 Score=28.30 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQP--DISQMTELREAYRAAGMDLLKL 113 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l 113 (619)
..++-..+..++++|..=.....+++..|++.+..++++..+-. -.++...+++.+.++..|+..+
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46678888999999999999999999999999999888754311 1222334444444444444443
No 312
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=68.86 E-value=1.2e+02 Score=29.80 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccc---cCchhH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR---SYFKPL 315 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr---~Grr~~ 315 (619)
+++.+++++.-+..+..+..+..+.+..+......+++.+...+. +...-.++ ||.++.
T Consensus 28 ~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~------~a~r~~~~~~TfGy~R~ 89 (296)
T COG1230 28 LLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIK------LARRPATKRFTFGYKRL 89 (296)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHH------HhcCCCCCCCCccHhHH
Confidence 333344444444556666666777777777666666554433332 23333333 787774
No 313
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=68.31 E-value=1.3e+02 Score=32.93 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=7.4
Q ss_pred chhHHHHHHHhhhhH
Q 047440 543 TGAVAIFLACLGLTV 557 (619)
Q Consensus 543 ~~~~g~~~~~~~~~~ 557 (619)
....++.+.+++++.
T Consensus 324 ~~~g~~~l~~~gLG~ 338 (571)
T PRK00293 324 LLLGGLTLYLLALGM 338 (571)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555555555
No 314
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.57 E-value=45 Score=33.93 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=15.4
Q ss_pred hhhHHhccCchhhHHHHHHhh
Q 047440 14 QEWQSYYINYKLMKKKVKQYA 34 (619)
Q Consensus 14 ~ew~~~yi~Y~~lKk~i~~~~ 34 (619)
.+||.|+=.=+++++.|+...
T Consensus 216 kDWR~hleqm~~~~~~I~~~~ 236 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESAL 236 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 678888777777777777654
No 315
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.50 E-value=19 Score=40.18 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHH-HHHHHhhhhhhhccccC
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAI-AQVFSSVYFSAWSNRSY 311 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~-~~~i~~~~~G~l~Dr~G 311 (619)
+..++..++..+.......+..++|-|++. ||.+++.+..+++...+ +.++|.+++|++..|+-
T Consensus 392 ~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 392 PIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred chHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 344555666667777777888899999985 99999999998866666 45678888999999864
No 316
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=67.33 E-value=1e+02 Score=32.10 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKIL 128 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIl 128 (619)
..+...-..+++...+=-..+..++++-++.|.+++.+..-++.......+.+.+..+..+|..++.|..-=.-...||-
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 55666666666666666666777777777777777777666788889999999999999999999999887777777776
Q ss_pred Hh
Q 047440 129 KK 130 (619)
Q Consensus 129 KK 130 (619)
-+
T Consensus 281 E~ 282 (424)
T PF03915_consen 281 ES 282 (424)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 317
>PRK11469 hypothetical protein; Provisional
Probab=66.44 E-value=1.1e+02 Score=28.08 Aligned_cols=53 Identities=19% Similarity=0.418 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhh
Q 047440 540 GWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFS 592 (619)
Q Consensus 540 g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~ 592 (619)
|.+.........+........+...|.++.++++++.-++.|.++..+++-++
T Consensus 130 g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il 182 (188)
T PRK11469 130 QVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQIL 182 (188)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555666666666667566677888888888888888887654
No 318
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=65.85 E-value=3.9 Score=39.13 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=40.4
Q ss_pred hhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Q 047440 532 SVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGI 589 (619)
Q Consensus 532 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~ 589 (619)
.+|+.+.+|+...++|.++.......++.+.++| -++||.||++..+.-++...+++
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivg-SLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVG-SLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHH-HHHhhhccccceeeehHHHHHHH
Confidence 3566677899999999887765555666677777 89999999987554444444433
No 319
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=65.47 E-value=77 Score=28.20 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKL 113 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (619)
+.=|..|.++++.+ ..|+.+.+++++++++.+.+ -......|+.....+..+|...
T Consensus 108 ~~tf~rL~~~Vd~~-------~~eL~~eI~~L~~~i~~le~--~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 108 SSTFARLCQQVDQT-------KNELEDEIKQLEKEIQRLEE--IQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp --HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666553 44455555555554444322 0112345555555555555443
No 320
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=65.12 E-value=39 Score=26.10 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 53 RMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
+.++.|++|.. .|..+++.|++.|+++..+..+
T Consensus 4 eKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 4 EKIRAEIEKTK----EKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888865 6889999999999999887544
No 321
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.97 E-value=57 Score=33.53 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 55 LDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 55 l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
|..++.+=..|+.+...|-.-|.+.||++++++.+
T Consensus 238 Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 238 LKEQYQREYQFILEALQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334333456677777777777777777776544
No 322
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.47 E-value=1.2e+02 Score=31.30 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKIL 128 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIl 128 (619)
..|...-..+|+...+=...+..++++-++.+++++.+..-++.....+.+.+.+.....+|..++.|..--.-=-.||-
T Consensus 205 R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiW 284 (426)
T smart00806 205 RAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIW 284 (426)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 44555555566555555556677777777777777777666688888999999999999999999999865555555554
No 323
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=63.73 E-value=14 Score=32.26 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHhhccCcchhhhhhhhccCccchhhhHhHHHHHHHHHHhHH
Q 047440 337 SIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMAC 387 (619)
Q Consensus 337 ~~~~l~~~r~l~G~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 387 (619)
++..+++.-++.|+|.- .+.+..++-.+++++-|..+|+-.+-.+++.+.
T Consensus 96 ~~~~~~~S~~~Fg~gll-GisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 96 PWAVLLVSLVFFGLGLL-GISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred chHHHHHHHHHHHHHHH-hhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 33344444444343321 456677777888888999999988877776554
No 324
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.69 E-value=49 Score=26.99 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047440 69 QQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLF 115 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (619)
+..+..+|+..+|.+++.+ |+.++...++..+.++..++..+..
T Consensus 43 ~~~~~~~Rl~~lE~~l~~L---Pt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHL---PTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445678888888887775 6777888888888888888877654
No 325
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=62.85 E-value=97 Score=31.37 Aligned_cols=139 Identities=8% Similarity=-0.074 Sum_probs=82.1
Q ss_pred hHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH-HH--HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhh
Q 047440 286 GIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV-LF--IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRY 360 (619)
Q Consensus 286 g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~-~~--i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~ 360 (619)
|..-++..+..+++.+..|.+--++.|+.-++.++. .. ...+++... +++|..+++.++.+..... +++..-
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t---~~Iw~~Ya~yvlfr~~y~l~itiA~~~ 350 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT---QHIWVCYAGYVLFRVIYQLTITIATFQ 350 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc---cceehhhhhHHHHHhhHhhhhhHHHHH
Confidence 556666777788899999999888877753333332 22 233334444 8899998888888776665 667777
Q ss_pred hhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc--c-cceeccccchhHHHHHHHHHHHHHHHhhh
Q 047440 361 ISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK--I-YKLTFNQNTLPGWIMAVAWLFYLVWLCIS 430 (619)
Q Consensus 361 i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~--~-~~w~w~~~~~~~~~~~~~~~~~~~~~~~~ 430 (619)
++.....+.-|..+|+.... +-++=.++.....+.-| . ..-++..|..-|.+.+++.++...+.+..
T Consensus 351 iA~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 351 IARNLSSELFGLVFGINTFV---ALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred HHHhhhhhhheeeeehHHHH---HHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 77777777777777765432 22333333333333111 0 01122224455677777766665554444
No 326
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.32 E-value=1.5e+02 Score=29.97 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 047440 94 SQMTELREAYRAAGMDLLKLLFFVEINAIGLRKI 127 (619)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KI 127 (619)
.+.+++.+....+...+++++++++.-....+++
T Consensus 377 se~d~v~k~~~~l~~qiremkq~v~~t~ni~~~~ 410 (497)
T KOG3838|consen 377 SENDDVAKVQALLLGQIREMKQLVEMTDNIVRMA 410 (497)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677788899999999999997776666665
No 327
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.24 E-value=58 Score=29.89 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHHHHHHhH
Q 047440 69 QQGLLASRLARLREQHDALLQQ--PDISQMTELREAYRAAGMDLLKLLFF 116 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 116 (619)
++.+.++|++.++...+++.+. .......+|++.+.++...+.....+
T Consensus 164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~ 213 (290)
T COG4026 164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEE 213 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHH
Confidence 4455566666666555544331 11223445555555555554444444
No 328
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=61.23 E-value=1.4e+02 Score=29.70 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047440 58 QIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLF 115 (619)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (619)
|..|+..=+....-++..+...+.+..-....-+...+.+++-+++.++-++++.|++
T Consensus 253 efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k 310 (320)
T TIGR01834 253 ENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKK 310 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444443434446677777888888888888877764
No 329
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=60.36 E-value=71 Score=32.74 Aligned_cols=139 Identities=11% Similarity=0.054 Sum_probs=77.1
Q ss_pred HHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHH--HHHHHHHHH-----HHHHHH
Q 047440 259 LYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLV--FSSIVLFIG-----NVMYAL 331 (619)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~--~~~~~~~i~-----~~l~~~ 331 (619)
..=+++...-...+.-.-|.|++....+++.-...-.+++++...|.++. |.||+. .-++-.-++ .++...
T Consensus 276 t~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~pl~~~lka~~~R~~~~~~~t~Lv~~ 353 (510)
T KOG3574|consen 276 TGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTA--GPRPLNVFLKAVPYRLGGGLVQTALVWW 353 (510)
T ss_pred HHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecC--CCCcchHHHHhhhHHHHHHHHHHHHHhh
Confidence 33344445555566677889999998888763333334444444444433 344433 112211011 111111
Q ss_pred hhc--------cCcHHH-HHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 332 AYD--------FSSIAV-LLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 332 ~~~--------~~~~~~-l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
.+. ...++. ++....+.+..... ...++..+.+.+|..-|+.|.+.+...++|.-.-..+..++.+.+
T Consensus 354 ~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 354 TPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred hcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 100 012222 22334444443333 677888999999999999999999998888766666666665543
No 330
>PRK11546 zraP zinc resistance protein; Provisional
Probab=59.53 E-value=1e+02 Score=26.56 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChhHHHHHHHHHHHHHHHHHHHH
Q 047440 57 NQIEKIVLFLLEQQGLLASRLARLREQHDALLQQ--PDISQMTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 114 (619)
.++++|.+=|..+..++++.+..-+.+++.+... +|.+....+.+++.++...|.+++
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777778899999999888888886553 455557777777777777666554
No 331
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=59.41 E-value=41 Score=33.10 Aligned_cols=24 Identities=4% Similarity=-0.244 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCch
Q 047440 413 GWIMAVAWLFYLVWLCISFKEPSR 436 (619)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~pe~~~ 436 (619)
+.+.++...+..++.+.+.|..|.
T Consensus 78 ~~~Gglwy~~lsl~~~~l~p~r~~ 101 (284)
T PF12805_consen 78 FLAGGLWYLLLSLLWWPLRPYRPV 101 (284)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444445555555666667777665
No 332
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=58.72 E-value=62 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=25.7
Q ss_pred hhhhhccccC----chhHHHHHHHH-HHHHHHHHHhhccCcHHHHHHHHHHhhccCc
Q 047440 302 YFSAWSNRSY----FKPLVFSSIVL-FIGNVMYALAYDFSSIAVLLIGRLFCGFGSA 353 (619)
Q Consensus 302 ~~G~l~Dr~G----rr~~~~~~~~~-~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~ 353 (619)
+++.++|.=| |.+-+++++++ +++.+...+. .+..|.+..+-++.+++.+
T Consensus 42 ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll--~~~p~lf~~~l~~~tf~~~ 96 (704)
T TIGR01666 42 IAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL--FGKPWLFAVGLTVSTFGFI 96 (704)
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHH
Confidence 3456777643 44444444443 3555444443 1555666666666655444
No 333
>COG1971 Predicted membrane protein [Function unknown]
Probab=58.61 E-value=1.4e+02 Score=27.06 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=30.9
Q ss_pred cchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 542 STGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 542 s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
+.........+........+..+|..+...+|.+.-++.|.++..++.-.+.
T Consensus 134 ~i~~~av~iG~~T~il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~iL~ 185 (190)
T COG1971 134 NILLAAVAIGLITLILSALGAIIGRKLGKFLGKYAEILGGIILIGIGVKILL 185 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333334444334444444444554666777888888888888888775543
No 334
>PHA02675 ORF104 fusion protein; Provisional
Probab=57.91 E-value=81 Score=23.95 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCc
Q 047440 102 AYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYR 138 (619)
Q Consensus 102 ~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~~ 138 (619)
.+.....-|..|++-.+-=..++-++-||-|=.||.+
T Consensus 52 cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDVQTG~~ 88 (90)
T PHA02675 52 CCRETGARLDRLERHLETLREALLKLNTKIDVQTGYS 88 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecccc
Confidence 3334444445555555555556777788888777653
No 335
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=56.79 E-value=1.1e+02 Score=24.89 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=41.2
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 544 GAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 544 ~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
...|-.++..+-+-++.+++.+ +..|+..+-+.=.+|..++.++..++.+.|
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~-w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWG-WLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHH-hhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 4567788888888888999999 999998777776778888888877666544
No 336
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=56.43 E-value=56 Score=36.79 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=26.4
Q ss_pred hhhhhhhccccC----chhHHHHHHH-HHHHHHHHHHhhccCcHHHHHHHHHHhhccCc
Q 047440 300 SVYFSAWSNRSY----FKPLVFSSIV-LFIGNVMYALAYDFSSIAVLLIGRLFCGFGSA 353 (619)
Q Consensus 300 ~~~~G~l~Dr~G----rr~~~~~~~~-~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~ 353 (619)
+.+++.++|.-| |.+-++++++ ++++.+...+. .+..|.+.++-++.+++.+
T Consensus 40 G~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll--~~~p~~~~~~l~~~tf~~~ 96 (701)
T TIGR01667 40 GIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLL--FPKPWLFPFLLTLLTFGFI 96 (701)
T ss_pred hhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHH
Confidence 344555777644 3444444444 44555555444 1455555555555555443
No 337
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=56.20 E-value=1.5e+02 Score=29.25 Aligned_cols=47 Identities=17% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047440 69 QQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLF 115 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (619)
..-++..+.+.+.+..-+...-+...+.+.+-+.++++-++++.|++
T Consensus 247 a~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 247 ALMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALKR 293 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444444444444457788889999999999999998874
No 338
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=56.04 E-value=1.1e+02 Score=24.77 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=46.5
Q ss_pred CchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 047440 22 NYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELRE 101 (619)
Q Consensus 22 ~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (619)
-|.+++|++++.....+-..++ -.+|.+.|-+|.++-. -+-.+.+.++++.+.+++.- ...+....+.+
T Consensus 22 ~~ek~~klvDelVkkGeln~eE----ak~~vddl~~q~k~~~---~e~e~K~~r~i~~ml~~~~~----~r~~~~~~l~~ 90 (108)
T COG3937 22 TAEKVQKLVDELVKKGELNAEE----AKRFVDDLLRQAKEAQ---GELEEKIPRKIEEMLSDLEV----ARQSEMDELTE 90 (108)
T ss_pred HHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHHHHh---hhHHHhhhHHHHHHHhhccc----cccchHHHHHH
Confidence 3677788888776544333322 2678888888877311 11122344555555544441 22344556666
Q ss_pred HHHHHHHHHHHHHh
Q 047440 102 AYRAAGMDLLKLLF 115 (619)
Q Consensus 102 ~~~~~~~~~~~l~~ 115 (619)
.+.++-+++..|++
T Consensus 91 rvd~Lerqv~~Len 104 (108)
T COG3937 91 RVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666654
No 339
>PRK10263 DNA translocase FtsK; Provisional
Probab=55.93 E-value=26 Score=41.42 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=5.4
Q ss_pred HhHHHHHHhhhh
Q 047440 384 GMACGPALAGLL 395 (619)
Q Consensus 384 G~~~g~~i~~~l 395 (619)
|+++|.+++.++
T Consensus 143 GGIIG~lLs~lL 154 (1355)
T PRK10263 143 GGVIGSLLSTTL 154 (1355)
T ss_pred cchHHHHHHHHH
Confidence 444444444444
No 340
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=55.62 E-value=1.3e+02 Score=28.92 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047440 49 KDFSRMLDNQIEKIV-LFLLEQQGLLASRLARLREQHDALLQQ 90 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~-~f~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (619)
..++ ....|++++. +|+..+...+.+|+..|+.+++++.+-
T Consensus 16 rrr~-~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g 57 (291)
T KOG4466|consen 16 RRRA-NEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQG 57 (291)
T ss_pred Hhhh-hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444 4445566554 699999999999999999999998774
No 341
>COG5293 Predicted ATPase [General function prediction only]
Probab=54.71 E-value=99 Score=31.92 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 047440 50 DFSRMLDNQIEKIVLFLLEQQ----GLLASRLARLREQHDA 86 (619)
Q Consensus 50 ~F~~~l~~e~~kv~~f~~~~~----~~~~~~~~~~~~~~~~ 86 (619)
.|-...-+.+++|..||+... .-+.+.+..++..+.+
T Consensus 313 ~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~ 353 (591)
T COG5293 313 LFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKE 353 (591)
T ss_pred cChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999987432 2233444444444443
No 342
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=54.28 E-value=1.8e+02 Score=28.32 Aligned_cols=64 Identities=22% Similarity=0.201 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 047440 59 IEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILK 129 (619)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlK 129 (619)
++.+.+-|.....++.++++.+++++..- . .....+.+.++.+++..+++...-+...+.++++
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~---~----~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDR---P----SNELLRELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHT---T----THHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---c----chhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455556667777888888888887221 1 2333345666778888888888888888887777
No 343
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.72 E-value=1.8e+02 Score=26.83 Aligned_cols=25 Identities=24% Similarity=0.048 Sum_probs=15.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 111 LKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 111 ~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
..|++|+.=..-+++--=|||||.+
T Consensus 96 ~~L~~F~Kedi~~~Ke~KK~FdK~s 120 (207)
T cd07633 96 KPLENFRKEQIGFTKERKKKFEKDS 120 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4455555545555555667888875
No 344
>PTZ00332 paraflagellar rod protein; Provisional
Probab=52.22 E-value=2.8e+02 Score=29.19 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 97 TELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
..|...+..+-.-+..-..--++=..|..-|--||||..
T Consensus 373 qrL~~tv~Ncd~a~~~~~~lee~V~egc~~i~~r~DK~~ 411 (589)
T PTZ00332 373 KLLELTVYNCDLALRCTGLVEELVSEGCAAVKARHDKTN 411 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344444444444443333333344567778888999986
No 345
>PRK03612 spermidine synthase; Provisional
Probab=52.09 E-value=3.4e+02 Score=29.41 Aligned_cols=30 Identities=20% Similarity=-0.030 Sum_probs=15.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhccchH
Q 047440 546 VAIFLACLGLTVLPVNIIVGSYISNMFEDR 575 (619)
Q Consensus 546 ~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r 575 (619)
+|.++....+++++|+++.+-.+...+|-.
T Consensus 147 ~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~ 176 (521)
T PRK03612 147 VATVLAADYLGALVGGLAFPFLLLPRLGLI 176 (521)
T ss_pred hhhhHhHHhHHHHHHHHHHHHHHHHhcchH
Confidence 455555555555555555553444455543
No 346
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=51.53 E-value=71 Score=30.77 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=49.2
Q ss_pred hHHHhhHHHHHHHHhhhhhhhccc-cCchhHHH----HHHHHH-HHHHHHHHhhcc--CcHHHHHHHHHHhhcc-Ccchh
Q 047440 286 GIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVF----SSIVLF-IGNVMYALAYDF--SSIAVLLIGRLFCGFG-SARAV 356 (619)
Q Consensus 286 g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~----~~~~~~-i~~~l~~~~~~~--~~~~~l~~~r~l~G~~-~~~~~ 356 (619)
....-++..|.++|....|++... +.||+.+. .++++. +..++.....+. .++..+++.-|+.|++ .|.-.
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344455666667777888888765 66777543 223333 333221111111 2456677777787775 34422
Q ss_pred hhhhhhccCccchhhhHhHHHHHHHHHHhHH
Q 047440 357 NRRYISDCVPLKIRMQASAGFVSASALGMAC 387 (619)
Q Consensus 357 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 387 (619)
+.-++..-++.....+.--.++..+++|-++
T Consensus 224 ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILNLPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 2223333232222222222345555555443
No 347
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=51.39 E-value=3.9e+02 Score=29.90 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 99 LREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
..+.+.++..++.++++-.+-....++++.+++.+..
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~ 249 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888887776543
No 348
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=51.30 E-value=2.1e+02 Score=26.62 Aligned_cols=49 Identities=18% Similarity=0.432 Sum_probs=28.9
Q ss_pred cccchhHHHHHHHhhhhHHHHHHHHHHhhhhc--cchHHHHHHHHHHHHHHH
Q 047440 540 GWSTGAVAIFLACLGLTVLPVNIIVGSYISNM--FEDRQILLASEIMVCIGI 589 (619)
Q Consensus 540 g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~--~g~r~~l~~~~~~~~i~~ 589 (619)
|.+.........+..+.....+...|.++.++ .+++. ++.|.++..+|+
T Consensus 153 g~~~~~~~~~igivs~i~~~~G~~lG~~~~~~~~~g~~a-~igGliLI~iG~ 203 (206)
T TIGR02840 153 GLNPLATSILVAVMSFIFVSLGLFLGKKISKKSIIGKFS-FLSGILLILLGV 203 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchH-HHHHHHHHHHHH
Confidence 44555555555555555555666666455555 46666 677777776664
No 349
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=50.60 E-value=2.7e+02 Score=27.76 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 047440 62 IVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKK 130 (619)
Q Consensus 62 v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK 130 (619)
+.+=|....+++.++++++++++.. .+. ....+.+.++.+++..+++...-|...+.++.+.
T Consensus 143 ivd~~~~~l~~l~~~~~~le~~l~~---~~~----~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 143 IIDSYFPLLENIEDELEELEDEIIS---GPT----STLMDEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHhc---CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333444555666666666655432 111 2344577888899999999999999999988653
No 350
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.59 E-value=2.2e+02 Score=30.56 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=25.4
Q ss_pred cchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHH
Q 047440 367 LKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFY 423 (619)
Q Consensus 367 ~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~ 423 (619)
|..||..+......+.+.+.++..+++-+...+....|.-+.+..++...+++.++.
T Consensus 358 Ps~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf~~~ 414 (628)
T KOG1278|consen 358 PSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVFAIF 414 (628)
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHHHHH
Confidence 445666555555555555555545555553333212343333333444444443333
No 351
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.49 E-value=1.7e+02 Score=29.53 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=40.0
Q ss_pred chhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 23 YKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 23 Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
.+.++..|+++...+. ..++=++.|..++.|=-.|+.+-..|-.=|.+.+|++++++.+
T Consensus 262 l~aileeL~eIk~~q~--------~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlte 320 (455)
T KOG3850|consen 262 LDAILEELREIKETQA--------LLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTE 320 (455)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455555555543222 1345566777888888888888888888888888888887654
No 352
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.30 E-value=1.7e+02 Score=28.42 Aligned_cols=20 Identities=30% Similarity=0.786 Sum_probs=14.1
Q ss_pred hhhHHh-----------ccCchhhHHHHHHh
Q 047440 14 QEWQSY-----------YINYKLMKKKVKQY 33 (619)
Q Consensus 14 ~ew~~~-----------yi~Y~~lKk~i~~~ 33 (619)
..|+++ |=-|..-|+.+-..
T Consensus 81 ~rwrdy~vmAvi~aGi~y~~y~~~K~YV~P~ 111 (300)
T KOG2629|consen 81 RRWRDYFVMAVILAGIAYAAYRFVKSYVLPR 111 (300)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 468877 66677788877654
No 353
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=48.96 E-value=1.1e+02 Score=32.50 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=33.9
Q ss_pred HHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHH
Q 047440 346 LFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPAL 391 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i 391 (619)
++.-+.... .+..++-+.+.+|..=|++|.+.+...++|+---..+
T Consensus 413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~ 460 (544)
T PF13000_consen 413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTF 460 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHH
Confidence 444444433 7778888999999999999999999888876443333
No 354
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.79 E-value=47 Score=26.81 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=16.0
Q ss_pred HHhhhhHHHHHHHHHHhhhhcc-chHHH
Q 047440 551 ACLGLTVLPVNIIVGSYISNMF-EDRQI 577 (619)
Q Consensus 551 ~~~~~~~~~~~~~~g~~l~d~~-g~r~~ 577 (619)
+.-.+.+++++.++| |+.||+ |...+
T Consensus 49 ssefIsGilVGa~iG-~llD~~agTsPw 75 (116)
T COG5336 49 SSEFISGILVGAGIG-WLLDKFAGTSPW 75 (116)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhcCCCcH
Confidence 334455666677778 888886 43333
No 355
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.72 E-value=2.9e+02 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=10.3
Q ss_pred hcchhhHHhccCchhhHHHHHH
Q 047440 11 RQIQEWQSYYINYKLMKKKVKQ 32 (619)
Q Consensus 11 ~~~~ew~~~yi~Y~~lKk~i~~ 32 (619)
...=|||.+-+ +.||.-+.+
T Consensus 132 ~~WYeWR~kll--egLk~~L~~ 151 (312)
T smart00787 132 KMWYEWRMKLL--EGLKEGLDE 151 (312)
T ss_pred HHHHHHHHHHH--HHHHHHHHH
Confidence 33457776663 344444443
No 356
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.66 E-value=41 Score=28.54 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=4.8
Q ss_pred CchhhHHHHH
Q 047440 22 NYKLMKKKVK 31 (619)
Q Consensus 22 ~Y~~lKk~i~ 31 (619)
+|..|++...
T Consensus 58 ~~SnlRp~v~ 67 (178)
T KOG4094|consen 58 NLSNLRPIVL 67 (178)
T ss_pred hhhhhhHHHH
Confidence 3555555443
No 357
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=48.52 E-value=81 Score=27.51 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDA 86 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (619)
.+....++.|++++...|..+...+..+++.++..+..
T Consensus 20 ~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 20 ARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777777776666666666644433
No 358
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=48.17 E-value=2.4e+02 Score=28.77 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=13.1
Q ss_pred HhccCchhhHHHHHHhhhhhh
Q 047440 18 SYYINYKLMKKKVKQYAQQIE 38 (619)
Q Consensus 18 ~~yi~Y~~lKk~i~~~~~~~~ 38 (619)
+...++.+.++.-+.+....+
T Consensus 217 DWR~hleqm~~~~~~I~~~~~ 237 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALP 237 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 556666777777666665443
No 359
>COG3619 Predicted membrane protein [Function unknown]
Probab=47.10 E-value=2.5e+02 Score=26.45 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 375 AGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 375 ~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+......-++.++|...++.+...++
T Consensus 171 ~~~~~~~il~f~~GAi~g~ll~~~~g 196 (226)
T COG3619 171 WLIYLSLILSFIVGAICGALLTLFFG 196 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666677777777777755543
No 360
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.83 E-value=1.2e+02 Score=32.98 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=40.4
Q ss_pred CchhhHHHHHHhhhhhhccchhhh--hHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 22 NYKLMKKKVKQYAQQIEVGAQDRR--HVLKDFSRMLD------------------NQIEKIVLFLLEQQGLLASRLARLR 81 (619)
Q Consensus 22 ~Y~~lKk~i~~~~~~~~~~~~~~~--~~~~~F~~~l~------------------~e~~kv~~f~~~~~~~~~~~~~~~~ 81 (619)
+.+.|++.|++++.+......+.. +....|.+.+. .++.+...||.++..++..+...++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888877654443222211 12344555543 4577788888888888887777777
Q ss_pred HHHHHH
Q 047440 82 EQHDAL 87 (619)
Q Consensus 82 ~~~~~~ 87 (619)
.+++++
T Consensus 152 ~~~~~~ 157 (525)
T TIGR02231 152 RRIREL 157 (525)
T ss_pred HHHHHH
Confidence 665443
No 361
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=46.55 E-value=1.9e+02 Score=24.72 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHh
Q 047440 91 PDISQMTELREAYRAAGMDLLKLLF 115 (619)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (619)
|..++...|...+.+|...+..|..
T Consensus 106 Ps~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 106 PSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888999999999999888753
No 362
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=46.00 E-value=74 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 374 SAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 374 ~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
+|.++....+..++|..+|-||-..++
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444555556666777777777755443
No 363
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.69 E-value=1.2e+02 Score=30.51 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=17.0
Q ss_pred hhhHHhccCchhhHHHHHHhhh
Q 047440 14 QEWQSYYINYKLMKKKVKQYAQ 35 (619)
Q Consensus 14 ~ew~~~yi~Y~~lKk~i~~~~~ 35 (619)
.|+.-.-|-|..|+|.|+.-+.
T Consensus 7 l~y~l~ripye~l~kr~r~~qk 28 (389)
T KOG0396|consen 7 LEYQLFRIPYELLNKRIRHNQK 28 (389)
T ss_pred hhchhhcCCHHHHHHHHHHhHH
Confidence 4556667899999999997654
No 364
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=44.68 E-value=2.2e+02 Score=24.95 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=38.7
Q ss_pred hhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 14 QEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLRE 82 (619)
Q Consensus 14 ~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (619)
||++.--=+...+|.-|.......+.+.+=....+++.++.|..-.+++..|+.+-..-+..|-+.+.+
T Consensus 20 ~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~~Ra~~v~k 88 (150)
T PF02252_consen 20 PEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFSARAKAVSK 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444444444444332222233333334567889889888899999988777777777555544
No 365
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.58 E-value=1.9e+02 Score=24.37 Aligned_cols=36 Identities=6% Similarity=-0.054 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 52 SRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDAL 87 (619)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (619)
++.|+.|++.+..=-..+..+...+-+.+++++.++
T Consensus 29 l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~ 64 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAEL 64 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777766666666666666666666553
No 366
>PRK11637 AmiB activator; Provisional
Probab=44.14 E-value=2.9e+02 Score=29.09 Aligned_cols=13 Identities=8% Similarity=-0.363 Sum_probs=7.8
Q ss_pred hhhhhhccccCch
Q 047440 301 VYFSAWSNRSYFK 313 (619)
Q Consensus 301 ~~~G~l~Dr~Grr 313 (619)
|+-|.++.+||.+
T Consensus 310 Pv~g~i~~~fg~~ 322 (428)
T PRK11637 310 PVRGPTLHRFGEQ 322 (428)
T ss_pred CCCCCccCCCCCC
Confidence 4456666677754
No 367
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.52 E-value=55 Score=26.41 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhhhhccc-cCchhHH
Q 047440 292 MAIAQVFSSVYFSAWSNR-SYFKPLV 316 (619)
Q Consensus 292 ~~~~~~i~~~~~G~l~Dr-~Grr~~~ 316 (619)
=+++..+.....||+.|| +|-+|..
T Consensus 51 efIsGilVGa~iG~llD~~agTsPwg 76 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFAGTSPWG 76 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 345555566678899999 5666644
No 368
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=43.50 E-value=2.7e+02 Score=25.74 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 374 SAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 374 ~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
-.......-++.++|.++++++....
T Consensus 164 ~~~~~~~~i~~f~~Ga~~ga~l~~~~ 189 (209)
T PF06912_consen 164 RALRYLLIILSFFIGAILGALLYRRL 189 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666777665544
No 369
>PRK02237 hypothetical protein; Provisional
Probab=43.05 E-value=1.8e+02 Score=23.64 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=40.7
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 544 GAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 544 ~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
...|-.++..+-+-++.+++.+ +.+|+..+-+.=.+|..++.+|..++.+.+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~-w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWL-WVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHH-HHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3477888888888888999988 999998777766778888888776665543
No 370
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.89 E-value=3.4e+02 Score=30.12 Aligned_cols=93 Identities=10% Similarity=0.101 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChhHHH--------HHHHHHHHHHHHHHHHHhHH
Q 047440 50 DFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQ----PDISQMT--------ELREAYRAAGMDLLKLLFFV 117 (619)
Q Consensus 50 ~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~~~~~~l~~~~ 117 (619)
+.++..+.|+++.+.+=..+.+++..+... ++.++... ...+... .-.....++...+..+.++.
T Consensus 290 d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~---Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~ 366 (660)
T KOG4302|consen 290 DIIEQVEKEVDRLEQLKASNMKELIEKKRS---ELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKY 366 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 456677899999999988887777655433 44433221 1111111 11224466777788899999
Q ss_pred HHHHHHHHHHHHhhhhhcCCccchHHHH
Q 047440 118 EINAIGLRKILKKFDKRFGYRFTDYYVK 145 (619)
Q Consensus 118 ~lN~~~~~KIlKK~dK~~~~~~~~~~~~ 145 (619)
+=+...+-+|+++-|||........|++
T Consensus 367 keea~srk~il~~ve~W~sa~EeE~~le 394 (660)
T KOG4302|consen 367 KEEALSRKEILERVEKWESACEEESWLE 394 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 9999999999999999998887777775
No 371
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=42.69 E-value=2.7e+02 Score=29.97 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=6.7
Q ss_pred hhHHHHHHhhh
Q 047440 25 LMKKKVKQYAQ 35 (619)
Q Consensus 25 ~lKk~i~~~~~ 35 (619)
.|||.||++++
T Consensus 46 DLKkEIKKLQR 56 (575)
T KOG2150|consen 46 DLKKEIKKLQR 56 (575)
T ss_pred HHHHHHHHHHH
Confidence 46666666554
No 372
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.48 E-value=3.7e+02 Score=27.03 Aligned_cols=25 Identities=12% Similarity=0.314 Sum_probs=13.4
Q ss_pred hHHhhhcchhhHHhccCchhhHHHHHH
Q 047440 6 KKLKERQIQEWQSYYINYKLMKKKVKQ 32 (619)
Q Consensus 6 ~~l~~~~~~ew~~~yi~Y~~lKk~i~~ 32 (619)
+.......=||+.+-+ +.||..+.+
T Consensus 132 Rl~aK~~WYeWR~~ll--~gl~~~L~~ 156 (325)
T PF08317_consen 132 RLEAKKMWYEWRMQLL--EGLKEGLEE 156 (325)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3333444567887765 455544443
No 373
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.39 E-value=2e+02 Score=26.71 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 57 NQIEKIVLFLLEQQGLLASRLARLREQHD 85 (619)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~ 85 (619)
.|++.++.=.++...++.++++..++..+
T Consensus 107 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (206)
T PRK10884 107 DKLNNIDNTWNQRTAEMQQKVAQSDSVIN 135 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444333333
No 374
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=42.23 E-value=3e+02 Score=29.69 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=11.2
Q ss_pred hhHHhccCchhhHHHHHH
Q 047440 15 EWQSYYINYKLMKKKVKQ 32 (619)
Q Consensus 15 ew~~~yi~Y~~lKk~i~~ 32 (619)
|++|.|+|--..+..+|-
T Consensus 7 efsd~~ldsp~fre~l~~ 24 (812)
T KOG1451|consen 7 EFSDCYLDSPDFRERLKC 24 (812)
T ss_pred cccccccCChHHHHHhhH
Confidence 566667666666665554
No 375
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.59 E-value=5.4e+02 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.002 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 102 AYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 102 ~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
....+-.++..+++=..-+.....|.+|||+-..
T Consensus 907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 907 ERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 4566777788888888889999999999998544
No 376
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=41.58 E-value=1.7e+02 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=16.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 047440 54 MLDNQIEKIV---LFLLEQQGLLASRLARLRE 82 (619)
Q Consensus 54 ~l~~e~~kv~---~f~~~~~~~~~~~~~~~~~ 82 (619)
.|-.++++++ +-|.++...+.+|.+.+-+
T Consensus 18 ~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~ 49 (84)
T PF11414_consen 18 VLLQGLEMEERERDWYQQQLQSVQERQRHLGR 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445555544 6777777777777666544
No 377
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=41.26 E-value=8.9 Score=38.35 Aligned_cols=17 Identities=6% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHH
Q 047440 549 FLACLGLTVLPVNIIVG 565 (619)
Q Consensus 549 ~~~~~~~~~~~~~~~~g 565 (619)
.+....++-.+|+.+.+
T Consensus 187 ~fl~Fn~gD~iGR~l~~ 203 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLAS 203 (309)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHhcchhcc
Confidence 45566777777777755
No 378
>PF01581 FARP: FMRFamide related peptide family; InterPro: IPR002544 The neuropeptide Phe-Met-Arg-Phe-NH2 (FMRFamide) is a potent cardioactive neuropeptide in Lymnaea stagnalis []. FMRFamide (Phe-Met-Arg-Phe-NH2) was first demonstrated to be cardioactive in several molluscan species. FMRFamide is now known to be cardioexcitatory in mammals, to inhibit morphine-induced antinociception, and to block morphine-, defeat-, and deprivation-induced feeding []. Thirteen neuropeptides varying in length from 7 to 11 residues and ending C-terminally in -Phe-Met-Arg-Phe-NH2 (calliFMRFamides 1-13) and one dodecapeptide ending in -Met-Ile-Arg-Phe-NH2 (calliMIRFamide 1) have been isolated from thoracic ganglia of the blowfly Calliphora vomitoria. Results indicate that the N terminus (in addition to the C terminus as previously found for FMRFamides of other organisms) is crucial for at least some biological activities [].; GO: 0007218 neuropeptide signaling pathway
Probab=40.80 E-value=10 Score=17.04 Aligned_cols=6 Identities=33% Similarity=1.049 Sum_probs=4.7
Q ss_pred CCcchh
Q 047440 1 MVAFGK 6 (619)
Q Consensus 1 ~MkFg~ 6 (619)
.|+|||
T Consensus 6 ~~RFGr 11 (11)
T PF01581_consen 6 FMRFGR 11 (11)
T ss_pred ccccCC
Confidence 489986
No 379
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=40.37 E-value=4.2e+02 Score=27.11 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=42.9
Q ss_pred HhccCchhhHHHHHHhhhhhhccc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH
Q 047440 18 SYYINYKLMKKKVKQYAQQIEVGA--QDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQ 95 (619)
Q Consensus 18 ~~yi~Y~~lKk~i~~~~~~~~~~~--~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (619)
..|++++.+++.++++.......+ ++. +. ...+.+|+..+..=.. ...++....++++.-.+-+....+.+.
T Consensus 20 ~~~~~l~~~~~~~~~l~~~l~~p~~~~d~----~~-~~~l~ke~~~L~~iv~-~~~~l~~~~~e~~~~~ell~~e~D~el 93 (367)
T PRK00578 20 RGVLDVDALKERLEELEAEAEDPDFWNDQ----ER-AQKVTKELSSLKAKLD-TLEELRQRLDDLEELLELAEEEDDEET 93 (367)
T ss_pred HhhCCHHHHHHHHHHHHHHhcCCccccCH----HH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 458888888888887764332211 011 11 2233344444332222 122233333333322222222234455
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047440 96 MTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~ 114 (619)
...+.+.+.++..++..+.
T Consensus 94 ~~~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 94 LAEAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566667777777776665
No 380
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=40.24 E-value=97 Score=20.77 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 58 QIEKIVLFLLEQQGLLASRLARLR 81 (619)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~ 81 (619)
|++.-+.|-++..+|+++|++.|-
T Consensus 31 e~~~~~kfnqem~aefheri~klg 54 (59)
T PF07384_consen 31 EINSQNKFNQEMQAEFHERIKKLG 54 (59)
T ss_pred hhcchhHhhHHHHHHHHHHHHHhc
Confidence 567778888899999999998764
No 381
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=40.15 E-value=3.7e+02 Score=26.37 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDIS---QMTELREAYRAAGMDLLKLLFFVEINAIGLR 125 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~ 125 (619)
.-|.+.|.++++....-......++..+++.|.+.++....-+... .+..+-+.-..+..++..|..-.++ ..-+.
T Consensus 61 e~fLr~ll~dl~~~~~~V~~l~~~~~~~l~~L~~tv~~rtAVPt~~VyP~Fi~Ls~~W~~lqde~~ll~~l~~l-~~~L~ 139 (281)
T PF12018_consen 61 EIFLRILLSDLITCAQRVEELIKRFEAQLEKLKETVKSRTAVPTAQVYPLFIALSQLWSGLQDELNLLSVLNNL-LENLQ 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6799999999999998888778888888888887776544333322 2333333334444444444332221 22333
Q ss_pred HHHHhhhhhc
Q 047440 126 KILKKFDKRF 135 (619)
Q Consensus 126 KIlKK~dK~~ 135 (619)
...|.+++..
T Consensus 140 ~~~~~~~~~~ 149 (281)
T PF12018_consen 140 PFSKSFTLSF 149 (281)
T ss_pred HHHhhhhhhC
Confidence 4445555443
No 382
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=39.58 E-value=4.1e+02 Score=26.74 Aligned_cols=89 Identities=8% Similarity=-0.049 Sum_probs=47.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHH--HHHH
Q 047440 243 QKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLV--FSSI 320 (619)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~--~~~~ 320 (619)
+.+.|-..+++.................+|.+.+-+...+...-+....+.+--.+|.+.+|.-.|+.|----. ..++
T Consensus 30 k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl 109 (344)
T PF06379_consen 30 KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGL 109 (344)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHH
Confidence 45666555544322221111222222334555554544454455555667777788999999988888865543 3333
Q ss_pred HHHHHHHHHHH
Q 047440 321 VLFIGNVMYAL 331 (619)
Q Consensus 321 ~~~i~~~l~~~ 331 (619)
+..+|+++-+.
T Consensus 110 ~~~~GTlippi 120 (344)
T PF06379_consen 110 CAVFGTLIPPI 120 (344)
T ss_pred HHHHhhchHHH
Confidence 33466666444
No 383
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.42 E-value=3.1e+02 Score=25.31 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047440 52 SRMLDNQIEKIVLFLLEQQG---LLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINA 121 (619)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~ 121 (619)
.+.|+.+++|+..+.....+ .+....+..-..+.++......+. .+.+++.++..-+.++.+|.....
T Consensus 11 ~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~--~i~~~L~kF~~~l~ei~~~~~~l~ 81 (200)
T cd07637 11 VVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDE--MISECLDKFGDSLQEMVNYHMILF 81 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888775433 333333333333433333221111 244555666666666666655444
No 384
>PRK14162 heat shock protein GrpE; Provisional
Probab=39.28 E-value=3.1e+02 Score=25.20 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhhhc
Q 047440 121 AIGLRKILKKFDKRF 135 (619)
Q Consensus 121 ~~~~~KIlKK~dK~~ 135 (619)
+.|+.=|+|++.+.+
T Consensus 119 ~~Gvemi~k~l~~vL 133 (194)
T PRK14162 119 KKGVQMTLDHLVKAL 133 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357777777777665
No 385
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=38.95 E-value=1.6e+02 Score=31.86 Aligned_cols=42 Identities=14% Similarity=-0.051 Sum_probs=31.8
Q ss_pred CccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 365 VPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 365 ~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
..++.||..+...-....+++.++..+++.+...++...|.+
T Consensus 290 ~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~ 331 (521)
T PF02990_consen 290 LSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKK 331 (521)
T ss_pred ccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceee
Confidence 446788988888888888888888888888866665335655
No 386
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=38.93 E-value=5e+02 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQGLLA---SRLARLREQHDAL 87 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~~~~---~~~~~~~~~~~~~ 87 (619)
.+.-.+.+..||+||.+|-+.....-. +.++.|++.++.+
T Consensus 110 n~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~ 152 (508)
T PF00901_consen 110 NKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSY 152 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHH
Confidence 455667778999999999986654333 3566666665543
No 387
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=38.62 E-value=4.2e+02 Score=26.56 Aligned_cols=65 Identities=15% Similarity=-0.025 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 047440 61 KIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFD 132 (619)
Q Consensus 61 kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~d 132 (619)
.+.+-|..-.+++.++++.+++++..-.. ....+.+.++.+++..+++...-|..++.+..+...
T Consensus 147 ~i~d~~~~~le~i~~~~~~ie~~l~~~~~-------~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~ 211 (322)
T COG0598 147 AIVDNYFPVLEQIEDELEAIEDQLLASTT-------NEELERLGELRRSLVYLRRALAPLRDVLLRLARRPL 211 (322)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcCcc-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCc
Confidence 34455666677778888888877655221 155678888999999999999888888888888764
No 388
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.24 E-value=3.5e+02 Score=30.66 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChhHHHHHHHHHHHHHHHHHHHH
Q 047440 47 VLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQ------PDISQMTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 47 ~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 114 (619)
.|.+|.++|+.==+++ +-+....+++..+++..+.+++.-.+. -.....+.+++.+.+.+.++..+.
T Consensus 633 AEr~~~~EL~~~~~~l-~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v 705 (717)
T PF10168_consen 633 AEREFKKELERMKDQL-QDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELV 705 (717)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665444211111 223344444555555444433321111 113456677777777777766553
No 389
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=38.22 E-value=1.3e+02 Score=21.03 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
+.....+..-++.+..=...+..|.-.|++.||+.+..+..
T Consensus 9 ~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 9 QNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444445555555667777777777777666543
No 390
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=37.86 E-value=1.3e+02 Score=28.66 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=14.7
Q ss_pred HHHHHhhhhccchHHHHHHHHHHH
Q 047440 562 IIVGSYISNMFEDRQILLASEIMV 585 (619)
Q Consensus 562 ~~~g~~l~d~~g~r~~l~~~~~~~ 585 (619)
.+.|..++.|+..|.+.++|.+++
T Consensus 257 VigGk~lAskIS~rtVt~~ggi~F 280 (294)
T KOG2881|consen 257 VIGGKYLASKISVRTVTLIGGILF 280 (294)
T ss_pred HhhhHHHhhhheeEEEEEecchhH
Confidence 344556678888777666554433
No 391
>PRK15015 carbon starvation protein A; Provisional
Probab=37.53 E-value=6.2e+02 Score=28.16 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccCcc-hhhhhh--hhccCccc
Q 047440 292 MAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSAR-AVNRRY--ISDCVPLK 368 (619)
Q Consensus 292 ~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~--i~~~~~~~ 368 (619)
..+...+|+.-+|.++-.-|-..--+. +..++..++..+ --++.-++.+=+.++=-.- +.+..+ =.|.+|.+
T Consensus 10 w~~~a~~ga~~~~~~al~rge~mnal~--lv~aa~~~y~ia---YrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~ 84 (701)
T PRK15015 10 WTVLSVMGAFALGYIALNRGEQINALW--IVVASVCIYLIA---YRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTD 84 (701)
T ss_pred HHHHHHHHHHHheeeeecCCCchhHHH--HHHHHHHHHHHH---HHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCC
Confidence 345567777888888876665521111 111222223333 2233444444455554333 222222 14556554
Q ss_pred hhhhHhHH-HHHHHHHHhHHHHHHhhh
Q 047440 369 IRMQASAG-FVSASALGMACGPALAGL 394 (619)
Q Consensus 369 ~r~~~~~~-~~~~~~~G~~~g~~i~~~ 394 (619)
|-..+|- +....+.|.++||.++..
T Consensus 85 -k~VLfGHHFasIAGAGPivGPvlAa~ 110 (701)
T PRK15015 85 -KKVLFGHHFAAIAGAGPLVGPVLAAQ 110 (701)
T ss_pred -ccchhHHHHHHHhccCccHHHHHHHH
Confidence 5566775 566677788888888763
No 392
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=37.51 E-value=4.3e+02 Score=28.65 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=11.4
Q ss_pred HHhhhhHHHHHHHHHHhhhhccch
Q 047440 551 ACLGLTVLPVNIIVGSYISNMFED 574 (619)
Q Consensus 551 ~~~~~~~~~~~~~~g~~l~d~~g~ 574 (619)
....+.+.+++...+ ++-..++.
T Consensus 304 ~~y~~~~~iaGy~S~-~~yk~~~g 326 (521)
T PF02990_consen 304 ILYALTSFIAGYVSA-RLYKSFGG 326 (521)
T ss_pred HHHHHHhhHHHHHHH-HHHHHcCC
Confidence 334444455555555 55555543
No 393
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=37.24 E-value=3.4e+02 Score=29.07 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChhHHHHHHHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALL--QQPDISQMTELREAYRAAGMDLLKL 113 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l 113 (619)
++=++.|..|+-++..=|+...+.+...=+. +.++. .+...-....+++.+.+.|.|+.++
T Consensus 232 ~e~i~~LQeE~l~tQ~kYQreLErlEKENke----Lr~lll~kd~k~i~~kklKkSLIDMYSEVLD~ 294 (980)
T KOG0447|consen 232 KEKIDQLQEELLHTQLKYQRILERLEKENKE----LRKLVLQKDDKGIHHRKLKKSLIDMYSEVLDV 294 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666554444333322222222 22221 2233445678999999999887665
No 394
>PRK14163 heat shock protein GrpE; Provisional
Probab=36.96 E-value=3.5e+02 Score=25.22 Aligned_cols=15 Identities=7% Similarity=0.333 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhhc
Q 047440 121 AIGLRKILKKFDKRF 135 (619)
Q Consensus 121 ~~~~~KIlKK~dK~~ 135 (619)
+.|+.=|.|++.+.+
T Consensus 113 ~~Gv~mi~k~l~~~L 127 (214)
T PRK14163 113 VGGFKSVAESLETTV 127 (214)
T ss_pred HHHHHHHHHHHHHHH
Confidence 347777777776665
No 395
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=36.84 E-value=2.6e+02 Score=25.50 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=25.5
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 50 DFSRML---DNQIEKIVLFLLEQQGLLASRLARLREQ 83 (619)
Q Consensus 50 ~F~~~l---~~e~~kv~~f~~~~~~~~~~~~~~~~~~ 83 (619)
.+-..| +.||.|.+.||.++.+.+.++-....+.
T Consensus 134 ~la~qLe~ke~el~~~d~fykeql~~le~k~~e~yk~ 170 (187)
T PF05300_consen 134 QLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFYKV 170 (187)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 6899999999999988888776665543
No 396
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=36.69 E-value=2.4e+02 Score=31.65 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQ 95 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (619)
++|...-+.=+....++...+++.+.++.+.|+++.+.+.+.--++.
T Consensus 223 ~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedR 269 (683)
T PF08580_consen 223 EEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDR 269 (683)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45665555555555566666888888888888888887766444433
No 397
>PRK09776 putative diguanylate cyclase; Provisional
Probab=36.67 E-value=8.1e+02 Score=29.32 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=5.4
Q ss_pred HhHHHHHHhhhh
Q 047440 384 GMACGPALAGLL 395 (619)
Q Consensus 384 G~~~g~~i~~~l 395 (619)
|.+++++++|.+
T Consensus 112 ~~~~~~l~~~~~ 123 (1092)
T PRK09776 112 SAIVPPLLGGVL 123 (1092)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 398
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=36.64 E-value=1.8e+02 Score=31.10 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=9.9
Q ss_pred cCchhhHHHHHHhh
Q 047440 21 INYKLMKKKVKQYA 34 (619)
Q Consensus 21 i~Y~~lKk~i~~~~ 34 (619)
||+++||+.|++-.
T Consensus 372 iDe~KL~~al~~~p 385 (483)
T COG1345 372 IDEAKLKAALNEDP 385 (483)
T ss_pred ECHHHHHHHHHhCh
Confidence 57777777777644
No 399
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=36.62 E-value=3.1e+02 Score=24.52 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 047440 58 QIEKIVLFLLEQQGLLASRLAR--LREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFD 132 (619)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~d 132 (619)
||+=|-.-|.....|+.++++. |.+.++. ....+++.+.++..+.++|++-..=|.--.+.|-||-.
T Consensus 105 ELDVvL~~FEk~~~eYkq~ieS~~cr~AI~~--------F~~~~keqL~~~i~evq~lK~lkrkNakv~~~i~kkrq 173 (175)
T PF13097_consen 105 ELDVVLSAFEKTALEYKQSIESKICRKAINK--------FYSNFKEQLIEMIKEVQELKNLKRKNAKVISDINKKRQ 173 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444455555555433 4444433 35678889999999999999999999988899988854
No 400
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=36.22 E-value=2e+02 Score=22.60 Aligned_cols=57 Identities=11% Similarity=-0.032 Sum_probs=34.2
Q ss_pred chHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhh
Q 047440 498 SIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLG 554 (619)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 554 (619)
.++++.+..++-.+.+..+.+...+++.....+.|..+.....-+....|+.+++..
T Consensus 6 ~f~~L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~ 62 (91)
T PF04341_consen 6 EFQELVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQ 62 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHH
Confidence 345555543445556666677777777777777877776654323455566554433
No 401
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=36.03 E-value=2.1e+02 Score=28.21 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=35.3
Q ss_pred HHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 341 LLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 341 l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
.-..|.+.|+-.-. ...+++++-.+|.+++--..--...+.+++.++-|++|-.+.
T Consensus 22 ~~~lr~~~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~ 78 (287)
T PF07760_consen 22 IPPLRVILGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLN 78 (287)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777766555 677888888888654443333345555566666677766664
No 402
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=35.92 E-value=3.5e+02 Score=24.89 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHHHHHHHHhhh
Q 047440 111 LKLLFFVEINAIGLRKILKKFD 132 (619)
Q Consensus 111 ~~l~~~~~lN~~~~~KIlKK~d 132 (619)
..|..|+..+..=|.++.....
T Consensus 201 ~~l~~~i~~q~~~~~~~~~~l~ 222 (229)
T PF03114_consen 201 PCLQSFIEAQLQYFQQLYQILE 222 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 403
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=35.71 E-value=22 Score=38.03 Aligned_cols=34 Identities=24% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCcc
Q 047440 106 AGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRF 139 (619)
Q Consensus 106 ~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~~~ 139 (619)
+...+...++|..+|++++-|+.||.||..+.+.
T Consensus 7 ~~~~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~ 40 (586)
T KOG1281|consen 7 IVNTLLQYRSLLVLNRTPLLLLPKKLDKLLHSSE 40 (586)
T ss_pred HHHHHHHhhhhheeehhhhhhcchhhhhhcCCcH
Confidence 3348899999999999999999999999998875
No 404
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=35.60 E-value=1.1e+02 Score=29.88 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047440 47 VLKDFSRMLDNQIEKIVL 64 (619)
Q Consensus 47 ~~~~F~~~l~~e~~kv~~ 64 (619)
++...|..++.|++.|.+
T Consensus 192 aE~sM~nlle~d~eqvsq 209 (366)
T KOG1118|consen 192 AEDSMFNLLENDVEQVSQ 209 (366)
T ss_pred HHHHHHHHHhcCHHHHHH
Confidence 344455555555555443
No 405
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=35.28 E-value=25 Score=34.96 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=52.9
Q ss_pred ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH--HHHHHHHHhhccCcHHHHHHHHHHhhccCcc
Q 047440 281 AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF--IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR 354 (619)
Q Consensus 281 s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~--i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~ 354 (619)
.-..+|.++..+.++..+.+.+.|.++.++||-+.+..+.+.- ....+....+...+.|.+.+.-.+.|++-+.
T Consensus 308 Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aalwgv~d~v 383 (390)
T KOG3097|consen 308 GVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAALWGVGDAV 383 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehhhcCccHHH
Confidence 3467899999999999999999999999999999886665432 3333333333335666666666777766543
No 406
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=35.25 E-value=1.2e+02 Score=26.92 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=14.9
Q ss_pred HhccCchhhHHHHHHhhhhhhcc
Q 047440 18 SYYINYKLMKKKVKQYAQQIEVG 40 (619)
Q Consensus 18 ~~yi~Y~~lKk~i~~~~~~~~~~ 40 (619)
...=++++||+.|++.+++....
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHcC
Confidence 44456777788877777655543
No 407
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.08 E-value=3.3e+02 Score=24.80 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhhhc
Q 047440 121 AIGLRKILKKFDKRF 135 (619)
Q Consensus 121 ~~~~~KIlKK~dK~~ 135 (619)
..|+.-|.|++.+.+
T Consensus 110 ~~Gv~mi~k~l~~vL 124 (185)
T PRK14139 110 REGVELTLKQLTSAF 124 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666665
No 408
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.01 E-value=4.1e+02 Score=25.40 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred chhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChhH
Q 047440 23 YKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIV----LFLLEQQGLLASRLARLREQHDALLQQ---PDISQ 95 (619)
Q Consensus 23 Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~----~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 95 (619)
+..+|..|..+..........+.+....+...++.+++.+. .-+..+...+..+++.|.+++..+... ...+.
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r 115 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEER 115 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047440 96 MTELREAYRAAGMDLLKLLF 115 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~ 115 (619)
...+.....++..++..|..
T Consensus 116 ~~~ie~~~~~l~~~l~~l~~ 135 (247)
T PF06705_consen 116 PQDIEELNQELVRELNELQE 135 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHH
No 409
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=34.92 E-value=4.5e+02 Score=25.79 Aligned_cols=84 Identities=8% Similarity=-0.025 Sum_probs=45.4
Q ss_pred chHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHH
Q 047440 498 SIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQI 577 (619)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~ 577 (619)
.+++..+ +|+.+..+...............+.+. +-...++++-+-+..+.+++.+.+ ++-+|+.+-..
T Consensus 61 ~~~~~~~--~p~~~~~~~l~a~li~~nW~lfiWAvn------~g~~leaSLGY~InPL~~VllG~l---flkErls~~Q~ 129 (293)
T COG2962 61 ELKQLLK--QPKTLLMLALTALLIGLNWWLFIWAVN------NGHVLEASLGYFINPLVNVLLGRL---FLKERLSRLQW 129 (293)
T ss_pred HHHHHHh--CcHHHHHHHHHHHHHHHHHHHhheecC------CCchhHHHhHHHHHHHHHHHHHHH---HHHhhccHHHH
Confidence 3444333 565555554444433333333222221 113445566666667777766666 56789888777
Q ss_pred HHHHHHHHHHHHHhh
Q 047440 578 LLASEIMVCIGILFS 592 (619)
Q Consensus 578 l~~~~~~~~i~~~~~ 592 (619)
+.++...+++..-..
T Consensus 130 iAV~lA~~GV~~~~~ 144 (293)
T COG2962 130 IAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 766666665554443
No 410
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=34.72 E-value=3.2e+02 Score=24.07 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 51 FSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDAL 87 (619)
Q Consensus 51 F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (619)
-...|+.|+++..+=+....+++..--+.++++....
T Consensus 19 ~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~ 55 (165)
T PF01025_consen 19 ELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEA 55 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666777776666666665554444444444443
No 411
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=33.97 E-value=2.8e+02 Score=28.55 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHH
Q 047440 507 TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLA 580 (619)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~ 580 (619)
++..+.+.+.+++..+.--.......+|+....|-+...++..-.+-+...++.+.++| ...|+..|.+++..
T Consensus 26 s~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivG-q~vDg~sr~Kvi~~ 98 (503)
T KOG2601|consen 26 SSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVG-QWVDGMSRVKVIQT 98 (503)
T ss_pred cceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHH-HHhcchhHHHHHHH
Confidence 33444555666666665555555556666666564455555544455555556666677 67888888876653
No 412
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=33.89 E-value=2e+02 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 047440 47 VLKDFSRMLDNQIEKIVLFL-LEQQGLLASRLARLREQHDA 86 (619)
Q Consensus 47 ~~~~F~~~l~~e~~kv~~f~-~~~~~~~~~~~~~~~~~~~~ 86 (619)
...+++..|++.++++..=+ .++.+++.+||+.|.+.++.
T Consensus 43 ~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~ 83 (157)
T PF07304_consen 43 PIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNN 83 (157)
T ss_dssp -HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhc
Confidence 34567778888888776544 44468999999999988864
No 413
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=33.75 E-value=3.5e+02 Score=26.80 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 43 DRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHD 85 (619)
Q Consensus 43 ~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~ 85 (619)
.+++..+...+.|.-|++|+.+||.-. .++...+-.+..++-
T Consensus 55 s~ee~qe~aw~al~P~V~kLk~Fy~Fs-~~le~~~~~ll~~L~ 96 (303)
T PF07159_consen 55 SDEELQEKAWEALEPLVKKLKEFYEFS-QELEKVFPKLLKELC 96 (303)
T ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 344567889999999999999999843 355555555544444
No 414
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=33.68 E-value=1.1e+02 Score=27.78 Aligned_cols=28 Identities=7% Similarity=0.180 Sum_probs=22.1
Q ss_pred HhhHHHHHHHHhhhhhhhccccCc-hhHH
Q 047440 289 IGAMAIAQVFSSVYFSAWSNRSYF-KPLV 316 (619)
Q Consensus 289 ~s~~~~~~~i~~~~~G~l~Dr~Gr-r~~~ 316 (619)
+.-|.+++.+++.+.|+++||..+ ++..
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~~~~~~ 116 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRKRNGFI 116 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhccccHH
Confidence 455788999999999999999774 4443
No 415
>PF12630 Pox_polyA_pol_N: Poxvirus poly(A) polymerase N-terminal domain; InterPro: IPR024398 This domain is found at the N terminus of the pox virus Poly(A) polymerase protein []. Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit.; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=33.64 E-value=1e+02 Score=24.79 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhc--CCccchHHHHhhcCCCCccchhchhhccHHHHHHHHH
Q 047440 108 MDLLKLLFFVEINAIGLRKILKKFDKRF--GYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAIS 172 (619)
Q Consensus 108 ~~~~~l~~~~~lN~~~~~KIlKK~dK~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~i~ 172 (619)
...+.+++-..-|..=|-|++||-.|+. .....+.-+++++.+.|...... ..++.+...+|
T Consensus 27 ~q~~~I~~I~~Fnkd~Fi~LikKNk~~Ff~d~~~s~~eIk~rI~~YFsKQ~~~---~kiG~i~tIiE 90 (108)
T PF12630_consen 27 SQVRNIQRIINFNKDIFISLIKKNKKRFFSDIESSDSEIKRRILEYFSKQRRT---YKIGKILTIIE 90 (108)
T ss_dssp GGHHHHHHHHHS-HHHHHHHHHHHHHHH-TTSSS-THHHHHHHHHHTTGGGC------HHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcccH---HHHhhHHHHHh
Confidence 3345555666668888899999988886 34445566666666666553332 25666665554
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.60 E-value=4.1e+02 Score=30.48 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhhh
Q 047440 119 INAIGLRKILKKFDK 133 (619)
Q Consensus 119 lN~~~~~KIlKK~dK 133 (619)
.|....+++.|+.++
T Consensus 593 ~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 593 IHKAKEIKSIEDLVK 607 (771)
T ss_pred ccHHHHHHHHHHHHH
Confidence 555566666555544
No 417
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=33.55 E-value=2.8e+02 Score=31.79 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 047440 96 MTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFD 132 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~d 132 (619)
...+.+.+.++.+|+..-..+....-.-.++-|||+.
T Consensus 442 l~~~s~~l~~~a~e~~~~~~~~~~~e~~i~~~L~~~g 478 (764)
T TIGR02865 442 LKGVAESVEDIAKEINLEIVFHQLLEEKIIRALNKNG 478 (764)
T ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHCC
Confidence 4455566677777776666665555555566666553
No 418
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.33 E-value=4.4e+02 Score=28.68 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 047440 102 AYRAAGMDLLKLLFFVEINAIGLRKILKKFDK 133 (619)
Q Consensus 102 ~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK 133 (619)
+..+++.+...| ++..|++|+--|.+|-.+
T Consensus 165 rvqeIh~~~~~L--l~~~~~~Ag~eime~M~~ 194 (655)
T KOG3758|consen 165 RVQEIHDNCRLL--LQTPNQTAGLEIMEKMAL 194 (655)
T ss_pred HHHHHHHHHHHH--HhccchhhHHHHHHHHHH
Confidence 444555555544 234556666666665443
No 419
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=33.31 E-value=1.4e+02 Score=22.18 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 047440 42 QDRRHVLKDFSRMLDNQIEKI 62 (619)
Q Consensus 42 ~~~~~~~~~F~~~l~~e~~kv 62 (619)
+.++.....|+..++.|++|.
T Consensus 42 DmPe~l~~~~~~QideeV~~L 62 (79)
T PF10398_consen 42 DMPEHLNMAFLAQIDEEVEKL 62 (79)
T ss_dssp ---TTS-HHHHHHHHHHHHHH
T ss_pred cCcccccHHHHHHHHHHHHHH
Confidence 344445577888888888773
No 420
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.21 E-value=2.4e+02 Score=33.93 Aligned_cols=39 Identities=5% Similarity=-0.030 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 554 GLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 554 ~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
+.++++|.++.. .+...+|.-...++.+++.+++++++.
T Consensus 141 ~gGGIIG~lLs~-lL~~LfG~vGa~LILLlllLIGLiLlT 179 (1355)
T PRK10263 141 ASGGVIGSLLST-TLQPLLHSSGGTIALLCVWAAGLTLFT 179 (1355)
T ss_pred cccchHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 346666666655 666666765555555555555555443
No 421
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=33.15 E-value=7.2e+02 Score=27.69 Aligned_cols=52 Identities=8% Similarity=-0.081 Sum_probs=30.6
Q ss_pred chhHHhhhcchhhHHhccCchhhHHHHHHhhhhhhc--c-chhhhhHHHHHHHHH
Q 047440 4 FGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEV--G-AQDRRHVLKDFSRML 55 (619)
Q Consensus 4 Fg~~l~~~~~~ew~~~yi~Y~~lKk~i~~~~~~~~~--~-~~~~~~~~~~F~~~l 55 (619)
|...+.+....-+-..+.|=+.|+.++..+-.+..+ | +.-+++...++++.|
T Consensus 80 F~~El~~Rl~~r~lP~~~d~~~l~~lf~~lF~~~~D~~Wl~ai~~~~w~~L~~lL 134 (643)
T PF10136_consen 80 FFSELSRRLYERLLPAPPDPNDLSDLFNLLFPRPSDAEWLEAIPDETWLRLFELL 134 (643)
T ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHCCCCCcHHHHHhCCHHHHHHHHHHh
Confidence 445555555555556677888888888876432221 1 122233457788888
No 422
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=33.10 E-value=4.1e+02 Score=24.85 Aligned_cols=66 Identities=8% Similarity=0.115 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcC
Q 047440 57 NQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFG 136 (619)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~ 136 (619)
.||++=|+|......|+..+.+..+++.+.+ +..+.+-..+.+.- ..-=...|.++||+.-|...
T Consensus 46 ~eLk~qnkli~K~l~ei~~~qd~reK~~~~I------------~ssL~eTtkdf~~~---~~k~~~dF~~~Lq~~Lk~V~ 110 (230)
T PF03904_consen 46 QELKRQNKLIIKYLSEIEEKQDIREKNLKEI------------KSSLEETTKDFIDK---TEKVHNDFQDILQDELKDVD 110 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence 5566656666666666666666655554443 22332222222221 33345678888888877763
Q ss_pred C
Q 047440 137 Y 137 (619)
Q Consensus 137 ~ 137 (619)
+
T Consensus 111 t 111 (230)
T PF03904_consen 111 T 111 (230)
T ss_pred h
Confidence 3
No 423
>PRK14147 heat shock protein GrpE; Provisional
Probab=33.04 E-value=3.6e+02 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhhhc
Q 047440 122 IGLRKILKKFDKRF 135 (619)
Q Consensus 122 ~~~~KIlKK~dK~~ 135 (619)
.|+.-|.|++.+.+
T Consensus 97 ~Gv~mi~k~l~~~L 110 (172)
T PRK14147 97 DGLELTYKQLLKVA 110 (172)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666655
No 424
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.90 E-value=4.1e+02 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.9
Q ss_pred HHhccCchhhHHHHHHhhhhhh
Q 047440 17 QSYYINYKLMKKKVKQYAQQIE 38 (619)
Q Consensus 17 ~~~yi~Y~~lKk~i~~~~~~~~ 38 (619)
..++++++.|.+++|....+..
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~ 177 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENE 177 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHH
Confidence 4689999999999998876443
No 425
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=32.83 E-value=2.6e+02 Score=25.05 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=27.2
Q ss_pred hhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHH
Q 047440 284 VCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFI 324 (619)
Q Consensus 284 ~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i 324 (619)
+.|+..-++.+|.-.|.-+...+.+. |-+.+++...+..+
T Consensus 57 ~~GL~lFl~~VGl~aG~~F~~~l~~~-G~~~~~~~~~i~~~ 96 (169)
T PF06826_consen 57 QLGLALFLAAVGLSAGPGFFSSLKRG-GLKLLLLGVIITLV 96 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 46778888888988888888777655 66655544443333
No 426
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=32.64 E-value=6.4e+02 Score=26.93 Aligned_cols=48 Identities=8% Similarity=-0.016 Sum_probs=33.8
Q ss_pred hhhhhhhccCc-cchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceec
Q 047440 356 VNRRYISDCVP-LKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTF 406 (619)
Q Consensus 356 ~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w 406 (619)
.--..+.+.+| +++|+..+|-+....++..++..++++.+...+ ||.+
T Consensus 286 ~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~---Gw~~ 334 (472)
T TIGR00769 286 TWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKY---GWLT 334 (472)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHH
Confidence 33455566664 467899999998888888877777777776665 4554
No 427
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.11 E-value=3.7e+02 Score=28.13 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=19.8
Q ss_pred hhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 358 RRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 358 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
.+++++..+. ||...+..-...++-..+..-.+|-+....|
T Consensus 315 ~Alvg~fy~~--rGal~saaI~vYAlTs~i~GY~~gs~Y~r~g 355 (593)
T KOG1277|consen 315 LALVGVFYTE--RGALLSAAIVVYALTSPINGYVSGSFYARLG 355 (593)
T ss_pred HHHHhhhhcc--chHHHHHHHHHHHhcccccccccceeeehhc
Confidence 3444555543 6666555555555444444444444433333
No 428
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=31.84 E-value=1.7e+02 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047440 67 LEQQGLLASRLARLREQHDALL 88 (619)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ 88 (619)
.+...++..|++.|+++++++.
T Consensus 95 k~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 95 REEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777777776653
No 429
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.78 E-value=2.9e+02 Score=27.49 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 047440 104 RAAGMDLLKLLFFVEINAIGLRKILKKFDKR 134 (619)
Q Consensus 104 ~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~ 134 (619)
.++...+.+++.|.+ .+-+|-|||..
T Consensus 315 eNLiEalLE~QAYAD-----vqavLakYDdi 340 (556)
T KOG3807|consen 315 ENLLEALLELQAYAD-----VQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhccc
Confidence 334455566666665 45689999944
No 430
>PF06631 DUF1154: Protein of unknown function (DUF1154); InterPro: IPR009535 This entry represents group a 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta conserved site.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0006629 lipid metabolic process
Probab=30.84 E-value=34 Score=23.08 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhhc
Q 047440 121 AIGLRKILKKFDKRF 135 (619)
Q Consensus 121 ~~~~~KIlKK~dK~~ 135 (619)
.-||.|++||++|-+
T Consensus 17 ~K~y~Kl~KKq~KEl 31 (47)
T PF06631_consen 17 HKAYVKLLKKQQKEL 31 (47)
T ss_pred hHHHHHHHHHHHHHH
Confidence 357889999999876
No 431
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=30.43 E-value=2.6e+02 Score=21.76 Aligned_cols=54 Identities=17% Similarity=0.394 Sum_probs=31.9
Q ss_pred hhhHHHHHHhhhhhhccchhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 047440 24 KLMKKKVKQYAQQIEVGAQDRRHVLKDFSR---MLDNQIEKIVLFLLEQQGLLA-SRLARLRE 82 (619)
Q Consensus 24 ~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~---~l~~e~~kv~~f~~~~~~~~~-~~~~~~~~ 82 (619)
+.||+.|+..+...+... ....|-- .|..|+.+...||...+.|.. ..+..|++
T Consensus 27 ~~L~eEI~~Lr~qve~nP-----evtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNP-----EVTRFAMENIRLREELRRLQSFYVEGEREMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 778888887765433221 1233432 577888899999866555544 23444443
No 432
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=30.36 E-value=3.8e+02 Score=29.33 Aligned_cols=122 Identities=11% Similarity=0.193 Sum_probs=69.2
Q ss_pred hhhHHhccCchhhHHHHHHhhhhh-----hc--cchhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 14 QEWQSYYINYKLMKKKVKQYAQQI-----EV--GAQDRRHVLKDFSRMLDNQI--EKIVLFLLEQQGLLASRLARLREQH 84 (619)
Q Consensus 14 ~ew~~~yi~Y~~lKk~i~~~~~~~-----~~--~~~~~~~~~~~F~~~l~~e~--~kv~~f~~~~~~~~~~~~~~~~~~~ 84 (619)
++|...|-.|+.--+.+.+.-... +. ..++--.....|-..+.++. ..+...|..-...+.+.++.+++..
T Consensus 294 ~~w~~~~~~f~~~i~~lE~~l~~~l~~~f~~~~s~~~~~~ll~~f~~L~~Rp~I~~~l~~~~~~ll~~~~~ei~~~~~~f 373 (579)
T PF08385_consen 294 EEWERDFSEFRERIEDLERRLANILRQAFDDCSSPEEAFRLLQKFKSLLNRPRIRKALQEKYEQLLQQFKEEIDQLKKIF 373 (579)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378887777765443333221110 00 11122223456776777766 5566666666777777777777777
Q ss_pred HHHh-----cCCC-----h------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 85 DALL-----QQPD-----I------SQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 85 ~~~~-----~~~~-----~------~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
+... ..+. + --...+..++......+..+....-.+.....++.+||++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~ 440 (579)
T PF08385_consen 374 DNQKEKSETDNPPLPRNLPPVAGAIIWARQLERRIKEPMQRLKSLLGPDWLDSPEGKELKQKYNELL 440 (579)
T ss_pred HhccccccccccccccCCcHHHHHHHHHHHHHHHHhHHHHHHHHhccchhhcchhHHHHHHHHHHHH
Confidence 6654 1111 0 113355556666656666655455677788888888888654
No 433
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=30.35 E-value=7.3e+02 Score=26.88 Aligned_cols=28 Identities=32% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 108 MDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 108 ~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
..+..=..|.+--..+.+++.|||||-+
T Consensus 391 ~~~~~~~gF~es~~~~~~~~~~~fde~~ 418 (772)
T KOG2203|consen 391 KALKATEGFSESVADGKQSCEKKFDEEC 418 (772)
T ss_pred hccccccchHHHHHHHHHHHHHHHHhhh
Confidence 3344445689999999999999999876
No 434
>PRK14157 heat shock protein GrpE; Provisional
Probab=30.35 E-value=4e+02 Score=25.12 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=7.7
Q ss_pred HHHHHHHhhhhhc
Q 047440 123 GLRKILKKFDKRF 135 (619)
Q Consensus 123 ~~~KIlKK~dK~~ 135 (619)
++.-|.||+.|.+
T Consensus 152 ~~~~i~k~l~~vL 164 (227)
T PRK14157 152 SFKAVAAKIDKAF 164 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666555
No 435
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=30.04 E-value=3.1e+02 Score=26.88 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.9
Q ss_pred ccCchhhHHHHH
Q 047440 20 YINYKLMKKKVK 31 (619)
Q Consensus 20 yi~Y~~lKk~i~ 31 (619)
..||++|++..+
T Consensus 192 ~~~y~~l~~~f~ 203 (284)
T PF12805_consen 192 HYDYEELREQFK 203 (284)
T ss_pred cccHHHHHHHhc
Confidence 345555555444
No 436
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.71 E-value=4e+02 Score=31.21 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=5.8
Q ss_pred hhhhccchHHH
Q 047440 567 YISNMFEDRQI 577 (619)
Q Consensus 567 ~l~d~~g~r~~ 577 (619)
.++|-++|+..
T Consensus 1022 VFMD~vNRKi~ 1032 (1074)
T KOG0250|consen 1022 VFMDMVNRKIS 1032 (1074)
T ss_pred HHHHHHHHHHH
Confidence 34555565544
No 437
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=29.58 E-value=6.4e+02 Score=25.93 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------hhHHHHHHHHHHHHHHHHHHHHhHH
Q 047440 51 FSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPD------------ISQMTELREAYRAAGMDLLKLLFFV 117 (619)
Q Consensus 51 F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (619)
.+..|+.|=+-+.+=.-.+..++...-+.|++++++-...+. .+....++..+..+..|+..|++|.
T Consensus 191 lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l 269 (552)
T KOG2129|consen 191 LENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYL 269 (552)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444333333444444444445555443222111 2234455566666778888888874
No 438
>PRK14143 heat shock protein GrpE; Provisional
Probab=29.48 E-value=5e+02 Score=24.72 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 047440 124 LRKILKK 130 (619)
Q Consensus 124 ~~KIlKK 130 (619)
|.|+|+|
T Consensus 158 l~~~L~k 164 (238)
T PRK14143 158 LVDVLKR 164 (238)
T ss_pred HHHHHHH
Confidence 3333333
No 439
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=29.19 E-value=2.4e+02 Score=30.30 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=6.8
Q ss_pred chhhHHHHHHhh
Q 047440 23 YKLMKKKVKQYA 34 (619)
Q Consensus 23 Y~~lKk~i~~~~ 34 (619)
|+++|+.+-++.
T Consensus 379 ~~~Ik~YL~~ls 390 (533)
T COG1283 379 YEEIKLYLARLS 390 (533)
T ss_pred HHHHHHHHHHhc
Confidence 555666655554
No 440
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=29.07 E-value=3e+02 Score=26.20 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=10.1
Q ss_pred cCchhhHHHHHHhhh
Q 047440 21 INYKLMKKKVKQYAQ 35 (619)
Q Consensus 21 i~Y~~lKk~i~~~~~ 35 (619)
+|.++|++.|+.-..
T Consensus 136 iD~~kl~~Al~~np~ 150 (239)
T PF07195_consen 136 IDETKLDKALAENPD 150 (239)
T ss_pred EeHHHHHHHHhhCHH
Confidence 577778887775443
No 441
>COG2119 Predicted membrane protein [Function unknown]
Probab=29.06 E-value=3.8e+02 Score=24.32 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhh-HhhccChHHHHHHhCCcc-chhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440 249 SLLLNLANTFLYMVNT-YIIVPTADDYSMSLGAAA-TVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL 322 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~-~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~ 322 (619)
.+...+...|+.-++. +-+..+ .+..+.+... -.+|- .....++..++-+.+.++++|+..|.+-.++.++
T Consensus 101 ~f~~tfi~~FlaE~GDKTQiATI--aLaA~~~~~~~V~~Gt-~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aall 173 (190)
T COG2119 101 VFVTTFITFFLAELGDKTQIATI--ALAADYHSPWAVFAGT-TLGMILASVLAVLLGKLIAGKLPERLLRFIAALL 173 (190)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH--HHhhcCCCceeeehhh-HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4444445555444432 222211 1334455422 22332 3334566777788888999999988877555443
No 442
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=29.00 E-value=6.2e+02 Score=25.64 Aligned_cols=27 Identities=11% Similarity=-0.091 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047440 97 TELREAYRAAGMDLLKLLFFVEINAIG 123 (619)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~lN~~~ 123 (619)
..+.....++.+..+.|..|.+++...
T Consensus 155 ~~l~k~~k~l~e~~~~l~a~re~fL~~ 181 (377)
T KOG2896|consen 155 VKLQKQLKSLIELRNELVAKRELFLEQ 181 (377)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhHhH
Confidence 344455556666667777777776554
No 443
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=28.75 E-value=3.1e+02 Score=21.97 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 62 IVLFLLEQQGLLASRLARLREQHD 85 (619)
Q Consensus 62 v~~f~~~~~~~~~~~~~~~~~~~~ 85 (619)
+|.=-..++.++.+....+...++
T Consensus 29 mN~~~~~kY~~~~~~~~~l~~~~~ 52 (99)
T PF10046_consen 29 MNKATSLKYKKMKDIAAGLEKNLE 52 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 444
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=28.68 E-value=1.9e+02 Score=30.41 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHH-HHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccC
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYS-MSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSY 311 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~G 311 (619)
.+..+-.++.+++..+..| .+. .++|++..+...+.++-.+...++.++--....+.|
T Consensus 19 ~~lglQH~lamfg~~V~VP---livg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g 77 (451)
T COG2233 19 LLLGLQHLLAMFGATVLVP---LLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGG 77 (451)
T ss_pred HHHHHHHHHHHHhcchHhh---HHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 3344444444444444433 333 358999999999999999998888887765443343
No 445
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=28.67 E-value=2.8e+02 Score=21.58 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 047440 66 LLEQQGLLASRLARLR 81 (619)
Q Consensus 66 ~~~~~~~~~~~~~~~~ 81 (619)
|..|...+..|+..+.
T Consensus 62 y~~KL~~ikkrm~~l~ 77 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLH 77 (92)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 446
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=28.47 E-value=5.8e+02 Score=25.10 Aligned_cols=13 Identities=15% Similarity=-0.133 Sum_probs=8.1
Q ss_pred cchhhhHhHHHHH
Q 047440 367 LKIRMQASAGFVS 379 (619)
Q Consensus 367 ~~~r~~~~~~~~~ 379 (619)
+..|....+....
T Consensus 214 ~~~R~~lLg~~vg 226 (299)
T PF05884_consen 214 GTNRQKLLGIVVG 226 (299)
T ss_pred CcchHHHHHHHHH
Confidence 5577777765443
No 447
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=28.33 E-value=6e+02 Score=25.22 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=49.9
Q ss_pred HHHHHhhhhhhhccccCchhHHHHHHHHH--HHHHHHHHhhccCcHHHHHHHHHHhhccCcchhhhhhhhccCccchhhh
Q 047440 295 AQVFSSVYFSAWSNRSYFKPLVFSSIVLF--IGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQ 372 (619)
Q Consensus 295 ~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~--i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~i~~~~~~~~r~~ 372 (619)
.-++..-++|.+++|-|.-.+=+=++... ....+... ...++|.-++.-.+.|...+ ...++++.....++--.
T Consensus 19 tPLllaaLG~l~sERsGVlNIglEG~M~~gAf~~~~~~~--~t~spw~gl~~a~l~g~l~~--ll~a~~ti~l~~nqiis 94 (304)
T COG1079 19 TPLLLAALGGLFSERSGVLNIGLEGIMLLGAFSGALFAY--GTGSPWLGLLAAALVGALFG--LLHAFLTIKLRANQIIS 94 (304)
T ss_pred HHHHHHHHHHHHHHHhceeeechhhHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHH--HHHHHHHHhhccccchh
Confidence 34455667888999988655433222211 11111111 12566665555455444333 34445555555555556
Q ss_pred HhHHHHHHHHHHhHHHHHHhhhh
Q 047440 373 ASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 373 ~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
..++...+.++...++..+.+.-
T Consensus 95 G~alnl~a~Glt~fl~~~~~~~~ 117 (304)
T COG1079 95 GLALNLLASGLTAFLGQSIFGQP 117 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 66666666666666655554444
No 448
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.22 E-value=4.3e+02 Score=23.49 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH----HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH
Q 047440 52 SRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQ----MTELREAYRAAGMDLLKLLF-FVEINAIGLRK 126 (619)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~-~~~lN~~~~~K 126 (619)
...++.|+..+ .++..++....+.++.++..+...+..++ ...+.+.+.++-..|..|++ ...++-.-..|
T Consensus 74 l~~ld~ei~~L----~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~ 149 (169)
T PF07106_consen 74 LAELDAEIKEL----REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEK 149 (169)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34455554442 23556677777778888888777665433 23455555555555555554 11234445556
Q ss_pred HHHhhhhh
Q 047440 127 ILKKFDKR 134 (619)
Q Consensus 127 IlKK~dK~ 134 (619)
+-|.|+|+
T Consensus 150 ~~~~~~~~ 157 (169)
T PF07106_consen 150 LEKEYKKW 157 (169)
T ss_pred HHHHHHHH
Confidence 66666554
No 449
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=27.95 E-value=1.8e+02 Score=20.20 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhhhhhhccc-cCchhHH-HHHHHHH
Q 047440 291 AMAIAQVFSSVYFSAWSNR-SYFKPLV-FSSIVLF 323 (619)
Q Consensus 291 ~~~~~~~i~~~~~G~l~Dr-~Grr~~~-~~~~~~~ 323 (619)
...++.++.....|+..|+ +|..|.. +.++++.
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG 42 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLG 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3455566677788888887 7776644 4444433
No 450
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.62 E-value=6.9e+02 Score=27.98 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047440 55 LDNQIEKIVLFLLEQQGLLASRLARLREQHDALL 88 (619)
Q Consensus 55 l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~ 88 (619)
++.-++.+..-......++..+++.++.+++++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~ 411 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVD 411 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443233445566666666666665543
No 451
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=27.57 E-value=7.5e+02 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.021 Sum_probs=23.6
Q ss_pred ccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 366 PLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 366 ~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
.+.+.+-..++++++.+.|.+.-|+..|..
T Consensus 18 ~~~d~~W~l~l~GTAIGAGmLfLPI~~g~~ 47 (443)
T PRK13629 18 RKSDTTWTLGLFGTAIGAGVLFFPIRAGFG 47 (443)
T ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 445667778889999999999888887754
No 452
>PRK14155 heat shock protein GrpE; Provisional
Probab=27.12 E-value=4.8e+02 Score=24.30 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhhhc
Q 047440 121 AIGLRKILKKFDKRF 135 (619)
Q Consensus 121 ~~~~~KIlKK~dK~~ 135 (619)
+.|+.-|.|++.+.+
T Consensus 96 ~~Gvemi~k~~~~~L 110 (208)
T PRK14155 96 IIGVEMTEKELLGAF 110 (208)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357888888887776
No 453
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.05 E-value=1.7e+02 Score=23.48 Aligned_cols=15 Identities=13% Similarity=0.479 Sum_probs=6.3
Q ss_pred HHHHHHhhhhccchH
Q 047440 561 NIIVGSYISNMFEDR 575 (619)
Q Consensus 561 ~~~~g~~l~d~~g~r 575 (619)
+.++|.|+-.+++..
T Consensus 59 G~~lG~WLD~~~~t~ 73 (100)
T TIGR02230 59 GVAVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHHHhhcCCC
Confidence 333442444445443
No 454
>PHA03332 membrane glycoprotein; Provisional
Probab=26.92 E-value=5.2e+02 Score=30.19 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 50 DFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 50 ~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
.--..|+..++.||.=....++++++|+.....+++.+..
T Consensus 923 kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ 962 (1328)
T PHA03332 923 KISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLAT 962 (1328)
T ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666677777777777777777777666666666544
No 455
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=26.80 E-value=2.3e+02 Score=31.24 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKI 127 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KI 127 (619)
...|++.||.|+.|.-.+-.-...|+.+||..-. .+..-+......+.....-..+...++|+|
T Consensus 333 l~s~verLddE~~KsLq~~D~hs~eYv~RL~dE~----------------~l~~l~~~~q~Y~e~~~~~~~~~r~~lrrl 396 (595)
T PF05470_consen 333 LVSFVERLDDEFTKSLQNIDPHSSEYVERLKDEQ----------------RLYNLIDRVQQYYERTGDEEALARVALRRL 396 (595)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhcHH----------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4679999999999999888888889988887611 122222223333333444467788888887
Q ss_pred HH---hhhhhc
Q 047440 128 LK---KFDKRF 135 (619)
Q Consensus 128 lK---K~dK~~ 135 (619)
-. |+|...
T Consensus 397 ehiYyK~~~~~ 407 (595)
T PF05470_consen 397 EHIYYKPDQVI 407 (595)
T ss_pred HHhhCCcHHHH
Confidence 76 555444
No 456
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.79 E-value=3.1e+02 Score=25.11 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 047440 68 EQQGLLASRLARLREQHDALLQQPDISQMTELREAY 103 (619)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (619)
++.++++++.++.+++.++..++.+.+..+++++.=
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~q 107 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456677777778777777776666666555555543
No 457
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.48 E-value=5.3e+02 Score=23.99 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhhhc
Q 047440 122 IGLRKILKKFDKRF 135 (619)
Q Consensus 122 ~~~~KIlKK~dK~~ 135 (619)
.|+.-|.|++.+.+
T Consensus 134 eGvemi~k~l~~vL 147 (208)
T PRK14154 134 DGMSLTLDLLHNTL 147 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666555
No 458
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=26.42 E-value=5.3e+02 Score=23.97 Aligned_cols=27 Identities=7% Similarity=-0.025 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 54 MLDNQIEKIVLFLLEQQGLLASRLARL 80 (619)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~ 80 (619)
..+.|+++.+++...-.+++..-++..
T Consensus 6 ~~E~ele~l~~~ikkLiK~ck~~i~a~ 32 (207)
T cd07602 6 EHEAELERTNKAIKELIKECKNLISAT 32 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555555554444443
No 459
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.38 E-value=5e+02 Score=25.98 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 047440 73 LASRLARLREQHD 85 (619)
Q Consensus 73 ~~~~~~~~~~~~~ 85 (619)
+.+.+..++.+.+
T Consensus 76 l~~el~~le~e~~ 88 (314)
T PF04111_consen 76 LDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 460
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.20 E-value=1.2e+02 Score=27.42 Aligned_cols=8 Identities=25% Similarity=-0.176 Sum_probs=4.1
Q ss_pred hhhhhhhc
Q 047440 531 SSVVTTYY 538 (619)
Q Consensus 531 ~~~~~~~~ 538 (619)
+|-++...
T Consensus 30 fPD~YtRL 37 (197)
T PRK12585 30 LPDVYTRT 37 (197)
T ss_pred cCcHHHHh
Confidence 55555544
No 461
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=26.15 E-value=9.1e+02 Score=26.58 Aligned_cols=45 Identities=18% Similarity=0.020 Sum_probs=19.0
Q ss_pred cchhhHHHhhHHHHHHHHhhhhhhhcc---ccCchhHHHHHHHHHHHH
Q 047440 282 ATVCGIVIGAMAIAQVFSSVYFSAWSN---RSYFKPLVFSSIVLFIGN 326 (619)
Q Consensus 282 ~~~~g~~~s~~~~~~~i~~~~~G~l~D---r~Grr~~~~~~~~~~i~~ 326 (619)
....|........+..+..++.+...| +..|+...+.-.++++|.
T Consensus 123 ~~~lgya~~~v~f~~a~~~L~~~~~~~~~~~~~~~~~~~g~~flt~Gi 170 (576)
T TIGR00353 123 LLYMGYVGFSVAFAFALASLLRGELDSACARICRPWTLAAWSFLTLGI 170 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555554332 444444443333333433
No 462
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=25.99 E-value=54 Score=25.00 Aligned_cols=49 Identities=18% Similarity=0.374 Sum_probs=28.5
Q ss_pred chhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 13 IQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLA 74 (619)
Q Consensus 13 ~~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~ 74 (619)
+..|-..||+|=.- +.+. ..++ .++-...|..|++-+..=|..|+..+.
T Consensus 37 V~DwvnfYINYy~~-----~~~G----eqqe----qdrAlqel~qeL~tla~pFL~Kyr~fL 85 (89)
T PF09236_consen 37 VNDWVNFYINYYKK-----QMTG----EQQE----QDRALQELQQELNTLANPFLAKYRAFL 85 (89)
T ss_dssp HHHHHHHHHHHHHT-----T--S----SHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HhcC----ChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999531 1111 1112 234455566788877777776766554
No 463
>PRK14156 heat shock protein GrpE; Provisional
Probab=25.99 E-value=4.8e+02 Score=23.53 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhhhc
Q 047440 122 IGLRKILKKFDKRF 135 (619)
Q Consensus 122 ~~~~KIlKK~dK~~ 135 (619)
.|+.=|.|++.+.+
T Consensus 105 ~Gv~mi~k~l~~~L 118 (177)
T PRK14156 105 KGLEMVQESLIQAL 118 (177)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666666555
No 464
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.71 E-value=5.2e+02 Score=23.64 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 047440 164 LGAVVGAISRNLHELQD 180 (619)
Q Consensus 164 ~~~l~~~i~~~~~~l~~ 180 (619)
+..+...+++.+..+..
T Consensus 175 ~~~~~~~l~~~l~~l~~ 191 (204)
T PF04740_consen 175 IEELLQALQSGLSQLQS 191 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666654
No 465
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.66 E-value=57 Score=30.56 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=30.1
Q ss_pred HHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhh
Q 047440 346 LFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLL 395 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l 395 (619)
.-.|+|.|. +++.+-+.+.+| +......++..++..+..+.|-.++-++
T Consensus 179 MasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~ifi 229 (241)
T PF11299_consen 179 MASGVGSGSMMAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMSIFI 229 (241)
T ss_pred HHcCCcHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777766 666666677776 4555666666666666665555554444
No 466
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.62 E-value=9.6e+02 Score=26.68 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=60.5
Q ss_pred chhHHhhhcchhhHHhccCchh----hHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 4 FGKKLKERQIQEWQSYYINYKL----MKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLAR 79 (619)
Q Consensus 4 Fg~~l~~~~~~ew~~~yi~Y~~----lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~ 79 (619)
|+.-+...+.|-|...|-.|.. ||+.+.++..--+ +-....+.+ .++.|=.+|..+|...+++-.+.
T Consensus 74 f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~----q~~~~~~~l-----~sl~~k~~~vs~kt~~l~eace~ 144 (733)
T KOG2604|consen 74 FLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILD----QTNNALDTL-----LSLQKKFEFVSQKTSALHEACEQ 144 (733)
T ss_pred hhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-----HHHHHHHHHHhhhhHHHHHHHHH
Confidence 5666777788889998888864 5555554442211 111111222 23334455666677777766666
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH-hH----HHHHHHHHHHHHHhhhhh
Q 047440 80 LREQHDALLQQPDISQMTELREAYRAAGMDLLKLL-FF----VEINAIGLRKILKKFDKR 134 (619)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----~~lN~~~~~KIlKK~dK~ 134 (619)
|..+-.++.+ -.+.+.+.+ ....+|..+- ++ ...|..+|+--|-|-|--
T Consensus 145 l~~eq~kl~e-----lae~I~k~L-~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~c 198 (733)
T KOG2604|consen 145 LLEEQSKLSE-----LAEGIRKKL-HYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDEC 198 (733)
T ss_pred HHHHHHHHHH-----HHHHHHHhh-hhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHH
Confidence 6554433322 111222222 1222222221 00 457888999999988844
No 467
>PF03885 DUF327: Protein of unknown function (DUF327); InterPro: IPR005585 The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues, with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown. ; PDB: 2P61_A 2QUP_A.
Probab=25.55 E-value=4.5e+02 Score=22.84 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYR 104 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (619)
..|.+.|+..-++... .++.+-++.+.++-+.+.+.++.++....++.+.
T Consensus 27 ~~F~~~l~~~~~~~~~------e~L~~Ll~~I~~~G~~L~~~~t~~~l~~YK~~Vk 76 (147)
T PF03885_consen 27 SSFSDVLEQQEEEKSE------EELQELLDEIDEQGERLAESPTLENLKRYKELVK 76 (147)
T ss_dssp --HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 6788888555544332 4444444444444444544444444444444443
No 468
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.35 E-value=5.5e+02 Score=24.91 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 047440 26 MKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIV-LFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYR 104 (619)
Q Consensus 26 lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (619)
||-.||+-.......+ .|++.+. +.+..++.-+.+...++|+|+ ++.
T Consensus 73 LkakLkes~~~l~dRe---------------tEI~eLksQL~RMrEDWIEEECHRVEAQL-----------------ALK 120 (305)
T PF15290_consen 73 LKAKLKESENRLHDRE---------------TEIDELKSQLARMREDWIEEECHRVEAQL-----------------ALK 120 (305)
T ss_pred HHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHH
Q ss_pred HHHHHHHHHHhHHH
Q 047440 105 AAGMDLLKLLFFVE 118 (619)
Q Consensus 105 ~~~~~~~~l~~~~~ 118 (619)
|-..|+.+||+.++
T Consensus 121 EARkEIkQLkQvie 134 (305)
T PF15290_consen 121 EARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHH
No 469
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=25.28 E-value=4.1e+02 Score=28.53 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLL 67 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~ 67 (619)
...|.+.+|.=+++++.|-.
T Consensus 135 ~~~FV~llDlALD~l~~~s~ 154 (552)
T PF05482_consen 135 DSSFVELLDLALDHLEPFSE 154 (552)
T ss_pred cccHHHHHHHHHHHHHHHhh
Confidence 35799999999999988844
No 470
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=25.26 E-value=2.9e+02 Score=30.41 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHH
Q 047440 512 VQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNM-FEDRQILLASEIMVCIGIL 590 (619)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~-~g~r~~l~~~~~~~~i~~~ 590 (619)
..+..-.+-.++..+....+..|+...++.+...+.-.....+.......++.+ +++|. +||-.++.++.++..+|++
T Consensus 41 ~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~-~laD~f~gry~tI~~~s~i~~~G~~ 119 (571)
T KOG1237|consen 41 FILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA-FLADSFLGRYFTINIGSLISLLGLF 119 (571)
T ss_pred HHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444555566666677778888888888775555544444444444444444 89986 5777887777777776654
Q ss_pred h
Q 047440 591 F 591 (619)
Q Consensus 591 ~ 591 (619)
+
T Consensus 120 ~ 120 (571)
T KOG1237|consen 120 G 120 (571)
T ss_pred H
Confidence 3
No 471
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=25.25 E-value=3.1e+02 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=13.1
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHh
Q 047440 567 YISNMFEDRQILLASEIMVCIGILF 591 (619)
Q Consensus 567 ~l~d~~g~r~~l~~~~~~~~i~~~~ 591 (619)
++.|+-||...++.| +++++|-.+
T Consensus 296 y~~D~~gR~wa~lAG-~lCg~GNgl 319 (336)
T PF07168_consen 296 YLKDWNGRGWAFLAG-LLCGFGNGL 319 (336)
T ss_pred HhhccCCccHHHHHH-HHHhCCcee
Confidence 566777765554444 444444443
No 472
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.13 E-value=2.4e+02 Score=20.46 Aligned_cols=40 Identities=8% Similarity=0.305 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q 047440 546 VAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMV 585 (619)
Q Consensus 546 ~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~ 585 (619)
......+........+...|.++.+++++..-++.+.++.
T Consensus 25 ~~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iLi 64 (67)
T PF02659_consen 25 IALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIILI 64 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555545555555554444444443
No 473
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.13 E-value=1.1e+03 Score=27.41 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047440 54 MLDNQIEKIV-LFLLEQQGLLASRLARLREQHDALLQQPD---------ISQMTELREAYRAAGMDLLKLLFFVEINAIG 123 (619)
Q Consensus 54 ~l~~e~~kv~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~ 123 (619)
.||.|-..+. ..|.+..+|++..+..|+.+.....+.++ .+...+++..+.++-..+..|..=.+-+..-
T Consensus 215 kldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~ 294 (1200)
T KOG0964|consen 215 KLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKAR 294 (1200)
T ss_pred HHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 44556677777777777776655433211 2345567777788888888777766666677
Q ss_pred HHHHHHhhh
Q 047440 124 LRKILKKFD 132 (619)
Q Consensus 124 ~~KIlKK~d 132 (619)
=.||+||--
T Consensus 295 ~t~~~k~kt 303 (1200)
T KOG0964|consen 295 ETKISKKKT 303 (1200)
T ss_pred HHHHHHHhh
Confidence 779998763
No 474
>PHA03046 Hypothetical protein; Provisional
Probab=24.99 E-value=4.2e+02 Score=22.28 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcC
Q 047440 70 QGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFG 136 (619)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~ 136 (619)
.+++..|+-.+++...... +.+.....-+..|++-.+.=..++-.+-||-|=.||
T Consensus 86 iKd~vlRL~vlEK~~~~~i------------~~c~~~~~~i~RLE~H~ETlRk~Ml~L~kKIDvQTG 140 (142)
T PHA03046 86 IKDFVLRLLVLEKLFQLSI------------KRCKSLNNIIKRLENHTETVRKNMITLSKKIDVQTG 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 4566777877777665433 344555555566666666666778888888887765
No 475
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=24.84 E-value=6.4e+02 Score=24.42 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHH
Q 047440 56 DNQIEKIVLFLLEQ------QGLLASRLARLREQHDALLQQPDISQMTELRE---AYRAAGMDLLKLLFFVEINAIGLRK 126 (619)
Q Consensus 56 ~~e~~kv~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~lN~~~~~K 126 (619)
.+|++|...|.-.- .--+..|+.+.+..+..+..+.+.+....+.+ .+.+=+.|-..||.-+.==-..+++
T Consensus 136 p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~ 215 (264)
T PF08687_consen 136 PNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSE 215 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35556655555433 23467888899988888876555555555544 4445556667788887777788888
Q ss_pred HHHhhh
Q 047440 127 ILKKFD 132 (619)
Q Consensus 127 IlKK~d 132 (619)
||-||-
T Consensus 216 iL~~~L 221 (264)
T PF08687_consen 216 ILARYL 221 (264)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 888774
No 476
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.75 E-value=9.3e+02 Score=27.17 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----HHHHHHhHHHHHH
Q 047440 52 SRMLDNQIEKIVLFLLEQQGL------LASRLARLREQHDALLQQPDISQMTELREAYRAAGM----DLLKLLFFVEINA 121 (619)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~lN~ 121 (619)
...|++|++| +..| +.++++.+.+.+...-.....+--..+++.+.++.. ++..+-+=..||.
T Consensus 556 a~~Lk~ei~k-------ki~e~~~~~~~kek~ea~~aev~~~g~s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~ 628 (762)
T PLN03229 556 AEKLKAEINK-------KFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEV 628 (762)
T ss_pred hhhhhHHHHH-------HHHHhcccHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchh
Confidence 5567777776 5555 677777766666552211112223455555555554 4455555555666
Q ss_pred HHH
Q 047440 122 IGL 124 (619)
Q Consensus 122 ~~~ 124 (619)
.+.
T Consensus 629 ~~~ 631 (762)
T PLN03229 629 IGV 631 (762)
T ss_pred hhh
Confidence 533
No 477
>PRK10869 recombination and repair protein; Provisional
Probab=24.57 E-value=5.6e+02 Score=28.03 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=20.9
Q ss_pred hcchhhHHhccCchhhHHHHHHhhhh
Q 047440 11 RQIQEWQSYYINYKLMKKKVKQYAQQ 36 (619)
Q Consensus 11 ~~~~ew~~~yi~Y~~lKk~i~~~~~~ 36 (619)
....+++..|=.|+.+|+.+++....
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~ 179 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQ 179 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999987654
No 478
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.18 E-value=4.9e+02 Score=22.82 Aligned_cols=57 Identities=7% Similarity=0.014 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 047440 50 DFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAA 106 (619)
Q Consensus 50 ~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
+-.+.=++||.|-+.=..+....+.++-+.|+.++.........+....|.+.++++
T Consensus 11 e~~ren~ReLRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~l 67 (208)
T KOG3231|consen 11 EVIRENNRELRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHL 67 (208)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 344444566666665555555556666666666666555434444444444444333
No 479
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=23.89 E-value=6e+02 Score=23.70 Aligned_cols=70 Identities=7% Similarity=0.092 Sum_probs=31.9
Q ss_pred cchhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 12 QIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDA 86 (619)
Q Consensus 12 ~~~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (619)
.+.+-+++-+...++|..++......+. .++..++|...++.=|..=-. ..+...+++..++..++.+++
T Consensus 20 ~ik~Ir~ktl~~ek~k~r~~~ei~a~~~----ee~~leey~~em~~lL~ekm~-Hveelr~iHadiN~men~ikq 89 (286)
T KOG4451|consen 20 LIKSIRSKTLFFEKFKERCRFEICAFTW----EEENLEEYELEMGVLLLEKMG-HVEELREIHADINEMENDIKQ 89 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777666654332222 222234444433322211000 023445555556655555444
No 480
>KOG2867 consensus Phosphotyrosyl phosphatase activator [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=23.86 E-value=5.6e+02 Score=25.81 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------hhHHH----HHHH--------HHH-HH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPD---------ISQMT----ELRE--------AYR-AA 106 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----~~~~--------~~~-~~ 106 (619)
..|+..++..++-...=+.....+-.+++-.+-++++++.+... +...+ .+.+ .+- ..
T Consensus 40 ~~fi~~ls~~I~g~~~~~~~p~s~~v~~l~~ild~l~~~i~e~P~~~~~~Rfgn~AyR~w~~kl~~~~~~ll~~~~p~~~ 119 (367)
T KOG2867|consen 40 IGFINDLSESIKGHRNTYSFPISEQVKRLMDILDQLDHIIDETPPIDGPQRFGNKAYRTWYEKLYEELPKLLDEALPSLK 119 (367)
T ss_pred HHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHHHHHHHcCCCCCChhhhcCHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 45777777777663332333334555555555555555443211 11111 1111 221 33
Q ss_pred HHHHHHHHhHH----------------HHHHHHHHHHHHhhh
Q 047440 107 GMDLLKLLFFV----------------EINAIGLRKILKKFD 132 (619)
Q Consensus 107 ~~~~~~l~~~~----------------~lN~~~~~KIlKK~d 132 (619)
.+.+.+|..|- |||+.+|-..|.|.-
T Consensus 120 ~~~v~El~~Yl~~SFGNs~RIDYGtGHEL~Fl~~L~~L~~~G 161 (367)
T KOG2867|consen 120 HEAVNELGQYLTESFGNSTRIDYGTGHELNFLFFLCALFKLG 161 (367)
T ss_pred HHHHHHHHHHHHhccCCcccccccchHHHHHHHHHHHHHHcc
Confidence 34556666664 899999999998864
No 481
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.83 E-value=3.9e+02 Score=27.22 Aligned_cols=8 Identities=13% Similarity=0.036 Sum_probs=3.1
Q ss_pred ccCchhhH
Q 047440 20 YINYKLMK 27 (619)
Q Consensus 20 yi~Y~~lK 27 (619)
+++|..++
T Consensus 305 ~~~~~~~~ 312 (373)
T COG5019 305 EIHEARLN 312 (373)
T ss_pred hccHHHHh
Confidence 33443333
No 482
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=23.66 E-value=4.6e+02 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 047440 99 LREAYRAAGMDLLKLLFFVEINAIGLRKILKK 130 (619)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK 130 (619)
+++--..+..|+.+|+ +..+..++.|=.|-
T Consensus 261 LEeLsrqLFLE~~eLr--~~ker~~~SkTfkG 290 (462)
T KOG2417|consen 261 LEELSRQLFLELVELR--QMKERVAFSKTFKG 290 (462)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHhhh
Confidence 3334445556666664 56788999988873
No 483
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.62 E-value=3.4e+02 Score=20.82 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047440 68 EQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKIL 128 (619)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIl 128 (619)
+...+++.++..|++.+..+.+ +.+..++....+-.+=.-|+.|+. |.+.-.+|+
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~-----Rve~Vk~E~~kL~~EN~~Lq~YI~-nLm~~s~v~ 70 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSD-----RVEEVKEENEKLESENEYLQQYIG-NLMSSSSVF 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhh
Confidence 3455677777777777776644 345555666666666677777765 445555554
No 484
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=23.58 E-value=6.2e+02 Score=23.81 Aligned_cols=10 Identities=10% Similarity=0.454 Sum_probs=5.6
Q ss_pred chhhHHHHHH
Q 047440 23 YKLMKKKVKQ 32 (619)
Q Consensus 23 Y~~lKk~i~~ 32 (619)
|+..||.|++
T Consensus 108 ~~~i~k~IkK 117 (224)
T cd07591 108 FPEINEAIKK 117 (224)
T ss_pred hhhHHHHHHH
Confidence 4555555554
No 485
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.55 E-value=6.2e+02 Score=23.75 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=4.8
Q ss_pred hhhHHHHHH
Q 047440 24 KLMKKKVKQ 32 (619)
Q Consensus 24 ~~lKk~i~~ 32 (619)
++||+..|-
T Consensus 46 ~eLk~qnkl 54 (230)
T PF03904_consen 46 QELKRQNKL 54 (230)
T ss_pred HHHHHhhHH
Confidence 456655553
No 486
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=23.54 E-value=3e+02 Score=24.17 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047440 50 DFSRMLDNQIEKIVLFLL 67 (619)
Q Consensus 50 ~F~~~l~~e~~kv~~f~~ 67 (619)
.--..+|.+++|+..|..
T Consensus 72 QIKdiMDKDFDKL~EFVE 89 (205)
T PF15079_consen 72 QIKDIMDKDFDKLHEFVE 89 (205)
T ss_pred HHHHHHhhhHHHHHHHHH
Confidence 344556666666666654
No 487
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=23.52 E-value=4.1e+02 Score=21.73 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCC
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARL--REQHDALLQQP 91 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~ 91 (619)
..|++.+..+.+| |.++..++..+++++ +.++..+.+++
T Consensus 41 ~~F~~kV~~qH~~----~~~e~r~L~kKi~~l~veRkmr~Les~p 81 (109)
T PF11690_consen 41 YDFIDKVVDQHQR----YCDERRKLRKKIQDLRVERKMRALESHP 81 (109)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 4566555555555 444555666666665 55555554433
No 488
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.41 E-value=4.6e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDA 86 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (619)
.+=...++.|++++..=..+...+..++...+++++++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~ 129 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ 129 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445666777776644444444444444444444443
No 489
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.34 E-value=1.3e+02 Score=26.70 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 047440 69 QQGLLASRLARLREQH 84 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~ 84 (619)
|++..++|=.-||.++
T Consensus 8 klN~AIERnalLE~EL 23 (166)
T PF04880_consen 8 KLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3444444444444444
No 490
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=23.26 E-value=4.5e+02 Score=22.07 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 047440 57 NQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFD 132 (619)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~d 132 (619)
+|+.||+.||..+.+++.+--+.+.+. ....+.+.....++ ..-.=..+.+.....-..+++.-|+++
T Consensus 30 ~e~T~ID~wFL~~i~~Iv~~e~~L~~~----~~~~~~~~L~~aK~----~GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 30 HELTKIDPWFLEQIKNIVDMEKELKEY----LNELDPELLRKAKR----LGFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHH----GGG--HHHHHHHHH----TT--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred HHHHCccHHHHHHHHHHHHHHHHHHHh----hccchHHHHHHHHH----cCCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 689999999999998888766666654 12122222222222 112223444445556666666666654
No 491
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.22 E-value=8e+02 Score=26.36 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHHH--HHHHHHH
Q 047440 95 QMTELREAYRAAG-MDLLKLLFFVEINA--IGLRKIL 128 (619)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~~l~~~~~lN~--~~~~KIl 128 (619)
...+++..+.+.- ++-++|..|.+|-- ++++|-.
T Consensus 150 qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqV 186 (772)
T KOG0999|consen 150 QRRRLRDELKEYKFREARLLSEYSELEEENISLQKQV 186 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3456666666653 78888899988743 3455443
No 492
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=23.08 E-value=5.1e+02 Score=26.68 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 047440 52 SRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMD 109 (619)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
|++|+.=++-+-.|-..+..++....-.+.+++..-.....-+....+++++.+++..
T Consensus 178 FrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~r 235 (414)
T KOG2662|consen 178 FRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSR 235 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 3467777777777777666666555444333332211112223334444444444433
No 493
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.89 E-value=9.4e+02 Score=29.39 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047440 51 FSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQ--QPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKIL 128 (619)
Q Consensus 51 F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIl 128 (619)
-...++.+++.+..=-.....++.++++.|+++.+.-.+ ..|......+++.+..+-.+|...+.+. -.+
T Consensus 726 ~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r--------~~V 797 (1201)
T PF12128_consen 726 LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERR--------AEV 797 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhH--------HHH
Confidence 334444445555544455666666777777776665322 2355677888888888888887777664 345
Q ss_pred Hhhhhhc
Q 047440 129 KKFDKRF 135 (619)
Q Consensus 129 KK~dK~~ 135 (619)
..|+++.
T Consensus 798 ~eY~~~~ 804 (1201)
T PF12128_consen 798 IEYEDWL 804 (1201)
T ss_pred HHHHHHH
Confidence 5555554
No 494
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=22.86 E-value=2.2e+02 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLR 81 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~ 81 (619)
..+=.+.+++|+.|=+.||.+....+.++.....
T Consensus 88 LAr~le~~~q~L~k~daf~Ke~larlEen~~e~y 121 (192)
T KOG4083|consen 88 LARDLEEKSQELKKQDAFYKEQLARLEENSSEFY 121 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456677889999999999988888877776555
No 495
>PRK03818 putative transporter; Validated
Probab=22.84 E-value=4.3e+02 Score=28.90 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=24.8
Q ss_pred hhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHH
Q 047440 284 VCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIV 321 (619)
Q Consensus 284 ~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~ 321 (619)
+.|+..-++.+|.-.|.-+...+....|.+.+++..++
T Consensus 436 ~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v 473 (552)
T PRK03818 436 ELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLI 473 (552)
T ss_pred HHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHH
Confidence 46777777777777777777666655666665544443
No 496
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=22.64 E-value=80 Score=21.58 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 107 GMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 107 ~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
...|.+|-+-..++-.=-.|||++|||..
T Consensus 16 ~dtLDeli~~~~I~p~La~kVL~~FDksi 44 (49)
T PF02268_consen 16 TDTLDELIQEGKITPQLAMKVLEQFDKSI 44 (49)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34446666677777777789999999975
No 497
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.55 E-value=1.3e+03 Score=28.06 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 92 DISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
+-+.....-+.+-++..++..++.-..+=......|--||++..
T Consensus 343 ~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~ 386 (1201)
T PF12128_consen 343 DIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLK 386 (1201)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556667777777777777777777788888887764
No 498
>PRK14149 heat shock protein GrpE; Provisional
Probab=22.54 E-value=6e+02 Score=23.26 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHH------HHHHH
Q 047440 50 DFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVE------INAIG 123 (619)
Q Consensus 50 ~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------lN~~~ 123 (619)
+=...|..|++...+-|.+..+++..=-++.+++.++.... ....+.+.+..+..+|..-.+... -=+.|
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~----a~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~G 118 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEY----AYEKIALDLLPVIDALLGALKSAAEVDKESALTKG 118 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHhHHHHHHhccccccchHHHHHH
Confidence 34556777777776666666555554333333333332221 112233333333333322221110 01456
Q ss_pred HHHHHHhhhhhc
Q 047440 124 LRKILKKFDKRF 135 (619)
Q Consensus 124 ~~KIlKK~dK~~ 135 (619)
+.=|+|++.+.+
T Consensus 119 v~mi~k~l~~vL 130 (191)
T PRK14149 119 LELTMEKLHEVL 130 (191)
T ss_pred HHHHHHHHHHHH
Confidence 666777776665
No 499
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.50 E-value=3.7e+02 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047440 97 TELREAYRAAGMDLLKL 113 (619)
Q Consensus 97 ~~~~~~~~~~~~~~~~l 113 (619)
..+-+++.++...++.|
T Consensus 71 ~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 71 DPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 500
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=22.42 E-value=3.1e+02 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047440 68 EQQGLLASRLARLREQHDALL 88 (619)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~ 88 (619)
+...++..|++.|.++++.+.
T Consensus 109 ~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 109 KDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566666777766666654
Done!