Query 047440
Match_columns 619
No_of_seqs 676 out of 3336
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 19:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 2.8E-28 9.6E-33 257.2 28.2 292 244-596 22-346 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.3E-28 1.5E-32 256.7 26.7 306 244-595 24-341 (451)
3 2gfp_A EMRD, multidrug resista 99.9 1.7E-26 5.7E-31 238.4 14.3 259 251-574 3-264 (375)
4 4gc0_A D-xylose-proton symport 99.9 2.6E-25 8.9E-30 238.2 18.2 323 245-593 9-360 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.9 2.9E-23 1E-27 222.2 20.6 324 249-594 14-373 (491)
6 2cfq_A Lactose permease; trans 99.8 6.6E-21 2.3E-25 199.4 14.8 288 250-596 9-310 (417)
7 2xut_A Proton/peptide symporte 99.8 9.1E-19 3.1E-23 188.9 18.2 168 251-429 15-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.2E-11 4.1E-16 130.1 13.9 174 248-430 252-433 (451)
9 2cfq_A Lactose permease; trans 99.2 3.8E-11 1.3E-15 125.1 11.0 155 271-436 243-405 (417)
10 3o7q_A L-fucose-proton symport 99.2 1.6E-10 5.4E-15 121.0 14.7 159 250-421 260-423 (438)
11 4gc0_A D-xylose-proton symport 99.1 3.3E-10 1.1E-14 120.5 15.1 180 255-437 284-469 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.1 4.3E-10 1.5E-14 119.7 11.7 171 256-435 291-476 (491)
13 2gfp_A EMRD, multidrug resista 98.7 3.5E-09 1.2E-13 108.3 3.8 148 249-398 200-352 (375)
14 2xut_A Proton/peptide symporte 98.5 1.8E-07 6.3E-12 100.1 8.1 166 268-434 319-506 (524)
15 3ghg_A Fibrinogen alpha chain; 78.4 16 0.00053 37.0 11.0 53 66-123 108-160 (562)
16 3sjb_C Golgi to ER traffic pro 78.0 12 0.0004 28.3 7.7 66 69-134 24-89 (93)
17 3okq_A BUD site selection prot 77.8 27 0.00094 28.5 13.0 81 49-129 9-89 (141)
18 1avo_B 11S regulator; proteaso 72.1 40 0.0014 27.9 10.3 69 14-82 17-85 (140)
19 3pp5_A BRK1, protein brick1; t 69.5 26 0.00088 25.1 7.3 40 48-87 18-57 (73)
20 3p8c_E Probable protein brick1 67.8 26 0.0009 25.2 7.1 40 48-87 18-57 (75)
21 2lf0_A Uncharacterized protein 65.7 26 0.00089 27.5 7.2 49 69-117 11-59 (123)
22 2akf_A Coronin-1A; coiled coil 64.1 17 0.00057 20.5 4.2 28 54-85 3-30 (32)
23 1deq_A Fibrinogen (alpha chain 53.0 1.3E+02 0.0044 29.2 11.2 53 58-115 103-155 (390)
24 2l5g_B Putative uncharacterize 49.1 41 0.0014 21.0 4.7 28 52-83 11-38 (42)
25 3lay_A Zinc resistance-associa 48.9 1.2E+02 0.0042 26.0 9.6 56 57-112 74-131 (175)
26 4egw_A Magnesium transport pro 46.6 1.3E+02 0.0045 28.0 10.7 66 59-131 162-227 (280)
27 4ev6_A Magnesium transport pro 46.5 1.1E+02 0.0036 29.6 10.3 67 59-132 162-228 (339)
28 3oja_B Anopheles plasmodium-re 46.1 1.8E+02 0.0061 30.5 12.9 38 98-135 548-585 (597)
29 3nvo_A Zinc transport protein 45.2 33 0.0011 31.9 6.1 65 59-131 153-217 (264)
30 2iub_A CORA, divalent cation t 45.2 1E+02 0.0035 30.1 10.0 63 60-129 187-249 (363)
31 1xaw_A Occludin; coiled-coil, 44.0 1.3E+02 0.0045 24.6 9.7 14 54-67 63-76 (140)
32 3t98_B Nucleoporin NUP58/NUP45 42.5 1.1E+02 0.0037 23.2 9.3 31 49-79 7-37 (93)
33 1z8u_A Alpha-hemoglobin stabil 42.0 24 0.00081 26.1 3.4 49 13-74 41-89 (102)
34 2yo3_A General control protein 40.5 1.1E+02 0.0038 28.1 8.3 52 58-114 206-257 (268)
35 3t98_B Nucleoporin NUP58/NUP45 40.0 1.2E+02 0.0041 22.9 7.6 27 63-89 7-33 (93)
36 2bbh_A Divalent cation transpo 39.8 80 0.0027 29.2 8.0 63 62-131 180-242 (269)
37 3vem_A Helicase protein MOM1; 38.4 1.4E+02 0.0048 23.3 8.4 27 50-76 61-87 (115)
38 2vkj_A TM1634; membrane protei 37.8 66 0.0022 23.9 5.1 21 49-69 74-98 (106)
39 3vlc_E Golgi to ER traffic pro 36.7 19 0.00064 27.2 2.2 60 71-130 33-92 (94)
40 2p2u_A HOST-nuclease inhibitor 33.7 1.1E+02 0.0039 26.1 7.1 34 49-82 33-66 (171)
41 1m1j_A Fibrinogen alpha subuni 33.7 3.7E+02 0.013 26.8 13.0 62 55-121 98-159 (491)
42 3iyk_A VP5; icosahedral virus; 33.6 3.9E+02 0.013 26.9 11.8 83 48-130 116-207 (526)
43 4ioe_A Secreted protein ESXB; 33.1 1.5E+02 0.005 21.9 12.0 33 57-89 12-44 (93)
44 3ghg_A Fibrinogen alpha chain; 31.5 2.9E+02 0.0099 28.1 10.2 33 54-86 110-142 (562)
45 3gwk_C SAG1039, putative uncha 30.9 1.7E+02 0.0057 21.9 9.8 61 58-118 12-79 (98)
46 2xus_A Breast cancer metastasi 30.8 1.1E+02 0.0039 19.9 5.6 26 64-89 21-46 (49)
47 1gqe_A Release factor 2, RF2; 30.1 3.9E+02 0.013 25.9 11.5 90 18-114 22-114 (365)
48 1z0k_B FYVE-finger-containing 29.7 1.3E+02 0.0044 21.3 5.4 34 81-114 33-66 (69)
49 3mov_A Lamin-B1; LMNB1, B-type 29.5 1.8E+02 0.0063 22.0 11.5 35 53-87 22-56 (95)
50 2pnv_A Small conductance calci 29.2 1.1E+02 0.0036 19.4 4.4 19 69-87 17-35 (43)
51 2hn1_A CORA, magnesium and cob 28.7 1.9E+02 0.0063 26.6 8.4 64 60-131 179-242 (266)
52 1m1j_B Fibrinogen beta chain; 28.4 4.2E+02 0.015 26.7 11.2 20 15-34 86-106 (464)
53 2fic_A Bridging integrator 1; 28.4 3.3E+02 0.011 24.6 11.0 22 112-134 135-156 (251)
54 4aw6_A CAAX prenyl protease 1 27.0 1.8E+02 0.0062 29.6 8.4 57 533-590 147-210 (482)
55 3sjb_C Golgi to ER traffic pro 27.0 1.9E+02 0.0066 21.7 6.2 41 17-62 19-61 (93)
56 3mq9_A Bone marrow stromal ant 26.4 3.9E+02 0.013 26.8 11.2 18 66-83 402-419 (471)
57 3twe_A Alpha4H; unknown functi 26.1 81 0.0028 16.7 3.8 15 70-84 10-24 (27)
58 3tul_A Cell invasion protein S 25.6 2.8E+02 0.0095 22.7 9.6 49 68-118 76-124 (158)
59 2g9p_A Antimicrobial peptide l 25.0 16 0.00055 19.2 0.1 14 302-315 2-15 (26)
60 3ci9_A Heat shock factor-bindi 23.4 1.5E+02 0.0053 19.2 4.5 26 62-87 18-43 (48)
61 1yzm_A FYVE-finger-containing 23.4 1.6E+02 0.0056 19.3 6.2 40 75-114 9-48 (51)
62 3arc_T Photosystem II reaction 22.9 1.1E+02 0.0039 17.8 3.3 15 423-437 15-29 (32)
63 3zbh_A ESXA; unknown function, 22.6 2.4E+02 0.008 20.9 11.2 30 58-87 13-42 (99)
64 3na7_A HP0958; flagellar bioge 22.0 2.8E+02 0.0096 25.3 8.1 10 126-135 176-185 (256)
65 4ani_A Protein GRPE; chaperone 21.7 4.2E+02 0.014 23.4 11.2 14 118-131 143-156 (213)
66 3n1e_A Vacuolar protein sortin 21.6 2.8E+02 0.0096 22.8 6.9 33 53-85 4-36 (141)
67 2d9d_A BAG family molecular ch 21.4 2.1E+02 0.0073 20.8 5.3 61 54-119 21-81 (89)
68 3fdq_A Motility gene repressor 20.3 2.4E+02 0.008 22.8 5.9 41 105-145 78-122 (170)
69 2de0_X Alpha-(1,6)-fucosyltran 20.2 2.9E+02 0.0099 28.5 8.5 36 48-86 61-96 (526)
70 1ugo_A BCL2-associated athanog 20.2 2.9E+02 0.01 21.1 8.1 41 72-112 22-62 (99)
71 3oao_A Uncharacterized protein 20.1 2.1E+02 0.0073 23.7 6.1 28 56-83 82-110 (147)
72 4dve_A Biotin transporter BIOY 20.1 1.5E+02 0.005 26.1 5.3 25 289-313 99-123 (198)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=2.8e-28 Score=257.18 Aligned_cols=292 Identities=12% Similarity=0.124 Sum_probs=234.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+++.+.++.+..++..++.....+.+|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||++++.+.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 34556666677777788888889999999999999999999999999999999999999999999999999998888765
Q ss_pred -HHHHHH---HHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh-
Q 047440 324 -IGNVMY---ALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ- 396 (619)
Q Consensus 324 -i~~~l~---~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~- 396 (619)
++.+++ .++ ++++.++++|++.|++.+. +...++++|++|+++|++++++.+.+.++|.++||++++++.
T Consensus 102 ~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 102 ALGAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhcccc---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788877 666 9999999999999999888 889999999999999999999999999999999999999997
Q ss_pred ccccccc------------------------eeccccchhHHHHHHHHHHHHHHHhhh-ccCCchhhhhhccccccCCCC
Q 047440 397 TNFKIYK------------------------LTFNQNTLPGWIMAVAWLFYLVWLCIS-FKEPSRDIEENHTQEESNAEP 451 (619)
Q Consensus 397 ~~~~~~~------------------------w~w~~~~~~~~~~~~~~~~~~~~~~~~-~pe~~~~~~~~~~~~~~~~~~ 451 (619)
...+ . |+| +|++.+++.++..++.++. .||+++..+.
T Consensus 179 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----------- 240 (438)
T 3o7q_A 179 SNVP--HQSQDVLDKMSPEQLSAYKHSLVLSVQT-----PYMIIVAIVLLVALLIMLTKFPALQSDNHS----------- 240 (438)
T ss_dssp TSSC--CCCHHHHHHSCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCCCTTTCCC-----------
T ss_pred cccc--cccccccccCCcchhhhhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHcCCcccccccc-----------
Confidence 4432 2 666 7776666655544443332 2333221000
Q ss_pred CcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhch
Q 047440 452 VDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSES 531 (619)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (619)
+........+++++++ ++.++..++..++..........+.
T Consensus 241 -------------------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (438)
T 3o7q_A 241 -------------------------------------DAKQGSFSASLSRLAR--IRHWRWAVLAQFCYVGAQTACWSYL 281 (438)
T ss_dssp -------------------------------------CSSTTSHHHHHHHHTT--CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------cccccchhhhHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111223344443 6778888888888888888888999
Q ss_pred hhh-hhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 532 SVV-TTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 532 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
|.| +.+.+|++..+++...++..++.+++.++.+ ++.||+|+|+.+..+.++.+++++++...+
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT-WLISRFAPHKVLAAYALIAMALCLISAFAG 346 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHcC
Confidence 999 8888899999999999999999999999988 999999999999988888888877666554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=4.3e-28 Score=256.73 Aligned_cols=306 Identities=13% Similarity=0.097 Sum_probs=239.6
Q ss_pred chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440 244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF 323 (619)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~ 323 (619)
+.+++.+...+++.++..++.....+.+|.+.+++ .+..+.|++.+++.++.+++++++|+++||+|||++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34566677777788888888888899999999999 99999999999999999999999999999999999998888765
Q ss_pred -HHHHHHHH----hhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 324 -IGNVMYAL----AYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 324 -i~~~l~~~----~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
++.+++++ + ++++.++++|++.|++.+. +...++++|++|+++|++++|+...+.++|.++||++++++.
T Consensus 103 ~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc---ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 8 9999999999999999887 889999999999999999999999999999999999999986
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCc
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDE 476 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (619)
...+ +|+| +|++.+++.++..++.++.+||+|+.......+ +...+.
T Consensus 180 ~~~g--~w~~-----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 226 (451)
T 1pw4_A 180 AWFN--DWHA-----ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE--------------------------EYKNDY 226 (451)
T ss_dssp HHTC--CSTT-----CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT--------------------------TTCCC-
T ss_pred HHhc--cHHH-----HHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh--------------------------hhcccc
Confidence 5542 2777 788888887777777778889887643220000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcc--hHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhh
Q 047440 477 DGDQEYDGSDETSEESHPPANS--IRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLG 554 (619)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 554 (619)
. + +.+.. ........+ .+..++ ++.++..++..++..+...++..++|.|+.+.+|++..+++++.++.+
T Consensus 227 --~-~--~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 298 (451)
T 1pw4_A 227 --P-D--DYNEK-AEQELTAKQIFMQYVLP--NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 298 (451)
T ss_dssp ------------------CCTHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred --c-c--cchhh-hhcccccccchHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 0 00000 000011111 122222 677788888888888888888899999999988999999999999999
Q ss_pred hhHHHHHHHHHHhhhhcc--chHHHHHHHHHHHH-HHHHhhccc
Q 047440 555 LTVLPVNIIVGSYISNMF--EDRQILLASEIMVC-IGILFSFHV 595 (619)
Q Consensus 555 ~~~~~~~~~~g~~l~d~~--g~r~~l~~~~~~~~-i~~~~~~~~ 595 (619)
++.+++.++.+ ++.||+ ++|+.+..+.++.+ ++++++...
T Consensus 299 ~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 299 YAGIPGTLLCG-WMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHH-HHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 99999999988 999999 99998887776665 666555544
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=1.7e-26 Score=238.42 Aligned_cols=259 Identities=15% Similarity=0.149 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMY 329 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~ 329 (619)
+++++..++..++.....+.+|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||++++.+.+.. ++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 4455666777778888899999999999999999999999999999999999999999999999888877765 888888
Q ss_pred HHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccceecc
Q 047440 330 ALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFN 407 (619)
Q Consensus 330 ~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~ 407 (619)
.++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++.+.+..+|.++||.+++++.+.. +|+|
T Consensus 83 ~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~- 155 (375)
T 2gfp_A 83 VTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW---NWRA- 155 (375)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH---HHHH-
T ss_pred HHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc---cHHH-
Confidence 888 8999999999999999887 888999999999999999999999999999999999999997654 5666
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCC
Q 047440 408 QNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDE 487 (619)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (619)
+|++.+++.++..++.++.+||+++..++
T Consensus 156 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 184 (375)
T 2gfp_A 156 ----CYLFLLVLCAGVTFSMARWMPETRPVDAP----------------------------------------------- 184 (375)
T ss_dssp ----HHHHHHHHHHHHHCCCCCSSCCCSTTTCC-----------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHCcccCCCCcc-----------------------------------------------
Confidence 78888887777766666777776542211
Q ss_pred CCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhHHHHHHHHHHh
Q 047440 488 TSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSY 567 (619)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~ 567 (619)
+.+...++++.++ +|+++...+..++.......+..+.|.|+.+.+|+++.++|.+.+..+++.+++..+.+ +
T Consensus 185 ----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~-~ 257 (375)
T 2gfp_A 185 ----RTRLLTSYKTLFG--NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG-R 257 (375)
T ss_dssp ----CCCTTTCSTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-T
T ss_pred ----cccHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0011122344444 66777778888888888888889999999998899999999999999999999998888 9
Q ss_pred hhhccch
Q 047440 568 ISNMFED 574 (619)
Q Consensus 568 l~d~~g~ 574 (619)
+.||.++
T Consensus 258 l~~r~~~ 264 (375)
T 2gfp_A 258 PNKRFST 264 (375)
T ss_dssp TTTHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=2.6e-25 Score=238.18 Aligned_cols=323 Identities=15% Similarity=0.119 Sum_probs=211.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCC--------ccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHH
Q 047440 245 YHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGA--------AATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLV 316 (619)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~ 316 (619)
+.+...++..++.++.+++.+++++.+|.+..+++. +..+.|++.+++.+|.++|++++|+++||+|||+++
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 334444555567778888889999999999887743 345689999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhh---------------ccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHH
Q 047440 317 FSSIVLF-IGNVMYALAY---------------DFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFV 378 (619)
Q Consensus 317 ~~~~~~~-i~~~l~~~~~---------------~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~ 378 (619)
+.+.++. ++.++++++. ..+++++++++|+++|+|.|. ++++++++|+.|+++|++..++.+
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~ 168 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence 8888765 8888888421 118999999999999999988 899999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCC--C-cch
Q 047440 379 SASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEP--V-DNS 455 (619)
Q Consensus 379 ~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~--~-~~~ 455 (619)
.+..+|.++++.++..+....+.....+.+|+.++.+..+. .+..++..+++||+|+....+.+.++..... . .+.
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIP-ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHH-HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhh-hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 99999999999998877443210000011123355544444 4445555678899998544321111100000 0 000
Q ss_pred hhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhh
Q 047440 456 ALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVT 535 (619)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (619)
..+....+. .......+...........++........++..+.......++.+++
T Consensus 248 ~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 248 LATQAVQEI------------------------KHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHHHH------------------------HHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHH------------------------HHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 000000000 00000000000011111134444444444444444444444444444
Q ss_pred hhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhc
Q 047440 536 TYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSF 593 (619)
Q Consensus 536 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~ 593 (619)
.+..+.+.........+.+++.+++.++.+ ++.||+|||+.++.+...++++++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 304 FKTLGASTDIALLQTIIVGVINLTFTVLAI-MTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccchhhHHHHHHHHHHHHHHHHH-HHHHhhcCcchhccchHHHHHHHHHHH
Confidence 445577777777777777888888888888 999999999999988877777766543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.90 E-value=2.9e-23 Score=222.23 Aligned_cols=324 Identities=12% Similarity=0.008 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHH------hCCccchhhHHHhhHHHHHHHHhhhhhhhccc-cCchhHHHHHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMS------LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNR-SYFKPLVFSSIV 321 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~Grr~~~~~~~~ 321 (619)
.++..++..++..++++...+.++.+..+ +|.+..+.|++.+++.++..++++++|+++|| +|||++++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 44555556666666666666666777664 89999999999999999999999999999999 899999988887
Q ss_pred HH-HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccch--hhhHhHHHHHHHHHHhHHHHHHhhhhh
Q 047440 322 LF-IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKI--RMQASAGFVSASALGMACGPALAGLLQ 396 (619)
Q Consensus 322 ~~-i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~i~~~l~ 396 (619)
+. ++.++++++ ++++.++++|++.|++.+. +...++++|++|+++ |+.++++++.+.++|.++||++++++.
T Consensus 94 ~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 94 LIMLGHIVLALP---FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HHHHHHHHHHSC---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 65 888888888 9999999999999999887 899999999999988 778888899999999999999999997
Q ss_pred ccccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCC------------
Q 047440 397 TNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQP------------ 464 (619)
Q Consensus 397 ~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 464 (619)
+.. +|+| +|++.++..++..++.++..|+..++.... .+ .....++........
T Consensus 171 ~~~---g~~~-----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~g~~l~~~~~~~~ 236 (491)
T 4aps_A 171 EAA---GYHV-----AFSLAAIGMFIGLLVYYFGGKKTLDPHYLR---PT---DPLAPEEVKPLLVKVSLAVAGFIAIIV 236 (491)
T ss_dssp HHS---CHHH-----HHHHHHHHHHHHHHHHHHHHHTTCCSCCSC---CS---CCCSHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred hhh---hHHH-----HHHHHHHHHHHHHHHHHHhCcccccccccC---CC---CccccchhHHHHHHHHHHHHHHHHHHH
Confidence 755 6777 788877666655555544434322211100 00 000000000000000
Q ss_pred -cccCCCCCCCCcCCCCCCC----C--CCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhchhhhhhh
Q 047440 465 -LLITSEEKPEDEDGDQEYD----G--SDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTY 537 (619)
Q Consensus 465 -~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (619)
..........+........ . ....... ..........+ ....+...+..++...........++.|..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4aps_A 237 VMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMIS--SVKVTSTEHLR--VVSYIPLFIAAVLFWAIEEQGSVVLATFAAE 312 (491)
T ss_dssp HHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH
T ss_pred HHHhccCcccccchhhhhHHHHHHHHHHHHHHhh--cccccHHHHHH--HHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 0000000000000000000 0 0000000 00000000000 1223344444555555566666778888888
Q ss_pred cccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHH-----HHHHHHHHHHHhhcc
Q 047440 538 YFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILL-----ASEIMVCIGILFSFH 594 (619)
Q Consensus 538 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~-----~~~~~~~i~~~~~~~ 594 (619)
.++.+....+......+++.+++..+.+ ++.||++||+... .+.++++++++++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 313 RVDSSWFPVSWFQSLNPLFIMLYTPFFA-WLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI 373 (491)
T ss_dssp SCCCSSSCSGGGTTHHHHHHHHHHHHHH-HHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred HhccCccCHHHHhccchHHHHHHHHHHH-HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 7788777778888888888888888888 8999999875543 666666666655443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.84 E-value=6.6e-21 Score=199.36 Aligned_cols=288 Identities=14% Similarity=0.130 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH-
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGN- 326 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~- 326 (619)
++......++..+..+...+.+|.+.++ +|.++.+.|++.+++.+++.++++++|+++||+|||++++.+.++. ++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~ 88 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3344445555666677888999998875 8999999999999999999999999999999999999988776543 321
Q ss_pred --HHHHHhhccCcH-HHHHHHHHHhhccCcc--hhhhhhhhccCcc--chhhhHhHHHHHHHHHHhHHHHHHhhhhhccc
Q 047440 327 --VMYALAYDFSSI-AVLLIGRLFCGFGSAR--AVNRRYISDCVPL--KIRMQASAGFVSASALGMACGPALAGLLQTNF 399 (619)
Q Consensus 327 --~l~~~~~~~~~~-~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~ 399 (619)
+.+.++ +.. ..++.++++.|++.+. +.....+.++.++ ++++..+|....+..+|.++||.+++++...
T Consensus 89 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~- 164 (417)
T 2cfq_A 89 PFFIFIFG---PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI- 164 (417)
T ss_dssp HHHHHTHH---HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 111222 111 1234556666666554 3333344444433 4567777888888899999999999998642
Q ss_pred cccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCCC
Q 047440 400 KIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGD 479 (619)
Q Consensus 400 ~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (619)
+|++ +|++.++..++..++ .+..|+++++..+ +.+..
T Consensus 165 ---~~~~-----~f~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------------~~~~~ 201 (417)
T 2cfq_A 165 ---NNQF-----VFWLGSGCALILAVL-LFFAKTDAPSSAT----------------------------------VANAV 201 (417)
T ss_dssp ---CSHH-----HHTTTTTTTTTHHHH-SCSSCCCCSCSSC----------------------------------SSSSS
T ss_pred ---chhH-----HHHHHHHHHHHHHHH-HHHcCcccccccc----------------------------------ccccc
Confidence 4555 676665553333333 2333332211000 00000
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhccc---ccchhHHHHHHHhhh
Q 047440 480 QEYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFG---WSTGAVAIFLACLGL 555 (619)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~ 555 (619)
+ . .......++..+.+ +++++..++..++....+..+..++|.|+.+.++ .+....++..++..+
T Consensus 202 ----~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 270 (417)
T 2cfq_A 202 ----G--A-----NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270 (417)
T ss_dssp ----S--S-----CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHH
T ss_pred ----c--c-----ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 0 0 00011222333333 5555555554444444445555567777766544 334556777777777
Q ss_pred hHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440 556 TVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF 596 (619)
Q Consensus 556 ~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~ 596 (619)
+.+++.++.+ +++||+|+|+++..+.++.+++++++...+
T Consensus 271 ~~~~~~~~~g-~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~ 310 (417)
T 2cfq_A 271 LNASIMFFAP-LIINRIGGKNALLLAGTIMSVRIIGSSFAT 310 (417)
T ss_dssp HHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH-HHHHHhcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888777 999999999998888887777766554433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.79 E-value=9.1e-19 Score=188.88 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHhhhHhhccChHHHHH-HhC------CccchhhHHHhhHHHHHHHHhhhhhhhcccc-CchhHHHHHHHH
Q 047440 251 LLNLANTFLYMVNTYIIVPTADDYSM-SLG------AAATVCGIVIGAMAIAQVFSSVYFSAWSNRS-YFKPLVFSSIVL 322 (619)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-Grr~~~~~~~~~ 322 (619)
+.+.+..++..++.+...+.++.+.. ++| .+..+.|++.+++.++..++++++|+++||+ |||++++.+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~ 94 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLI 94 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34445555666666666677777665 589 9999999999999999999999999999999 999998887766
Q ss_pred H-HHHHHHHHhhccC-cHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHH---HHHHHHHHhHHHHHHhhhh
Q 047440 323 F-IGNVMYALAYDFS-SIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAG---FVSASALGMACGPALAGLL 395 (619)
Q Consensus 323 ~-i~~~l~~~~~~~~-~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~i~~~l 395 (619)
. ++.++++++ + +++.++++|++.|++.+. +...++++|++|+++|+++.+. ...+.++|.++||++++++
T Consensus 95 ~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 95 YCVGHAFLAIF---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp HHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred HHHHHHHHHHh---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 888888888 8 999999999999999887 8899999999999999876666 8999999999999999999
Q ss_pred hccccccceeccccchhHHHHHHHHHHHHHHHhh
Q 047440 396 QTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCI 429 (619)
Q Consensus 396 ~~~~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~ 429 (619)
.+.. +|+| +|++.+++.++..++.++
T Consensus 172 ~~~~---g~~~-----~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 172 LKNF---GAAV-----AFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTS---CHHH-----HHHHHHHHHHHHHHHHHS
T ss_pred hccc---cHHH-----HHHHHHHHHHHHHHHHHH
Confidence 7654 5666 788777775555444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.31 E-value=1.2e-11 Score=130.13 Aligned_cols=174 Identities=13% Similarity=0.012 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhcccc--CchhHHHHHHHH-H
Q 047440 248 MSLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRS--YFKPLVFSSIVL-F 323 (619)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~--Grr~~~~~~~~~-~ 323 (619)
+.++...+..++..+........+|.+.++ +|.+..+.|++.++..++.+++.++.|+++||+ |||+++..+.+. .
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 344555555556666666677788888887 899999999999999999999999999999999 999887665543 3
Q ss_pred -HHHHHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHH-HhHHHHHHhhhhhccc
Q 047440 324 -IGNVMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASAL-GMACGPALAGLLQTNF 399 (619)
Q Consensus 324 -i~~~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~i~~~l~~~~ 399 (619)
++.+++.+. ...+.+.++++.++.|++.+. +...+++.|.+|++.|++++|+.+....+ |..+||.++|++.+..
T Consensus 332 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 332 TIATIVYWMN-PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHHHHTTSC-CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHh-cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444443333 113677788888888988766 67789999999999999999999999999 9999999999997765
Q ss_pred cccceeccccchhHHHHHHHHHHHHHHHhhh
Q 047440 400 KIYKLTFNQNTLPGWIMAVAWLFYLVWLCIS 430 (619)
Q Consensus 400 ~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~ 430 (619)
+ | ..+|++.+++.++..++.++.
T Consensus 411 g---~-----~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 411 G---W-----DGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp C---S-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred C---c-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3 3 447777777766666655544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.20 E-value=3.8e-11 Score=125.07 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=117.5
Q ss_pred hHHHHHH-hC---CccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhhccCcHHHHHHHH
Q 047440 271 ADDYSMS-LG---AAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAYDFSSIAVLLIGR 345 (619)
Q Consensus 271 ~~~~~~~-~g---~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~~~~~~~~l~~~r 345 (619)
+|.+..+ ++ .+....|++.++..++..++.++.|+++||+|||+++..+.+.. ++.++.++. ++.+.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 319 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---TSALEVVILK 319 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---CSHHHHHHHT
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence 5666554 33 23455688888888889999999999999999999887666554 555555555 6777787777
Q ss_pred HHhhccCcc--hhhhhhhhccCccchhhhHhHH-HHHHHHHHhHHHHHHhhhhhccccccceeccccchhHHHHHHHHHH
Q 047440 346 LFCGFGSAR--AVNRRYISDCVPLKIRMQASAG-FVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLF 422 (619)
Q Consensus 346 ~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~i~~~l~~~~~~~~w~w~~~~~~~~~~~~~~~~ 422 (619)
++.|++.+. +....+++|.+|++.|+.+.++ ++.+..+|.++||.++|++.+..+ +..+|++.+++.++
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--------~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--------FQGAYLVLGLVALG 391 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--------cHHHHHHHHHHHHH
Confidence 777777554 5667899999999999999998 488888999999999999876543 23467777777777
Q ss_pred HHHHHhhhccCCch
Q 047440 423 YLVWLCISFKEPSR 436 (619)
Q Consensus 423 ~~~~~~~~~pe~~~ 436 (619)
..++.++..||.++
T Consensus 392 ~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 392 FTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHTTSSCCSCT
T ss_pred HHHHHHhhhcCCCc
Confidence 76666666676544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.19 E-value=1.6e-10 Score=121.02 Aligned_cols=159 Identities=10% Similarity=0.000 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhhhHhhccChHHH-HHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 047440 250 LLLNLANTFLYMVNTYIIVPTADDY-SMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGN 326 (619)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~ 326 (619)
++...+..++...........+|.+ .++ +|.+..+.|++.+++.++.+++.++.|+++||+|||+++..+.+.. ++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 339 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444445555555556666777888 777 4999999999999999999999999999999999999887777655 666
Q ss_pred HHHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhccccccce
Q 047440 327 VMYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKL 404 (619)
Q Consensus 327 ~l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w 404 (619)
++..+. ++.+.++.. ++.|++.+. +...+++.|.+|++ ++.+.++.. ...+|..++|.+.|++.+..+ ++
T Consensus 340 ~~~~~~---~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~ 411 (438)
T 3o7q_A 340 LISAFA---GGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NI 411 (438)
T ss_dssp HHHHHC---CHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SS
T ss_pred HHHHHc---CCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--ch
Confidence 666666 666554444 777777766 88888989999866 888888776 567999999999999977653 24
Q ss_pred eccccchhHHHHHHHHH
Q 047440 405 TFNQNTLPGWIMAVAWL 421 (619)
Q Consensus 405 ~w~~~~~~~~~~~~~~~ 421 (619)
++ +|++.+++.+
T Consensus 412 ~~-----~~~~~~~~~~ 423 (438)
T 3o7q_A 412 PT-----AELIPALCFA 423 (438)
T ss_dssp GG-----GGHHHHHHHH
T ss_pred HH-----HHHHHHHHHH
Confidence 44 5665544433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.15 E-value=3.3e-10 Score=120.54 Aligned_cols=180 Identities=17% Similarity=0.133 Sum_probs=125.8
Q ss_pred HHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHHhh
Q 047440 255 ANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF-IGNVMYALAY 333 (619)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~-i~~~l~~~~~ 333 (619)
...+....+...+....|.+....+.+............+...++.++.+++.||+|||+.++.+.... ++.+..+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 333444444555666667778888888887888888888899999999999999999999887766544 4444443331
Q ss_pred cc--CcHHH-HHHHHHHhhccCcc-hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc-ccceeccc
Q 047440 334 DF--SSIAV-LLIGRLFCGFGSAR-AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK-IYKLTFNQ 408 (619)
Q Consensus 334 ~~--~~~~~-l~~~r~l~G~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~-~~~w~w~~ 408 (619)
.. .+... +.+.-+..+++.+. ++...+.+|.+|.+.|+.++|+..+...+|..+++.+...+..... ...+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~--- 440 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH--- 440 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT---
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 11 22222 22223334445555 7788999999999999999999999999999988887766632210 00111
Q ss_pred cchhHHHHHHHHHHHHHHHhhhccCCchh
Q 047440 409 NTLPGWIMAVAWLFYLVWLCISFKEPSRD 437 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~ 437 (619)
...+|++.++++++..++.++++||+...
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 23378888888888889899999998753
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.07 E-value=4.3e-10 Score=119.71 Aligned_cols=171 Identities=9% Similarity=-0.006 Sum_probs=122.0
Q ss_pred HHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHH-----HHHHHH-HHHHH
Q 047440 256 NTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVF-----SSIVLF-IGNVM 328 (619)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~-----~~~~~~-i~~~l 328 (619)
..++...........+|.+..+ ++.+....+++.+...++..++.++.|+++||+|||+... .+.++. ++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 3344444455566667777776 6777678899999999999999999999999999886432 344333 44444
Q ss_pred HHHhh------ccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccc
Q 047440 329 YALAY------DFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFK 400 (619)
Q Consensus 329 ~~~~~------~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~ 400 (619)
..+.. ...+.+.++++-++.|++.+. +...+++.|.+|++.|+.++|+.+....+|..+||.+++++.+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~- 449 (491)
T 4aps_A 371 MAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS- 449 (491)
T ss_dssp THHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-
T ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 44431 113677788888888988777 788899999999999999999999999999999999999886532
Q ss_pred ccceeccccchhHHHHHHHHHHHHHHHhhhccCCc
Q 047440 401 IYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPS 435 (619)
Q Consensus 401 ~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~ 435 (619)
+...|++.+++.++..++.++..++..
T Consensus 450 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 450 --------EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp --------TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233666777776666666666655543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.74 E-value=3.5e-09 Score=108.30 Aligned_cols=148 Identities=13% Similarity=0.038 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhhhHhhccChHHHHHH-hCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHH
Q 047440 249 SLLLNLANTFLYMVNTYIIVPTADDYSMS-LGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNV 327 (619)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~i~~~ 327 (619)
.+....+..++............|.+.++ +|.++.+.|++.+...++..++.++.|++.||+|++..+.......++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555556666665 89999999999999999999999999999999988322222221122211
Q ss_pred --HHHHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440 328 --MYALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN 398 (619)
Q Consensus 328 --l~~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~ 398 (619)
..... ..++.+.+++..++.|++.+. +...+++.|.+| ++|++++|+.+....+|..++|.+.+.+.+.
T Consensus 280 ~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 280 MWIPDWF-GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp SSHHHHH-HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHhhh-ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22221 014677777888888888777 888899999998 8999999999999999999999999988654
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.48 E-value=1.8e-07 Score=100.15 Aligned_cols=166 Identities=7% Similarity=-0.037 Sum_probs=101.3
Q ss_pred ccChHHHHHHhCCcc-chhhHHHhhHHHHHHHHhhhhhhhc----cccCch----hHHHHHHHHH-HHHHHHHHhh----
Q 047440 268 VPTADDYSMSLGAAA-TVCGIVIGAMAIAQVFSSVYFSAWS----NRSYFK----PLVFSSIVLF-IGNVMYALAY---- 333 (619)
Q Consensus 268 ~~~~~~~~~~~g~s~-~~~g~~~s~~~~~~~i~~~~~G~l~----Dr~Grr----~~~~~~~~~~-i~~~l~~~~~---- 333 (619)
.+.++.+..+.+.+. ...+++.+...++.+++.++.+++. +|.|+| +.+..+.++. ++.++.++..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 398 (524)
T 2xut_A 319 ASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMD 398 (524)
T ss_dssp TTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT
T ss_pred chhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444332 2467777777777888888888775 555432 3444454443 5554444431
Q ss_pred --ccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcccccccee----
Q 047440 334 --DFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLT---- 405 (619)
Q Consensus 334 --~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~~~~~~w~---- 405 (619)
...+.+.+++..++.|++.+. +...+++.|.+|++.||+++|+.++...+|..+||.+.+.+.+..+ .+|.
T Consensus 399 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~ 477 (524)
T 2xut_A 399 GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTG 477 (524)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccccc
Confidence 114677788888899998877 8888999999999999999999999999999999999999865321 0120
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhccCC
Q 047440 406 FNQNTLPGWIMAVAWLFYLVWLCISFKEP 434 (619)
Q Consensus 406 w~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 434 (619)
+......|++.+++.++..++.+++.++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00001136666666666666555555544
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.40 E-value=16 Score=36.98 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 047440 66 LLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIG 123 (619)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~ 123 (619)
|.+-..|+.+++..|+.+++... ..+..|+..+.+...++++|+.=+.+....
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQl-----snIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKV-----QHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344466777777777666532 345677777777777777777766655443
No 16
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=77.98 E-value=12 Score=28.26 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 047440 69 QQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKR 134 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~ 134 (619)
++.++.+.+..+..+......+..-..+..+++.+..+..|+..+..=..-..++|.+.++|..-.
T Consensus 24 ~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~~~ 89 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLEHH 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555555554444334445678999999999999999999999999999999997643
No 17
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=77.82 E-value=27 Score=28.53 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKIL 128 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIl 128 (619)
..|...-..+|+.-.+=...+..++++-++.|++++....-++.......+.+.+.....+|..++.|..-=.-...||=
T Consensus 9 R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiW 88 (141)
T 3okq_A 9 RMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTW 88 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence 44555555666665555666788888888888888888877889999999999999999999999999988777777775
Q ss_pred H
Q 047440 129 K 129 (619)
Q Consensus 129 K 129 (619)
-
T Consensus 89 E 89 (141)
T 3okq_A 89 E 89 (141)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=72.12 E-value=40 Score=27.86 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=40.5
Q ss_pred hhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 14 QEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLRE 82 (619)
Q Consensus 14 ~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (619)
||++.-+=+...+|.-|--.-...+.+++=..+.+++.++.|++--++...|+.+-.+-+.+|-+.+.+
T Consensus 17 ~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v~K 85 (140)
T 1avo_B 17 PEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTK 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443322122223332334568899999998889999988777777777666554
No 19
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=69.48 E-value=26 Score=25.10 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDAL 87 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (619)
..+|.+.+..-+.|+.+|-++=..-+..|+..++.+++.+
T Consensus 18 nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~l 57 (73)
T 3pp5_A 18 QREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTIL 57 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999987777777777777776654
No 20
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=67.78 E-value=26 Score=25.20 Aligned_cols=40 Identities=33% Similarity=0.391 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDAL 87 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (619)
..+|.+.++.-+.|+.+|-++=..-+..|+..++.+++.+
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~L 57 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTAL 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999977777777777777776654
No 21
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=65.66 E-value=26 Score=27.49 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHH
Q 047440 69 QQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFV 117 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 117 (619)
....+++|++.++.++.....+.+.+....+.+.+..+..++..|+.=+
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888999999999998888888888999999999999998887644
No 22
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=64.12 E-value=17 Score=20.46 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 54 MLDNQIEKIVLFLLEQQGLLASRLARLREQHD 85 (619)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~ 85 (619)
.|+.|+.|.+.-. .++++|++.+++.++
T Consensus 3 rlee~~r~l~~iv----q~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIV----QKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 5778888877654 456777777776654
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.95 E-value=1.3e+02 Score=29.18 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047440 58 QIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLF 115 (619)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (619)
+.+.-++=|.+-..++.+|+..|+..++.... .++.|+..+.+...++.+|+.
T Consensus 103 q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-----~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 103 KANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-----RINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555666666666655554221 344555555555555555553
No 24
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.06 E-value=41 Score=20.99 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 52 SRMLDNQIEKIVLFLLEQQGLLASRLARLREQ 83 (619)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~ 83 (619)
+..+|+|+.|+. ++..+++.|++.|++.
T Consensus 11 I~kVdrEI~Kte----~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 11 MDRVDREITMVE----QQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 445667777754 3566666777766653
No 25
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=48.88 E-value=1.2e+02 Score=26.03 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHHH
Q 047440 57 NQIEKIVLFLLEQQGLLASRLARLREQHDALLQ--QPDISQMTELREAYRAAGMDLLK 112 (619)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
.+++++.+=|..+..++.+.+...+.+++.+.. .+|....+.+.+++.++..++..
T Consensus 74 ~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455556554555667778888888888888654 34565666666666666665554
No 26
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=46.61 E-value=1.3e+02 Score=28.00 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 047440 59 IEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKF 131 (619)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~ 131 (619)
++.|.+-|..-..++.++++.+|+++-. .++ ....+.+.++.+++..|++...=|...+.++.+..
T Consensus 162 ld~ivd~y~~~l~~i~~~id~lE~~l~~---~~~----~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 227 (280)
T 4egw_A 162 LNEITRSYSRILMNLEDELEELEDKLLA---GYD----REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKY 227 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT---CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCc----hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 4556666777788888888888877532 222 23346778888999999999999999999987644
No 27
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=46.50 E-value=1.1e+02 Score=29.64 Aligned_cols=67 Identities=18% Similarity=0.040 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 047440 59 IEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFD 132 (619)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~d 132 (619)
++.+.+-|..-..++.++++.+|+++-. ..+ ....+.+.++.+++..+++...-|...+.++.+.+.
T Consensus 162 ld~ivd~~~~~l~~l~~~i~~lE~~l~~---~~~----~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~ 228 (339)
T 4ev6_A 162 LNEITRSYSRILMNLEDELEELEDKLLA---GYD----REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYL 228 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTT---CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhh----hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccc
Confidence 3455555666677777777777765432 122 234467778888899999998888888887776543
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.07 E-value=1.8e+02 Score=30.52 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc
Q 047440 98 ELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRF 135 (619)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~ 135 (619)
.+++.+.+....+.++++=..-...=+.+..+|.++..
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444444444444333333344444555555443
No 29
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=45.18 E-value=33 Score=31.87 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 047440 59 IEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKF 131 (619)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~ 131 (619)
++.+.+-|..-..++.++++.+|+++-.- ... ....+.++.+++..|+++..=|...+.++.+..
T Consensus 153 ld~ivd~y~~~l~~l~~~id~lE~~l~~~-~~~-------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 153 CDALTDHASEFIEELHDKIIDLEDNLLDQ-QIP-------PRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-----CCC-------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cch-------hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 34455556666777778888877776432 111 234677888888999999999999999987743
No 30
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=45.16 E-value=1e+02 Score=30.09 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 047440 60 EKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILK 129 (619)
Q Consensus 60 ~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlK 129 (619)
+.+.+-|....+++.++++.+|+++-. .+. ....+.+.++.+++..|+++..-|...+.++.+
T Consensus 187 d~ivd~y~~~l~~l~~~id~lE~~v~~---~~~----~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 249 (363)
T 2iub_A 187 DALVDDYFVLLEKIDDEIDVLEEEVLE---RPE----KETVQRTHQLKRNLVELRKTIWPLREVLSSLYR 249 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS---SCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555667777777777776422 122 233467888999999999999999999999875
No 31
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=44.00 E-value=1.3e+02 Score=24.61 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 047440 54 MLDNQIEKIVLFLL 67 (619)
Q Consensus 54 ~l~~e~~kv~~f~~ 67 (619)
.|.+|++.|+.=|.
T Consensus 63 ~Lhaev~~v~~~F~ 76 (140)
T 1xaw_A 63 SLQSVLDEINKELS 76 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544333
No 32
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=42.46 E-value=1.1e+02 Score=23.17 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLAR 79 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~ 79 (619)
.+||..+-.++++=-.-|+...+++.+.+..
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777666444454444444444433
No 33
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=42.01 E-value=24 Score=26.13 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=29.2
Q ss_pred chhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 13 IQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLA 74 (619)
Q Consensus 13 ~~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~ 74 (619)
|..|-..||+|=. +++. +++++ .++=...|..|++-+..=|..|++.+.
T Consensus 41 V~DWvnfYinyy~-----~~~~-----GeqqE---qdrAlqel~qeL~tl~~pFL~KYR~fL 89 (102)
T 1z8u_A 41 VEDWMNFYINYYR-----QQVT-----GEPQE---RDKALQELRQELNTLANPFLAKYRDFL 89 (102)
T ss_dssp HHHHHHHHHHHHT-----TTCC-----SCHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH-----HHhc-----ccHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4679999999953 1111 12111 234455666888888777777765543
No 34
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=40.47 E-value=1.1e+02 Score=28.10 Aligned_cols=52 Identities=8% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047440 58 QIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (619)
-++..+.+...+..++..+++.++++++++.+ ..+++...+..+-+++..++
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~-----~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIED-----KIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888888877766522 33344444444444444443
No 35
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=39.99 E-value=1.2e+02 Score=22.94 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 63 VLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 63 ~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
..||.+...++..|+..+..+++++.+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~ 33 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELEN 33 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888887776543
No 36
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=39.84 E-value=80 Score=29.20 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 047440 62 IVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKF 131 (619)
Q Consensus 62 v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~ 131 (619)
+.+-|..-..++.++++.+|+++-.- + .....+.+.++.+++..|+++..=|...+.++.+..
T Consensus 180 ivd~y~~~l~~i~~~id~lE~~v~~~---~----~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 180 LVDDYFVLLEKIDDEIDVLEEEVLER---P----EKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555666667777766654321 1 123346788899999999999999999999999764
No 37
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=38.42 E-value=1.4e+02 Score=23.34 Aligned_cols=27 Identities=4% Similarity=0.035 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 50 DFSRMLDNQIEKIVLFLLEQQGLLASR 76 (619)
Q Consensus 50 ~F~~~l~~e~~kv~~f~~~~~~~~~~~ 76 (619)
.....+++|+++|-.=|..+..|+...
T Consensus 61 qLkse~e~E~ae~k~KYD~~lqe~ese 87 (115)
T 3vem_A 61 ILKAELERKMAEVQAEFRRKFHEVEAE 87 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666555555554444433
No 38
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.84 E-value=66 Score=23.91 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=14.7
Q ss_pred HHHHHHH----HHHHHHHHHHHHHH
Q 047440 49 KDFSRML----DNQIEKIVLFLLEQ 69 (619)
Q Consensus 49 ~~F~~~l----~~e~~kv~~f~~~~ 69 (619)
.-|.+.. +.|++||.+||...
T Consensus 74 ~l~~k~~n~ten~~i~ki~~fyl~e 98 (106)
T 2vkj_A 74 VFFEKALNLSDNEEIKKIASFYLEE 98 (106)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccCHHHHHHHHHHHHH
Confidence 3344444 47999999999764
No 39
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=36.68 E-value=19 Score=27.22 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 047440 71 GLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKK 130 (619)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK 130 (619)
.++...+..+..+......+..-..+..+++.+..+..|+..+..=..-..+.|-+++++
T Consensus 33 ~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd~~l~~ 92 (94)
T 3vlc_E 33 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 92 (94)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444333323333455677777777777777766666666666555543
No 40
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=33.74 E-value=1.1e+02 Score=26.09 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 49 KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLRE 82 (619)
Q Consensus 49 ~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (619)
.+-...++.|+++|..-|....+.+..+++.++.
T Consensus 33 ~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~ 66 (171)
T 2p2u_A 33 GEIEAQMNEAIDAAKARASQKSAPLLARRKELED 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666655555553
No 41
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.73 E-value=3.7e+02 Score=26.76 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 047440 55 LDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINA 121 (619)
Q Consensus 55 l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~ 121 (619)
-..+.+.-++=|++-..++.+|+..|...++... ..+..|+..+.+...++..|+.=+....
T Consensus 98 ~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-----~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 98 GLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-----NRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566677777788888888887776643 3567777888888888888887665543
No 42
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=33.56 E-value=3.9e+02 Score=26.94 Aligned_cols=83 Identities=10% Similarity=0.043 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC--CChhHHHHHHHHH----HHHHHHHHHHHhHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQG---LLASRLARLREQHDALLQQ--PDISQMTELREAY----RAAGMDLLKLLFFVE 118 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 118 (619)
.+.-.+.+..++++|..|-+.+.. +-...++.|++.++.+..- ...+....|.+++ .+=..+=..+-++-.
T Consensus 116 n~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr 195 (526)
T 3iyk_A 116 NDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYR 195 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 355666778999999999985433 2334566666666543321 1122233333333 112222233444445
Q ss_pred HHHHHHHHHHHh
Q 047440 119 INAIGLRKILKK 130 (619)
Q Consensus 119 lN~~~~~KIlKK 130 (619)
=|+.++++-++.
T Consensus 196 ~k~~aL~~aIe~ 207 (526)
T 3iyk_A 196 DKIDALKNAIEV 207 (526)
T ss_pred HHHHHHHHHHHH
Confidence 577777776664
No 43
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=33.09 E-value=1.5e+02 Score=21.88 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 57 NQIEKIVLFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
.|++.+..-+.....++...+..|...++.+..
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~ 44 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666777788888888888877654
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.46 E-value=2.9e+02 Score=28.07 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 54 MLDNQIEKIVLFLLEQQGLLASRLARLREQHDA 86 (619)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (619)
.+..||++--.+.+++...-..+++.|+..+++
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555555444
No 45
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=30.88 E-value=1.7e+02 Score=21.87 Aligned_cols=61 Identities=10% Similarity=0.005 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC----hhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047440 58 QIEKIVLFLLEQQGLLASRLARLREQHDALL---QQPD----ISQMTELREAYRAAGMDLLKLLFFVE 118 (619)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (619)
|++.+..=+.....++...+..|...++.+. +-.. ...+..++..+.++...|..+..+..
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666666666655542 2222 22333444455555555555544433
No 46
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=30.75 E-value=1.1e+02 Score=19.91 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047440 64 LFLLEQQGLLASRLARLREQHDALLQ 89 (619)
Q Consensus 64 ~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (619)
.|-.-|+.-+.+|+..++++++++..
T Consensus 21 qF~~LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 21 QFSELKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56666777777788888877776543
No 47
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=30.13 E-value=3.9e+02 Score=25.93 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=41.5
Q ss_pred HhccCchhhHHHHHHhhhhhhc---cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 047440 18 SYYINYKLMKKKVKQYAQQIEV---GAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDIS 94 (619)
Q Consensus 18 ~~yi~Y~~lKk~i~~~~~~~~~---~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (619)
..|++++.+++.+.++...... +++. +.+ ..+.+|+..+..-.. ...++...+++++.-.+-..+..+.+
T Consensus 22 ~~~~~l~~~~~r~~el~~~~~~p~~w~d~-----~~~-~~~~ke~~~l~~~v~-~~~~~~~~~~d~~~~~el~~~e~D~e 94 (365)
T 1gqe_A 22 RGYLDYDAKKERLEEVNAELEQPDVWNEP-----ERA-QALGKERSSLEAVVD-TLDQMKQGLEDVSGLLELAVEADDEE 94 (365)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHSGGGGGSH-----HHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCHHHHHHHHHHHHHHhcCCccccCH-----HHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 3588888888888877653322 1211 222 233344433332222 22233333333333222222223444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047440 95 QMTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~ 114 (619)
....+.+.+.++..++..|+
T Consensus 95 ~~~~a~~e~~~l~~~l~~le 114 (365)
T 1gqe_A 95 TFNEAVAELDALEEKLAQLE 114 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665554
No 48
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=29.74 E-value=1.3e+02 Score=21.26 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047440 81 REQHDALLQQPDISQMTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (619)
+..+++..+..+-+....|.+.+.++..++..++
T Consensus 33 ~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 33 TSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444555666666666666665543
No 49
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.55 E-value=1.8e+02 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 53 RMLDNQIEKIVLFLLEQQGLLASRLARLREQHDAL 87 (619)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (619)
..|+..+..++.-|.....++...+..++.++.+.
T Consensus 22 ~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~ 56 (95)
T 3mov_A 22 RACLERIQELEDLLAKEKDNSRRMLTDKEREMAEI 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777788888888888888888877664
No 50
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.20 E-value=1.1e+02 Score=19.42 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047440 69 QQGLLASRLARLREQHDAL 87 (619)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~ 87 (619)
..+++.+|+..++.+++.+
T Consensus 17 r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5666677777777666554
No 51
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=28.71 E-value=1.9e+02 Score=26.60 Aligned_cols=64 Identities=11% Similarity=-0.053 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 047440 60 EKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKF 131 (619)
Q Consensus 60 ~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~ 131 (619)
+.+.+-|..-..++.++++.+|+++-.- +. ...+.+.++.+++..|+++..=|...+.++.+..
T Consensus 179 d~ivd~y~~~l~~i~~~id~lE~~l~~~---~~-----~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 179 DAVVDSYFEALLKISDEIEVLEDEVVSG---DS-----TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---TC-----CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---cH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556667778888888888876431 11 2234677888889999999999999999998754
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.45 E-value=4.2e+02 Score=26.66 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=10.4
Q ss_pred hhHHhccCchh-hHHHHHHhh
Q 047440 15 EWQSYYINYKL-MKKKVKQYA 34 (619)
Q Consensus 15 ew~~~yi~Y~~-lKk~i~~~~ 34 (619)
++.++-..|+. +|+.|.++.
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe 106 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLK 106 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHH
Confidence 45566565643 555555444
No 53
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=28.35 E-value=3.3e+02 Score=24.55 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=11.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhh
Q 047440 112 KLLFFVEINAIGLRKILKKFDKR 134 (619)
Q Consensus 112 ~l~~~~~lN~~~~~KIlKK~dK~ 134 (619)
-|++|... +.+.+|.+||.+++
T Consensus 135 Pl~~~~~~-~~~i~~~ikKR~~k 156 (251)
T 2fic_A 135 TMDTYLGQ-FPDIKSRIAKRGRK 156 (251)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hHHHHHHHHHHHHH
Confidence 34455432 55556666665543
No 54
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=27.03 E-value=1.8e+02 Score=29.65 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=29.5
Q ss_pred hhhhhcccccchhHHHHH-------HHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 047440 533 VVTTYYFGWSTGAVAIFL-------ACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGIL 590 (619)
Q Consensus 533 ~~~~~~~g~s~~~~g~~~-------~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~ 590 (619)
..+.+.+|++....+..+ .+..+.+.+....+- ++.++.|+...+....+..++.++
T Consensus 147 fvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~-~ii~~~g~~~wl~~w~~~~~~~l~ 210 (482)
T 4aw6_A 147 FVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLL-YIIKIGGDYFFIYAWLFTLVVSLV 210 (482)
T ss_dssp HTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred eeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCchhHHHHHHHHHHHHHH
Confidence 346678899876654421 122222222223333 677888887665444444444433
No 55
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=27.01 E-value=1.9e+02 Score=21.73 Aligned_cols=41 Identities=5% Similarity=0.130 Sum_probs=23.5
Q ss_pred HHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHH--HHHHHHHHH
Q 047440 17 QSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSR--MLDNQIEKI 62 (619)
Q Consensus 17 ~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~--~l~~e~~kv 62 (619)
+...-.|++||+.+.++..+......++ +|-+ .|++.++|.
T Consensus 19 s~~a~~~~~lk~E~~~lk~E~~stSaQD-----eFAKWaKL~Rk~DKl 61 (93)
T 3sjb_C 19 NELSKKYLAKVKERHELKEFNNSISAQD-----NYAKWTKNNRKLDSL 61 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTSCTTT-----CHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhccchHH-----HHHHHHHHHHHHHHH
Confidence 4455567888888888776655444333 3443 445555553
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.42 E-value=3.9e+02 Score=26.81 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047440 66 LLEQQGLLASRLARLREQ 83 (619)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~ 83 (619)
.+++..|.++.+..++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 444444444444444444
No 57
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.11 E-value=81 Score=16.73 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047440 70 QGLLASRLARLREQH 84 (619)
Q Consensus 70 ~~~~~~~~~~~~~~~ 84 (619)
.+++++|+..+++++
T Consensus 10 ledlqerlrklrkkl 24 (27)
T 3twe_A 10 LEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445666666666554
No 58
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.64 E-value=2.8e+02 Score=22.73 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHH
Q 047440 68 EQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVE 118 (619)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 118 (619)
++.+.+..+++.++.+++++ .|+++.+..++.....+..|+..+++=.+
T Consensus 76 ~~~d~lekKl~~aq~kL~~L--~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 76 SVYDAATKKLTQAQNKLQSL--DPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777766665 24555666666777777777777665444
No 59
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=25.02 E-value=16 Score=19.19 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=10.9
Q ss_pred hhhhhccccCchhH
Q 047440 302 YFSAWSNRSYFKPL 315 (619)
Q Consensus 302 ~~G~l~Dr~Grr~~ 315 (619)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788889999865
No 60
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=23.44 E-value=1.5e+02 Score=19.20 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 62 IVLFLLEQQGLLASRLARLREQHDAL 87 (619)
Q Consensus 62 v~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (619)
+..-|.....++..|++....+++++
T Consensus 18 mq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 18 MQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455555666666666555555544
No 61
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=23.39 E-value=1.6e+02 Score=19.34 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Q 047440 75 SRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLL 114 (619)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (619)
+....++..+.+..+..+-+....|.+.+.++-.++..++
T Consensus 9 EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 9 QQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555566667777778877777776665
No 62
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=22.93 E-value=1.1e+02 Score=17.82 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=9.0
Q ss_pred HHHHHhhhccCCchh
Q 047440 423 YLVWLCISFKEPSRD 437 (619)
Q Consensus 423 ~~~~~~~~~pe~~~~ 437 (619)
+.++...+++|+|+-
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 334444567888863
No 63
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.65 E-value=2.4e+02 Score=20.86 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 58 QIEKIVLFLLEQQGLLASRLARLREQHDAL 87 (619)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (619)
|++.+-.-+.....++...+..|...++.+
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555544443
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.01 E-value=2.8e+02 Score=25.34 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=5.5
Q ss_pred HHHHhhhhhc
Q 047440 126 KILKKFDKRF 135 (619)
Q Consensus 126 KIlKK~dK~~ 135 (619)
.+|++|++.-
T Consensus 176 ~lL~~Yerir 185 (256)
T 3na7_A 176 KIYSFYERIR 185 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556666553
No 65
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.70 E-value=4.2e+02 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.190 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q 047440 118 EINAIGLRKILKKF 131 (619)
Q Consensus 118 ~lN~~~~~KIlKK~ 131 (619)
++=+.-|.++|+||
T Consensus 143 emi~k~l~~~L~k~ 156 (213)
T 4ani_A 143 EMVYRSLVDALKKE 156 (213)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 34444455555544
No 66
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=21.55 E-value=2.8e+02 Score=22.77 Aligned_cols=33 Identities=6% Similarity=0.059 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 53 RMLDNQIEKIVLFLLEQQGLLASRLARLREQHD 85 (619)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~ 85 (619)
..+-.|++||..=|++...|+..++-.+-....
T Consensus 4 ~~lL~efDkv~rdy~eH~~eI~~KLv~Im~~r~ 36 (141)
T 3n1e_A 4 WSMLRHFDHITKDYHDHIAEISAKLVAIMDSLF 36 (141)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999888766543
No 67
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.38 E-value=2.1e+02 Score=20.81 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 047440 54 MLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEI 119 (619)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 119 (619)
.|..|+.+.+.- .+++......++.+..+++++.......-...-+++. .|++.|-.|.++
T Consensus 21 ~l~~ell~~~~~-s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV----~EvQ~lit~lDl 81 (89)
T 2d9d_A 21 EIKNELLQAQNP-SELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAV----IEVQTLITYIDL 81 (89)
T ss_dssp HHHHHHHHCSCT-TTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-hHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344555544433 3344455556666666676665533332222223333 666777777764
No 68
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=20.28 E-value=2.4e+02 Score=22.77 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhc----CCccchHHHH
Q 047440 105 AAGMDLLKLLFFVEINAIGLRKILKKFDKRF----GYRFTDYYVK 145 (619)
Q Consensus 105 ~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~----~~~~~~~~~~ 145 (619)
|+.-++.++..-..||....+|-+-|-|=+. .++++..|..
T Consensus 78 ELLya~YQf~q~h~lni~~iSk~iSkn~L~lFPKTeSQLQNTYYK 122 (170)
T 3fdq_A 78 ELLSACYQIAILEDMKVLDISEMLSLNDLRIFPKTPSQLQNTYYK 122 (170)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSTTTTCSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhhHHHHhhHhhhccCCCCHHHHHHHHHH
Confidence 4445556666677899999999998877543 3445555554
No 69
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=20.21 E-value=2.9e+02 Score=28.49 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440 48 LKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDA 86 (619)
Q Consensus 48 ~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (619)
..|++..|.+|++|+.. .+..++..+++.....+.+
T Consensus 61 ~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 96 (526)
T 2de0_X 61 AKELWFFLQSELKKLKN---LEGNELQRHADEFLLDLGH 96 (526)
T ss_dssp HHHHHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHHH
Confidence 35666667778888766 3345555555555554443
No 70
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.18 E-value=2.9e+02 Score=21.05 Aligned_cols=41 Identities=7% Similarity=0.031 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Q 047440 72 LLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLK 112 (619)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
++..+++.|+.++..+...+.++.+..|.+-+......|..
T Consensus 22 ~I~~ev~~L~~~V~~f~g~k~dkey~~L~E~L~k~LLkLD~ 62 (99)
T 1ugo_A 22 EIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDS 62 (99)
T ss_dssp HHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444443333444455555555444444443
No 71
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=20.12 E-value=2.1e+02 Score=23.66 Aligned_cols=28 Identities=14% Similarity=0.410 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 047440 56 DNQIEKIVLFLLEQQG-LLASRLARLREQ 83 (619)
Q Consensus 56 ~~e~~kv~~f~~~~~~-~~~~~~~~~~~~ 83 (619)
+.||+.+..||.+-.+ .+.+..-.+..+
T Consensus 82 ~~El~~l~~FY~sp~Gkk~~~~~p~~~~~ 110 (147)
T 3oao_A 82 ESELKDLNAFYQSPLGKKVLEKMPRLTAE 110 (147)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHhHHHHHH
Confidence 5899999999986543 333333333333
No 72
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.07 E-value=1.5e+02 Score=26.13 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.1
Q ss_pred HhhHHHHHHHHhhhhhhhccccCch
Q 047440 289 IGAMAIAQVFSSVYFSAWSNRSYFK 313 (619)
Q Consensus 289 ~s~~~~~~~i~~~~~G~l~Dr~Grr 313 (619)
+.-|.+|+.+++.+.|++++|..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888999999999999986543
Done!