Query 047445
Match_columns 436
No_of_seqs 136 out of 1326
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:06:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 9.5E-63 2.1E-67 480.8 37.7 416 9-431 4-428 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 9E-62 1.9E-66 471.1 37.2 414 9-429 2-425 (470)
3 PLN00164 glucosyltransferase; 100.0 5.5E-61 1.2E-65 472.8 37.1 412 8-431 1-432 (480)
4 PLN02670 transferase, transfer 100.0 1.2E-60 2.7E-65 465.5 37.1 395 9-431 5-430 (472)
5 PLN03004 UDP-glycosyltransfera 100.0 1.3E-60 2.8E-65 463.6 36.5 405 9-430 2-424 (451)
6 PLN02208 glycosyltransferase f 100.0 1.1E-60 2.5E-65 464.7 35.5 380 8-431 2-402 (442)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.7E-60 5.8E-65 466.4 37.7 397 7-428 6-431 (477)
8 PLN00414 glycosyltransferase f 100.0 6E-60 1.3E-64 460.2 35.4 377 8-431 2-403 (446)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.3E-59 5.1E-64 456.7 36.3 390 9-431 6-411 (451)
10 PLN02562 UDP-glycosyltransfera 100.0 5.9E-59 1.3E-63 455.2 37.7 393 8-430 4-413 (448)
11 PLN02764 glycosyltransferase f 100.0 3.1E-59 6.7E-64 452.1 35.1 382 9-431 4-408 (453)
12 PLN02173 UDP-glucosyl transfer 100.0 8.4E-59 1.8E-63 450.6 36.3 374 9-431 4-409 (449)
13 PLN02210 UDP-glucosyl transfer 100.0 7.5E-59 1.6E-63 454.9 35.5 383 7-431 5-416 (456)
14 PLN02534 UDP-glycosyltransfera 100.0 1.6E-58 3.4E-63 452.9 37.7 397 6-429 4-443 (491)
15 PLN02207 UDP-glycosyltransfera 100.0 2.7E-58 5.8E-63 448.7 37.3 396 8-429 1-425 (468)
16 PLN02555 limonoid glucosyltran 100.0 6.5E-58 1.4E-62 448.0 36.2 393 8-431 5-430 (480)
17 PLN02448 UDP-glycosyltransfera 100.0 1.1E-57 2.5E-62 449.5 36.8 386 7-431 7-416 (459)
18 PLN03007 UDP-glucosyltransfera 100.0 1.5E-57 3.3E-62 450.8 34.9 395 7-431 2-441 (482)
19 PLN02152 indole-3-acetate beta 100.0 1.7E-57 3.8E-62 442.1 34.6 387 9-431 2-418 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 1.9E-57 4.1E-62 449.5 35.3 402 10-429 2-439 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 3.6E-57 7.9E-62 446.8 35.4 397 9-430 2-434 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 9.6E-45 2.1E-49 360.0 21.6 372 11-430 21-432 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.5E-46 5.4E-51 377.3 3.7 367 12-431 2-410 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 8.7E-42 1.9E-46 335.2 18.3 354 11-430 1-372 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 2.1E-39 4.6E-44 316.9 21.2 350 16-430 1-359 (392)
26 COG1819 Glycosyl transferases, 100.0 3.9E-39 8.5E-44 311.6 17.9 363 10-431 1-369 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 8E-39 1.7E-43 322.7 14.7 369 10-427 5-419 (496)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 8.1E-25 1.8E-29 208.1 24.4 301 11-426 1-316 (318)
29 PRK12446 undecaprenyldiphospho 99.9 2E-22 4.3E-27 192.8 23.6 312 12-430 3-325 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 2.9E-21 6.3E-26 183.4 24.3 302 12-429 1-313 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 1.9E-18 4.2E-23 163.4 22.2 313 11-430 1-324 (357)
32 PRK00726 murG undecaprenyldiph 99.7 3E-16 6.6E-21 151.7 22.4 311 11-430 2-324 (357)
33 TIGR03590 PseG pseudaminic aci 99.7 1.8E-15 4E-20 140.2 21.6 255 20-401 13-278 (279)
34 cd03785 GT1_MurG MurG is an N- 99.7 9.6E-16 2.1E-20 147.7 20.4 313 12-430 1-324 (350)
35 TIGR01133 murG undecaprenyldip 99.6 9.5E-14 2.1E-18 133.7 22.1 309 11-430 1-321 (348)
36 COG4671 Predicted glycosyl tra 99.6 3.8E-13 8.2E-18 121.8 18.8 324 9-429 8-364 (400)
37 PRK13609 diacylglycerol glucos 99.5 6E-13 1.3E-17 129.8 18.0 134 270-430 200-338 (380)
38 TIGR00215 lpxB lipid-A-disacch 99.5 2.2E-12 4.8E-17 125.3 16.8 317 11-431 6-348 (385)
39 PF04101 Glyco_tran_28_C: Glyc 99.4 1.1E-14 2.3E-19 124.9 -1.7 85 345-431 55-145 (167)
40 PF03033 Glyco_transf_28: Glyc 99.4 3.5E-13 7.6E-18 111.7 6.3 119 13-144 1-132 (139)
41 PRK00025 lpxB lipid-A-disaccha 99.4 8.4E-12 1.8E-16 121.7 16.4 110 11-139 2-115 (380)
42 PRK13608 diacylglycerol glucos 99.3 6.4E-11 1.4E-15 115.7 15.0 133 270-429 200-337 (391)
43 PLN02605 monogalactosyldiacylg 99.2 4.9E-09 1.1E-13 102.2 21.5 81 345-430 265-347 (382)
44 COG3980 spsG Spore coat polysa 99.1 2.2E-09 4.7E-14 94.8 15.8 261 11-412 1-274 (318)
45 PLN02871 UDP-sulfoquinovose:DA 99.0 7.3E-08 1.6E-12 96.6 23.4 127 274-430 264-400 (465)
46 cd03814 GT1_like_2 This family 99.0 8E-08 1.7E-12 92.4 22.6 79 345-430 247-332 (364)
47 PF04007 DUF354: Protein of un 98.9 6E-07 1.3E-11 84.5 24.2 103 22-143 11-113 (335)
48 TIGR03492 conserved hypothetic 98.9 2.2E-07 4.7E-12 90.7 20.1 80 346-429 280-363 (396)
49 cd03823 GT1_ExpE7_like This fa 98.9 4E-07 8.7E-12 87.3 20.8 80 344-430 242-329 (359)
50 cd03794 GT1_wbuB_like This fam 98.8 4.9E-07 1.1E-11 87.5 20.6 80 344-430 274-365 (394)
51 cd03808 GT1_cap1E_like This fa 98.7 3.4E-06 7.3E-11 80.5 22.8 108 12-140 1-110 (359)
52 cd03816 GT1_ALG1_like This fam 98.7 7E-06 1.5E-10 81.0 24.7 123 9-141 2-129 (415)
53 cd03800 GT1_Sucrose_synthase T 98.7 3.7E-06 8.1E-11 82.2 22.8 79 345-430 283-368 (398)
54 cd03817 GT1_UGDG_like This fam 98.7 1.8E-06 4E-11 83.0 20.1 78 345-430 259-343 (374)
55 cd04962 GT1_like_5 This family 98.7 2.1E-06 4.6E-11 83.2 20.3 77 345-428 253-334 (371)
56 cd03786 GT1_UDP-GlcNAc_2-Epime 98.6 7.2E-07 1.6E-11 86.4 14.3 134 271-430 197-337 (363)
57 PRK10307 putative glycosyl tra 98.6 5.2E-05 1.1E-09 74.8 26.1 81 345-430 284-373 (412)
58 PRK05749 3-deoxy-D-manno-octul 98.6 4.2E-06 9E-11 83.0 18.2 80 347-430 304-388 (425)
59 cd03801 GT1_YqgM_like This fam 98.5 1.9E-05 4.2E-10 75.4 21.3 80 344-430 255-341 (374)
60 cd03798 GT1_wlbH_like This fam 98.5 3.7E-05 8.1E-10 73.6 22.9 81 344-431 258-345 (377)
61 cd03818 GT1_ExpC_like This fam 98.5 2.4E-05 5.2E-10 76.8 21.6 80 344-430 280-366 (396)
62 cd03795 GT1_like_4 This family 98.5 2.5E-05 5.5E-10 75.0 20.3 130 273-430 191-332 (357)
63 cd03825 GT1_wcfI_like This fam 98.4 4.9E-05 1.1E-09 73.2 20.8 38 11-49 1-40 (365)
64 cd03811 GT1_WabH_like This fam 98.4 4.9E-05 1.1E-09 72.2 19.3 69 345-420 246-319 (353)
65 cd03805 GT1_ALG2_like This fam 98.4 0.00014 3.1E-09 71.0 22.9 79 344-430 279-364 (392)
66 cd03820 GT1_amsD_like This fam 98.3 7.4E-05 1.6E-09 70.8 20.1 80 345-430 235-319 (348)
67 cd03821 GT1_Bme6_like This fam 98.3 0.00017 3.6E-09 69.3 22.5 77 345-430 262-345 (375)
68 TIGR00236 wecB UDP-N-acetylglu 98.3 3.4E-05 7.5E-10 74.8 17.4 111 12-139 2-116 (365)
69 TIGR03449 mycothiol_MshA UDP-N 98.3 0.00021 4.6E-09 70.3 23.2 78 345-429 283-367 (405)
70 cd03802 GT1_AviGT4_like This f 98.3 0.00011 2.5E-09 69.9 20.8 125 275-427 173-305 (335)
71 cd03819 GT1_WavL_like This fam 98.3 0.00025 5.4E-09 68.1 22.8 99 20-141 9-109 (355)
72 KOG3349 Predicted glycosyltran 98.3 5.1E-06 1.1E-10 66.5 8.7 111 273-404 4-125 (170)
73 cd03812 GT1_CapH_like This fam 98.3 0.00024 5.3E-09 68.3 22.3 79 345-431 249-332 (358)
74 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00033 7.2E-09 67.7 22.4 318 16-427 5-336 (365)
75 cd05844 GT1_like_7 Glycosyltra 98.2 0.00012 2.6E-09 70.7 18.0 79 345-430 245-336 (367)
76 cd03799 GT1_amsK_like This is 98.2 0.00031 6.7E-09 67.3 20.4 78 345-429 236-326 (355)
77 cd03796 GT1_PIG-A_like This fa 98.1 0.0006 1.3E-08 67.0 22.2 111 12-139 1-119 (398)
78 cd03807 GT1_WbnK_like This fam 98.1 0.00096 2.1E-08 63.7 22.9 76 346-430 252-332 (365)
79 PLN02275 transferase, transfer 98.1 0.002 4.3E-08 62.6 24.7 125 8-142 2-135 (371)
80 TIGR02472 sucr_P_syn_N sucrose 98.1 0.00062 1.3E-08 67.8 21.2 79 345-430 317-406 (439)
81 cd03822 GT1_ecORF704_like This 98.1 0.0013 2.8E-08 63.1 22.4 78 345-430 247-334 (366)
82 cd04951 GT1_WbdM_like This fam 98.1 0.00071 1.5E-08 65.0 20.5 75 345-428 245-324 (360)
83 PF02350 Epimerase_2: UDP-N-ac 98.0 5.8E-05 1.2E-09 72.2 11.8 300 32-430 1-318 (346)
84 COG1519 KdtA 3-deoxy-D-manno-o 97.9 0.0013 2.7E-08 62.7 18.7 311 12-424 50-380 (419)
85 TIGR03088 stp2 sugar transfera 97.9 0.0017 3.7E-08 63.0 20.8 77 346-429 256-337 (374)
86 COG1817 Uncharacterized protei 97.8 0.013 2.8E-07 53.5 21.4 107 18-143 7-114 (346)
87 PRK09922 UDP-D-galactose:(gluc 97.8 0.0016 3.5E-08 62.9 17.1 81 344-431 235-325 (359)
88 cd04955 GT1_like_6 This family 97.7 0.01 2.2E-07 57.0 22.5 47 344-392 247-301 (363)
89 PRK15179 Vi polysaccharide bio 97.7 0.023 5E-07 59.3 25.9 77 344-426 573-655 (694)
90 TIGR02468 sucrsPsyn_pln sucros 97.7 0.013 2.7E-07 63.0 24.0 80 345-431 548-638 (1050)
91 PLN02846 digalactosyldiacylgly 97.7 0.014 3.1E-07 57.7 22.9 43 348-392 287-333 (462)
92 TIGR02149 glgA_Coryne glycogen 97.7 0.0061 1.3E-07 59.4 20.6 76 346-428 261-350 (388)
93 PF02684 LpxB: Lipid-A-disacch 97.7 0.0028 6.1E-08 60.8 17.3 140 241-404 154-301 (373)
94 PRK01021 lpxB lipid-A-disaccha 97.7 0.0071 1.5E-07 60.9 20.3 140 240-402 381-527 (608)
95 TIGR02470 sucr_synth sucrose s 97.7 0.026 5.6E-07 59.2 25.1 130 11-141 256-416 (784)
96 TIGR03087 stp1 sugar transfera 97.6 0.0031 6.7E-08 61.9 16.7 78 344-430 279-362 (397)
97 cd03809 GT1_mtfB_like This fam 97.6 0.0056 1.2E-07 58.6 18.3 77 344-429 252-335 (365)
98 COG0381 WecB UDP-N-acetylgluco 97.5 0.0084 1.8E-07 56.7 17.3 318 13-429 5-340 (383)
99 cd01635 Glycosyltransferase_GT 97.5 0.013 2.9E-07 51.8 17.8 49 345-395 161-217 (229)
100 PRK14089 ipid-A-disaccharide s 97.4 0.0091 2E-07 56.9 16.0 44 356-403 230-275 (347)
101 PF06722 DUF1205: Protein of u 97.3 0.00021 4.5E-09 54.3 2.8 64 258-336 26-94 (97)
102 COG0763 LpxB Lipid A disacchar 97.2 0.0044 9.6E-08 58.4 11.5 123 241-389 157-289 (381)
103 PRK00654 glgA glycogen synthas 97.2 0.048 1E-06 54.7 19.9 38 11-49 1-44 (466)
104 PF13844 Glyco_transf_41: Glyc 97.2 0.0013 2.9E-08 64.4 7.9 123 270-409 282-410 (468)
105 COG5017 Uncharacterized conser 97.1 0.0019 4.1E-08 51.1 6.8 52 356-410 60-119 (161)
106 PRK10125 putative glycosyl tra 97.1 0.031 6.6E-07 55.0 17.1 38 11-49 1-40 (405)
107 PLN00142 sucrose synthase 97.1 0.049 1.1E-06 57.3 18.9 111 30-142 320-440 (815)
108 TIGR02193 heptsyl_trn_I lipopo 97.1 0.043 9.2E-07 52.1 17.1 108 12-137 1-110 (319)
109 cd03791 GT1_Glycogen_synthase_ 97.0 0.11 2.4E-06 52.3 20.6 80 345-427 351-439 (476)
110 cd03792 GT1_Trehalose_phosphor 96.9 0.3 6.6E-06 47.3 22.4 36 13-49 2-39 (372)
111 PRK10422 lipopolysaccharide co 96.9 0.4 8.6E-06 46.2 22.3 108 9-138 4-113 (352)
112 cd03806 GT1_ALG11_like This fa 96.8 0.46 1E-05 47.0 22.8 78 345-430 305-392 (419)
113 PRK10916 ADP-heptose:LPS hepto 96.6 0.25 5.5E-06 47.5 18.8 104 11-138 1-106 (348)
114 PLN02949 transferase, transfer 96.5 1.1 2.3E-05 44.9 22.8 128 9-144 32-171 (463)
115 TIGR02201 heptsyl_trn_III lipo 96.4 0.61 1.3E-05 44.7 19.6 106 12-138 1-108 (344)
116 cd04950 GT1_like_1 Glycosyltra 96.3 0.98 2.1E-05 43.8 21.1 75 344-428 253-338 (373)
117 cd04949 GT1_gtfA_like This fam 96.1 0.1 2.2E-06 50.5 12.7 82 345-430 261-345 (372)
118 PF13477 Glyco_trans_4_2: Glyc 96.0 0.097 2.1E-06 42.7 10.6 103 12-141 1-107 (139)
119 PRK10964 ADP-heptose:LPS hepto 95.9 0.4 8.7E-06 45.5 15.6 51 11-68 1-52 (322)
120 COG3914 Spy Predicted O-linked 95.8 0.058 1.3E-06 53.4 9.5 105 270-396 427-542 (620)
121 TIGR02195 heptsyl_trn_II lipop 95.8 1.8 4E-05 41.2 20.6 102 12-137 1-104 (334)
122 PLN02501 digalactosyldiacylgly 95.8 0.42 9.1E-06 49.3 15.6 46 346-393 602-652 (794)
123 cd03804 GT1_wbaZ_like This fam 95.7 0.015 3.2E-07 55.9 4.9 126 276-431 198-327 (351)
124 PF13692 Glyco_trans_1_4: Glyc 95.6 0.0065 1.4E-07 49.4 1.8 77 345-428 53-133 (135)
125 cd03813 GT1_like_3 This family 95.5 1 2.2E-05 45.4 17.5 81 345-430 354-442 (475)
126 PF13579 Glyco_trans_4_4: Glyc 95.5 0.025 5.3E-07 47.0 5.0 94 25-141 5-104 (160)
127 PLN02316 synthase/transferase 95.3 5.5 0.00012 43.6 26.3 41 8-49 585-631 (1036)
128 PF00534 Glycos_transf_1: Glyc 95.2 0.018 3.9E-07 48.9 3.4 78 345-429 73-157 (172)
129 cd03789 GT1_LPS_heptosyltransf 95.2 2.6 5.7E-05 39.0 20.8 102 12-137 1-104 (279)
130 PF06258 Mito_fiss_Elm1: Mitoc 95.1 2.8 6E-05 39.5 17.9 39 354-393 221-259 (311)
131 PRK15490 Vi polysaccharide bio 95.0 4.6 0.0001 41.0 20.7 46 345-392 455-505 (578)
132 cd04946 GT1_AmsK_like This fam 94.6 0.14 3E-06 50.5 8.3 82 344-430 288-377 (407)
133 PRK15427 colanic acid biosynth 94.5 0.12 2.5E-06 50.9 7.4 78 345-429 279-369 (406)
134 KOG4626 O-linked N-acetylgluco 94.2 0.14 3.1E-06 51.1 7.0 120 270-410 756-885 (966)
135 PF08660 Alg14: Oligosaccharid 93.8 1.3 2.9E-05 37.6 11.5 120 15-142 2-130 (170)
136 TIGR02918 accessory Sec system 93.6 8.9 0.00019 38.9 19.0 47 344-392 375-425 (500)
137 PF10093 DUF2331: Uncharacteri 93.6 4.6 9.9E-05 38.7 15.7 52 346-402 245-299 (374)
138 PLN02939 transferase, transfer 93.4 14 0.0003 40.1 24.9 41 8-49 479-525 (977)
139 COG0496 SurE Predicted acid ph 93.4 0.47 1E-05 42.6 8.2 108 11-142 1-126 (252)
140 PF01975 SurE: Survival protei 93.1 0.38 8.2E-06 41.9 7.1 37 11-49 1-37 (196)
141 PRK15484 lipopolysaccharide 1, 92.8 0.72 1.6E-05 44.9 9.6 79 345-430 257-344 (380)
142 COG0859 RfaF ADP-heptose:LPS h 92.6 9.8 0.00021 36.3 19.8 105 11-138 2-107 (334)
143 PF12000 Glyco_trans_4_3: Gkyc 92.3 1.6 3.4E-05 37.1 9.6 30 112-141 66-96 (171)
144 PF13439 Glyco_transf_4: Glyco 92.3 0.47 1E-05 39.8 6.8 101 20-144 11-112 (177)
145 TIGR02095 glgA glycogen/starch 91.8 1.7 3.8E-05 43.6 11.2 38 11-49 1-44 (473)
146 PRK02261 methylaspartate mutas 91.1 2.3 5E-05 34.7 9.2 61 8-73 1-61 (137)
147 PRK13932 stationary phase surv 91.0 1.4 3E-05 40.0 8.4 39 8-49 3-41 (257)
148 cd00561 CobA_CobO_BtuR ATP:cor 89.2 11 0.00023 31.6 11.8 104 12-124 4-107 (159)
149 PHA01633 putative glycosyl tra 89.2 3.1 6.6E-05 39.7 9.6 80 346-427 202-304 (335)
150 COG1618 Predicted nucleotide k 87.9 3.2 6.9E-05 34.6 7.5 57 9-74 4-60 (179)
151 PRK05986 cob(I)alamin adenolsy 87.0 19 0.00042 31.1 12.3 106 9-123 21-126 (191)
152 TIGR00715 precor6x_red precorr 86.9 4.4 9.5E-05 37.0 8.8 93 11-140 1-99 (256)
153 cd02067 B12-binding B12 bindin 86.0 5.1 0.00011 31.5 7.9 37 12-49 1-37 (119)
154 COG4088 Predicted nucleotide k 86.0 13 0.00029 32.5 10.5 101 12-143 3-110 (261)
155 PRK05973 replicative DNA helic 85.2 11 0.00023 34.0 10.2 37 12-49 66-102 (237)
156 TIGR02655 circ_KaiC circadian 83.8 22 0.00048 35.9 13.0 110 11-141 264-397 (484)
157 TIGR00087 surE 5'/3'-nucleotid 83.5 7.3 0.00016 35.2 8.4 36 11-49 1-36 (244)
158 PRK04328 hypothetical protein; 83.3 34 0.00074 31.0 13.0 38 11-49 24-61 (249)
159 PRK02797 4-alpha-L-fucosyltran 83.0 3 6.4E-05 38.8 5.7 77 345-424 206-288 (322)
160 COG2109 BtuR ATP:corrinoid ade 82.8 30 0.00065 29.8 11.2 105 12-124 30-134 (198)
161 PF05159 Capsule_synth: Capsul 82.7 11 0.00023 34.7 9.6 43 346-391 184-226 (269)
162 PF02374 ArsA_ATPase: Anion-tr 82.4 1.7 3.6E-05 40.9 4.1 38 11-49 1-39 (305)
163 PRK13933 stationary phase surv 82.1 8.5 0.00018 35.0 8.3 36 11-49 1-36 (253)
164 PF06925 MGDG_synth: Monogalac 81.7 2.5 5.4E-05 35.8 4.6 39 102-141 80-124 (169)
165 PRK06849 hypothetical protein; 81.6 9.6 0.00021 37.2 9.3 37 8-49 2-38 (389)
166 PRK13935 stationary phase surv 81.1 23 0.0005 32.2 10.6 36 11-49 1-36 (253)
167 PRK13934 stationary phase surv 81.0 25 0.00054 32.1 10.9 36 11-49 1-36 (266)
168 PF08323 Glyco_transf_5: Starc 80.6 18 0.0004 32.7 10.1 37 12-49 1-43 (245)
169 PRK06067 flagellar accessory p 80.6 9.3 0.0002 34.2 8.2 38 11-49 26-63 (234)
170 PF07429 Glyco_transf_56: 4-al 80.4 6.9 0.00015 37.0 7.2 82 343-427 243-330 (360)
171 COG2874 FlaH Predicted ATPases 80.3 25 0.00053 31.0 10.0 90 17-125 35-136 (235)
172 PRK03359 putative electron tra 79.7 37 0.00079 31.0 11.6 99 27-142 41-148 (256)
173 cd00550 ArsA_ATPase Oxyanion-t 79.6 12 0.00025 34.2 8.6 36 13-49 3-38 (254)
174 COG1066 Sms Predicted ATP-depe 79.6 4.3 9.3E-05 39.2 5.7 102 13-141 96-218 (456)
175 PF04413 Glycos_transf_N: 3-De 79.6 10 0.00023 32.7 7.8 101 12-141 22-126 (186)
176 cd01124 KaiC KaiC is a circadi 79.5 9.1 0.0002 32.7 7.5 36 13-49 2-37 (187)
177 PF02441 Flavoprotein: Flavopr 79.4 2.9 6.3E-05 33.6 4.0 37 11-49 1-37 (129)
178 PRK12342 hypothetical protein; 79.1 26 0.00056 31.9 10.4 98 27-142 40-145 (254)
179 COG0003 ArsA Predicted ATPase 78.9 17 0.00037 34.4 9.5 38 11-49 2-40 (322)
180 PF02951 GSH-S_N: Prokaryotic 78.8 3.6 7.9E-05 32.5 4.2 38 11-49 1-41 (119)
181 TIGR00347 bioD dethiobiotin sy 78.7 17 0.00037 30.4 8.8 28 18-46 6-33 (166)
182 PF01012 ETF: Electron transfe 78.1 24 0.00051 29.6 9.5 101 25-142 18-123 (164)
183 TIGR03877 thermo_KaiC_1 KaiC d 78.0 22 0.00049 31.9 9.8 38 11-49 22-59 (237)
184 TIGR03880 KaiC_arch_3 KaiC dom 77.8 17 0.00036 32.3 8.9 102 11-123 17-118 (224)
185 PRK09814 beta-1,6-galactofuran 77.5 1.9 4.1E-05 41.2 2.8 74 345-426 207-296 (333)
186 PF02702 KdpD: Osmosensitive K 77.3 13 0.00029 32.3 7.5 40 9-49 4-43 (211)
187 TIGR03878 thermo_KaiC_2 KaiC d 77.2 20 0.00044 32.7 9.4 37 12-49 38-74 (259)
188 PRK13931 stationary phase surv 76.9 23 0.00049 32.4 9.4 109 11-141 1-129 (261)
189 cd02070 corrinoid_protein_B12- 76.1 22 0.00047 31.1 8.9 60 9-73 81-140 (201)
190 PRK13789 phosphoribosylamine-- 76.1 13 0.00027 36.9 8.2 92 8-137 2-96 (426)
191 PRK00090 bioD dithiobiotin syn 76.0 31 0.00067 30.5 10.1 34 13-47 2-36 (222)
192 PRK06321 replicative DNA helic 75.9 41 0.00089 33.8 11.8 38 12-49 228-265 (472)
193 COG1703 ArgK Putative periplas 75.9 47 0.001 30.9 11.0 40 9-49 50-89 (323)
194 cd01121 Sms Sms (bacterial rad 75.5 30 0.00064 33.6 10.3 103 13-141 85-208 (372)
195 cd01981 Pchlide_reductase_B Pc 74.8 38 0.00083 33.6 11.3 36 102-141 361-396 (430)
196 COG0467 RAD55 RecA-superfamily 74.3 9.3 0.0002 34.9 6.4 103 11-123 24-135 (260)
197 PRK00346 surE 5'(3')-nucleotid 74.2 16 0.00034 33.2 7.6 36 11-49 1-36 (250)
198 PF00551 Formyl_trans_N: Formy 74.2 55 0.0012 28.0 11.0 107 11-142 1-110 (181)
199 COG0052 RpsB Ribosomal protein 74.1 21 0.00046 32.0 8.1 33 112-144 156-190 (252)
200 COG0552 FtsY Signal recognitio 73.9 42 0.00092 31.7 10.4 89 10-120 139-229 (340)
201 PRK14099 glycogen synthase; Pr 73.8 5.4 0.00012 40.3 5.1 41 8-49 1-47 (485)
202 TIGR02370 pyl_corrinoid methyl 73.5 14 0.0003 32.2 7.0 60 9-73 83-142 (197)
203 PRK02910 light-independent pro 73.3 35 0.00075 34.8 10.7 35 102-140 353-387 (519)
204 PF02310 B12-binding: B12 bind 73.0 7.7 0.00017 30.5 4.9 38 11-49 1-38 (121)
205 PRK11823 DNA repair protein Ra 72.9 14 0.0003 36.9 7.6 103 12-140 82-205 (446)
206 PRK08305 spoVFB dipicolinate s 72.6 7.7 0.00017 33.7 5.0 40 9-49 4-43 (196)
207 cd01425 RPS2 Ribosomal protein 72.4 19 0.00042 31.2 7.5 115 23-144 41-161 (193)
208 PRK05595 replicative DNA helic 71.9 42 0.00091 33.5 10.8 37 12-49 203-240 (444)
209 cd01424 MGS_CPS_II Methylglyox 71.9 44 0.00094 25.8 9.0 83 23-138 11-100 (110)
210 PF01075 Glyco_transf_9: Glyco 71.2 9.7 0.00021 34.3 5.7 99 271-389 104-208 (247)
211 TIGR00379 cobB cobyrinic acid 70.4 69 0.0015 32.0 11.9 105 13-143 2-120 (449)
212 CHL00076 chlB photochlorophyll 70.3 40 0.00086 34.3 10.3 35 102-140 365-399 (513)
213 cd02071 MM_CoA_mut_B12_BD meth 70.1 30 0.00065 27.4 7.7 37 12-49 1-37 (122)
214 PF12146 Hydrolase_4: Putative 69.8 13 0.00027 27.0 4.9 39 10-49 15-53 (79)
215 TIGR03600 phage_DnaB phage rep 69.7 48 0.001 32.7 10.7 37 12-49 196-233 (421)
216 PRK10017 colanic acid biosynth 69.5 18 0.00039 35.8 7.5 149 262-428 224-390 (426)
217 PRK08506 replicative DNA helic 69.5 58 0.0013 32.8 11.2 37 12-49 194-230 (472)
218 TIGR00416 sms DNA repair prote 69.4 25 0.00055 35.1 8.6 37 12-49 96-132 (454)
219 PRK14098 glycogen synthase; Pr 69.1 8.5 0.00018 38.9 5.3 39 10-49 5-49 (489)
220 smart00851 MGS MGS-like domain 68.9 44 0.00096 24.7 8.3 79 27-137 2-89 (90)
221 PHA02542 41 41 helicase; Provi 68.6 42 0.00092 33.7 9.9 37 12-49 192-228 (473)
222 TIGR02237 recomb_radB DNA repa 68.2 33 0.00072 29.9 8.3 91 12-123 14-108 (209)
223 PRK06749 replicative DNA helic 67.9 24 0.00053 34.9 8.1 37 12-49 188-224 (428)
224 COG2185 Sbm Methylmalonyl-CoA 67.6 9.6 0.00021 31.1 4.2 41 8-49 10-50 (143)
225 PRK01077 cobyrinic acid a,c-di 67.4 53 0.0011 32.8 10.4 106 12-143 5-124 (451)
226 PRK08760 replicative DNA helic 67.1 32 0.0007 34.6 8.8 38 12-49 231-268 (476)
227 cd03466 Nitrogenase_NifN_2 Nit 66.9 81 0.0018 31.3 11.6 34 102-139 363-396 (429)
228 PF02142 MGS: MGS-like domain 66.7 14 0.0003 27.8 4.9 83 27-137 2-94 (95)
229 PF01591 6PF2K: 6-phosphofruct 66.6 60 0.0013 28.9 9.5 113 9-141 11-130 (222)
230 KOG3062 RNA polymerase II elon 66.4 38 0.00083 30.1 7.8 37 12-49 3-40 (281)
231 cd01980 Chlide_reductase_Y Chl 66.2 71 0.0015 31.5 10.9 32 105-140 344-375 (416)
232 PF02572 CobA_CobO_BtuR: ATP:c 66.0 83 0.0018 26.7 10.2 103 12-123 5-107 (172)
233 COG1797 CobB Cobyrinic acid a, 65.9 19 0.00041 35.2 6.5 49 12-61 2-51 (451)
234 TIGR01283 nifE nitrogenase mol 65.8 95 0.0021 31.1 11.9 34 102-139 386-419 (456)
235 TIGR02990 ectoine_eutA ectoine 65.7 38 0.00082 30.5 8.2 100 24-138 105-211 (239)
236 PLN02470 acetolactate synthase 65.6 5.7 0.00012 41.2 3.3 28 363-390 76-109 (585)
237 PRK05636 replicative DNA helic 65.3 46 0.001 33.8 9.5 38 12-49 267-304 (505)
238 COG0541 Ffh Signal recognition 65.2 75 0.0016 31.2 10.3 60 10-72 100-161 (451)
239 COG2120 Uncharacterized protei 65.1 33 0.00072 30.9 7.7 41 7-49 7-48 (237)
240 PRK09302 circadian clock prote 65.0 19 0.00042 36.5 7.0 98 11-123 274-374 (509)
241 cd00532 MGS-like MGS-like doma 64.8 64 0.0014 25.0 8.8 84 23-138 10-104 (112)
242 TIGR00708 cobA cob(I)alamin ad 64.4 90 0.0019 26.6 11.8 103 11-123 6-108 (173)
243 PRK07773 replicative DNA helic 63.6 36 0.00077 37.3 9.0 38 12-49 219-256 (886)
244 cd02069 methionine_synthase_B1 63.5 31 0.00066 30.5 7.1 60 9-73 87-146 (213)
245 cd01968 Nitrogenase_NifE_I Nit 63.5 1E+02 0.0022 30.3 11.5 33 102-138 347-379 (410)
246 TIGR01278 DPOR_BchB light-inde 63.0 54 0.0012 33.4 9.7 36 102-141 355-390 (511)
247 PRK09165 replicative DNA helic 62.7 1.1E+02 0.0023 31.1 11.6 38 12-49 219-270 (497)
248 PRK13982 bifunctional SbtC-lik 62.6 40 0.00086 33.8 8.3 40 9-49 255-306 (475)
249 PRK14478 nitrogenase molybdenu 62.4 1.1E+02 0.0024 30.9 11.6 33 102-138 384-416 (475)
250 PRK05647 purN phosphoribosylgl 62.4 71 0.0015 27.9 9.1 86 11-120 2-88 (200)
251 cd01974 Nitrogenase_MoFe_beta 62.2 1E+02 0.0022 30.7 11.3 35 102-140 368-402 (435)
252 PF08433 KTI12: Chromatin asso 62.2 61 0.0013 29.9 9.0 101 12-145 3-109 (270)
253 COG1663 LpxK Tetraacyldisaccha 61.3 27 0.00058 33.0 6.4 37 12-49 48-87 (336)
254 TIGR00460 fmt methionyl-tRNA f 61.3 40 0.00086 31.8 7.8 33 11-49 1-33 (313)
255 cd01423 MGS_CPS_I_III Methylgl 60.7 78 0.0017 24.6 9.0 93 15-137 4-105 (116)
256 PRK14098 glycogen synthase; Pr 60.6 14 0.00031 37.3 5.1 77 345-426 362-447 (489)
257 cd07035 TPP_PYR_POX_like Pyrim 60.5 17 0.00037 30.0 4.8 26 366-391 62-93 (155)
258 PRK00771 signal recognition pa 60.4 1E+02 0.0023 30.6 10.8 39 10-49 95-133 (437)
259 KOG0780 Signal recognition par 60.2 56 0.0012 31.6 8.3 41 8-49 99-139 (483)
260 PRK10490 sensor protein KdpD; 60.1 46 0.00099 36.6 9.1 41 8-49 22-62 (895)
261 PF06564 YhjQ: YhjQ protein; 59.7 1.4E+02 0.0029 27.1 10.7 30 19-49 11-40 (243)
262 PF03808 Glyco_tran_WecB: Glyc 59.7 1.1E+02 0.0023 25.9 12.4 97 26-144 36-136 (172)
263 PF02606 LpxK: Tetraacyldisacc 59.6 28 0.0006 33.1 6.4 32 17-49 44-75 (326)
264 COG3660 Predicted nucleoside-d 59.4 29 0.00063 31.5 6.0 38 351-389 234-271 (329)
265 TIGR00725 conserved hypothetic 59.3 48 0.001 27.7 7.2 37 354-391 83-123 (159)
266 cd00984 DnaB_C DnaB helicase C 59.0 1.1E+02 0.0024 27.2 10.2 38 12-49 15-52 (242)
267 TIGR02095 glgA glycogen/starch 58.8 46 0.00099 33.4 8.3 80 345-427 346-434 (473)
268 cd01977 Nitrogenase_VFe_alpha 58.7 1.1E+02 0.0024 30.2 10.8 93 11-139 289-382 (415)
269 PHA01630 putative group 1 glyc 58.6 54 0.0012 31.2 8.4 40 351-392 196-242 (331)
270 COG0801 FolK 7,8-dihydro-6-hyd 58.6 21 0.00046 29.8 4.8 35 274-308 3-37 (160)
271 COG2099 CobK Precorrin-6x redu 58.4 63 0.0014 29.2 8.0 82 27-141 14-101 (257)
272 TIGR03446 mycothiol_Mca mycoth 58.2 1E+02 0.0022 28.7 9.7 16 102-118 112-127 (283)
273 cd01122 GP4d_helicase GP4d_hel 57.6 47 0.001 30.3 7.7 38 12-49 32-69 (271)
274 PRK11519 tyrosine kinase; Prov 56.2 2.1E+02 0.0044 30.7 13.0 40 9-49 524-565 (719)
275 TIGR00665 DnaB replicative DNA 56.2 2.1E+02 0.0046 28.3 12.9 38 12-49 197-234 (434)
276 PRK12311 rpsB 30S ribosomal pr 55.2 41 0.00088 31.8 6.6 33 112-144 152-186 (326)
277 COG1484 DnaC DNA replication p 55.2 18 0.0004 32.9 4.3 40 9-49 104-143 (254)
278 COG0223 Fmt Methionyl-tRNA for 55.1 61 0.0013 30.4 7.7 34 10-49 1-34 (307)
279 PRK05920 aromatic acid decarbo 55.1 23 0.00049 31.1 4.7 38 10-49 3-40 (204)
280 PF06745 KaiC: KaiC; InterPro 54.9 51 0.0011 29.2 7.2 98 10-123 19-126 (226)
281 TIGR01285 nifN nitrogenase mol 54.8 85 0.0018 31.2 9.3 87 10-139 311-397 (432)
282 PRK07313 phosphopantothenoylcy 54.7 19 0.00042 30.9 4.2 37 11-49 2-38 (182)
283 PRK00784 cobyric acid synthase 54.4 1.7E+02 0.0038 29.5 11.6 34 13-47 5-39 (488)
284 cd01965 Nitrogenase_MoFe_beta_ 54.1 70 0.0015 31.7 8.6 35 102-140 362-396 (428)
285 PRK10867 signal recognition pa 54.0 1.3E+02 0.0029 29.8 10.3 40 10-49 100-139 (433)
286 TIGR02015 BchY chlorophyllide 53.8 1.3E+02 0.0029 29.7 10.4 92 12-140 287-380 (422)
287 TIGR01284 alt_nitrog_alph nitr 53.8 1.4E+02 0.0031 29.8 10.8 34 102-139 386-419 (457)
288 PRK06029 3-octaprenyl-4-hydrox 53.5 22 0.00048 30.6 4.3 37 11-49 2-39 (185)
289 TIGR02852 spore_dpaB dipicolin 53.4 24 0.00052 30.4 4.5 37 12-49 2-38 (187)
290 TIGR00682 lpxK tetraacyldisacc 52.4 32 0.00069 32.4 5.5 37 12-49 29-68 (311)
291 COG1090 Predicted nucleoside-d 52.3 1.6E+02 0.0035 27.2 9.6 21 28-49 12-32 (297)
292 TIGR02195 heptsyl_trn_II lipop 52.3 1.8E+02 0.004 27.4 11.0 86 24-141 193-278 (334)
293 COG2086 FixA Electron transfer 51.7 1.9E+02 0.0042 26.4 10.7 98 27-141 42-146 (260)
294 TIGR02699 archaeo_AfpA archaeo 51.6 27 0.00058 29.8 4.4 36 13-49 2-38 (174)
295 TIGR03881 KaiC_arch_4 KaiC dom 51.1 98 0.0021 27.4 8.4 38 11-49 21-58 (229)
296 PRK06249 2-dehydropantoate 2-r 50.5 20 0.00044 33.7 4.0 37 7-49 2-38 (313)
297 PF00448 SRP54: SRP54-type pro 50.5 1.2E+02 0.0027 26.3 8.6 58 12-72 3-62 (196)
298 TIGR00959 ffh signal recogniti 50.4 1E+02 0.0022 30.6 8.9 38 11-49 100-138 (428)
299 TIGR03713 acc_sec_asp1 accesso 50.1 44 0.00095 34.1 6.5 41 345-387 409-455 (519)
300 PRK14477 bifunctional nitrogen 49.4 2E+02 0.0042 31.9 11.6 35 102-140 380-414 (917)
301 cd00983 recA RecA is a bacter 48.7 65 0.0014 30.5 7.0 36 13-49 58-93 (325)
302 PF09001 DUF1890: Domain of un 48.5 24 0.00053 28.4 3.4 36 20-62 9-44 (139)
303 cd01840 SGNH_hydrolase_yrhL_li 48.4 51 0.0011 27.0 5.7 38 271-309 50-87 (150)
304 PRK11199 tyrA bifunctional cho 48.2 2.6E+02 0.0056 27.1 11.3 99 9-142 97-199 (374)
305 PF02571 CbiJ: Precorrin-6x re 47.8 76 0.0016 28.8 7.0 39 102-141 57-101 (249)
306 TIGR03499 FlhF flagellar biosy 47.1 1.6E+02 0.0034 27.3 9.2 38 12-49 196-234 (282)
307 COG1748 LYS9 Saccharopine dehy 46.9 1.7E+02 0.0036 28.6 9.5 54 11-74 2-56 (389)
308 PRK10416 signal recognition pa 46.6 2.3E+02 0.0049 26.9 10.3 39 10-49 114-152 (318)
309 PF07302 AroM: AroM protein; 46.4 2.1E+02 0.0046 25.4 10.5 32 106-138 173-207 (221)
310 TIGR00421 ubiX_pad polyprenyl 45.7 28 0.00061 29.8 3.8 36 12-49 1-36 (181)
311 TIGR01862 N2-ase-Ialpha nitrog 45.7 1.7E+02 0.0036 29.2 9.8 34 102-139 378-411 (443)
312 PRK08057 cobalt-precorrin-6x r 45.7 1.3E+02 0.0028 27.3 8.2 92 11-141 3-100 (248)
313 PRK06027 purU formyltetrahydro 45.6 1.9E+02 0.0041 26.9 9.5 86 8-120 87-173 (286)
314 PRK08155 acetolactate synthase 45.5 43 0.00093 34.6 5.8 26 365-390 78-109 (564)
315 COG3340 PepE Peptidase E [Amin 45.5 1.6E+02 0.0036 25.9 8.2 46 259-305 21-66 (224)
316 TIGR00064 ftsY signal recognit 45.3 2.5E+02 0.0054 25.8 11.7 37 12-49 74-110 (272)
317 KOG1250 Threonine/serine dehyd 44.5 67 0.0015 31.1 6.2 32 112-143 114-147 (457)
318 TIGR02012 tigrfam_recA protein 44.5 70 0.0015 30.3 6.5 36 13-49 58-93 (321)
319 TIGR01007 eps_fam capsular exo 44.1 47 0.001 28.8 5.1 40 9-49 15-56 (204)
320 PRK07313 phosphopantothenoylcy 43.9 2.1E+02 0.0045 24.6 8.8 51 357-409 73-145 (182)
321 COG0859 RfaF ADP-heptose:LPS h 43.6 1.6E+02 0.0035 27.9 9.1 100 11-143 176-280 (334)
322 PRK12726 flagellar biosynthesi 43.5 2E+02 0.0044 28.1 9.4 37 12-49 208-244 (407)
323 PRK12475 thiamine/molybdopteri 43.5 1.9E+02 0.0041 27.6 9.4 35 9-49 23-58 (338)
324 COG1435 Tdk Thymidine kinase [ 43.2 1.1E+02 0.0023 26.7 6.7 36 13-49 7-42 (201)
325 COG2894 MinD Septum formation 43.1 1E+02 0.0022 27.5 6.6 37 12-49 3-41 (272)
326 PF01075 Glyco_transf_9: Glyco 43.0 65 0.0014 28.8 6.0 104 10-143 105-212 (247)
327 PRK07710 acetolactate synthase 42.3 18 0.0004 37.4 2.5 25 366-390 81-111 (571)
328 PF07355 GRDB: Glycine/sarcosi 42.3 58 0.0013 30.9 5.5 38 102-140 71-118 (349)
329 PRK07414 cob(I)yrinic acid a,c 42.0 2.2E+02 0.0048 24.3 11.3 105 11-123 22-126 (178)
330 PRK09302 circadian clock prote 42.0 1.4E+02 0.0031 30.3 8.8 39 11-49 32-70 (509)
331 PRK13896 cobyrinic acid a,c-di 41.8 3.7E+02 0.0079 26.8 11.9 42 12-54 3-45 (433)
332 PF00731 AIRC: AIR carboxylase 41.6 75 0.0016 26.3 5.4 33 274-308 2-34 (150)
333 PF02585 PIG-L: GlcNAc-PI de-N 41.5 1.7E+02 0.0037 23.0 9.1 79 26-120 13-108 (128)
334 cd01985 ETF The electron trans 41.5 2.2E+02 0.0047 24.1 10.1 99 25-141 22-123 (181)
335 PRK10916 ADP-heptose:LPS hepto 41.5 1.9E+02 0.0041 27.5 9.3 88 26-141 201-288 (348)
336 COG0132 BioD Dethiobiotin synt 41.2 2.6E+02 0.0057 24.9 9.7 36 12-48 3-40 (223)
337 PRK08199 thiamine pyrophosphat 41.1 32 0.0007 35.4 4.1 27 364-390 72-104 (557)
338 PF13419 HAD_2: Haloacid dehal 41.1 1.1E+02 0.0024 25.0 6.9 90 28-139 83-176 (176)
339 TIGR01501 MthylAspMutase methy 40.6 2E+02 0.0043 23.3 8.6 38 11-49 2-39 (134)
340 cd02034 CooC The accessory pro 40.5 65 0.0014 25.2 4.9 37 12-49 1-37 (116)
341 TIGR01861 ANFD nitrogenase iro 40.4 3.5E+02 0.0077 27.6 11.2 30 105-138 392-421 (513)
342 cd01141 TroA_d Periplasmic bin 40.4 46 0.00099 28.3 4.4 34 106-140 64-99 (186)
343 PF04127 DFP: DNA / pantothena 40.2 30 0.00066 29.8 3.1 34 13-49 20-53 (185)
344 PF05728 UPF0227: Uncharacteri 40.2 90 0.002 26.9 6.1 41 102-143 48-91 (187)
345 PRK10422 lipopolysaccharide co 40.2 2.4E+02 0.0051 26.9 9.7 34 103-141 256-289 (352)
346 PF09334 tRNA-synt_1g: tRNA sy 40.1 89 0.0019 30.6 6.7 29 20-49 15-46 (391)
347 cd01018 ZntC Metal binding pro 40.1 2.9E+02 0.0063 25.2 12.1 41 102-143 208-250 (266)
348 COG4007 Predicted dehydrogenas 40.0 49 0.0011 30.0 4.3 88 29-126 35-122 (340)
349 COG0438 RfaG Glycosyltransfera 39.1 2.3E+02 0.0049 25.8 9.4 45 345-391 257-308 (381)
350 cd03789 GT1_LPS_heptosyltransf 38.8 1.7E+02 0.0036 26.8 8.2 88 24-142 139-226 (279)
351 PRK12743 oxidoreductase; Provi 38.6 2E+02 0.0042 25.8 8.5 21 28-49 16-36 (256)
352 COG2987 HutU Urocanate hydrata 38.5 76 0.0017 31.1 5.7 51 339-390 457-510 (561)
353 PF06180 CbiK: Cobalt chelatas 38.4 49 0.0011 30.3 4.3 39 273-311 2-43 (262)
354 TIGR00750 lao LAO/AO transport 38.3 2.1E+02 0.0046 26.7 8.8 39 10-49 34-72 (300)
355 PRK08533 flagellar accessory p 38.0 2.1E+02 0.0046 25.5 8.4 38 11-49 25-62 (230)
356 PRK06456 acetolactate synthase 37.9 35 0.00076 35.3 3.8 25 366-390 71-101 (572)
357 cd07038 TPP_PYR_PDC_IPDC_like 37.5 12 0.00025 31.5 0.1 26 365-390 61-92 (162)
358 PRK05579 bifunctional phosphop 37.3 62 0.0013 31.7 5.1 39 9-49 5-43 (399)
359 TIGR01279 DPOR_bchN light-inde 37.3 3E+02 0.0064 27.1 10.0 78 10-120 274-351 (407)
360 KOG0832 Mitochondrial/chloropl 37.2 19 0.00041 31.7 1.4 113 20-144 90-207 (251)
361 TIGR02919 accessory Sec system 37.2 35 0.00075 33.9 3.4 47 345-391 328-379 (438)
362 TIGR01286 nifK nitrogenase mol 37.1 4E+02 0.0086 27.2 11.0 35 102-140 428-462 (515)
363 cd02065 B12-binding_like B12 b 37.0 1.5E+02 0.0032 23.0 6.6 36 13-49 2-37 (125)
364 PRK13869 plasmid-partitioning 37.0 65 0.0014 31.7 5.3 40 9-49 119-160 (405)
365 PF01695 IstB_IS21: IstB-like 37.0 69 0.0015 27.3 4.9 39 10-49 47-85 (178)
366 PRK00005 fmt methionyl-tRNA fo 36.8 2E+02 0.0043 27.1 8.3 100 11-142 1-109 (309)
367 TIGR00639 PurN phosphoribosylg 36.8 2.8E+02 0.006 24.0 11.5 86 11-121 1-88 (190)
368 PRK07206 hypothetical protein; 36.8 1.3E+02 0.0029 29.4 7.6 32 12-49 4-35 (416)
369 PRK06988 putative formyltransf 36.6 2.1E+02 0.0045 27.0 8.4 100 11-142 3-108 (312)
370 COG2861 Uncharacterized protei 36.6 3.2E+02 0.0069 24.6 9.2 37 102-138 139-178 (250)
371 PRK08322 acetolactate synthase 36.1 33 0.00072 35.2 3.2 27 364-390 64-96 (547)
372 cd01976 Nitrogenase_MoFe_alpha 36.1 46 0.001 32.9 4.1 35 102-140 360-394 (421)
373 PRK06731 flhF flagellar biosyn 36.0 3.1E+02 0.0067 25.3 9.2 39 10-49 75-113 (270)
374 CHL00072 chlL photochlorophyll 35.6 69 0.0015 29.8 5.0 38 11-49 1-38 (290)
375 cd01983 Fer4_NifH The Fer4_Nif 35.4 87 0.0019 22.6 4.8 33 13-46 2-34 (99)
376 PF06506 PrpR_N: Propionate ca 35.2 1.5E+02 0.0032 25.1 6.7 110 22-145 17-155 (176)
377 cd00672 CysRS_core catalytic c 35.2 3.2E+02 0.0068 24.1 10.4 90 20-136 35-129 (213)
378 COG2159 Predicted metal-depend 35.1 1.9E+02 0.0041 27.0 7.8 70 241-310 97-166 (293)
379 PTZ00445 p36-lilke protein; Pr 35.0 2E+02 0.0043 25.5 7.2 113 22-141 74-206 (219)
380 PRK14092 2-amino-4-hydroxy-6-h 35.0 87 0.0019 26.4 5.0 31 270-300 5-35 (163)
381 cd03412 CbiK_N Anaerobic cobal 34.9 80 0.0017 25.2 4.6 38 273-310 2-41 (127)
382 PRK07454 short chain dehydroge 34.8 3.2E+02 0.0069 24.0 10.3 37 9-49 4-40 (241)
383 cd02032 Bchl_like This family 34.7 66 0.0014 29.3 4.7 38 11-49 1-38 (267)
384 PRK11269 glyoxylate carboligas 34.7 35 0.00075 35.5 3.1 27 364-390 69-101 (591)
385 PRK09134 short chain dehydroge 34.6 3.3E+02 0.0073 24.2 10.3 36 9-48 7-42 (258)
386 TIGR02113 coaC_strep phosphopa 34.4 50 0.0011 28.2 3.5 36 12-49 2-37 (177)
387 PRK05632 phosphate acetyltrans 34.4 4.3E+02 0.0093 28.1 11.2 37 12-49 4-41 (684)
388 COG2205 KdpD Osmosensitive K+ 34.3 2.1E+02 0.0046 30.7 8.5 40 9-49 21-60 (890)
389 PF13481 AAA_25: AAA domain; P 34.0 2.4E+02 0.0053 23.8 8.0 37 12-49 34-80 (193)
390 PRK13011 formyltetrahydrofolat 33.9 3.9E+02 0.0085 24.8 10.9 104 7-137 86-191 (286)
391 TIGR00521 coaBC_dfp phosphopan 33.8 62 0.0013 31.6 4.5 38 10-49 3-40 (390)
392 TIGR02482 PFKA_ATP 6-phosphofr 33.8 33 0.00072 32.1 2.5 41 358-398 86-130 (301)
393 PRK06732 phosphopantothenate-- 33.7 51 0.0011 29.5 3.7 34 13-49 17-50 (229)
394 cd06533 Glyco_transf_WecG_TagA 33.7 2.9E+02 0.0063 23.3 10.1 91 26-137 34-128 (171)
395 PF01497 Peripla_BP_2: Peripla 33.5 59 0.0013 28.7 4.1 38 105-143 54-93 (238)
396 cd00316 Oxidoreductase_nitroge 33.2 4.1E+02 0.009 25.7 10.4 35 102-140 339-373 (399)
397 PF02571 CbiJ: Precorrin-6x re 33.2 1.5E+02 0.0033 26.9 6.6 38 103-141 186-227 (249)
398 TIGR01281 DPOR_bchL light-inde 33.1 74 0.0016 29.0 4.8 37 11-48 1-37 (268)
399 PF13561 adh_short_C2: Enoyl-( 33.1 1.6E+02 0.0034 26.1 6.9 36 28-64 10-45 (241)
400 PRK04148 hypothetical protein; 33.1 1.7E+02 0.0036 23.8 6.1 34 9-49 16-49 (134)
401 TIGR00640 acid_CoA_mut_C methy 33.0 2.6E+02 0.0056 22.5 8.9 40 9-49 1-40 (132)
402 PRK09354 recA recombinase A; P 32.9 1.4E+02 0.0031 28.6 6.7 86 13-122 63-148 (349)
403 cd01393 recA_like RecA is a b 32.9 2.4E+02 0.0053 24.6 8.0 50 12-62 21-76 (226)
404 PRK12825 fabG 3-ketoacyl-(acyl 32.9 2.6E+02 0.0056 24.5 8.3 34 11-49 7-40 (249)
405 PRK13604 luxD acyl transferase 32.6 98 0.0021 29.1 5.4 38 9-47 35-72 (307)
406 PRK12723 flagellar biosynthesi 32.6 4.3E+02 0.0093 25.9 10.0 40 10-49 174-216 (388)
407 PRK02155 ppnK NAD(+)/NADH kina 32.6 1.5E+02 0.0034 27.5 6.7 32 358-391 60-95 (291)
408 PRK06701 short chain dehydroge 32.2 2.9E+02 0.0062 25.5 8.6 22 27-49 59-80 (290)
409 PF10649 DUF2478: Protein of u 32.1 2.1E+02 0.0045 24.0 6.7 113 16-143 4-133 (159)
410 TIGR02201 heptsyl_trn_III lipo 31.8 4.5E+02 0.0097 24.9 12.2 89 24-141 199-287 (344)
411 cd07037 TPP_PYR_MenD Pyrimidin 31.8 42 0.00091 28.2 2.6 25 366-390 63-93 (162)
412 TIGR00345 arsA arsenite-activa 31.7 1.9E+02 0.0042 26.7 7.3 21 28-49 3-23 (284)
413 PRK00039 ruvC Holliday junctio 31.7 1.4E+02 0.0031 25.1 5.8 47 95-143 46-107 (164)
414 PRK05299 rpsB 30S ribosomal pr 31.7 1.7E+02 0.0036 26.8 6.6 33 112-144 157-191 (258)
415 PRK06882 acetolactate synthase 31.4 44 0.00095 34.6 3.3 27 364-390 68-100 (574)
416 COG2085 Predicted dinucleotide 31.4 91 0.002 27.4 4.6 32 12-49 3-34 (211)
417 TIGR01918 various_sel_PB selen 31.3 1.1E+02 0.0023 30.0 5.5 42 97-140 63-114 (431)
418 COG2210 Peroxiredoxin family p 31.2 78 0.0017 25.7 3.8 35 14-49 7-41 (137)
419 TIGR01917 gly_red_sel_B glycin 31.2 1.1E+02 0.0023 30.0 5.5 43 96-140 62-114 (431)
420 KOG2825 Putative arsenite-tran 31.1 1.5E+02 0.0032 27.0 5.9 41 8-49 16-57 (323)
421 TIGR01830 3oxo_ACP_reduc 3-oxo 31.0 3.3E+02 0.007 23.7 8.6 22 27-49 11-32 (239)
422 PRK11914 diacylglycerol kinase 31.0 1.2E+02 0.0025 28.5 5.8 29 361-391 64-96 (306)
423 PF02776 TPP_enzyme_N: Thiamin 30.8 60 0.0013 27.4 3.5 26 366-391 67-98 (172)
424 COG2910 Putative NADH-flavin r 30.6 48 0.0011 28.5 2.7 34 11-49 1-34 (211)
425 PRK11889 flhF flagellar biosyn 30.5 5.5E+02 0.012 25.4 14.0 39 10-49 241-279 (436)
426 PRK00207 sulfur transfer compl 30.4 97 0.0021 24.8 4.4 38 11-49 1-42 (128)
427 KOG2941 Beta-1,4-mannosyltrans 30.1 5.1E+02 0.011 25.0 14.6 129 7-146 9-142 (444)
428 TIGR00118 acolac_lg acetolacta 30.1 39 0.00086 34.8 2.6 27 364-390 65-97 (558)
429 PRK02645 ppnK inorganic polyph 30.1 1.6E+02 0.0034 27.7 6.4 30 360-391 56-89 (305)
430 PRK08818 prephenate dehydrogen 30.1 5.2E+02 0.011 25.1 11.6 106 9-142 3-111 (370)
431 PF13450 NAD_binding_8: NAD(P) 29.9 65 0.0014 22.4 3.0 21 28-49 9-29 (68)
432 PRK06935 2-deoxy-D-gluconate 3 29.9 3.6E+02 0.0077 24.1 8.8 34 12-49 16-49 (258)
433 COG3640 CooC CO dehydrogenase 29.9 1.8E+02 0.0038 26.3 6.1 42 11-52 1-42 (255)
434 PRK12935 acetoacetyl-CoA reduc 29.9 2.9E+02 0.0063 24.3 8.1 32 12-47 7-38 (247)
435 cd01147 HemV-2 Metal binding p 29.7 84 0.0018 28.3 4.5 37 105-142 68-107 (262)
436 PF09314 DUF1972: Domain of un 29.7 3.7E+02 0.0079 23.2 9.4 37 12-49 3-44 (185)
437 TIGR00147 lipid kinase, YegS/R 29.6 2E+02 0.0044 26.6 7.1 29 361-391 57-91 (293)
438 KOG0081 GTPase Rab27, small G 29.2 1.2E+02 0.0027 25.2 4.7 42 102-143 108-165 (219)
439 cd03146 GAT1_Peptidase_E Type 29.1 3.9E+02 0.0085 23.4 9.7 47 258-306 16-65 (212)
440 COG1691 NCAIR mutase (PurE)-re 29.1 2E+02 0.0043 25.6 6.2 80 273-391 118-203 (254)
441 PRK05867 short chain dehydroge 28.7 3.1E+02 0.0066 24.4 8.1 34 12-49 10-43 (253)
442 PRK12448 dihydroxy-acid dehydr 28.6 3.8E+02 0.0083 27.8 9.1 45 98-143 98-146 (615)
443 TIGR03453 partition_RepA plasm 28.5 1.1E+02 0.0023 29.9 5.2 40 9-49 102-143 (387)
444 PRK06835 DNA replication prote 28.5 1.1E+02 0.0024 29.1 5.1 38 11-49 184-221 (329)
445 PLN02285 methionyl-tRNA formyl 28.5 3.8E+02 0.0082 25.6 8.8 42 7-49 3-45 (334)
446 cd00763 Bacterial_PFK Phosphof 28.3 47 0.001 31.4 2.6 40 357-396 86-128 (317)
447 PRK08979 acetolactate synthase 28.3 51 0.0011 34.1 3.1 27 364-390 68-100 (572)
448 TIGR01011 rpsB_bact ribosomal 28.2 2.6E+02 0.0055 25.0 7.1 33 112-144 155-189 (225)
449 PRK09361 radB DNA repair and r 28.2 1.9E+02 0.0041 25.4 6.4 36 12-48 25-60 (225)
450 PRK12939 short chain dehydroge 28.2 3.4E+02 0.0073 23.9 8.2 22 27-49 20-41 (250)
451 PF04244 DPRP: Deoxyribodipyri 28.2 65 0.0014 28.7 3.3 26 23-49 47-72 (224)
452 PF01210 NAD_Gly3P_dh_N: NAD-d 28.1 36 0.00078 28.3 1.6 31 13-49 2-32 (157)
453 cd07025 Peptidase_S66 LD-Carbo 27.9 1.2E+02 0.0025 28.2 5.1 75 285-393 46-122 (282)
454 TIGR00730 conserved hypothetic 27.9 3.3E+02 0.0071 23.3 7.4 33 357-390 92-133 (178)
455 COG2179 Predicted hydrolase of 27.8 3.8E+02 0.0082 22.7 8.6 98 16-142 40-140 (175)
456 PRK00911 dihydroxy-acid dehydr 27.7 3.2E+02 0.007 28.0 8.3 45 98-143 96-144 (552)
457 PF14336 DUF4392: Domain of un 27.7 68 0.0015 29.9 3.5 40 9-49 39-86 (291)
458 cd01143 YvrC Periplasmic bindi 27.7 1E+02 0.0023 26.1 4.6 35 106-141 55-90 (195)
459 PRK06522 2-dehydropantoate 2-r 27.6 68 0.0015 29.8 3.6 32 11-48 1-32 (304)
460 TIGR02238 recomb_DMC1 meiotic 27.6 4.1E+02 0.0089 25.0 8.7 51 13-64 99-155 (313)
461 PHA02519 plasmid partition pro 27.5 1.1E+02 0.0025 29.8 5.2 37 9-46 104-142 (387)
462 TIGR02483 PFK_mixed phosphofru 27.5 50 0.0011 31.3 2.6 39 357-395 88-129 (324)
463 PRK06114 short chain dehydroge 27.3 4.4E+02 0.0096 23.4 10.3 33 12-48 9-41 (254)
464 cd03115 SRP The signal recogni 27.3 1.3E+02 0.0028 25.2 5.0 36 13-49 3-38 (173)
465 PF04493 Endonuclease_5: Endon 27.2 1.1E+02 0.0024 26.8 4.6 44 97-141 74-125 (206)
466 PRK13982 bifunctional SbtC-lik 27.2 1E+02 0.0022 31.0 4.7 38 10-49 70-107 (475)
467 PRK07478 short chain dehydroge 27.1 3.6E+02 0.0078 23.9 8.3 34 12-49 7-40 (254)
468 PRK12937 short chain dehydroge 27.1 3.4E+02 0.0074 23.8 8.0 21 28-49 19-39 (245)
469 TIGR00877 purD phosphoribosyla 27.0 3.8E+02 0.0082 26.3 8.9 90 11-138 1-93 (423)
470 PRK12745 3-ketoacyl-(acyl-carr 26.8 4.1E+02 0.009 23.5 8.6 33 12-48 3-35 (256)
471 TIGR02700 flavo_MJ0208 archaeo 26.8 1.2E+02 0.0026 27.2 4.8 37 13-49 2-39 (234)
472 PRK13057 putative lipid kinase 26.7 1.3E+02 0.0028 27.8 5.3 30 360-391 49-82 (287)
473 PRK08978 acetolactate synthase 26.7 38 0.00083 34.8 1.9 25 366-390 66-96 (548)
474 COG0125 Tmk Thymidylate kinase 26.7 4.4E+02 0.0096 23.1 9.0 39 10-49 3-41 (208)
475 PRK13054 lipid kinase; Reviewe 26.6 2.3E+02 0.005 26.3 7.0 79 274-392 7-93 (300)
476 PRK13059 putative lipid kinase 26.5 2.2E+02 0.0048 26.5 6.8 29 361-391 56-90 (295)
477 PLN02496 probable phosphopanto 26.5 1.1E+02 0.0025 26.8 4.4 39 8-49 17-55 (209)
478 TIGR03445 mycothiol_MshB 1D-my 26.4 2.1E+02 0.0046 26.5 6.5 16 102-118 114-129 (284)
479 COG1759 5-formaminoimidazole-4 26.4 1.9E+02 0.0042 27.2 6.0 139 259-427 4-156 (361)
480 PRK10037 cell division protein 26.2 1E+02 0.0022 27.8 4.4 36 13-49 4-40 (250)
481 cd01421 IMPCH Inosine monophos 26.2 3.1E+02 0.0068 23.6 6.9 38 25-73 11-48 (187)
482 cd03416 CbiX_SirB_N Sirohydroc 26.0 2E+02 0.0042 21.5 5.3 36 273-308 1-38 (101)
483 PF01297 TroA: Periplasmic sol 26.0 2.4E+02 0.0051 25.5 6.8 79 40-141 150-230 (256)
484 PRK14071 6-phosphofructokinase 25.9 53 0.0011 31.7 2.5 41 357-397 101-145 (360)
485 COG0300 DltE Short-chain dehyd 25.8 2.9E+02 0.0063 25.3 7.1 36 10-49 5-40 (265)
486 PF03796 DnaB_C: DnaB-like hel 25.7 1.4E+02 0.003 27.1 5.1 38 12-49 21-58 (259)
487 PRK09620 hypothetical protein; 25.7 1.2E+02 0.0025 27.2 4.5 32 15-49 22-53 (229)
488 PRK07890 short chain dehydroge 25.7 3.7E+02 0.008 23.8 8.1 22 27-49 18-39 (258)
489 cd07039 TPP_PYR_POX Pyrimidine 25.6 62 0.0013 27.2 2.6 26 365-390 65-96 (164)
490 cd02037 MRP-like MRP (Multiple 25.6 1.2E+02 0.0027 25.2 4.5 31 18-49 8-38 (169)
491 COG0299 PurN Folate-dependent 25.5 1E+02 0.0022 26.7 3.8 38 101-139 12-56 (200)
492 PRK00885 phosphoribosylamine-- 25.5 1E+02 0.0022 30.4 4.5 32 11-47 1-32 (420)
493 TIGR02193 heptsyl_trn_I lipopo 25.5 4.9E+02 0.011 24.2 9.1 34 103-141 248-281 (319)
494 PF01656 CbiA: CobQ/CobB/MinD/ 25.4 1.1E+02 0.0025 25.8 4.4 31 18-49 7-37 (195)
495 TIGR00110 ilvD dihydroxy-acid 25.4 4E+02 0.0086 27.3 8.5 46 97-143 75-124 (535)
496 cd02015 TPP_AHAS Thiamine pyro 25.3 2.2E+02 0.0048 24.2 6.1 59 366-428 100-161 (186)
497 PRK08063 enoyl-(acyl carrier p 25.3 3.8E+02 0.0083 23.6 8.1 20 27-47 17-36 (250)
498 cd01017 AdcA Metal binding pro 25.2 5.4E+02 0.012 23.6 10.0 39 102-141 211-251 (282)
499 PRK07449 2-succinyl-5-enolpyru 25.2 1.7E+02 0.0037 30.2 6.3 25 366-390 75-105 (568)
500 COG2099 CobK Precorrin-6x redu 25.2 1E+02 0.0022 28.0 3.9 38 103-141 188-230 (257)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=9.5e-63 Score=480.76 Aligned_cols=416 Identities=41% Similarity=0.786 Sum_probs=313.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHH-hcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCC-CCch
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLV-INHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTR-DDMP 86 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (436)
.++||+++|+|++||++|++.||+.|+ ++ |+.|||++++.+.. ......... .++.++.++.+...++ + .+.+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~-g~~vT~v~t~~n~~--~~~~~~~~~-~~i~~~~lp~p~~~gl-p~~~~~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANH-GFHVTVFVLETDAA--SAQSKFLNS-TGVDIVGLPSPDISGL-VDPSAH 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCC-CcEEEEEeCCCchh--hhhhccccC-CCceEEECCCccccCC-CCCCcc
Confidence 357999999999999999999999998 66 99999999998321 111111111 1488999997666555 4 3333
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCC
Q 047445 87 VITRLHAIVDESLKSSLKAVLIELC-NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFF 165 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (436)
....+........+ .++++++++. +|+|||+|.+++|+..+|+++|||++.|++++++.++...+.+........+..
T Consensus 79 ~~~~~~~~~~~~~~-~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~ 157 (481)
T PLN02992 79 VVTKIGVIMREAVP-TLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHT 157 (481)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccc
Confidence 33444455555566 8889998754 789999999999999999999999999999999888776666532222111111
Q ss_pred CCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeee
Q 047445 166 DLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPI 245 (436)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~V 245 (436)
.....+.+||+++++..+++..+..+....+..+.+.......++++++|||.+||+..++.+......++...++++.|
T Consensus 158 ~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~V 237 (481)
T PLN02992 158 VQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPI 237 (481)
T ss_pred cCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEe
Confidence 11234568998888888888655444434456666666677889999999999999999988865312221112569999
Q ss_pred ccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccc-cccCC
Q 047445 246 GPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASAT-FFNVG 324 (436)
Q Consensus 246 Gpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 324 (436)
||++..... ...+++|.+||++++.++||||||||...++.+++++++.+|+.++++|||+++.+...+.... +...+
T Consensus 238 GPl~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~ 316 (481)
T PLN02992 238 GPLCRPIQS-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANG 316 (481)
T ss_pred cCccCCcCC-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcc
Confidence 999754221 2345679999999988999999999999999999999999999999999999975321000000 00000
Q ss_pred CCCC-CccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHH
Q 047445 325 SDVN-DPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLT 403 (436)
Q Consensus 325 ~~~~-~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~ 403 (436)
++.. +....+|++|.+|++++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 317 ~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~ 396 (481)
T PLN02992 317 GETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLS 396 (481)
T ss_pred cccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHH
Confidence 0000 112458999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhhcceeeec----cccccccccccccccCCC
Q 047445 404 EETRGGRKAS----NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 404 ~~~G~g~~~~----~~~~~~~~~~~~~~~~~~ 431 (436)
+.+|+|+++. .++.+++.++++++..++
T Consensus 397 ~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 397 DELGIAVRSDDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred HHhCeeEEecCCCCcccHHHHHHHHHHHhcCC
Confidence 4478887774 378899999999987654
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=9e-62 Score=471.15 Aligned_cols=414 Identities=38% Similarity=0.735 Sum_probs=312.8
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcC--CCCceEEecCCCCCCCCCCCCch
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSL--PDGLDVVDLPPVDVSAVTRDDMP 86 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 86 (436)
.+.||+++|+|++||++|++.||+.|+.++|..|||++++.+.+........... .++++++.+++...+++.+.+.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 4569999999999999999999999997558999999988632211001111111 11489999987654443122223
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCCcchHHHHHHHcCCC-eEEEecchHHHHHHHhhhccchhcccCCC
Q 047445 87 VITRLHAIVDESLKSSLKAVLIELC-NPRALVIDLFCTQAFEICSQLSIP-TYSFVTTSIHFFAFALYLPTLDREVQGEF 164 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (436)
....+...+....+ .++++|+++. +++|||+|.+++|+..+|+++||| .+.+++++++.+..+.+++........+.
T Consensus 82 ~~~~~~~~~~~~~~-~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~ 160 (470)
T PLN03015 82 IFTKMVVKMRAMKP-AVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEY 160 (470)
T ss_pred HHHHHHHHHHhchH-HHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccccc
Confidence 44456666666666 8999999875 789999999999999999999999 58888888888777776654332212211
Q ss_pred CCCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeee
Q 047445 165 FDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYP 244 (436)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~ 244 (436)
....+.+.+||++++...+++..+.++....+..+.+......+++++++|||++||+..++.+.+...+++-..++++.
T Consensus 161 ~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~ 240 (470)
T PLN03015 161 VDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYP 240 (470)
T ss_pred CCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEE
Confidence 11224466899999999999876644433335555566667888999999999999999988887631111101256999
Q ss_pred eccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCC
Q 047445 245 IGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVG 324 (436)
Q Consensus 245 VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 324 (436)
|||++..... .+.+++|.+||++++.++||||||||...++.+++++++.+|+.++++|||+++.+..... . ..
T Consensus 241 VGPl~~~~~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~--~---~~ 314 (470)
T PLN03015 241 IGPIVRTNVH-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLG--A---SS 314 (470)
T ss_pred ecCCCCCccc-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccc--c---cc
Confidence 9999753221 1234579999999988999999999999999999999999999999999999975321000 0 00
Q ss_pred CCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHh
Q 047445 325 SDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTE 404 (436)
Q Consensus 325 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~ 404 (436)
.+..+....+|++|.+|++++++++.+|+||.++|+|++|++|||||||||++||+++|||||++|++.||+.||+++++
T Consensus 315 ~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~ 394 (470)
T PLN03015 315 SDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTE 394 (470)
T ss_pred ccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHH
Confidence 00001224689999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hhcceeeec------cccccccccccccccC
Q 047445 405 ETRGGRKAS------NRIGKESDRTGRDREG 429 (436)
Q Consensus 405 ~~G~g~~~~------~~~~~~~~~~~~~~~~ 429 (436)
.+|+|+++. ..+.+++.++++++..
T Consensus 395 ~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 395 EIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred HhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 789998884 3688888899988774
No 3
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=5.5e-61 Score=472.83 Aligned_cols=412 Identities=37% Similarity=0.623 Sum_probs=310.3
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCC----CeEEEEEcCCCCc--hhHHHHHhh---cCCCCceEEecCCCCCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHG----VHVRFLVITTNEA--SAAQEKLLR---SLPDGLDVVDLPPVDVS 78 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~G----h~Vt~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~ 78 (436)
+.+.|||++|+|++||++|++.||+.|+.+ | +.|||++++.+.+ ..+...... ..+..+.|+.+|+..
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE-- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC--
Confidence 356799999999999999999999999998 6 7999999987433 112222211 111148899998653
Q ss_pred CCCCCCchHH-HHHHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccc
Q 047445 79 AVTRDDMPVI-TRLHAIVDESLKSSLKAVLIELC-NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTL 156 (436)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 156 (436)
. +++.+.. ..+..+.....+ .++++++++. +++|||+|.+++|+..+|+++|||++.|++++++.++.+.+++..
T Consensus 78 -~-p~~~e~~~~~~~~~~~~~~~-~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 78 -P-PTDAAGVEEFISRYIQLHAP-HVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred -C-CCccccHHHHHHHHHHhhhH-HHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 2 3333222 233335555566 8888888763 469999999999999999999999999999999999888877543
Q ss_pred hhcccCCCCCCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCC
Q 047445 157 DREVQGEFFDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQ 236 (436)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 236 (436)
......++......+.+||+++++..+++..+..+....+..+....+...+++++++|||.+||+..++.++.......
T Consensus 155 ~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~ 234 (480)
T PLN00164 155 DEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPG 234 (480)
T ss_pred cccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccccc
Confidence 32222112111234558999888888998766544333345555555667789999999999999999988876421111
Q ss_pred CCCCCeeeeccCccCCC--CCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 047445 237 IPTPPIYPIGPLIKQDE--TLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDA 314 (436)
Q Consensus 237 ~~~p~v~~VGpl~~~~~--~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 314 (436)
...|+++.|||++.... .....+++|.+||+.++.++||||||||....+.+++++++.+|+.++++|||+++.....
T Consensus 235 ~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~ 314 (480)
T PLN00164 235 RPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAA 314 (480)
T ss_pred CCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 11357999999974321 1123567899999999889999999999999999999999999999999999999864210
Q ss_pred CcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeecccccc
Q 047445 315 SASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAE 394 (436)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~D 394 (436)
. .....+ . +....+|++|.++.+++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++|
T Consensus 315 ---~-~~~~~~-~-~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~D 388 (480)
T PLN00164 315 ---G-SRHPTD-A-DLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAE 388 (480)
T ss_pred ---c-cccccc-c-chhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcccc
Confidence 0 000000 0 112358999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhhcceeeec-------cccccccccccccccCCC
Q 047445 395 QKMNAAMLTEETRGGRKAS-------NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 395 Q~~nA~~v~~~~G~g~~~~-------~~~~~~~~~~~~~~~~~~ 431 (436)
|+.||+++++.+|+|+++. ..+.+++.+++++++.++
T Consensus 389 Q~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~ 432 (480)
T PLN00164 389 QHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGG 432 (480)
T ss_pred chhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCC
Confidence 9999998865578887763 257889999999987654
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-60 Score=465.54 Aligned_cols=395 Identities=25% Similarity=0.386 Sum_probs=297.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchH-
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV- 87 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (436)
.+.||+++|+|++||++|++.||+.|+.| |+.|||++++.+. .............++++.++.+..+++ |++.+.
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~--~~~~~~~~~~~~~i~~~~lp~p~~dgl-p~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNL--HRLPKIPSQLSSSITLVSFPLPSVPGL-PSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchH--HhhhhccccCCCCeeEEECCCCccCCC-CCCcccc
Confidence 45799999999999999999999999999 9999999999822 222211111222489999997665555 543221
Q ss_pred --H-----HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcc
Q 047445 88 --I-----TRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREV 160 (436)
Q Consensus 88 --~-----~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (436)
. ..+....+...+ .+++++++. +++|||+|.++.|+..+|+++|||++.|++++++.++.+.+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~- 157 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEP-PLTTFLETS-KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG- 157 (472)
T ss_pred cccchhhHHHHHHHHHHhHH-HHHHHHHhC-CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc-
Confidence 1 123344445556 888999888 999999999999999999999999999999998888776543221111
Q ss_pred cCCCCCCCCcc-ccCCCCC------CCccccchhhhcc--CchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhc
Q 047445 161 QGEFFDLPEPI-EIPGCPP------VRPEDLLDQVRNR--KIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREH 231 (436)
Q Consensus 161 ~~~~~~~~~~~-~~p~~~~------~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (436)
++.....+.. .+|++.| +...+++.++... ....+..+.+......+++++++|||++||+.+++.++..
T Consensus 158 -~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 158 -GDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred -ccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 1111111111 2444322 3445666555321 1122344445555667889999999999999999988763
Q ss_pred cccCCCCC-CCeeeeccCccCC-C-C-CC----CChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCc
Q 047445 232 SFYLQIPT-PPIYPIGPLIKQD-E-T-LS----ASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQR 303 (436)
Q Consensus 232 ~~~~~~~~-p~v~~VGpl~~~~-~-~-~~----~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~ 303 (436)
. ++++.|||+.... . . .. ...++|.+||+++++++||||||||+...+.+++++++.+|+.++++
T Consensus 237 -------~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~ 309 (472)
T PLN02670 237 -------YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETP 309 (472)
T ss_pred -------hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCC
Confidence 2 4799999997531 1 1 11 11257999999998889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcC
Q 047445 304 FIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHG 383 (436)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~G 383 (436)
|||+++..... +.+....+|++|.++.+++++++.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 310 FlWv~r~~~~~------------~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~G 377 (472)
T PLN02670 310 FFWVLRNEPGT------------TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFG 377 (472)
T ss_pred EEEEEcCCccc------------ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcC
Confidence 99999863210 002224699999999999999999999999999999999999999999999999999
Q ss_pred CcEeeccccccchhHHHHHHhhhcceeeecc------ccccccccccccccCCC
Q 047445 384 VPMIAWPLYAEQKMNAAMLTEETRGGRKASN------RIGKESDRTGRDREGSE 431 (436)
Q Consensus 384 vP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~------~~~~~~~~~~~~~~~~~ 431 (436)
||||++|+++||+.||+++++ +|+|+++.. ++.+++.+++++++.++
T Consensus 378 VP~l~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~ 430 (472)
T PLN02670 378 RVLILFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDD 430 (472)
T ss_pred CCEEeCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCc
Confidence 999999999999999999976 677776642 67889999999998654
No 5
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-60 Score=463.57 Aligned_cols=405 Identities=36% Similarity=0.656 Sum_probs=301.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCC--CeEEEEEcCCCCchhHHHHHhhc---CCCCceEEecCCCCC-CCCCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHG--VHVRFLVITTNEASAAQEKLLRS---LPDGLDVVDLPPVDV-SAVTR 82 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~G--h~Vt~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~ 82 (436)
.+-||+++|+|++||++|++.||+.|+.+ | +.||+.....+.+........+. ...+++|+.+++... .+. .
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 79 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSS-S 79 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCc-c
Confidence 35699999999999999999999999998 8 56777554442221111111111 112589999886432 111 1
Q ss_pred CCc-hHHHHHHHHHHHhhhHHHHHHHHhc-C--CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchh
Q 047445 83 DDM-PVITRLHAIVDESLKSSLKAVLIEL-C--NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDR 158 (436)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~~~l~~ll~~~-~--~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 158 (436)
... .....+......... .++++++++ . +++|||+|.+++|+..+|+++|||++.|++++++.++.+.+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNP-SVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred ccccCHHHHHHHHHHhhhH-HHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 111 222334444455556 788888876 2 45999999999999999999999999999999999988877654322
Q ss_pred cccCCCCCCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCC
Q 047445 159 EVQGEFFDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIP 238 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 238 (436)
............+.+||++++...+++..+..+....+..+.+.......++++++|||++||+..++.+.... .
T Consensus 159 ~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~--~--- 233 (451)
T PLN03004 159 TTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL--C--- 233 (451)
T ss_pred cccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC--C---
Confidence 21111001112356899988888999877654443344555566666778899999999999999998886531 1
Q ss_pred CCCeeeeccCccCCCC---CCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCC
Q 047445 239 TPPIYPIGPLIKQDET---LSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDAS 315 (436)
Q Consensus 239 ~p~v~~VGpl~~~~~~---~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 315 (436)
.++++.|||++..... ....+.+|.+||+.+++++||||||||+..++.+++++++.+|+.++++|||+++.....
T Consensus 234 ~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~- 312 (451)
T PLN03004 234 FRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL- 312 (451)
T ss_pred CCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc-
Confidence 2479999999753221 111235699999999889999999999999999999999999999999999999853210
Q ss_pred cccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccc
Q 047445 316 ASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQ 395 (436)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ 395 (436)
+.+..+....+|++|.+|.+++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.||
T Consensus 313 --------~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ 384 (451)
T PLN03004 313 --------EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQ 384 (451)
T ss_pred --------cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccc
Confidence 000001112489999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcceeeec-----cccccccccccccccCC
Q 047445 396 KMNAAMLTEETRGGRKAS-----NRIGKESDRTGRDREGS 430 (436)
Q Consensus 396 ~~nA~~v~~~~G~g~~~~-----~~~~~~~~~~~~~~~~~ 430 (436)
+.||+++++.+|+|+++. ..+.+++.++++++.++
T Consensus 385 ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 385 RFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE 424 (451)
T ss_pred hhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC
Confidence 999999976567777764 36888999999888754
No 6
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-60 Score=464.72 Aligned_cols=380 Identities=24% Similarity=0.339 Sum_probs=291.2
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCC---CCceEEecCCCCCCCCCCCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLP---DGLDVVDLPPVDVSAVTRDD 84 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 84 (436)
..++||+++|+|++||++|++.||+.|+++ ||+|||++++. ....+...+ ..+++..++.+..+++ +++
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~------~~~~i~~~~a~~~~i~~~~l~~p~~dgL-p~g 73 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKK------AQKQLEHHNLFPDSIVFHPLTIPPVNGL-PAG 73 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccc------hhhhhhcccCCCCceEEEEeCCCCccCC-CCC
Confidence 457899999999999999999999999998 99999999887 333232222 2456666654322344 544
Q ss_pred ch---HH-----HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccc
Q 047445 85 MP---VI-----TRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTL 156 (436)
Q Consensus 85 ~~---~~-----~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 156 (436)
.+ .. ..+........+ .++++++++ ++||||+| ++.|+..+|+++|||++.|++++++.++ +.+.+.
T Consensus 74 ~~~~~~l~~~l~~~~~~~~~~~~~-~l~~~L~~~-~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~- 148 (442)
T PLN02208 74 AETTSDIPISMDNLLSEALDLTRD-QVEAAVRAL-RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG- 148 (442)
T ss_pred cccccchhHHHHHHHHHHHHHHHH-HHHHHHhhC-CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc-
Confidence 32 11 123344555556 888999888 99999999 5789999999999999999999988765 433331
Q ss_pred hhcccCCCCCCCCccccCCCCC----CCccccchhhhccCchHHHHHHHHh-hccCCccEEEEcChhhcCchHHHHHHhc
Q 047445 157 DREVQGEFFDLPEPIEIPGCPP----VRPEDLLDQVRNRKIDEYNLFLLHI-SRLPLAAGIFLNPWENLELVPLRAIREH 231 (436)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 231 (436)
.... ..+||++. ++..+++.. ......+..+.... +...+++++++|||.+||+.+++++...
T Consensus 149 -~~~~---------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~ 216 (442)
T PLN02208 149 -GKLG---------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQ 216 (442)
T ss_pred -cccC---------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhh
Confidence 1100 11456543 344455432 12222344444333 4566899999999999999998887652
Q ss_pred cccCCCCCCCeeeeccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 047445 232 SFYLQIPTPPIYPIGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMP 311 (436)
Q Consensus 232 ~~~~~~~~p~v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 311 (436)
..|+++.|||++.....+.+.+++|.+||+.+++++||||||||...++.+++.+++.+++..+.+++|+++.+
T Consensus 217 ------~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~ 290 (442)
T PLN02208 217 ------YHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPP 290 (442)
T ss_pred ------cCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 12579999999865432234678999999999888999999999999999999999999988999999999854
Q ss_pred CCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc
Q 047445 312 SDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL 391 (436)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~ 391 (436)
... . .....+|++|.++++++|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+
T Consensus 291 ~~~------------~-~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~ 357 (442)
T PLN02208 291 RGS------------S-TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPF 357 (442)
T ss_pred Ccc------------c-chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCc
Confidence 210 0 112568999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHhhhcceeeecc-----ccccccccccccccCCC
Q 047445 392 YAEQKMNAAMLTEETRGGRKASN-----RIGKESDRTGRDREGSE 431 (436)
Q Consensus 392 ~~DQ~~nA~~v~~~~G~g~~~~~-----~~~~~~~~~~~~~~~~~ 431 (436)
++||+.||+++++++|+|+++.. ++.+++.++++++..++
T Consensus 358 ~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~ 402 (442)
T PLN02208 358 LSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKD 402 (442)
T ss_pred chhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCC
Confidence 99999999998766888888853 78899999999988654
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.7e-60 Score=466.40 Aligned_cols=397 Identities=27% Similarity=0.456 Sum_probs=301.6
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCch
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMP 86 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (436)
..+++|||++|+|++||++|++.||+.|+.+ |+.|||++++.+. .+.+......+ .+++..++.+...++ |++.+
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~--~~~~~~~~~~~-~i~~~~lp~P~~~~l-PdG~~ 80 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNL--PFLNPLLSKHP-SIETLVLPFPSHPSI-PSGVE 80 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcH--HHHhhhcccCC-CeeEEeCCCCCcCCC-CCCCc
Confidence 3467899999999999999999999999998 9999999999833 22222222222 478888876555444 55543
Q ss_pred HH--------HHHHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccch
Q 047445 87 VI--------TRLHAIVDESLKSSLKAVLIELC-NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLD 157 (436)
Q Consensus 87 ~~--------~~~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 157 (436)
.. ..+........+ .+.+++++.. +|+|||+|.+.+|+..+|+++|||++.|++++++.++.+.+++...
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~-~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALGELYA-PLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred ChhhcchhhHHHHHHHHHHhHH-HHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 21 224444455555 7777887743 7899999999999999999999999999999999999887764321
Q ss_pred hcccCCCCCCCCc---cccCCCCCCCccccchhhhc--cCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhcc
Q 047445 158 REVQGEFFDLPEP---IEIPGCPPVRPEDLLDQVRN--RKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHS 232 (436)
Q Consensus 158 ~~~~~~~~~~~~~---~~~p~~~~~~~~~l~~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (436)
... ......... ..+||+++++..+++..+.. ........+.+........+++++|||++||+.+++.++..
T Consensus 160 ~~~-~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 237 (477)
T PLN02863 160 PTK-INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE- 237 (477)
T ss_pred ccc-ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh-
Confidence 110 000011111 24788888888888875532 22223444445555556778899999999999999888764
Q ss_pred ccCCCCCCCeeeeccCccCCCC--------C--CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 047445 233 FYLQIPTPPIYPIGPLIKQDET--------L--SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQ 302 (436)
Q Consensus 233 ~~~~~~~p~v~~VGpl~~~~~~--------~--~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 302 (436)
++ .++++.|||++..... . ...+++|.+||+.+++++||||||||+...+.+++++++.+|+++++
T Consensus 238 -~~---~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~ 313 (477)
T PLN02863 238 -LG---HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGV 313 (477)
T ss_pred -cC---CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCC
Confidence 11 2579999999753210 0 11246799999999889999999999999999999999999999999
Q ss_pred cEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHc
Q 047445 303 RFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICH 382 (436)
Q Consensus 303 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~ 382 (436)
+|||+++.... .......+|++|.++.+++|+++.+|+||.+||+|++|++|||||||||++||+++
T Consensus 314 ~flw~~~~~~~-------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~ 380 (477)
T PLN02863 314 HFIWCVKEPVN-------------EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVA 380 (477)
T ss_pred cEEEEECCCcc-------------cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHc
Confidence 99999985421 00112468999999999999999999999999999999999999999999999999
Q ss_pred CCcEeeccccccchhHHHHHHhhhcceeeecc-----cccccccccccccc
Q 047445 383 GVPMIAWPLYAEQKMNAAMLTEETRGGRKASN-----RIGKESDRTGRDRE 428 (436)
Q Consensus 383 GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~-----~~~~~~~~~~~~~~ 428 (436)
|||||++|++.||+.||+++++.+|+|+++.. .+.+++.++++++.
T Consensus 381 GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m 431 (477)
T PLN02863 381 GVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESV 431 (477)
T ss_pred CCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHh
Confidence 99999999999999999998766788887732 35667777776654
No 8
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6e-60 Score=460.16 Aligned_cols=377 Identities=24% Similarity=0.332 Sum_probs=288.8
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhc---CCCCceEEecCCCCCCCCCCCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRS---LPDGLDVVDLPPVDVSAVTRDD 84 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 84 (436)
.+++|||++|+|++||++|++.||+.|+++ |++|||++++. ....++. ....++|..++.+..+++ |++
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~------~~~~i~~~~~~~~~i~~~~i~lP~~dGL-P~g 73 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKK------AHKQLQPLNLFPDSIVFEPLTLPPVDGL-PFG 73 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCc------hhhhhcccccCCCceEEEEecCCCcCCC-CCc
Confidence 567899999999999999999999999998 99999999987 2222221 112477866654433444 554
Q ss_pred chH--------HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccc
Q 047445 85 MPV--------ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTL 156 (436)
Q Consensus 85 ~~~--------~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 156 (436)
.+. ...+........+ .++++++.. +|||||+|. ++|+..+|+++|||++.|++++++.++...+..
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~-~l~~~L~~~-~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~-- 148 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRD-QIEAKVRAL-KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR-- 148 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHH-HHHHHHhcC-CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH--
Confidence 322 1123444445555 777888777 999999995 889999999999999999999998888766521
Q ss_pred hhcccCCCCCCCCccccCCCCC----CCcccc--chhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHh
Q 047445 157 DREVQGEFFDLPEPIEIPGCPP----VRPEDL--LDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIRE 230 (436)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~----~~~~~l--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (436)
.... ...|+++. ++..+. +..+ .+ ....+.+......+++++++|||.+||+..++.+.+
T Consensus 149 -~~~~---------~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 214 (446)
T PLN00414 149 -AELG---------FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIER 214 (446)
T ss_pred -hhcC---------CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHH
Confidence 1100 11244432 222221 1211 11 123333444566778999999999999999988876
Q ss_pred ccccCCCCC-CCeeeeccCccCCCC--CCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 047445 231 HSFYLQIPT-PPIYPIGPLIKQDET--LSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWV 307 (436)
Q Consensus 231 ~~~~~~~~~-p~v~~VGpl~~~~~~--~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 307 (436)
. . ++++.|||+...... ....+++|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+
T Consensus 215 ~-------~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwv 287 (446)
T PLN00414 215 Q-------CQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIA 287 (446)
T ss_pred h-------cCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3 2 369999999753321 11234679999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEe
Q 047445 308 VRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMI 387 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l 387 (436)
++.+... . +....+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 288 vr~~~~~------------~-~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l 354 (446)
T PLN00414 288 VMPPKGS------------S-TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIV 354 (446)
T ss_pred EecCCCc------------c-cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEE
Confidence 9864210 0 11246999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchhHHHHHHhhhcceeeecc-----ccccccccccccccCCC
Q 047445 388 AWPLYAEQKMNAAMLTEETRGGRKASN-----RIGKESDRTGRDREGSE 431 (436)
Q Consensus 388 ~~P~~~DQ~~nA~~v~~~~G~g~~~~~-----~~~~~~~~~~~~~~~~~ 431 (436)
++|++.||+.||+++++.+|+|++++. .+.+++.+++++++.++
T Consensus 355 ~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~ 403 (446)
T PLN00414 355 FIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKD 403 (446)
T ss_pred ecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 999999999999999766888888842 78999999999988653
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-59 Score=456.65 Aligned_cols=390 Identities=30% Similarity=0.450 Sum_probs=291.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCC----
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDD---- 84 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 84 (436)
++.||+++|+|++||++|++.||+.|+.+ |+.|||++++.+... . .... .++.|..+|+ ++ |++
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~----~-~~~~-~~i~~~~ip~----gl-p~~~~~~ 73 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFS----P-SDDF-TDFQFVTIPE----SL-PESDFKN 73 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccc----c-ccCC-CCeEEEeCCC----CC-Ccccccc
Confidence 56899999999999999999999999998 999999999984311 0 1111 2488888874 22 331
Q ss_pred chHHHHHHHHHHHhhhHHHHHHHHhc----C-CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhc
Q 047445 85 MPVITRLHAIVDESLKSSLKAVLIEL----C-NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDRE 159 (436)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~ll~~~----~-~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (436)
......+......... .++++++++ . +++|||+|.++.|+..+|+++|||++.|++++++.++++.+++.....
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 152 (451)
T PLN02410 74 LGPIEFLHKLNKECQV-SFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYAN 152 (451)
T ss_pred cCHHHHHHHHHHHhHH-HHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhc
Confidence 1222222223334444 677777664 1 579999999999999999999999999999999888777654332221
Q ss_pred cc-CCCCC--CCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCC
Q 047445 160 VQ-GEFFD--LPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQ 236 (436)
Q Consensus 160 ~~-~~~~~--~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 236 (436)
.. .+... ......+|++++++..+++...+.........+.. .....+++++++|||++||+.+++++... +
T Consensus 153 ~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~-- 227 (451)
T PLN02410 153 NVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQ--L-- 227 (451)
T ss_pred cCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhc--c--
Confidence 00 01000 11223588888888777775443222222222222 22356788999999999999999888763 1
Q ss_pred CCCCCeeeeccCccCCCCC---CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047445 237 IPTPPIYPIGPLIKQDETL---SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSD 313 (436)
Q Consensus 237 ~~~p~v~~VGpl~~~~~~~---~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 313 (436)
-+++++|||++...... .+...+|.+||++++.++||||||||....+.+++++++.+|+.++++|||+++.+..
T Consensus 228 --~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~ 305 (451)
T PLN02410 228 --QIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSV 305 (451)
T ss_pred --CCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcc
Confidence 14799999997543211 1233568999999988999999999999999999999999999999999999985321
Q ss_pred CCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccc
Q 047445 314 ASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYA 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~ 393 (436)
. +. +....+|++|.+|.++++ ++.+|+||.+||+|++|++|||||||||++||+++|||||++|++.
T Consensus 306 ~---------~~---~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 372 (451)
T PLN02410 306 R---------GS---EWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSS 372 (451)
T ss_pred c---------cc---chhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccc
Confidence 0 00 111348999999997765 4459999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhcceeee-ccccccccccccccccCCC
Q 047445 394 EQKMNAAMLTEETRGGRKA-SNRIGKESDRTGRDREGSE 431 (436)
Q Consensus 394 DQ~~nA~~v~~~~G~g~~~-~~~~~~~~~~~~~~~~~~~ 431 (436)
||+.||+++++.+|+|+++ ...+.+++.++++++++++
T Consensus 373 DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 373 DQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred cCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCC
Confidence 9999999997655777777 5688899999999987654
No 10
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.9e-59 Score=455.17 Aligned_cols=393 Identities=24% Similarity=0.394 Sum_probs=298.1
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchH
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV 87 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (436)
..+.|||++|+|++||++|++.||+.|+.+ |++||+++++.+. .......... .+++|+.+++....+. + .+
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~--~~~~~~~~~~-~~i~~v~lp~g~~~~~-~--~~- 75 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIH--RRISATLDPK-LGITFMSISDGQDDDP-P--RD- 75 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchh--hhhhhccCCC-CCEEEEECCCCCCCCc-c--cc-
Confidence 456799999999999999999999999998 9999999999821 1111111111 1488998875221111 1 12
Q ss_pred HHHHHHHHH-HhhhHHHHHHHHhcC---CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhc--cc
Q 047445 88 ITRLHAIVD-ESLKSSLKAVLIELC---NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDRE--VQ 161 (436)
Q Consensus 88 ~~~~~~~~~-~~~~~~l~~ll~~~~---~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~--~~ 161 (436)
...+...+. ...+ .+++++++++ +++|||+|.+..|+..+|+++|||++.|++++++.+....+.+..... ..
T Consensus 76 ~~~l~~a~~~~~~~-~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 154 (448)
T PLN02562 76 FFSIENSMENTMPP-QLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLIS 154 (448)
T ss_pred HHHHHHHHHHhchH-HHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccc
Confidence 223444444 3455 8888988862 348999999999999999999999999999998888776665432221 10
Q ss_pred C-CCCCCCCc-cccCCCCCCCccccchhhhcc--CchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCC
Q 047445 162 G-EFFDLPEP-IEIPGCPPVRPEDLLDQVRNR--KIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQI 237 (436)
Q Consensus 162 ~-~~~~~~~~-~~~p~~~~~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 237 (436)
. ........ ..+||+++++..+++..+... ....+..+.+..+...+++++++|||.+||+..+..+.... .++
T Consensus 155 ~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~--~~~ 232 (448)
T PLN02562 155 ETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASY--NNG 232 (448)
T ss_pred cccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhh--ccc
Confidence 0 00011112 257888878888888765322 22345666677777788999999999999998877665421 122
Q ss_pred CCCCeeeeccCccCCCC----CC--CChhHHhhhhcCCCCCeEEEEecCCCC-CCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 047445 238 PTPPIYPIGPLIKQDET----LS--ASDEECLAWLGKQPSDSVIFVAPGSGG-TLTAEQVIEMAWGLEQSKQRFIWVVRM 310 (436)
Q Consensus 238 ~~p~v~~VGpl~~~~~~----~~--~~~~~l~~~l~~~~~~~vV~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~ 310 (436)
..|+++.|||++..... .. +.+.+|.+||+++++++||||||||+. ..+.+++++++.+|++++++|||+++.
T Consensus 233 ~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~ 312 (448)
T PLN02562 233 QNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNP 312 (448)
T ss_pred cCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 24679999999764321 11 234568899999988899999999985 679999999999999999999999975
Q ss_pred CCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeecc
Q 047445 311 PSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWP 390 (436)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P 390 (436)
+.. ..+|++|.++.++ |+++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 313 ~~~------------------~~l~~~~~~~~~~-~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 373 (448)
T PLN02562 313 VWR------------------EGLPPGYVERVSK-QGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP 373 (448)
T ss_pred Cch------------------hhCCHHHHHHhcc-CEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC
Confidence 321 4588899888764 566679999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHhhhcceeeeccccccccccccccccCC
Q 047445 391 LYAEQKMNAAMLTEETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 391 ~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
+++||+.||+++++.+|+|+++++.+.+++.+++++++.+
T Consensus 374 ~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 374 VAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMED 413 (448)
T ss_pred cccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCC
Confidence 9999999999997668999999889999999999888754
No 11
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.1e-59 Score=452.13 Aligned_cols=382 Identities=24% Similarity=0.343 Sum_probs=290.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCC--CCceEEecCCCCCCCCCCCCch
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLP--DGLDVVDLPPVDVSAVTRDDMP 86 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 86 (436)
.++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+. ...... .... ..+.+..+|.. +++ |++.+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~--~~~~~~-~~~~~~~~v~~~~~p~~--~gl-p~g~e 76 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKAL--KQLEHL-NLFPHNIVFRSVTVPHV--DGL-PVGTE 76 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchh--hhhccc-ccCCCCceEEEEECCCc--CCC-CCccc
Confidence 46899999999999999999999999998 9999999999832 222221 1111 12566666642 244 54422
Q ss_pred --------HHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchh
Q 047445 87 --------VITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDR 158 (436)
Q Consensus 87 --------~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 158 (436)
....+...+....+ .+++++++. ++||||+|. +.|+..+|+++|||++.|++++++.++...+ +. .
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~-~~~~~l~~~-~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--~ 150 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRD-QVEVVVRAV-EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--G 150 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHH-HHHHHHHhC-CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--c
Confidence 12234445555556 889999988 999999995 8899999999999999999999988877653 11 0
Q ss_pred cccCCCCCCCCccccCCCCC----CCccccchhhh-ccCc--hHHHHHHH-HhhccCCccEEEEcChhhcCchHHHHHHh
Q 047445 159 EVQGEFFDLPEPIEIPGCPP----VRPEDLLDQVR-NRKI--DEYNLFLL-HISRLPLAAGIFLNPWENLELVPLRAIRE 230 (436)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~----~~~~~l~~~~~-~r~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (436)
.. . ...||++. ++..+++.... .+.. ..+..+.. ........+++++|||++||+.+++++..
T Consensus 151 ~~-------~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 151 EL-------G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred cC-------C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 00 0 11356542 44455544211 1111 11222333 33556778899999999999999988866
Q ss_pred ccccCCCCCCCeeeeccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 047445 231 HSFYLQIPTPPIYPIGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRM 310 (436)
Q Consensus 231 ~~~~~~~~~p~v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 310 (436)
. . -++++.|||++.........+++|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+++.
T Consensus 222 ~---~---~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 222 H---C---RKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred h---c---CCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 3 0 146999999975432111235789999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeecc
Q 047445 311 PSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWP 390 (436)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P 390 (436)
+... . +..+.+|++|.++++++++++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 296 ~~~~------------~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P 362 (453)
T PLN02764 296 PRGS------------S-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP 362 (453)
T ss_pred CCCC------------c-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 3210 0 11257999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHhhhcceeeec-----cccccccccccccccCCC
Q 047445 391 LYAEQKMNAAMLTEETRGGRKAS-----NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 391 ~~~DQ~~nA~~v~~~~G~g~~~~-----~~~~~~~~~~~~~~~~~~ 431 (436)
++.||+.||+++++++|+|+++. .++.+++.++++++..++
T Consensus 363 ~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 363 QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred cccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 99999999999977788888863 378899999999998653
No 12
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.4e-59 Score=450.64 Aligned_cols=374 Identities=24% Similarity=0.445 Sum_probs=289.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCC----
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDD---- 84 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 84 (436)
++.||+++|+|++||++|++.||+.|+.+ |+.|||++++.+.+ ........+++|+.+++ ++ |++
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~-----~~~~~~~~~i~~~~ipd----gl-p~~~~~~ 72 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFN-----TIHLDPSSPISIATISD----GY-DQGGFSS 72 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhh-----hcccCCCCCEEEEEcCC----CC-CCccccc
Confidence 45799999999999999999999999998 99999999997322 11111122589999874 23 331
Q ss_pred chHHHHHHH-HHHHhhhHHHHHHHHhc--C-CC-cEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhc
Q 047445 85 MPVITRLHA-IVDESLKSSLKAVLIEL--C-NP-RALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDRE 159 (436)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~~l~~ll~~~--~-~p-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (436)
.+....+.. ......+ .++++|+++ . +| +|||+|.+.+|+..+|+++|||++.|++++++.+..+.+. ....
T Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~~- 149 (449)
T PLN02173 73 AGSVPEYLQNFKTFGSK-TVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YINN- 149 (449)
T ss_pred ccCHHHHHHHHHHhhhH-HHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhcc-
Confidence 111223333 3334555 888888874 1 45 9999999999999999999999999999888777554432 1110
Q ss_pred ccCCCCCCCCccccCCCCCCCccccchhhhcc--CchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCC
Q 047445 160 VQGEFFDLPEPIEIPGCPPVRPEDLLDQVRNR--KIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQI 237 (436)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 237 (436)
+ ...+.+||++++...+++..+... ....+..+.+......+++++++|||.+||+.+++.+..
T Consensus 150 --~-----~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~------- 215 (449)
T PLN02173 150 --G-----SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK------- 215 (449)
T ss_pred --C-----CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-------
Confidence 0 122447888888888988766432 223455566666777889999999999999999888754
Q ss_pred CCCCeeeeccCccCC--------CCCC-------CChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCC
Q 047445 238 PTPPIYPIGPLIKQD--------ETLS-------ASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQ 302 (436)
Q Consensus 238 ~~p~v~~VGpl~~~~--------~~~~-------~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 302 (436)
.++++.|||+++.. .... ..++.|.+||+.++.++||||||||+...+.+++++++.+| .+.
T Consensus 216 -~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 216 -VCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred -cCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 24799999997421 0100 12356999999998899999999999999999999999999 678
Q ss_pred cEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHc
Q 047445 303 RFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICH 382 (436)
Q Consensus 303 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~ 382 (436)
+|+|+++.... ..+|++|.++.+.+|+++.+|+||.+||+|++|++|||||||||++||+++
T Consensus 293 ~flWvvr~~~~------------------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~ 354 (449)
T PLN02173 293 SYLWVVRASEE------------------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSL 354 (449)
T ss_pred CEEEEEeccch------------------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHc
Confidence 89999975321 458889999987788898899999999999999999999999999999999
Q ss_pred CCcEeeccccccchhHHHHHHhhhcceeeec--c----ccccccccccccccCCC
Q 047445 383 GVPMIAWPLYAEQKMNAAMLTEETRGGRKAS--N----RIGKESDRTGRDREGSE 431 (436)
Q Consensus 383 GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~--~----~~~~~~~~~~~~~~~~~ 431 (436)
|||||++|+++||+.||+++++.+|+|+++. . .+.+++.+++++++.++
T Consensus 355 GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 355 GVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGE 409 (449)
T ss_pred CCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCC
Confidence 9999999999999999999987556665553 1 47899999999987654
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.5e-59 Score=454.87 Aligned_cols=383 Identities=24% Similarity=0.403 Sum_probs=287.6
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHH--HHhcCCCeEEEEEcCCCCchhHHHHHhhcCC---CCceEEecCCCCCCCCC
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKR--LVINHGVHVRFLVITTNEASAAQEKLLRSLP---DGLDVVDLPPVDVSAVT 81 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~--L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 81 (436)
+.++.||+++|+|++||++|++.||++ |.+| |++|||++++. +...++..+ ..+++..++. ++
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~------~~~~~~~~~~~~~~~~~~~~~~----gl- 72 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQ------ARDLLSTVEKPRRPVDLVFFSD----GL- 72 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccc------hhhhhccccCCCCceEEEECCC----CC-
Confidence 445789999999999999999999999 5588 99999999998 222233222 1355555542 33
Q ss_pred CCCc--hHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhc
Q 047445 82 RDDM--PVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDRE 159 (436)
Q Consensus 82 ~~~~--~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (436)
+++. .....+....+...+ .+++++++. +|||||+|.+++|+..+|+++|||.+.|++.++..+..+.+++.....
T Consensus 73 p~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~-~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~ 150 (456)
T PLN02210 73 PKDDPRAPETLLKSLNKVGAK-NLSKIIEEK-RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNS 150 (456)
T ss_pred CCCcccCHHHHHHHHHHhhhH-HHHHHHhcC-CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCC
Confidence 4332 222223333334455 788888888 999999999999999999999999999999998888877655321111
Q ss_pred ccCCCCCCCCccccCCCCCCCccccchhhhccCchHHHHHHHH-hhccCCccEEEEcChhhcCchHHHHHHhccccCCCC
Q 047445 160 VQGEFFDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLH-ISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIP 238 (436)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 238 (436)
.. ...+....+.+|+++++...+++..+.......+...... ......++++++|||.++|...++.+++
T Consensus 151 ~~-~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-------- 221 (456)
T PLN02210 151 FP-DLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-------- 221 (456)
T ss_pred CC-cccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh--------
Confidence 11 1111112345888887888888876654333333334323 2345678899999999999999888765
Q ss_pred CCCeeeeccCccC-----CCCC---------CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcE
Q 047445 239 TPPIYPIGPLIKQ-----DETL---------SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRF 304 (436)
Q Consensus 239 ~p~v~~VGpl~~~-----~~~~---------~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 304 (436)
.+++++|||++.. .... ...+++|.+||+.+++++||||||||....+.+++++++.+|+.++++|
T Consensus 222 ~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~f 301 (456)
T PLN02210 222 LKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPF 301 (456)
T ss_pred cCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 2479999999742 1100 1235679999999988899999999998899999999999999999999
Q ss_pred EEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcC-CCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcC
Q 047445 305 IWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTH-GMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHG 383 (436)
Q Consensus 305 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~G 383 (436)
||+++.... ...++++.++.. +++ .+.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 302 lw~~~~~~~------------------~~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~G 362 (456)
T PLN02210 302 LWVIRPKEK------------------AQNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAG 362 (456)
T ss_pred EEEEeCCcc------------------ccchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcC
Confidence 999975311 123345666653 444 566999999999999999999999999999999999
Q ss_pred CcEeeccccccchhHHHHHHhhhcceeeec------cccccccccccccccCCC
Q 047445 384 VPMIAWPLYAEQKMNAAMLTEETRGGRKAS------NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 384 vP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~------~~~~~~~~~~~~~~~~~~ 431 (436)
||||++|++.||+.||+++++.+|+|+++. .++.+++.++++++..++
T Consensus 363 VP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 363 VPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGP 416 (456)
T ss_pred CCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCc
Confidence 999999999999999999976578887764 478899999999987654
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-58 Score=452.91 Aligned_cols=397 Identities=26% Similarity=0.448 Sum_probs=296.3
Q ss_pred ccCCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhc---CCCCceEEecCCCCC-CCCC
Q 047445 6 AKSSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRS---LPDGLDVVDLPPVDV-SAVT 81 (436)
Q Consensus 6 ~~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~ 81 (436)
.+.++.||+++|+|++||++|++.||+.|+.+ |+.|||++++.+. ......... .+..++|+.++.+.. +++
T Consensus 4 ~~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~--~~~~~~~~~~~~~~~~i~~~~lp~p~~~dgl- 79 (491)
T PLN02534 4 SKAKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNA--SRFAKTIDRARESGLPIRLVQIPFPCKEVGL- 79 (491)
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcH--HHHhhhhhhccccCCCeEEEEcCCCCccCCC-
Confidence 34556899999999999999999999999998 9999999999832 222222211 111389999986543 233
Q ss_pred CCCch---------HHHHHHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHh
Q 047445 82 RDDMP---------VITRLHAIVDESLKSSLKAVLIELC-NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFAL 151 (436)
Q Consensus 82 ~~~~~---------~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 151 (436)
|++.+ ....+...+....+ .+++++++.. +++|||+|.+++|+..+|+++|||++.|++++++......
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 80 PIGCENLDTLPSRDLLRKFYDAVDKLQQ-PLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred CCCccccccCCcHHHHHHHHHHHHHhHH-HHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 44322 22233444555556 8888888643 7899999999999999999999999999999988877654
Q ss_pred hhccchhcccCCCCCCCCccccCCCCC---CCccccchhhhccCchHHHHHHHHhhc-cCCccEEEEcChhhcCchHHHH
Q 047445 152 YLPTLDREVQGEFFDLPEPIEIPGCPP---VRPEDLLDQVRNRKIDEYNLFLLHISR-LPLAAGIFLNPWENLELVPLRA 227 (436)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 227 (436)
+........ .......++.+|++++ +...+++..+... ..+..+...+.. ...++++++|||.+||+.+++.
T Consensus 159 ~~~~~~~~~--~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 159 NIRLHNAHL--SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred HHHHhcccc--cCCCCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 321111111 1111223455788764 6667776544221 123344444433 3457799999999999999988
Q ss_pred HHhccccCCCCCCCeeeeccCccCCCC-------C---CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHH
Q 047445 228 IREHSFYLQIPTPPIYPIGPLIKQDET-------L---SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGL 297 (436)
Q Consensus 228 ~~~~~~~~~~~~p~v~~VGpl~~~~~~-------~---~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al 297 (436)
++.. + .++++.|||++..... . ...+++|.+||+.+++++||||||||.....++++.+++.+|
T Consensus 235 l~~~--~----~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl 308 (491)
T PLN02534 235 YEKA--I----KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGL 308 (491)
T ss_pred HHhh--c----CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 8764 1 1469999999752210 0 112457999999998899999999999999999999999999
Q ss_pred HhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHH
Q 047445 298 EQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSL 377 (436)
Q Consensus 298 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~ 377 (436)
+.++++|||+++.+... + . .....+|++|.++.+++|+++.+|+||.++|+|++|++|||||||||++
T Consensus 309 ~~~~~~flW~~r~~~~~----------~-~-~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ 376 (491)
T PLN02534 309 EASKKPFIWVIKTGEKH----------S-E-LEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTI 376 (491)
T ss_pred HhCCCCEEEEEecCccc----------c-c-hhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHH
Confidence 99999999999853210 0 0 0112468999999888899999999999999999999999999999999
Q ss_pred HHHHcCCcEeeccccccchhHHHHHHhhhcceeeec---------------cccccccccccccccC
Q 047445 378 ESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKAS---------------NRIGKESDRTGRDREG 429 (436)
Q Consensus 378 eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~---------------~~~~~~~~~~~~~~~~ 429 (436)
||+++|||||++|++.||+.||+++++.+|+|+++. -.+.+++.++|+++.+
T Consensus 377 ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 377 EGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred HHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 999999999999999999999999988789988763 1567788889988875
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-58 Score=448.70 Aligned_cols=396 Identities=29% Similarity=0.552 Sum_probs=294.7
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCC--CeEEEEEcCCCCchhHHHHHhh---cCCCCceEEecCCCCCCCCCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHG--VHVRFLVITTNEASAAQEKLLR---SLPDGLDVVDLPPVDVSAVTR 82 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~G--h~Vt~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 82 (436)
+++.||+++|+|++||++|++.||+.|+.+ | ..|||++++.+.+.. .+.... .....++|..+++...... +
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~~~~~~-~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSH-LDTYVKSIASSQPFVRFIDVPELEEKPT-L 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchh-hHHhhhhccCCCCCeEEEEeCCCCCCCc-c
Confidence 356799999999999999999999999998 8 999999999854321 122122 1111589999984321111 1
Q ss_pred CCc-hHHHHHHHHHHHhhh---HHHHHHHHhc--C-CC-cEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhc
Q 047445 83 DDM-PVITRLHAIVDESLK---SSLKAVLIEL--C-NP-RALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLP 154 (436)
Q Consensus 83 ~~~-~~~~~~~~~~~~~~~---~~l~~ll~~~--~-~p-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 154 (436)
... +....+...+....+ ..+.+++++. + +| +|||+|.+++|+..+|+++|||.+.|++++++.++.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 78 GGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred ccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 111 222233344443322 1455565543 1 33 89999999999999999999999999999999888887765
Q ss_pred cchhcccC-CCCCCCCccccCCC-CCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhcc
Q 047445 155 TLDREVQG-EFFDLPEPIEIPGC-PPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHS 232 (436)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~p~~-~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (436)
........ ........+.+||+ +++...+++.++.... .+..+.+......+++++++||+.+||...++.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~- 234 (468)
T PLN02207 158 DRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE- 234 (468)
T ss_pred hccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc-
Confidence 43221100 00011133568998 5788889887663222 1444555556678899999999999999988877541
Q ss_pred ccCCCCCCCeeeeccCccCCCCCC-----CChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 047445 233 FYLQIPTPPIYPIGPLIKQDETLS-----ASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWV 307 (436)
Q Consensus 233 ~~~~~~~p~v~~VGpl~~~~~~~~-----~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 307 (436)
+..|+++.|||++....... ..+++|.+||+++++++||||||||....+.+++++++.+|+.++++|||+
T Consensus 235 ----~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~ 310 (468)
T PLN02207 235 ----QNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWS 310 (468)
T ss_pred ----cCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 11467999999976432111 123679999999988899999999999999999999999999999999999
Q ss_pred EeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEe
Q 047445 308 VRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMI 387 (436)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l 387 (436)
++.... .....+|++|.++.++++ .+.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 311 ~r~~~~---------------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l 374 (468)
T PLN02207 311 LRTEEV---------------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIV 374 (468)
T ss_pred EeCCCc---------------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEE
Confidence 985321 112468999998887655 5559999999999999999999999999999999999999
Q ss_pred eccccccchhHHHHHHhhhcceeeec---------cccccccccccccccC
Q 047445 388 AWPLYAEQKMNAAMLTEETRGGRKAS---------NRIGKESDRTGRDREG 429 (436)
Q Consensus 388 ~~P~~~DQ~~nA~~v~~~~G~g~~~~---------~~~~~~~~~~~~~~~~ 429 (436)
++|+++||+.||+++++.+|+|+++. ..+.+++.++|++++.
T Consensus 375 ~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 375 TWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 99999999999998866678887552 2477899999998885
No 16
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=6.5e-58 Score=448.01 Aligned_cols=393 Identities=23% Similarity=0.381 Sum_probs=293.6
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHH---Hhh----cCC-CCceEEecCCCCCCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEK---LLR----SLP-DGLDVVDLPPVDVSA 79 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~---~~~----~~~-~~~~~~~~~~~~~~~ 79 (436)
+.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+.. ..+. ... ..+ ..+.|..++. +
T Consensus 5 ~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~--~~~~a~~~~~~~~~~~~~~~i~~~~~pd----g 77 (480)
T PLN02555 5 SSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGK--KMRQANKIQDGVLKPVGDGFIRFEFFED----G 77 (480)
T ss_pred CCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhh--hhhccccccccccccCCCCeEEEeeCCC----C
Confidence 356899999999999999999999999998 99999999997222 1111 100 001 0244544442 2
Q ss_pred CCCCCch---HHHHHHHHHH-HhhhHHHHHHHHhc--C-C-CcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHh
Q 047445 80 VTRDDMP---VITRLHAIVD-ESLKSSLKAVLIEL--C-N-PRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFAL 151 (436)
Q Consensus 80 ~~~~~~~---~~~~~~~~~~-~~~~~~l~~ll~~~--~-~-pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 151 (436)
+ |++.+ ....+...+. ...+ .++++|+++ . + ++|||+|.++.|+..+|+++|||++.|++++++.++.+.
T Consensus 78 l-p~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~ 155 (480)
T PLN02555 78 W-AEDDPRRQDLDLYLPQLELVGKR-EIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYY 155 (480)
T ss_pred C-CCCcccccCHHHHHHHHHHhhhH-HHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHH
Confidence 2 33211 1222333333 3444 788888764 1 4 499999999999999999999999999999999988877
Q ss_pred hhccchhcccCCCCCCCCccccCCCCCCCccccchhhhc--cCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHH
Q 047445 152 YLPTLDREVQGEFFDLPEPIEIPGCPPVRPEDLLDQVRN--RKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIR 229 (436)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 229 (436)
+++........ .......+.+||+++++..+++.++.. .....+..+.+......+++++++|||.+||...++.+.
T Consensus 156 ~~~~~~~~~~~-~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 234 (480)
T PLN02555 156 HYYHGLVPFPT-ETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMS 234 (480)
T ss_pred HHhhcCCCccc-ccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHh
Confidence 76422101111 000112356899988888998876642 222335556666677788999999999999999988876
Q ss_pred hccccCCCCCCCeeeeccCccCCC---C---C--CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 047445 230 EHSFYLQIPTPPIYPIGPLIKQDE---T---L--SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSK 301 (436)
Q Consensus 230 ~~~~~~~~~~p~v~~VGpl~~~~~---~---~--~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~ 301 (436)
.. . +++.|||++.... . . ...+++|.+||+.++.++||||||||+...+.+++++++.+|+.++
T Consensus 235 ~~-------~-~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~ 306 (480)
T PLN02555 235 KL-------C-PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSG 306 (480)
T ss_pred hC-------C-CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 53 3 4999999975321 1 1 1235679999999988899999999999999999999999999999
Q ss_pred CcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHH
Q 047445 302 QRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESIC 381 (436)
Q Consensus 302 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~ 381 (436)
++|||+++..... .+.....+|+++.++.++ |..+.+|+||.+||+|.+|++|||||||||++||++
T Consensus 307 ~~flW~~~~~~~~------------~~~~~~~lp~~~~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~ 373 (480)
T PLN02555 307 VSFLWVMRPPHKD------------SGVEPHVLPEEFLEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALS 373 (480)
T ss_pred CeEEEEEecCccc------------ccchhhcCChhhhhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHH
Confidence 9999999743110 001114688899888765 456669999999999999999999999999999999
Q ss_pred cCCcEeeccccccchhHHHHHHhhhcceeeec-------cccccccccccccccCCC
Q 047445 382 HGVPMIAWPLYAEQKMNAAMLTEETRGGRKAS-------NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 382 ~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~-------~~~~~~~~~~~~~~~~~~ 431 (436)
+|||||++|++.||+.||+++++.+|+|++++ .++.+++.++++++..++
T Consensus 374 ~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 374 SGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGE 430 (480)
T ss_pred cCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCc
Confidence 99999999999999999999987779998883 367888999998887543
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-57 Score=449.46 Aligned_cols=386 Identities=28% Similarity=0.426 Sum_probs=291.3
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcC--CCCceEEecCCCCCCCCCCC
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSL--PDGLDVVDLPPVDVSAVTRD 83 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 83 (436)
...+.||+++|+|++||++|++.||++|++|+ ||+|||++++. +.+.++.. ..+++|+.+++....+. ..
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~------~~~~i~~~~~~~gi~fv~lp~~~p~~~-~~ 79 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEE------WLGLIGSDPKPDNIRFATIPNVIPSEL-VR 79 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCc------hHhHhhccCCCCCEEEEECCCCCCCcc-cc
Confidence 34578999999999999999999999999764 89999999998 43333332 12499999885211121 11
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcc--
Q 047445 84 DMPVITRLHAIVDESLKSSLKAVLIELC-NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREV-- 160 (436)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~-- 160 (436)
..+....+..+.....+ .++++++++. ++||||+|.+++|+..+|+++|||++.+++++++.++...+.+......
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 80 AADFPGFLEAVMTKMEA-PFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred ccCHHHHHHHHHHHhHH-HHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 22222333333445556 7888888763 6899999999999999999999999999999998888776665332211
Q ss_pred cCCCCC-CCCcc-ccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCC
Q 047445 161 QGEFFD-LPEPI-EIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIP 238 (436)
Q Consensus 161 ~~~~~~-~~~~~-~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 238 (436)
+..... ....+ .+|++.++...+++..+.......++.+........+++++++|||++||+..++.++..
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~------- 231 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK------- 231 (459)
T ss_pred CCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh-------
Confidence 111000 11111 378887788888887655443334556666666677788999999999999988888764
Q ss_pred C-CCeeeeccCccCCCC--------CCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEe
Q 047445 239 T-PPIYPIGPLIKQDET--------LSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVR 309 (436)
Q Consensus 239 ~-p~v~~VGpl~~~~~~--------~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 309 (436)
. ++++.|||+...... ....+.++.+||+.++.+++|||||||+...+.+++++++++|+.++++|||+++
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~ 311 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVAR 311 (459)
T ss_pred cCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 3 369999999753211 0112347999999998899999999999888999999999999999999999875
Q ss_pred CCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeec
Q 047445 310 MPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAW 389 (436)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~ 389 (436)
... .++.++.+ .|+++.+|+||.+||+|++|++|||||||||++||+++|||||++
T Consensus 312 ~~~-----------------------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~ 367 (459)
T PLN02448 312 GEA-----------------------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTF 367 (459)
T ss_pred Cch-----------------------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEec
Confidence 421 13433332 367777999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhhcceeeec-------cccccccccccccccCCC
Q 047445 390 PLYAEQKMNAAMLTEETRGGRKAS-------NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 390 P~~~DQ~~nA~~v~~~~G~g~~~~-------~~~~~~~~~~~~~~~~~~ 431 (436)
|++.||+.||+++++.+|+|+.+. ..+.+++.++++++++++
T Consensus 368 P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 368 PLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred cccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 999999999999977556665553 368899999999998754
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.5e-57 Score=450.80 Aligned_cols=395 Identities=28% Similarity=0.456 Sum_probs=280.5
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhc----CC-CCceEEecCCCCCC-CC
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRS----LP-DGLDVVDLPPVDVS-AV 80 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~-~~ 80 (436)
+.+++|||++|+|++||++|++.||+.|+.| ||+|||++++.+. ...+..... .+ ..+.+..++.+..+ ++
T Consensus 2 ~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~--~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~gl 78 (482)
T PLN03007 2 NHEKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNA--KIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGL 78 (482)
T ss_pred CCCCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCch--hhhhhhhhhhcccCCCCcceEEEeeCCCCcCCC
Confidence 3456899999999999999999999999999 9999999999822 111211111 01 01233333332221 22
Q ss_pred CCCCch---------------HHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHH
Q 047445 81 TRDDMP---------------VITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIH 145 (436)
Q Consensus 81 ~~~~~~---------------~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 145 (436)
|++.+ ....+........+ .++++++.. +|||||+|.+++|+..+|+++|||++.|++++++
T Consensus 79 -P~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 79 -PEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKD-QLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred -CCCcccccccccccccchHHHHHHHHHHHHHHHH-HHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 33211 11122233334445 677777777 9999999999999999999999999999999887
Q ss_pred HHHHHhhhccchhcccCCCCCCCCccccCCCCC---CCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCc
Q 047445 146 FFAFALYLPTLDREVQGEFFDLPEPIEIPGCPP---VRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLEL 222 (436)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (436)
............... ........+.+|++++ +...+++.. .........+........+.+++++|++.+||.
T Consensus 156 ~~~~~~~~~~~~~~~--~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~ 231 (482)
T PLN03007 156 SLCASYCIRVHKPQK--KVASSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELES 231 (482)
T ss_pred HHHHHHHHHhccccc--ccCCCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHH
Confidence 766554322111000 0001111233566642 233333321 111112223333444567888999999999999
Q ss_pred hHHHHHHhccccCCCCC-CCeeeeccCccCCCC-------C---CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHH
Q 047445 223 VPLRAIREHSFYLQIPT-PPIYPIGPLIKQDET-------L---SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVI 291 (436)
Q Consensus 223 ~~~~~~~~~~~~~~~~~-p~v~~VGpl~~~~~~-------~---~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~ 291 (436)
.....+.+. . .++++|||+...... . ...+++|.+||+.+++++||||||||+...+.+++.
T Consensus 232 ~~~~~~~~~-------~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~ 304 (482)
T PLN03007 232 AYADFYKSF-------VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLF 304 (482)
T ss_pred HHHHHHHhc-------cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHH
Confidence 888877664 2 369999997643210 1 113577999999998899999999999888999999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeecc
Q 047445 292 EMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHC 371 (436)
Q Consensus 292 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HG 371 (436)
+++.+|+.++++|||+++..... . +....+|++|.++...+|+++.+|+||.+||+|++|++|||||
T Consensus 305 ~~~~~l~~~~~~flw~~~~~~~~------------~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~ 371 (482)
T PLN03007 305 EIAAGLEGSGQNFIWVVRKNENQ------------G-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHC 371 (482)
T ss_pred HHHHHHHHCCCCEEEEEecCCcc------------c-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecC
Confidence 99999999999999999864210 0 1124689999999999999999999999999999999999999
Q ss_pred CcccHHHHHHcCCcEeeccccccchhHHHHHHh--hhcceee--------eccccccccccccccccCCC
Q 047445 372 GWNSSLESICHGVPMIAWPLYAEQKMNAAMLTE--ETRGGRK--------ASNRIGKESDRTGRDREGSE 431 (436)
Q Consensus 372 G~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~--~~G~g~~--------~~~~~~~~~~~~~~~~~~~~ 431 (436)
||||++||+++|||||++|+++||+.||+++++ +.|+++. ...++.+++.++++++..++
T Consensus 372 G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 372 GWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999865 3454442 23468889999999887664
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.7e-57 Score=442.15 Aligned_cols=387 Identities=24% Similarity=0.400 Sum_probs=286.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcC--CCCceEEecCCCCCCCCCCCCc-
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSL--PDGLDVVDLPPVDVSAVTRDDM- 85 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 85 (436)
++.||+++|+|++||++|++.||+.|+.++|+.|||++++.+.. +...... ..+++|+.+++ ++ +++.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~----~~~~~~~~~~~~i~~~~i~d----gl-p~g~~ 72 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH----RSMIPNHNNVENLSFLTFSD----GF-DDGVI 72 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh----hhhhccCCCCCCEEEEEcCC----CC-CCccc
Confidence 56799999999999999999999999963399999999986211 2222211 12488888863 23 3321
Q ss_pred ----hHHHHHHHHHHHhhhHHHHHHHHhc--C--CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccch
Q 047445 86 ----PVITRLHAIVDESLKSSLKAVLIEL--C--NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLD 157 (436)
Q Consensus 86 ----~~~~~~~~~~~~~~~~~l~~ll~~~--~--~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 157 (436)
+....+........+ .++++++++ . +++|||+|.+.+|+..+|+++|||++.|++++++.++.+.+++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~-~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~ 151 (455)
T PLN02152 73 SNTDDVQNRLVNFERNGDK-ALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN 151 (455)
T ss_pred cccccHHHHHHHHHHhccH-HHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC
Confidence 222334444444555 788888765 1 3599999999999999999999999999999999988877654211
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccchhhhcc--CchHHHHHHHHhhccC--CccEEEEcChhhcCchHHHHHHhccc
Q 047445 158 REVQGEFFDLPEPIEIPGCPPVRPEDLLDQVRNR--KIDEYNLFLLHISRLP--LAAGIFLNPWENLELVPLRAIREHSF 233 (436)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (436)
...+.+||++++...+++.++... ....+..+.+...... .++++++|||++||+..++.++.
T Consensus 152 ----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--- 218 (455)
T PLN02152 152 ----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN--- 218 (455)
T ss_pred ----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---
Confidence 123458888888888888766422 2222344444444332 24699999999999999888754
Q ss_pred cCCCCCCCeeeeccCccCCC---C---C----CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCc
Q 047445 234 YLQIPTPPIYPIGPLIKQDE---T---L----SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQR 303 (436)
Q Consensus 234 ~~~~~~p~v~~VGpl~~~~~---~---~----~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~ 303 (436)
.+++.|||++.... . . .+.+.+|.+||+.++.++||||||||+..++.+++++++.+|+.++++
T Consensus 219 ------~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 292 (455)
T PLN02152 219 ------IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRP 292 (455)
T ss_pred ------CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 26999999975321 0 0 123457999999998889999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcC
Q 047445 304 FIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHG 383 (436)
Q Consensus 304 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~G 383 (436)
|||+++.+...+ ....+. . .....+|++|.++.++++ .+.+|+||.+||+|++|++|||||||||++||+++|
T Consensus 293 flWv~r~~~~~~----~~~~~~-~-~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~G 365 (455)
T PLN02152 293 FLWVITDKLNRE----AKIEGE-E-ETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLG 365 (455)
T ss_pred eEEEEecCcccc----cccccc-c-ccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcC
Confidence 999998632100 000000 0 001235789988886655 555999999999999999999999999999999999
Q ss_pred CcEeeccccccchhHHHHHHhhhcceeeec-----cccccccccccccccCCC
Q 047445 384 VPMIAWPLYAEQKMNAAMLTEETRGGRKAS-----NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 384 vP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~-----~~~~~~~~~~~~~~~~~~ 431 (436)
||||++|++.||+.||+++++.+|+|+.+. ..+.+++.++++++++++
T Consensus 366 vP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 366 VPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred CCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh
Confidence 999999999999999999977444444442 357889999999987643
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.9e-57 Score=449.50 Aligned_cols=402 Identities=32% Similarity=0.542 Sum_probs=289.7
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCC--CeEEEEEcCCCCchhH-----HHHHhhcCCCCceEEecCCCCCCCCCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHG--VHVRFLVITTNEASAA-----QEKLLRSLPDGLDVVDLPPVDVSAVTR 82 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~G--h~Vt~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
|+|||++|+|++||++|++.||+.|+.+ | ..|||++++.+..... ...........++|+.+++... +
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----P 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----C
Confidence 6799999999999999999999999998 8 8899999987433110 1111111112489999886442 1
Q ss_pred CCchHHHHHHHHHHHhhh---HHHHHHHHhc---C-CC-cEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhc
Q 047445 83 DDMPVITRLHAIVDESLK---SSLKAVLIEL---C-NP-RALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLP 154 (436)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~---~~l~~ll~~~---~-~p-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 154 (436)
+.. . ..+...+.+..+ ..+++++.+. . +| +|||+|.+++|+..+|+++|||++.|++++++.++.+.+.+
T Consensus 77 ~~~-~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 77 TTE-D-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred ccc-c-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 111 1 122223333333 1344444331 1 23 89999999999999999999999999999999999888776
Q ss_pred cchhcccC---CCCCCCCccccCCCC-CCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHh
Q 047445 155 TLDREVQG---EFFDLPEPIEIPGCP-PVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIRE 230 (436)
Q Consensus 155 ~~~~~~~~---~~~~~~~~~~~p~~~-~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (436)
........ +.......+.+||+. +++..+++..+..+ ..+..+.+......+++++++|++.+||......+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 54322110 111111335688874 78888887655432 3345556666777889999999999999999888876
Q ss_pred ccccCCCCCCCeeeeccCcc-CCCC---CCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 047445 231 HSFYLQIPTPPIYPIGPLIK-QDET---LSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIW 306 (436)
Q Consensus 231 ~~~~~~~~~p~v~~VGpl~~-~~~~---~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 306 (436)
... ..|+++.|||++. .... ..+.+++|.+||+++++++||||||||+...+.+++++++.+|++++++|||
T Consensus 233 ~~~----~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 233 SSG----DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred ccc----CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 211 1467999999943 2221 1235578999999998889999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcE
Q 047445 307 VVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPM 386 (436)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~ 386 (436)
+++..... ......++ ..+....+|++|.++.+++. ++.+|+||.+||+|++|++|||||||||++||+++||||
T Consensus 309 ~~~~~~~~---~~~~~~~~-~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~ 383 (481)
T PLN02554 309 SLRRASPN---IMKEPPGE-FTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPM 383 (481)
T ss_pred EEcCCccc---cccccccc-ccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCE
Confidence 99763210 00000000 00111247999998887655 555999999999999999999999999999999999999
Q ss_pred eeccccccchhHHHHHHhhhcceeeec-------------cccccccccccccccC
Q 047445 387 IAWPLYAEQKMNAAMLTEETRGGRKAS-------------NRIGKESDRTGRDREG 429 (436)
Q Consensus 387 l~~P~~~DQ~~nA~~v~~~~G~g~~~~-------------~~~~~~~~~~~~~~~~ 429 (436)
|++|+++||+.||+++++.+|+|+.+. .++.+++.+++++++.
T Consensus 384 l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 384 AAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred EecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhc
Confidence 999999999999965434467776653 4788889999988875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-57 Score=446.80 Aligned_cols=397 Identities=32% Similarity=0.560 Sum_probs=290.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCC---CeEEEEEcCCCCchhHHHHHhhcC---CCCceEEecCCCCCCCCCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHG---VHVRFLVITTNEASAAQEKLLRSL---PDGLDVVDLPPVDVSAVTR 82 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~G---h~Vt~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 82 (436)
++.||+++|+|++||++|++.||+.|+.+ | +.||+.++..+.+.. .+...+.. ..+++|+.+|+... . +
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~~~--p-~ 76 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAPQ-ADAFLKSLIASEPRIRLVTLPEVQD--P-P 76 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcchh-hhHHHhhcccCCCCeEEEECCCCCC--C-c
Confidence 56799999999999999999999999998 8 357777765433211 11112111 12599999986431 1 1
Q ss_pred CC---c-hHHHHHHHHHHHhhhHHHHHHHHhc-----C----CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHH
Q 047445 83 DD---M-PVITRLHAIVDESLKSSLKAVLIEL-----C----NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAF 149 (436)
Q Consensus 83 ~~---~-~~~~~~~~~~~~~~~~~l~~ll~~~-----~----~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~ 149 (436)
.. . .....+........+ .+++.++++ . +++|||+|.+++|+..+|+++|||++.|++++++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~ 155 (475)
T PLN02167 77 PMELFVKASEAYILEFVKKMVP-LVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGM 155 (475)
T ss_pred cccccccchHHHHHHHHHHHHH-HHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 10 1 112334444444444 566665543 0 24999999999999999999999999999999988888
Q ss_pred HhhhccchhcccCCC--CCCCCccccCCC-CCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHH
Q 047445 150 ALYLPTLDREVQGEF--FDLPEPIEIPGC-PPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLR 226 (436)
Q Consensus 150 ~~~~~~~~~~~~~~~--~~~~~~~~~p~~-~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (436)
+.+.+........+. .....++.+||+ .+++..+++..++.+. .+..+.+......+++++++|||++||+.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 156 MKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 776653222111111 011133568898 4678888876554321 24445566666788999999999999999988
Q ss_pred HHHhccccCCCCCCCeeeeccCccCCCC---C--CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 047445 227 AIREHSFYLQIPTPPIYPIGPLIKQDET---L--SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSK 301 (436)
Q Consensus 227 ~~~~~~~~~~~~~p~v~~VGpl~~~~~~---~--~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~ 301 (436)
+++.. .+. .|++++|||++..... . ...+.+|.+||+.++.++||||||||+...+.+++++++.+|+.++
T Consensus 234 ~l~~~--~~~--~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 234 YFSRL--PEN--YPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred HHHhh--ccc--CCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 88542 010 3679999999764321 1 1233679999999988899999999998899999999999999999
Q ss_pred CcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHH
Q 047445 302 QRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESIC 381 (436)
Q Consensus 302 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~ 381 (436)
++|||+++.... . ..+....+|++|.+|.++++++ ++|+||.+||+|++|++|||||||||++||++
T Consensus 310 ~~flw~~~~~~~-----------~-~~~~~~~lp~~~~er~~~rg~v-~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~ 376 (475)
T PLN02167 310 CRFLWSIRTNPA-----------E-YASPYEPLPEGFMDRVMGRGLV-CGWAPQVEILAHKAIGGFVSHCGWNSVLESLW 376 (475)
T ss_pred CcEEEEEecCcc-----------c-ccchhhhCChHHHHHhccCeee-eccCCHHHHhcCcccCeEEeeCCcccHHHHHH
Confidence 999999975321 0 0011246899999999877644 49999999999999999999999999999999
Q ss_pred cCCcEeeccccccchhHHHHHHhhhcceeeec---------cccccccccccccccCC
Q 047445 382 HGVPMIAWPLYAEQKMNAAMLTEETRGGRKAS---------NRIGKESDRTGRDREGS 430 (436)
Q Consensus 382 ~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~---------~~~~~~~~~~~~~~~~~ 430 (436)
+|||||++|+++||+.||+++.+.+|+|+++. ..+.+++.+++++++.+
T Consensus 377 ~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 377 FGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred cCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC
Confidence 99999999999999999987545477777653 35788899999888754
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.6e-45 Score=359.96 Aligned_cols=372 Identities=16% Similarity=0.165 Sum_probs=236.9
Q ss_pred CEEEEE-cCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCC--C------CCC
Q 047445 11 PHVAVL-ASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDV--S------AVT 81 (436)
Q Consensus 11 ~~il~~-~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~ 81 (436)
.||+.+ |.++.+|+.-+..|+++|++| ||+||++++.... ..... .. .+++.+.++.... . ...
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~----~~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRV----YYASH-LC-GNITEIDASLSVEYFKKLVKSSAVF 93 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEeccccc----ccccC-CC-CCEEEEEcCCChHHHHHHHhhhhHH
Confidence 458766 889999999999999999999 9999999886400 00000 11 1355555431100 0 000
Q ss_pred CC-----Cc-hHHH----HHHHHHHHhh-hHHHHHHHH--hcCCCcEEEEcCCcchHHHHHHHc-CCCeEEEecchHHHH
Q 047445 82 RD-----DM-PVIT----RLHAIVDESL-KSSLKAVLI--ELCNPRALVIDLFCTQAFEICSQL-SIPTYSFVTTSIHFF 147 (436)
Q Consensus 82 ~~-----~~-~~~~----~~~~~~~~~~-~~~l~~ll~--~~~~pD~vI~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~ 147 (436)
.. .. .... .+...+.... .+.+.++|+ +. ++|+||+|.+..|+..+|+.+ ++|.|.+++......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~-kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 94 RKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN-KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC-ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 00 00 0000 1111222222 225667776 44 899999999988998899999 999888877543211
Q ss_pred HHHhhhccchhcccCCCCCCCCccccCCCCCCCccccchhhhccCchHHHHHH---------HHhhc-cCCccEEEEcCh
Q 047445 148 AFALYLPTLDREVQGEFFDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFL---------LHISR-LPLAAGIFLNPW 217 (436)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~---------~~~~~-~~~~~~~~~~~~ 217 (436)
.. ....+ . ...+.++|......... ..+++|..+.+.... ..... ..+..+.-.+++
T Consensus 173 ~~--------~~~gg-~--p~~~syvP~~~~~~~~~--Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 173 NF--------ETMGA-V--SRHPVYYPNLWRSKFGN--LNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred HH--------Hhhcc-C--CCCCeeeCCcccCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 10 00000 0 00001123222111111 112344433321110 00000 111111112234
Q ss_pred hhcCchHHHHHHh-cc--ccCCCCCCCeeeeccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCC---CCCHHHHH
Q 047445 218 ENLELVPLRAIRE-HS--FYLQIPTPPIYPIGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGG---TLTAEQVI 291 (436)
Q Consensus 218 ~~l~~~~~~~~~~-~~--~~~~~~~p~v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~---~~~~~~~~ 291 (436)
.++.......+.+ ++ .+.||..|++.+|||++..+...+++++++.+|++.+ ++++|||||||+. ..+.+.++
T Consensus 240 ~~l~~~~~l~lvns~~~~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~ 318 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQ 318 (507)
T ss_pred HHHHhCCcEEEEecCccccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHH
Confidence 4444433222222 22 2235445559999999875433356889999999987 4589999999985 35788999
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeecc
Q 047445 292 EMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHC 371 (436)
Q Consensus 292 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HG 371 (436)
.+++|+++.+.+|||+++.... ...+|+ |+++.+|+||.++|+|+.+++|||||
T Consensus 319 ~~l~a~~~l~~~viw~~~~~~~-----------------~~~~p~---------Nv~i~~w~Pq~~lL~hp~v~~fItHG 372 (507)
T PHA03392 319 MLLRTFKKLPYNVLWKYDGEVE-----------------AINLPA---------NVLTQKWFPQRAVLKHKNVKAFVTQG 372 (507)
T ss_pred HHHHHHHhCCCeEEEEECCCcC-----------------cccCCC---------ceEEecCCCHHHHhcCCCCCEEEecC
Confidence 9999999999999999975321 024566 99999999999999998888999999
Q ss_pred CcccHHHHHHcCCcEeeccccccchhHHHHHHh-hhcceeeeccccccccccccccccCC
Q 047445 372 GWNSSLESICHGVPMIAWPLYAEQKMNAAMLTE-ETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 372 G~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
|+||++||+++|||||++|+++||+.||+|+++ |+|+.++..+++.+++.+|+++++++
T Consensus 373 G~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~ 432 (507)
T PHA03392 373 GVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN 432 (507)
T ss_pred CcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999987 66666666779999999999888765
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.5e-46 Score=377.27 Aligned_cols=367 Identities=21% Similarity=0.254 Sum_probs=208.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCch-HHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMP-VITR 90 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 90 (436)
|||++|. ++||+.++..|+++|++| ||+||++++.. ....-......+++..++............. ....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER-GHNVTVLTPSP------SSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHH------HHT------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc-CCceEEEEeec------ccccccccccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 5778874 789999999999999999 99999998865 2222211122455555543221111011111 0000
Q ss_pred ----------HHHHHH----------Hhh-----hHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHH
Q 047445 91 ----------LHAIVD----------ESL-----KSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIH 145 (436)
Q Consensus 91 ----------~~~~~~----------~~~-----~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 145 (436)
+..... ... ...+.+.++.. ++|++|+|.+..|+..+|+.+++|.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~-~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~- 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE-KFDLVISDAFDPCGLALAHYLGIPVIIISSSTP- 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH-HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS-
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-ccccceEeeccchhHHHHHHhcCCeEEEecccc-
Confidence 111100 000 00122233333 899999999999999999999999875433221
Q ss_pred HHHHHhhhccchhcccCCCCCCCCccccCCCCCCCccccchhh--hccCchHHHHHH-----HHhhccCCccEEEEcC--
Q 047445 146 FFAFALYLPTLDREVQGEFFDLPEPIEIPGCPPVRPEDLLDQV--RNRKIDEYNLFL-----LHISRLPLAAGIFLNP-- 216 (436)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~--~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 216 (436)
........ ......|++.|.....+++.+ ++|..+.+..+. ............-...
T Consensus 152 -------~~~~~~~~-------~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 152 -------MYDLSSFS-------GGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp -------CSCCTCCT-------SCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred -------cchhhhhc-------cCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc
Confidence 00000000 011123445444444444433 455444332221 1111111111111111
Q ss_pred --hhhcCchHHHH-HHhccccC--CCCCCCeeeeccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCC-CCHHHH
Q 047445 217 --WENLELVPLRA-IREHSFYL--QIPTPPIYPIGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGT-LTAEQV 290 (436)
Q Consensus 217 --~~~l~~~~~~~-~~~~~~~~--~~~~p~v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~-~~~~~~ 290 (436)
..++....... +++++.++ ||..|++.+||+++..+. +++++++.+|++...++++|||||||+.. .+.+..
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~--~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~ 295 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPA--KPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKL 295 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHH
T ss_pred cccHHHHHHHHHHhhhccccCcCCcchhhcccccCccccccc--cccccccchhhhccCCCCEEEEecCcccchhHHHHH
Confidence 11111112222 23333333 445566999999977654 46889999999985478999999999865 444458
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeec
Q 047445 291 IEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSH 370 (436)
Q Consensus 291 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~H 370 (436)
+.+++++++++++|||++++... ..+|+ |+.+.+|+||.++|.|++|++||||
T Consensus 296 ~~~~~~~~~~~~~~iW~~~~~~~------------------~~l~~---------n~~~~~W~PQ~~lL~hp~v~~fitH 348 (500)
T PF00201_consen 296 KEIAEAFENLPQRFIWKYEGEPP------------------ENLPK---------NVLIVKWLPQNDLLAHPRVKLFITH 348 (500)
T ss_dssp HHHHHHHHCSTTEEEEEETCSHG------------------CHHHT---------TEEEESS--HHHHHTSTTEEEEEES
T ss_pred HHHHHHHhhCCCccccccccccc------------------ccccc---------eEEEeccccchhhhhcccceeeeec
Confidence 88999999999999999976321 45566 9999999999999999999999999
Q ss_pred cCcccHHHHHHcCCcEeeccccccchhHHHHHHh-hhcceeeeccccccccccccccccCCC
Q 047445 371 CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTE-ETRGGRKASNRIGKESDRTGRDREGSE 431 (436)
Q Consensus 371 GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~~ 431 (436)
||+||++||+++|||||++|+++||+.||+++++ |.|+.++...++.+++.+++++++.++
T Consensus 349 gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 349 GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp --HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999988 777777878899999999998887654
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=8.7e-42 Score=335.17 Aligned_cols=354 Identities=16% Similarity=0.107 Sum_probs=222.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCC-C------
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTR-D------ 83 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 83 (436)
|||+|+++|++||++|++.||++|++| ||+|+|++++. ++..++..| ++|+.++......... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~------~~~~v~~~G--~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPE------FADLVEAAG--LEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHh------HHHHHHHcC--CceeeCCCCHHHHHhhhhhccccc
Confidence 699999999999999999999999999 99999999998 888888877 8888887532110000 0
Q ss_pred --CchHHHH----HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccch
Q 047445 84 --DMPVITR----LHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLD 157 (436)
Q Consensus 84 --~~~~~~~----~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 157 (436)
....... +......... .+.+.++.+ +||+||+|.+.+++..+|+++|||++.+++++.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~------- 142 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLD-DLVAAARDW-GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF------- 142 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH-HHHHHhccc-CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-------
Confidence 0011111 1122222222 333334445 999999999899998999999999999987653211000
Q ss_pred hcccCCCCCCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcC-hhhcCchHHHHHHhccccCC
Q 047445 158 REVQGEFFDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNP-WENLELVPLRAIREHSFYLQ 236 (436)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~ 236 (436)
.|.. . ............ ...............+..++-... +..........+.+.+....
T Consensus 143 ---------------~~~~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (401)
T cd03784 143 ---------------PPPL-G-RANLRLYALLEA-ELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPP 204 (401)
T ss_pred ---------------CCcc-c-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCC
Confidence 0000 0 000000000000 000000001111111111100000 00000000000111111111
Q ss_pred CCCCC-eeeec-cCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCC-HHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 047445 237 IPTPP-IYPIG-PLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLT-AEQVIEMAWGLEQSKQRFIWVVRMPSD 313 (436)
Q Consensus 237 ~~~p~-v~~VG-pl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~ 313 (436)
+.+++ ..++| ++...+. +...+.++..|++. ++++||||+||+.... ...+..++++++..+.++||.++....
T Consensus 205 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~ 281 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVPY-NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL 281 (401)
T ss_pred CCccccCcEeCCCCCCCCC-CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc
Confidence 22444 66775 3333222 23456778888875 4679999999987644 456778899999999999999876432
Q ss_pred CCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccc
Q 047445 314 ASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYA 393 (436)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~ 393 (436)
. ...+|+ |+.+.+|+||.++|+++| +||||||+||++||+++|||+|++|+..
T Consensus 282 ---------------~-~~~~~~---------~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 282 ---------------G-AEDLPD---------NVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred ---------------c-ccCCCC---------ceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCC
Confidence 0 123344 999999999999999999 5999999999999999999999999999
Q ss_pred cchhHHHHHHh-hhcceeeeccccccccccccccccCC
Q 047445 394 EQKMNAAMLTE-ETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 394 DQ~~nA~~v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
||+.||+++++ |+|+.++...++++++.+++.+.+++
T Consensus 335 dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 335 DQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred CcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 99999999987 55555666667889999888777654
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.1e-39 Score=316.87 Aligned_cols=350 Identities=17% Similarity=0.179 Sum_probs=217.6
Q ss_pred EcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCC-CCCCCC---chHHH--
Q 047445 16 LASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVS-AVTRDD---MPVIT-- 89 (436)
Q Consensus 16 ~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~-- 89 (436)
+.+|++||++|++.||++|++| ||+|+|++++. +++.+++.| +.|..++..... +. .+. .....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~------~~~~v~~~G--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEE------FAERVEAAG--AEFVLYGSALPPPDN-PPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHH------HHHHHHHcC--CEEEecCCcCccccc-cccccCcchHHHH
Confidence 3579999999999999999999 99999999998 888888877 888887753211 11 111 11111
Q ss_pred -HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCC
Q 047445 90 -RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLP 168 (436)
Q Consensus 90 -~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (436)
.+........+ .+.++++.+ +||+||+|.+++++..+|+.+|||+|.+++..... ..++.... +
T Consensus 71 ~~~~~~~~~~~~-~l~~~~~~~-~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~~----~----- 135 (392)
T TIGR01426 71 EKLLDEAEDVLP-QLEEAYKGD-RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMVS----P----- 135 (392)
T ss_pred HHHHHHHHHHHH-HHHHHhcCC-CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccccc----c-----
Confidence 11222222333 344455556 99999999998899999999999999886543210 00000000 0
Q ss_pred CccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCC-eeeecc
Q 047445 169 EPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPP-IYPIGP 247 (436)
Q Consensus 169 ~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-v~~VGp 247 (436)
. .+.+.. ...............++.+++....-......+...... ..+....+.+.+....+|+ ++++||
T Consensus 136 --~-~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~~~~~~~~~~Gp 207 (392)
T TIGR01426 136 --A-GEGSAE--EGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRD---LNLVYTPKAFQPAGETFDDSFTFVGP 207 (392)
T ss_pred --c-chhhhh--hhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcC---cEEEeCChHhCCCccccCCCeEEECC
Confidence 0 000000 000000000000011122221111000000000000000 0000001111111112454 999999
Q ss_pred CccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCC
Q 047445 248 LIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDV 327 (436)
Q Consensus 248 l~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 327 (436)
+...+.. ...|+...+++++||||+||+.......++.+++++++.+.+++|..+.... .
T Consensus 208 ~~~~~~~-------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-------------~ 267 (392)
T TIGR01426 208 CIGDRKE-------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-------------P 267 (392)
T ss_pred CCCCccc-------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-------------h
Confidence 8754321 2237766667899999999987667778889999999999999998765321 0
Q ss_pred CCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHh-hh
Q 047445 328 NDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTE-ET 406 (436)
Q Consensus 328 ~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~-~~ 406 (436)
.....+|+ |+.+.+|+||.++|++++ ++|||||+||++||+++|||+|++|...||+.||.++++ |+
T Consensus 268 -~~~~~~~~---------~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~ 335 (392)
T TIGR01426 268 -ADLGELPP---------NVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGL 335 (392)
T ss_pred -hHhccCCC---------CeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCC
Confidence 01122333 899999999999999999 699999999999999999999999999999999999977 55
Q ss_pred cceeeeccccccccccccccccCC
Q 047445 407 RGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 407 G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
|+.+....++++++.+++.+++.+
T Consensus 336 g~~l~~~~~~~~~l~~ai~~~l~~ 359 (392)
T TIGR01426 336 GRHLPPEEVTAEKLREAVLAVLSD 359 (392)
T ss_pred EEEeccccCCHHHHHHHHHHHhcC
Confidence 555555567888999988877654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-39 Score=311.63 Aligned_cols=363 Identities=19% Similarity=0.209 Sum_probs=223.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCc-hHH
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDM-PVI 88 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 88 (436)
+|||+|+..|+.||++|+++||++|.++ ||+|+|+|++. +++.+++.| +.|..++..........+. ...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~------~~~~ve~ag--~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGK------FKEFVEAAG--LAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHH------HHHHHHHhC--cceeeccccCChhhhhhhhhhcc
Confidence 4799999999999999999999999999 99999999999 999999988 7777766542211101111 011
Q ss_pred HH---HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCC
Q 047445 89 TR---LHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFF 165 (436)
Q Consensus 89 ~~---~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (436)
.. .......... .+.+++.+. .+|+++.|...+.+ .+++..++|++.............. .... ..
T Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~e~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~ 140 (406)
T COG1819 72 KSFRRLLQQFKKLIR-ELLELLREL-EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG------LPLP--PV 140 (406)
T ss_pred chhHHHhhhhhhhhH-HHHHHHHhc-chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc------cCcc--cc
Confidence 11 1122222222 333456666 99999999876666 8999999998875554332111110 0000 00
Q ss_pred CCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCC-eee
Q 047445 166 DLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPP-IYP 244 (436)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-v~~ 244 (436)
...+....+.. +++.....+....+.........+.......... +.+.+..-......+....+..+ ...|. ..+
T Consensus 141 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~ 217 (406)
T COG1819 141 GIAGKLPIPLY-PLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPN-IRRLFASGPLLEIAYTDVLFPPG-DRLPFIGPY 217 (406)
T ss_pred ccccccccccc-ccChhhccccccchhhhhhhhhhhhccccccccc-hHHHhcCCCCccccccccccCCC-CCCCCCcCc
Confidence 00000001110 0000000000001110000000000000000000 00000000000011111110000 01233 566
Q ss_pred eccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCC
Q 047445 245 IGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVG 324 (436)
Q Consensus 245 VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 324 (436)
+||+..... .+...|.. .++++||+|+||+... .+.++.+++++..++.++|...+. .+
T Consensus 218 ~~~~~~~~~------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~----------- 276 (406)
T COG1819 218 IGPLLGEAA------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-AR----------- 276 (406)
T ss_pred ccccccccc------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cc-----------
Confidence 666655433 33333422 3578999999999766 888999999999999999999866 32
Q ss_pred CCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHh
Q 047445 325 SDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTE 404 (436)
Q Consensus 325 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~ 404 (436)
.....+|+ |+++.+|+||.++|+++| +||||||+|||+|||++|||+|++|...||+.||.|+++
T Consensus 277 ----~~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~ 341 (406)
T COG1819 277 ----DTLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE 341 (406)
T ss_pred ----cccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH
Confidence 23466777 999999999999999999 699999999999999999999999999999999999988
Q ss_pred -hhcceeeeccccccccccccccccCCC
Q 047445 405 -ETRGGRKASNRIGKESDRTGRDREGSE 431 (436)
Q Consensus 405 -~~G~g~~~~~~~~~~~~~~~~~~~~~~ 431 (436)
|+|+.++...++++.+++++++++++.
T Consensus 342 ~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 342 LGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred cCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 777777777999999999999987753
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=8e-39 Score=322.73 Aligned_cols=369 Identities=27% Similarity=0.413 Sum_probs=218.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhc-CC-CCceEE---ecCCCCCCCCCCCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRS-LP-DGLDVV---DLPPVDVSAVTRDD 84 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~ 84 (436)
+.+++++++|++||++|++.+|++|+++ ||+||++++.. ....... .. ...... ........+..+..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSF------NALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEG 77 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeec------hhcccCCcccceeeeeeecChHHhhhhhhhhccc
Confidence 5689999999999999999999999999 99999999987 2221111 00 000100 01110110111332
Q ss_pred chH-----HHHHHHHHHHhhhHHHHHHHHhc---C--CCcEEEEcCCcchHHHHHHHcC-CCeEEEecchHHHHHHHhhh
Q 047445 85 MPV-----ITRLHAIVDESLKSSLKAVLIEL---C--NPRALVIDLFCTQAFEICSQLS-IPTYSFVTTSIHFFAFALYL 153 (436)
Q Consensus 85 ~~~-----~~~~~~~~~~~~~~~l~~ll~~~---~--~pD~vI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~ 153 (436)
... ..........+.. .+++.+..+ . ++|++|+|.+..+...+|...+ ++..++.+..........+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~ 156 (496)
T KOG1192|consen 78 WEDDDLDISESLLELNKTCED-LLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPS 156 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcC
Confidence 221 1111122222222 333322221 1 4999999998767766776664 88888888777655544332
Q ss_pred ccchhcccCCCCCCCCccccCCCCCCCc---cccchhhhccCchHHH-------------HHHH-Hhhcc----CCccEE
Q 047445 154 PTLDREVQGEFFDLPEPIEIPGCPPVRP---EDLLDQVRNRKIDEYN-------------LFLL-HISRL----PLAAGI 212 (436)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~l~~~~~~r~~~~~~-------------~~~~-~~~~~----~~~~~~ 212 (436)
+.. . .|....... ..+.....+.....+. .... ..... ....++
T Consensus 157 ~~~--~-------------~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 221 (496)
T KOG1192|consen 157 PLS--Y-------------VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGI 221 (496)
T ss_pred ccc--c-------------cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHh
Confidence 221 1 111111000 0111111000000000 0000 00011 112233
Q ss_pred EEcC-hhhcCchHHHHHHhccccCCCCCCCeeeeccCccCCCCCCCChhHHhhhhcCCCC--CeEEEEecCCCC---CCC
Q 047445 213 FLNP-WENLELVPLRAIREHSFYLQIPTPPIYPIGPLIKQDETLSASDEECLAWLGKQPS--DSVIFVAPGSGG---TLT 286 (436)
Q Consensus 213 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~--~~vV~vs~GS~~---~~~ 286 (436)
+.++ +..++......+. .++..+++++|||+......... ..+.+|++..+. .++|||||||+. .++
T Consensus 222 ~~~~~~~~ln~~~~~~~~-----~~~~~~~v~~IG~l~~~~~~~~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp 294 (496)
T KOG1192|consen 222 IVNASFIFLNSNPLLDFE-----PRPLLPKVIPIGPLHVKDSKQKS--PLPLEWLDILDESRHSVVYISFGSMVNSADLP 294 (496)
T ss_pred hhcCeEEEEccCcccCCC-----CCCCCCCceEECcEEecCccccc--cccHHHHHHHhhccCCeEEEECCcccccccCC
Confidence 4444 5555544322111 12235679999999887443221 134555555444 389999999997 799
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhh-cCccCc
Q 047445 287 AEQVIEMAWGLEQS-KQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEI-LRHSST 364 (436)
Q Consensus 287 ~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~l-L~~~~v 364 (436)
.++..+++.+++++ ++.|||+++.... ..+++++.++ ..+||...+|+||.++ |.|.++
T Consensus 295 ~~~~~~l~~~l~~~~~~~FiW~~~~~~~------------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v 355 (496)
T KOG1192|consen 295 EEQKKELAKALESLQGVTFLWKYRPDDS------------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAV 355 (496)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecCCcc------------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcC
Confidence 99999999999999 8889999986432 1133333333 3448888899999998 699999
Q ss_pred eeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeee-ccccccccccccccc
Q 047445 365 GGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKA-SNRIGKESDRTGRDR 427 (436)
Q Consensus 365 ~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~-~~~~~~~~~~~~~~~ 427 (436)
++|||||||||++|++++|||||++|+++||+.||+++++..++++.. ..++..++.+++.+.
T Consensus 356 ~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~i 419 (496)
T KOG1192|consen 356 GGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEI 419 (496)
T ss_pred cEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999997733444444 446554445444443
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=8.1e-25 Score=208.09 Aligned_cols=301 Identities=19% Similarity=0.214 Sum_probs=188.0
Q ss_pred CEEEEEcCC-CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 11 PHVAVLASP-GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 11 ~~il~~~~p-~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|||+|...+ |.||+.+++.||++| | ||+|+|++... ..++.+. .+....++....... ....+...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGP------APEFLKP---RFPVREIPGLGPIQE-NGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCC------cHHHhcc---ccCEEEccCceEecc-CCccchHH
Confidence 789999987 999999999999999 7 99999999987 3344432 134455544322221 11222222
Q ss_pred HHHH------HHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCC
Q 047445 90 RLHA------IVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGE 163 (436)
Q Consensus 90 ~~~~------~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (436)
.+.. ...+... .+.+++++. +||+||+|.... +..+|+..|+|++.+.......
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~l~~~-~pDlVIsD~~~~-~~~aa~~~giP~i~i~~~~~~~----------------- 127 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIR-REIRWLREF-RPDLVISDFYPL-AALAARRAGIPVIVISNQYWFL----------------- 127 (318)
T ss_pred HHHHHHHhhHHHHHHHH-HHHHHHHhc-CCCEEEEcChHH-HHHHHHhcCCCEEEEEehHHcc-----------------
Confidence 2211 2233444 455677777 999999996444 5689999999999887765420
Q ss_pred CCCCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhc--cCCccEEEEcChhhcCchHHHHHHhccccCCCCCCC
Q 047445 164 FFDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISR--LPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPP 241 (436)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~ 241 (436)
.+.. .+. .. ........+.... ...+...+.-++. .... ....
T Consensus 128 ---------~~~~------~~~---~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~--------------~~~~ 172 (318)
T PF13528_consen 128 ---------HPNF------WLP---WD--QDFGRLIERYIDRYHFPPADRRLALSFY-PPLP--------------PFFR 172 (318)
T ss_pred ---------cccC------Ccc---hh--hhHHHHHHHhhhhccCCcccceecCCcc-cccc--------------cccc
Confidence 0000 000 00 0001111111111 1222222222222 1000 0123
Q ss_pred eeeeccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCccccc
Q 047445 242 IYPIGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSK-QRFIWVVRMPSDASASATF 320 (436)
Q Consensus 242 v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~ 320 (436)
+.++||+........ . . .+.+.|+|+||.... . .++++++..+ ..+++. +....
T Consensus 173 ~~~~~p~~~~~~~~~---------~-~-~~~~~iLv~~gg~~~---~---~~~~~l~~~~~~~~~v~-g~~~~------- 227 (318)
T PF13528_consen 173 VPFVGPIIRPEIREL---------P-P-EDEPKILVYFGGGGP---G---DLIEALKALPDYQFIVF-GPNAA------- 227 (318)
T ss_pred ccccCchhccccccc---------C-C-CCCCEEEEEeCCCcH---H---HHHHHHHhCCCCeEEEE-cCCcc-------
Confidence 667888776543211 0 1 145679999998642 2 5667777766 566655 33211
Q ss_pred ccCCCCCCCccCcCchhHHHhcCCCcEEecccC-C-hhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc--cccch
Q 047445 321 FNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWA-P-QVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL--YAEQK 396 (436)
Q Consensus 321 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~-p-q~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~--~~DQ~ 396 (436)
... ..|+.+.+|. + ..++|+.|| ++|+|||+||++|++++|+|+|++|. ..||.
T Consensus 228 -----------~~~---------~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~ 285 (318)
T PF13528_consen 228 -----------DPR---------PGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQE 285 (318)
T ss_pred -----------ccc---------CCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHH
Confidence 111 3389998887 4 468999999 69999999999999999999999999 77999
Q ss_pred hHHHHHHh-hhcceeeecccccccccccccc
Q 047445 397 MNAAMLTE-ETRGGRKASNRIGKESDRTGRD 426 (436)
Q Consensus 397 ~nA~~v~~-~~G~g~~~~~~~~~~~~~~~~~ 426 (436)
.||+++++ |+|+.+...+++++.+.+++.+
T Consensus 286 ~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 286 YNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 99999977 6666666778999999988765
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.91 E-value=2e-22 Score=192.78 Aligned_cols=312 Identities=16% Similarity=0.155 Sum_probs=190.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
+|+|.+.++-||++|.+++|++|+++ ||+|+|++..... ..+.+.+.+ +.+..++....... .........
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~----e~~l~~~~g--~~~~~~~~~~l~~~--~~~~~~~~~ 73 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGI----EKTIIEKEN--IPYYSISSGKLRRY--FDLKNIKDP 73 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcc----ccccCcccC--CcEEEEeccCcCCC--chHHHHHHH
Confidence 58888888999999999999999998 9999999987611 223333444 77777764322111 111222222
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc--hHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCCC
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCT--QAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLPE 169 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (436)
....... - ....+++++ +||+||..--.. .+..+|..+++|++......
T Consensus 74 ~~~~~~~-~-~~~~i~~~~-kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------------------- 124 (352)
T PRK12446 74 FLVMKGV-M-DAYVRIRKL-KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------------------- 124 (352)
T ss_pred HHHHHHH-H-HHHHHHHhc-CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------------------
Confidence 2323222 2 244578888 999999865222 35689999999988754322
Q ss_pred ccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeeccCc
Q 047445 170 PIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIGPLI 249 (436)
Q Consensus 170 ~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGpl~ 249 (436)
.||+ .+++... .++.+ ..+|.+.. ..+. ..++.++|+.+
T Consensus 125 ---~~g~-------------------~nr~~~~-----~a~~v-~~~f~~~~----~~~~---------~~k~~~tG~Pv 163 (352)
T PRK12446 125 ---TPGL-------------------ANKIALR-----FASKI-FVTFEEAA----KHLP---------KEKVIYTGSPV 163 (352)
T ss_pred ---CccH-------------------HHHHHHH-----hhCEE-EEEccchh----hhCC---------CCCeEEECCcC
Confidence 1110 0111100 01111 12222110 0110 12578899766
Q ss_pred cCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHH-HHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCC
Q 047445 250 KQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAE-QVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVN 328 (436)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 328 (436)
...... ...+...+-+.-.+++++|+|..||......+ .+..++..+.. +.+++|..+....
T Consensus 164 r~~~~~-~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~--------------- 226 (352)
T PRK12446 164 REEVLK-GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNL--------------- 226 (352)
T ss_pred Cccccc-ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchH---------------
Confidence 554321 11223323334344678999999998654432 23344444432 4778888765311
Q ss_pred CccCcCchhHHHhcCCCcEEecccC-Ch-hhhcCccCceeeeeccCcccHHHHHHcCCcEeecccc-----ccchhHHHH
Q 047445 329 DPQAYLPEGFLQRTHGMGMVVPSWA-PQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLY-----AEQKMNAAM 401 (436)
Q Consensus 329 ~~~~~lp~~~~~~~~~~nv~v~~~~-pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~-----~DQ~~nA~~ 401 (436)
+...... .++.+..|+ ++ .++|.++| ++|||||.+|++|++++|+|+|++|+. .||..||..
T Consensus 227 -------~~~~~~~--~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~ 295 (352)
T PRK12446 227 -------DDSLQNK--EGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAES 295 (352)
T ss_pred -------HHHHhhc--CCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHH
Confidence 0111111 244555887 53 58999999 699999999999999999999999984 489999999
Q ss_pred HHh-hhcceeeeccccccccccccccccCC
Q 047445 402 LTE-ETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 402 v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
+++ |+|..+.-..++++.+.+++.+...+
T Consensus 296 l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 296 FERQGYASVLYEEDVTVNSLIKHVEELSHN 325 (352)
T ss_pred HHHCCCEEEcchhcCCHHHHHHHHHHHHcC
Confidence 977 55555555678888888888766543
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=2.9e-21 Score=183.39 Aligned_cols=302 Identities=15% Similarity=0.159 Sum_probs=166.1
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCce-EEecCCCCCCCCCCCCchHHH
Q 047445 12 HVAVLASP-GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLD-VVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 12 ~il~~~~p-~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (436)
||++...+ |.||+.|.++||++|++ ||+|+++++.. ...+....+ +. +..++....... ....+...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~------~~~~~~~~~--~~~~~~~p~~~~~~~-~~~~~~~~ 69 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGR------SKNYISKYG--FKVFETFPGIKLKGE-DGKVNIVK 69 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCC------HHHhhhhhc--CcceeccCCceEeec-CCcCcHHH
Confidence 47776655 67999999999999985 99999998777 555555443 33 333332222111 11112222
Q ss_pred HHH---HHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCC
Q 047445 90 RLH---AIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFD 166 (436)
Q Consensus 90 ~~~---~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (436)
.+. ....+... ...++++++ +||+||+| +.+.+..+|+.+|||++.+..+...
T Consensus 70 ~l~~~~~~~~~~~~-~~~~~l~~~-~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~--------------------- 125 (321)
T TIGR00661 70 TLRNKEYSPKKAIR-REINIIREY-NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT--------------------- 125 (321)
T ss_pred HHHhhccccHHHHH-HHHHHHHhc-CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---------------------
Confidence 222 11112333 456788888 99999999 5666678999999999987653210
Q ss_pred CCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCee--e
Q 047445 167 LPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIY--P 244 (436)
Q Consensus 167 ~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~--~ 244 (436)
.+|+.. +...+ ..+.....+. ..........+..... + .|++. .
T Consensus 126 -----~~~~~~----~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~~------------~---~p~~~~~~ 171 (321)
T TIGR00661 126 -----RYPLKT----DLIVY--------PTMAALRIFN--ERCERFIVPDYPFPYT------------I---CPKIIKNM 171 (321)
T ss_pred -----cCCccc----chhHH--------HHHHHHHHhc--cccceEeeecCCCCCC------------C---CccccccC
Confidence 011110 00000 0011111111 1111111111110000 0 11110 0
Q ss_pred eccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCC
Q 047445 245 IGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVG 324 (436)
Q Consensus 245 VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 324 (436)
-+|.. .....+|... +.+.|+|.+|+.. .+.+++++.+.+. +.|.+.....
T Consensus 172 ~~~~~---------~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~----------- 222 (321)
T TIGR00661 172 EGPLI---------RYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV----------- 222 (321)
T ss_pred CCccc---------chhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC-----------
Confidence 01111 1122223222 3456888888753 2455677777653 2233222211
Q ss_pred CCCCCccCcCchhHHHhcCCCcEEecccCC--hhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccc--cchhHHH
Q 047445 325 SDVNDPQAYLPEGFLQRTHGMGMVVPSWAP--QVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYA--EQKMNAA 400 (436)
Q Consensus 325 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~p--q~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~--DQ~~nA~ 400 (436)
....+++ |+.+.+|.| ..++|+.|| ++|||||++|++||+++|+|+|++|... ||..||.
T Consensus 223 -----~~~~~~~---------~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~ 286 (321)
T TIGR00661 223 -----AKNSYNE---------NVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAV 286 (321)
T ss_pred -----CccccCC---------CEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHH
Confidence 1122333 888889997 357889999 6999999999999999999999999855 8999999
Q ss_pred HHHhhhcceeeeccccccccccccccccC
Q 047445 401 MLTEETRGGRKASNRIGKESDRTGRDREG 429 (436)
Q Consensus 401 ~v~~~~G~g~~~~~~~~~~~~~~~~~~~~ 429 (436)
.+++ .|+|+.+..... ++.+++.+..+
T Consensus 287 ~l~~-~g~~~~l~~~~~-~~~~~~~~~~~ 313 (321)
T TIGR00661 287 KLED-LGCGIALEYKEL-RLLEAILDIRN 313 (321)
T ss_pred HHHH-CCCEEEcChhhH-HHHHHHHhccc
Confidence 9987 444444433222 44444444333
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.9e-18 Score=163.43 Aligned_cols=313 Identities=17% Similarity=0.186 Sum_probs=190.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-eEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGV-HVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
++|++...++-||+.|.++|+++|.++ |+ +|.+..+.... .+......+ +.++.++....... .......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~----e~~l~~~~~--~~~~~I~~~~~~~~--~~~~~~~ 71 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGL----EAFLVKQYG--IEFELIPSGGLRRK--GSLKLLK 71 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEecccccc----eeeeccccC--ceEEEEeccccccc--CcHHHHH
Confidence 468888899999999999999999999 99 57777665511 222223333 66666664333221 1111222
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC--CcchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCC
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDL--FCTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDL 167 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~--~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (436)
..+.... ... ..+++++++ +||+||.-. -+..+..+|..+|||.+..-...
T Consensus 72 ~~~~~~~-~~~-~a~~il~~~-kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~------------------------ 124 (357)
T COG0707 72 APFKLLK-GVL-QARKILKKL-KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA------------------------ 124 (357)
T ss_pred HHHHHHH-HHH-HHHHHHHHc-CCCEEEecCCccccHHHHHHHhCCCCEEEEecCC------------------------
Confidence 2222222 333 467799999 999999843 33345579999999988754332
Q ss_pred CCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeecc
Q 047445 168 PEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIGP 247 (436)
Q Consensus 168 ~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGp 247 (436)
.||... . ... +.++.+ ..+|...+.. .. ..+++.+|-
T Consensus 125 -----~~G~an--------k-------~~~---------~~a~~V-~~~f~~~~~~----~~---------~~~~~~tG~ 161 (357)
T COG0707 125 -----VPGLAN--------K-------ILS---------KFAKKV-ASAFPKLEAG----VK---------PENVVVTGI 161 (357)
T ss_pred -----CcchhH--------H-------HhH---------Hhhcee-eecccccccc----CC---------CCceEEecC
Confidence 222110 0 000 001111 1222211100 00 113777774
Q ss_pred CccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCC
Q 047445 248 LIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTA-EQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSD 326 (436)
Q Consensus 248 l~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 326 (436)
-+...-.. .+..-.+..... ++++|+|.-||.+...- +.+..+...+.+ ...+++..+...
T Consensus 162 Pvr~~~~~--~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~-------------- 223 (357)
T COG0707 162 PVRPEFEE--LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND-------------- 223 (357)
T ss_pred cccHHhhc--cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch--------------
Confidence 33222111 112222222222 57899999999854332 223333333333 356666654431
Q ss_pred CCCccCcCchhHHHhcCCCc-EEecccCCh-hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc-c---ccchhHHH
Q 047445 327 VNDPQAYLPEGFLQRTHGMG-MVVPSWAPQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL-Y---AEQKMNAA 400 (436)
Q Consensus 327 ~~~~~~~lp~~~~~~~~~~n-v~v~~~~pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~-~---~DQ~~nA~ 400 (436)
-+.........| +.+..|..+ .++|+.+| ++||.+|.+|+.|++++|+|+|.+|. . .||..||.
T Consensus 224 --------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~ 293 (357)
T COG0707 224 --------LEELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAK 293 (357)
T ss_pred --------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHH
Confidence 123333443334 778889887 58999999 69999999999999999999999996 3 38999999
Q ss_pred HHHh-hhcceeeeccccccccccccccccCC
Q 047445 401 MLTE-ETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 401 ~v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
.+++ |.|+-++-..+|++++...+.+.+++
T Consensus 294 ~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 294 FLEKAGAALVIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred HHHhCCCEEEeccccCCHHHHHHHHHHHhcC
Confidence 9988 77777888889999999999888775
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.74 E-value=3e-16 Score=151.66 Aligned_cols=311 Identities=16% Similarity=0.144 Sum_probs=178.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
|||+|+..+..||...++.||++|.++ ||+|++++.+... .....+..+ +.+..++....... ........
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~----~~~~~~~~g--~~~~~~~~~~~~~~--~~~~~l~~ 72 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGM----EARLVPKAG--IEFHFIPSGGLRRK--GSLANLKA 72 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCch----hhhccccCC--CcEEEEeccCcCCC--ChHHHHHH
Confidence 689999998889999999999999999 9999999986510 122223333 56665553221111 00111111
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCC--cchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCC
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLF--CTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLP 168 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (436)
.... ..... .+++++++. +||+|++... ...+..++...++|+|......
T Consensus 73 ~~~~-~~~~~-~~~~~ik~~-~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------- 124 (357)
T PRK00726 73 PFKL-LKGVL-QARKILKRF-KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------- 124 (357)
T ss_pred HHHH-HHHHH-HHHHHHHhc-CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------------------
Confidence 1111 22333 466788888 9999999862 3334467788899987532110
Q ss_pred CccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeeccC
Q 047445 169 EPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIGPL 248 (436)
Q Consensus 169 ~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGpl 248 (436)
.++ ..+.+... .++.++.. ..+. +.+. +..++.++|..
T Consensus 125 ----~~~-------------------~~~r~~~~-----~~d~ii~~-~~~~-------~~~~------~~~~i~vi~n~ 162 (357)
T PRK00726 125 ----VPG-------------------LANKLLAR-----FAKKVATA-FPGA-------FPEF------FKPKAVVTGNP 162 (357)
T ss_pred ----Ccc-------------------HHHHHHHH-----HhchheEC-chhh-------hhcc------CCCCEEEECCC
Confidence 000 00110000 11122111 1100 0000 12358888865
Q ss_pred ccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHH-HHHHHHhCCC--cEEEEEeCCCCCCcccccccCCC
Q 047445 249 IKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIE-MAWGLEQSKQ--RFIWVVRMPSDASASATFFNVGS 325 (436)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~ 325 (436)
+....... . . ...-+...++.++|++..|+. ....... +.+++++... .++|.++....
T Consensus 163 v~~~~~~~-~-~-~~~~~~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~------------ 224 (357)
T PRK00726 163 VREEILAL-A-A-PPARLAGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGDL------------ 224 (357)
T ss_pred CChHhhcc-c-c-hhhhccCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH------------
Confidence 54322110 0 0 111122223455677655553 2222323 3366665443 34455544321
Q ss_pred CCCCccCcCchhHHHhc-CCCcEEecccCC-hhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc----cccchhHH
Q 047445 326 DVNDPQAYLPEGFLQRT-HGMGMVVPSWAP-QVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL----YAEQKMNA 399 (436)
Q Consensus 326 ~~~~~~~~lp~~~~~~~-~~~nv~v~~~~p-q~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~----~~DQ~~nA 399 (436)
+.+.+.. .+-++.+.+|+. ..++|+.+| ++|+|+|.++++||+++|+|+|++|. .+||..|+
T Consensus 225 ----------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~ 292 (357)
T PRK00726 225 ----------EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANA 292 (357)
T ss_pred ----------HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHH
Confidence 2222222 222377889985 479999999 49999999999999999999999997 46899999
Q ss_pred HHHHh-hhcceeeeccccccccccccccccCC
Q 047445 400 AMLTE-ETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 400 ~~v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
..+.+ +.|+-+..+.++++++.+++.+...+
T Consensus 293 ~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 293 RALVDAGAALLIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred HHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC
Confidence 99977 55555665666789999999877654
No 33
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=1.8e-15 Score=140.15 Aligned_cols=255 Identities=18% Similarity=0.204 Sum_probs=149.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 047445 20 GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESL 99 (436)
Q Consensus 20 ~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (436)
|.||+..+++||++|+++ ||+|+|++...... ..+.+++.+ +....++... + .....
T Consensus 13 G~GHv~Rcl~LA~~l~~~-g~~v~f~~~~~~~~---~~~~i~~~g--~~v~~~~~~~-------~----------~~~d~ 69 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQ-GAEVAFACKPLPGD---LIDLLLSAG--FPVYELPDES-------S----------RYDDA 69 (279)
T ss_pred cccHHHHHHHHHHHHHHC-CCEEEEEeCCCCHH---HHHHHHHcC--CeEEEecCCC-------c----------hhhhH
Confidence 789999999999999998 99999999876111 234455555 7777665321 1 01223
Q ss_pred hHHHHHHHHhcCCCcEEEEcCCcchHH--HHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCCCccccCCCC
Q 047445 100 KSSLKAVLIELCNPRALVIDLFCTQAF--EICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLPEPIEIPGCP 177 (436)
Q Consensus 100 ~~~l~~ll~~~~~pD~vI~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 177 (436)
. .+.+++++. +||+||.|.+..... ...+..+.+.+.+.-... .
T Consensus 70 ~-~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~-----------------~--------------- 115 (279)
T TIGR03590 70 L-ELINLLEEE-KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD-----------------R--------------- 115 (279)
T ss_pred H-HHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC-----------------C---------------
Confidence 3 466778888 999999998655332 233344555554321100 0
Q ss_pred CCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCC--Ceeeecc---CccCC
Q 047445 178 PVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTP--PIYPIGP---LIKQD 252 (436)
Q Consensus 178 ~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p--~v~~VGp---l~~~~ 252 (436)
+. .++ .+++.-...+ ...+ .+. .| ..++.|| ++.+.
T Consensus 116 ~~----------------------------~~D-~vin~~~~~~--~~~y-~~~-------~~~~~~~l~G~~Y~~lr~e 156 (279)
T TIGR03590 116 PH----------------------------DCD-LLLDQNLGAD--ASDY-QGL-------VPANCRLLLGPSYALLREE 156 (279)
T ss_pred Cc----------------------------CCC-EEEeCCCCcC--HhHh-ccc-------CcCCCeEEecchHHhhhHH
Confidence 00 011 1111111100 0000 000 11 2566676 32211
Q ss_pred CCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCcccccccCCCCCCCc
Q 047445 253 ETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQS--KQRFIWVVRMPSDASASATFFNVGSDVNDP 330 (436)
Q Consensus 253 ~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (436)
-. ...+.-...+..+.|+|+||.... ......+++++.+. +.++.++++....
T Consensus 157 F~------~~~~~~~~~~~~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~----------------- 211 (279)
T TIGR03590 157 FY------QLATANKRRKPLRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP----------------- 211 (279)
T ss_pred HH------HhhHhhhcccccCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc-----------------
Confidence 00 000000011123579999996532 22345566777654 4467777665421
Q ss_pred cCcCchhHHHhc-CCCcEEecccCChh-hhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHH
Q 047445 331 QAYLPEGFLQRT-HGMGMVVPSWAPQV-EILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAM 401 (436)
Q Consensus 331 ~~~lp~~~~~~~-~~~nv~v~~~~pq~-~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~ 401 (436)
..+.+.+.. ...|+.+..|++++ ++|+.+| ++|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 212 ---~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 212 ---NLDELKKFAKEYPNIILFIDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred ---CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 112232221 12488888999985 9999999 5999999 9999999999999999999999999874
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.71 E-value=9.6e-16 Score=147.74 Aligned_cols=313 Identities=18% Similarity=0.173 Sum_probs=176.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
||++...+..||....+.||+.|.++ ||+|++++..... ........ ++++..++....... .........
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~ 71 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGL----EARLVPKA--GIPLHTIPVGGLRRK--GSLKKLKAP 71 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcc----hhhccccc--CCceEEEEecCcCCC--ChHHHHHHH
Confidence 58888888899999999999999999 9999999876510 11112222 256665554222111 111112222
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCC--cchHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCCC
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLF--CTQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLPE 169 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (436)
... ..... .+++++++. +||+|++... ...+..+|...|+|++......
T Consensus 72 ~~~-~~~~~-~~~~~i~~~-~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-------------------------- 122 (350)
T cd03785 72 FKL-LKGVL-QARKILKKF-KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-------------------------- 122 (350)
T ss_pred HHH-HHHHH-HHHHHHHhc-CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC--------------------------
Confidence 221 22333 466778888 9999998752 3344568888999987531110
Q ss_pred ccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeeccCc
Q 047445 170 PIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIGPLI 249 (436)
Q Consensus 170 ~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGpl~ 249 (436)
.++ ..+.+. ...++.++..+-...+. + . ..++.++|...
T Consensus 123 ---~~~-------------------~~~~~~-----~~~~~~vi~~s~~~~~~-----~------~---~~~~~~i~n~v 161 (350)
T cd03785 123 ---VPG-------------------LANRLL-----ARFADRVALSFPETAKY-----F------P---KDKAVVTGNPV 161 (350)
T ss_pred ---Ccc-------------------HHHHHH-----HHhhCEEEEcchhhhhc-----C------C---CCcEEEECCCC
Confidence 000 001110 01133333332111110 0 0 12477777654
Q ss_pred cCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCC
Q 047445 250 KQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTA-EQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVN 328 (436)
Q Consensus 250 ~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 328 (436)
...... .. .. ...+...+++.+|++..|+...... +.+..++..+.+.+..+++.++....
T Consensus 162 ~~~~~~-~~-~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~--------------- 223 (350)
T cd03785 162 REEILA-LD-RE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL--------------- 223 (350)
T ss_pred chHHhh-hh-hh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH---------------
Confidence 332110 01 11 2233333345567776666532111 11223333343333445556544311
Q ss_pred CccCcCchhHHHhcC--CCcEEecccC-ChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc----cccchhHHHH
Q 047445 329 DPQAYLPEGFLQRTH--GMGMVVPSWA-PQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL----YAEQKMNAAM 401 (436)
Q Consensus 329 ~~~~~lp~~~~~~~~--~~nv~v~~~~-pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~----~~DQ~~nA~~ 401 (436)
+.+.+... ..|+.+.+|+ +..++|+.+|+ +|+++|.+++.||+++|+|+|+.|. ..+|..|+..
T Consensus 224 -------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 224 -------EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred -------HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 12221111 3589998998 45789999995 9999999999999999999999986 4578999999
Q ss_pred HHh-hhcceeeeccccccccccccccccCC
Q 047445 402 LTE-ETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 402 v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
+.+ +.|..+.....+++++.+++++...+
T Consensus 295 l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 295 LVKAGAAVLIPQEELTPERLAAALLELLSD 324 (350)
T ss_pred HHhCCCEEEEecCCCCHHHHHHHHHHHhcC
Confidence 977 44444544445788898888776543
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.61 E-value=9.5e-14 Score=133.73 Aligned_cols=309 Identities=17% Similarity=0.164 Sum_probs=162.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
|||+|++.+..||+.....||++|.++ ||+|++++.+. .. .....+..+ +.+..++....... ........
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~-g~eV~vv~~~~-~~---~~~~~~~~g--~~~~~i~~~~~~~~--~~~~~l~~ 71 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR-GVEVLWLGTKR-GL---EKRLVPKAG--IEFYFIPVGGLRRK--GSFRLIKT 71 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC-CCEEEEEeCCC-cc---hhcccccCC--CceEEEeccCcCCC--ChHHHHHH
Confidence 489999999999999888999999999 99999998744 10 112223333 66555553221111 00111111
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCc--chHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCC
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFC--TQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLP 168 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (436)
.... ..... .+++++++. +||+|++.... ..+..++..+++|.+.... ..
T Consensus 72 ~~~~-~~~~~-~l~~~i~~~-~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~------------------------ 123 (348)
T TIGR01133 72 PLKL-LKAVF-QARRILKKF-KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NA------------------------ 123 (348)
T ss_pred HHHH-HHHHH-HHHHHHHhc-CCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CC------------------------
Confidence 1222 22333 566788888 99999987532 2344578888999874211 00
Q ss_pred CccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeeccC
Q 047445 169 EPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIGPL 248 (436)
Q Consensus 169 ~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGpl 248 (436)
.++ ....+.. +.++.++..+ ..... . . ...++|.-
T Consensus 124 ----~~~-------------------~~~~~~~-----~~~d~ii~~~-~~~~~----~-----------~-~~~~i~n~ 158 (348)
T TIGR01133 124 ----VPG-------------------LTNKLLS-----RFAKKVLISF-PGAKD----H-----------F-EAVLVGNP 158 (348)
T ss_pred ----Ccc-------------------HHHHHHH-----HHhCeeEECc-hhHhh----c-----------C-CceEEcCC
Confidence 000 0000000 1122222211 11100 0 0 12334432
Q ss_pred ccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHh---CCCcEEEEEeCCCCCCcccccccCCC
Q 047445 249 IKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQ---SKQRFIWVVRMPSDASASATFFNVGS 325 (436)
Q Consensus 249 ~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~~ 325 (436)
+...... .+.. .+++.-.+++++|.+..|+.. .......+.++++. .+.++++..+...
T Consensus 159 v~~~~~~--~~~~-~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~------------- 220 (348)
T TIGR01133 159 VRQEIRS--LPVP-RERFGLREGKPTILVLGGSQG--AKILNELVPKALAKLAEKGIQIVHQTGKND------------- 220 (348)
T ss_pred cCHHHhc--ccch-hhhcCCCCCCeEEEEECCchh--HHHHHHHHHHHHHHHhhcCcEEEEECCcch-------------
Confidence 2111000 0000 112222223445555445543 12222223344443 3445554433221
Q ss_pred CCCCccCcCchhHHHhcCCCcE-EecccC--ChhhhcCccCceeeeeccCcccHHHHHHcCCcEeecccc---ccchhHH
Q 047445 326 DVNDPQAYLPEGFLQRTHGMGM-VVPSWA--PQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLY---AEQKMNA 399 (436)
Q Consensus 326 ~~~~~~~~lp~~~~~~~~~~nv-~v~~~~--pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~---~DQ~~nA 399 (436)
. +.+.+.....++ .++.|. +..++|+.+| ++|+++|.+++.||+++|+|+|+.|.. .+|..|+
T Consensus 221 --------~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 289 (348)
T TIGR01133 221 --------L-EKVKNVYQELGIEAIVTFIDENMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNA 289 (348)
T ss_pred --------H-HHHHHHHhhCCceEEecCcccCHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHH
Confidence 0 122221211121 122333 4578999999 599999988999999999999999873 4678898
Q ss_pred HHHHh-hhcceeeeccccccccccccccccCC
Q 047445 400 AMLTE-ETRGGRKASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 400 ~~v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~ 430 (436)
..+.+ +.|+-+.....+++++.+++.+...+
T Consensus 290 ~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 290 KFLEDLGAGLVIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred HHHHHCCCEEEEecccCCHHHHHHHHHHHHcC
Confidence 88866 55655555556788999888776654
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.56 E-value=3.8e-13 Score=121.77 Aligned_cols=324 Identities=17% Similarity=0.171 Sum_probs=188.1
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCC-----C
Q 047445 9 SRPHVAVLAS--PGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSA-----V 80 (436)
Q Consensus 9 ~~~~il~~~~--p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 80 (436)
+.+||+|.++ .+.||...++.||++|.+.- |.+|++++.... ...+. .+.+++++.+|.....+ .
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~-----~~~F~--~~~gVd~V~LPsl~k~~~G~~~~ 80 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPP-----AGGFP--GPAGVDFVKLPSLIKGDNGEYGL 80 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCc-----cCCCC--CcccCceEecCceEecCCCceee
Confidence 4569999997 58899999999999999853 899999998771 11111 22359999998643211 1
Q ss_pred CCCCchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHH-HHHHHc------CCCeEEEecchHHHHHHHhhh
Q 047445 81 TRDDMPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAF-EICSQL------SIPTYSFVTTSIHFFAFALYL 153 (436)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~-~~A~~~------giP~v~~~~~~~~~~~~~~~~ 153 (436)
...+.+ +.+. .+...+.+....+.+ +||++|+|.+-++.. .+...+ +-+++.
T Consensus 81 ~d~~~~----l~e~-~~~Rs~lil~t~~~f-kPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL--------------- 139 (400)
T COG4671 81 VDLDGD----LEET-KKLRSQLILSTAETF-KPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVL--------------- 139 (400)
T ss_pred eecCCC----HHHH-HHHHHHHHHHHHHhc-CCCEEEEeccccchhhhhhHHHHHHhhcCCccee---------------
Confidence 011111 1222 223332556677788 999999999777632 111110 100100
Q ss_pred ccchhcccCCCCCCCCccccCCCCCCCccccchhh---hccCchHHHHHHHHhhccCCccEEEEc---ChhhcCchHHHH
Q 047445 154 PTLDREVQGEFFDLPEPIEIPGCPPVRPEDLLDQV---RNRKIDEYNLFLLHISRLPLAAGIFLN---PWENLELVPLRA 227 (436)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 227 (436)
++.. ..+.+... |++. .... ..+ +..+.+++. .|.++...+...
T Consensus 140 ---------------------~lr~--i~D~p~~~~~~w~~~-~~~~-~I~-----r~yD~V~v~GdP~f~d~~~~~~~~ 189 (400)
T COG4671 140 ---------------------GLRS--IRDIPQELEADWRRA-ETVR-LIN-----RFYDLVLVYGDPDFYDPLTEFPFA 189 (400)
T ss_pred ---------------------ehHh--hhhchhhhccchhhh-HHHH-HHH-----HhheEEEEecCccccChhhcCCcc
Confidence 1000 00111111 1111 0111 111 112333332 233333221000
Q ss_pred HHhccccCCCCCCCeeeeccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHh-CCCcEEE
Q 047445 228 IREHSFYLQIPTPPIYPIGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQ-SKQRFIW 306 (436)
Q Consensus 228 ~~~~~~~~~~~~p~v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~ 306 (436)
.. ...++.|+|-+..+ -.-.+.+. ... +.+.-|+||-|. +....+.+...++|-.. .+.+-.|
T Consensus 190 -~~-------i~~k~~ytG~vq~~-~~~~~~p~-----~~~-pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~~~ 253 (400)
T COG4671 190 -PA-------IRAKMRYTGFVQRS-LPHLPLPP-----HEA-PEGFDILVSVGG-GADGAELIETALAAAQLLAGLNHKW 253 (400)
T ss_pred -Hh-------hhhheeEeEEeecc-CcCCCCCC-----cCC-CccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCcce
Confidence 00 01258999988221 11001111 111 344569999987 44567777777776554 3333244
Q ss_pred EEeCCCCCCcccccccCCCCCCCccCcCchhHHHhc-----CCCcEEecccCCh-hhhcCccCceeeeeccCcccHHHHH
Q 047445 307 VVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRT-----HGMGMVVPSWAPQ-VEILRHSSTGGFLSHCGWNSSLESI 380 (436)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~v~~~~pq-~~lL~~~~v~~~I~HGG~~s~~eal 380 (436)
.+-.+ ...|+...... +..++.+..|-.+ ..+|..++ .+|+-||+||+||-|
T Consensus 254 ~ivtG--------------------P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeIL 311 (400)
T COG4671 254 LIVTG--------------------PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEIL 311 (400)
T ss_pred EEEeC--------------------CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHH
Confidence 44322 23454333222 2358999899876 68999999 699999999999999
Q ss_pred HcCCcEeeccccc---cchhHHHHHHhhhcce--eeeccccccccccccccccC
Q 047445 381 CHGVPMIAWPLYA---EQKMNAAMLTEETRGG--RKASNRIGKESDRTGRDREG 429 (436)
Q Consensus 381 ~~GvP~l~~P~~~---DQ~~nA~~v~~~~G~g--~~~~~~~~~~~~~~~~~~~~ 429 (436)
++|+|.+++|... +|-.-|.|+++ +|+. +..+.++++.+.+++.....
T Consensus 312 s~~k~aLivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 312 SFGKPALIVPRAAPREEQLIRAQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred hCCCceEEeccCCCcHHHHHHHHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 9999999999844 99999999987 6654 77788999999998876654
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.51 E-value=6e-13 Score=129.80 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=89.0
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhc--CCCc
Q 047445 270 PSDSVIFVAPGSGGTLTAEQVIEMAWGLEQS-KQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRT--HGMG 346 (436)
Q Consensus 270 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~n 346 (436)
+++++|++..|+.... +.+..+++++.+. +.++++..+.+. .+-+.+.+.. ...|
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~--------------------~~~~~l~~~~~~~~~~ 257 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE--------------------ALKQSLEDLQETNPDA 257 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH--------------------HHHHHHHHHHhcCCCc
Confidence 3456788877776432 2355677777654 456666554321 0111222111 1247
Q ss_pred EEecccCCh-hhhcCccCceeeeeccCcccHHHHHHcCCcEeec-cccccchhHHHHHHhhhcceeeecccccccccccc
Q 047445 347 MVVPSWAPQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAW-PLYAEQKMNAAMLTEETRGGRKASNRIGKESDRTG 424 (436)
Q Consensus 347 v~v~~~~pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~-P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~~~~ 424 (436)
+.+.+|+++ .++++.+| ++|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|.++... +++++.+++
T Consensus 258 v~~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~--~~~~l~~~i 332 (380)
T PRK13609 258 LKVFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR--DDEEVFAKT 332 (380)
T ss_pred EEEEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC--CHHHHHHHH
Confidence 888899987 58999999 599999988899999999999985 677778889888855 56666543 467777777
Q ss_pred ccccCC
Q 047445 425 RDREGS 430 (436)
Q Consensus 425 ~~~~~~ 430 (436)
.+...+
T Consensus 333 ~~ll~~ 338 (380)
T PRK13609 333 EALLQD 338 (380)
T ss_pred HHHHCC
Confidence 665443
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.46 E-value=2.2e-12 Score=125.32 Aligned_cols=317 Identities=13% Similarity=0.056 Sum_probs=168.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCC--CCceEEecCCCCCCCCCCCCchHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLP--DGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
++|++.+.++.||++|. +|+++|+++ |++|+|++... . . .++.+ ..+++..++. .++ . +..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~-~~~~~~~g~gg------~-~-m~~~g~~~~~~~~~l~v---~G~-~---~~l 68 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEH-YPNARFIGVAG------P-R-MAAEGCEVLYSMEELSV---MGL-R---EVL 68 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhc-CCCcEEEEEcc------H-H-HHhCcCccccChHHhhh---ccH-H---HHH
Confidence 57999999999999999 999999998 99999999775 1 1 22222 1122222221 111 1 222
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEE-cCCcch--HHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCC
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVI-DLFCTQ--AFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFF 165 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~-D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (436)
..+... .+... ..++++++. +||+||. |.-.+. .+..|+.+|||.+.+.+-..
T Consensus 69 ~~~~~~-~~~~~-~~~~~l~~~-kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~--------------------- 124 (385)
T TIGR00215 69 GRLGRL-LKIRK-EVVQLAKQA-KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQV--------------------- 124 (385)
T ss_pred HHHHHH-HHHHH-HHHHHHHhc-CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcH---------------------
Confidence 222222 22334 566788888 9999995 642222 22488899999886532110
Q ss_pred CCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeee
Q 047445 166 DLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPI 245 (436)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~V 245 (436)
..+. ..+ .+.+....+ .++ .++ ..+... +... --+..+|
T Consensus 125 -----------waw~--------~~~-~r~l~~~~d---------~v~-~~~-~~e~~~---~~~~-------g~~~~~v 163 (385)
T TIGR00215 125 -----------WAWR--------KWR-AKKIEKATD---------FLL-AIL-PFEKAF---YQKK-------NVPCRFV 163 (385)
T ss_pred -----------hhcC--------cch-HHHHHHHHh---------Hhh-ccC-CCcHHH---HHhc-------CCCEEEE
Confidence 0000 000 011111111 111 111 112211 1111 1256678
Q ss_pred ccCccCCCCC-CCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhC-----CCcEEEEEeCCCCCCcccc
Q 047445 246 GPLIKQDETL-SASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQS-----KQRFIWVVRMPSDASASAT 319 (436)
Q Consensus 246 Gpl~~~~~~~-~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~ 319 (436)
|.-..+.... .+...+..+-+.-.+++++|.+--||....-......++++++.. +.++++.......
T Consensus 164 GnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~------ 237 (385)
T TIGR00215 164 GHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR------ 237 (385)
T ss_pred CCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh------
Confidence 8433222111 012233333333334567888888887432133344555554432 2344444322110
Q ss_pred cccCCCCCCCccCcCchhHHHhcC-CCcEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeec----cccc-
Q 047445 320 FFNVGSDVNDPQAYLPEGFLQRTH-GMGMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAW----PLYA- 393 (436)
Q Consensus 320 ~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~----P~~~- 393 (436)
...+ +.+..... ...+.+..+ ...++|+.+| ++|+-.|..|+ |++++|+|+|++ |+..
T Consensus 238 -----------~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~ 301 (385)
T TIGR00215 238 -----------RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFL 301 (385)
T ss_pred -----------HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHH
Confidence 0000 11111111 112322222 3357999999 59999999887 999999999999 8632
Q ss_pred --------cchhHHHHHHh-hhcceeeeccccccccccccccccCCC
Q 047445 394 --------EQKMNAAMLTE-ETRGGRKASNRIGKESDRTGRDREGSE 431 (436)
Q Consensus 394 --------DQ~~nA~~v~~-~~G~g~~~~~~~~~~~~~~~~~~~~~~ 431 (436)
.|..|+..+++ ++.--+.-...|++.+.+++.+...+.
T Consensus 302 ~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 302 IARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred HHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 37889998865 333334445688888888887776654
No 39
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.42 E-value=1.1e-14 Score=124.85 Aligned_cols=85 Identities=20% Similarity=0.171 Sum_probs=70.4
Q ss_pred CcEEecccCC-hhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccc----cchhHHHHHHh-hhcceeeecccccc
Q 047445 345 MGMVVPSWAP-QVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYA----EQKMNAAMLTE-ETRGGRKASNRIGK 418 (436)
Q Consensus 345 ~nv~v~~~~p-q~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~----DQ~~nA~~v~~-~~G~g~~~~~~~~~ 418 (436)
.++.+.+|++ ..++++.+| ++|||||.||++|++++|+|+|++|... +|..||..+++ |.|+.+.....+++
T Consensus 55 ~~v~~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~ 132 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPE 132 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCC
T ss_pred CcEEEEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHH
Confidence 4788889999 689999999 5999999999999999999999999988 99999999988 88888888888899
Q ss_pred ccccccccccCCC
Q 047445 419 ESDRTGRDREGSE 431 (436)
Q Consensus 419 ~~~~~~~~~~~~~ 431 (436)
+|..++.+..+++
T Consensus 133 ~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 133 ELAEAIEELLSDP 145 (167)
T ss_dssp CHHHHHHCHCCCH
T ss_pred HHHHHHHHHHcCc
Confidence 9999887776654
No 40
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.41 E-value=3.5e-13 Score=111.74 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=81.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHH
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLH 92 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (436)
|+|++.|+.||++|+++||++|++| ||+|++++++. +++.+++.| ++|..++.. ... +........+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~------~~~~v~~~G--l~~~~~~~~--~~~-~~~~~~~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPD------FRERVEAAG--LEFVPIPGD--SRL-PRSLEPLANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGG------GHHHHHHTT---EEEESSSC--GGG-GHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeeccc------ceecccccC--ceEEEecCC--cCc-Ccccchhhhhh
Confidence 7899999999999999999999999 99999999999 888888887 999998865 111 11111111111
Q ss_pred HH------HHHhhhHHHHHHHHhc----C---CCcEEEEcCCcchHHHHHHHcCCCeEEEecchH
Q 047445 93 AI------VDESLKSSLKAVLIEL----C---NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 93 ~~------~~~~~~~~l~~ll~~~----~---~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~ 144 (436)
.. +..... .+++...+. . .+|+++.+.....+..+|+++|||++.....+.
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 69 RLARLIRGLEEAMR-ILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hHHHHhhhhhHHHH-HhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11 111111 222222111 1 578888898888888999999999998876653
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.40 E-value=8.4e-12 Score=121.74 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=66.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhc-CCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRS-LPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|+|+|+..+..||++|.. ++++|+++ ++++.++.... . .+.++ ....+.+..++.. +. .+...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~-~~~~~~~~~~~------~-~~~~~~~~~~~~~~~l~~~---g~----~~~~~ 65 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKAR-APNLEFVGVGG------P-RMQAAGCESLFDMEELAVM---GL----VEVLP 65 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhc-CCCcEEEEEcc------H-HHHhCCCccccCHHHhhhc---cH----HHHHH
Confidence 689999999999999999 99999998 88888888654 1 11111 1111222222210 10 12222
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEE-cCCcchH--HHHHHHcCCCeEEE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVI-DLFCTQA--FEICSQLSIPTYSF 139 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~-D~~~~~~--~~~A~~~giP~v~~ 139 (436)
.+.... .... .++++++++ +||+|+. +.-..+. +..|.+.|||++.+
T Consensus 66 ~~~~~~-~~~~-~~~~~l~~~-kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 66 RLPRLL-KIRR-RLKRRLLAE-PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred HHHHHH-HHHH-HHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 222222 2344 577889999 9999886 4222232 34577889998754
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.28 E-value=6.4e-11 Score=115.70 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=87.9
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhc-CCCc
Q 047445 270 PSDSVIFVAPGSGGTLTAEQVIEMAWGLEQS--KQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRT-HGMG 346 (436)
Q Consensus 270 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~n 346 (436)
+++++|++..|+... ...+..+++++.+. +.++++..+.+. .+-+.+.+.. ...+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------------------~l~~~l~~~~~~~~~ 257 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------------------ELKRSLTAKFKSNEN 257 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------------------HHHHHHHHHhccCCC
Confidence 356788888888752 23455555554332 345655544321 0111222222 1247
Q ss_pred EEecccCCh-hhhcCccCceeeeeccCcccHHHHHHcCCcEeec-cccccchhHHHHHHhhhcceeeecccccccccccc
Q 047445 347 MVVPSWAPQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAW-PLYAEQKMNAAMLTEETRGGRKASNRIGKESDRTG 424 (436)
Q Consensus 347 v~v~~~~pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~-P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~~~~ 424 (436)
+.+.+|+++ .++++.+|+ +|+-.|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+... +.+++.+++
T Consensus 258 v~~~G~~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~--~~~~l~~~i 332 (391)
T PRK13608 258 VLILGYTKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD--TPEEAIKIV 332 (391)
T ss_pred eEEEeccchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC--CHHHHHHHH
Confidence 888899976 589999994 99988888999999999999998 666667789998866 56666554 466677666
Q ss_pred ccccC
Q 047445 425 RDREG 429 (436)
Q Consensus 425 ~~~~~ 429 (436)
.+...
T Consensus 333 ~~ll~ 337 (391)
T PRK13608 333 ASLTN 337 (391)
T ss_pred HHHhc
Confidence 65544
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.17 E-value=4.9e-09 Score=102.22 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=64.7
Q ss_pred CcEEecccCCh-hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccch-hHHHHHHhhhcceeeecccccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQK-MNAAMLTEETRGGRKASNRIGKESDR 422 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~-~nA~~v~~~~G~g~~~~~~~~~~~~~ 422 (436)
.++.+.+|+++ .++++.+| ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|+.. .+++++.+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~ 339 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS--ESPKEIAR 339 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec--CCHHHHHH
Confidence 36888899986 58999999 4999999899999999999999998776776 68888866 4555544 46778888
Q ss_pred ccccccCC
Q 047445 423 TGRDREGS 430 (436)
Q Consensus 423 ~~~~~~~~ 430 (436)
++.+...+
T Consensus 340 ~i~~ll~~ 347 (382)
T PLN02605 340 IVAEWFGD 347 (382)
T ss_pred HHHHHHcC
Confidence 88766554
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.14 E-value=2.2e-09 Score=94.83 Aligned_cols=261 Identities=20% Similarity=0.232 Sum_probs=155.9
Q ss_pred CEEEEEcCC----CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCch
Q 047445 11 PHVAVLASP----GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMP 86 (436)
Q Consensus 11 ~~il~~~~p----~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (436)
|||+|.+-+ |.||+.+++.||++|.++ |..++|++.+. .+....+.-..+.+. .
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~------~e~~~~~~~~~f~~~--------~------- 58 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQD------IEAIIHKVYEGFKVL--------E------- 58 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccc------hhhhhhhhhhhccce--------e-------
Confidence 688998865 779999999999999999 99999999998 433222210001100 0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHH---HHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCC
Q 047445 87 VITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAF---EICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGE 163 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~---~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (436)
. ..-..|++. ++|++|.|.+..-+- .+..+++.+.+.+..-....+-
T Consensus 59 -----------~---~~~n~ik~~-k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~--------------- 108 (318)
T COG3980 59 -----------G---RGNNLIKEE-KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK--------------- 108 (318)
T ss_pred -----------e---ecccccccc-cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh---------------
Confidence 0 001256676 999999999877553 4777889998887543211000
Q ss_pred CCCCCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCC--
Q 047445 164 FFDLPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPP-- 241 (436)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~-- 241 (436)
+ .....+..... +....+ .|.
T Consensus 109 -------------------d------------~d~ivN~~~~a--------~~~y~~------------------v~~k~ 131 (318)
T COG3980 109 -------------------D------------NDLIVNAILNA--------NDYYGL------------------VPNKT 131 (318)
T ss_pred -------------------h------------hHhhhhhhhcc--------hhhccc------------------cCcce
Confidence 0 00000000000 000000 122
Q ss_pred eeeeccCccC-CCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHH-HHHHHHHHHHhCCCcEEEEEeCCCCCCcccc
Q 047445 242 IYPIGPLIKQ-DETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAE-QVIEMAWGLEQSKQRFIWVVRMPSDASASAT 319 (436)
Q Consensus 242 v~~VGpl~~~-~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 319 (436)
-++.||=... ++.=....++. +.+ +..-|+|++|.. ++. ..-.++..|.+.++.+-.+++...
T Consensus 132 ~~~lGp~y~~lr~eF~~~r~~~---~~r--~~r~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~~------- 196 (318)
T COG3980 132 RYYLGPGYAPLRPEFYALREEN---TER--PKRDILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSSN------- 196 (318)
T ss_pred EEEecCCceeccHHHHHhHHHH---hhc--chheEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCCC-------
Confidence 3555653221 10000011111 111 233599999864 444 455688888888777667766332
Q ss_pred cccCCCCCCCccCcCchhHHHhcC-CCcEEecccCC-hhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchh
Q 047445 320 FFNVGSDVNDPQAYLPEGFLQRTH-GMGMVVPSWAP-QVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKM 397 (436)
Q Consensus 320 ~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~p-q~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~ 397 (436)
..+.....+.. .+|+....... ...+++.+| +.|+-||. |+.|++.-|+|.+++|+..-|--
T Consensus 197 -------------p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~ 260 (318)
T COG3980 197 -------------PTLKNLRKRAEKYPNINLYIDTNDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIA 260 (318)
T ss_pred -------------cchhHHHHHHhhCCCeeeEecchhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHH
Confidence 11123333332 23555544444 357999999 69999886 89999999999999999999999
Q ss_pred HHHHHHhhhcceeee
Q 047445 398 NAAMLTEETRGGRKA 412 (436)
Q Consensus 398 nA~~v~~~~G~g~~~ 412 (436)
-|...+. +|+-...
T Consensus 261 ~a~~f~~-lg~~~~l 274 (318)
T COG3980 261 TAKEFEA-LGIIKQL 274 (318)
T ss_pred HHHHHHh-cCchhhc
Confidence 9998865 6776555
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.03 E-value=7.3e-08 Score=96.59 Aligned_cols=127 Identities=14% Similarity=0.083 Sum_probs=75.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEeccc
Q 047445 274 VIFVAPGSGGTLTAEQVIEMAWGLEQS-KQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSW 352 (436)
Q Consensus 274 vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~ 352 (436)
.+++..|+.. ..+.+..++++++.. +.+++++ +.+. .-+.+.+.....++.+.+|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G~---------------------~~~~l~~~~~~~~V~f~G~ 319 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDGP---------------------YREELEKMFAGTPTVFTGM 319 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCCh---------------------HHHHHHHHhccCCeEEecc
Confidence 3455567753 233466677787765 4454444 3221 1123444444458888899
Q ss_pred CChh---hhcCccCceeeeeccC----cccHHHHHHcCCcEeeccccccchhHHHHHHh--hhcceeeeccccccccccc
Q 047445 353 APQV---EILRHSSTGGFLSHCG----WNSSLESICHGVPMIAWPLYAEQKMNAAMLTE--ETRGGRKASNRIGKESDRT 423 (436)
Q Consensus 353 ~pq~---~lL~~~~v~~~I~HGG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~--~~G~g~~~~~~~~~~~~~~ 423 (436)
+++. .+|+.+|+ ||.-.. .+++.||+++|+|+|+....+ ....+.+ .-+.|+-...-+++++.++
T Consensus 320 v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~d~~~la~~ 393 (465)
T PLN02871 320 LQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPGDVDDCVEK 393 (465)
T ss_pred CCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCCCHHHHHHH
Confidence 9854 58889996 664332 346889999999999876532 2223322 0244555555567777777
Q ss_pred cccccCC
Q 047445 424 GRDREGS 430 (436)
Q Consensus 424 ~~~~~~~ 430 (436)
+.+...+
T Consensus 394 i~~ll~~ 400 (465)
T PLN02871 394 LETLLAD 400 (465)
T ss_pred HHHHHhC
Confidence 7666543
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.02 E-value=8e-08 Score=92.42 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=56.2
Q ss_pred CcEEecccCChh---hhcCccCceeeeeccC----cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSHCG----WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~HGG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
.|+.+.+|+++. ++|+.+|+ +|+.+. .+++.||+++|+|+|+.+..+ +...+.+ .+.|.-....+.
T Consensus 247 ~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~~~~~ 319 (364)
T cd03814 247 PNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVEPGDA 319 (364)
T ss_pred CcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcCCCCH
Confidence 488998999875 48999995 776654 478999999999999987554 4444544 355555555566
Q ss_pred cccccccccccCC
Q 047445 418 KESDRTGRDREGS 430 (436)
Q Consensus 418 ~~~~~~~~~~~~~ 430 (436)
+++..++.+...+
T Consensus 320 ~~l~~~i~~l~~~ 332 (364)
T cd03814 320 EAFAAALAALLAD 332 (364)
T ss_pred HHHHHHHHHHHcC
Confidence 6677777665443
No 47
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.94 E-value=6e-07 Score=84.50 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhH
Q 047445 22 GHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKS 101 (436)
Q Consensus 22 GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (436)
-|+.-+..+.++|.++ ||+|.+.+-.. ....+++..++ +++..+... +......+.....+...
T Consensus 11 ~hvhfFk~~I~eL~~~-GheV~it~R~~----~~~~~LL~~yg--~~y~~iG~~--------g~~~~~Kl~~~~~R~~~- 74 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKR-GHEVLITARDK----DETEELLDLYG--IDYIVIGKH--------GDSLYGKLLESIERQYK- 74 (335)
T ss_pred hHHHHHHHHHHHHHhC-CCEEEEEEecc----chHHHHHHHcC--CCeEEEcCC--------CCCHHHHHHHHHHHHHH-
Confidence 3999999999999999 99999998765 12567777777 888877732 22344455555554444
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecch
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
+.+++++. +||++|+-. ...+..+|..+|+|+|.+.=+.
T Consensus 75 -l~~~~~~~-~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 75 -LLKLIKKF-KPDVAISFG-SPEAARVAFGLGIPSIVFNDTE 113 (335)
T ss_pred -HHHHHHhh-CCCEEEecC-cHHHHHHHHHhCCCeEEEecCc
Confidence 55677778 999999744 5566689999999999886543
No 48
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.89 E-value=2.2e-07 Score=90.65 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=55.6
Q ss_pred cEEecccCCh-hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHhh--h-cceeeeccccccccc
Q 047445 346 GMVVPSWAPQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEE--T-RGGRKASNRIGKESD 421 (436)
Q Consensus 346 nv~v~~~~pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~--~-G~g~~~~~~~~~~~~ 421 (436)
++.+..+..+ .++++.+| ++|+=.|..| .|+...|+|+|++|.-..|. ||...++. + |-.+-+...+.+.+.
T Consensus 280 ~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~~~~~~l~ 355 (396)
T TIGR03492 280 TLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLASKNPEQAA 355 (396)
T ss_pred ceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCCCCHHHHH
Confidence 3555455544 68999999 5999999766 99999999999999766676 88766441 1 555555444456666
Q ss_pred cccccccC
Q 047445 422 RTGRDREG 429 (436)
Q Consensus 422 ~~~~~~~~ 429 (436)
.++.+...
T Consensus 356 ~~l~~ll~ 363 (396)
T TIGR03492 356 QVVRQLLA 363 (396)
T ss_pred HHHHHHHc
Confidence 66655443
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.86 E-value=4e-07 Score=87.28 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=54.7
Q ss_pred CCcEEecccCChh---hhcCccCceeeee----ccC-cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccc
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFLS----HCG-WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNR 415 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I~----HGG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~ 415 (436)
..++.+.+|+++. .+++.+|+ +|. ..| -.++.||+++|+|+|+.+.. .+...+.++ +.|.-....
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECCC
Confidence 3588898999764 56999996 552 233 34789999999999997643 345555442 345555555
Q ss_pred cccccccccccccCC
Q 047445 416 IGKESDRTGRDREGS 430 (436)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (436)
+.+++.+++.+..++
T Consensus 315 d~~~l~~~i~~l~~~ 329 (359)
T cd03823 315 DAEDLAAALERLIDD 329 (359)
T ss_pred CHHHHHHHHHHHHhC
Confidence 577888877766543
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.83 E-value=4.9e-07 Score=87.49 Aligned_cols=80 Identities=13% Similarity=0.004 Sum_probs=53.4
Q ss_pred CCcEEecccCChh---hhcCccCceeeeeccC---------cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceee
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFLSHCG---------WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRK 411 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I~HGG---------~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~ 411 (436)
..|+.+..++++. +++..+|+ +|.... -+++.||+++|+|+|+.+..+.+... .++ +.|.-
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~-~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEA-GAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccC-CcceE
Confidence 3588888999864 57889996 553322 22379999999999999876654432 221 44455
Q ss_pred eccccccccccccccccCC
Q 047445 412 ASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (436)
....+.+++.+++.+...+
T Consensus 347 ~~~~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 347 VPPGDPEALAAAILELLDD 365 (394)
T ss_pred eCCCCHHHHHHHHHHHHhC
Confidence 5555677788777766543
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.74 E-value=3.4e-06 Score=80.52 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
+|++++....|+...+..++++|.++ ||+|++++...... ...... ++.+..++.... .......+
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~------~~~~~~~~ 66 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDEL-----EELEAL--GVKVIPIPLDRR------GINPFKDL 66 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhc-CCeeEEEecCCCcc-----cccccC--CceEEecccccc------ccChHhHH
Confidence 47888887889999999999999998 99999999887111 122222 366555543221 01111111
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch--HHHHHHHcCCCeEEEe
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ--AFEICSQLSIPTYSFV 140 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~--~~~~A~~~giP~v~~~ 140 (436)
. ... .+.+.++.. +||+|++...... +..++...+.|.+...
T Consensus 67 ~-----~~~-~~~~~~~~~-~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 67 K-----ALL-RLYRLLRKE-RPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred H-----HHH-HHHHHHHhc-CCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 1 122 455677777 9999998864443 3344554666655443
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.71 E-value=7e-06 Score=81.02 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHH
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
+..||.+++....|+-..+..+|+.|+++ ||+|++++...... ..+..... ++.++.+..... .. .......
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~---~~~~~~~~--~v~~~~~~~~~~-~~-~~~~~~~ 73 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPP---HDEILSNP--NITIHPLPPPPQ-RL-NKLPFLL 73 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCC---CHHHhcCC--CEEEEECCCCcc-cc-ccchHHH
Confidence 45678888888888889999999999999 99999999765111 11112222 477777653210 00 0001111
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC-Ccc----hHHHHHHHcCCCeEEEec
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVIDL-FCT----QAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~-~~~----~~~~~A~~~giP~v~~~~ 141 (436)
..+......... .+..+++.. +||+|++.. ... .+..++...++|+|..+.
T Consensus 74 ~~~~~~~~~~~~-~~~~l~~~~-~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 74 FAPLKVLWQFFS-LLWLLYKLR-PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHHHHHHHH-HHHHHHhcC-CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 111222222222 334455555 899999754 221 133456667999876544
No 53
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.71 E-value=3.7e-06 Score=82.23 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=55.5
Q ss_pred CcEEecccCChhh---hcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 345 MGMVVPSWAPQVE---ILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 345 ~nv~v~~~~pq~~---lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
.|+.+.+|+|+.+ +++.+|+ +++. |-..++.||+++|+|+|+....+ ....+.+ .+.|+-....++
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~-~~~g~~~~~~~~ 355 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVD-GVTGLLVDPRDP 355 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccC-CCCeEEeCCCCH
Confidence 4888999999754 6889995 6643 32468999999999999876543 4444544 245555555567
Q ss_pred cccccccccccCC
Q 047445 418 KESDRTGRDREGS 430 (436)
Q Consensus 418 ~~~~~~~~~~~~~ 430 (436)
+++.+++.+...+
T Consensus 356 ~~l~~~i~~l~~~ 368 (398)
T cd03800 356 EALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHHHHHhC
Confidence 8888887766544
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.71 E-value=1.8e-06 Score=83.01 Aligned_cols=78 Identities=10% Similarity=0.084 Sum_probs=49.9
Q ss_pred CcEEecccCChh---hhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
.++.+.+++|+. .++..+|+ +|.. |..+++.||+++|+|+|+... ...+..+.+ -+.|.-......
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~~~~ 331 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPPGDE 331 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCCCCH
Confidence 488888999875 47889996 5533 334689999999999999764 334455544 133333333222
Q ss_pred cccccccccccCC
Q 047445 418 KESDRTGRDREGS 430 (436)
Q Consensus 418 ~~~~~~~~~~~~~ 430 (436)
++.+++....++
T Consensus 332 -~~~~~i~~l~~~ 343 (374)
T cd03817 332 -ALAEALLRLLQD 343 (374)
T ss_pred -HHHHHHHHHHhC
Confidence 666666555443
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.70 E-value=2.1e-06 Score=83.18 Aligned_cols=77 Identities=14% Similarity=0.041 Sum_probs=49.5
Q ss_pred CcEEecccCCh-hhhcCccCceeee----eccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFL----SHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKE 419 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I----~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~ 419 (436)
.++.+.++.++ .++|..+|+ +| .-|...++.||+++|+|+|+.... ..+..+.++ ..|.-....+.++
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~~~ 325 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHG-ETGFLVDVGDVEA 325 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCC-CceEEcCCCCHHH
Confidence 46888788775 688999996 55 223455999999999999996543 344455441 2333333344566
Q ss_pred ccccccccc
Q 047445 420 SDRTGRDRE 428 (436)
Q Consensus 420 ~~~~~~~~~ 428 (436)
+.+++.+..
T Consensus 326 l~~~i~~l~ 334 (371)
T cd04962 326 MAEYALSLL 334 (371)
T ss_pred HHHHHHHHH
Confidence 666665543
No 56
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.62 E-value=7.2e-07 Score=86.37 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=79.9
Q ss_pred CCeEEEEecCCCCCC-CHHHHHHHHHHHHhCCC-cEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcC--CCc
Q 047445 271 SDSVIFVAPGSGGTL-TAEQVIEMAWGLEQSKQ-RFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTH--GMG 346 (436)
Q Consensus 271 ~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~n 346 (436)
+++.|++++|..... ..+.+..++++++.... ++.+++..+.. ....+-+ ...+.. ..+
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~----------------~~~~l~~-~~~~~~~~~~~ 259 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR----------------TRPRIRE-AGLEFLGHHPN 259 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC----------------hHHHHHH-HHHhhccCCCC
Confidence 456788888876433 45667788888877543 25554433211 0011111 111111 357
Q ss_pred EEecccCChh---hhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccccccc
Q 047445 347 MVVPSWAPQV---EILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKESDRT 423 (436)
Q Consensus 347 v~v~~~~pq~---~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~~~ 423 (436)
+.+.+..++. .++..+| +||+-.| |.+.||++.|+|+|+++...+ +..+.+ .|+++.... +.+++.++
T Consensus 260 v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~~-~~~~i~~~ 330 (363)
T cd03786 260 VLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVGT-DPEAILAA 330 (363)
T ss_pred EEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecCC-CHHHHHHH
Confidence 7776665543 5688899 5999998 777899999999999874322 222333 466655542 46777777
Q ss_pred cccccCC
Q 047445 424 GRDREGS 430 (436)
Q Consensus 424 ~~~~~~~ 430 (436)
+.+...+
T Consensus 331 i~~ll~~ 337 (363)
T cd03786 331 IEKLLSD 337 (363)
T ss_pred HHHHhcC
Confidence 7665544
No 57
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.57 E-value=5.2e-05 Score=74.79 Aligned_cols=81 Identities=9% Similarity=-0.023 Sum_probs=52.3
Q ss_pred CcEEecccCChh---hhcCccCceeeeeccCc------ccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSHCGW------NSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNR 415 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~HGG~------~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~ 415 (436)
.|+.+.+|+|+. ++|+.+|+.++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+-...-
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~~ 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEPE 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCCC
Confidence 478888999864 57999997444444322 2368999999999998754321 11223 2 344544555
Q ss_pred cccccccccccccCC
Q 047445 416 IGKESDRTGRDREGS 430 (436)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (436)
+.+++.+++.+...+
T Consensus 359 d~~~la~~i~~l~~~ 373 (412)
T PRK10307 359 SVEALVAAIAALARQ 373 (412)
T ss_pred CHHHHHHHHHHHHhC
Confidence 678888888766543
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.56 E-value=4.2e-06 Score=82.97 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=55.5
Q ss_pred EEecccCCh-hhhcCccCceeeee----ccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccccc
Q 047445 347 MVVPSWAPQ-VEILRHSSTGGFLS----HCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKESD 421 (436)
Q Consensus 347 v~v~~~~pq-~~lL~~~~v~~~I~----HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~ 421 (436)
+++.+...+ ..+++.+|+ +|+. -||..++.||+++|+|+|+-|..+++......+.+ .|..+... +++++.
T Consensus 304 v~l~~~~~el~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~~--d~~~La 379 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQVE--DAEDLA 379 (425)
T ss_pred EEEEecHHHHHHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEEC--CHHHHH
Confidence 444444333 578899996 4552 13444699999999999999998888888777644 46666644 367777
Q ss_pred cccccccCC
Q 047445 422 RTGRDREGS 430 (436)
Q Consensus 422 ~~~~~~~~~ 430 (436)
+++.+..++
T Consensus 380 ~~l~~ll~~ 388 (425)
T PRK05749 380 KAVTYLLTD 388 (425)
T ss_pred HHHHHHhcC
Confidence 777666543
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.52 E-value=1.9e-05 Score=75.37 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=55.6
Q ss_pred CCcEEecccCCh---hhhcCccCceeeee----ccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccc
Q 047445 344 GMGMVVPSWAPQ---VEILRHSSTGGFLS----HCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRI 416 (436)
Q Consensus 344 ~~nv~v~~~~pq---~~lL~~~~v~~~I~----HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~ 416 (436)
..++.+.+++++ ..+|..+|+ +|. -|..+++.||+++|+|+|+.+. ......+.+ -+.|+-....+
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~~~ 327 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPPGD 327 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCCCC
Confidence 458888899974 368899996 552 3556799999999999999775 334455543 24455555555
Q ss_pred ccccccccccccCC
Q 047445 417 GKESDRTGRDREGS 430 (436)
Q Consensus 417 ~~~~~~~~~~~~~~ 430 (436)
++++.+++.+...+
T Consensus 328 ~~~l~~~i~~~~~~ 341 (374)
T cd03801 328 PEALAEAILRLLDD 341 (374)
T ss_pred HHHHHHHHHHHHcC
Confidence 77888777765443
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.51 E-value=3.7e-05 Score=73.65 Aligned_cols=81 Identities=11% Similarity=0.038 Sum_probs=56.7
Q ss_pred CCcEEecccCChh---hhcCccCceeee----eccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccc
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFL----SHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRI 416 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I----~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~ 416 (436)
..|+.+.+++++. .++..+|+ +| +-|..+++.||+++|+|+|+-+..+ ....+.+ .+.|.-....+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~-~~~g~~~~~~~ 330 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITD-GENGLLVPPGD 330 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcC-CcceeEECCCC
Confidence 3488998999864 67888996 44 2355678999999999999876543 3444544 34456666667
Q ss_pred ccccccccccccCCC
Q 047445 417 GKESDRTGRDREGSE 431 (436)
Q Consensus 417 ~~~~~~~~~~~~~~~ 431 (436)
.+++.+++.+...+.
T Consensus 331 ~~~l~~~i~~~~~~~ 345 (377)
T cd03798 331 PEALAEAILRLLADP 345 (377)
T ss_pred HHHHHHHHHHHhcCc
Confidence 788888877765543
No 61
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.50 E-value=2.4e-05 Score=76.78 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=53.9
Q ss_pred CCcEEecccCChh---hhcCccCceeeee---ccCc-ccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccc
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFLS---HCGW-NSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRI 416 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I~---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~ 416 (436)
..++.+.+++|+. .+|..+|+ +|. +.|. .++.||+++|+|+|+... ......+.++ ..|+-....+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~~d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDFFD 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCCCC
Confidence 4588899999975 47789996 542 2232 479999999999998643 3444555332 3345444556
Q ss_pred ccccccccccccCC
Q 047445 417 GKESDRTGRDREGS 430 (436)
Q Consensus 417 ~~~~~~~~~~~~~~ 430 (436)
++++.+++.+...+
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 78888888776554
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.46 E-value=2.5e-05 Score=75.02 Aligned_cols=130 Identities=11% Similarity=-0.061 Sum_probs=77.3
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHH----hcCCCcE
Q 047445 273 SVIFVAPGSGGTLTAEQVIEMAWGLEQSK-QRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQ----RTHGMGM 347 (436)
Q Consensus 273 ~vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~----~~~~~nv 347 (436)
..+++..|+.. ..+....+++++++.. .++++.-.+.. .+.+.+ .-...||
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~~----------------------~~~~~~~~~~~~~~~~V 246 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGPL----------------------EAELEALAAALGLLDRV 246 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCChh----------------------HHHHHHHHHhcCCcceE
Confidence 34666777753 2334556777777776 44444332211 112221 1234589
Q ss_pred EecccCChh---hhcCccCceeeee---ccCc-ccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccccccc
Q 047445 348 VVPSWAPQV---EILRHSSTGGFLS---HCGW-NSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKES 420 (436)
Q Consensus 348 ~v~~~~pq~---~lL~~~~v~~~I~---HGG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~ 420 (436)
.+.+|+|+. .+++.+|+.++-+ +.|. .++.||+++|+|+|+....+.+..... + -+.|.-....+.+++
T Consensus 247 ~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~~d~~~~ 322 (357)
T cd03795 247 RFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPPGDPAAL 322 (357)
T ss_pred EEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCCCCHHHH
Confidence 999999974 5888899733222 2343 479999999999999776655543322 1 234444445567778
Q ss_pred ccccccccCC
Q 047445 421 DRTGRDREGS 430 (436)
Q Consensus 421 ~~~~~~~~~~ 430 (436)
.+++.+...+
T Consensus 323 ~~~i~~l~~~ 332 (357)
T cd03795 323 AEAIRRLLED 332 (357)
T ss_pred HHHHHHHHHC
Confidence 8887766544
No 63
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.40 E-value=4.9e-05 Score=73.24 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=33.7
Q ss_pred CEEEEEcCC--CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASP--GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p--~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|||+++... ..|+-.-...++++|.++ ||+|++++...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~-G~~v~v~~~~~ 40 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAA-GVDSTMLVQEK 40 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhc-CCceeEEEeec
Confidence 688888764 368999999999999999 99999999887
No 64
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.36 E-value=4.9e-05 Score=72.19 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=46.2
Q ss_pred CcEEecccCCh-hhhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKE 419 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~ 419 (436)
.++.+.++.++ .++++.+|+ +|.- |.-+++.||+++|+|+|+.... .....+.+ -..|+-....+.+.
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~~~~~ 318 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPVGDEAA 318 (353)
T ss_pred ccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECCCCHHH
Confidence 47888888775 579999996 5532 3356899999999999986543 44555544 24444444444555
Q ss_pred c
Q 047445 420 S 420 (436)
Q Consensus 420 ~ 420 (436)
+
T Consensus 319 ~ 319 (353)
T cd03811 319 L 319 (353)
T ss_pred H
Confidence 5
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.35 E-value=0.00014 Score=71.00 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=51.1
Q ss_pred CCcEEecccCChh---hhcCccCceeeeec---cC-cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccc
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFLSH---CG-WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRI 416 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I~H---GG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~ 416 (436)
..++.+.+++|+. .+|..+|+ ++.. -| ..++.||+++|+|+|+.-..+ ....+.++ +.|+-... +
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~~-~ 350 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCEP-T 350 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeCC-C
Confidence 3589999999975 57899996 5432 12 357899999999999975433 33344332 23433333 5
Q ss_pred ccccccccccccCC
Q 047445 417 GKESDRTGRDREGS 430 (436)
Q Consensus 417 ~~~~~~~~~~~~~~ 430 (436)
++++.+++.+...+
T Consensus 351 ~~~~a~~i~~l~~~ 364 (392)
T cd03805 351 PEEFAEAMLKLAND 364 (392)
T ss_pred HHHHHHHHHHHHhC
Confidence 67777777665443
No 66
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.34 E-value=7.4e-05 Score=70.85 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=52.4
Q ss_pred CcEEecccCCh-hhhcCccCceeeeecc----CcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLSHC----GWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKE 419 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~HG----G~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~ 419 (436)
.++.+..+... ..++..+|+ +|.-. .-+++.||+++|+|+|+.+..+.+... +.++ ..|+-....+.++
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~---~~~~-~~g~~~~~~~~~~ 308 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEI---IEDG-VNGLLVPNGDVEA 308 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHhh---hccC-cceEEeCCCCHHH
Confidence 36777777443 579999995 55443 256899999999999997655443321 2222 2455555556788
Q ss_pred cccccccccCC
Q 047445 420 SDRTGRDREGS 430 (436)
Q Consensus 420 ~~~~~~~~~~~ 430 (436)
+.+++.+...+
T Consensus 309 ~~~~i~~ll~~ 319 (348)
T cd03820 309 LAEALLRLMED 319 (348)
T ss_pred HHHHHHHHHcC
Confidence 88888776544
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.32 E-value=0.00017 Score=69.26 Aligned_cols=77 Identities=9% Similarity=-0.050 Sum_probs=48.8
Q ss_pred CcEEecccCChh---hhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
.++.+.+|+++. .++..+|+ +|.- |-.+++.||+++|+|+|+.+..+ ....+.+ +.|.-... +.
T Consensus 262 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~--~~~~~~~~-~~ 332 (375)
T cd03821 262 DRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY--GCGWVVDD-DV 332 (375)
T ss_pred ceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc--CceEEeCC-Ch
Confidence 488899999954 46889996 4432 22468999999999999976433 3333322 33333322 23
Q ss_pred cccccccccccCC
Q 047445 418 KESDRTGRDREGS 430 (436)
Q Consensus 418 ~~~~~~~~~~~~~ 430 (436)
+++.+++.+...+
T Consensus 333 ~~~~~~i~~l~~~ 345 (375)
T cd03821 333 DALAAALRRALEL 345 (375)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666655443
No 68
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.32 E-value=3.4e-05 Score=74.77 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceE-EecCCCCCCCCCCCCchHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDV-VDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 90 (436)
||++ -.+++.|+.-+..+.++|.++.+.++.++.+.. +......+.+.++ +.. +.+. -. ..+......
T Consensus 2 ~i~~-~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~--h~~~~~~~~~~~~--i~~~~~~~-----~~-~~~~~~~~~ 70 (365)
T TIGR00236 2 KVSI-VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQ--HREMLDQVLDLFH--LPPDYDLN-----IM-SPGQTLGEI 70 (365)
T ss_pred eEEE-EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCC--CHHHHHHHHHhcC--CCCCeeee-----cC-CCCCCHHHH
Confidence 4543 557777888899999999886456777777766 1122334433333 221 1111 00 111122222
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEc--CCc-chHHHHHHHcCCCeEEE
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVID--LFC-TQAFEICSQLSIPTYSF 139 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D--~~~-~~~~~~A~~~giP~v~~ 139 (436)
. ..... .+.+++++. +||+|++- ... .+++.+|..+|||++.+
T Consensus 71 ~----~~~~~-~l~~~l~~~-~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 71 T----SNMLE-GLEELLLEE-KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred H----HHHHH-HHHHHHHHc-CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 2 22334 677789999 99999975 333 35668999999998754
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.31 E-value=0.00021 Score=70.28 Aligned_cols=78 Identities=9% Similarity=-0.010 Sum_probs=51.9
Q ss_pred CcEEecccCChh---hhcCccCceeeee---c-cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLS---H-CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~---H-GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
+++.+.+++++. ++|+.+|+ +|. + |...++.||+++|+|+|+....+ ....+.+ -..|+-....+.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~-~~~g~~~~~~d~ 355 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVAD-GETGLLVDGHDP 355 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhcc-CCceEECCCCCH
Confidence 479999999864 67999995 553 2 33458999999999999976543 3334433 233444444456
Q ss_pred cccccccccccC
Q 047445 418 KESDRTGRDREG 429 (436)
Q Consensus 418 ~~~~~~~~~~~~ 429 (436)
+++.+++.+...
T Consensus 356 ~~la~~i~~~l~ 367 (405)
T TIGR03449 356 ADWADALARLLD 367 (405)
T ss_pred HHHHHHHHHHHh
Confidence 777777766544
No 70
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.31 E-value=0.00011 Score=69.85 Aligned_cols=125 Identities=11% Similarity=0.018 Sum_probs=68.9
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhc--CCCcEEeccc
Q 047445 275 IFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRT--HGMGMVVPSW 352 (436)
Q Consensus 275 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~ 352 (436)
+.+..|... ..+....+++++++.+.++++.-.+... ..+ ....... ...++.+.++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~------------------~~~-~~~~~~~~~~~~~v~~~G~ 231 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP------------------DYF-YREIAPELLDGPDIEYLGE 231 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH------------------HHH-HHHHHHhcccCCcEEEeCC
Confidence 334456652 2233456777888877776655433211 000 1111111 2458999999
Q ss_pred CChh---hhcCccCceeeee--ccC-cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccccccccccccc
Q 047445 353 APQV---EILRHSSTGGFLS--HCG-WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKESDRTGRD 426 (436)
Q Consensus 353 ~pq~---~lL~~~~v~~~I~--HGG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~~~~~~ 426 (436)
+++. .+++.+|+-++-+ +-| ..++.||+++|+|+|+....+ ....+.++ ..|+-... .+++.+++..
T Consensus 232 ~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~-~~g~l~~~--~~~l~~~l~~ 304 (335)
T cd03802 232 VGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDG-VTGFLVDS--VEELAAAVAR 304 (335)
T ss_pred CCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCC-CcEEEeCC--HHHHHHHHHH
Confidence 9975 5788999722222 234 358999999999999876532 22333332 12333322 5666666554
Q ss_pred c
Q 047445 427 R 427 (436)
Q Consensus 427 ~ 427 (436)
.
T Consensus 305 l 305 (335)
T cd03802 305 A 305 (335)
T ss_pred H
Confidence 4
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.29 E-value=0.00025 Score=68.12 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 047445 20 GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESL 99 (436)
Q Consensus 20 ~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (436)
..|--.-+..||++|+++ ||+|++++... . ........+ +++..++.... .....+ ...
T Consensus 9 ~gG~e~~~~~l~~~L~~~-g~~v~v~~~~~--~---~~~~~~~~~--~~~~~~~~~~~--------~~~~~~-----~~~ 67 (355)
T cd03819 9 SGGVERGTLELARALVER-GHRSLVASAGG--R---LVAELEAEG--SRHIKLPFISK--------NPLRIL-----LNV 67 (355)
T ss_pred cCcHHHHHHHHHHHHHHc-CCEEEEEcCCC--c---hHHHHHhcC--CeEEEcccccc--------chhhhH-----HHH
Confidence 356677889999999999 99999998765 1 222333334 55555542211 111111 112
Q ss_pred hHHHHHHHHhcCCCcEEEEcCCcc--hHHHHHHHcCCCeEEEec
Q 047445 100 KSSLKAVLIELCNPRALVIDLFCT--QAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 100 ~~~l~~ll~~~~~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~ 141 (436)
. .+..++++. +||+|++..... .+..++..+++|++....
T Consensus 68 ~-~l~~~~~~~-~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 68 A-RLRRLIREE-KVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred H-HHHHHHHHc-CCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 2 355677777 999999875332 333567778999886544
No 72
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.29 E-value=5.1e-06 Score=66.48 Aligned_cols=111 Identities=21% Similarity=0.246 Sum_probs=74.2
Q ss_pred eEEEEecCCCCCCC---HHHHHHHHHHHHhCCC-cEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEE
Q 047445 273 SVIFVAPGSGGTLT---AEQVIEMAWGLEQSKQ-RFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMV 348 (436)
Q Consensus 273 ~vV~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~ 348 (436)
..+|||-||....+ .-.-.+.++.|.+.+. +.|.-++.++. ..++....-.+..++.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------------------~~~d~~~~~~k~~gl~ 64 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------------------FFGDPIDLIRKNGGLT 64 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------------------CCCCHHHhhcccCCeE
Confidence 46999999985311 1112246667777776 55666665421 1122222222333444
Q ss_pred e--cccCCh-hhhcCccCceeeeeccCcccHHHHHHcCCcEeecc----ccccchhHHHHHHh
Q 047445 349 V--PSWAPQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWP----LYAEQKMNAAMLTE 404 (436)
Q Consensus 349 v--~~~~pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P----~~~DQ~~nA~~v~~ 404 (436)
+ .+|-|- .+..+.+| ++|.|+|.||++|.|..|+|.|+++ +-..|-.-|..+++
T Consensus 65 id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~ 125 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE 125 (170)
T ss_pred EEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh
Confidence 4 356775 67777899 5999999999999999999999999 35578888888866
No 73
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.28 E-value=0.00024 Score=68.27 Aligned_cols=79 Identities=13% Similarity=-0.011 Sum_probs=52.9
Q ss_pred CcEEecccCCh-hhhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKE 419 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~ 419 (436)
.++.+.++..+ .++++.+|+ +|+- |-.+++.||+++|+|+|+--..+ ....+.+ +.+.-....++++
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~~~~~~ 320 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLDESPEI 320 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCCCCHHH
Confidence 47778787554 589999996 4432 44678999999999999876544 2333433 3344444445788
Q ss_pred cccccccccCCC
Q 047445 420 SDRTGRDREGSE 431 (436)
Q Consensus 420 ~~~~~~~~~~~~ 431 (436)
+.+++.+...++
T Consensus 321 ~a~~i~~l~~~~ 332 (358)
T cd03812 321 WAEEILKLKSED 332 (358)
T ss_pred HHHHHHHHHhCc
Confidence 888887765443
No 74
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.25 E-value=0.00033 Score=67.73 Aligned_cols=318 Identities=14% Similarity=0.127 Sum_probs=155.4
Q ss_pred EcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhH--HHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHH
Q 047445 16 LASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAA--QEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHA 93 (436)
Q Consensus 16 ~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (436)
+..+++-...-+..+.++|+++.+.++.++.+..-..... ....+...+ +... +..+..-. .... ..+..
T Consensus 5 ~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~--~~~~--~~~~~~~~-~~~~---~~~~~ 76 (365)
T TIGR03568 5 VVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDG--FDID--EKIEILLD-SDSN---AGMAK 76 (365)
T ss_pred EEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcC--CCCC--CccccccC-CCCC---CCHHH
Confidence 4455666667777778888874378988888876221110 012222222 2211 11111000 1111 11223
Q ss_pred HHHHhhhHHHHHHHHhcCCCcEEEEc--CCcc-hHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCCCc
Q 047445 94 IVDESLKSSLKAVLIELCNPRALVID--LFCT-QAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLPEP 170 (436)
Q Consensus 94 ~~~~~~~~~l~~ll~~~~~pD~vI~D--~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (436)
.+..... .+.+++++. +||+|++- .+.. .++.+|..+|||++-+.-...+
T Consensus 77 ~~~~~~~-~~~~~~~~~-~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs------------------------- 129 (365)
T TIGR03568 77 SMGLTII-GFSDAFERL-KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVT------------------------- 129 (365)
T ss_pred HHHHHHH-HHHHHHHHh-CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccC-------------------------
Confidence 3333444 677788888 99999954 3333 5568999999999865433210
Q ss_pred cccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeeccCcc
Q 047445 171 IEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIGPLIK 250 (436)
Q Consensus 171 ~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGpl~~ 250 (436)
.+ .++ ...+.....+..+. +.++ +...-..++.. . +..+++.+|....
T Consensus 130 ---~~--------~~e-------E~~r~~i~~la~l~-----f~~t----~~~~~~L~~eg----~-~~~~i~~tG~~~i 177 (365)
T TIGR03568 130 ---EG--------AID-------ESIRHAITKLSHLH-----FVAT----EEYRQRVIQMG----E-DPDRVFNVGSPGL 177 (365)
T ss_pred ---CC--------Cch-------HHHHHHHHHHHhhc-----cCCC----HHHHHHHHHcC----C-CCCcEEEECCcHH
Confidence 00 000 00111111111000 0000 00001111111 0 0113777775332
Q ss_pred CCCC--CCCChhHHhhhhcCCCCCeEEEEecCCCC---CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCC
Q 047445 251 QDET--LSASDEECLAWLGKQPSDSVIFVAPGSGG---TLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGS 325 (436)
Q Consensus 251 ~~~~--~~~~~~~l~~~l~~~~~~~vV~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 325 (436)
+.-. .....+.+.+.+.-.++++.|+|++=-.. ....+.+..+++++...+.++++.+..+..
T Consensus 178 D~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p------------ 245 (365)
T TIGR03568 178 DNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA------------ 245 (365)
T ss_pred HHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC------------
Confidence 2110 00122334343332223468888885432 344677999999998887666666543211
Q ss_pred CCCCccCcCchhHHHhcC-CCcEEecccCCh---hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHH
Q 047445 326 DVNDPQAYLPEGFLQRTH-GMGMVVPSWAPQ---VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAM 401 (436)
Q Consensus 326 ~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq---~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~ 401 (436)
.. ..+-+.+.+-.. ..|+.+.+-+++ ..++++++ ++|+.++.+- .||.+.|||+|.+- +.+. -
T Consensus 246 ---~~-~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~e---~ 312 (365)
T TIGR03568 246 ---GS-RIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQK---G 312 (365)
T ss_pred ---Cc-hHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCch---h
Confidence 00 001111221111 347887776554 56889999 5998885544 99999999999875 2111 1
Q ss_pred HHhhhcceeeeccccccccccccccc
Q 047445 402 LTEETRGGRKASNRIGKESDRTGRDR 427 (436)
Q Consensus 402 v~~~~G~g~~~~~~~~~~~~~~~~~~ 427 (436)
+ + .|..+-.-..+++++..++.+.
T Consensus 313 ~-~-~g~nvl~vg~~~~~I~~a~~~~ 336 (365)
T TIGR03568 313 R-L-RADSVIDVDPDKEEIVKAIEKL 336 (365)
T ss_pred h-h-hcCeEEEeCCCHHHHHHHHHHH
Confidence 1 1 2433322244566666666553
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.18 E-value=0.00012 Score=70.71 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=54.9
Q ss_pred CcEEecccCChh---hhcCccCceeeeec----------cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceee
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSH----------CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRK 411 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~H----------GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~ 411 (436)
.++.+.+++|+. .+++.+|+ +|.- |-.+++.||+++|+|+|+-+..+ ++..+.+ -+.|+-
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~-~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVED-GETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheec-CCeeEE
Confidence 478888999864 56899996 5432 33578999999999999877643 4455534 244455
Q ss_pred eccccccccccccccccCC
Q 047445 412 ASNRIGKESDRTGRDREGS 430 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~ 430 (436)
....+++++.+++.+...+
T Consensus 318 ~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 318 VPEGDVAALAAALGRLLAD 336 (367)
T ss_pred ECCCCHHHHHHHHHHHHcC
Confidence 5555677888888776554
No 76
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.17 E-value=0.00031 Score=67.35 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=51.6
Q ss_pred CcEEecccCChh---hhcCccCceeeee----------ccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceee
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLS----------HCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRK 411 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~----------HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~ 411 (436)
.|+.+.+++|+. .+++++|+ ++. -|.-+++.||+++|+|+|+.+..+ ....+.++ ..|.-
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~~ 308 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGLL 308 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceEE
Confidence 489999999854 57888996 444 234578999999999999976532 22234332 24444
Q ss_pred eccccccccccccccccC
Q 047445 412 ASNRIGKESDRTGRDREG 429 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~ 429 (436)
....+.+++.+++.+...
T Consensus 309 ~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 309 VPPGDPEALADAIERLLD 326 (355)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 444466777777765543
No 77
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.15 E-value=0.0006 Score=66.95 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=63.2
Q ss_pred EEEEEcC---C-CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchH
Q 047445 12 HVAVLAS---P-GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV 87 (436)
Q Consensus 12 ~il~~~~---p-~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (436)
||++++. | .-|-..-...+|+.|+++ ||+|+++++..... ...+. ... ++....++...... ...
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~--~~~~~-~~~--~i~v~~~p~~~~~~----~~~- 69 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKR-GHKVVVITHAYGNR--VGIRY-LTN--GLKVYYLPFVVFYN----QST- 69 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHc-CCeeEEEeccCCcC--CCccc-ccC--ceeEEEecceeccC----Ccc-
Confidence 3555554 3 335567889999999999 99999999764110 00011 111 35555555322100 000
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc----hHHHHHHHcCCCeEEE
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT----QAFEICSQLSIPTYSF 139 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~----~~~~~A~~~giP~v~~ 139 (436)
...+ ..... .+++.++.. +||+|.+-.... .+..+++.+++|+|..
T Consensus 70 ~~~~----~~~~~-~l~~~~~~~-~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 70 LPTF----FGTFP-LLRNILIRE-RITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred ccch----hhhHH-HHHHHHHhc-CCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 0001 11223 566677777 999999775332 2445788899998764
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.13 E-value=0.00096 Score=63.70 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=50.3
Q ss_pred cEEecccCCh-hhhcCccCceeeeeccC----cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccccccc
Q 047445 346 GMVVPSWAPQ-VEILRHSSTGGFLSHCG----WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKES 420 (436)
Q Consensus 346 nv~v~~~~pq-~~lL~~~~v~~~I~HGG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~ 420 (436)
++.+..+..+ .++++.+|+ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..+. ..+.+++
T Consensus 252 ~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~-~g~~~~--~~~~~~l 322 (365)
T cd03807 252 KVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD-TGFLVP--PGDPEAL 322 (365)
T ss_pred eEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc-CCEEeC--CCCHHHH
Confidence 6666665543 579999995 665443 4799999999999998543 344555543 344443 3447777
Q ss_pred ccccccccCC
Q 047445 421 DRTGRDREGS 430 (436)
Q Consensus 421 ~~~~~~~~~~ 430 (436)
.+++.+..++
T Consensus 323 ~~~i~~l~~~ 332 (365)
T cd03807 323 AEAIEALLAD 332 (365)
T ss_pred HHHHHHHHhC
Confidence 7777666554
No 79
>PLN02275 transferase, transferring glycosyl groups
Probab=98.11 E-value=0.002 Score=62.62 Aligned_cols=125 Identities=11% Similarity=0.026 Sum_probs=67.8
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-eEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCC-CCCCCCCc
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGV-HVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDV-SAVTRDDM 85 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (436)
..+-++.++..+-.|.-..+..++..|.++ || +|++++...... ..+..... ++....++.... ... ....
T Consensus 2 ~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~-~~~~v~vi~~~~~~~---~~~~~~~~--~v~v~r~~~~~~~~~~-~~~~ 74 (371)
T PLN02275 2 GRRGRAAVVVLGDFGRSPRMQYHALSLARQ-ASFQVDVVAYGGSEP---IPALLNHP--SIHIHLMVQPRLLQRL-PRVL 74 (371)
T ss_pred CCccEEEEEEecCCCCCHHHHHHHHHHHhc-CCceEEEEEecCCCC---CHHHhcCC--cEEEEECCCccccccc-ccch
Confidence 344566777778889999999999999998 75 799998765211 11212222 377776653111 111 1111
Q ss_pred hHHHHHHHHHHHhhhHHHHHH--HHhcCCCcEEEEcC-Ccc----hHHHHHHHcCCCeEEEecc
Q 047445 86 PVITRLHAIVDESLKSSLKAV--LIELCNPRALVIDL-FCT----QAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~l--l~~~~~pD~vI~D~-~~~----~~~~~A~~~giP~v~~~~~ 142 (436)
.....+..... ... .+... .+.. +||+|++.. ... .+..++...++|+|..+..
T Consensus 75 ~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 75 YALALLLKVAI-QFL-MLLWFLCVKIP-RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred HHHHHHHHHHH-HHH-HHHHHHHhhCC-CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 11111111111 111 12222 3456 999999753 221 2234667789998875443
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.09 E-value=0.00062 Score=67.78 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=51.2
Q ss_pred CcEEecccCChhh---hcCcc----Cceeeeecc---C-cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeec
Q 047445 345 MGMVVPSWAPQVE---ILRHS----STGGFLSHC---G-WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKAS 413 (436)
Q Consensus 345 ~nv~v~~~~pq~~---lL~~~----~v~~~I~HG---G-~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~ 413 (436)
+++.+.+++++.+ +++.+ |+ ||... | -.++.||+++|+|+|+.-..+ ....+.++ ..|+-..
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~-~~G~lv~ 389 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANC-RNGLLVD 389 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCC-CcEEEeC
Confidence 4677878888654 46655 64 76543 3 458999999999999986543 33444331 2344444
Q ss_pred cccccccccccccccCC
Q 047445 414 NRIGKESDRTGRDREGS 430 (436)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (436)
.-+++++.+++.+...+
T Consensus 390 ~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 390 VLDLEAIASALEDALSD 406 (439)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 45577888887766544
No 81
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.06 E-value=0.0013 Score=63.13 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=49.4
Q ss_pred CcEEecc-cCCh---hhhcCccCceeeee----c--cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecc
Q 047445 345 MGMVVPS-WAPQ---VEILRHSSTGGFLS----H--CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASN 414 (436)
Q Consensus 345 ~nv~v~~-~~pq---~~lL~~~~v~~~I~----H--GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~ 414 (436)
.++.+.. |+|+ ..+++.+|+ +|. . |..+++.||+++|+|+|+.+..+ ...+.+ -+.|+-...
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEcC
Confidence 3677664 5885 468889996 442 2 33558899999999999987654 122323 233444444
Q ss_pred ccccccccccccccCC
Q 047445 415 RIGKESDRTGRDREGS 430 (436)
Q Consensus 415 ~~~~~~~~~~~~~~~~ 430 (436)
.+.+++.+++.....+
T Consensus 319 ~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 319 GDPAALAEAIRRLLAD 334 (366)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 4567777777665443
No 82
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.06 E-value=0.00071 Score=65.00 Aligned_cols=75 Identities=5% Similarity=-0.108 Sum_probs=50.6
Q ss_pred CcEEecccCCh-hhhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKE 419 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~ 419 (436)
.|+.+.++..+ .++|+.+|+ +|.- |..+++.||+++|+|+|+. |...+...+.+ .|..+. ..+.++
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~~--~~~~~~ 315 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIVP--ISDPEA 315 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEeC--CCCHHH
Confidence 47888787765 689999996 4432 2256899999999999975 44445555543 455444 345777
Q ss_pred ccccccccc
Q 047445 420 SDRTGRDRE 428 (436)
Q Consensus 420 ~~~~~~~~~ 428 (436)
+.+++.+..
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 777776664
No 83
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.02 E-value=5.8e-05 Score=72.25 Aligned_cols=300 Identities=12% Similarity=0.076 Sum_probs=137.8
Q ss_pred HHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHHHHHhcC
Q 047445 32 KRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKAVLIELC 111 (436)
Q Consensus 32 ~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 111 (436)
|+|.++.+.++.++.+..-+.......+.+.++ + ..++ . .+ ..+ . ......+...+. .+.+.+++.
T Consensus 1 ~~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~--i--~~~~-~---~l-~~~--~-~~~~~~~~~~~~-~~~~~~~~~- 66 (346)
T PF02350_consen 1 KALQKDPGFELILIVTGQHLDPEMGDTFFEGFG--I--PKPD-Y---LL-DSD--S-QSMAKSTGLAII-ELADVLERE- 66 (346)
T ss_dssp -HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT------SEE-E---E---ST--T-S-HHHHHHHHHH-HHHHHHHHH-
T ss_pred ChhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCC--C--CCCC-c---cc-ccc--c-chHHHHHHHHHH-HHHHHHHhc-
Confidence 567776588999999887333444445555443 2 1110 0 00 111 1 122333334455 677889998
Q ss_pred CCcEEEE--cCCcc-hHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCCCccccCCCCCCCcc-ccchh
Q 047445 112 NPRALVI--DLFCT-QAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLPEPIEIPGCPPVRPE-DLLDQ 187 (436)
Q Consensus 112 ~pD~vI~--D~~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~l~~~ 187 (436)
+||+||+ |.+.. +++.+|..++||++-+.... .+.-.. -.+
T Consensus 67 ~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGl---------------------------------Rs~d~~~g~~-- 111 (346)
T PF02350_consen 67 KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGL---------------------------------RSGDRTEGMP-- 111 (346)
T ss_dssp T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--------------------------------------S-TTSSTT--
T ss_pred CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCC---------------------------------CccccCCCCc--
Confidence 9999984 55444 55689999999977654321 000000 000
Q ss_pred hhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeeccCccCCCCC--CCChhHH--h
Q 047445 188 VRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIGPLIKQDETL--SASDEEC--L 263 (436)
Q Consensus 188 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VGpl~~~~~~~--~~~~~~l--~ 263 (436)
....+.....+. +..+..+-... -..++.. . +..+++.+|....+.-.. ....+.+ .
T Consensus 112 -----de~~R~~i~~la-----~lhf~~t~~~~----~~L~~~G----~-~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~ 172 (346)
T PF02350_consen 112 -----DEINRHAIDKLA-----HLHFAPTEEAR----ERLLQEG----E-PPERIFVVGNPGIDALLQNKEEIEEKYKNS 172 (346)
T ss_dssp -----HHHHHHHHHHH------SEEEESSHHHH----HHHHHTT-------GGGEEE---HHHHHHHHHHHTTCC-HHHH
T ss_pred -----hhhhhhhhhhhh-----hhhccCCHHHH----HHHHhcC----C-CCCeEEEEChHHHHHHHHhHHHHhhhhhhH
Confidence 001111111111 11222221111 1111111 0 012488888643322110 0011111 1
Q ss_pred hhhcCCCCCeEEEEecCCCCCCC-H---HHHHHHHHHHHhC-CCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhH
Q 047445 264 AWLGKQPSDSVIFVAPGSGGTLT-A---EQVIEMAWGLEQS-KQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGF 338 (436)
Q Consensus 264 ~~l~~~~~~~vV~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 338 (436)
.++.. ..++.|+|++=...... + ..+..+++++.+. +.++||.+..... . -..+
T Consensus 173 ~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~----------------~----~~~i 231 (346)
T PF02350_consen 173 GILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR----------------G----SDII 231 (346)
T ss_dssp HHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH----------------H----HHHH
T ss_pred HHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch----------------H----HHHH
Confidence 23323 46789999995554444 3 3455566667666 6778888853321 0 0112
Q ss_pred HHhcCC-CcEEecccCCh---hhhcCccCceeeeeccCcccHH-HHHHcCCcEeeccccccchhHHHHHHhhhcceeeec
Q 047445 339 LQRTHG-MGMVVPSWAPQ---VEILRHSSTGGFLSHCGWNSSL-ESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKAS 413 (436)
Q Consensus 339 ~~~~~~-~nv~v~~~~pq---~~lL~~~~v~~~I~HGG~~s~~-eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~ 413 (436)
.+.... +|+.+...+++ ..+|++++ ++|+..| +++ ||.+.|+|+|.+=-.++.+. -+ ..|-.+- -
T Consensus 232 ~~~l~~~~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe---~r--~~~~nvl-v 301 (346)
T PF02350_consen 232 IEKLKKYDNVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNIRDSGERQE---GR--ERGSNVL-V 301 (346)
T ss_dssp HHHHTT-TTEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEECSSS-S-HH---HH--HTTSEEE-E
T ss_pred HHHhcccCCEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEecCCCCCHH---HH--hhcceEE-e
Confidence 222211 38888777765 56888999 6999999 666 99999999999922222221 12 1233333 3
Q ss_pred cccccccccccccccCC
Q 047445 414 NRIGKESDRTGRDREGS 430 (436)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (436)
..+++++..++.++..+
T Consensus 302 ~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 302 GTDPEAIIQAIEKALSD 318 (346)
T ss_dssp TSSHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 36677777777766543
No 84
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=0.0013 Score=62.70 Aligned_cols=311 Identities=15% Similarity=0.116 Sum_probs=161.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEE-cCCCCchhHHHHHhhc-CCCCceEEecCCCCCCCCCCCCchHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLV-ITTNEASAAQEKLLRS-LPDGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
-.+-+-.-+-|-++-.+.|.++|+++. ++.+++-| ++. ..+.+++ +++.+.-.-+| -+.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~T------g~e~a~~~~~~~v~h~YlP---------~D~--- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPT------GAERAAALFGDSVIHQYLP---------LDL--- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCcc------HHHHHHHHcCCCeEEEecC---------cCc---
Confidence 366666778999999999999999985 66777776 444 4444443 44222222222 111
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch--HHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCC
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ--AFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFD 166 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (436)
.. .++..++.+ +||++|.=-...| -+.-+++.|+|.+.+..=-.
T Consensus 112 ----------~~-~v~rFl~~~-~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS---------------------- 157 (419)
T COG1519 112 ----------PI-AVRRFLRKW-RPKLLIIMETELWPNLINELKRRGIPLVLVNARLS---------------------- 157 (419)
T ss_pred ----------hH-HHHHHHHhc-CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec----------------------
Confidence 11 456788889 9998885433333 34678889999887532100
Q ss_pred CCCccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCCCeeeec
Q 047445 167 LPEPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTPPIYPIG 246 (436)
Q Consensus 167 ~~~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~v~~VG 246 (436)
+-...-+.+....++.+.+.+.. ++.-+ +.+.. .+. .+| .++|.-.|
T Consensus 158 ----------------~rS~~~y~k~~~~~~~~~~~i~l------i~aQs--e~D~~---Rf~---~LG---a~~v~v~G 204 (419)
T COG1519 158 ----------------DRSFARYAKLKFLARLLFKNIDL------ILAQS--EEDAQ---RFR---SLG---AKPVVVTG 204 (419)
T ss_pred ----------------hhhhHHHHHHHHHHHHHHHhcce------eeecC--HHHHH---HHH---hcC---CcceEEec
Confidence 00000011111122222222222 22111 11111 111 123 23477777
Q ss_pred cCccCCCCCCCChh---HHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCC--CcEEEEEeCCCCCCcccccc
Q 047445 247 PLIKQDETLSASDE---ECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSK--QRFIWVVRMPSDASASATFF 321 (436)
Q Consensus 247 pl~~~~~~~~~~~~---~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~ 321 (436)
-+=.....+..++. .+...++.. + -+.|..+|. ....+.+-.+.+++.+.. ...||+=+.+.+.++-+...
T Consensus 205 NlKfd~~~~~~~~~~~~~~r~~l~~~--r-~v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~ 280 (419)
T COG1519 205 NLKFDIEPPPQLAAELAALRRQLGGH--R-PVWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLL 280 (419)
T ss_pred ceeecCCCChhhHHHHHHHHHhcCCC--C-ceEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHH
Confidence 76544332222232 344444432 2 255555552 223343555666666543 45677754432210000000
Q ss_pred cCCCCCCCccCcCchhHHHh----cCCCcEEecccCC-hhhhcCccCceeee-----eccCcccHHHHHHcCCcEeeccc
Q 047445 322 NVGSDVNDPQAYLPEGFLQR----THGMGMVVPSWAP-QVEILRHSSTGGFL-----SHCGWNSSLESICHGVPMIAWPL 391 (436)
Q Consensus 322 ~~~~~~~~~~~~lp~~~~~~----~~~~nv~v~~~~p-q~~lL~~~~v~~~I-----~HGG~~s~~eal~~GvP~l~~P~ 391 (436)
. ...+.-...++ ...-++++.+-+- ...+++-+|+ +|| -+||+| ..|++++|+|+|.=|.
T Consensus 281 ~--------~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~ 350 (419)
T COG1519 281 K--------RKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGPY 350 (419)
T ss_pred H--------HcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCCc
Confidence 0 00000000000 0111455555543 4567777887 554 589987 6899999999999999
Q ss_pred cccchhHHHHHHhhhcceeeecccccccccccc
Q 047445 392 YAEQKMNAAMLTEETRGGRKASNRIGKESDRTG 424 (436)
Q Consensus 392 ~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~~~~ 424 (436)
..-|.+.++++.+ .|.++.+++ .+.+.+++
T Consensus 351 ~~Nf~ei~~~l~~-~ga~~~v~~--~~~l~~~v 380 (419)
T COG1519 351 TFNFSDIAERLLQ-AGAGLQVED--ADLLAKAV 380 (419)
T ss_pred cccHHHHHHHHHh-cCCeEEECC--HHHHHHHH
Confidence 9999999999966 566666655 44444444
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.94 E-value=0.0017 Score=63.02 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=50.4
Q ss_pred cEEecccCCh-hhhcCccCceeeee--c--cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccccccc
Q 047445 346 GMVVPSWAPQ-VEILRHSSTGGFLS--H--CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKES 420 (436)
Q Consensus 346 nv~v~~~~pq-~~lL~~~~v~~~I~--H--GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~ 420 (436)
++.+..+..+ .++|+.+|+ +|. + |--+++.||+++|+|+|+-...+ +...+.++ ..|+-....+++++
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~-~~g~~~~~~d~~~l 328 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHG-VTGALVPPGDAVAL 328 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCC-CceEEeCCCCHHHH
Confidence 5666565544 588999996 552 2 44669999999999999976533 34444332 33444445567777
Q ss_pred ccccccccC
Q 047445 421 DRTGRDREG 429 (436)
Q Consensus 421 ~~~~~~~~~ 429 (436)
.+++.+...
T Consensus 329 a~~i~~l~~ 337 (374)
T TIGR03088 329 ARALQPYVS 337 (374)
T ss_pred HHHHHHHHh
Confidence 777766543
No 86
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.78 E-value=0.013 Score=53.48 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=79.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchH-HHHHHHHHH
Q 047445 18 SPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV-ITRLHAIVD 96 (436)
Q Consensus 18 ~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 96 (436)
..-.-|+.-+..|-++|.++ ||+|.+-+=... ...++...+| +.+..+.. .+... ...+.....
T Consensus 7 I~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~----~v~~LLd~yg--f~~~~Igk--------~g~~tl~~Kl~~~~e 71 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKK-GHEVLITCRDFG----VVTELLDLYG--FPYKSIGK--------HGGVTLKEKLLESAE 71 (346)
T ss_pred cCCcchhhHHHHHHHHHHhC-CeEEEEEEeecC----cHHHHHHHhC--CCeEeecc--------cCCccHHHHHHHHHH
Confidence 34445899999999999999 999988776541 2667777777 77666663 23222 335555555
Q ss_pred HhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecch
Q 047445 97 ESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 97 ~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
+.+. +.+++.+. +||+.+. -..+....+|-.+|+|.+.+.-+.
T Consensus 72 R~~~--L~ki~~~~-kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 72 RVYK--LSKIIAEF-KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHH--HHHHHhhc-CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 5544 77899999 9999999 667777799999999999886554
No 87
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.76 E-value=0.0016 Score=62.90 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=53.0
Q ss_pred CCcEEecccCCh-----hhhcCccCceeeeec----cCcccHHHHHHcCCcEeecc-ccccchhHHHHHHhhhcceeeec
Q 047445 344 GMGMVVPSWAPQ-----VEILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWP-LYAEQKMNAAMLTEETRGGRKAS 413 (436)
Q Consensus 344 ~~nv~v~~~~pq-----~~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P-~~~DQ~~nA~~v~~~~G~g~~~~ 413 (436)
..++.+.+|+++ .+.+..+|+ +|.. |--.++.||+++|+|+|+.- ..+ ....+.++ ..|.-..
T Consensus 235 ~~~v~f~G~~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~ 307 (359)
T PRK09922 235 EQRIIWHGWQSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYT 307 (359)
T ss_pred CCeEEEecccCCcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEEC
Confidence 347888898854 234666785 5542 33579999999999999876 433 22334442 2344445
Q ss_pred cccccccccccccccCCC
Q 047445 414 NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~ 431 (436)
..+.+++.+++.+...++
T Consensus 308 ~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 308 PGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CCCHHHHHHHHHHHHhCc
Confidence 567888888887775554
No 88
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.74 E-value=0.01 Score=57.04 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCcEEecccCChh---hhcCccCceeeeeccCc-----ccHHHHHHcCCcEeecccc
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFLSHCGW-----NSSLESICHGVPMIAWPLY 392 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I~HGG~-----~s~~eal~~GvP~l~~P~~ 392 (436)
.+++.+.+++++. +++..+++ ++-+.-. +++.||+++|+|+|+....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~ 301 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNP 301 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence 4589999999985 46777886 4443322 4789999999999987654
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.74 E-value=0.023 Score=59.25 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=50.8
Q ss_pred CCcEEecccCCh-hhhcCccCceeeee---ccC-cccHHHHHHcCCcEeeccccccchhHHHHHHh-hhcceeeeccccc
Q 047445 344 GMGMVVPSWAPQ-VEILRHSSTGGFLS---HCG-WNSSLESICHGVPMIAWPLYAEQKMNAAMLTE-ETRGGRKASNRIG 417 (436)
Q Consensus 344 ~~nv~v~~~~pq-~~lL~~~~v~~~I~---HGG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~-~~G~g~~~~~~~~ 417 (436)
.++|.+.+|.++ ..+|+.+|+ ||. +.| -+++.||+++|+|+|+....+ ....|.+ ..|+-+.....++
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~~ 646 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVTA 646 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCCh
Confidence 357888899876 578999996 553 445 568999999999999987532 3344544 3455555444444
Q ss_pred ccccccccc
Q 047445 418 KESDRTGRD 426 (436)
Q Consensus 418 ~~~~~~~~~ 426 (436)
+++.+++.+
T Consensus 647 ~~La~aL~~ 655 (694)
T PRK15179 647 PDVAEALAR 655 (694)
T ss_pred HHHHHHHHH
Confidence 455555443
No 90
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.72 E-value=0.013 Score=63.05 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=51.8
Q ss_pred CcEEecccCChhh---hcCcc----Cceeeeec---cC-cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeec
Q 047445 345 MGMVVPSWAPQVE---ILRHS----STGGFLSH---CG-WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKAS 413 (436)
Q Consensus 345 ~nv~v~~~~pq~~---lL~~~----~v~~~I~H---GG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~ 413 (436)
++|.+.+++++.+ ++..+ +| ||.- =| ..++.||+++|+|+|+-...+ ....+.. ..-|+-..
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~-g~nGlLVd 620 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRV-LDNGLLVD 620 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhcc-CCcEEEEC
Confidence 4688888888754 56655 44 6653 23 458999999999999987544 2223322 12344455
Q ss_pred cccccccccccccccCCC
Q 047445 414 NRIGKESDRTGRDREGSE 431 (436)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~ 431 (436)
..+++++.+++.+...++
T Consensus 621 P~D~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 621 PHDQQAIADALLKLVADK 638 (1050)
T ss_pred CCCHHHHHHHHHHHhhCH
Confidence 556788888887766543
No 91
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.72 E-value=0.014 Score=57.71 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=33.8
Q ss_pred EecccCChhhhcCccCceeeeec----cCcccHHHHHHcCCcEeecccc
Q 047445 348 VVPSWAPQVEILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLY 392 (436)
Q Consensus 348 ~v~~~~pq~~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~ 392 (436)
++..+.+..+++..+|| ||.- +=.+++.||+++|+|+|+.-..
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~ 333 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHP 333 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCC
Confidence 35566666789999995 8776 4467899999999999998653
No 92
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.71 E-value=0.0061 Score=59.40 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=45.7
Q ss_pred cEE-ecccCCh---hhhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 346 GMV-VPSWAPQ---VEILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 346 nv~-v~~~~pq---~~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
++. +..++++ ..++..+|+ +|.= |...++.||+++|+|+|+.... .....+.++ ..|.-....+.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCCCC
Confidence 344 3467775 357899996 5532 3345779999999999997643 344555442 23333333334
Q ss_pred ------ccccccccccc
Q 047445 418 ------KESDRTGRDRE 428 (436)
Q Consensus 418 ------~~~~~~~~~~~ 428 (436)
+++.+++.+..
T Consensus 334 ~~~~~~~~l~~~i~~l~ 350 (388)
T TIGR02149 334 DADGFQAELAKAINILL 350 (388)
T ss_pred cccchHHHHHHHHHHHH
Confidence 56666665543
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.71 E-value=0.0028 Score=60.80 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=70.3
Q ss_pred Ceeeec-cCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHh---C--CCcEEEEEeCCCCC
Q 047445 241 PIYPIG-PLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQ---S--KQRFIWVVRMPSDA 314 (436)
Q Consensus 241 ~v~~VG-pl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~ 314 (436)
++.||| |+...-.. ...+....+.+ -.+++++|.+=-||....=...+-.++++.+. . +.++++.......
T Consensus 154 ~~~~VGHPl~d~~~~-~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~- 230 (373)
T PF02684_consen 154 PVTYVGHPLLDEVKP-EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVH- 230 (373)
T ss_pred CeEEECCcchhhhcc-CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHH-
Confidence 699999 66554332 22334444444 22467899999999633222222334454433 2 3344444322110
Q ss_pred CcccccccCCCCCCCccCcCchhHHHhcCCCcEEec-ccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc-c
Q 047445 315 SASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVP-SWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL-Y 392 (436)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~-~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~-~ 392 (436)
...=....... ..++.+. -.-.-.++|..+|+ ++++-| +.|.|+...|+|||++=- .
T Consensus 231 -----------------~~~i~~~~~~~-~~~~~~~~~~~~~~~~m~~ad~-al~~SG--TaTLE~Al~g~P~Vv~Yk~~ 289 (373)
T PF02684_consen 231 -----------------EELIEEILAEY-PPDVSIVIIEGESYDAMAAADA-ALAASG--TATLEAALLGVPMVVAYKVS 289 (373)
T ss_pred -----------------HHHHHHHHHhh-CCCCeEEEcCCchHHHHHhCcc-hhhcCC--HHHHHHHHhCCCEEEEEcCc
Confidence 00000011111 1122221 11234678999996 444444 578999999999987643 3
Q ss_pred ccchhHHHHHHh
Q 047445 393 AEQKMNAAMLTE 404 (436)
Q Consensus 393 ~DQ~~nA~~v~~ 404 (436)
.=.+..|+++.+
T Consensus 290 ~lt~~iak~lvk 301 (373)
T PF02684_consen 290 PLTYFIAKRLVK 301 (373)
T ss_pred HHHHHHHHHhhc
Confidence 344555555543
No 94
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.68 E-value=0.0071 Score=60.95 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=71.4
Q ss_pred CCeeeec-cCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHH--hCCCcEEEEEeCCCCCCc
Q 047445 240 PPIYPIG-PLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLE--QSKQRFIWVVRMPSDASA 316 (436)
Q Consensus 240 p~v~~VG-pl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~--~~~~~~i~~~~~~~~~~~ 316 (436)
-++.||| |+..... .....++..+-+.-.+++++|-+=.||....=...+-.++++.+ ....+....+.....
T Consensus 381 v~v~yVGHPL~d~i~-~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~--- 456 (608)
T PRK01021 381 LRTVYLGHPLVETIS-SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP--- 456 (608)
T ss_pred CCeEEECCcHHhhcc-cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch---
Confidence 3699999 6665532 12234444555544456789999999964322333334566665 332233333322211
Q ss_pred ccccccCCCCCCCccCcCchhHHHhcCCC---cEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeecc-cc
Q 047445 317 SATFFNVGSDVNDPQAYLPEGFLQRTHGM---GMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWP-LY 392 (436)
Q Consensus 317 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~---nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P-~~ 392 (436)
...+.+.+..... .+.+..--...+++..||+ .+.-.| +.+.|+...|+|||++= ..
T Consensus 457 ----------------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s 517 (608)
T PRK01021 457 ----------------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLR 517 (608)
T ss_pred ----------------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecC
Confidence 0001111111111 1122110012589999995 555555 46899999999999853 22
Q ss_pred ccchhHHHHH
Q 047445 393 AEQKMNAAML 402 (436)
Q Consensus 393 ~DQ~~nA~~v 402 (436)
.=-+..|+++
T Consensus 518 ~Lty~Iak~L 527 (608)
T PRK01021 518 PFDTFLAKYI 527 (608)
T ss_pred HHHHHHHHHH
Confidence 2333444444
No 95
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.68 E-value=0.026 Score=59.21 Aligned_cols=130 Identities=13% Similarity=0.177 Sum_probs=70.5
Q ss_pred CEEEEEcCC-------------CCCCHHHHHHHHHH--------HHhcCCC----eEEEEEcCCCCchh-HHHHHhhcCC
Q 047445 11 PHVAVLASP-------------GLGHVVPLLEFAKR--------LVINHGV----HVRFLVITTNEASA-AQEKLLRSLP 64 (436)
Q Consensus 11 ~~il~~~~p-------------~~GH~~P~l~LA~~--------L~~r~Gh----~Vt~~~~~~~~~~~-~~~~~~~~~~ 64 (436)
+||++++.= +-|+..=.+.+|++ |+++ || +|+++|-..+.... .+....+...
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCCcccccccccccccc
Confidence 688887643 35777777888887 4677 99 77798865411100 0001111111
Q ss_pred --CCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCCcc--hHHHHHHHcCCCeEEE
Q 047445 65 --DGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKAVLIELC-NPRALVIDLFCT--QAFEICSQLSIPTYSF 139 (436)
Q Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~~~--~~~~~A~~~giP~v~~ 139 (436)
.+.....+|+.......-..+-....++..+........+.+..... +||+|++..... .+..+|+++|||.+.+
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 24666666643321100111112334455555444412233443433 799999876443 3557999999997765
Q ss_pred ec
Q 047445 140 VT 141 (436)
Q Consensus 140 ~~ 141 (436)
..
T Consensus 415 ~H 416 (784)
T TIGR02470 415 AH 416 (784)
T ss_pred CC
Confidence 43
No 96
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.60 E-value=0.0031 Score=61.90 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=53.4
Q ss_pred CCcEEecccCCh-hhhcCccCceeee--ec--cCcc-cHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 344 GMGMVVPSWAPQ-VEILRHSSTGGFL--SH--CGWN-SSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 344 ~~nv~v~~~~pq-~~lL~~~~v~~~I--~H--GG~~-s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
..++.+.+++++ ..+++.+|+ +| .+ .|.+ .+.||+++|+|+|+.+...+.- ... -|.|+-.. .++
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~-~~~ 349 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA-ADP 349 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC-CCH
Confidence 458888899986 578999997 44 22 4543 6999999999999998643321 112 23444444 568
Q ss_pred cccccccccccCC
Q 047445 418 KESDRTGRDREGS 430 (436)
Q Consensus 418 ~~~~~~~~~~~~~ 430 (436)
+++.+++.+...+
T Consensus 350 ~~la~ai~~ll~~ 362 (397)
T TIGR03087 350 ADFAAAILALLAN 362 (397)
T ss_pred HHHHHHHHHHHcC
Confidence 8888888776554
No 97
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.60 E-value=0.0056 Score=58.62 Aligned_cols=77 Identities=12% Similarity=0.009 Sum_probs=49.2
Q ss_pred CCcEEecccCChh---hhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccc
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRI 416 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~ 416 (436)
..++.+.+|+|+. ++|..+|+ ++.- |..+++.||+++|+|+|+....+ ....+.+ .|+.+.. .+
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~-~~~~~~~--~~ 322 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD-AALYFDP--LD 322 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC-ceeeeCC--CC
Confidence 4589999999875 57889996 3322 33568999999999999965422 1112222 3444433 35
Q ss_pred ccccccccccccC
Q 047445 417 GKESDRTGRDREG 429 (436)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (436)
.+++.+++.+...
T Consensus 323 ~~~~~~~i~~l~~ 335 (365)
T cd03809 323 PEALAAAIERLLE 335 (365)
T ss_pred HHHHHHHHHHHhc
Confidence 6677777666543
No 98
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=0.0084 Score=56.71 Aligned_cols=318 Identities=14% Similarity=0.126 Sum_probs=166.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHG-VHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~G-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
-+++-++++=.+.-+..|.+++.+. + .+..++.+...........+.+..+ +.. |+++..-+ .++. .+
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~-~~~~~~vi~TGQH~d~em~~~~le~~~--i~~---pdy~L~i~-~~~~----tl 73 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKD-PDFELIVIHTGQHRDYEMLDQVLELFG--IRK---PDYDLNIM-KPGQ----TL 73 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhC-CCCceEEEEecccccHHHHHHHHHHhC--CCC---CCcchhcc-ccCC----CH
Confidence 3445567788899999999999998 6 7888887777232233334444433 221 22222222 1222 24
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEE--cCCc-chHHHHHHHcCCCeEEEecchHHHHHHHhhhccchhcccCCCCCCC
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVI--DLFC-TQAFEICSQLSIPTYSFVTTSIHFFAFALYLPTLDREVQGEFFDLP 168 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~--D~~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (436)
.......+. .+.+++++. +||+|++ |..+ .+++.+|-+.+||+.-+-...
T Consensus 74 ~~~t~~~i~-~~~~vl~~~-kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl------------------------- 126 (383)
T COG0381 74 GEITGNIIE-GLSKVLEEE-KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL------------------------- 126 (383)
T ss_pred HHHHHHHHH-HHHHHHHhh-CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc-------------------------
Confidence 455555666 788899998 9999985 4443 455789999999987653321
Q ss_pred CccccCCCCCCCccccchhhhccCchHHHHHHHHhhccCCccEEEEcChhhcCchHHHHHHhccccCCCCCC-C-eeeec
Q 047445 169 EPIEIPGCPPVRPEDLLDQVRNRKIDEYNLFLLHISRLPLAAGIFLNPWENLELVPLRAIREHSFYLQIPTP-P-IYPIG 246 (436)
Q Consensus 169 ~~~~~p~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~-v~~VG 246 (436)
...... +|.-+ .+.+...... .-+.++ +. ..-+.++.. .+ . ++.+|
T Consensus 127 --------Rt~~~~-~PEE~-------NR~l~~~~S~-----~hfapt--e~--ar~nLl~EG-------~~~~~IfvtG 174 (383)
T COG0381 127 --------RTGDLY-FPEEI-------NRRLTSHLSD-----LHFAPT--EI--ARKNLLREG-------VPEKRIFVTG 174 (383)
T ss_pred --------ccCCCC-CcHHH-------HHHHHHHhhh-----hhcCCh--HH--HHHHHHHcC-------CCccceEEeC
Confidence 111000 11110 0000000000 000011 00 001112221 22 2 67777
Q ss_pred cCccCCCC----CCCChhHHhhh-hcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHh---CCCcEEEEEeCCCCCCccc
Q 047445 247 PLIKQDET----LSASDEECLAW-LGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQ---SKQRFIWVVRMPSDASASA 318 (436)
Q Consensus 247 pl~~~~~~----~~~~~~~l~~~-l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~ 318 (436)
-...+--. ....+.....- +.. +.+..|++|+=-..+.. +-++.|++++.+ ....+..++..+..
T Consensus 175 nt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~----- 247 (383)
T COG0381 175 NTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR----- 247 (383)
T ss_pred ChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC-----
Confidence 53321100 00111122211 222 24568898875544444 445556655443 22355556654432
Q ss_pred ccccCCCCCCCccCcCchhHHHhcCCC-cEEec---ccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeecccccc
Q 047445 319 TFFNVGSDVNDPQAYLPEGFLQRTHGM-GMVVP---SWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAE 394 (436)
Q Consensus 319 ~~~~~~~~~~~~~~~lp~~~~~~~~~~-nv~v~---~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~D 394 (436)
..+-+-...+.+.. ++.+. +|.+...++++|- +++|-.|. -.-||-..|+|++++=..-+
T Consensus 248 -------------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~Pvl~lR~~TE 311 (383)
T COG0381 248 -------------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGKPVLVLRDTTE 311 (383)
T ss_pred -------------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCCcEEeeccCCC
Confidence 11111112333332 56654 4567788999998 68888873 56789999999999999999
Q ss_pred chhHHHHHHhhhcceeeeccccccccccccccccC
Q 047445 395 QKMNAAMLTEETRGGRKASNRIGKESDRTGRDREG 429 (436)
Q Consensus 395 Q~~nA~~v~~~~G~g~~~~~~~~~~~~~~~~~~~~ 429 (436)
||. ++ + .|.-+... .+.+.+-+++...++
T Consensus 312 RPE---~v-~-agt~~lvg-~~~~~i~~~~~~ll~ 340 (383)
T COG0381 312 RPE---GV-E-AGTNILVG-TDEENILDAATELLE 340 (383)
T ss_pred Ccc---ce-e-cCceEEeC-ccHHHHHHHHHHHhh
Confidence 998 34 3 45444443 334666666655544
No 99
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.48 E-value=0.013 Score=51.77 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=36.3
Q ss_pred CcEEecccCCh----hhhcCccCceeeeeccC----cccHHHHHHcCCcEeeccccccc
Q 047445 345 MGMVVPSWAPQ----VEILRHSSTGGFLSHCG----WNSSLESICHGVPMIAWPLYAEQ 395 (436)
Q Consensus 345 ~nv~v~~~~pq----~~lL~~~~v~~~I~HGG----~~s~~eal~~GvP~l~~P~~~DQ 395 (436)
.|+.+.+++++ ..++..+|+ +++-.. .+++.||+++|+|+|+.+..+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 47888788632 235555895 666665 68999999999999998875543
No 100
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.38 E-value=0.0091 Score=56.93 Aligned_cols=44 Identities=18% Similarity=0.133 Sum_probs=38.1
Q ss_pred hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc--cccchhHHHHHH
Q 047445 356 VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL--YAEQKMNAAMLT 403 (436)
Q Consensus 356 ~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~--~~DQ~~nA~~v~ 403 (436)
.+++..|| ++|+-.|..|+ |+..+|+|||+ +. ..=|+.||+++.
T Consensus 230 ~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv 275 (347)
T PRK14089 230 HKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFV 275 (347)
T ss_pred HHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHH
Confidence 57999999 59999999888 99999999998 43 446899999986
No 101
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.26 E-value=0.00021 Score=54.31 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=51.1
Q ss_pred ChhHHhhhhcCCCCCeEEEEecCCCCCC---CH--HHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccC
Q 047445 258 SDEECLAWLGKQPSDSVIFVAPGSGGTL---TA--EQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQA 332 (436)
Q Consensus 258 ~~~~l~~~l~~~~~~~vV~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (436)
.+..+.+|+...+.++.|+||+||.... .. ..+..++++++.++..++..+...+. ...+
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~---------------~~lg 90 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR---------------AELG 90 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC---------------GGCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH---------------HhhC
Confidence 4467888999988999999999998542 22 47889999999999999999987654 4557
Q ss_pred cCch
Q 047445 333 YLPE 336 (436)
Q Consensus 333 ~lp~ 336 (436)
.+|+
T Consensus 91 ~lP~ 94 (97)
T PF06722_consen 91 ELPD 94 (97)
T ss_dssp S-TT
T ss_pred CCCC
Confidence 7888
No 102
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.0044 Score=58.42 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=65.9
Q ss_pred Ceeeec-cCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhC-----CCcEEEEEeCCCCC
Q 047445 241 PIYPIG-PLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQS-----KQRFIWVVRMPSDA 314 (436)
Q Consensus 241 ~v~~VG-pl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~ 314 (436)
+..||| |+....+ -.+..+...+-+.-..+.+++.+-.||..+.=...+..+.++..++ +.+|+.-+.....
T Consensus 157 ~~~yVGHpl~d~i~-~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~- 234 (381)
T COG0763 157 PCTYVGHPLADEIP-LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY- 234 (381)
T ss_pred CeEEeCChhhhhcc-ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH-
Confidence 389999 5544432 2334455666665555778999999997442233333344444433 3456555433211
Q ss_pred CcccccccCCCCCCCccCcCchhHHHhcCCCcE-EecccC-Ch--hhhcCccCceeeeeccCcccHHHHHHcCCcEeec
Q 047445 315 SASATFFNVGSDVNDPQAYLPEGFLQRTHGMGM-VVPSWA-PQ--VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAW 389 (436)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv-~v~~~~-pq--~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~ 389 (436)
+.........+. ...-++ ++ .+.+..||+ .+.-+| +-+.|+..+|+|||+.
T Consensus 235 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 235 ---------------------RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASG-TATLEAALAGTPMVVA 289 (381)
T ss_pred ---------------------HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEE
Confidence 111111111111 111222 22 357888995 444444 4678999999999985
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.21 E-value=0.048 Score=54.75 Aligned_cols=38 Identities=24% Similarity=0.119 Sum_probs=31.0
Q ss_pred CEEEEEcCC------CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASP------GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p------~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|||++++.- .-|.-.-.-.|+++|+++ ||+|+++++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~-G~~V~v~~p~y 44 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAAL-GHDVRVLLPGY 44 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 678888853 346667778999999999 99999999865
No 104
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.16 E-value=0.0013 Score=64.36 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHH-HhcCCCcEE
Q 047445 270 PSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFL-QRTHGMGMV 348 (436)
Q Consensus 270 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~~~nv~ 348 (436)
|++.++|.||.+...++++.+..-.+-|++.+.-.+|....+.. ....+-..+. .....+.+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~----------------~~~~l~~~~~~~Gv~~~Ri~ 345 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS----------------GEARLRRRFAAHGVDPDRII 345 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT----------------HHHHHHHHHHHTTS-GGGEE
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH----------------HHHHHHHHHHHcCCChhhEE
Confidence 46679999999999999999999999999999999999876432 1011111111 112233677
Q ss_pred ecccCChh---hhcCccCceee--eeccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcce
Q 047445 349 VPSWAPQV---EILRHSSTGGF--LSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGG 409 (436)
Q Consensus 349 v~~~~pq~---~lL~~~~v~~~--I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g 409 (436)
+.++.++. ..+..+|| +. ...+|.+|++|||+.|||+|.+|--.=.-..++-+-..+|+.
T Consensus 346 f~~~~~~~ehl~~~~~~DI-~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ 410 (468)
T PF13844_consen 346 FSPVAPREEHLRRYQLADI-CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLP 410 (468)
T ss_dssp EEE---HHHHHHHGGG-SE-EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-G
T ss_pred EcCCCCHHHHHHHhhhCCE-EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCc
Confidence 77777754 35566886 22 345899999999999999999995332333333332335554
No 105
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0019 Score=51.07 Aligned_cols=52 Identities=23% Similarity=0.155 Sum_probs=39.9
Q ss_pred hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccc--------cchhHHHHHHhhhccee
Q 047445 356 VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYA--------EQKMNAAMLTEETRGGR 410 (436)
Q Consensus 356 ~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~--------DQ~~nA~~v~~~~G~g~ 410 (436)
..+...++ .+|+|+|.||+..++..++|.|++|=.. .|-..|..+++ .+.-+
T Consensus 60 Qsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv 119 (161)
T COG5017 60 QSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVV 119 (161)
T ss_pred HHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceE
Confidence 45666777 4999999999999999999999999422 36666777766 44333
No 106
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.12 E-value=0.031 Score=54.97 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=30.5
Q ss_pred CEEEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||||.+-. ...|-=.-++.|++.|.++ ||+|.++....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~-G~~~~i~~~~~ 40 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQ-GLASHFVYGYG 40 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhc-CCeEEEEEecC
Confidence 56776653 4556667789999999999 99999999876
No 107
>PLN00142 sucrose synthase
Probab=97.10 E-value=0.049 Score=57.31 Aligned_cols=111 Identities=11% Similarity=0.176 Sum_probs=57.7
Q ss_pred HHHHHHhcCCCeEE----EEEcCCCCc-hhHHHHHhhcCC--CCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHH
Q 047445 30 FAKRLVINHGVHVR----FLVITTNEA-SAAQEKLLRSLP--DGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSS 102 (436)
Q Consensus 30 LA~~L~~r~Gh~Vt----~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (436)
|+++|+++ ||+|+ ++|=-.+.. ...+....+... .+.....+|.-...+..+. +-....++..+.......
T Consensus 320 l~~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~-~i~ke~l~p~L~~f~~~~ 397 (815)
T PLN00142 320 MLLRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRK-WISRFDVWPYLETFAEDA 397 (815)
T ss_pred HHHHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCcccccc-ccCHHHHHHHHHHHHHHH
Confidence 55788898 99875 666433100 001111111111 1355555554332111111 112334455555444412
Q ss_pred HHHHHHhcC-CCcEEEEcCCcc--hHHHHHHHcCCCeEEEecc
Q 047445 103 LKAVLIELC-NPRALVIDLFCT--QAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 103 l~~ll~~~~-~pD~vI~D~~~~--~~~~~A~~~giP~v~~~~~ 142 (436)
.+.+.+... +||+|.+..... .|..+|+++|||.|.+..+
T Consensus 398 ~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 398 ASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred HHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 334434443 799999886444 4557999999999876554
No 108
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.06 E-value=0.043 Score=52.07 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCce-EEecCCCCCCCCCCCCchHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLD-VVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|||++-....|++.-+..+.++|+++. +.+|++++.+. .+.+++..+ .++ ++.++...... ..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~------~~~~~~~~p-~vd~v~~~~~~~~~~----~~---- 65 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEG------FADIVRLHP-AVDEVIPVALRRWRK----TL---- 65 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChh------HhhhhhcCC-CccEEEEechhhhhh----cc----
Confidence 589999999999999999999999986 89999999998 778887766 553 44444211000 00
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTY 137 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v 137 (436)
+......... .+...+++. ++|++|.-........++...+.+.+
T Consensus 66 -~~~~~~~~~~-~~~~~lr~~-~yD~vi~~~~~~~s~~l~~~~~~~r~ 110 (319)
T TIGR02193 66 -FSAATWREIK-ALRALLRAE-RYDAVIDAQGLIKSALVARMARGPRH 110 (319)
T ss_pred -ccchhHHHHH-HHHHHHhhc-cchhhhhhhhhHHHHHHHHhhCCcee
Confidence 0000011122 344455666 99998854433444456666664433
No 109
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.02 E-value=0.11 Score=52.30 Aligned_cols=80 Identities=10% Similarity=-0.066 Sum_probs=45.1
Q ss_pred CcEEec-ccCCh--hhhcCccCceeeeec---cCc-ccHHHHHHcCCcEeeccccc--cchhHHHHHHhhhcceeeeccc
Q 047445 345 MGMVVP-SWAPQ--VEILRHSSTGGFLSH---CGW-NSSLESICHGVPMIAWPLYA--EQKMNAAMLTEETRGGRKASNR 415 (436)
Q Consensus 345 ~nv~v~-~~~pq--~~lL~~~~v~~~I~H---GG~-~s~~eal~~GvP~l~~P~~~--DQ~~nA~~v~~~~G~g~~~~~~ 415 (436)
.|+.+. .+... ..+++.+|+ ++.- -|+ .+.+||+++|+|+|+....+ |.-.+...- .+-|.|+-....
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~~ 427 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEGY 427 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCCC
Confidence 466543 44322 257889996 4432 222 47799999999999876543 211111100 012455655555
Q ss_pred cccccccccccc
Q 047445 416 IGKESDRTGRDR 427 (436)
Q Consensus 416 ~~~~~~~~~~~~ 427 (436)
+++++.+++.++
T Consensus 428 ~~~~l~~~i~~~ 439 (476)
T cd03791 428 NADALLAALRRA 439 (476)
T ss_pred CHHHHHHHHHHH
Confidence 677777777654
No 110
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.95 E-value=0.3 Score=47.28 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=28.0
Q ss_pred EEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|+++.. .+-|=..-...+++.|.+. ||+|+++++..
T Consensus 2 i~~~~~~~~~GGv~~~~~~l~~~l~~~-g~~v~~~~~~~ 39 (372)
T cd03792 2 VLHVNSTPYGGGVAEILHSLVPLMRDL-GVDTRWEVIKG 39 (372)
T ss_pred eEEEeCCCCCCcHHHHHHHHHHHHHHc-CCCceEEecCC
Confidence 455543 4556777777999999998 99999998765
No 111
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.88 E-value=0.4 Score=46.18 Aligned_cols=108 Identities=11% Similarity=0.028 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCce-EEecCCCCCCCCCCCCch
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLD-VVDLPPVDVSAVTRDDMP 86 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 86 (436)
..+|||++-....|++.-...+.++|+++. +.+|++++.+. ...+++..+ .++ ++.++.. . ..
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~------~~~l~~~~P-~id~vi~~~~~-------~-~~ 68 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQD------TIPILSENP-EINALYGIKNK-------K-AG 68 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccC------hHHHhccCC-CceEEEEeccc-------c-cc
Confidence 457899999999999999999999999986 78999999998 777777765 443 2333311 0 00
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 047445 87 VITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYS 138 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 138 (436)
....+ . ..- .+...+++. ++|++|.=........++...|.+..+
T Consensus 69 ~~~~~----~-~~~-~l~~~lr~~-~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 69 ASEKI----K-NFF-SLIKVLRAN-KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHH----H-HHH-HHHHHHhhC-CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00111 1 111 223345555 999999654444445677777877644
No 112
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=96.84 E-value=0.46 Score=46.97 Aligned_cols=78 Identities=17% Similarity=-0.043 Sum_probs=49.8
Q ss_pred CcEEecccCChh---hhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHH---hhhcceeeecc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLT---EETRGGRKASN 414 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~---~~~G~g~~~~~ 414 (436)
++|.+..++|+. .+|..+++ +|+- +=..++.||+++|+|+|+.-..+.-. ..+. + -..|+-..
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~-g~~G~l~~- 377 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIVVPWDG-GPTGFLAS- 377 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---heeeccCC-CCceEEeC-
Confidence 478888999864 58889995 5531 12248899999999999866433211 1122 2 12333332
Q ss_pred ccccccccccccccCC
Q 047445 415 RIGKESDRTGRDREGS 430 (436)
Q Consensus 415 ~~~~~~~~~~~~~~~~ 430 (436)
+++++.+++.+...+
T Consensus 378 -d~~~la~ai~~ll~~ 392 (419)
T cd03806 378 -TAEEYAEAIEKILSL 392 (419)
T ss_pred -CHHHHHHHHHHHHhC
Confidence 688888888776653
No 113
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.63 E-value=0.25 Score=47.46 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=70.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCceEE-ecCCCCCCCCCCCCchHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLDVV-DLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 88 (436)
||||++-..+.|++.-...+.+.|+++. +.+|++++.+. .+.+++..+ .++-+ .++. ....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~------~~~l~~~~P-~vd~vi~~~~-------~~~~--- 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW------CRPLLSRMP-EVNEAIPMPL-------GHGA--- 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh------hHHHHhcCC-ccCEEEeccc-------ccch---
Confidence 5899999999999999999999999975 79999999988 888888766 44322 2221 0000
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYS 138 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 138 (436)
..+ . ... .+...+++. ++|++|.=....-...++...|+|.-.
T Consensus 64 ~~~----~-~~~-~l~~~lr~~-~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 LEI----G-ERR-RLGHSLREK-RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hhh----H-HHH-HHHHHHHhc-CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 0 111 233345555 999998655455555777777887543
No 114
>PLN02949 transferase, transferring glycosyl groups
Probab=96.50 E-value=1.1 Score=44.93 Aligned_cols=128 Identities=9% Similarity=0.076 Sum_probs=66.3
Q ss_pred CCCEEEEEcCC---CCCCHHHHHHHHHHHHhcCCC--eEEEEEcCCCCchhH-HHHHhhcCC----CCceEEecCCCCCC
Q 047445 9 SRPHVAVLASP---GLGHVVPLLEFAKRLVINHGV--HVRFLVITTNEASAA-QEKLLRSLP----DGLDVVDLPPVDVS 78 (436)
Q Consensus 9 ~~~~il~~~~p---~~GH~~P~l~LA~~L~~r~Gh--~Vt~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~ 78 (436)
++++|.|+-.- +.|==.-+...+++|+++ || +|++.|+..+..... ..+..+..+ ....|+.+.. .
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~-~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~---~ 107 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEE-NPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRK---R 107 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhh-CCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecc---c
Confidence 44566665432 335557788888999998 98 888888653222111 011122222 1123333311 0
Q ss_pred CCCCC-CchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc-hHHHHHHHcCCCeEEEecchH
Q 047445 79 AVTRD-DMPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT-QAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v~~~~~~~ 144 (436)
.+++. .......++..+....- .++.+.+ . .| .|+.|...+ .+..+++.+++|.+.++..+.
T Consensus 108 ~~~~~~~~~~~t~~~~~~~~~~l-~~~~~~~-~-~p-~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~ 171 (463)
T PLN02949 108 KWIEEETYPRFTMIGQSLGSVYL-AWEALCK-F-TP-LYFFDTSGYAFTYPLARLFGCKVVCYTHYPT 171 (463)
T ss_pred cccccccCCceehHHHHHHHHHH-HHHHHHh-c-CC-CEEEeCCCcccHHHHHHhcCCcEEEEEeCCc
Confidence 11121 12233334444443433 3333332 4 55 488887663 455677877999998887653
No 115
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.36 E-value=0.61 Score=44.70 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCce-EEecCCCCCCCCCCCCchHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLD-VVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|||++-..+.|++.-+..+.++|+++. +.+|++++.+. ...+++..+ .++ ++.++.... . ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~------~~~l~~~~p-~vd~vi~~~~~~~----~---~~~~ 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQE------TIPILSENP-DINALYGLDRKKA----K---AGER 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcC------hHHHHhcCC-CccEEEEeChhhh----c---chHH
Confidence 589999999999999999999999976 78999999998 778888766 443 344331110 0 0000
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYS 138 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 138 (436)
.+.. .. .+...+++. ++|++|.=........++...|.|.-+
T Consensus 67 ~~~~----~~--~l~~~lr~~-~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 KLAN----QF--HLIKVLRAN-RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHH----HH--HHHHHHHhC-CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 1111 11 122345555 999999655455566788888988654
No 116
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.34 E-value=0.98 Score=43.83 Aligned_cols=75 Identities=15% Similarity=-0.017 Sum_probs=48.1
Q ss_pred CCcEEecccCChh---hhcCccCceeeee-------ccCc-ccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeee
Q 047445 344 GMGMVVPSWAPQV---EILRHSSTGGFLS-------HCGW-NSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKA 412 (436)
Q Consensus 344 ~~nv~v~~~~pq~---~lL~~~~v~~~I~-------HGG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~ 412 (436)
..||.+.+++|+. .+|+++|+ +++. .++. +.+.|++++|+|+|+.++ ...+..+-|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv-~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~~~~~~~- 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDV-AILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYEDEVVLI- 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCE-EecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhcCcEEEe-
Confidence 3589999999865 47889997 3332 2332 358999999999998763 1222222122222
Q ss_pred cccccccccccccccc
Q 047445 413 SNRIGKESDRTGRDRE 428 (436)
Q Consensus 413 ~~~~~~~~~~~~~~~~ 428 (436)
..+.+++.+++.++.
T Consensus 324 -~~d~~~~~~ai~~~l 338 (373)
T cd04950 324 -ADDPEEFVAAIEKAL 338 (373)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 236788888887753
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.05 E-value=0.1 Score=50.48 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=52.4
Q ss_pred CcEEecccCCh-hhhcCccCceeeeec--cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLSH--CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKESD 421 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~H--GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~ 421 (436)
.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+.....- ....+.+ -..|.-....+.+++.
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v~~-~~~G~lv~~~d~~~la 336 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEIIED-GENGYLVPKGDIEALA 336 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHccc-CCCceEeCCCcHHHHH
Confidence 36778777765 578999997334443 335689999999999999654321 2233433 1344444445577777
Q ss_pred cccccccCC
Q 047445 422 RTGRDREGS 430 (436)
Q Consensus 422 ~~~~~~~~~ 430 (436)
+++.....+
T Consensus 337 ~~i~~ll~~ 345 (372)
T cd04949 337 EAIIELLND 345 (372)
T ss_pred HHHHHHHcC
Confidence 777666544
No 118
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.03 E-value=0.097 Score=42.66 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=64.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
+||+++.....| ...+++.|.++ ||+|++++.... ........ ++.+..++.. . .. ....+
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~-----~~~~~~~~--~i~~~~~~~~----~-k~---~~~~~ 61 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRND-----YEKYEIIE--GIKVIRLPSP----R-KS---PLNYI 61 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCC-----chhhhHhC--CeEEEEecCC----C-Cc---cHHHH
Confidence 477777766656 45779999999 999999999661 12222222 4777776422 1 11 11111
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch---HHHHHHHcC-CCeEEEec
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ---AFEICSQLS-IPTYSFVT 141 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~---~~~~A~~~g-iP~v~~~~ 141 (436)
. .- .+++++++. +||+|.+-..... +..++...+ +|.+....
T Consensus 62 ----~--~~-~l~k~ik~~-~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 62 ----K--YF-RLRKIIKKE-KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred ----H--HH-HHHHHhccC-CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 22 466788888 9999987765432 334667788 88875443
No 119
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.88 E-value=0.4 Score=45.49 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=43.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCce
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLD 68 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (436)
||||++-..+.|++.-...+.+.|+++. +.+|++++.+. .+.+.+..+ .++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~------~~~l~~~~p-~vd 52 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEG------FAQIPSWHP-AVD 52 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHH------HHHHHhcCC-Ccc
Confidence 5899999999999999999999999975 79999999988 777777655 443
No 120
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.058 Score=53.39 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=75.8
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHH---Hh--cCC
Q 047445 270 PSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFL---QR--THG 344 (436)
Q Consensus 270 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~--~~~ 344 (436)
|++-+||+||+......++.+..=.+-|+..+--++|..+++.. ...-..+. ++ ...
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~------------------~~~~~~l~~la~~~Gv~~ 488 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD------------------AEINARLRDLAEREGVDS 488 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc------------------HHHHHHHHHHHHHcCCCh
Confidence 56779999999999999999988888888888899999887532 11111121 11 223
Q ss_pred CcEEecccCC---hhhhcCccCceeee---eccCcccHHHHHHcCCcEeeccccccch
Q 047445 345 MGMVVPSWAP---QVEILRHSSTGGFL---SHCGWNSSLESICHGVPMIAWPLYAEQK 396 (436)
Q Consensus 345 ~nv~v~~~~p---q~~lL~~~~v~~~I---~HGG~~s~~eal~~GvP~l~~P~~~DQ~ 396 (436)
..+++.+-.| +.+-++.+|+ |. --||+.|+.|+|..|||||.++ ++|+
T Consensus 489 eRL~f~p~~~~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 489 ERLRFLPPAPNEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred hheeecCCCCCHHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 3556655555 3466777884 54 3699999999999999999998 6665
No 121
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.80 E-value=1.8 Score=41.18 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=69.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCce-EEecCCCCCCCCCCCCchHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLD-VVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|||++-..+.|++.-...+.++|++.. +.+|++++.+. .+.+++..+ .++ ++.++. .... .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~------~~~l~~~~p-~id~v~~~~~-------~~~~---~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAW------CRPLLERMP-EIRQAIDMPL-------GHGA---L 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechh------hHHHHhcCc-hhceeeecCC-------cccc---h
Confidence 589999999999999999999999976 78999999887 777777765 332 222221 0000 0
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTY 137 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v 137 (436)
.+. ... .+...+++. ++|++|.-........++...|+|.-
T Consensus 64 ~~~-----~~~-~~~~~lr~~-~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 64 ELT-----ERR-RLGRSLREE-RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred hhh-----HHH-HHHHHHhhc-CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 010 111 233455555 99999986655556667777788754
No 122
>PLN02501 digalactosyldiacylglycerol synthase
Probab=95.78 E-value=0.42 Score=49.34 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=34.7
Q ss_pred cEEecccCChh-hhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccc
Q 047445 346 GMVVPSWAPQV-EILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYA 393 (436)
Q Consensus 346 nv~v~~~~pq~-~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~ 393 (436)
++.+.++.++. ++++.+|| ||.- |=.+++.||+++|+|+|+.-..+
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG 652 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPS 652 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCC
Confidence 45566777764 59999995 6652 33568999999999999987654
No 123
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.67 E-value=0.015 Score=55.90 Aligned_cols=126 Identities=10% Similarity=0.093 Sum_probs=76.9
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCCh
Q 047445 276 FVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQ 355 (436)
Q Consensus 276 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq 355 (436)
++..|+.. ..+.+..+++++++.+.+++++-.+... +.+.+ ....||.+.+|+|+
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~~----------------------~~l~~-~~~~~V~~~g~~~~ 252 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPEL----------------------DRLRA-KAGPNVTFLGRVSD 252 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChhH----------------------HHHHh-hcCCCEEEecCCCH
Confidence 44556653 2344667788888887776655433211 12222 23458999999997
Q ss_pred h---hhcCccCceeeeeccCc-ccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccccccccccccccCCC
Q 047445 356 V---EILRHSSTGGFLSHCGW-NSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKESDRTGRDREGSE 431 (436)
Q Consensus 356 ~---~lL~~~~v~~~I~HGG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~~~~~~~~~~~~ 431 (436)
. ++|+.+|+-++-+.-|+ .++.||+++|+|+|+....+ ....+.+ -..|+-....+++++.+++....+++
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 4 57889996222223333 46789999999999987543 2233433 13455555556777888887766554
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=95.59 E-value=0.0065 Score=49.40 Aligned_cols=77 Identities=21% Similarity=0.143 Sum_probs=44.5
Q ss_pred CcEEecccCCh-hhhcCccCceeeeec--cC-cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccccccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLSH--CG-WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGKES 420 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~H--GG-~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~~~ 420 (436)
.|+.+.+|++. .++++.+++.+..+. -| -+++.|++++|+|+|+.+.. ....+++ .+.+.-. .-+++++
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~-~~~~~~l 125 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLV-ANDPEEL 125 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--TT-HHHH
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEE-CCCHHHH
Confidence 38999899974 578999998554332 23 48999999999999998761 1112222 3555555 5577888
Q ss_pred cccccccc
Q 047445 421 DRTGRDRE 428 (436)
Q Consensus 421 ~~~~~~~~ 428 (436)
.+++.+..
T Consensus 126 ~~~i~~l~ 133 (135)
T PF13692_consen 126 AEAIERLL 133 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776543
No 125
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.49 E-value=1 Score=45.40 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=53.7
Q ss_pred CcEEecccCChhhhcCccCceeeeec---cCcccHHHHHHcCCcEeeccccccchhHHHHHHhh----h-cceeeecccc
Q 047445 345 MGMVVPSWAPQVEILRHSSTGGFLSH---CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEE----T-RGGRKASNRI 416 (436)
Q Consensus 345 ~nv~v~~~~pq~~lL~~~~v~~~I~H---GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~----~-G~g~~~~~~~ 416 (436)
++|.+.+...-.++|+.+|+ .+.+. |--+++.||+++|+|+|+-.. ......+.+. + ..|+-....+
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv-~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~~d 428 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV-LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPPAD 428 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE-EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECCCC
Confidence 57888785556789999996 33232 445689999999999999543 3334444321 1 1455555666
Q ss_pred ccccccccccccCC
Q 047445 417 GKESDRTGRDREGS 430 (436)
Q Consensus 417 ~~~~~~~~~~~~~~ 430 (436)
++++.+++.+..++
T Consensus 429 ~~~la~ai~~ll~~ 442 (475)
T cd03813 429 PEALARAILRLLKD 442 (475)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888776554
No 126
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.46 E-value=0.025 Score=46.97 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHH--hhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHH
Q 047445 25 VPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKL--LRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSS 102 (436)
Q Consensus 25 ~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (436)
.-+..|+++|.++ ||+|+++++.. .... .... ++.+..++....... ..... ... .
T Consensus 5 ~~~~~l~~~L~~~-G~~V~v~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~-----------~~~-~ 62 (160)
T PF13579_consen 5 RYVRELARALAAR-GHEVTVVTPQP------DPEDDEEEED--GVRVHRLPLPRRPWP-LRLLR-----------FLR-R 62 (160)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE---------GGG-SEEET--TEEEEEE--S-SSSG-GGHCC-----------HHH-H
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCC------CCcccccccC--CceEEeccCCccchh-hhhHH-----------HHH-H
Confidence 3467899999999 99999999876 2221 1222 477776664322111 00001 112 3
Q ss_pred HHHHH--HhcCCCcEEEEcCCcc-hHHHHHH-HcCCCeEEEec
Q 047445 103 LKAVL--IELCNPRALVIDLFCT-QAFEICS-QLSIPTYSFVT 141 (436)
Q Consensus 103 l~~ll--~~~~~pD~vI~D~~~~-~~~~~A~-~~giP~v~~~~ 141 (436)
+++++ +.. +||+|.+..... ....++. ..++|+|....
T Consensus 63 ~~~~l~~~~~-~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 63 LRRLLAARRE-RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHCHHCT----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHhhhcc-CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 44555 444 999999876332 2234555 78999987654
No 127
>PLN02316 synthase/transferase
Probab=95.35 E-value=5.5 Score=43.63 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=32.2
Q ss_pred CCCCEEEEEcC---C---CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLAS---P---GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~---p---~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..+||||+++. | .-|=-.-...|+++|+++ ||+|.++++..
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~-Gh~V~VitP~Y 631 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDL-NHNVDIILPKY 631 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHc-CCEEEEEecCC
Confidence 35699999985 3 224445567899999999 99999999976
No 128
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=95.21 E-value=0.018 Score=48.95 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=54.5
Q ss_pred CcEEecccCC--h-hhhcCccCceeeeec----cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeeccccc
Q 047445 345 MGMVVPSWAP--Q-VEILRHSSTGGFLSH----CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIG 417 (436)
Q Consensus 345 ~nv~v~~~~p--q-~~lL~~~~v~~~I~H----GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~ 417 (436)
.++.+..+++ + ..++..+++ +|+. |..+++.||+++|+|+|+.- ...+...+.+ .+.|+-....+.
T Consensus 73 ~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~-~~~g~~~~~~~~ 145 (172)
T PF00534_consen 73 ENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIIND-GVNGFLFDPNDI 145 (172)
T ss_dssp TTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGT-TTSEEEESTTSH
T ss_pred cccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeecc-ccceEEeCCCCH
Confidence 4788888888 3 578889995 6665 56679999999999999744 4555555544 345666666678
Q ss_pred cccccccccccC
Q 047445 418 KESDRTGRDREG 429 (436)
Q Consensus 418 ~~~~~~~~~~~~ 429 (436)
+++.+++..+..
T Consensus 146 ~~l~~~i~~~l~ 157 (172)
T PF00534_consen 146 EELADAIEKLLN 157 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
Confidence 888887766543
No 129
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.18 E-value=2.6 Score=38.95 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCce-EEecCCCCCCCCCCCCchHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLD-VVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|||++-..+.|++.-+..+.++|+++. +-+|++++.+. ...+.+..+ .++ +..++... . .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~------~~~l~~~~p-~id~v~~~~~~~---~----~~~~~ 66 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPW------FAPLLELMP-EVDRVIVLPKKH---G----KLGLG 66 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChh------hHHHHhcCC-ccCEEEEcCCcc---c----ccchH
Confidence 589999999999999999999999983 38999999998 777777765 343 33333111 0 00000
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTY 137 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v 137 (436)
... .+...+++. ++|+++.=........++...+++..
T Consensus 67 --------~~~-~~~~~l~~~-~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 67 --------ARR-RLARALRRR-RYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred --------HHH-HHHHHHhhc-CCCEEEECCCccHHHHHHHHhCCCeE
Confidence 111 122233444 89999976555544445555565543
No 130
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.11 E-value=2.8 Score=39.50 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=35.5
Q ss_pred ChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccc
Q 047445 354 PQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYA 393 (436)
Q Consensus 354 pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~ 393 (436)
|+..+|..+|. .|||---.+.++||+..|+|+.++|.-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67789999997 8888888999999999999999999876
No 131
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.03 E-value=4.6 Score=41.03 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=36.1
Q ss_pred CcEEecccCCh-hhhcCccCceeeee---ccC-cccHHHHHHcCCcEeecccc
Q 047445 345 MGMVVPSWAPQ-VEILRHSSTGGFLS---HCG-WNSSLESICHGVPMIAWPLY 392 (436)
Q Consensus 345 ~nv~v~~~~pq-~~lL~~~~v~~~I~---HGG-~~s~~eal~~GvP~l~~P~~ 392 (436)
.+|.+.+|..+ ..+|+.+|+ ||. .-| -+++.||+++|+|+|+....
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG 505 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG 505 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC
Confidence 57888888765 578999996 664 344 56999999999999987653
No 132
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=94.65 E-value=0.14 Score=50.48 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=52.6
Q ss_pred CCcEEecccCChhh---hcCccCceeeeeccC----cccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecc-c
Q 047445 344 GMGMVVPSWAPQVE---ILRHSSTGGFLSHCG----WNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASN-R 415 (436)
Q Consensus 344 ~~nv~v~~~~pq~~---lL~~~~v~~~I~HGG----~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~-~ 415 (436)
..++.+.+|+++.+ ++..+++.+||...- -++++||+++|+|+|+-...+ ....+.++ ..|+-... .
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~-~~G~l~~~~~ 362 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNG-GNGLLLSKDP 362 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCC-CcEEEeCCCC
Confidence 34788889999754 555433224665442 458999999999999865433 44555442 24444433 4
Q ss_pred cccccccccccccCC
Q 047445 416 IGKESDRTGRDREGS 430 (436)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (436)
+.+++.+++.+...+
T Consensus 363 ~~~~la~~I~~ll~~ 377 (407)
T cd04946 363 TPNELVSSLSKFIDN 377 (407)
T ss_pred CHHHHHHHHHHHHhC
Confidence 678888888776553
No 133
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=94.50 E-value=0.12 Score=50.92 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=52.9
Q ss_pred CcEEecccCChh---hhcCccCceeeeec---------cCc-ccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceee
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSH---------CGW-NSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRK 411 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~H---------GG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~ 411 (436)
+++.+.+|+|+. ++|..+|+ ||.- -|. ++++||+++|+|+|+....+ ....+.++ ..|+-
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceEE
Confidence 478899999975 57889996 5542 244 56899999999999976543 33344332 23444
Q ss_pred eccccccccccccccccC
Q 047445 412 ASNRIGKESDRTGRDREG 429 (436)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~ 429 (436)
...-+.+++.+++.+...
T Consensus 352 v~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 352 VPENDAQALAQRLAAFSQ 369 (406)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 444567778888776654
No 134
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.17 E-value=0.14 Score=51.06 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=75.0
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHH---Hh--cCC
Q 047445 270 PSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFL---QR--THG 344 (436)
Q Consensus 270 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~--~~~ 344 (436)
|++-+||.+|--...++++.++.-++-|++.+.-++|..+.+.. + . ..|. +. ...
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-------------g-----e--~rf~ty~~~~Gl~p 815 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-------------G-----E--QRFRTYAEQLGLEP 815 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-------------c-----h--HHHHHHHHHhCCCc
Confidence 46679999998888899999999999999999999999988754 1 0 1111 01 112
Q ss_pred CcEEecccCChhhhcC---ccCc--eeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhccee
Q 047445 345 MGMVVPSWAPQVEILR---HSST--GGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGR 410 (436)
Q Consensus 345 ~nv~v~~~~pq~~lL~---~~~v--~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~ 410 (436)
+.+.+.+-..-.+=.+ -+|| .-+.+ -|+.|.++.|++|||||.+|.-.--...|....-.+|+|-
T Consensus 816 ~riifs~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h 885 (966)
T KOG4626|consen 816 DRIIFSPVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH 885 (966)
T ss_pred cceeeccccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH
Confidence 2454434333222222 1232 11233 4789999999999999999974433333333322345553
No 135
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.85 E-value=1.3 Score=37.59 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=64.4
Q ss_pred EEcCCCCCCHHHHHHHHHHH-HhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHH
Q 047445 15 VLASPGLGHVVPLLEFAKRL-VINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHA 93 (436)
Q Consensus 15 ~~~~p~~GH~~P~l~LA~~L-~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (436)
++..++-||+.=|+.|.+.+ .++..++..+++...........++.+......++..++..... ..........
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v-----~q~~~~~~~~ 76 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREV-----GQSYLTSIFT 76 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEe-----chhhHhhHHH
Confidence 44567789999999999999 33314566666665533322223333322211234444421110 1112222333
Q ss_pred HHHHhhhHHHHHHHHhcCCCcEEEEcC--CcchHHHHHHHc------CCCeEEEecc
Q 047445 94 IVDESLKSSLKAVLIELCNPRALVIDL--FCTQAFEICSQL------SIPTYSFVTT 142 (436)
Q Consensus 94 ~~~~~~~~~l~~ll~~~~~pD~vI~D~--~~~~~~~~A~~~------giP~v~~~~~ 142 (436)
.+..... .+. ++.+. +||+||+.- .+.....+|..+ |.+.|.+-+.
T Consensus 77 ~l~~~~~-~~~-il~r~-rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 77 TLRAFLQ-SLR-ILRRE-RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHH-HHH-HHHHh-CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 3333333 333 34444 999999884 333444788888 9998887654
No 136
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=93.62 E-value=8.9 Score=38.87 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=36.8
Q ss_pred CCcEEecccCChhhhcCccCceeeee---ccC-cccHHHHHHcCCcEeecccc
Q 047445 344 GMGMVVPSWAPQVEILRHSSTGGFLS---HCG-WNSSLESICHGVPMIAWPLY 392 (436)
Q Consensus 344 ~~nv~v~~~~pq~~lL~~~~v~~~I~---HGG-~~s~~eal~~GvP~l~~P~~ 392 (436)
.++|.+.++.+..++++.+++ +|. .-| ..++.||+++|+|+|+.-..
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~ 425 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN 425 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC
Confidence 346888888888899999996 554 233 45899999999999997653
No 137
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=93.60 E-value=4.6 Score=38.74 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=37.7
Q ss_pred cEEecccCCh---hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHH
Q 047445 346 GMVVPSWAPQ---VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAML 402 (436)
Q Consensus 346 nv~v~~~~pq---~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v 402 (436)
.+.+.+|+|| +.+|-.||+ .||= |==|+.-|..+|+|.|= +.+=|.++|..+
T Consensus 245 ~l~~lPF~~Q~~yD~LLw~cD~-NfVR--GEDSfVRAqwAgkPFvW--hIYpQ~d~aHl~ 299 (374)
T PF10093_consen 245 TLHVLPFVPQDDYDRLLWACDF-NFVR--GEDSFVRAQWAGKPFVW--HIYPQEDDAHLD 299 (374)
T ss_pred EEEECCCCCHHHHHHHHHhCcc-ceEe--cchHHHHHHHhCCCceE--ecCcCchhhHHH
Confidence 5667799998 479999996 5553 66799999999999873 234455555443
No 138
>PLN02939 transferase, transferring glycosyl groups
Probab=93.37 E-value=14 Score=40.10 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCC------CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASP------GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p------~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+.|||||++.- .-|=-.-.-+|.++|++. ||+|.+++|..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 356999999852 345566678899999998 99999999966
No 139
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=93.35 E-value=0.47 Score=42.59 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=63.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCC---CCceEEecCC--CCCCCCCCCCc
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLP---DGLDVVDLPP--VDVSAVTRDDM 85 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~ 85 (436)
||||+.-=-+. |.-=+.+|+++|+ . +++|+++.+.. .+.-..+.- ..++...+.. ....+. |.++
T Consensus 1 mrILlTNDDGi-~a~Gi~aL~~al~-~-~~dV~VVAP~~------~qSg~s~slTl~~Plr~~~~~~~~~av~GT-PaDC 70 (252)
T COG0496 1 MRILLTNDDGI-HAPGIRALARALR-E-GADVTVVAPDR------EQSGASHSLTLHEPLRVRQVDNGAYAVNGT-PADC 70 (252)
T ss_pred CeEEEecCCcc-CCHHHHHHHHHHh-h-CCCEEEEccCC------CCcccccccccccCceeeEeccceEEecCC-hHHH
Confidence 56666655554 6667889999998 7 99999999988 333222210 0122222221 111111 1111
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCC----------cc---hHHHHHHHcCCCeEEEecc
Q 047445 86 PVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLF----------CT---QAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~----------~~---~~~~~A~~~giP~v~~~~~ 142 (436)
..- .+..++++. +||+||+... .+ +++.=|..+|||.|.++..
T Consensus 71 ------------V~l-al~~l~~~~-~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 71 ------------VIL-GLNELLKEP-RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ------------HHH-HHHHhccCC-CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 122 566777776 8999998632 22 3445667789999988654
No 140
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.06 E-value=0.38 Score=41.88 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||||+.-=-+. +..=+..|+++|++. ||+|+++.+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~ 37 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDS 37 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCC
Confidence 67888777666 667789999999776 89999999988
No 141
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=92.83 E-value=0.72 Score=44.89 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=51.3
Q ss_pred CcEEecccCChh---hhcCccCceeeeec----cCc-ccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceee-eccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSH----CGW-NSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRK-ASNR 415 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~H----GG~-~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~-~~~~ 415 (436)
.++.+.+++|+. .+++.+|+ +|.. .|. .++.||+++|+|+|+....+ +...+.++ ..|.- ....
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~-~~G~~l~~~~ 329 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEG-ITGYHLAEPM 329 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccC-CceEEEeCCC
Confidence 477788999864 56999996 5532 343 56789999999999987533 33444342 23332 2344
Q ss_pred cccccccccccccCC
Q 047445 416 IGKESDRTGRDREGS 430 (436)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (436)
+++++.+++.+..++
T Consensus 330 d~~~la~~I~~ll~d 344 (380)
T PRK15484 330 TSDSIISDINRTLAD 344 (380)
T ss_pred CHHHHHHHHHHHHcC
Confidence 577777777666554
No 142
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.60 E-value=9.8 Score=36.28 Aligned_cols=105 Identities=18% Similarity=0.104 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|+|+++-....|++.=.+.+-+.|+++. +.++++++.+. ...+.+..+ .++-+-.-. .....
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~------~~~i~~~~p-~I~~vi~~~-------~~~~~--- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKG------FAPILKLNP-EIDKVIIID-------KKKKG--- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccc------hHHHHhcCh-Hhhhhcccc-------ccccc---
Confidence 6899999999999999999999999984 59999999999 777777765 332111100 00001
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYS 138 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 138 (436)
....... .+...+++. ++|+||.=.-.+-...++...++|.-.
T Consensus 65 ----~~~~~~~-~l~~~lr~~-~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ----LGLKERL-ALLRTLRKE-RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ----cchHHHH-HHHHHhhcc-CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0011222 344555555 899999777666666777788887543
No 143
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.32 E-value=1.6 Score=37.08 Aligned_cols=30 Identities=7% Similarity=0.150 Sum_probs=25.3
Q ss_pred CCcEEEEcCCcchHHHHHHHc-CCCeEEEec
Q 047445 112 NPRALVIDLFCTQAFEICSQL-SIPTYSFVT 141 (436)
Q Consensus 112 ~pD~vI~D~~~~~~~~~A~~~-giP~v~~~~ 141 (436)
.||+||...-.-.++.+-+.+ ++|.+.+.=
T Consensus 66 ~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 66 VPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 899999998777777899998 899887643
No 144
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.29 E-value=0.47 Score=39.83 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 047445 20 GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESL 99 (436)
Q Consensus 20 ~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (436)
..|=-.-+..|+++|+++ ||+|+++++.. ....... .......... .........+. ..
T Consensus 11 ~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~------~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~~-----~~ 69 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKR-GHEVTVVSPGV------KDPIEEE-----LVKIFVKIPY----PIRKRFLRSFF-----FM 69 (177)
T ss_dssp SSHHHHHHHHHHHHHHHT-T-EEEEEESS-------TTS-SST-----EEEE---TT-----SSTSS--HHHH-----HH
T ss_pred CChHHHHHHHHHHHHHHC-CCEEEEEEcCC------Cccchhh-----ccceeeeeec----ccccccchhHH-----HH
Confidence 456778899999999999 99999998877 1111111 0011110000 00011111111 12
Q ss_pred hHHHHHHHHhcCCCcEEEEcCC-cchHHHHHHHcCCCeEEEecchH
Q 047445 100 KSSLKAVLIELCNPRALVIDLF-CTQAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 100 ~~~l~~ll~~~~~pD~vI~D~~-~~~~~~~A~~~giP~v~~~~~~~ 144 (436)
. .+.+++++. +||+|-.... ..+...++-. ++|.+.......
T Consensus 70 ~-~~~~~i~~~-~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 70 R-RLRRLIKKE-KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp H-HHHHHHHHH-T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred H-HHHHHHHHc-CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 2 466788888 9999944432 2233333333 999888776654
No 145
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=91.79 E-value=1.7 Score=43.61 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=30.5
Q ss_pred CEEEEEcCC------CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASP------GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p------~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|||++++.- .-|=-.-.-.|+++|+++ ||+|+++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~-G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAAL-GHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 678888853 335556678999999999 99999999865
No 146
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.13 E-value=2.3 Score=34.67 Aligned_cols=61 Identities=15% Similarity=0.019 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLP 73 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (436)
+++.+||+.+.++-+|..=..-++..|+++ |++|+++.... ....+.+.+.+.. .+++.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~v--p~e~i~~~a~~~~--~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMT--SQEEFIDAAIETD--ADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCC--CHHHHHHHHHHcC--CCEEEEc
Confidence 467899999999999999999999999998 99999999876 3223444444444 4555544
No 147
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=90.99 E-value=1.4 Score=40.01 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.++||||+.-=-+. |.-=+.+|+++|++. | +|+++.+..
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~ 41 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKI-G-RVTVVAPAE 41 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhC-C-CEEEEcCCC
Confidence 45789888776555 456688999999987 8 799888877
No 148
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.24 E-value=11 Score=31.64 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
-|.+.+.++.|-....+++|-+...+ |++|.|+..-......-.....++++ ++++.......... .. +. ..-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~--~~--~~-~~~ 76 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWT--TE--ND-EED 76 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccC--CC--Ch-HHH
Confidence 47778888999999999999999998 99999944322000001334455555 68877765432111 11 11 111
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ 124 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~ 124 (436)
......... ..++.+.+- ++|+||-|-....
T Consensus 77 ~~~a~~~~~-~a~~~~~~~-~~dLlVLDEi~~a 107 (159)
T cd00561 77 IAAAAEGWA-FAKEAIASG-EYDLVILDEINYA 107 (159)
T ss_pred HHHHHHHHH-HHHHHHhcC-CCCEEEEechHhH
Confidence 122223333 445566666 9999999975543
No 149
>PHA01633 putative glycosyl transferase group 1
Probab=89.22 E-value=3.1 Score=39.65 Aligned_cols=80 Identities=13% Similarity=-0.002 Sum_probs=53.5
Q ss_pred cEEec---ccCCh---hhhcCccCceeeeec---cC-cccHHHHHHcCCcEeeccc------cccc------hhHHHHHH
Q 047445 346 GMVVP---SWAPQ---VEILRHSSTGGFLSH---CG-WNSSLESICHGVPMIAWPL------YAEQ------KMNAAMLT 403 (436)
Q Consensus 346 nv~v~---~~~pq---~~lL~~~~v~~~I~H---GG-~~s~~eal~~GvP~l~~P~------~~DQ------~~nA~~v~ 403 (436)
++.+. +++++ .++++.+|+ |+.- =| ..++.||+++|+|+|+--. .+|+ .+++.-..
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 67776 45554 367889995 6653 23 4578999999999998633 3333 33343333
Q ss_pred h-hhcceeeeccccccccccccccc
Q 047445 404 E-ETRGGRKASNRIGKESDRTGRDR 427 (436)
Q Consensus 404 ~-~~G~g~~~~~~~~~~~~~~~~~~ 427 (436)
+ .-|.|......+++++.+++..+
T Consensus 280 ~~~~g~g~~~~~~d~~~la~ai~~~ 304 (335)
T PHA01633 280 DKEHGQKWKIHKFQIEDMANAIILA 304 (335)
T ss_pred CcccCceeeecCCCHHHHHHHHHHH
Confidence 2 34667777778888888888766
No 150
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.94 E-value=3.2 Score=34.62 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPP 74 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (436)
..|+|.+.-.|+.|-..-++.++..|.+. |+.|-=+.++. .++--...| |+.+++..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~E------VR~gGkR~G--F~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPE------VREGGKRIG--FKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeee------eecCCeEee--eEEEEccC
Confidence 46899999999999999999999999999 99998777777 554444554 77677663
No 151
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=86.95 E-value=19 Score=31.09 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHH
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
.+-.|.+++..+.|-....+.+|-+...+ |++|.++-.-.....--....++..+ ++.+.......... .. +.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~--~~--~~- 93 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWE--TQ--DR- 93 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCccc--CC--Cc-
Confidence 34579999999999999999999999998 99999987644110011334444444 68877765421111 11 11
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
..-......... ..++.+.+- ++|+||-|-...
T Consensus 94 ~e~~~~~~~~~~-~a~~~l~~~-~ydlvVLDEi~~ 126 (191)
T PRK05986 94 ERDIAAAREGWE-EAKRMLADE-SYDLVVLDELTY 126 (191)
T ss_pred HHHHHHHHHHHH-HHHHHHhCC-CCCEEEEehhhH
Confidence 111222223333 444556555 999999997544
No 152
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=86.91 E-value=4.4 Score=36.98 Aligned_cols=93 Identities=23% Similarity=0.235 Sum_probs=55.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
|+|+++..-+. -..||+.|.++ ||+|+..+... .........+ ..... .. .+
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~-g~~v~~s~~t~-----~~~~~~~~~g-~~~v~-~g-----~l---------- 52 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQ-GIEILVTVTTS-----EGKHLYPIHQ-ALTVH-TG-----AL---------- 52 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhC-CCeEEEEEccC-----CccccccccC-CceEE-EC-----CC----------
Confidence 45555543222 56899999998 99999887766 0112222221 11111 00 00
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch------HHHHHHHcCCCeEEEe
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ------AFEICSQLSIPTYSFV 140 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~------~~~~A~~~giP~v~~~ 140 (436)
... .+++++++. ++|+||--.+.++ +..+|+.+|||++.+-
T Consensus 53 -------~~~-~l~~~l~~~-~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 -------DPQ-ELREFLKRH-SIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -------CHH-HHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 112 455677777 9998876555443 3368999999999874
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=86.03 E-value=5.1 Score=31.55 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|||+.+.++-.|...+.-++..|+++ |++|+++....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~~ 37 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVDV 37 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 58999999999999999999999998 99998887654
No 154
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.02 E-value=13 Score=32.45 Aligned_cols=101 Identities=13% Similarity=0.026 Sum_probs=62.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHH-HH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVI-TR 90 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 90 (436)
-|+|...|+.|.......||++|+++ +|+|..++... -.. +.. .+..... ..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kdy------~~~--------i~~------------DEslpi~ke~ 55 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKDY------LRG--------ILW------------DESLPILKEV 55 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhccccchhh------hhh--------eec------------ccccchHHHH
Confidence 46677789999999999999999999 99998877654 110 110 0000111 11
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchH------HHHHHHcCCCeEEEecch
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQA------FEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~------~~~A~~~giP~v~~~~~~ 143 (436)
......+. ..+.+..++ +--+||+|...+.- ...|..++.++.++....
T Consensus 56 yres~~ks---~~rlldSal-kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~ 110 (261)
T COG4088 56 YRESFLKS---VERLLDSAL-KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRT 110 (261)
T ss_pred HHHHHHHH---HHHHHHHHh-cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 11222111 334455556 66799999866642 147788899987776543
No 155
>PRK05973 replicative DNA helicase; Provisional
Probab=85.18 E-value=11 Score=34.00 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...||.|-..-.+.++....++ |..|.|++.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEe 102 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEY 102 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeC
Confidence 46777789999999999999999888 99999999987
No 156
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.76 E-value=22 Score=35.86 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCC---------CceEEecCCCCCCCCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPD---------GLDVVDLPPVDVSAVT 81 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 81 (436)
.-+|+...|+.|-..-.+.++.+..++ |..|.+++.++ .........+.+|- .+.+..+.
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eE--s~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~-------- 332 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEE--SRAQLLRNAYSWGIDFEEMEQQGLLKIICAY-------- 332 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeC--CHHHHHHHHHHcCCChHHHhhCCcEEEEEcc--------
Confidence 357777889999999999999999999 99999999987 33334444455541 12222211
Q ss_pred CCCchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchH---------------HHHHHHcCCCeEEEec
Q 047445 82 RDDMPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQA---------------FEICSQLSIPTYSFVT 141 (436)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~---------------~~~A~~~giP~v~~~~ 141 (436)
|.... ...... .+.+.+++. ++|+||.|+....- ...++..|+..+....
T Consensus 333 p~~~~--------~~~~~~-~i~~~i~~~-~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~ 397 (484)
T TIGR02655 333 PESAG--------LEDHLQ-IIKSEIADF-KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397 (484)
T ss_pred cccCC--------hHHHHH-HHHHHHHHc-CCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeec
Confidence 11111 122333 556677777 99999999866431 1244566777665543
No 157
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=83.49 E-value=7.3 Score=35.22 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||||+.-=-+. |..=+.+|+++|++. | +|+++.+..
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~ 36 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKEL-G-EVTVVAPAR 36 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhC-C-CEEEEeCCC
Confidence 46665554443 555678999999998 8 899999887
No 158
>PRK04328 hypothetical protein; Provisional
Probab=83.30 E-value=34 Score=31.00 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.-+++.-.|+.|...-.+.++.+-.++ |..+.+++.+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee 61 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEE 61 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeC
Confidence 456777788999999999988887777 99999999977
No 159
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=82.95 E-value=3 Score=38.75 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=53.2
Q ss_pred CcEE-ecccCC---hhhhcCccCceeeeec--cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccccc
Q 047445 345 MGMV-VPSWAP---QVEILRHSSTGGFLSH--CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRIGK 418 (436)
Q Consensus 345 ~nv~-v~~~~p---q~~lL~~~~v~~~I~H--GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~~~ 418 (436)
.++. +++++| +..+|++||++.|+|+ =|.|+++-.++.|||+++-- +-+.|....+.|+-+-.+.+.++..
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~e~gv~Vlf~~d~L~~~ 282 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLTEQGLPVLFTGDDLDED 282 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHHhCCCeEEecCCcccHH
Confidence 3555 356777 5679999999777776 48999999999999999763 4455555443333333366667766
Q ss_pred cccccc
Q 047445 419 ESDRTG 424 (436)
Q Consensus 419 ~~~~~~ 424 (436)
.+.++-
T Consensus 283 ~v~e~~ 288 (322)
T PRK02797 283 IVREAQ 288 (322)
T ss_pred HHHHHH
Confidence 666653
No 160
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=82.78 E-value=30 Score=29.75 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=61.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
-|.+.+..+.|-..-.+.+|-+..-+ |.+|.++..-......-.+..++..+..+.|..++...... ..+..+..
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~----~~~~~~d~ 104 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWE----TQDREADI 104 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCC----CcCcHHHH
Confidence 47777888999999988888877776 88888877533110111223334444458888777322211 11111122
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ 124 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~ 124 (436)
........ ...+++++- ++|+||.|-+++.
T Consensus 105 -~aa~~~w~-~a~~~l~~~-~ydlviLDEl~~a 134 (198)
T COG2109 105 -AAAKAGWE-HAKEALADG-KYDLVILDELNYA 134 (198)
T ss_pred -HHHHHHHH-HHHHHHhCC-CCCEEEEehhhHH
Confidence 23333333 445566666 9999999986653
No 161
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=82.71 E-value=11 Score=34.70 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=34.5
Q ss_pred cEEecccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeeccc
Q 047445 346 GMVVPSWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPL 391 (436)
Q Consensus 346 nv~v~~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~ 391 (436)
.+.+.+-++-.++|.+++ ++||-.+ +.-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 344556778889999999 5777755 477899999999999874
No 162
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=82.41 E-value=1.7 Score=40.92 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=31.9
Q ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||++|+.. +|-|-..-..++|..++++ |++|.++|+..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dp 39 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDP 39 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESST
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCC
Confidence 46666664 7889999999999999999 99999999987
No 163
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=82.13 E-value=8.5 Score=34.96 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||||+.-=-+. |.-=+..|+++|++ +|+|+++.+..
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~--~~~V~VvAP~~ 36 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK--YHEVIIVAPEN 36 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh--CCcEEEEccCC
Confidence 56666654433 33348899999964 67999999887
No 164
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=81.74 E-value=2.5 Score=35.81 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHH--H-HHHH--c-CCCeEEEec
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAF--E-ICSQ--L-SIPTYSFVT 141 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~--~-~A~~--~-giP~v~~~~ 141 (436)
.+.++|++. +||+||+...+...+ . +-++ + ++|.+.+.|
T Consensus 80 ~l~~~l~~~-~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 80 RLIRLLREF-QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHhhc-CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 677888888 999999998665443 1 2222 3 467666554
No 165
>PRK06849 hypothetical protein; Provisional
Probab=81.58 E-value=9.6 Score=37.19 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+++++||++.... ...+.+|+.|.++ ||+|+.+....
T Consensus 2 ~~~~~VLI~G~~~----~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGARA----PAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCCc----HHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3567888885332 3689999999999 99999998775
No 166
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=81.06 E-value=23 Score=32.17 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||||+.-=-+. |.-=+.+|+++|++ +|+|+++.+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~--~~~V~VvAP~~ 36 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE--KHEVFVVAPDK 36 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh--CCcEEEEccCC
Confidence 56776665554 45558899999964 67999999887
No 167
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=80.97 E-value=25 Score=32.14 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=27.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||||+.-=-+. |..=+.+|+++|++. | +|+++.+..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~-g-~V~VvAP~~ 36 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPL-G-EVDVVAPET 36 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhC-C-cEEEEccCC
Confidence 46666665555 556789999999987 7 799998877
No 168
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=80.60 E-value=18 Score=32.68 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=25.5
Q ss_pred EEEEEcCC------CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASP------GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p------~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|||+++.- .-|=-.-.-.|+++|+++ ||+|+++++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHT-T-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhc-CCeEEEEEccc
Confidence 46666542 334556678899999999 99999999976
No 169
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=80.59 E-value=9.3 Score=34.25 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=33.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.-+++...|+.|...-...++....++ |..|.|++.+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTEN 63 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCC
Confidence 346677788999999999999887778 99999999987
No 170
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=80.40 E-value=6.9 Score=36.95 Aligned_cols=82 Identities=9% Similarity=0.007 Sum_probs=54.3
Q ss_pred CCCcEE-ecccCC---hhhhcCccCceeeeec--cCcccHHHHHHcCCcEeeccccccchhHHHHHHhhhcceeeecccc
Q 047445 343 HGMGMV-VPSWAP---QVEILRHSSTGGFLSH--CGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEETRGGRKASNRI 416 (436)
Q Consensus 343 ~~~nv~-v~~~~p---q~~lL~~~~v~~~I~H--GG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~g~~~~~~~ 416 (436)
+..++. +.+++| +.++|+.||++.|+|. =|+|+++-.|+.|+|++.- .+-+.+-...++++-+--....++
T Consensus 243 ~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 243 GAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKEQGIPVLFYGDELD 319 (360)
T ss_pred CccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHhCCCeEEeccccCC
Confidence 334665 457888 4679999999766664 5899999999999999874 344555444433222223335566
Q ss_pred ccccccccccc
Q 047445 417 GKESDRTGRDR 427 (436)
Q Consensus 417 ~~~~~~~~~~~ 427 (436)
...+.+|-|..
T Consensus 320 ~~~v~ea~rql 330 (360)
T PF07429_consen 320 EALVREAQRQL 330 (360)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 171
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.33 E-value=25 Score=31.00 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=56.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCC------------CCceEEecCCCCCCCCCCCC
Q 047445 17 ASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLP------------DGLDVVDLPPVDVSAVTRDD 84 (436)
Q Consensus 17 ~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 84 (436)
---+.|..-=...++.-+... ||.|++++++. ..++++.... ..+.|.++...... .+
T Consensus 35 Gd~~tGKSvLsqr~~YG~L~~-g~~v~yvsTe~-----T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~----~~ 104 (235)
T COG2874 35 GDNGTGKSVLSQRFAYGFLMN-GYRVTYVSTEL-----TVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN----WG 104 (235)
T ss_pred CCCCccHHHHHHHHHHHHHhC-CceEEEEEech-----hHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc----cC
Confidence 334889999999999999998 99999999997 3555554322 23444444322111 11
Q ss_pred chHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchH
Q 047445 85 MPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQA 125 (436)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~ 125 (436)
.. ..+.... .+-+.++.+ +-|++|.|++...+
T Consensus 105 ~~-------~~~~~L~-~l~~~~k~~-~~dViIIDSls~~~ 136 (235)
T COG2874 105 RR-------SARKLLD-LLLEFIKRW-EKDVIIIDSLSAFA 136 (235)
T ss_pred hH-------HHHHHHH-HHHhhHHhh-cCCEEEEecccHHh
Confidence 11 1111222 333455567 99999999987765
No 172
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=79.74 E-value=37 Score=30.99 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCC-CeEEEEEcCCCCch--hHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHH
Q 047445 27 LLEFAKRLVINHG-VHVRFLVITTNEAS--AAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSL 103 (436)
Q Consensus 27 ~l~LA~~L~~r~G-h~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (436)
.+..|-+|++++| .+||.+|-...... ...++.+. .|..- -+-+....+. +.+... ... .+
T Consensus 41 AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLA-mGaD~-avli~d~~~~-----g~D~~~--------tA~-~L 104 (256)
T PRK03359 41 AIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLS-RGPDE-LIVVIDDQFE-----QALPQQ--------TAS-AL 104 (256)
T ss_pred HHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHH-cCCCE-EEEEecCccc-----CcCHHH--------HHH-HH
Confidence 4677888888643 79999998762211 11222222 33111 1223222111 112111 111 35
Q ss_pred HHHHHhcCCCcEEEEcCCcc------hHHHHHHHcCCCeEEEecc
Q 047445 104 KAVLIELCNPRALVIDLFCT------QAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 104 ~~ll~~~~~pD~vI~D~~~~------~~~~~A~~~giP~v~~~~~ 142 (436)
.+.+++. .||+|++...+. .+..+|+.+|+|++.+...
T Consensus 105 a~ai~~~-~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 105 AAAAQKA-GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHh-CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 5677778 999999864332 4558999999999987654
No 173
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=79.63 E-value=12 Score=34.16 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++|..-|+.|...-..++|..+++. |++|.+++...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCC
Confidence 3444568999999999999999998 99999999876
No 174
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=79.62 E-value=4.3 Score=39.21 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=66.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHH
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLH 92 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (436)
||+---|+.|...=++.++..|+++ | .|.+++.++ .....+-.+++++ + +.... .
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEE--S~~QiklRA~RL~--~-----~~~~l--------------~ 150 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEE--SLQQIKLRADRLG--L-----PTNNL--------------Y 150 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCc--CHHHHHHHHHHhC--C-----Cccce--------------E
Confidence 5666679999999999999999999 8 999999988 4444555555554 1 11111 1
Q ss_pred HHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc----h-----------------HHHHHHHcCCCeEEEec
Q 047445 93 AIVDESLKSSLKAVLIELCNPRALVIDLFCT----Q-----------------AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 93 ~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~----~-----------------~~~~A~~~giP~v~~~~ 141 (436)
.+.....+ .+.+.+++. +||++|.|+.-. . -..+|+..||+.+.+..
T Consensus 151 l~aEt~~e-~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 151 LLAETNLE-DIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred EehhcCHH-HHHHHHHhc-CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 11122334 455566667 999999996321 1 11477778888766543
No 175
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=79.56 E-value=10 Score=32.67 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=51.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcC-CCCceEEecCCCCCCCCCCCCchHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSL-PDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
.++-+-..+-|-++-...|+++|.+++ |++|.+-++.. ...+.+++. +..+...-+|. +
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~-----tg~~~~~~~~~~~v~~~~~P~---------D----- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP-----TGREMARKLLPDRVDVQYLPL---------D----- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C-----CHHHHHHGG-GGG-SEEE------------S-----
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC-----chHHHHHHhCCCCeEEEEeCc---------c-----
Confidence 466666778899999999999999864 78888777644 144434332 21222222221 1
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchH--HHHHHHcCCCeEEEec
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQA--FEICSQLSIPTYSFVT 141 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~--~~~A~~~giP~v~~~~ 141 (436)
... .++..++.+ +||++|.--...|. +..|++.|||.+.+..
T Consensus 83 --------~~~-~~~rfl~~~-~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 --------FPW-AVRRFLDHW-RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --------SHH-HHHHHHHHH---SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred --------CHH-HHHHHHHHh-CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 111 456788899 99998865545544 3588889999887654
No 176
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=79.52 E-value=9.1 Score=32.68 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+++...|+.|-..-.+.++....+. |..|.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCC
Confidence 5777789999999999999999988 99999999876
No 177
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=79.39 E-value=2.9 Score=33.63 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+||++...++.+=.. ...+.++|+++ |++|.++.++.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCc
Confidence 578888888876666 99999999999 99999999998
No 178
>PRK12342 hypothetical protein; Provisional
Probab=79.13 E-value=26 Score=31.92 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCCchhH-H-HHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHH
Q 047445 27 LLEFAKRLVINHGVHVRFLVITTNEASAA-Q-EKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLK 104 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (436)
.+..|-+|++. |.+|+.+|-........ . ++.+ ..|.. +.+-+.+..+. +.+... ... .+.
T Consensus 40 AlE~AlrLk~~-g~~Vtvls~Gp~~a~~~~l~r~al-amGaD-~avli~d~~~~-----g~D~~a--------ta~-~La 102 (254)
T PRK12342 40 AIEAASQLATD-GDEIAALTVGGSLLQNSKVRKDVL-SRGPH-SLYLVQDAQLE-----HALPLD--------TAK-ALA 102 (254)
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCChHhHHHHHHHHH-HcCCC-EEEEEecCccC-----CCCHHH--------HHH-HHH
Confidence 36677888865 99999999876221111 1 2112 23311 11223222111 112111 111 455
Q ss_pred HHHHhcCCCcEEEEcCCcc------hHHHHHHHcCCCeEEEecc
Q 047445 105 AVLIELCNPRALVIDLFCT------QAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 105 ~ll~~~~~pD~vI~D~~~~------~~~~~A~~~giP~v~~~~~ 142 (436)
+.+++. .||+|++...+. .+..+|+.+|+|++.+...
T Consensus 103 ~~i~~~-~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 103 AAIEKI-GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHh-CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 677778 999999874333 3568999999999987654
No 179
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.92 E-value=17 Score=34.38 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=33.2
Q ss_pred CEEEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+||+|++. +|-|-..-..++|-.|++. |.+|.++++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCC
Confidence 57888876 6889999999999999999 99888888877
No 180
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=78.81 E-value=3.6 Score=32.53 Aligned_cols=38 Identities=11% Similarity=-0.001 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCC---CHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLG---HVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~G---H~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|||+|+--|-.+ .-.-.++|+++.++| ||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCc
Confidence 577787776443 334678889999999 99999999887
No 181
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=78.73 E-value=17 Score=30.43 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 047445 18 SPGLGHVVPLLEFAKRLVINHGVHVRFLV 46 (436)
Q Consensus 18 ~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~ 46 (436)
.++.|...-.+.|++.|+++ |.+|.++-
T Consensus 6 ~~~~GKT~va~~L~~~l~~~-g~~V~~~k 33 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKA-GYSVGYYK 33 (166)
T ss_pred CCCccHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 46789999999999999999 99999973
No 182
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=78.12 E-value=24 Score=29.57 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCC-CCchhHHHHHhhcCCCCc-eEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHH
Q 047445 25 VPLLEFAKRLVINHGVHVRFLVITT-NEASAAQEKLLRSLPDGL-DVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSS 102 (436)
Q Consensus 25 ~P~l~LA~~L~~r~Gh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (436)
.-++..|++|++..|.+|+.++-.. .......++....+| . +.+.+..+..... .... ... .
T Consensus 18 ~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G--~d~v~~~~~~~~~~~------~~~~-------~a~-~ 81 (164)
T PF01012_consen 18 LEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYG--ADKVYHIDDPALAEY------DPEA-------YAD-A 81 (164)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTT--ESEEEEEE-GGGTTC-------HHH-------HHH-H
T ss_pred HHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcC--CcEEEEecCcccccc------CHHH-------HHH-H
Confidence 3468899999987788888887653 122222333455455 3 3444443222111 1111 222 4
Q ss_pred HHHHHHhcCCCcEEEEcCCcch---HHHHHHHcCCCeEEEecc
Q 047445 103 LKAVLIELCNPRALVIDLFCTQ---AFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 103 l~~ll~~~~~pD~vI~D~~~~~---~~~~A~~~giP~v~~~~~ 142 (436)
+.+++++. +||+|+.-..... +..+|.++|.|++.-.+.
T Consensus 82 l~~~~~~~-~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~ 123 (164)
T PF01012_consen 82 LAELIKEE-GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTD 123 (164)
T ss_dssp HHHHHHHH-T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEE
T ss_pred HHHHHHhc-CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEE
Confidence 55677777 9999998875553 347999999999876553
No 183
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=77.95 E-value=22 Score=31.88 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.-+++...|+.|...-.+.++.+-.++ |-.|.|++.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee 59 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEE 59 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeC
Confidence 457778889999999999988876678 99999999887
No 184
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=77.77 E-value=17 Score=32.31 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
.-+++...|+.|-..-.+.++....++ |+.|.+++.+. ......+.....+ +.+...-..... . .... ...
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~--~~~~l~~~~~~~~--~~~~~~~~~~l~-~--~~~~-~~~ 87 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEE--REERILGYAKSKG--WDLEDYIDKSLY-I--VRLD-PSD 87 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHHHcC--CChHHHHhCCeE-E--EecC-HHH
Confidence 346666678999999999999888888 99999999987 2222333334444 221111000000 0 0000 011
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
+......... .++.++++. +++++|.|++..
T Consensus 88 ~~~~~~~l~~-~~~~~i~~~-~~~~vVIDsls~ 118 (224)
T TIGR03880 88 FKTSLNRIKN-ELPILIKEL-GASRVVIDPISL 118 (224)
T ss_pred HHhhHHHHHH-HHHHHHHHh-CCCEEEEcChHH
Confidence 1222333333 566777778 999999997543
No 185
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=77.55 E-value=1.9 Score=41.15 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=45.7
Q ss_pred CcEEecccCChhhh---cCccCceeeeec-------cCcc------cHHHHHHcCCcEeeccccccchhHHHHHHhhhcc
Q 047445 345 MGMVVPSWAPQVEI---LRHSSTGGFLSH-------CGWN------SSLESICHGVPMIAWPLYAEQKMNAAMLTEETRG 408 (436)
Q Consensus 345 ~nv~v~~~~pq~~l---L~~~~v~~~I~H-------GG~~------s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~G~ 408 (436)
.|+.+.+|+|+.++ |.. +.+++... +.+. -+.+.+++|+|+|+.. +...+..|.+ .++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~-~~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVE-NGL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHh-CCc
Confidence 38999899998765 444 54333221 1111 2677899999999854 4567777766 355
Q ss_pred eeeecccccccccccccc
Q 047445 409 GRKASNRIGKESDRTGRD 426 (436)
Q Consensus 409 g~~~~~~~~~~~~~~~~~ 426 (436)
|+-.. +.+++.+++..
T Consensus 281 G~~v~--~~~el~~~l~~ 296 (333)
T PRK09814 281 GFVVD--SLEELPEIIDN 296 (333)
T ss_pred eEEeC--CHHHHHHHHHh
Confidence 55544 34456665554
No 186
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=77.25 E-value=13 Score=32.26 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+++|.|=..||-|-++-|+.=|++|+++ |.+|.+..-+.
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vet 43 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVET 43 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecC
Confidence 35789999999999999999999999999 99999987665
No 187
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=77.17 E-value=20 Score=32.70 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-.+.+|...+++ |..|.|++.+.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 46667788999999999999998888 99999999886
No 188
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=76.90 E-value=23 Score=32.42 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=56.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcC--CCeEEEEEcCCCCchhHHHHHhhc---CCCCceEEecCCC--CCCCCCCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINH--GVHVRFLVITTNEASAAQEKLLRS---LPDGLDVVDLPPV--DVSAVTRD 83 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~--Gh~Vt~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~ 83 (436)
||||+.-=-+. |.-=+.+|+++|.+.. |++|+++.+.. .+.-..+ +...++...+... ..++. |.
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~------eqSg~ghaiT~~~pl~~~~~~~~~yav~GT-Pa 72 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAF------EQSGVGHCISYTHPMMIAELGPRRFAAEGS-PA 72 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCC------CCCCCcccccCCCCeEEEEeCCCeEEEcCc-hH
Confidence 45555544333 4445677778776531 38999999887 2222211 1112444443310 01111 11
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC----------Ccc---hHHHHHHHcCCCeEEEec
Q 047445 84 DMPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDL----------FCT---QAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~----------~~~---~~~~~A~~~giP~v~~~~ 141 (436)
+ ...- .+..++..- +||+||+.. +.+ +++.-|..+|||.+.++.
T Consensus 73 D------------CV~l-al~~~~~~~-~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 73 D------------CVLA-ALYDVMKDA-PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred H------------HHHH-HHHHhcCCC-CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 1 0111 344454324 899999853 222 344566778999999875
No 189
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.09 E-value=22 Score=31.07 Aligned_cols=60 Identities=18% Similarity=0.091 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLP 73 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (436)
++.+|++.+.++-.|-.-..-++..|+++ |++|+++.... ......+.+.+.. .+++.+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~~--p~~~l~~~~~~~~--~d~v~lS 140 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRDV--PPEEFVEAVKEHK--PDILGLS 140 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCCC--CHHHHHHHHHHcC--CCEEEEe
Confidence 35799999999999999999999999998 99999887654 2223333344433 4444444
No 190
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=76.07 E-value=13 Score=36.89 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchH
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV 87 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (436)
.+.||||++-.+++-| +||+.|++. ++...+++.+. ....... . .......+..
T Consensus 2 ~~~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~pg------n~g~~~~-~------~~~~~~~~~~------- 55 (426)
T PRK13789 2 QVKLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFPG------NGGFPDD-E------LLPADSFSIL------- 55 (426)
T ss_pred CCCcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEECC------chHHhcc-c------cccccCcCcC-------
Confidence 3568999999999877 689999998 86656666555 1111111 0 0000000000
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch---HHHHHHHcCCCeE
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ---AFEICSQLSIPTY 137 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~---~~~~A~~~giP~v 137 (436)
... .+.++.++. ++|+||.+.-.+. .+.+++++|+|++
T Consensus 56 ----------d~~-~l~~~a~~~-~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 56 ----------DKS-SVQSFLKSN-PFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred ----------CHH-HHHHHHHHc-CCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 122 444566777 9999998754433 2356778999965
No 191
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=76.04 E-value=31 Score=30.48 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=28.0
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEc
Q 047445 13 VAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVI 47 (436)
Q Consensus 13 il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~ 47 (436)
|++.+. ...|...-.+.|++.|+++ |++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~-g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREA-GYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHc-CCceEEEee
Confidence 344443 5789999999999999999 999988874
No 192
>PRK06321 replicative DNA helicase; Provisional
Probab=75.92 E-value=41 Score=33.80 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-.+.+|...+.++|..|.|+|-+-
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 46777789999999999999998743389999999887
No 193
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=75.88 E-value=47 Score=30.89 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+...|=+.-.|+-|-..-.-.|.+.|.++ ||+|-++.-.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDP 89 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDP 89 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECC
Confidence 44567777789999999999999999999 99999998654
No 194
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=75.55 E-value=30 Score=33.59 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHH
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLH 92 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (436)
+++...|+.|-..-++.+|..+.+. |..|.+++.+. ..........+.+ +....+ .-. .+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EE--s~~qi~~Ra~rlg--~~~~~l-----~l~-~e--------- 144 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEE--SPEQIKLRADRLG--ISTENL-----YLL-AE--------- 144 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCc--CHHHHHHHHHHcC--CCcccE-----EEE-cc---------
Confidence 5666678999999999999999998 89999999876 2222222233333 211100 000 00
Q ss_pred HHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch---------------------HHHHHHHcCCCeEEEec
Q 047445 93 AIVDESLKSSLKAVLIELCNPRALVIDLFCTQ---------------------AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 93 ~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~---------------------~~~~A~~~giP~v~~~~ 141 (436)
.... .+.+.++.. ++|+||.|..... -..+|+..+++++.+..
T Consensus 145 ----~~le-~I~~~i~~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 145 ----TNLE-DILASIEEL-KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred ----CcHH-HHHHHHHhc-CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 1122 344555667 9999999985321 11467888999877643
No 195
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=74.78 E-value=38 Score=33.55 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
.+++++++. +||++|.+.. ...+|+++|+|++.++.
T Consensus 361 e~~~~i~~~-~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 361 EVGDMIART-EPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHhh-CCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 566788888 9999999973 33578999999987643
No 196
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=74.34 E-value=9.3 Score=34.92 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=61.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCC---------ceEEecCCCCCCCCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDG---------LDVVDLPPVDVSAVT 81 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 81 (436)
.-+++.-.|+.|...-..+++...+++ |..|.+++... ......+.....+-. +.+........ ..
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e--~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~-~~- 98 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEE--SPEELLENARSFGWDLEVYIEKGKLAILDAFLSEK-GL- 98 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecC--CHHHHHHHHHHcCCCHHHHhhcCCEEEEEcccccc-cc-
Confidence 457777789999999999999999999 99999999988 333333434334411 11111111100 00
Q ss_pred CCCchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 82 RDDMPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
.. .............. .++++++.. +++.+|.|+...
T Consensus 99 ~~---~~~~~~~~~~~l~~-~I~~~~~~~-~~~~~ViDsi~~ 135 (260)
T COG0467 99 VS---IVVGDPLDLEELLD-RIREIVEKE-GADRVVIDSITE 135 (260)
T ss_pred cc---ccccCCccHHHHHH-HHHHHHHHh-CCCEEEEeCCch
Confidence 00 00000111222334 666777787 899999998663
No 197
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=74.22 E-value=16 Score=33.17 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||||+.-=-|. |..=+.+|+++|++. |+|+++.+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~--~~V~VvAP~~ 36 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL--ADVTVVAPDR 36 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC--CCEEEEeCCC
Confidence 46666654444 455588999999986 5899999887
No 198
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=74.15 E-value=55 Score=27.95 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=55.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCe--EEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVH--VRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~--Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
|||+|+..++. ..+..+..+|.++ +|+ +..+.+.. .....+......+ .....+..... ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~~--~~~~~~~~~~~~~--~~~~~~~~~~~--------~~- 63 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITNP--DKPRGRSRAIKNG--IPAQVADEKNF--------QP- 63 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEESS--TTTHHHHHHHHTT--HHEEEHHGGGS--------SS-
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEeccc--cccccccccccCC--CCEEeccccCC--------Cc-
Confidence 58888866655 5567777889988 887 55555544 1222233333322 22222111100 00
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCc-chHHHHHHHcCCCeEEEecc
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVIDLFC-TQAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~-~~~~~~A~~~giP~v~~~~~ 142 (436)
.....+ .+.+.++++ +||++|+-.+. .....+-+.....++-++++
T Consensus 64 ------~~~~~~-~~~~~l~~~-~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 64 ------RSENDE-ELLELLESL-NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ------HHHHHH-HHHHHHHHT-T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ------hHhhhh-HHHHHHHhh-ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 011222 566788888 99999887543 33335556666666766554
No 199
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=74.12 E-value=21 Score=31.97 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCcEEE-EcC-CcchHHHHHHHcCCCeEEEecchH
Q 047445 112 NPRALV-IDL-FCTQAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 112 ~pD~vI-~D~-~~~~~~~~A~~~giP~v~~~~~~~ 144 (436)
-||+++ .|. ..--++.=|.++|||+|.++-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 399887 554 334566789999999999887765
No 200
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.90 E-value=42 Score=31.68 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchh--HHHHHhhcCCCCceEEecCCCCCCCCCCCCchH
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASA--AQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV 87 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (436)
+.-|+|+-.-|.|-..-.-.||+.|.+. |+.|.++....+...+ .-+.+.++.+ +.++.- ..+.++
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRAaAiEQL~~w~er~g--v~vI~~---------~~G~Dp 206 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRAAAIEQLEVWGERLG--VPVISG---------KEGADP 206 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHHHHHHHHHHHHHHhC--CeEEcc---------CCCCCc
Confidence 4567788889999999999999999999 9999999998822221 1223444555 555542 223344
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDL 120 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~ 120 (436)
.+-.++++... .++ +.|+|++|.
T Consensus 207 AaVafDAi~~A--------kar--~~DvvliDT 229 (340)
T COG0552 207 AAVAFDAIQAA--------KAR--GIDVVLIDT 229 (340)
T ss_pred HHHHHHHHHHH--------HHc--CCCEEEEeC
Confidence 44333333222 112 899999995
No 201
>PRK14099 glycogen synthase; Provisional
Probab=73.80 E-value=5.4 Score=40.29 Aligned_cols=41 Identities=27% Similarity=0.130 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCC------CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASP------GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p------~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|++||||+++.- +-|=-.-.-+|.++|+++ ||+|.++.|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~-g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAH-GVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 367999999863 446666778899999999 99999999965
No 202
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=73.53 E-value=14 Score=32.24 Aligned_cols=60 Identities=13% Similarity=-0.075 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLP 73 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (436)
++.+|++.+.++-.|-.-..-++..|+.+ |++|+++.... ....+-+.+.+.. .+++.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~v--p~e~~v~~~~~~~--pd~v~lS 142 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDV--PIDTVVEKVKKEK--PLMLTGS 142 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCC--CHHHHHHHHHHcC--CCEEEEc
Confidence 45699999999999999999999999998 99999998776 3333444455544 4444444
No 203
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=73.32 E-value=35 Score=34.84 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.+++.+++. +||+||.+. ....+|+++|||++.++
T Consensus 353 el~~~i~~~-~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA-APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc-CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 566788888 999999876 34479999999998764
No 204
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.96 E-value=7.7 Score=30.48 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=33.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.|+++.+.+..-|-.-+..+|..|+++ ||+|.++-...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~~ 38 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDANV 38 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESSB
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCCC
Confidence 378999999999999999999999998 99999986654
No 205
>PRK11823 DNA repair protein RadA; Provisional
Probab=72.94 E-value=14 Score=36.88 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
-+++...|+.|-..-++.+|..+.++ |..|.+++.+. .........++++ +....+. -. .+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ee--s~~qi~~ra~rlg--~~~~~l~-----~~-~e-------- 142 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEE--SASQIKLRAERLG--LPSDNLY-----LL-AE-------- 142 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccc--cHHHHHHHHHHcC--CChhcEE-----Ee-CC--------
Confidence 35666778999999999999999988 99999999887 2122222234444 2111100 00 00
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch---------------------HHHHHHHcCCCeEEEe
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ---------------------AFEICSQLSIPTYSFV 140 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~---------------------~~~~A~~~giP~v~~~ 140 (436)
.... .+.+.+++. ++++||.|..... -..+|+..|++++.+.
T Consensus 143 -----~~l~-~i~~~i~~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 143 -----TNLE-AILATIEEE-KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred -----CCHH-HHHHHHHhh-CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 0112 344455566 9999999975321 0236788899988774
No 206
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=72.63 E-value=7.7 Score=33.68 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.+||++.-.++.|=..-...+++.|.++ ||+|+++.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 45678777777665444379999999999 99999999988
No 207
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=72.43 E-value=19 Score=31.23 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHH
Q 047445 23 HVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSS 102 (436)
Q Consensus 23 H~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (436)
++.-.+.+.+.+.++ |-+|.|+++.. ......+..++..+ -.+. ...-..+. -+...........+.......
T Consensus 41 ~L~~A~~~i~~i~~~-~g~iLfV~t~~-~~~~~v~~~a~~~~--~~~i--~~rw~~G~-LTN~~~~~~~~~~~~~~~~~~ 113 (193)
T cd01425 41 KLRLALNFIANIAAK-GGKILFVGTKP-QAQRAVKKFAERTG--SFYV--NGRWLGGT-LTNWKTIRKSIKRLKKLEKEK 113 (193)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEECCH-HHHHHHHHHHHHcC--Ceee--cCeecCCc-CCCHHHHHHHHHHHHHHHHHH
Confidence 445556666788887 89999999986 22223344444443 1111 11111122 222222222111111111002
Q ss_pred HHHHHHhc---C-CCcEEEEcC--CcchHHHHHHHcCCCeEEEecchH
Q 047445 103 LKAVLIEL---C-NPRALVIDL--FCTQAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 103 l~~ll~~~---~-~pD~vI~D~--~~~~~~~~A~~~giP~v~~~~~~~ 144 (436)
++..+..+ . .||+||.-. -...++.=|.++|||.|.+.-+.+
T Consensus 114 ~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 114 LEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 22222222 2 899998543 334566789999999999876653
No 208
>PRK05595 replicative DNA helicase; Provisional
Probab=71.90 E-value=42 Score=33.45 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHH-hcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLV-INHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~-~r~Gh~Vt~~~~~~ 49 (436)
=+++...|+.|-..-.+.+|..++ +. |+.|.|++.+.
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~-g~~vl~fSlEm 240 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALRE-GKSVAIFSLEM 240 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 466677899999999999998876 55 99999999886
No 209
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=71.89 E-value=44 Score=25.78 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHH
Q 047445 23 HVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSS 102 (436)
Q Consensus 23 H~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (436)
+-.-++.+++.|.+. |+++ ++ ++. ..++.++.| +.+..+.... + ..+ .
T Consensus 11 ~k~~~~~~~~~l~~~-G~~l-~a-T~g------T~~~l~~~g--i~~~~v~~~~--~------------------~~~-~ 58 (110)
T cd01424 11 DKPEAVEIAKRLAEL-GFKL-VA-TEG------TAKYLQEAG--IPVEVVNKVS--E------------------GRP-N 58 (110)
T ss_pred cHhHHHHHHHHHHHC-CCEE-EE-chH------HHHHHHHcC--CeEEEEeecC--C------------------Cch-h
Confidence 556788999999998 9888 34 444 445566655 5544433111 0 123 5
Q ss_pred HHHHHHhcCCCcEEEEcCCc-------chHHHHHHHcCCCeEE
Q 047445 103 LKAVLIELCNPRALVIDLFC-------TQAFEICSQLSIPTYS 138 (436)
Q Consensus 103 l~~ll~~~~~pD~vI~D~~~-------~~~~~~A~~~giP~v~ 138 (436)
+.+++++- ++|+||.-... +.-...|-..|||++.
T Consensus 59 i~~~i~~~-~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 59 IVDLIKNG-EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHHcC-CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 66677776 99999985322 3344689999999884
No 210
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.20 E-value=9.7 Score=34.28 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=54.1
Q ss_pred CCeEEEEecCCCC---CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcE
Q 047445 271 SDSVIFVAPGSGG---TLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGM 347 (436)
Q Consensus 271 ~~~vV~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv 347 (436)
+++.|.+..|+.. .++.+.+.++++.+.+.+.++++..+.... ....-+..........+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-----------------~~~~~~~~~~~~~~~~~ 166 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-----------------EKEIADQIAAGLQNPVI 166 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-----------------HHHHHHHHHTTHTTTTE
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-----------------HHHHHHHHHHhcccceE
Confidence 5577888888863 478888999999998887666544332110 00000011111111133
Q ss_pred Eeccc--CCh-hhhcCccCceeeeeccCcccHHHHHHcCCcEeec
Q 047445 348 VVPSW--APQ-VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAW 389 (436)
Q Consensus 348 ~v~~~--~pq-~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~ 389 (436)
.+..- +.+ ..++++++ ++|+. -.|.++=|.+.|+|+|++
T Consensus 167 ~~~~~~~l~e~~ali~~a~--~~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 167 NLAGKTSLRELAALISRAD--LVIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp EETTTS-HHHHHHHHHTSS--EEEEE-SSHHHHHHHHTT--EEEE
T ss_pred eecCCCCHHHHHHHHhcCC--EEEec-CChHHHHHHHHhCCEEEE
Confidence 34332 333 57899999 57776 457899999999999998
No 211
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=70.44 E-value=69 Score=31.98 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=62.8
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 13 VAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 13 il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
|++... .+.|-..-...|++.|+++ |++|..+-+..+..++.....+. + .....+. + .
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~g~d~~D~~~~~~~~--g--~~~~~ld--------~-----~--- 60 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKVGPDYIDPMFHTQAT--G--RPSRNLD--------S-----F--- 60 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEccCCCCCCHHHHHHHh--C--CchhhCC--------c-----c---
Confidence 455544 3579999999999999999 99999998765222222211111 1 1100000 0 0
Q ss_pred HHHHHHhhhHHHHHHHHhcC-CCcEEEEcCC---c---------chHHHHHHHcCCCeEEEecch
Q 047445 92 HAIVDESLKSSLKAVLIELC-NPRALVIDLF---C---------TQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~---~---------~~~~~~A~~~giP~v~~~~~~ 143 (436)
. .... .+++.+.++. +.|++|++-. . .....+|+.++.|++.+....
T Consensus 61 ~----~~~~-~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 61 F----MSEA-QIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred c----CCHH-HHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 0 0122 3444554443 7899997743 1 125589999999999988654
No 212
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=70.32 E-value=40 Score=34.34 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.++++|++. +||+|+.+. ....+|+++|||++.++
T Consensus 365 ei~~~I~~~-~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV-EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc-CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 566788888 999999987 34467899999998764
No 213
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=70.06 E-value=30 Score=27.36 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|+++.+.++-.|..-..-++..|+.. |++|+++....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 58999999999999999999999998 99999999865
No 214
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=69.80 E-value=13 Score=27.00 Aligned_cols=39 Identities=18% Similarity=-0.032 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..-+|++.++...|...+..+|+.|.++ |..|...-..-
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D~rG 53 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYDHRG 53 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEECCCc
Confidence 4679999999999999999999999998 98887655443
No 215
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=69.68 E-value=48 Score=32.73 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHH-hcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLV-INHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~-~r~Gh~Vt~~~~~~ 49 (436)
=+++...|+.|-..-.+.+|..++ +. |+.|.|++.+.
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlEm 233 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLEM 233 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 467777899999999999998887 56 99999999876
No 216
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=69.48 E-value=18 Score=35.80 Aligned_cols=149 Identities=12% Similarity=0.082 Sum_probs=77.0
Q ss_pred HhhhhcCCCCCeEEEEecCCCCCC------C----HHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCcc
Q 047445 262 CLAWLGKQPSDSVIFVAPGSGGTL------T----AEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQ 331 (436)
Q Consensus 262 l~~~l~~~~~~~vV~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (436)
+..|+...+.+++|.||.-..... + .+.+..+++.+.+.+.++++.---... + ..++ +.
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~-~------~~~~---dD- 292 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGI-D------SYNK---DD- 292 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCc-c------CCCC---ch-
Confidence 445665433456888886644211 1 123344556665668887766422100 0 0000 00
Q ss_pred CcCchhHHHhcCCC-c--EEecccCCh--hhhcCccCceeeeeccCcccHHHHHHcCCcEeeccccccchhHHHHHHhhh
Q 047445 332 AYLPEGFLQRTHGM-G--MVVPSWAPQ--VEILRHSSTGGFLSHCGWNSSLESICHGVPMIAWPLYAEQKMNAAMLTEET 406 (436)
Q Consensus 332 ~~lp~~~~~~~~~~-n--v~v~~~~pq--~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~P~~~DQ~~nA~~v~~~~ 406 (436)
......+.+..+.. + +...++-+. ..++++++ ++|.. =+-+..-|+..|||.+.++. |.....- +.+ +
T Consensus 293 ~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~d--l~ig~-RlHa~I~a~~~gvP~i~i~Y--~~K~~~~-~~~-l 365 (426)
T PRK10017 293 RMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACE--LTVGT-RLHSAIISMNFGTPAIAINY--EHKSAGI-MQQ-L 365 (426)
T ss_pred HHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCC--EEEEe-cchHHHHHHHcCCCEEEeee--hHHHHHH-HHH-c
Confidence 00112222333221 2 223234343 37899999 46653 34467889999999999996 4333332 334 4
Q ss_pred cce---eeecccccccccccccccc
Q 047445 407 RGG---RKASNRIGKESDRTGRDRE 428 (436)
Q Consensus 407 G~g---~~~~~~~~~~~~~~~~~~~ 428 (436)
|.. ++...++.+++..++.+..
T Consensus 366 g~~~~~~~~~~l~~~~Li~~v~~~~ 390 (426)
T PRK10017 366 GLPEMAIDIRHLLDGSLQAMVADTL 390 (426)
T ss_pred CCccEEechhhCCHHHHHHHHHHHH
Confidence 433 5666777777776665543
No 217
>PRK08506 replicative DNA helicase; Provisional
Probab=69.47 E-value=58 Score=32.78 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-.+.+|....+. |+.|.|++.+.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEM 230 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEM 230 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcC
Confidence 46777789999999999999999887 99999999887
No 218
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=69.41 E-value=25 Score=35.08 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++.-.|+.|-..-++.++..+.++ |+.|.|++.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EE 132 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEE 132 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcC
Confidence 35666678999999999999999998 99999999877
No 219
>PRK14098 glycogen synthase; Provisional
Probab=69.13 E-value=8.5 Score=38.92 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCEEEEEcCC------CCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASP------GLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p------~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.||||+++.- .-|=-.-.-+|.++|+++ ||+|.++.+..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~-g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEE-GFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 3899999863 446666788999999999 99999999965
No 220
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=68.89 E-value=44 Score=24.66 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHHH
Q 047445 27 LLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKAV 106 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 106 (436)
++.+++.|.+. |+++ ++|. . -.+++++.| +.+..+-... ..+ .+ .+.++
T Consensus 2 ~~~~~~~l~~l-G~~i-~AT~-g------Ta~~L~~~G--i~~~~~~~ki-----~~~--------------~~-~i~~~ 50 (90)
T smart00851 2 LVELAKRLAEL-GFEL-VATG-G------TAKFLREAG--LPVKTLHPKV-----HGG--------------IL-AILDL 50 (90)
T ss_pred HHHHHHHHHHC-CCEE-EEcc-H------HHHHHHHCC--CcceeccCCC-----CCC--------------CH-HHHHH
Confidence 46899999998 9888 3444 4 345566655 5432111100 000 11 34456
Q ss_pred HHhcCCCcEEEEcCCc---------chHHHHHHHcCCCeE
Q 047445 107 LIELCNPRALVIDLFC---------TQAFEICSQLSIPTY 137 (436)
Q Consensus 107 l~~~~~pD~vI~D~~~---------~~~~~~A~~~giP~v 137 (436)
++.- ++|+||.-... +.-..+|...+||++
T Consensus 51 i~~g-~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 51 IKNG-EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred hcCC-CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 6666 99999985421 122257888999975
No 221
>PHA02542 41 41 helicase; Provisional
Probab=68.57 E-value=42 Score=33.71 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-.+.+|....+. |+.|.|++-+.
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM 228 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEM 228 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccC
Confidence 46677789999999999999999887 99999999876
No 222
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=68.17 E-value=33 Score=29.92 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=56.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcC----CCCceEEecCCCCCCCCCCCCchH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSL----PDGLDVVDLPPVDVSAVTRDDMPV 87 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 87 (436)
-+++...|+.|-..-++.++....+. |..|.|++++. +...+..+..+.. -.++-+.... +
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~------------~- 78 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVF------------D- 78 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECC------------C-
Confidence 35666678999999999999999988 99999999986 4444444444322 1122222210 0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
..... .... .+.+++++. ++++||.|+...
T Consensus 79 ~~~~~----~~~~-~l~~~~~~~-~~~lvVIDSis~ 108 (209)
T TIGR02237 79 FDEQG----VAIQ-KTSKFIDRD-SASLVVVDSFTA 108 (209)
T ss_pred HHHHH----HHHH-HHHHHHhhc-CccEEEEeCcHH
Confidence 01111 1223 444566666 899999998554
No 223
>PRK06749 replicative DNA helicase; Provisional
Probab=67.86 E-value=24 Score=34.89 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
=|++...|+.|-..-.+.+|...++. |+.|.|++.+-
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEM 224 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEM 224 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeC
Confidence 46777789999999999999999987 99999999876
No 224
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.59 E-value=9.6 Score=31.08 Aligned_cols=41 Identities=27% Similarity=0.157 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++++||++.+.+.-||-.-..-+++.|+.. |.+|.....-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhC-CceEEecCCcC
Confidence 578999999999999999999999999998 99999887654
No 225
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=67.38 E-value=53 Score=32.84 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=62.5
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 12 HVAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 12 ~il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
+|++... .+.|-..-...|++.|+++ |++|..+-+..+...+.....+. + .....+. .. ..
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~Gpd~~d~~~~~~~~--g--~~~~~ld-----~~-~~------- 66 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKVGPDYIDPAYHTAAT--G--RPSRNLD-----SW-MM------- 66 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeecCCCcccHHHHHHHh--C--CCcccCC-----ce-eC-------
Confidence 4555544 4679999999999999999 99999998865222222111111 1 1111111 00 00
Q ss_pred HHHHHHHhhhHHHHHHHHhcC-CCcEEEEcCC------------cchHHHHHHHcCCCeEEEecch
Q 047445 91 LHAIVDESLKSSLKAVLIELC-NPRALVIDLF------------CTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~-~pD~vI~D~~------------~~~~~~~A~~~giP~v~~~~~~ 143 (436)
... .+++.++++. +.|++|++-. ......+|+.++.|++.+....
T Consensus 67 -------~~~-~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 67 -------GEE-LVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred -------CHH-HHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 011 3344444443 7899987532 1235589999999999887643
No 226
>PRK08760 replicative DNA helicase; Provisional
Probab=67.11 E-value=32 Score=34.61 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
=+++...|+.|-..-.+.+|...+.++|+.|.|++.+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 46777789999999999999988643389999999877
No 227
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=66.86 E-value=81 Score=31.27 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
.+++++++. +||++|.+.. ...+|+++|+|++.+
T Consensus 363 e~~~~l~~~-~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKEL-KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhc-CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 566788888 9999999975 358999999999865
No 228
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=66.70 E-value=14 Score=27.77 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCC-CCCCCchHHHHHHHHHHHhhhHHHHH
Q 047445 27 LLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSA-VTRDDMPVITRLHAIVDESLKSSLKA 105 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (436)
++.+|+.|.+. |++ +++++. -.+++++.| +....+-...... . +.+ +. .+.+
T Consensus 2 ~~~~a~~l~~l-G~~--i~AT~g------Ta~~L~~~G--i~~~~v~~~~~~~~~-~~g-~~--------------~i~~ 54 (95)
T PF02142_consen 2 IVPLAKRLAEL-GFE--IYATEG------TAKFLKEHG--IEVTEVVNKIGEGES-PDG-RV--------------QIMD 54 (95)
T ss_dssp HHHHHHHHHHT-TSE--EEEEHH------HHHHHHHTT----EEECCEEHSTG-G-GTH-CH--------------HHHH
T ss_pred HHHHHHHHHHC-CCE--EEEChH------HHHHHHHcC--CCceeeeeecccCcc-CCc-hh--------------HHHH
Confidence 57899999998 955 455555 556677777 6644433211101 0 000 00 3556
Q ss_pred HHHhcCCCcEEEEcCCcchH---------HHHHHHcCCCeE
Q 047445 106 VLIELCNPRALVIDLFCTQA---------FEICSQLSIPTY 137 (436)
Q Consensus 106 ll~~~~~pD~vI~D~~~~~~---------~~~A~~~giP~v 137 (436)
+++.- +.|+||........ ..+|...+||++
T Consensus 55 ~i~~~-~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 55 LIKNG-KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHTT-SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHcC-CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 78877 99999977533211 257888899875
No 229
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=66.62 E-value=60 Score=28.90 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHH
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
.++=|+++..|++|-.+-...|++.|.-. |++..++.-.. +++.......... +.+ |...+.
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~-g~~~~vFn~g~------yRR~~~~~~~~~~--------ff~--p~n~~~- 72 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWL-GVKTKVFNVGD------YRRKLSGAPQDAE--------FFD--PDNEEA- 72 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEEHHH------HHHHHHSS-S-GG--------GGS--TT-HHH-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc-CCCcceeeccc------ceecccccccccc--------cCC--CCChHH-
Confidence 35568888899999999999999999998 99999999887 6665544221111 101 222222
Q ss_pred HHHH-HHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch------HHHHHHHcCCCeEEEec
Q 047445 89 TRLH-AIVDESLKSSLKAVLIELCNPRALVIDLFCTQ------AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 89 ~~~~-~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~------~~~~A~~~giP~v~~~~ 141 (436)
..+. ......+. .+.+++..- .-++-|.|....- -.......|+..+++-+
T Consensus 73 ~~~R~~~a~~~l~-dl~~~l~~~-~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEs 130 (222)
T PF01591_consen 73 KKLREQIAKEALE-DLIEWLQEE-GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIES 130 (222)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHTS---SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHH-HHHHHHhcC-CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 2222 22223333 444555544 7799999975552 23466677888776644
No 230
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=66.42 E-value=38 Score=30.07 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCe-EEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVH-VRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~-Vt~~~~~~ 49 (436)
-|+|...|..|.......|.++|+++ ||. ++.+....
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~-~~K~~v~ii~de 40 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKER-GTKQSVRIIDDE 40 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhh-cccceEEEechh
Confidence 46777789999999999999999999 976 44444444
No 231
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=66.19 E-value=71 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=25.0
Q ss_pred HHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 105 AVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 105 ~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
+.+++. +||++|... .+..+|+++|||.+.+.
T Consensus 344 ~~~~~~-~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEY-RPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhc-CCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 345567 999999883 35689999999998754
No 232
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=66.05 E-value=83 Score=26.74 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=50.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
.|.+++..+.|-....+.+|-+-.-+ |.+|.++-.-.....--.....+.++ ++.+..... .+. ....+....
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~-G~rV~ivQFlKg~~~~GE~~~l~~l~-~~~~~~~g~-~f~---~~~~~~~~~- 77 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH-GMRVLIVQFLKGGRYSGELKALKKLP-NVEIERFGK-GFV---WRMNEEEED- 77 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT-T--EEEEESS--SS--HHHHHHGGGT---EEEE--T-T-------GGGHHHH-
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC-CCEEEEEEEecCCCCcCHHHHHHhCC-eEEEEEcCC-ccc---ccCCCcHHH-
Confidence 57788889999999888888777776 88888887654211111233445554 577776654 211 111111111
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
......... ..++.+.+- ++|+||-|-...
T Consensus 78 ~~~~~~~~~-~a~~~i~~~-~~dlvILDEi~~ 107 (172)
T PF02572_consen 78 RAAAREGLE-EAKEAISSG-EYDLVILDEINY 107 (172)
T ss_dssp HHHHHHHHH-HHHHHTT-T-T-SEEEEETHHH
T ss_pred HHHHHHHHH-HHHHHHhCC-CCCEEEEcchHH
Confidence 222222333 333444444 899999997443
No 233
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=65.88 E-value=19 Score=35.17 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=35.5
Q ss_pred EEEEEc-CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhh
Q 047445 12 HVAVLA-SPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLR 61 (436)
Q Consensus 12 ~il~~~-~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 61 (436)
+|++.. ..+.|-+.-.+.|.++|++| |++|.=+--.++..++.+-..+.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~r-g~~VqpfKvGPDYIDP~~H~~at 51 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRR-GLKVQPFKVGPDYIDPGYHTAAT 51 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhc-CCcccccccCCCccCchhhhHhh
Confidence 344444 34789999999999999999 99998777666555554444433
No 234
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=65.80 E-value=95 Score=31.05 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
.+.+++++. +||++|... ....+|+++|||++.+
T Consensus 386 e~~~~i~~~-~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 386 ELLKLLLEY-KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHhhc-CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 566788888 999999863 3457889999998864
No 235
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=65.70 E-value=38 Score=30.54 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCC-CeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHH
Q 047445 24 VVPLLEFAKRLVINHG-VHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSS 102 (436)
Q Consensus 24 ~~P~l~LA~~L~~r~G-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (436)
+.|..++..+|++. | .+|.++|+....-....+++.++.| ++...+......+ +.+ +. +.-++.
T Consensus 105 tt~~~A~~~AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G--~eV~~~~~~~~~~----~~~-ia-------~i~p~~ 169 (239)
T TIGR02990 105 VTPSSAAVDGLAAL-GVRRISLLTPYTPETSRPMAQYFAVRG--FEIVNFTCLGLTD----DRE-MA-------RISPDC 169 (239)
T ss_pred eCHHHHHHHHHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCC--cEEeeeeccCCCC----Cce-ee-------ecCHHH
Confidence 56888889999988 7 7888888877444445667777776 7766654322211 111 00 011113
Q ss_pred HHHHHHhcC--CCcEEEEcCCcchHH----HHHHHcCCCeEE
Q 047445 103 LKAVLIELC--NPRALVIDLFCTQAF----EICSQLSIPTYS 138 (436)
Q Consensus 103 l~~ll~~~~--~pD~vI~D~~~~~~~----~~A~~~giP~v~ 138 (436)
+.+.+++.. .+|.|+.--.....+ .+-+.+|+|++.
T Consensus 170 i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 170 IVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVT 211 (239)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEE
Confidence 333444332 788887553333222 355668999865
No 236
>PLN02470 acetolactate synthase
Probab=65.62 E-value=5.7 Score=41.21 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=22.9
Q ss_pred CceeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 363 STGGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 363 ~v~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
.++++++|.| .+++.+|.+.++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 3456788877 458899999999999995
No 237
>PRK05636 replicative DNA helicase; Provisional
Probab=65.34 E-value=46 Score=33.78 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-.+.+|...+.++|..|.|++.+-
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEM 304 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEM 304 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeC
Confidence 46777789999999999999887644488999998876
No 238
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=65.19 E-value=75 Score=31.23 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchh--HHHHHhhcCCCCceEEec
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASA--AQEKLLRSLPDGLDVVDL 72 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 72 (436)
+.-|+++-.-+.|-+.-+-.||+.|+++ |+.|.+++.....+++ .-+.+.+..+ +.|+..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~~--v~~f~~ 161 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQVG--VPFFGS 161 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHHcC--CceecC
Confidence 4567777888999999999999999998 9999999988733322 2334444554 666654
No 239
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=65.06 E-value=33 Score=30.87 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=26.0
Q ss_pred cCCCCEEEEEc-CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 7 KSSRPHVAVLA-SPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 7 ~~~~~~il~~~-~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+...++||++. +|- -=..-+-+....|.++ ||+|++++-..
T Consensus 7 ~~~~~~vL~v~aHPD-De~~g~ggtla~~~~~-G~~V~v~~lT~ 48 (237)
T COG2120 7 MLDPLRVLVVFAHPD-DEEIGCGGTLAKLAAR-GVEVTVVCLTL 48 (237)
T ss_pred cccCCcEEEEecCCc-chhhccHHHHHHHHHC-CCeEEEEEccC
Confidence 34456666665 442 2234455666667888 99999998654
No 240
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=65.04 E-value=19 Score=36.54 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=59.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCC---CCCCCCCCchH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVD---VSAVTRDDMPV 87 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 87 (436)
.-+++...|+.|...-+..++....++ |..|.+++.+. ......+..+.+| +++..+-... +....+....
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~--~~~~i~~~~~~~g--~~~~~~~~~g~l~i~~~~~~~~~- 347 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEE--SRAQLIRNARSWG--IDLEKMEEKGLLKIICARPESYG- 347 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC--CHHHHHHHHHHcC--CChHHHhhcCCceeecCCcccCC-
Confidence 456777788999999999999999888 99999999887 2223333444444 2221111000 0000011111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
...... .+.+.+++. ++|+||.|.++.
T Consensus 348 -------~~~~~~-~i~~~i~~~-~~~~vVIDslt~ 374 (509)
T PRK09302 348 -------LEDHLI-IIKREIEEF-KPSRVAIDPLSA 374 (509)
T ss_pred -------HHHHHH-HHHHHHHHc-CCCEEEEcCHHH
Confidence 112233 455677777 999999998654
No 241
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=64.82 E-value=64 Score=25.02 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHH
Q 047445 23 HVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSS 102 (436)
Q Consensus 23 H~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (436)
+=.-++.+|+.|.+. |+++ + +++. -.+++++.| +.+..+... +++ ..+ .
T Consensus 10 ~K~~~~~~a~~l~~~-G~~i-~-AT~g------Ta~~L~~~G--i~~~~v~~~------~~~-------------g~~-~ 58 (112)
T cd00532 10 VKAMLVDLAPKLSSD-GFPL-F-ATGG------TSRVLADAG--IPVRAVSKR------HED-------------GEP-T 58 (112)
T ss_pred cHHHHHHHHHHHHHC-CCEE-E-ECcH------HHHHHHHcC--CceEEEEec------CCC-------------CCc-H
Confidence 445688999999998 9887 3 4444 445566666 655443311 111 123 5
Q ss_pred HHHHHHh-cCCCcEEEE--cCCc--------chHHHHHHHcCCCeEE
Q 047445 103 LKAVLIE-LCNPRALVI--DLFC--------TQAFEICSQLSIPTYS 138 (436)
Q Consensus 103 l~~ll~~-~~~pD~vI~--D~~~--------~~~~~~A~~~giP~v~ 138 (436)
+.+++++ - ++|+||. +... +.-..+|-..+||++.
T Consensus 59 i~~~i~~~g-~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 59 VDAAIAEKG-KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHhCCC-CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 6678888 7 9999997 3222 1122588899999875
No 242
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=64.42 E-value=90 Score=26.56 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
--|.+++..+.|-..-.+.+|-+...+ |++|.++-.-......-....++.. ++.+.......... ....+ .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~--~~~~~---~ 77 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWE--TQNRE---A 77 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeec--CCCcH---H
Confidence 457788889999999999999999998 9999766322100000022233333 37777655321101 11111 1
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
-......... ..++.+.+- ++|+||-|-...
T Consensus 78 ~~~~~~~~~~-~a~~~l~~~-~~DlvVLDEi~~ 108 (173)
T TIGR00708 78 DTAIAKAAWQ-HAKEMLADP-ELDLVLLDELTY 108 (173)
T ss_pred HHHHHHHHHH-HHHHHHhcC-CCCEEEehhhHH
Confidence 1122333333 445566655 999999997543
No 243
>PRK07773 replicative DNA helicase; Validated
Probab=63.64 E-value=36 Score=37.34 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-.+.+|...+.++|..|.|++-+.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm 256 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM 256 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 37777789999999999999998755478999999877
No 244
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=63.53 E-value=31 Score=30.52 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLP 73 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (436)
++.+|++.+.++-.|-.-..-++..|+.+ |++|+++.... ....+-+.+.+.. -+++.+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~v--p~e~~v~~~~~~~--~~~V~lS 146 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMV--PIEKILEAAKEHK--ADIIGLS 146 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCC--CHHHHHHHHHHcC--CCEEEEc
Confidence 45799999999999999999999999998 99999999766 3333444445544 4444443
No 245
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=63.52 E-value=1e+02 Score=30.35 Aligned_cols=33 Identities=27% Similarity=0.188 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYS 138 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 138 (436)
.+.+.++.. +||++|..... ..+|+++|+|++.
T Consensus 347 e~~~~i~~~-~pDl~ig~s~~---~~~a~~~gip~~~ 379 (410)
T cd01968 347 ELKKLLKEK-KADLLVAGGKE---RYLALKLGIPFCD 379 (410)
T ss_pred HHHHHHhhc-CCCEEEECCcc---hhhHHhcCCCEEE
Confidence 455777888 99999998533 4889999999874
No 246
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=62.99 E-value=54 Score=33.38 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
.+++.+++. +||+||.+. ....+|+++|+|++.++.
T Consensus 355 ei~~~i~~~-~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAAL-EPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhc-CCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 566788888 999999987 345789999999987643
No 247
>PRK09165 replicative DNA helicase; Provisional
Probab=62.70 E-value=1.1e+02 Score=31.12 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhc--------------CCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVIN--------------HGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r--------------~Gh~Vt~~~~~~ 49 (436)
=+++...|+.|-..-.+.+|...+.+ .|..|.|++-+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM 270 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM 270 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC
Confidence 36777789999999999999888643 178899999887
No 248
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=62.56 E-value=40 Score=33.79 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCCCHHHH------------HHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPL------------LEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~------------l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+..|||+...|++=.+.|. ..||+++..+ |++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 4467888887777666654 5789999999 99999999776
No 249
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=62.40 E-value=1.1e+02 Score=30.87 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYS 138 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 138 (436)
.+.+++++. +||++|.. .....+|+++|||++-
T Consensus 384 e~~~~i~~~-~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEA-KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhc-CCCEEEec---CchhhhhhhcCCCEEE
Confidence 445667777 99999997 4455899999999873
No 250
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=62.39 E-value=71 Score=27.90 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=48.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
+||+++..+.-+- +.++.+++.+.+ +++|.++.+... ......++++.+ +.+..++.......
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~--~~~~~~~a~~~g--Ip~~~~~~~~~~~~--------- 65 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRP--DAYGLERAEAAG--IPTFVLDHKDFPSR--------- 65 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCc--cchHHHHHHHcC--CCEEEECccccCch---------
Confidence 5788888776433 446666676651 377877654431 112455666666 76666543221100
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDL 120 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~ 120 (436)
...-+ .+.+.++.+ +||++|+-.
T Consensus 66 ------~~~~~-~~~~~l~~~-~~D~iv~~~ 88 (200)
T PRK05647 66 ------EAFDA-ALVEALDAY-QPDLVVLAG 88 (200)
T ss_pred ------hHhHH-HHHHHHHHh-CcCEEEhHH
Confidence 00112 455678888 999998754
No 251
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.24 E-value=1e+02 Score=30.65 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.+.+.+++. +||++|.... ...+|+++|+|++.+.
T Consensus 368 e~~~~i~~~-~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE-PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc-CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 456677888 9999999874 4589999999998654
No 252
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=62.17 E-value=61 Score=29.85 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=53.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRL 91 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (436)
-|++...|+.|-..-...|++.|.+. |.+|.+++... .. ..... + .........
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~-~~~v~~i~~~~------~~--~~~~~--y---------------~~~~~Ek~~ 56 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK-GKEVVIISDDS------LG--IDRND--Y---------------ADSKKEKEA 56 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT-T--EEEE-THH------HH---TTSS--S-----------------GGGHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCEEEEEcccc------cc--cchhh--h---------------hchhhhHHH
Confidence 36777789999999999999999998 99999998555 21 11100 0 011111222
Q ss_pred HHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch-HH-----HHHHHcCCCeEEEecchHH
Q 047445 92 HAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ-AF-----EICSQLSIPTYSFVTTSIH 145 (436)
Q Consensus 92 ~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~-~~-----~~A~~~giP~v~~~~~~~~ 145 (436)
...+.. .+...+. +-++||.|...+. +. .+|+..+.+++.++.....
T Consensus 57 R~~l~s----~v~r~ls---~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 57 RGSLKS----AVERALS---KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HHHHHH----HHHHHHT---T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred HHHHHH----HHHHhhc---cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 222211 2223332 4589999976652 32 5999999998877765543
No 253
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=61.35 E-value=27 Score=33.02 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=31.9
Q ss_pred EEEEEc---CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLA---SPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~---~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-|+.+- .+|.|-+--.+.||++|++| |..|.++|=..
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~r-G~~~gvvSRGY 87 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQAR-GVRVGVVSRGY 87 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhc-CCeeEEEecCc
Confidence 455543 58999999999999999999 99999998766
No 254
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=61.26 E-value=40 Score=31.83 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=23.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|||+|+..+.. .+...++|.++ ||+|..+.+..
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~-~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELRED-NFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhC-CCcEEEEEcCC
Confidence 68888866654 35666778888 99998776644
No 255
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=60.69 E-value=78 Score=24.63 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=55.2
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHH
Q 047445 15 VLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAI 94 (436)
Q Consensus 15 ~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (436)
|++.... +-.-++.+|+.|.+. |+++ ++++. ..++.++.| +.+..+.... +. +...
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~-G~~i--~aT~g------Ta~~L~~~g--i~~~~v~~~~--~~-~~~~--------- 59 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKL-GYKL--YATEG------TADFLLENG--IPVTPVAWPS--EE-PQND--------- 59 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHC-CCEE--EEccH------HHHHHHHcC--CCceEeeecc--CC-CCCC---------
Confidence 4444433 456688999999998 9887 34444 445555655 4433332110 00 0000
Q ss_pred HHHhhhHHHHHHHHhcCCCcEEEEcCC---------cchHHHHHHHcCCCeE
Q 047445 95 VDESLKSSLKAVLIELCNPRALVIDLF---------CTQAFEICSQLSIPTY 137 (436)
Q Consensus 95 ~~~~~~~~l~~ll~~~~~pD~vI~D~~---------~~~~~~~A~~~giP~v 137 (436)
.+ .+.+++++- ++|+||.-.. .+.-...|-.+|||++
T Consensus 60 ----~~-~i~~~i~~~-~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 60 ----KP-SLRELLAEG-KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred ----ch-hHHHHHHcC-CceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 13 566677776 9999998432 2333468999999986
No 256
>PRK14098 glycogen synthase; Provisional
Probab=60.62 E-value=14 Score=37.26 Aligned_cols=77 Identities=8% Similarity=-0.064 Sum_probs=46.5
Q ss_pred CcEEecccCChh---hhcCccCceeeeecc---Cc-ccHHHHHHcCCcEeeccccc--cchhHHHHHHhhhcceeeeccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSHC---GW-NSSLESICHGVPMIAWPLYA--EQKMNAAMLTEETRGGRKASNR 415 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~HG---G~-~s~~eal~~GvP~l~~P~~~--DQ~~nA~~v~~~~G~g~~~~~~ 415 (436)
.++.+..+++.. .+++.+|+ |+.-. |+ .+.+||+++|+|.|+.-..+ |.-.+ ...+ -+.|.-....
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~-~~~G~l~~~~ 436 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSED-KGSGFIFHDY 436 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCC-CCceeEeCCC
Confidence 478777777763 68999996 55432 22 37789999999988876543 21110 0111 1344444455
Q ss_pred ccccccccccc
Q 047445 416 IGKESDRTGRD 426 (436)
Q Consensus 416 ~~~~~~~~~~~ 426 (436)
+++++.+++.+
T Consensus 437 d~~~la~ai~~ 447 (489)
T PRK14098 437 TPEALVAKLGE 447 (489)
T ss_pred CHHHHHHHHHH
Confidence 56666666654
No 257
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=60.51 E-value=17 Score=30.00 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=20.9
Q ss_pred eeeeccC------cccHHHHHHcCCcEeeccc
Q 047445 366 GFLSHCG------WNSSLESICHGVPMIAWPL 391 (436)
Q Consensus 366 ~~I~HGG------~~s~~eal~~GvP~l~~P~ 391 (436)
++++|+| .+.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 5777755 4588899999999999963
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.38 E-value=1e+02 Score=30.56 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+..|+|+..+|.|-..-+..||..|.+. |+.|.+++...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~ 133 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADT 133 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCC
Confidence 4567788888999999999999999998 99999999876
No 259
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.18 E-value=56 Score=31.56 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.++.=|+|+-.-+.|...-+..+|..++++ |+.|-+++...
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDT 139 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADT 139 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeecc
Confidence 345568888889999999999999999999 99999999988
No 260
>PRK10490 sensor protein KdpD; Provisional
Probab=60.13 E-value=46 Score=36.60 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..++||.|=..||-|-++-|+.-|++|+++ |++|.+-.-+.
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~-g~dvv~g~~e~ 62 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQ-GLDVLVGVVET 62 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhC-CCcEEEEEeeC
Confidence 346899999999999999999999999999 99998777655
No 261
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=59.71 E-value=1.4e+02 Score=27.08 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 19 PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 19 p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+|-|-+.-..+||..|++. |+.|..+=-..
T Consensus 11 GGvG~TTltAnLA~aL~~~-G~~VlaID~dp 40 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARL-GESVLAIDLDP 40 (243)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 6999999999999999999 99999887654
No 262
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=59.70 E-value=1.1e+02 Score=25.93 Aligned_cols=97 Identities=14% Similarity=0.116 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHH
Q 047445 26 PLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKA 105 (436)
Q Consensus 26 P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (436)
-+..|.+...++ |..|.++...+.......+.+.+.++ +++++......++ ....+ .+.+
T Consensus 36 l~~~l~~~~~~~-~~~ifllG~~~~~~~~~~~~l~~~yP-~l~ivg~~~g~f~-----------------~~~~~-~i~~ 95 (172)
T PF03808_consen 36 LFPDLLRRAEQR-GKRIFLLGGSEEVLEKAAANLRRRYP-GLRIVGYHHGYFD-----------------EEEEE-AIIN 95 (172)
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHCC-CeEEEEecCCCCC-----------------hhhHH-HHHH
Confidence 345666677777 89999999887222333444445555 6776654322110 11223 4555
Q ss_pred HHHhcCCCcEEEEcCCcc----hHHHHHHHcCCCeEEEecchH
Q 047445 106 VLIELCNPRALVIDLFCT----QAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 106 ll~~~~~pD~vI~D~~~~----~~~~~A~~~giP~v~~~~~~~ 144 (436)
.|.+. +||+|++-.-++ |.....+.++.+ +.++....
T Consensus 96 ~I~~~-~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~ 136 (172)
T PF03808_consen 96 RINAS-GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGA 136 (172)
T ss_pred HHHHc-CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECch
Confidence 66777 999999997666 455666777777 55555554
No 263
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=59.60 E-value=28 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=29.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 17 ASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 17 ~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.+|.|-+--...|++.|.++ |++|.++|-..
T Consensus 44 tvGGTGKTP~v~~L~~~L~~~-G~~~~IlSRGY 75 (326)
T PF02606_consen 44 TVGGTGKTPLVIWLARLLQAR-GYRPAILSRGY 75 (326)
T ss_pred ccCCCCchHHHHHHHHHHHhc-CCceEEEcCCC
Confidence 357999999999999999999 99999999876
No 264
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=59.38 E-value=29 Score=31.51 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=30.0
Q ss_pred ccCChhhhcCccCceeeeeccCcccHHHHHHcCCcEeec
Q 047445 351 SWAPQVEILRHSSTGGFLSHCGWNSSLESICHGVPMIAW 389 (436)
Q Consensus 351 ~~~pq~~lL~~~~v~~~I~HGG~~s~~eal~~GvP~l~~ 389 (436)
++=|+-++|+.+|- -++|--..|..+||.+.|+|+.++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 55689999999994 344556678889999999997654
No 265
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=59.29 E-value=48 Score=27.75 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=26.0
Q ss_pred Chhh-hcCccCceeeeeccCcccHHH---HHHcCCcEeeccc
Q 047445 354 PQVE-ILRHSSTGGFLSHCGWNSSLE---SICHGVPMIAWPL 391 (436)
Q Consensus 354 pq~~-lL~~~~v~~~I~HGG~~s~~e---al~~GvP~l~~P~ 391 (436)
+-+. +...+|. .++--||.||+.| ++.+++|+++++.
T Consensus 83 ~Rk~~m~~~sda-~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 83 ARNFILVRSADV-VVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred hHHHHHHHHCCE-EEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3344 4445663 6677788887654 6889999999985
No 266
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=58.97 E-value=1.1e+02 Score=27.24 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-++.++..+...+|+.|.|++.+.
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 35666778999999999999888775589999999887
No 267
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=58.79 E-value=46 Score=33.40 Aligned_cols=80 Identities=10% Similarity=-0.117 Sum_probs=45.1
Q ss_pred CcEEecccCChh---hhcCccCceeeeec---cCcc-cHHHHHHcCCcEeeccccc--cchhHHHHHHhhhcceeeeccc
Q 047445 345 MGMVVPSWAPQV---EILRHSSTGGFLSH---CGWN-SSLESICHGVPMIAWPLYA--EQKMNAAMLTEETRGGRKASNR 415 (436)
Q Consensus 345 ~nv~v~~~~pq~---~lL~~~~v~~~I~H---GG~~-s~~eal~~GvP~l~~P~~~--DQ~~nA~~v~~~~G~g~~~~~~ 415 (436)
.++.+....+.. .+++.+|+ ++.- -|+| +.+||+++|+|+|+....+ |.-.+..--.+ -+.|+-....
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~-~~~G~l~~~~ 422 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAE-SGTGFLFEEY 422 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCC-CCceEEeCCC
Confidence 356554444543 58899996 5532 2443 7889999999999876543 21111000001 1445555555
Q ss_pred cccccccccccc
Q 047445 416 IGKESDRTGRDR 427 (436)
Q Consensus 416 ~~~~~~~~~~~~ 427 (436)
+++++.+++.+.
T Consensus 423 d~~~la~~i~~~ 434 (473)
T TIGR02095 423 DPGALLAALSRA 434 (473)
T ss_pred CHHHHHHHHHHH
Confidence 666766666554
No 268
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=58.68 E-value=1.1e+02 Score=30.17 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=53.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH-hcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLV-INHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
.++.+..-+. ....+++.|. +. |-+|..+++.. .....+++..+..+ ... +-+. +.
T Consensus 289 k~vai~~~~~-----~~~~la~~l~~el-G~~v~~i~~~~-~~~~~~~~~~~~~~-~~~-~~v~-----d~--------- 345 (415)
T cd01977 289 KKVCIWTGGP-----KLWHWTKVIEDEL-GMQVVAMSSKF-GHQEDFEKVIARGG-EGT-IYID-----DP--------- 345 (415)
T ss_pred CEEEEECCCc-----hHHHHHHHHHHhc-CCEEEEEEEEe-ccHHHHHHHHHhcC-Cce-EEEe-----CC---------
Confidence 4566644332 2578888886 66 98888876542 11222344444332 011 1111 00
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
... .+.+.+++. +||+||.....- .+|+++|||++.+
T Consensus 346 --------~~~-e~~~~~~~~-~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 346 --------NEL-EFFEILEML-KPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred --------CHH-HHHHHHHhc-CCCEEEecCccc---hhhhhcCCCEEec
Confidence 001 233456777 999999886443 6999999999875
No 269
>PHA01630 putative group 1 glycosyl transferase
Probab=58.65 E-value=54 Score=31.19 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=28.6
Q ss_pred ccCChh---hhcCccCceeeee---ccC-cccHHHHHHcCCcEeecccc
Q 047445 351 SWAPQV---EILRHSSTGGFLS---HCG-WNSSLESICHGVPMIAWPLY 392 (436)
Q Consensus 351 ~~~pq~---~lL~~~~v~~~I~---HGG-~~s~~eal~~GvP~l~~P~~ 392 (436)
.++|+. .+++.+|+ |+. ..| ..++.||+++|+|+|+.-..
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 346643 57899996 442 233 55899999999999997654
No 270
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=58.64 E-value=21 Score=29.81 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=27.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 047445 274 VIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVV 308 (436)
Q Consensus 274 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 308 (436)
.+|+|+||.-......++..+++|.+.+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999877777778999999998875334443
No 271
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=58.36 E-value=63 Score=29.20 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHHH
Q 047445 27 LLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKAV 106 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 106 (436)
-..||+.|... ++.+++.|... ...+..+..+ . ..+. +. - ..+ .++++
T Consensus 14 ar~la~~L~~~-~~~~~~ss~t~-----~g~~l~~~~~-~---~~~~-----G~--l--------------~~e-~l~~~ 61 (257)
T COG2099 14 ARALAKKLAAA-PVDIILSSLTG-----YGAKLAEQIG-P---VRVG-----GF--L--------------GAE-GLAAF 61 (257)
T ss_pred HHHHHHHhhcc-CccEEEEEccc-----ccccchhccC-C---eeec-----Cc--C--------------CHH-HHHHH
Confidence 46899999998 87777777655 1333333322 1 0000 10 0 123 67789
Q ss_pred HHhcCCCcEEEEcCCcch------HHHHHHHcCCCeEEEec
Q 047445 107 LIELCNPRALVIDLFCTQ------AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 107 l~~~~~pD~vI~D~~~~~------~~~~A~~~giP~v~~~~ 141 (436)
+++. +.|+||=-.+-++ ++.+|+..|||++.+-.
T Consensus 62 l~e~-~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 62 LREE-GIDLLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred HHHc-CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 9988 9998885554443 34689999999998643
No 272
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=58.22 E-value=1e+02 Score=28.66 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCCcEEEE
Q 047445 102 SLKAVLIELCNPRALVI 118 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~ 118 (436)
.+.++|+++ +||+||+
T Consensus 112 ~L~~iIr~~-~PdvVvT 127 (283)
T TIGR03446 112 PLVRVIREF-RPHVITT 127 (283)
T ss_pred HHHHHHHHc-CCEEEEe
Confidence 677788888 9999986
No 273
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=57.63 E-value=47 Score=30.33 Aligned_cols=38 Identities=29% Similarity=0.479 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...++.|-..-++.+|..+...+|+.|.|++.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 46677788999999999999988654499999999877
No 274
>PRK11519 tyrosine kinase; Provisional
Probab=56.24 E-value=2.1e+02 Score=30.70 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++.++++++. |+-|-..-...||..|++. |++|.++-...
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dl 565 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDM 565 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3456666664 7999999999999999998 99999997653
No 275
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=56.23 E-value=2.1e+02 Score=28.27 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+++...|+.|-..-.+.+|..++.++|+.|.|++.+.
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm 234 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM 234 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC
Confidence 46777789999999999999998753389999999887
No 276
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=55.21 E-value=41 Score=31.84 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCcEEEE-cC-CcchHHHHHHHcCCCeEEEecchH
Q 047445 112 NPRALVI-DL-FCTQAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 112 ~pD~vI~-D~-~~~~~~~~A~~~giP~v~~~~~~~ 144 (436)
.||+||. |. ....++.=|.++|||.|.++-+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 6998884 54 444677889999999999877664
No 277
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=55.20 E-value=18 Score=32.94 Aligned_cols=40 Identities=20% Similarity=0.455 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+...++|+-.||.|-.+=..+||.+|.++ |+.|+|++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~e 143 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPD 143 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHH
Confidence 34579999999999999999999999987 99999999988
No 278
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=55.14 E-value=61 Score=30.38 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.|||+|+.+|..+ ...-++|.++ ||+|.-+.+..
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~-~~eivaV~Tqp 34 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEA-GHEIVAVVTQP 34 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhC-CCceEEEEeCC
Confidence 3789999888653 3445666677 89999888877
No 279
>PRK05920 aromatic acid decarboxylase; Validated
Probab=55.14 E-value=23 Score=31.08 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+||++.-.++.+ .+-...+.+.|.+. ||+|+++.+..
T Consensus 3 ~krIllgITGsia-a~ka~~lvr~L~~~-g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGASG-AIYGVRLLECLLAA-DYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHHC-CCEEEEEEChh
Confidence 3567777666554 47999999999998 99999999998
No 280
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=54.91 E-value=51 Score=29.16 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHH-HHHhcCCCeEEEEEcCCCCchhHHHHHhhcCC---------CCceEEecCCCCCCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAK-RLVINHGVHVRFLVITTNEASAAQEKLLRSLP---------DGLDVVDLPPVDVSA 79 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~-~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 79 (436)
..-+|+...|+.|-..-.+.++. .+++. |..|.+++... ......+..+..+ ..+.+..........
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee--~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEE--PPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecC--CHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 34578888999999999999775 55554 89999999887 3233333344444 124444333211100
Q ss_pred CCCCCchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 80 VTRDDMPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
. ... ...... .+.+.+++. +++.||.|.+..
T Consensus 96 --~--~~~-------~~~l~~-~i~~~i~~~-~~~~vVIDsls~ 126 (226)
T PF06745_consen 96 --S--PND-------LEELLS-KIREAIEEL-KPDRVVIDSLSA 126 (226)
T ss_dssp --T--SCC-------HHHHHH-HHHHHHHHH-TSSEEEEETHHH
T ss_pred --c--ccC-------HHHHHH-HHHHHHHhc-CCCEEEEECHHH
Confidence 0 001 111223 556677788 999999997443
No 281
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=54.84 E-value=85 Score=31.18 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
..|+.+..- -.....+++.|.+. |-+|..+.... .....+... .. .. ..
T Consensus 311 Gkrvai~~~-----~~~~~~l~~~l~el-Gm~v~~~~~~~------~~~~~~~~~---------~~---~~-~~------ 359 (432)
T TIGR01285 311 GKKVAIAAE-----PDLLAAWATFFTSM-GAQIVAAVTTT------GSPLLQKLP---------VE---TV-VI------ 359 (432)
T ss_pred CCEEEEEcC-----HHHHHHHHHHHHHC-CCEEEEEEeCC------CCHHHHhCC---------cC---cE-Ee------
Confidence 346666542 34668888888887 99988887766 111111111 00 00 00
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
.... .+.+++++. ++|++|.... +..+|+++|||++.+
T Consensus 360 -------~D~~-~l~~~i~~~-~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 360 -------GDLE-DLEDLACAA-GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred -------CCHH-HHHHHHhhc-CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 0112 456788888 9999998863 357999999999865
No 282
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=54.66 E-value=19 Score=30.88 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=30.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.||++...++.|=.+ ...+.+.|+++ |++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChh
Confidence 367777777766554 89999999998 99999999988
No 283
>PRK00784 cobyric acid synthase; Provisional
Probab=54.40 E-value=1.7e+02 Score=29.53 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.7
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEc
Q 047445 13 VAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVI 47 (436)
Q Consensus 13 il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~ 47 (436)
|++... ..-|-..-...|++.|+++ |++|..+-+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 555545 4679999999999999999 999998876
No 284
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=54.14 E-value=70 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.+.+++++. +||++|.+... ..+|+++|+|++.+.
T Consensus 362 el~~~i~~~-~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 362 DLESLAKEE-PVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHhhcc-CCCEEEECchh---HHHHHhcCCCEEEec
Confidence 456677777 99999999744 488999999998653
No 285
>PRK10867 signal recognition particle protein; Provisional
Probab=53.98 E-value=1.3e+02 Score=29.82 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.-|+|+..+|.|-..-...||..|+++.|+.|.+++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 3456667778999999999999999875489999999886
No 286
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=53.80 E-value=1.3e+02 Score=29.67 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=53.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCC--CchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTN--EASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
|+.+...+.. ...+++.|.+- |-+|..+++... .-.....+.....+ .. . ....+
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~el-Gmevv~~~t~~~~~~~~~~~~~~~~~~~--~~-----------v-~~~~d--- 343 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLES-GADVPYVGTAIPRTAWGAEDKRWLEMLG--VE-----------V-KYRAS--- 343 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHC-CCEEEEEecCCCCccccHHHHHHHHhcC--CC-----------c-eeccC---
Confidence 6777776665 78888899987 999998876641 00001111111111 00 0 01001
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
..+ .. +.+++. +||++|... .+..+|+++|||.+.+.
T Consensus 344 --------l~~-~~-~~l~~~-~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 344 --------LED-DM-EAVLEF-EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred --------HHH-HH-HHHhhC-CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 111 11 345667 999999884 34578999999998754
No 287
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=53.79 E-value=1.4e+02 Score=29.82 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
.+.+.+++. +||++|..... ..+|+++|||++.+
T Consensus 386 e~~~~i~~~-~pDllig~~~~---~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEKY-KPDIILTGIRE---GELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHhc-CCCEEEecCCc---chhhhhcCCCEEEc
Confidence 455677888 99999988643 47999999999875
No 288
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=53.55 E-value=22 Score=30.63 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=31.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHh-cCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVI-NHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~-r~Gh~Vt~~~~~~ 49 (436)
+||++.-.++.| .+-...++++|.+ . ||+|.++.++.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~-g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVG-EIETHLVISQA 39 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhc-CCeEEEEECHH
Confidence 368887778777 7779999999998 5 99999999998
No 289
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=53.36 E-value=24 Score=30.43 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||++.-.++.|=..-...+.++|.++ |++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchh
Confidence 67777777777666667999999998 99999999887
No 290
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=52.37 E-value=32 Score=32.40 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=31.5
Q ss_pred EEEEEc---CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLA---SPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~---~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-|+.+- .++.|-+--...||+.|+++ |++|.++|-..
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~-G~~~~IlSRGY 68 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDR-GLRVGVLSRGY 68 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 355544 58999999999999999999 99999999765
No 291
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=52.30 E-value=1.6e+02 Score=27.20 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCeEEEEEcCC
Q 047445 28 LEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 28 l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+|..+|.+. ||+|++++=..
T Consensus 12 ~~L~~~L~~~-gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKG-GHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhC-CCeEEEEEcCC
Confidence 3678889988 99999999665
No 292
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=52.26 E-value=1.8e+02 Score=27.40 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHH
Q 047445 24 VVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSL 103 (436)
Q Consensus 24 ~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (436)
..-+..|++.|.+. |..|.++.++. .........+..+ -....+. + ..... .+
T Consensus 193 ~e~~~~li~~l~~~-~~~ivl~G~~~--e~~~~~~i~~~~~--~~~~~l~-----g----------------~~sL~-el 245 (334)
T TIGR02195 193 HEHYAELAKRLIDQ-GYQVVLFGSAK--DHPAGNEIEALLP--GELRNLA-----G----------------ETSLD-EA 245 (334)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEEChh--hHHHHHHHHHhCC--cccccCC-----C----------------CCCHH-HH
Confidence 33678999999988 99999888876 1111222222221 0000000 0 00122 33
Q ss_pred HHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 104 KAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 104 ~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
..+++ +-|++|+. ..+...+|..+|+|.|.++.
T Consensus 246 ~ali~---~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 246 VDLIA---LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred HHHHH---hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 44555 56888866 34566899999999988755
No 293
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=51.68 E-value=1.9e+02 Score=26.41 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=53.6
Q ss_pred HHHHHHHHHh-cCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHH
Q 047445 27 LLEFAKRLVI-NHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKA 105 (436)
Q Consensus 27 ~l~LA~~L~~-r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (436)
.+..|-+|+. .+|-+|+.+|-.........+... ..|..- .+-+.+..+. +.+... ... .+.+
T Consensus 42 AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aL-AmGaDr-aili~d~~~~-----~~d~~~--------ta~-~Laa 105 (260)
T COG2086 42 AVEEALRLKEKGYGGEVTVLTMGPPQAEEALREAL-AMGADR-AILITDRAFA-----GADPLA--------TAK-ALAA 105 (260)
T ss_pred HHHHHHHhhccCCCceEEEEEecchhhHHHHHHHH-hcCCCe-EEEEeccccc-----CccHHH--------HHH-HHHH
Confidence 3566777888 347889999977522222222211 233111 1122211111 111111 111 4556
Q ss_pred HHHhcCCCcEEEEcC------CcchHHHHHHHcCCCeEEEec
Q 047445 106 VLIELCNPRALVIDL------FCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 106 ll~~~~~pD~vI~D~------~~~~~~~~A~~~giP~v~~~~ 141 (436)
.++.. ++|+|+... ....+..+|+.+|.|++.+..
T Consensus 106 ~~~~~-~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 106 AVKKI-GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHhc-CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 77788 999999752 233566899999999998654
No 294
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=51.64 E-value=27 Score=29.77 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCHHH-HHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVP-LLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P-~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|++.-.+ .||... ...+.+.|++++||+|.++.++.
T Consensus 2 i~~gitG-sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~ 38 (174)
T TIGR02699 2 IAWGITG-SGDKLPETYSIMKDVKNRYGDEIDVFLSKA 38 (174)
T ss_pred EEEEEEc-cHHHHHHHHHHHHHHHHhcCCEEEEEECHh
Confidence 3444444 377755 88999999865599999999998
No 295
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=51.13 E-value=98 Score=27.37 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=32.2
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.-+++...|+.|-..-.+.++.+..++ |..|.+++.+.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~ 58 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEE 58 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccC
Confidence 457777788999999999988877777 99999999876
No 296
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=50.52 E-value=20 Score=33.73 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=30.6
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++.+|+|+++-.++.| ..+|..|+++ ||+|+++.-..
T Consensus 2 ~~~~m~I~IiG~GaiG-----~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIG-----GFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHH-----HHHHHHHHHC-CCeEEEEEeCC
Confidence 3567899999888877 4578889998 99999998765
No 297
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=50.50 E-value=1.2e+02 Score=26.27 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=40.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCch--hHHHHHhhcCCCCceEEec
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEAS--AAQEKLLRSLPDGLDVVDL 72 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 72 (436)
-|+|+-..|-|-..-...||..++.+ |.+|.+++....... ..-+.+.+..+ +.++..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~--vp~~~~ 62 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILG--VPFYVA 62 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHT--EEEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhc--cccchh
Confidence 36677777999999999999999999 999999998762221 12344455555 666553
No 298
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=50.41 E-value=1e+02 Score=30.57 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=32.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH-hcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLV-INHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~-~r~Gh~Vt~~~~~~ 49 (436)
.-++++..+|.|-..-...||..|. ++ |..|.+++...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~ 138 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDL 138 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence 3566777789999999999999997 56 99999999886
No 299
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=50.07 E-value=44 Score=34.06 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=33.1
Q ss_pred CcEEecccCC--h-hhhcCccCceeeeecc---CcccHHHHHHcCCcEe
Q 047445 345 MGMVVPSWAP--Q-VEILRHSSTGGFLSHC---GWNSSLESICHGVPMI 387 (436)
Q Consensus 345 ~nv~v~~~~p--q-~~lL~~~~v~~~I~HG---G~~s~~eal~~GvP~l 387 (436)
..|.+.++.. + ..++.++.+ +|.=+ |.++..||+++|+|+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee
Confidence 3678888887 4 578888884 77655 6779999999999999
No 300
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=49.37 E-value=2e+02 Score=31.87 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.+.+++++. +||++|.... ...+|+++|||++-..
T Consensus 380 el~~~i~~~-~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 380 GLLRVMREK-MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred HHHHHHHhc-CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 455677888 9999998643 3478999999999654
No 301
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=48.66 E-value=65 Score=30.53 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=31.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.++..++.|-..-++.++...+++ |..|.|+.++.
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~ 93 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEH 93 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccc
Confidence 4455678999999999999999998 99999999887
No 302
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=48.48 E-value=24 Score=28.41 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhc
Q 047445 20 GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRS 62 (436)
Q Consensus 20 ~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~ 62 (436)
..-.+.-.+-++..|+++ ||+|++++++. ..++++-
T Consensus 9 ~Pvq~p~alYl~~~Lk~~-G~~v~Va~npA------A~kLl~v 44 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKK-GFEVVVAGNPA------ALKLLEV 44 (139)
T ss_dssp STTHHHHHHHHHHHHHCT-TEEEEEEE-HH------HHHHHHH
T ss_pred CcchhHHHHHHHHHHHhc-CCeEEEecCHH------HHhHhhh
Confidence 344566678899999998 99999999998 6666654
No 303
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=48.40 E-value=51 Score=27.02 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEe
Q 047445 271 SDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVR 309 (436)
Q Consensus 271 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 309 (436)
...+|++.+||......+.++.+++.+. .+.+++++..
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 4568999999997778888999998875 3577777654
No 304
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=48.16 E-value=2.6e+02 Score=27.12 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=56.7
Q ss_pred CCCEEEEEc-CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchH
Q 047445 9 SRPHVAVLA-SPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV 87 (436)
Q Consensus 9 ~~~~il~~~-~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (436)
..++|.++- .+..|. .+|+.|+++ ||+|++..... .. ...+.+... .+=+..+|..
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~-G~~V~~~d~~~-~~--~~~~~~~~a--DlVilavP~~------------ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLS-GYQVRILEQDD-WD--RAEDILADA--GMVIVSVPIH------------ 153 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHC-CCeEEEeCCCc-ch--hHHHHHhcC--CEEEEeCcHH------------
Confidence 446899887 777775 588999998 99999988643 10 122223222 2444444410
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch---HHHHHHHcCCCeEEEecc
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ---AFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~---~~~~A~~~giP~v~~~~~ 142 (436)
. ... .+.++.. + +++++|+|..+.- ...+++.+..+++..++.
T Consensus 154 --~-------~~~-~~~~l~~-l-~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~HPm 199 (374)
T PRK11199 154 --L-------TEE-VIARLPP-L-PEDCILVDLTSVKNAPLQAMLAAHSGPVLGLHPM 199 (374)
T ss_pred --H-------HHH-HHHHHhC-C-CCCcEEEECCCccHHHHHHHHHhCCCCEEeeCCC
Confidence 0 111 2334444 7 9999999986641 223444444465555443
No 305
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.78 E-value=76 Score=28.82 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCcEEEEcCCcch------HHHHHHHcCCCeEEEec
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQ------AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~------~~~~A~~~giP~v~~~~ 141 (436)
.+.+++++- ++++||=-.+-++ +..+|+.+|||++.+-.
T Consensus 57 ~l~~~l~~~-~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 57 GLAEFLREN-GIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred HHHHHHHhC-CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 566788877 9998884433332 33689999999998754
No 306
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.07 E-value=1.6e+02 Score=27.32 Aligned_cols=38 Identities=29% Similarity=0.585 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCC-CeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHG-VHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~G-h~Vt~~~~~~ 49 (436)
-|+|+...|.|-..-+..||..+..++| +.|.+++...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 5666666799999999999999986534 9999999877
No 307
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.86 E-value=1.7e+02 Score=28.60 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=36.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHG-VHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPP 74 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~G-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (436)
++||++-.+.-|+ .+|+-|+++ | ++|++++-.. .+ .++.....+.++++..++.
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~-~d~~V~iAdRs~-~~---~~~i~~~~~~~v~~~~vD~ 56 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQN-GDGEVTIADRSK-EK---CARIAELIGGKVEALQVDA 56 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhC-CCceEEEEeCCH-HH---HHHHHhhccccceeEEecc
Confidence 5788888876665 578899998 8 9999999774 11 3343343333566666653
No 308
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=46.60 E-value=2.3e+02 Score=26.86 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.-|+|+..+|.|-..-+..||..|+.+ |++|.++....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCc
Confidence 3456677778999999999999999998 99999998765
No 309
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=46.39 E-value=2.1e+02 Score=25.39 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHhcCCCcEEEEcCCcchHH---HHHHHcCCCeEE
Q 047445 106 VLIELCNPRALVIDLFCTQAF---EICSQLSIPTYS 138 (436)
Q Consensus 106 ll~~~~~pD~vI~D~~~~~~~---~~A~~~giP~v~ 138 (436)
.+++. ..|+||-|.+-+... .+++..|+|++.
T Consensus 173 ~L~~~-gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 173 ELAEQ-GADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred HHHhc-CCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 44455 999999998777443 589999999874
No 310
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=45.75 E-value=28 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||++.-.++.|-.. ...+.+.|+++ |++|.++.++.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~-g~~V~vv~T~~ 36 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEA-GVEVHLVISDW 36 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHC-CCEEEEEECcc
Confidence 35555566655544 48899999998 99999999998
No 311
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=45.74 E-value=1.7e+02 Score=29.20 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
.+.+.+++. +||++|.... +..+|+++|||++.+
T Consensus 378 e~~~~i~~~-~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKL-KPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhc-CCCEEEEcCc---chhhhhhcCCCeEec
Confidence 345667777 9999998763 457999999999864
No 312
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=45.73 E-value=1.3e+02 Score=27.33 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=54.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
++|+++..-+-| ..||+.|.++ |+.|+.-+... +.. .+..+ ..... +. - .
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~-g~~v~~Svat~------~g~-~~~~~--~~v~~-------G~--l--~---- 52 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAA-GVDIVLSLAGR------TGG-PADLP--GPVRV-------GG--F--G---- 52 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhC-CCeEEEEEccC------CCC-cccCC--ceEEE-------CC--C--C----
Confidence 456666544443 4789999998 99888777665 222 11111 11110 10 0 0
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcch------HHHHHHHcCCCeEEEec
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQ------AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~------~~~~A~~~giP~v~~~~ 141 (436)
... .+.+++++. ++++||=-.+-++ +..+|+.+|||++.+..
T Consensus 53 -------~~~-~l~~~l~~~-~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 -------GAE-GLAAYLREE-GIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred -------CHH-HHHHHHHHC-CCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 112 566788877 9998773333332 33689999999998754
No 313
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=45.58 E-value=1.9e+02 Score=26.89 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCch
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMP 86 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (436)
.+++||+++..+.-+. +.+|.++..+.. +++|..+.+... ....++++.+ +.+..++.... .
T Consensus 87 ~~~~ri~vl~Sg~gsn---l~al~~~~~~~~~~~~i~~visn~~----~~~~lA~~~g--Ip~~~~~~~~~-~------- 149 (286)
T PRK06027 87 AERKRVVILVSKEDHC---LGDLLWRWRSGELPVEIAAVISNHD----DLRSLVERFG--IPFHHVPVTKE-T------- 149 (286)
T ss_pred ccCcEEEEEEcCCCCC---HHHHHHHHHcCCCCcEEEEEEEcCh----hHHHHHHHhC--CCEEEeccCcc-c-------
Confidence 3568999998887444 445555554421 578888776551 2445567766 77766553210 0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC
Q 047445 87 VITRLHAIVDESLKSSLKAVLIELCNPRALVIDL 120 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~ 120 (436)
+......+.++++++ +||++|.-.
T Consensus 150 ---------~~~~~~~~~~~l~~~-~~Dlivlag 173 (286)
T PRK06027 150 ---------KAEAEARLLELIDEY-QPDLVVLAR 173 (286)
T ss_pred ---------cchhHHHHHHHHHHh-CCCEEEEec
Confidence 001111455678888 999999764
No 314
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=45.47 E-value=43 Score=34.56 Aligned_cols=26 Identities=8% Similarity=0.230 Sum_probs=21.0
Q ss_pred eeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 365 GGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 365 ~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
+++++|.| .+++.+|...++|+|++-
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 35777766 458999999999999995
No 315
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=45.47 E-value=1.6e+02 Score=25.91 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=34.5
Q ss_pred hhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEE
Q 047445 259 DEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFI 305 (436)
Q Consensus 259 ~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 305 (436)
.+.+.+|+... .+.+.||=+-|...-.....+..-++|++.+..+.
T Consensus 21 ~~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 21 LPFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred hHHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 35566667665 56899999988766666677788899999887654
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=45.29 E-value=2.5e+02 Score=25.85 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-|+|+..+|-|-..-...||..|++. |++|.+++...
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~ 110 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDT 110 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence 45666677999999999999999998 99999999775
No 317
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=44.50 E-value=67 Score=31.08 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=21.4
Q ss_pred CCcEEEEc--CCcchHHHHHHHcCCCeEEEecch
Q 047445 112 NPRALVID--LFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 112 ~pD~vI~D--~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
+.-+|-+. +...+++..|+++|||+.++.+..
T Consensus 114 ~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~ 147 (457)
T KOG1250|consen 114 KAGVIASSAGNHAQAAAYAARKLGIPATIVMPVA 147 (457)
T ss_pred cCceEEecCccHHHHHHHHHHhcCCceEEEecCC
Confidence 33444433 355566689999999998876654
No 318
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=44.47 E-value=70 Score=30.31 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=31.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++++..++.|-..-++.++.+.+++ |..|.|+..+.
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~ 93 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEH 93 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccc
Confidence 5566678999999999999999998 99999998876
No 319
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=44.07 E-value=47 Score=28.84 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.++|++.++. ++-|-..-...||..|+++ |++|.++-...
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D~ 56 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGDM 56 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCC
Confidence 3466666654 5889999999999999998 99999886554
No 320
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=43.85 E-value=2.1e+02 Score=24.55 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=29.4
Q ss_pred hhcCccCceeeeeccCcccHHH-------------HHHc--CCcEeeccc----cccc---hhHHHHHHhhhcce
Q 047445 357 EILRHSSTGGFLSHCGWNSSLE-------------SICH--GVPMIAWPL----YAEQ---KMNAAMLTEETRGG 409 (436)
Q Consensus 357 ~lL~~~~v~~~I~HGG~~s~~e-------------al~~--GvP~l~~P~----~~DQ---~~nA~~v~~~~G~g 409 (436)
++...+|+ .+|.-+=+||+.- +++. ++|+++.|- .... ..|..++.+ .|+-
T Consensus 73 ~l~~~aD~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ 145 (182)
T PRK07313 73 ELAKRADL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQ 145 (182)
T ss_pred ccccccCE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCE
Confidence 44456665 6677666664332 2445 899999995 2233 345555644 4543
No 321
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.62 E-value=1.6e+02 Score=27.93 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=60.5
Q ss_pred CEEEEEcCCCC-----CCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCc
Q 047445 11 PHVAVLASPGL-----GHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDM 85 (436)
Q Consensus 11 ~~il~~~~p~~-----GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (436)
..|+|.|..+. --..-+..|++.|.++ |..|.++.+.. .....++..+.++.... +. + .
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~-~~~Vvl~g~~~--e~e~~~~i~~~~~~~~~---l~-----~--k--- 239 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAK-GYQVVLFGGPD--EEERAEEIAKGLPNAVI---LA-----G--K--- 239 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHC-CCEEEEecChH--HHHHHHHHHHhcCCccc---cC-----C--C---
Confidence 56777766233 2345789999999999 98888888875 33333344443330110 11 0 0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecch
Q 047445 86 PVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
.... .+..+++ ..|++|+- .++...+|..+|.|.|.+....
T Consensus 240 -----------~sL~-e~~~li~---~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 240 -----------TSLE-ELAALIA---GADLVIGN--DSGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -----------CCHH-HHHHHHh---cCCEEEcc--CChHHHHHHHcCCCEEEEECCC
Confidence 0122 3344554 66888865 3455689999999999987544
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.54 E-value=2e+02 Score=28.05 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-++|+...|.|-..-+..||..+.++ |++|.+++...
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDt 244 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDT 244 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCc
Confidence 34555556999999999999999988 99999999876
No 323
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=43.48 E-value=1.9e+02 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-eEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGV-HVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh-~Vt~~~~~~ 49 (436)
++.||+++-.++.| ..+|+.|++. |+ +++++-...
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHc-CCCEEEEEcCCc
Confidence 45789999999887 6789999998 98 666665543
No 324
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=43.21 E-value=1.1e+02 Score=26.70 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=31.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+++..+..|-..-++.-++....+ |-.|.++++..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 3444556889999999999999999 99999999987
No 325
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=43.08 E-value=1e+02 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=32.2
Q ss_pred EEEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+|++++. ++-|...-..+|+.+|+++ |+.|.++-...
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecCc
Confidence 5667776 4889999999999999999 99999998876
No 326
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=43.03 E-value=65 Score=28.83 Aligned_cols=104 Identities=17% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCC-CC---HHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCc
Q 047445 10 RPHVAVLASPGL-GH---VVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDM 85 (436)
Q Consensus 10 ~~~il~~~~p~~-GH---~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (436)
+..|+|.+..+. .- ..-+..|++.|.++ |..|.++.++............+..... +..+.. . .
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~-~~~vvl~g~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~-~ 172 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKER-GYRVVLLGGPEEQEKEIADQIAAGLQNP--VINLAG--------K-T 172 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCC-T-EEEE--SSHHHHHHHHHHHHTTHTTT--TEEETT--------T-S
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhh-CceEEEEccchHHHHHHHHHHHHhcccc--eEeecC--------C-C
Confidence 455666665433 22 23369999999998 8888888887710011111111211100 121110 0 0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecch
Q 047445 86 PVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
... .+..+++ .-|++|+- ..+...+|..+|+|.+.++...
T Consensus 173 ------------~l~-e~~ali~---~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 173 ------------SLR-ELAALIS---RADLVIGN--DTGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -------------HH-HHHHHHH---TSSEEEEE--SSHHHHHHHHTT--EEEEESSS
T ss_pred ------------CHH-HHHHHHh---cCCEEEec--CChHHHHHHHHhCCEEEEecCC
Confidence 112 2334555 66888865 3455689999999999987544
No 327
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=42.31 E-value=18 Score=37.35 Aligned_cols=25 Identities=8% Similarity=0.332 Sum_probs=20.6
Q ss_pred eeeeccCc------ccHHHHHHcCCcEeecc
Q 047445 366 GFLSHCGW------NSSLESICHGVPMIAWP 390 (436)
Q Consensus 366 ~~I~HGG~------~s~~eal~~GvP~l~~P 390 (436)
++++|.|- +++.+|...++|+|++-
T Consensus 81 v~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 81 VVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred EEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 57778774 47899999999999984
No 328
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.27 E-value=58 Score=30.93 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCcEEEEcCCcch------H----HHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQ------A----FEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~------~----~~~A~~~giP~v~~~ 140 (436)
.+.++++++ +||++|+...+-+ + ..+.++++||.+.-.
T Consensus 71 ~i~~mv~~~-~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 71 KILEMVKKL-KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHhc-CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 566788888 9999999975532 1 136678999988643
No 329
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=41.98 E-value=2.2e+02 Score=24.33 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=59.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
=-|.+.+..+.|-..-.+.+|-+-.-+ |.+|.++-.-......-.....+..+ ++.+........... .+..+ .
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~-G~rV~iiQFlKg~~~~GE~~~l~~~~-~v~~~~~g~~~~~~~-~~~~~---~ 95 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQ-GTPVLIVQFLKGGIQQGPDRPIQLGQ-NLDWVRCDLPRCLDT-PHLDE---S 95 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcC-CCEEEEEEEecCCCcchHHHHHHhCC-CcEEEECCCCCeeeC-CCcCH---H
Confidence 368888889999999999888777776 88998887543110001222334444 677776553211111 11110 1
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFCT 123 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~ 123 (436)
-......... ..++.+.+- ++|+||-|-...
T Consensus 96 ~~~~~~~~~~-~a~~~l~~~-~~dlvVLDEi~~ 126 (178)
T PRK07414 96 EKKALQELWQ-YTQAVVDEG-RYSLVVLDELSL 126 (178)
T ss_pred HHHHHHHHHH-HHHHHHhCC-CCCEEEEehhHH
Confidence 1122223333 445566665 999999997444
No 330
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=41.98 E-value=1.4e+02 Score=30.32 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.-+|+...|+.|...-.+.++..-.+++|..|.|++.+.
T Consensus 32 s~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 32 RPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 347778889999999999998755443389999999988
No 331
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=41.82 E-value=3.7e+02 Score=26.77 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=32.2
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchh
Q 047445 12 HVAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASA 54 (436)
Q Consensus 12 ~il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~ 54 (436)
+|++... .+.|-+.-.+.|++.|+++ |.+|..+-+..+..++
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~-g~~v~~~K~Gpd~iD~ 45 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDA-GYAVQPAKAGPDFIDP 45 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHC-CCeeEEEeeCCCCCCH
Confidence 3555554 4779999999999999999 9999888876644333
No 332
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=41.59 E-value=75 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.057 Sum_probs=21.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 047445 274 VIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVV 308 (436)
Q Consensus 274 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 308 (436)
.|.|-+||.+ +....+++...|+..+..+-..+
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V 34 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRV 34 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEE
Confidence 3555566643 67777888888888886655444
No 333
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=41.55 E-value=1.7e+02 Score=22.95 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCC-------------chhHHHH---HhhcCCC-CceEEecCCCCCCCCCCCCchHH
Q 047445 26 PLLEFAKRLVINHGVHVRFLVITTNE-------------ASAAQEK---LLRSLPD-GLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 26 P~l~LA~~L~~r~Gh~Vt~~~~~~~~-------------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
-+-.+...+.++ |++|++++-.... ...+.++ ..+.+|. ++.+..+++... ..
T Consensus 13 ~~gg~i~~~~~~-g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~----~~----- 82 (128)
T PF02585_consen 13 GCGGTIAKLAEA-GHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQL----PG----- 82 (128)
T ss_dssp HHHHHHHHHHHT-T-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSC----TC-----
T ss_pred hhHHHHHHHHhc-CCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCc----cc-----
Confidence 444556678888 9999888754311 1112222 2233552 234444443221 11
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVIDL 120 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~ 120 (436)
........ .+.++++++ +||+|++-.
T Consensus 83 ----~~~~~~~~-~l~~~i~~~-~p~~V~t~~ 108 (128)
T PF02585_consen 83 ----WSWEELVR-DLEDLIREF-RPDVVFTPD 108 (128)
T ss_dssp ----HHHHHHHH-HHHHHHHHH--ESEEEEE-
T ss_pred ----ccHHHHHH-HHHHHHHHc-CCCEEEECC
Confidence 11223344 677888898 999988653
No 334
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=41.54 E-value=2.2e+02 Score=24.11 Aligned_cols=99 Identities=21% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHH
Q 047445 25 VPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLK 104 (436)
Q Consensus 25 ~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 104 (436)
.-++..|+.|... |-+|+.++...+.... .......+|. =+.+.+........ .. ..... .+.
T Consensus 22 ~e~l~~A~~l~~~-~~~v~~v~~G~~~~~~-~~~~~~~~Ga-d~v~~~~~~~~~~~------~~-------~~~a~-~l~ 84 (181)
T cd01985 22 LEAVEAALRLKEY-GGEVTALVIGPPAAEV-ALREALAMGA-DKVLLVEDPALAGY------DP-------EATAK-ALA 84 (181)
T ss_pred HHHHHHHHHHhhc-CCeEEEEEECChHHHH-HHHHHHHhCC-CEEEEEecCcccCC------Ch-------HHHHH-HHH
Confidence 3677889998764 5678777765411111 1012223441 12233332211110 00 11222 455
Q ss_pred HHHHhcCCCcEEEEcCCcc---hHHHHHHHcCCCeEEEec
Q 047445 105 AVLIELCNPRALVIDLFCT---QAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 105 ~ll~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v~~~~ 141 (436)
+++++. +||+|+.-.... .+..+|.++|.|++.-++
T Consensus 85 ~~i~~~-~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 85 ALIKKE-KPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHh-CCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 677777 999999886555 345799999999886544
No 335
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=41.46 E-value=1.9e+02 Score=27.53 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHH
Q 047445 26 PLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKA 105 (436)
Q Consensus 26 P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (436)
-+..|++.|.++ |++|.+...+. .....++..+..+.... . ....+ . + ..... .+..
T Consensus 201 ~~a~l~~~l~~~-~~~vvl~Gg~~--e~~~~~~i~~~~~~~~~----~--~~~~l-~-g-----------~~sL~-el~a 257 (348)
T PRK10916 201 HYAELAQQLIDE-GYQVVLFGSAK--DHEAGNEILAALNTEQQ----A--WCRNL-A-G-----------ETQLE-QAVI 257 (348)
T ss_pred HHHHHHHHHHHC-CCeEEEEeCHH--hHHHHHHHHHhcccccc----c--ceeec-c-C-----------CCCHH-HHHH
Confidence 578999999887 99998887776 11112222222110000 0 00000 0 0 00122 3334
Q ss_pred HHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 106 VLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 106 ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
+++ +-|++|+. ..+...+|..+|+|.|.++.
T Consensus 258 li~---~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 258 LIA---ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHH---hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 555 56888876 35566899999999998765
No 336
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=41.18 E-value=2.6e+02 Score=24.90 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=28.5
Q ss_pred EEEEEc-CC-CCCCHHHHHHHHHHHHhcCCCeEEEEEcC
Q 047445 12 HVAVLA-SP-GLGHVVPLLEFAKRLVINHGVHVRFLVIT 48 (436)
Q Consensus 12 ~il~~~-~p-~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~ 48 (436)
+.+|++ .- +-|-..-...|+++|+++ |++|...-+-
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~-g~~~~~~KPV 40 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQ-GYSVAGYKPV 40 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhC-CCeeEEECce
Confidence 344444 33 669999999999999999 9999987654
No 337
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=41.13 E-value=32 Score=35.42 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=21.9
Q ss_pred ceeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 364 TGGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 364 v~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
++++++|.| .+++.+|.+.++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 336888877 458899999999999884
No 338
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=41.11 E-value=1.1e+02 Score=25.01 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCC--ceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHH
Q 047445 28 LEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDG--LDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKA 105 (436)
Q Consensus 28 l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (436)
..+.+.|+++ |+.+.++|... ........+..+-. +..+-... +. ..... ... .++.
T Consensus 83 ~~~L~~l~~~-~~~~~i~Sn~~---~~~~~~~l~~~~~~~~f~~i~~~~----~~-~~~Kp-----------~~~-~~~~ 141 (176)
T PF13419_consen 83 RELLERLKAK-GIPLVIVSNGS---RERIERVLERLGLDDYFDEIISSD----DV-GSRKP-----------DPD-AYRR 141 (176)
T ss_dssp HHHHHHHHHT-TSEEEEEESSE---HHHHHHHHHHTTHGGGCSEEEEGG----GS-SSSTT-----------SHH-HHHH
T ss_pred hhhhhhcccc-cceeEEeecCC---cccccccccccccccccccccccc----hh-hhhhh-----------HHH-HHHH
Confidence 4567788888 99999999886 12234455555511 11111110 10 11111 111 3334
Q ss_pred HHHhcC--CCcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 106 VLIELC--NPRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 106 ll~~~~--~pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
+++++. +-++++.|... ..+..|...|++.|.+
T Consensus 142 ~~~~~~~~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 142 ALEKLGIPPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHTSSGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHHcCCCcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 444443 44677777655 7789999999998753
No 339
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.63 E-value=2e+02 Score=23.33 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=34.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+|++-+..+-+|-.=-.-++..|+.+ |++|+.+....
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~-GfeVi~LG~~v 39 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVVNLGVLS 39 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHC-CCEEEECCCCC
Confidence 479999999999999999999999998 99999998866
No 340
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=40.52 E-value=65 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||++..-++.|-......+++.|+++ |.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 47888889999999999999999998 99999888765
No 341
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=40.43 E-value=3.5e+02 Score=27.57 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEE
Q 047445 105 AVLIELCNPRALVIDLFCTQAFEICSQLSIPTYS 138 (436)
Q Consensus 105 ~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~ 138 (436)
+.+++. +||++|.....- .+|+++|||++-
T Consensus 392 ~~l~~~-~~Dllig~s~~~---~~A~k~gIP~ld 421 (513)
T TIGR01861 392 EAMEML-KPDIILTGKRPG---EVSKKMRVPYLN 421 (513)
T ss_pred HHHHhc-CCCEEEecCccc---hhHhhcCCCEEE
Confidence 456777 999999987544 789999999865
No 342
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.42 E-value=46 Score=28.33 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHhcCCCcEEEEcCCcch--HHHHHHHcCCCeEEEe
Q 047445 106 VLIELCNPRALVIDLFCTQ--AFEICSQLSIPTYSFV 140 (436)
Q Consensus 106 ll~~~~~pD~vI~D~~~~~--~~~~A~~~giP~v~~~ 140 (436)
.+.++ +||+||....... ....-+..|||++.+.
T Consensus 64 ~ll~l-~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 64 LIVAL-KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHhcc-CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 44456 9999998654332 3345578999988764
No 343
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=40.24 E-value=30 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=22.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|=+++..+.|.+ =..||+++..+ ||+|+++..+.
T Consensus 20 VR~ItN~SSG~~--G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 20 VRFITNRSSGKM--GAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp SEEEEES--SHH--HHHHHHHHHHT-T-EEEEEE-TT
T ss_pred ceEecCCCcCHH--HHHHHHHHHHC-CCEEEEEecCc
Confidence 334555566654 36789999999 99999999986
No 344
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=40.23 E-value=90 Score=26.91 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCc--EEEEcCCcc-hHHHHHHHcCCCeEEEecch
Q 047445 102 SLKAVLIELCNPR--ALVIDLFCT-QAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 102 ~l~~ll~~~~~pD--~vI~D~~~~-~~~~~A~~~giP~v~~~~~~ 143 (436)
.+.+++++. .++ ++|..++-. ++..+|+++++|.|.+.++.
T Consensus 48 ~l~~~i~~~-~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 48 QLEQLIEEL-KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHhC-CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 556677777 544 555444333 55679999999998886654
No 345
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=40.16 E-value=2.4e+02 Score=26.94 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 103 LKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 103 l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
+..+++ .-|++|+. ..+...+|..+|+|.|.++.
T Consensus 256 l~ali~---~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 256 LGALID---HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred HHHHHH---hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 334555 56888876 45566899999999998764
No 346
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=40.10 E-value=89 Score=30.57 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=23.8
Q ss_pred CCCCHHHHH---HHHHHHHhcCCCeEEEEEcCC
Q 047445 20 GLGHVVPLL---EFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 20 ~~GH~~P~l---~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-.||+.|++ .+|+-++.+ ||+|.++|...
T Consensus 15 HlGH~~~~l~ADv~aR~~r~~-G~~v~~~tGtD 46 (391)
T PF09334_consen 15 HLGHLYPYLAADVLARYLRLR-GHDVLFVTGTD 46 (391)
T ss_dssp BHHHHHHHHHHHHHHHHHHHT-T-EEEEEEEEE
T ss_pred CCChhHHHHHHHHHHHHHhhc-ccceeeEEecc
Confidence 349999877 688999998 99999999876
No 347
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.08 E-value=2.9e+02 Score=25.16 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCcEEEEcCCcch--HHHHHHHcCCCeEEEecch
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQ--AFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~--~~~~A~~~giP~v~~~~~~ 143 (436)
.+.+.+++- +..+|+++..... +-.+|+..|+|.+.+.+..
T Consensus 208 ~l~~~ik~~-~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 208 RLIDLAKEK-GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHc-CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 455566666 9999999976553 3369999999988876554
No 348
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=40.04 E-value=49 Score=29.98 Aligned_cols=88 Identities=10% Similarity=0.075 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHHHHH
Q 047445 29 EFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKAVLI 108 (436)
Q Consensus 29 ~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 108 (436)
.+|-+++++ ||+|.++-+..+...+..-+.++..| ++..+=+....+. .+-.-.+..|. +.... -.++++.
T Consensus 35 ~mAiefAeA-GHDVVLaePn~d~~dd~~w~~vedAG--V~vv~dD~eaa~~--~Ei~VLFTPFG---k~T~~-Iarei~~ 105 (340)
T COG4007 35 RMAIEFAEA-GHDVVLAEPNRDIMDDEHWKRVEDAG--VEVVSDDAEAAEH--GEIHVLFTPFG---KATFG-IAREILE 105 (340)
T ss_pred HHHHHHHHc-CCcEEeecCCccccCHHHHHHHHhcC--cEEecCchhhhhc--ceEEEEecccc---hhhHH-HHHHHHh
Confidence 578889999 99999999887665555555666666 6544322111110 00000111111 11222 3456777
Q ss_pred hcCCCcEEEEcCCcchHH
Q 047445 109 ELCNPRALVIDLFCTQAF 126 (436)
Q Consensus 109 ~~~~pD~vI~D~~~~~~~ 126 (436)
.+ +=-.||+..|+....
T Consensus 106 hv-pEgAVicnTCT~sp~ 122 (340)
T COG4007 106 HV-PEGAVICNTCTVSPV 122 (340)
T ss_pred hC-cCCcEecccccCchh
Confidence 77 777888887666543
No 349
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.12 E-value=2.3e+02 Score=25.77 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=32.1
Q ss_pred CcEEecccCC---hhhhcCccCceeeeec---cCccc-HHHHHHcCCcEeeccc
Q 047445 345 MGMVVPSWAP---QVEILRHSSTGGFLSH---CGWNS-SLESICHGVPMIAWPL 391 (436)
Q Consensus 345 ~nv~v~~~~p---q~~lL~~~~v~~~I~H---GG~~s-~~eal~~GvP~l~~P~ 391 (436)
.++....+++ ...+++.+++ ++.- .|.|. +.||+++|+|+|....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~ 308 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV 308 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC
Confidence 5677778888 2457777885 5554 35543 5999999999977654
No 350
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=38.76 E-value=1.7e+02 Score=26.77 Aligned_cols=88 Identities=23% Similarity=0.316 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHH
Q 047445 24 VVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSL 103 (436)
Q Consensus 24 ~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (436)
..-+..|++.|.++ |++|.++..+. .....+.+.+..+ .-....+. +. .... .+
T Consensus 139 ~~~~~~l~~~l~~~-~~~ivl~g~~~--e~~~~~~i~~~~~-~~~~~~~~-----~~----------------~~l~-e~ 192 (279)
T cd03789 139 AERFAALADRLLAR-GARVVLTGGPA--ERELAEEIAAALG-GPRVVNLA-----GK----------------TSLR-EL 192 (279)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEechh--hHHHHHHHHHhcC-CCccccCc-----CC----------------CCHH-HH
Confidence 35688999999998 99999988776 1112222222211 00000000 00 0112 33
Q ss_pred HHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 047445 104 KAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 104 ~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~ 142 (436)
..+++ +-|++|+-. .+...+|..+|+|.+.+...
T Consensus 193 ~~li~---~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 193 AALLA---RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHHH---hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 34554 568888653 35668999999999988654
No 351
>PRK12743 oxidoreductase; Provisional
Probab=38.57 E-value=2e+02 Score=25.79 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCeEEEEEcCC
Q 047445 28 LEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 28 l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..+|+.|.++ ||+|.++....
T Consensus 16 ~~~a~~l~~~-G~~V~~~~~~~ 36 (256)
T PRK12743 16 KACALLLAQQ-GFDIGITWHSD 36 (256)
T ss_pred HHHHHHHHHC-CCEEEEEeCCC
Confidence 6799999998 99998875433
No 352
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=38.52 E-value=76 Score=31.13 Aligned_cols=51 Identities=20% Similarity=0.079 Sum_probs=37.1
Q ss_pred HHhcCCCcEEecccCChhhhcCccC---ceeeeeccCcccHHHHHHcCCcEeecc
Q 047445 339 LQRTHGMGMVVPSWAPQVEILRHSS---TGGFLSHCGWNSSLESICHGVPMIAWP 390 (436)
Q Consensus 339 ~~~~~~~nv~v~~~~pq~~lL~~~~---v~~~I~HGG~~s~~eal~~GvP~l~~P 390 (436)
.+.++...=.+.+|-=+..+|..++ . ..+||||.-++-.|++.|.=+|+=.
T Consensus 457 Te~mkDGsdavsDwp~lnallntA~Gatw-vslHhGGGvgmG~s~h~G~viVaDG 510 (561)
T COG2987 457 TEAMKDGSDAVSDWPLLNALLNTASGATW-VSLHHGGGVGMGFSQHAGMVIVADG 510 (561)
T ss_pred hhcccCccchhhhhHHHHHHhhhccCCcE-EEEecCCcccccccccCceEEEecC
Confidence 3444444444558877888887543 3 4789999999999999998777543
No 353
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=38.40 E-value=49 Score=30.31 Aligned_cols=39 Identities=5% Similarity=0.077 Sum_probs=24.0
Q ss_pred eEEEEecCCCCCCC-HHHHHHHHHHHHh--CCCcEEEEEeCC
Q 047445 273 SVIFVAPGSGGTLT-AEQVIEMAWGLEQ--SKQRFIWVVRMP 311 (436)
Q Consensus 273 ~vV~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~ 311 (436)
.+++|||||..... ..-+..+-+.++. .+.++.|++++.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 48999999985543 3366677777766 377889998763
No 354
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=38.27 E-value=2.1e+02 Score=26.66 Aligned_cols=39 Identities=21% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
...|.++..++.|-..-+..|+..|.++ |+.|.++....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~ 72 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDP 72 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 3456666678999999999999999998 99999988764
No 355
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=37.96 E-value=2.1e+02 Score=25.47 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=32.9
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.-+++.-.++.|-....+.++..+.++ |..+.+++.+.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~ 62 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQL 62 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 357777888999999999999888888 99999999776
No 356
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=37.94 E-value=35 Score=35.26 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.9
Q ss_pred eeeeccC------cccHHHHHHcCCcEeecc
Q 047445 366 GFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 366 ~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
++++|.| .+++.+|...++|||++-
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 5777777 457899999999999995
No 357
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=37.53 E-value=12 Score=31.52 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=20.2
Q ss_pred eeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 365 GGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 365 ~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
+++++|.| .+++.+|...++|||++.
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 34566655 457889999999999995
No 358
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.28 E-value=62 Score=31.73 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+..||++.-.++. ..+-...+.+.|++. |++|.++.++.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~-g~~V~vv~T~~ 43 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKA-GADVRVVMTEA 43 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhC-CCEEEEEECHh
Confidence 4568888888776 566889999999998 99999999988
No 359
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=37.27 E-value=3e+02 Score=27.07 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHH
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVIT 89 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (436)
..|++++.-+ .-..++++.|.+- |-+|..+.++. ......++..+....+... -.+.
T Consensus 274 Gkrv~i~gd~-----~~~~~l~~~L~el-Gm~~v~~~t~~-~~~~~~~~~~~~l~~~~~v------------~~~~---- 330 (407)
T TIGR01279 274 GKKIFFFGDN-----LLELPLARFLKRC-GMEVVECGTPY-IHRRFHAAELALLEGGVRI------------VEQP---- 330 (407)
T ss_pred CCEEEEECCc-----hHHHHHHHHHHHC-CCEEEEecCCC-CChHHHHHHHhhcCCCCeE------------EeCC----
Confidence 3567765433 4567778888887 98888887765 1222223333333211110 0000
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC
Q 047445 90 RLHAIVDESLKSSLKAVLIELCNPRALVIDL 120 (436)
Q Consensus 90 ~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~ 120 (436)
... .+.+++++. +||++|...
T Consensus 331 --------d~~-~l~~~i~~~-~pDllig~~ 351 (407)
T TIGR01279 331 --------DFH-RQLQRIRAT-RPDLVVTGL 351 (407)
T ss_pred --------CHH-HHHHHHHhc-CCCEEecCc
Confidence 122 455778888 999999987
No 360
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=37.25 E-value=19 Score=31.73 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHH---
Q 047445 20 GLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVD--- 96 (436)
Q Consensus 20 ~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (436)
+..|+...+.+...++.| |=.+.|+++.. ..+...+..+.+.+ ++... .....++ -. +...+.....
T Consensus 90 T~~~Lr~A~~fVa~vA~r-~GiILFv~tn~-~~~~~ve~aA~r~~-gy~~~---~~w~~G~-lT---N~~~l~g~~~~~~ 159 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHR-GGIILFVGTNN-GFKDLVERAARRAG-GYSHN---RKWLGGL-LT---NARELFGALVRKF 159 (251)
T ss_pred HHHHHHHHHHHHHHHHhc-CCeEEEEecCc-chHHHHHHHHHHhc-Cceee---eeeccce-ee---cchhhcccccccc
Confidence 456888899999999999 88888888876 22333333344433 12111 1111122 11 1111111111
Q ss_pred HhhhHHHHHHHHhcCCCcEEEE-cCCcc-hHHHHHHHcCCCeEEEecchH
Q 047445 97 ESLKSSLKAVLIELCNPRALVI-DLFCT-QAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 97 ~~~~~~l~~ll~~~~~pD~vI~-D~~~~-~~~~~A~~~giP~v~~~~~~~ 144 (436)
...+ ...-++..+ .+||||+ |...- .++.=|.+++||.|.+.-+.+
T Consensus 160 ~~~p-d~~~f~~t~-~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 160 LSLP-DALCFLPTL-TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred cCCC-cceeecccC-CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 1122 222344455 8898885 54444 456788899999998876654
No 361
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=37.22 E-value=35 Score=33.95 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=37.6
Q ss_pred CcEEe-cccCC-h-hhhcCccCceeeeeccC--cccHHHHHHcCCcEeeccc
Q 047445 345 MGMVV-PSWAP-Q-VEILRHSSTGGFLSHCG--WNSSLESICHGVPMIAWPL 391 (436)
Q Consensus 345 ~nv~v-~~~~p-q-~~lL~~~~v~~~I~HGG--~~s~~eal~~GvP~l~~P~ 391 (436)
.|+++ ..+.+ + .+++..|++=+-|+||. ..++.||+.+|+|++..=.
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~ 379 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEE 379 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEec
Confidence 35554 46777 3 68999999988888876 6699999999999997654
No 362
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=37.14 E-value=4e+02 Score=27.24 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.+++++.+. +||++|.+.. +..+|+++|+|++.+.
T Consensus 428 ~l~~~l~~~-~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 428 HLRSLVFTE-PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHhhc-CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 566788888 9999998863 4589999999998753
No 363
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=37.05 E-value=1.5e+02 Score=23.02 Aligned_cols=36 Identities=25% Similarity=0.012 Sum_probs=32.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+|..+.++..|..-...++..|+++ |++|.++....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~-G~~v~~l~~~~ 37 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDN-GFEVIDLGVDV 37 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHC-CCEEEEcCCCC
Confidence 6778888999999999999999999 99999997654
No 364
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=37.01 E-value=65 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=32.7
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+++|+.+.. +|-|-..-.+.||..|+.+ |++|.++=...
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~-G~rVLlIDlDp 160 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQ-GYRVLAVDLDP 160 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhc-CCceEEEcCCC
Confidence 3566666664 7999999999999999998 99999885543
No 365
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.99 E-value=69 Score=27.30 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
...++|...+|.|-.+=..++|+++.++ |+.|.|++...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeecCc
Confidence 4579999999999999999999999998 99999998877
No 366
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=36.84 E-value=2e+02 Score=27.07 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=53.5
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCc--------hhHHHHHhhcCCCCceEEecCCCCCCCCCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEA--------SAAQEKLLRSLPDGLDVVDLPPVDVSAVTR 82 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
|||+|+..+. -.+...+.|.++ ||++..+.+..+.. ....++++++.+ +.+.... ..
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~--Ip~~~~~-----~~-- 65 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHG--IPVLQPE-----KL-- 65 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcC--CCEECcC-----CC--
Confidence 6788885443 346677788888 89988766543111 112344455544 4433211 11
Q ss_pred CCchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCc-chHHHHHHHcCCCeEEEecc
Q 047445 83 DDMPVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFC-TQAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~-~~~~~~A~~~giP~v~~~~~ 142 (436)
. .+ .+.+.++++ +||++|+=.+. .....+-+.....++-++++
T Consensus 66 ---~------------~~-~~~~~l~~~-~~Dliv~~~~~~iip~~il~~~~~g~iNiHps 109 (309)
T PRK00005 66 ---R------------DP-EFLAELAAL-NADVIVVVAYGQILPKAVLDIPRLGCINLHAS 109 (309)
T ss_pred ---C------------CH-HHHHHHHhc-CcCEEEEehhhcccCHHHHhcCCCCEEEEeCc
Confidence 0 11 344567788 99999986432 22223444444445555544
No 367
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=36.80 E-value=2.8e+02 Score=23.96 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=47.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCC--eEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGV--HVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh--~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
+||+++..+.-+- +..+.+.+.+. ++ +|.++.+.. ........+++.+ +.+..++......
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~-~l~~~I~~vi~~~--~~~~~~~~A~~~g--ip~~~~~~~~~~~--------- 63 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEG-KIPASVVLVISNK--PDAYGLERAAQAG--IPTFVLSLKDFPS--------- 63 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcC-CCCceEEEEEECC--ccchHHHHHHHcC--CCEEEECccccCc---------
Confidence 4677777655543 45666677765 55 676654443 1122345566666 6666544221110
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCC
Q 047445 89 TRLHAIVDESLKSSLKAVLIELCNPRALVIDLF 121 (436)
Q Consensus 89 ~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~ 121 (436)
+....+.+.++++++ ++|++|+-.+
T Consensus 64 -------~~~~~~~~~~~l~~~-~~D~iv~~~~ 88 (190)
T TIGR00639 64 -------REAFDQAIIEELRAH-EVDLVVLAGF 88 (190)
T ss_pred -------hhhhhHHHHHHHHhc-CCCEEEEeCc
Confidence 001111556788888 9999997653
No 368
>PRK07206 hypothetical protein; Provisional
Probab=36.79 E-value=1.3e+02 Score=29.39 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+++++-.... -..++++++++ |+++..++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~-G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKR-GIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHc-CCeEEEEEcCC
Confidence 5777765433 34688999998 99999888765
No 369
>PRK06988 putative formyltransferase; Provisional
Probab=36.63 E-value=2.1e+02 Score=26.97 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=53.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCch-----hHHHHHhhcCCCCceEEecCCCCCCCCCCCCc
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEAS-----AAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDM 85 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (436)
|||+|+..+. ..+...+.|.++ ||+|..+.+..+... ....+++.+.+ +.+.... ..
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~-~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~g--ip~~~~~-----~~----- 64 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLAR-GVDVALVVTHEDNPTENIWFGSVAAVAAEHG--IPVITPA-----DP----- 64 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhC-CCCEEEEEcCCCCCccCcCCCHHHHHHHHcC--CcEEccc-----cC-----
Confidence 6899986654 234556677778 999888777641111 12344555544 4443211 00
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc-hHHHHHHHcCCCeEEEecc
Q 047445 86 PVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT-QAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v~~~~~ 142 (436)
..+ .+.+.++++ +||++|+-.+.. ....+-......++-++++
T Consensus 65 ------------~~~-~~~~~l~~~-~~Dliv~~~~~~iip~~il~~~~~g~iNiHps 108 (312)
T PRK06988 65 ------------NDP-ELRAAVAAA-APDFIFSFYYRHMIPVDLLALAPRGAYNMHGS 108 (312)
T ss_pred ------------CCH-HHHHHHHhc-CCCEEEEehhccccCHHHHhcCCCCEEEeeCc
Confidence 011 344567788 999998765322 2223333333344544443
No 370
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.62 E-value=3.2e+02 Score=24.62 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchH---HHHHHHcCCCeEE
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQA---FEICSQLSIPTYS 138 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~---~~~A~~~giP~v~ 138 (436)
..+.+++.+++-++.+.|.-+.+. ..+|...|||++.
T Consensus 139 aM~~~m~~Lk~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 139 AMEKLMEALKERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 445566666577999999877753 3689999999875
No 371
>PRK08322 acetolactate synthase; Reviewed
Probab=36.10 E-value=33 Score=35.22 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=21.8
Q ss_pred ceeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 364 TGGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 364 v~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
.+++++|.| .+++.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 335777776 458999999999999985
No 372
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=36.09 E-value=46 Score=32.90 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.+.+++++. +||++|.... ...+|+++|||++.+.
T Consensus 360 e~~~~i~~~-~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL-KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh-CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 456677777 9999999875 4578999999997653
No 373
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.96 E-value=3.1e+02 Score=25.27 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..+++|+...+.|-..-+..|+..+..+ |+.|.+++...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~ 113 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH 113 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3688999999999999999999999988 99999999866
No 374
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.59 E-value=69 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=33.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|+|.+..=+|-|-..-...||..|+++ |++|.++--..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~-G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARR-GKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 568888889999999999999999999 99999886543
No 375
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.43 E-value=87 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLV 46 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~ 46 (436)
+++...++.|-..-...+|+.|++. |++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-GKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEC
Confidence 4566677899999999999999998 99998876
No 376
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.17 E-value=1.5e+02 Score=25.12 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHH-HhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCC------------------CCCC
Q 047445 22 GHVVPLLEFAKRL-VINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVS------------------AVTR 82 (436)
Q Consensus 22 GH~~P~l~LA~~L-~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 82 (436)
+.+.-.+..|+.| .+. |.+|.+.-... ...+-+..+ +..+.++....+ +. +
T Consensus 17 ~~~e~~v~~a~~~~~~~-g~dViIsRG~t------a~~lr~~~~--iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~-~ 86 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESE-GADVIISRGGT------AELLRKHVS--IPVVEIPISGFDILRALAKAKKYGPKIAVVGY-P 86 (176)
T ss_dssp --HHHHHHHHHHHHTTT-T-SEEEEEHHH------HHHHHCC-S--S-EEEE---HHHHHHHHHHCCCCTSEEEEEEE-S
T ss_pred ecHHHHHHHHHHhhHhc-CCeEEEECCHH------HHHHHHhCC--CCEEEECCCHhHHHHHHHHHHhcCCcEEEEec-c
Confidence 4667788899999 676 99998887765 333333332 455554432100 00 0
Q ss_pred CCchHHHHHHHHHH--------HhhhHHHHHHHHhcC--CCcEEEEcCCcchHHHHHHHcCCCeEEEecchHH
Q 047445 83 DDMPVITRLHAIVD--------ESLKSSLKAVLIELC--NPRALVIDLFCTQAFEICSQLSIPTYSFVTTSIH 145 (436)
Q Consensus 83 ~~~~~~~~~~~~~~--------~~~~~~l~~ll~~~~--~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 145 (436)
........+...+. .... .++..++++. ..|+||.+.. +..+|+++|+|++.+.++.-+
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~-e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEE-EIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHH-HHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred cccHHHHHHHHHhCCceEEEEECCHH-HHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 00111222222221 0112 3444555442 8999999963 358999999999988775543
No 377
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=35.16 E-value=3.2e+02 Score=24.11 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=53.6
Q ss_pred CCCCHHHHH---HHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHH
Q 047445 20 GLGHVVPLL---EFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVD 96 (436)
Q Consensus 20 ~~GH~~P~l---~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (436)
-.||+.+++ .+++.|+.+ |++|.+++.-.+...+.... +++.+ . . ......
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~-G~~V~~~~g~dd~g~ki~~~-A~~~g--~------------------~----p~e~~~ 88 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDL-GYKVRYVQNITDIDDKIIKR-AREEG--L------------------S----WKEVAD 88 (213)
T ss_pred ccccchhHHHHHHHHHHHHhc-CCeeEEEeecCCCCCHHHHH-HHHcC--C------------------C----HHHHHH
Confidence 559998876 478889888 99999999877443332222 22211 1 1 112223
Q ss_pred HhhhHHHHHHHHhcC--CCcEEEEcCCcchHHHHHHHcCCCe
Q 047445 97 ESLKSSLKAVLIELC--NPRALVIDLFCTQAFEICSQLSIPT 136 (436)
Q Consensus 97 ~~~~~~l~~ll~~~~--~pD~vI~D~~~~~~~~~A~~~giP~ 136 (436)
.... .+++.++++. .||..+--.+.-|++.+.+.+|-|+
T Consensus 89 ~~~~-~f~~~~~~l~i~~~d~~~rtWh~ec~am~~~~lg~~~ 129 (213)
T cd00672 89 YYTK-EFFEDMKALNVLPPDVVPRVWHIECSAMAMKYLGETF 129 (213)
T ss_pred HHHH-HHHHHHHHcCCCCCCcceeehhHHHHHHHHHHcCCCc
Confidence 3333 5666777774 4476665555556666666777553
No 378
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=35.08 E-value=1.9e+02 Score=26.97 Aligned_cols=70 Identities=11% Similarity=-0.062 Sum_probs=42.0
Q ss_pred CeeeeccCccCCCCCCCChhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 047445 241 PIYPIGPLIKQDETLSASDEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRM 310 (436)
Q Consensus 241 ~v~~VGpl~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 310 (436)
+-.|+|.....+..+...-.++.++.....-+++-+-........+...+..+.+++++.+..+.+-++.
T Consensus 97 pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 97 PDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred CcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 3556665554444322344567777765433333332333334455666889999999999999986654
No 379
>PTZ00445 p36-lilke protein; Provisional
Probab=35.02 E-value=2e+02 Score=25.47 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=59.2
Q ss_pred CCHHH-HHHHHHHHHhcCCCeEEEEEcCCCCc--------hhHHHHHh----hcCCCCceEEecCCCCCCCCCCCCchHH
Q 047445 22 GHVVP-LLEFAKRLVINHGVHVRFLVITTNEA--------SAAQEKLL----RSLPDGLDVVDLPPVDVSAVTRDDMPVI 88 (436)
Q Consensus 22 GH~~P-~l~LA~~L~~r~Gh~Vt~~~~~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (436)
+|+.| +..+.++|.++ |-.|+++|...... ...+.+++ ++..+..+...+-. .. |.-++.-
T Consensus 74 ~~~tpefk~~~~~l~~~-~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~----yy-p~~w~~p 147 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNS-NIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYA----YY-PKFWQEP 147 (219)
T ss_pred ccCCHHHHHHHHHHHHC-CCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeee----eC-CcccCCh
Confidence 45666 88999999999 99999999887211 00122222 22222222222110 00 2211111
Q ss_pred HHHHHH-HH---Hhhh-HHHHHHHHhcC-C-CcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 89 TRLHAI-VD---ESLK-SSLKAVLIELC-N-PRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 89 ~~~~~~-~~---~~~~-~~l~~ll~~~~-~-pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
..+... +. .... -+++.++++.. + -+++..|.. ..-...|+++|+-.+.+..
T Consensus 148 ~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 148 SDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTG 206 (219)
T ss_pred hhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCC
Confidence 111100 00 0110 02367777764 3 378888874 5556899999999887654
No 380
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=35.00 E-value=87 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 047445 270 PSDSVIFVAPGSGGTLTAEQVIEMAWGLEQS 300 (436)
Q Consensus 270 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~ 300 (436)
+.+..||+++||......+.++..++.|...
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3455799999998655666677777777764
No 381
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.94 E-value=80 Score=25.22 Aligned_cols=38 Identities=8% Similarity=0.198 Sum_probs=27.2
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHh--CCCcEEEEEeC
Q 047445 273 SVIFVAPGSGGTLTAEQVIEMAWGLEQ--SKQRFIWVVRM 310 (436)
Q Consensus 273 ~vV~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~ 310 (436)
.+++++|||......+.+..+.+.+++ .+..+-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 589999999865445567777777754 34577888754
No 382
>PRK07454 short chain dehydrogenase; Provisional
Probab=34.82 E-value=3.2e+02 Score=24.02 Aligned_cols=37 Identities=8% Similarity=-0.024 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+++.++++.. .|. -=..++++|.++ |++|++++-..
T Consensus 4 ~~~k~vlItG~-sg~--iG~~la~~l~~~-G~~V~~~~r~~ 40 (241)
T PRK07454 4 NSMPRALITGA-SSG--IGKATALAFAKA-GWDLALVARSQ 40 (241)
T ss_pred CCCCEEEEeCC-Cch--HHHHHHHHHHHC-CCEEEEEeCCH
Confidence 34555666543 333 346788999998 99999887543
No 383
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=34.66 E-value=66 Score=29.33 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=32.0
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|.|.+..=+|-|...-...||..|+++ |++|.++=...
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~-G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKR-GKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 457777668999999999999999998 99999885443
No 384
>PRK11269 glyoxylate carboligase; Provisional
Probab=34.65 E-value=35 Score=35.50 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=21.3
Q ss_pred ceeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 364 TGGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 364 v~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
++++++|.| .+++++|.+.++|||++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 334555555 789999999999999985
No 385
>PRK09134 short chain dehydrogenase; Provisional
Probab=34.57 E-value=3.3e+02 Score=24.23 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVIT 48 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~ 48 (436)
+..+.++++-. .|.+= ..+++.|.++ |++|.++...
T Consensus 7 ~~~k~vlItGa-s~giG--~~la~~l~~~-g~~v~~~~~~ 42 (258)
T PRK09134 7 AAPRAALVTGA-ARRIG--RAIALDLAAH-GFDVAVHYNR 42 (258)
T ss_pred CCCCEEEEeCC-CcHHH--HHHHHHHHHC-CCEEEEEeCC
Confidence 34445555533 34333 4788999998 9999877543
No 386
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=34.43 E-value=50 Score=28.22 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||++.-.++. ..+-...+.+.|+++ |++|.++.++.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~-g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKL-GYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHC-CCEEEEEEChH
Confidence 5666666655 555667999999998 99999999987
No 387
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=34.39 E-value=4.3e+02 Score=28.11 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.6
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.|++.+. +..|-..-.+.|++.|+++ |.+|.++-+-.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~-G~~Vg~fKPi~ 41 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK-GVKVGFFKPIA 41 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEeCCcc
Confidence 3666655 4689999999999999999 99999998644
No 388
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=34.31 E-value=2.1e+02 Score=30.69 Aligned_cols=40 Identities=33% Similarity=0.504 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.++||.|=..||-|..+-|+.=|+++.+. |.+|.+-.-+.
T Consensus 21 GklkIf~G~apGVGKTyaML~~a~~~~~~-G~DvviG~vEt 60 (890)
T COG2205 21 GKLKIFLGAAPGVGKTYAMLSEAQRLLAE-GVDVVIGVVET 60 (890)
T ss_pred CceEEEeecCCCccHHHHHHHHHHHHHHc-CCcEEEEEecC
Confidence 35899999999999999999999999999 99999988765
No 389
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=34.02 E-value=2.4e+02 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHh----------cCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVI----------NHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~----------r~Gh~Vt~~~~~~ 49 (436)
-.++...++.|-..-++.++..+.. + +..|.+++.+.
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~-~~~Vl~i~~E~ 80 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPR-PGRVLYISLED 80 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT----------EEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCccccc-CceEEEEeccC
Confidence 5777888999999999999999987 5 78999999988
No 390
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=33.90 E-value=3.9e+02 Score=24.82 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=56.4
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCc
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKRLVINH-GVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDM 85 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (436)
..+++||+++..+.-.. +.+|..+.+... +++|..+.+... ....++++.+ +.+..++... .
T Consensus 86 ~~~~~ri~vl~Sg~g~n---l~al~~~~~~~~~~~~i~~visn~~----~~~~lA~~~g--Ip~~~~~~~~------~-- 148 (286)
T PRK13011 86 PAARPKVLIMVSKFDHC---LNDLLYRWRIGELPMDIVGVVSNHP----DLEPLAAWHG--IPFHHFPITP------D-- 148 (286)
T ss_pred cccCceEEEEEcCCccc---HHHHHHHHHcCCCCcEEEEEEECCc----cHHHHHHHhC--CCEEEeCCCc------C--
Confidence 34678999999885333 445555544321 588888765431 1445566666 7766654211 0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc-hHHHHHHHcCCCeE
Q 047445 86 PVITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT-QAFEICSQLSIPTY 137 (436)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~-~~~~~A~~~giP~v 137 (436)
. +......+.++++++ ++|++|.-.+.. ....+-+.+.-..+
T Consensus 149 ~---------~~~~~~~~~~~l~~~-~~Dlivlagy~~il~~~~l~~~~~~ii 191 (286)
T PRK13011 149 T---------KPQQEAQVLDVVEES-GAELVVLARYMQVLSPELCRKLAGRAI 191 (286)
T ss_pred c---------hhhhHHHHHHHHHHh-CcCEEEEeChhhhCCHHHHhhccCCeE
Confidence 0 001111345677888 999999764333 33334444433333
No 391
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.83 E-value=62 Score=31.60 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..||++.-.++.| .+-...+.+.|.+. |++|.++.++.
T Consensus 3 ~k~IllgiTGSia-a~~~~~ll~~L~~~-g~~V~vv~T~~ 40 (390)
T TIGR00521 3 NKKILLGVTGGIA-AYKTVELVRELVRQ-GAEVKVIMTEA 40 (390)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHhC-CCEEEEEECHh
Confidence 4578888777665 46689999999998 99999999988
No 392
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=33.78 E-value=33 Score=32.13 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=32.5
Q ss_pred hcCccCceeeeeccCcccHHHHHH----cCCcEeeccccccchhH
Q 047445 358 ILRHSSTGGFLSHCGWNSSLESIC----HGVPMIAWPLYAEQKMN 398 (436)
Q Consensus 358 lL~~~~v~~~I~HGG~~s~~eal~----~GvP~l~~P~~~DQ~~n 398 (436)
-|+.-++.++|.=||-+|+.-|.. +++|+|.+|-..|-...
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~ 130 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIP 130 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCc
Confidence 456666778999999999877753 79999999988775443
No 393
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=33.72 E-value=51 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=23.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|-+++..+.|-+ =.+||++|.++ ||+|+++....
T Consensus 17 VR~itN~SSG~i--G~aLA~~L~~~-G~~V~li~r~~ 50 (229)
T PRK06732 17 VRGITNHSTGQL--GKIIAETFLAA-GHEVTLVTTKT 50 (229)
T ss_pred ceeecCccchHH--HHHHHHHHHhC-CCEEEEEECcc
Confidence 444454554433 35788999999 99999997543
No 394
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.68 E-value=2.9e+02 Score=23.26 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHH
Q 047445 26 PLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKA 105 (436)
Q Consensus 26 P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (436)
-+..|.+...++ |..|.++...+.......+.+.+.++ ++++.......+.. .... .+.+
T Consensus 34 l~~~ll~~~~~~-~~~v~llG~~~~~~~~~~~~l~~~yp-~l~i~g~~~g~~~~-----------------~~~~-~i~~ 93 (171)
T cd06533 34 LMPALLELAAQK-GLRVFLLGAKPEVLEKAAERLRARYP-GLKIVGYHHGYFGP-----------------EEEE-EIIE 93 (171)
T ss_pred HHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHHHHHHCC-CcEEEEecCCCCCh-----------------hhHH-HHHH
Confidence 355677777777 89999998877232333334445555 67766533211110 0111 2445
Q ss_pred HHHhcCCCcEEEEcCCcc----hHHHHHHHcCCCeE
Q 047445 106 VLIELCNPRALVIDLFCT----QAFEICSQLSIPTY 137 (436)
Q Consensus 106 ll~~~~~pD~vI~D~~~~----~~~~~A~~~giP~v 137 (436)
.|.+. +||+|++-.-.+ +.....+.++.+++
T Consensus 94 ~I~~~-~pdiv~vglG~PkQE~~~~~~~~~l~~~v~ 128 (171)
T cd06533 94 RINAS-GADILFVGLGAPKQELWIARHKDRLPVPVA 128 (171)
T ss_pred HHHHc-CCCEEEEECCCCHHHHHHHHHHHHCCCCEE
Confidence 66677 999999997666 44455555555543
No 395
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=33.49 E-value=59 Score=28.74 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=26.7
Q ss_pred HHHHhcCCCcEEEEcCCc--chHHHHHHHcCCCeEEEecch
Q 047445 105 AVLIELCNPRALVIDLFC--TQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 105 ~ll~~~~~pD~vI~D~~~--~~~~~~A~~~giP~v~~~~~~ 143 (436)
+.+.++ +||+||..... .....-....++|++.+....
T Consensus 54 E~i~~l-~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILAL-KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT---SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhC-CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 356667 99999988766 445567777899999887754
No 396
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=33.21 E-value=4.1e+02 Score=25.70 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEe
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFV 140 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~ 140 (436)
.+.+.+++. +||++|.+.. ....++++|+|++.+.
T Consensus 339 ~~~~~~~~~-~pdl~ig~~~---~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 339 ELEELIREL-KPDLIIGGSK---GRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHHhhc-CCCEEEECCc---HHHHHHHhCCCEEEcC
Confidence 455677777 9999999974 3478888999987543
No 397
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.19 E-value=1.5e+02 Score=26.87 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHHhcCCCcEEEEcCCcchH----HHHHHHcCCCeEEEec
Q 047445 103 LKAVLIELCNPRALVIDLFCTQA----FEICSQLSIPTYSFVT 141 (436)
Q Consensus 103 l~~ll~~~~~pD~vI~D~~~~~~----~~~A~~~giP~v~~~~ 141 (436)
-++++++. +.|+||+=..--.+ +.+|..+|||++.+..
T Consensus 186 n~al~~~~-~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~R 227 (249)
T PF02571_consen 186 NRALFRQY-GIDVLVTKESGGSGFDEKIEAARELGIPVIVIKR 227 (249)
T ss_pred HHHHHHHc-CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeC
Confidence 35688899 99999987532222 3699999999998643
No 398
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=33.14 E-value=74 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=31.4
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVIT 48 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~ 48 (436)
|.|.+..=+|-|-..-...||.+|+++ |++|.++=-.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~-g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKL-GKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhC-CCeEEEEecC
Confidence 467777667999999999999999999 9999988443
No 399
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=33.14 E-value=1.6e+02 Score=26.12 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCC
Q 047445 28 LEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLP 64 (436)
Q Consensus 28 l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~ 64 (436)
.++|++|.++ |++|++.............++.++.+
T Consensus 10 ~aia~~l~~~-Ga~V~~~~~~~~~~~~~~~~l~~~~~ 45 (241)
T PF13561_consen 10 RAIARALAEE-GANVILTDRNEEKLADALEELAKEYG 45 (241)
T ss_dssp HHHHHHHHHT-TEEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHHHcC
Confidence 5789999998 99999998876111123445555555
No 400
>PRK04148 hypothetical protein; Provisional
Probab=33.09 E-value=1.7e+02 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.++++.+..+ .| ..+|..|++. ||+|+.+=...
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~-G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKES-GFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHC-CCEEEEEECCH
Confidence 45789999888 44 2467888888 99999887766
No 401
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.99 E-value=2.6e+02 Score=22.48 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++.||++...++-+|-.----++..|+.. |++|.......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~-GfeVi~lg~~~ 40 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADL-GFDVDVGPLFQ 40 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhC-CcEEEECCCCC
Confidence 46789999999999999999999999998 99999988654
No 402
>PRK09354 recA recombinase A; Provisional
Probab=32.91 E-value=1.4e+02 Score=28.56 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=53.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHH
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLH 92 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (436)
+.++..++.|-..-++.++...+++ |-.|.|+.++..+. ...++..| ++...+- ... +.. ...
T Consensus 63 teI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~----~~~a~~lG--vdld~ll---i~q--p~~---~Eq-- 125 (349)
T PRK09354 63 VEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALD----PVYAKKLG--VDIDNLL---VSQ--PDT---GEQ-- 125 (349)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchH----HHHHHHcC--CCHHHeE---Eec--CCC---HHH--
Confidence 4455567999999999999999888 99999999987222 23455555 2211110 001 111 111
Q ss_pred HHHHHhhhHHHHHHHHhcCCCcEEEEcCCc
Q 047445 93 AIVDESLKSSLKAVLIELCNPRALVIDLFC 122 (436)
Q Consensus 93 ~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~ 122 (436)
... .+..++++- .+|+||.|+..
T Consensus 126 -----~l~-i~~~li~s~-~~~lIVIDSva 148 (349)
T PRK09354 126 -----ALE-IADTLVRSG-AVDLIVVDSVA 148 (349)
T ss_pred -----HHH-HHHHHhhcC-CCCEEEEeChh
Confidence 122 334566666 99999999744
No 403
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=32.89 E-value=2.4e+02 Score=24.63 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCC------CeEEEEEcCCCCchhHHHHHhhc
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHG------VHVRFLVITTNEASAAQEKLLRS 62 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~G------h~Vt~~~~~~~~~~~~~~~~~~~ 62 (436)
-+.+...|+.|-..-++.+|...... | ..|.|+.++..+...+..+..+.
T Consensus 21 v~~I~G~~GsGKT~l~~~ia~~~~~~-~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~ 76 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEAQLP-GELGGLEGKVVYIDTEGAFRPERLVQLAVR 76 (226)
T ss_pred EEEEeCCCCCChhHHHHHHHHHhhcc-cccCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence 45666678999999999999988776 7 89999998874444445554444
No 404
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.88 E-value=2.6e+02 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++||+ .++.|++ =..|++.|.++ ||+|+.++...
T Consensus 7 ~~vlI--tGasg~i--G~~l~~~l~~~-g~~v~~~~~~~ 40 (249)
T PRK12825 7 RVALV--TGAARGL--GRAIALRLARA-GADVVVHYRSD 40 (249)
T ss_pred CEEEE--eCCCchH--HHHHHHHHHHC-CCeEEEEeCCC
Confidence 35555 3445554 35788889998 99997766654
No 405
>PRK13604 luxD acyl transferase; Provisional
Probab=32.64 E-value=98 Score=29.09 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEc
Q 047445 9 SRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVI 47 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~ 47 (436)
.+...++++++..++-.-+..+|+.|.++ |..|..+=.
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~-G~~vLrfD~ 72 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSN-GFHVIRYDS 72 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHC-CCEEEEecC
Confidence 34567888888888877799999999999 988887754
No 406
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.62 E-value=4.3e+02 Score=25.86 Aligned_cols=40 Identities=15% Similarity=0.388 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhc---CCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVIN---HGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r---~Gh~Vt~~~~~~ 49 (436)
+..|+|+...|.|-..-+..||..+..+ +|+.|.+++...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 3457777777999999999999998742 289999999887
No 407
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=32.55 E-value=1.5e+02 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.101 Sum_probs=25.7
Q ss_pred hcCccCceeeeeccCcccHHHHHHc----CCcEeeccc
Q 047445 358 ILRHSSTGGFLSHCGWNSSLESICH----GVPMIAWPL 391 (436)
Q Consensus 358 lL~~~~v~~~I~HGG~~s~~eal~~----GvP~l~~P~ 391 (436)
+-..+| ++|+.||=||+.++++. ++|++.+-.
T Consensus 60 ~~~~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 60 IGARAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred hccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 334577 59999999999999874 789987765
No 408
>PRK06701 short chain dehydrogenase; Provisional
Probab=32.15 E-value=2.9e+02 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCC
Q 047445 27 LLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
=..+|++|.++ |++|+++.-..
T Consensus 59 G~~la~~l~~~-G~~V~l~~r~~ 80 (290)
T PRK06701 59 GRAVAVLFAKE-GADIAIVYLDE 80 (290)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCc
Confidence 46789999998 99998876543
No 409
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=32.14 E-value=2.1e+02 Score=23.98 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=56.8
Q ss_pred EcCCCCCCHHHH-HHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCC---CCCC---ch-H
Q 047445 16 LASPGLGHVVPL-LEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAV---TRDD---MP-V 87 (436)
Q Consensus 16 ~~~p~~GH~~P~-l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~-~ 87 (436)
+.+...+.+..+ ..+|.+|+++ |++|.=+.... ....... ........++.-..-.. ...+ .. .
T Consensus 4 v~~~~~~~~d~lL~~~a~~L~~~-G~rv~G~vQ~~------~~~~~~~-~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD 75 (159)
T PF10649_consen 4 VVYDDGGDIDALLAAFAARLRAR-GVRVAGLVQRN------TADGDGG-RCDMDLRDLPSGRRIRISQDLGPGSRGCRLD 75 (159)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccc------cCCCCCC-ccceEEEECCCCCEEEEeeccCCCCcccccC
Confidence 344444555554 4699999999 99998777654 1111111 11344445443211110 0111 10 0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc---------hHHHHHHHcCCCeEEEecch
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCT---------QAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~---------~~~~~A~~~giP~v~~~~~~ 143 (436)
...+.. ... .++..++. .+|++|..-|-- ..+..|-..|||+++..+..
T Consensus 76 ~~~La~----A~~-~l~~al~~--~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 76 PGALAE----ASA-ALRRALAE--GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred HHHHHH----HHH-HHHHHHhc--CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 111111 112 23333333 899999986532 11234666799998876654
No 410
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=31.81 E-value=4.5e+02 Score=24.85 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHH
Q 047445 24 VVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSL 103 (436)
Q Consensus 24 ~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (436)
..-+..|++.|.++ |.+|.++..+........++..+..+ ......+ .+ +.... .+
T Consensus 199 ~e~~~~l~~~l~~~-~~~ivl~g~p~~~e~~~~~~i~~~~~---------~~~~~~l--~g-----------~~sL~-el 254 (344)
T TIGR02201 199 NDRFSALIDALHAR-GYEVVLTSGPDKDELAMVNEIAQGCQ---------TPRVTSL--AG-----------KLTLP-QL 254 (344)
T ss_pred HHHHHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHhhCC---------CCccccc--CC-----------CCCHH-HH
Confidence 34577899999888 99998887653001111122211111 0000000 00 00122 33
Q ss_pred HHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 104 KAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 104 ~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
..+++ +-|++|+. ..+...+|..+|+|.|.++.
T Consensus 255 ~ali~---~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 255 AALID---HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHH---hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 44555 66889977 45667899999999998765
No 411
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=31.81 E-value=42 Score=28.18 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=20.6
Q ss_pred eeeeccC------cccHHHHHHcCCcEeecc
Q 047445 366 GFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 366 ~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
++++|+| .+++.+|...++|||++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 4677777 457889999999999995
No 412
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=31.75 E-value=1.9e+02 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCCeEEEEEcCC
Q 047445 28 LEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 28 l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.++|..++++ |++|.+++...
T Consensus 3 ~a~a~~~a~~-g~~vllv~~Dp 23 (284)
T TIGR00345 3 CATAIRLAEQ-GKKVLLVSTDP 23 (284)
T ss_pred HHHHHHHHHC-CCeEEEEECCC
Confidence 4688889998 99999999876
No 413
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=31.71 E-value=1.4e+02 Score=25.06 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=32.6
Q ss_pred HHHhhhHHHHHHHHhcCCCcEEEEcCCcch-------------H--HHHHHHcCCCeEEEecch
Q 047445 95 VDESLKSSLKAVLIELCNPRALVIDLFCTQ-------------A--FEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 95 ~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~-------------~--~~~A~~~giP~v~~~~~~ 143 (436)
+..... .+.++++.. +||.++.+..++. + ..++.+.|+|+.-+.++.
T Consensus 46 l~~I~~-~l~~~i~~~-~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~ 107 (164)
T PRK00039 46 LKQIYD-GLSELIDEY-QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHH-HHHHHHHHh-CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 334445 778899988 9999998864332 1 147778899988775543
No 414
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=31.67 E-value=1.7e+02 Score=26.79 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCcEEEE-cC-CcchHHHHHHHcCCCeEEEecchH
Q 047445 112 NPRALVI-DL-FCTQAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 112 ~pD~vI~-D~-~~~~~~~~A~~~giP~v~~~~~~~ 144 (436)
.||+||. |. ....++.=|.++|||.|.++-+.+
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 6998884 54 344567789999999999876654
No 415
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.44 E-value=44 Score=34.57 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred ceeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 364 TGGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 364 v~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
++++++|.| .+++.+|.+.++|||++-
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 446777877 447899999999999985
No 416
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.39 E-value=91 Score=27.40 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++.++-.+-.| ..||++|.+. ||+|++.+...
T Consensus 3 ~~~i~GtGniG-----~alA~~~a~a-g~eV~igs~r~ 34 (211)
T COG2085 3 IIAIIGTGNIG-----SALALRLAKA-GHEVIIGSSRG 34 (211)
T ss_pred EEEEeccChHH-----HHHHHHHHhC-CCeEEEecCCC
Confidence 44454444333 5788999999 99999998776
No 417
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=31.31 E-value=1.1e+02 Score=30.03 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=29.6
Q ss_pred HhhhHHHHHHHHhcCCCcEEEEcCCcch------H----HHHHHHcCCCeEEEe
Q 047445 97 ESLKSSLKAVLIELCNPRALVIDLFCTQ------A----FEICSQLSIPTYSFV 140 (436)
Q Consensus 97 ~~~~~~l~~ll~~~~~pD~vI~D~~~~~------~----~~~A~~~giP~v~~~ 140 (436)
.... .+.++++++ +||++|+...+-+ + ..+.++++||.+.-.
T Consensus 63 ea~~-~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 63 EAVA-RVLEMLKDK-EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHH-HHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3444 666788888 9999999975432 1 135677999988754
No 418
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=31.20 E-value=78 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=29.8
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 14 AVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 14 l~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+++..+..--++|..-++...++. |+||+++.+--
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~-G~EV~VF~Tfw 41 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAM-GYEVTVFFTFW 41 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeHH
Confidence 445567778899999999999999 99999999865
No 419
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.18 E-value=1.1e+02 Score=30.03 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHhhhHHHHHHHHhcCCCcEEEEcCCcch------H----HHHHHHcCCCeEEEe
Q 047445 96 DESLKSSLKAVLIELCNPRALVIDLFCTQ------A----FEICSQLSIPTYSFV 140 (436)
Q Consensus 96 ~~~~~~~l~~ll~~~~~pD~vI~D~~~~~------~----~~~A~~~giP~v~~~ 140 (436)
..... .+.++++++ +||++|+...+-+ + ..+.++++||.+.-.
T Consensus 62 eea~~-~i~~mv~k~-~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKA-KVLEMIKGA-NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHH-HHHHHHHhc-CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 33444 667788888 9999999975432 1 135677999988754
No 420
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=31.09 E-value=1.5e+02 Score=27.01 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=35.3
Q ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
....+-+|+.. ++-|...-...||-.|++- +|.|.++++.+
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~-r~~vLiISTDP 57 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKV-RESVLIISTDP 57 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhcc-CCceEEeecCc
Confidence 34567778776 6889999999999999998 99999999987
No 421
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=31.04 E-value=3.3e+02 Score=23.74 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCC
Q 047445 27 LLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-..+|+.|.++ ||+|..+....
T Consensus 11 G~~la~~l~~~-G~~v~~~~r~~ 32 (239)
T TIGR01830 11 GRAIALKLAKE-GAKVIITYRSS 32 (239)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCc
Confidence 46788999998 99998886543
No 422
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.98 E-value=1.2e+02 Score=28.46 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=23.8
Q ss_pred ccCceeeeeccCcccHHHHH----HcCCcEeeccc
Q 047445 361 HSSTGGFLSHCGWNSSLESI----CHGVPMIAWPL 391 (436)
Q Consensus 361 ~~~v~~~I~HGG~~s~~eal----~~GvP~l~~P~ 391 (436)
..| .+|--||=||+.|++ ..++|+-++|.
T Consensus 64 ~~d--~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 64 GTD--ALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CCC--EEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 346 589999999999987 34799999996
No 423
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=30.77 E-value=60 Score=27.38 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=20.1
Q ss_pred eeeeccC------cccHHHHHHcCCcEeeccc
Q 047445 366 GFLSHCG------WNSSLESICHGVPMIAWPL 391 (436)
Q Consensus 366 ~~I~HGG------~~s~~eal~~GvP~l~~P~ 391 (436)
++++|.| .+++.+|...++|+|++.-
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 5777776 4578899999999999874
No 424
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=30.65 E-value=48 Score=28.49 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|+|.++.- .|++- ..|+++..+| ||+||-++-..
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~R-GHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALKR-GHEVTAIVRNA 34 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHhC-CCeeEEEEeCh
Confidence 45555543 33332 3678999999 99999998776
No 425
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.49 E-value=5.5e+02 Score=25.44 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+..|+|+...|.|-..-+..||..|..+ |+.|.+++...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt 279 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH 279 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 3567888888999999999999999998 99999999866
No 426
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=30.38 E-value=97 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=24.5
Q ss_pred CEEEEEc-CCCCC--CHHHHHHHHHHHHhcCCCeE-EEEEcCC
Q 047445 11 PHVAVLA-SPGLG--HVVPLLEFAKRLVINHGVHV-RFLVITT 49 (436)
Q Consensus 11 ~~il~~~-~p~~G--H~~P~l~LA~~L~~r~Gh~V-t~~~~~~ 49 (436)
|+++|+- .+-+| ...-.+.+|+++.+. ||+| .++-...
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~-gh~v~~vFf~~D 42 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAE-GHELVSVFFYQD 42 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhC-CCCeeEEEEehH
Confidence 3444443 33344 445677889999998 9994 6666655
No 427
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=5.1e+02 Score=24.96 Aligned_cols=129 Identities=13% Similarity=0.037 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCch
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMP 86 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (436)
..++.|+.++..+--||.-.|.-=|..|++. |..|.++....... ..++.+ .+ +++++.++...+....|.-.
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p---~e~l~~-hp-rI~ih~m~~l~~~~~~p~~~- 81 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIP---LEELLN-HP-RIRIHGMPNLPFLQGGPRVL- 81 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCC---hHHHhc-CC-ceEEEeCCCCcccCCCchhh-
Confidence 3467799999999999999999999999998 99999999765222 445555 44 79999998765433211111
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcC-Ccc----hHHHHHHHcCCCeEEEecchHHH
Q 047445 87 VITRLHAIVDESLKSSLKAVLIELCNPRALVIDL-FCT----QAFEICSQLSIPTYSFVTTSIHF 146 (436)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~-~~~----~~~~~A~~~giP~v~~~~~~~~~ 146 (436)
-.....+-.... -+-.+...- ++|.++.-+ -.. .+.......|...++=|....+.
T Consensus 82 --~l~lKvf~Qfl~-Ll~aL~~~~-~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 82 --FLPLKVFWQFLS-LLWALFVLR-PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred --hhHHHHHHHHHH-HHHHHHhcc-CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 111111111112 222333333 788888664 222 22234455577777777765543
No 428
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=30.13 E-value=39 Score=34.77 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=22.0
Q ss_pred ceeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 364 TGGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 364 v~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
.+++++|.| .+++++|..-++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 336788777 458899999999999994
No 429
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.09 E-value=1.6e+02 Score=27.71 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=25.2
Q ss_pred CccCceeeeeccCcccHHHHHHc----CCcEeeccc
Q 047445 360 RHSSTGGFLSHCGWNSSLESICH----GVPMIAWPL 391 (436)
Q Consensus 360 ~~~~v~~~I~HGG~~s~~eal~~----GvP~l~~P~ 391 (436)
.+++ ++|.-||-||+.+++.. ++|++.+..
T Consensus 56 ~~~d--~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELID--LAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcC--EEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4567 59999999999999864 889998886
No 430
>PRK08818 prephenate dehydrogenase; Provisional
Probab=30.07 E-value=5.2e+02 Score=25.07 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=55.2
Q ss_pred CCCEEEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchH
Q 047445 9 SRPHVAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPV 87 (436)
Q Consensus 9 ~~~~il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (436)
.+++|.++-. +..|- .+|+.|++++|++|+-+-... .......+.+++. .+-+...|.
T Consensus 3 ~~~~I~IIGl~GliGg-----slA~alk~~~~~~V~g~D~~d-~~~~~~~~~v~~a--DlVilavPv------------- 61 (370)
T PRK08818 3 AQPVVGIVGSAGAYGR-----WLARFLRTRMQLEVIGHDPAD-PGSLDPATLLQRA--DVLIFSAPI------------- 61 (370)
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHhcCCCEEEEEcCCc-cccCCHHHHhcCC--CEEEEeCCH-------------
Confidence 4578888888 76663 578889875478887654322 0000112222222 244444441
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcchH--HHHHHHcCCCeEEEecc
Q 047445 88 ITRLHAIVDESLKSSLKAVLIELCNPRALVIDLFCTQA--FEICSQLSIPTYSFVTT 142 (436)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~~~--~~~A~~~giP~v~~~~~ 142 (436)
..... ... .+..+...+ +++++|+|..+.=. ...+...+.++|..+|.
T Consensus 62 -~~~~~----~l~-~l~~~~~~l-~~~~iVtDVgSvK~~i~~~~~~~~~~fVG~HPM 111 (370)
T PRK08818 62 -RHTAA----LIE-EYVALAGGR-AAGQLWLDVTSIKQAPVAAMLASQAEVVGLHPM 111 (370)
T ss_pred -HHHHH----HHH-HHhhhhcCC-CCCeEEEECCCCcHHHHHHHHhcCCCEEeeCCC
Confidence 11111 112 222222247 89999999877632 23444555666665554
No 431
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=29.95 E-value=65 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.157 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCeEEEEEcCC
Q 047445 28 LEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 28 l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+..|..|+++ |++|+++-...
T Consensus 9 l~aA~~L~~~-g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKA-GYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHC-CCcEEEEecCc
Confidence 5678999998 99999998766
No 432
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.93 E-value=3.6e+02 Score=24.05 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.++++-.+ |.+ =..+|+.|.++ |++|.++....
T Consensus 16 k~vlItGas-~gI--G~~ia~~l~~~-G~~v~~~~~~~ 49 (258)
T PRK06935 16 KVAIVTGGN-TGL--GQGYAVALAKA-GADIIITTHGT 49 (258)
T ss_pred CEEEEeCCC-chH--HHHHHHHHHHC-CCEEEEEeCCc
Confidence 555555443 333 37889999998 99999887653
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.92 E-value=1.8e+02 Score=26.26 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=35.3
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCc
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEA 52 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~ 52 (436)
|+|.+.-=++.|-..-..-|+++|.+++|++|..+-..+|.+
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~n 42 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSN 42 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 578888889999999888889999998569999999888444
No 434
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=29.89 E-value=2.9e+02 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEc
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVI 47 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~ 47 (436)
+.++++-.+. .-=..+|+.|.++ |++|++...
T Consensus 7 ~~~lItG~s~---~iG~~la~~l~~~-g~~v~~~~~ 38 (247)
T PRK12935 7 KVAIVTGGAK---GIGKAITVALAQE-GAKVVINYN 38 (247)
T ss_pred CEEEEECCCC---HHHHHHHHHHHHc-CCEEEEEcC
Confidence 4455544332 2346788999998 999987544
No 435
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.74 E-value=84 Score=28.34 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=23.9
Q ss_pred HHHHhcCCCcEEEEcCCcch--HH-HHHHHcCCCeEEEecc
Q 047445 105 AVLIELCNPRALVIDLFCTQ--AF-EICSQLSIPTYSFVTT 142 (436)
Q Consensus 105 ~ll~~~~~pD~vI~D~~~~~--~~-~~A~~~giP~v~~~~~ 142 (436)
+.|.++ +||+||....... .. .+.+..|+|++.+...
T Consensus 68 E~i~~l-~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 68 EKIAAL-KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHHhc-CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 355566 9999998754332 12 3445589998887643
No 436
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=29.72 E-value=3.7e+02 Score=23.18 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=25.3
Q ss_pred EEEEEcC---CC-CCCHH-HHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLAS---PG-LGHVV-PLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~---p~-~GH~~-P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
||.++.. |+ +|=.. -.-.|+..|+++ ||+|++.+...
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~-g~~v~Vyc~~~ 44 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSK-GIDVTVYCRSD 44 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcC-CceEEEEEccC
Confidence 4555543 32 34443 345688899998 99999999876
No 437
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=29.62 E-value=2e+02 Score=26.56 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=21.1
Q ss_pred ccCceeeeeccCcccHHHHHHc-----CCcEe-eccc
Q 047445 361 HSSTGGFLSHCGWNSSLESICH-----GVPMI-AWPL 391 (436)
Q Consensus 361 ~~~v~~~I~HGG~~s~~eal~~-----GvP~l-~~P~ 391 (436)
..+ ++|..||=||+.|++.. ..|.+ ++|.
T Consensus 57 ~~d--~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 57 GVD--TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCC--EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 355 59999999999997643 34444 4896
No 438
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.19 E-value=1.2e+02 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=29.7
Q ss_pred HHHHHHHhc-----C-CCcEEEEcCCcc----------hHHHHHHHcCCCeEEEecch
Q 047445 102 SLKAVLIEL-----C-NPRALVIDLFCT----------QAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 102 ~l~~ll~~~-----~-~pD~vI~D~~~~----------~~~~~A~~~giP~v~~~~~~ 143 (436)
.++.++..+ . .||+|++..-.- -+..+|+++|+|++-.+.+.
T Consensus 108 nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 108 NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 466777766 2 899999875332 35579999999987655443
No 439
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=29.13 E-value=3.9e+02 Score=23.36 Aligned_cols=47 Identities=17% Similarity=0.050 Sum_probs=32.5
Q ss_pred ChhHHhhhhcCC--CCCeEEEEecCCCCCCCHHHHHHHHHHHHhC-CCcEEE
Q 047445 258 SDEECLAWLGKQ--PSDSVIFVAPGSGGTLTAEQVIEMAWGLEQS-KQRFIW 306 (436)
Q Consensus 258 ~~~~l~~~l~~~--~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~ 306 (436)
..+.+.+++... ....++||...|. ...+....+.+++++. +.++.-
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~ 65 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSH 65 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEE
Confidence 445666676665 3567999988775 3456677788899888 776553
No 440
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=29.07 E-value=2e+02 Score=25.62 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=53.8
Q ss_pred eEE-EEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecc
Q 047445 273 SVI-FVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPS 351 (436)
Q Consensus 273 ~vV-~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~ 351 (436)
++| .+|-||. +-...++....++.++.++.-.+.-+-. | +.+
T Consensus 118 g~vgvlsAGTS---DlPvAeEa~~tae~lG~ev~~~~DvGVA-----------------------G-----------iHR 160 (254)
T COG1691 118 GKVGVLSAGTS---DLPVAEEAAVTAEELGVEVQKVYDVGVA-----------------------G-----------IHR 160 (254)
T ss_pred ceEEEEecCCC---CcchHHHHHHHHHHhCceEEEEEeeccc-----------------------h-----------HHh
Confidence 456 8899886 5566667777777778877655533211 0 123
Q ss_pred cCC--hhhhcCccCceeeeeccCcccHHHHHHcC---CcEeeccc
Q 047445 352 WAP--QVEILRHSSTGGFLSHCGWNSSLESICHG---VPMIAWPL 391 (436)
Q Consensus 352 ~~p--q~~lL~~~~v~~~I~HGG~~s~~eal~~G---vP~l~~P~ 391 (436)
-++ +......++ +.|--.|+-+.+-++-+| +|+|.+|-
T Consensus 161 Ll~~l~r~~~~~~~--~lIVvAGMEGaLPsvvagLvD~PVIavPT 203 (254)
T COG1691 161 LLSALKRLKIEDAD--VLIVVAGMEGALPSVVAGLVDVPVIAVPT 203 (254)
T ss_pred hhhHHHHHHhhCCC--eEEEEcccccchHHHHHhccCCCeEeccc
Confidence 344 445555666 588888988888888776 79999995
No 441
>PRK05867 short chain dehydrogenase; Provisional
Probab=28.75 E-value=3.1e+02 Score=24.41 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.++++-.+. --=..+|+.|.++ |++|.+.....
T Consensus 10 k~vlVtGas~---gIG~~ia~~l~~~-G~~V~~~~r~~ 43 (253)
T PRK05867 10 KRALITGAST---GIGKRVALAYVEA-GAQVAIAARHL 43 (253)
T ss_pred CEEEEECCCc---hHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 4555555433 2346889999998 99998876543
No 442
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=28.63 E-value=3.8e+02 Score=27.82 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHhcCCCcEEE----EcCCcchHHHHHHHcCCCeEEEecch
Q 047445 98 SLKSSLKAVLIELCNPRALV----IDLFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 98 ~~~~~l~~ll~~~~~pD~vI----~D~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
.+.+.++..++.- .+|.+| +|-..++.+..|-++++|.|++...+
T Consensus 98 lIAdsiE~~~~a~-~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 98 LIADSVEYMVNAH-CADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred HHHHHHHHHhhCC-CcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 3333555666666 889887 67788888899999999999886654
No 443
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=28.50 E-value=1.1e+02 Score=29.91 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+++++.+.. ||-|-..-...||..|+++ |++|.++=...
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~-G~rVLlID~Dp 143 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALR-GYRVLAIDLDP 143 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCC
Confidence 4566666654 6999999999999999998 99999886544
No 444
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.50 E-value=1.1e+02 Score=29.11 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=34.8
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..++|...+|.|-.+=+.++|++|.++ |+.|.+++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEHHH
Confidence 568888889999999999999999998 99999999876
No 445
>PLN02285 methionyl-tRNA formyltransferase
Probab=28.45 E-value=3.8e+02 Score=25.55 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=24.7
Q ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHhc-CCCeEEEEEcCC
Q 047445 7 KSSRPHVAVLASPGLGHVVPLLEFAKRLVIN-HGVHVRFLVITT 49 (436)
Q Consensus 7 ~~~~~~il~~~~p~~GH~~P~l~LA~~L~~r-~Gh~Vt~~~~~~ 49 (436)
..++|||+|+..+..| +.-+.+|.+..++. .+|+|..+.+..
T Consensus 3 ~~~~~kI~f~Gt~~fa-~~~L~~L~~~~~~~~~~~~iv~Vvt~~ 45 (334)
T PLN02285 3 SGRKKRLVFLGTPEVA-ATVLDALLDASQAPDSAFEVAAVVTQP 45 (334)
T ss_pred CCCccEEEEEECCHHH-HHHHHHHHhhhhccCCCCeEEEEEeCC
Confidence 3578999999766543 22333444333221 168888877665
No 446
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=28.30 E-value=47 Score=31.39 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=31.8
Q ss_pred hhcCccCceeeeeccCcccHHHHHH---cCCcEeeccccccch
Q 047445 357 EILRHSSTGGFLSHCGWNSSLESIC---HGVPMIAWPLYAEQK 396 (436)
Q Consensus 357 ~lL~~~~v~~~I~HGG~~s~~eal~---~GvP~l~~P~~~DQ~ 396 (436)
+-|..-++.++|.=||-+|+.-|.. +|+|+|++|-..|-.
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTIDND 128 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDND 128 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccccCC
Confidence 3466667778999999999877755 599999999877643
No 447
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.26 E-value=51 Score=34.12 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=21.9
Q ss_pred ceeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 364 TGGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 364 v~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
++++++|.| .+++.+|.+.++|||++-
T Consensus 68 ~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 68 VGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 446788877 447899999999999985
No 448
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=28.19 E-value=2.6e+02 Score=24.98 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCcEEEE-cC-CcchHHHHHHHcCCCeEEEecchH
Q 047445 112 NPRALVI-DL-FCTQAFEICSQLSIPTYSFVTTSI 144 (436)
Q Consensus 112 ~pD~vI~-D~-~~~~~~~~A~~~giP~v~~~~~~~ 144 (436)
.||+||. |. ....++.=|.++|||.|.++-+.+
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 7998884 54 344667789999999999877654
No 449
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=28.18 E-value=1.9e+02 Score=25.44 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVIT 48 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~ 48 (436)
=+++...|+.|...-++.+|....+. |..|.|++.+
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC
Confidence 35666678999999999999999998 9999999998
No 450
>PRK12939 short chain dehydrogenase; Provisional
Probab=28.17 E-value=3.4e+02 Score=23.87 Aligned_cols=22 Identities=27% Similarity=0.163 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCC
Q 047445 27 LLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
=..||+.|.++ ||+|.++....
T Consensus 20 G~~la~~l~~~-G~~v~~~~r~~ 41 (250)
T PRK12939 20 GAAFAEALAEA-GATVAFNDGLA 41 (250)
T ss_pred HHHHHHHHHHc-CCEEEEEeCCH
Confidence 36788899998 99998875443
No 451
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.16 E-value=65 Score=28.73 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 23 HVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 23 H~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|..-|...|.+|+++ ||+|+++....
T Consensus 47 ~~saMRhfa~~L~~~-G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAK-GFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHT-T--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 677889999999999 99999999886
No 452
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=28.13 E-value=36 Score=28.28 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=23.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|.++..+..| .++|..|..+ ||+|++.+...
T Consensus 2 I~ViGaG~~G-----~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWG-----TALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHH-----HHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHH-----HHHHHHHHHc-CCEEEEEeccH
Confidence 4444444444 4789999999 99999999976
No 453
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=27.95 E-value=1.2e+02 Score=28.17 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccCChhhhcCccCc
Q 047445 285 LTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWAPQVEILRHSST 364 (436)
Q Consensus 285 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v 364 (436)
.+.+..+.+.+|+.+...+.||...++.. -..+.++++...+-+++.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g--------------------------------a~rlL~~ld~~~~~~~pK- 92 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYG--------------------------------ANRLLPYLDYDLIRANPK- 92 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCC--------------------------------HHHhhhhCCHHHHhhCCe-
Confidence 35566778999999999999999988653 122335555555556666
Q ss_pred eeeeeccCcccHHHHHHc--CCcEeeccccc
Q 047445 365 GGFLSHCGWNSSLESICH--GVPMIAWPLYA 393 (436)
Q Consensus 365 ~~~I~HGG~~s~~eal~~--GvP~l~~P~~~ 393 (436)
.||-..-..+++-+++. |++.+-=|...
T Consensus 93 -~~iGySDiTaL~~~l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 93 -IFVGYSDITALHLALYAKTGLVTFHGPMLA 122 (282)
T ss_pred -EEEEecHHHHHHHHHHHhcCceEEECcccc
Confidence 47877777788887754 77777777543
No 454
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.88 E-value=3.3e+02 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.0
Q ss_pred hhcCccCceeeeeccCcccHHHHHH---------cCCcEeecc
Q 047445 357 EILRHSSTGGFLSHCGWNSSLESIC---------HGVPMIAWP 390 (436)
Q Consensus 357 ~lL~~~~v~~~I~HGG~~s~~eal~---------~GvP~l~~P 390 (436)
.++..+|. .++--||.||+-|.+. +.+|++++=
T Consensus 92 ~m~~~sda-~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 92 MMAELADA-FIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHhCCE-EEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 34455664 6777889999988743 499998874
No 455
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.80 E-value=3.8e+02 Score=22.72 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=58.8
Q ss_pred EcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHH
Q 047445 16 LASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIV 95 (436)
Q Consensus 16 ~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (436)
++.-..--.--+.+-..+|+.+ |-.|++++... ..+....+++++ +.|+.- ....
T Consensus 40 v~wd~~~~tpe~~~W~~e~k~~-gi~v~vvSNn~---e~RV~~~~~~l~--v~fi~~----------A~KP--------- 94 (175)
T COG2179 40 VPWDNPDATPELRAWLAELKEA-GIKVVVVSNNK---ESRVARAAEKLG--VPFIYR----------AKKP--------- 94 (175)
T ss_pred ecccCCCCCHHHHHHHHHHHhc-CCEEEEEeCCC---HHHHHhhhhhcC--Cceeec----------ccCc---------
Confidence 3343444445567788899998 99999999865 224455556655 554421 1111
Q ss_pred HHhhhHHHHHHHHhcC---CCcEEEEcCCcchHHHHHHHcCCCeEEEecc
Q 047445 96 DESLKSSLKAVLIELC---NPRALVIDLFCTQAFEICSQLSIPTYSFVTT 142 (436)
Q Consensus 96 ~~~~~~~l~~ll~~~~---~pD~vI~D~~~~~~~~~A~~~giP~v~~~~~ 142 (436)
... .+++.++++. +--++|.|.++.-. ..+++.|+-+|.+-+-
T Consensus 95 --~~~-~fr~Al~~m~l~~~~vvmVGDqL~TDV-lggnr~G~~tIlV~Pl 140 (175)
T COG2179 95 --FGR-AFRRALKEMNLPPEEVVMVGDQLFTDV-LGGNRAGMRTILVEPL 140 (175)
T ss_pred --cHH-HHHHHHHHcCCChhHEEEEcchhhhhh-hcccccCcEEEEEEEe
Confidence 111 4555555553 33456677655544 7889999998887654
No 456
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=27.70 E-value=3.2e+02 Score=27.98 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHhcCCCcEEE----EcCCcchHHHHHHHcCCCeEEEecch
Q 047445 98 SLKSSLKAVLIELCNPRALV----IDLFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 98 ~~~~~l~~ll~~~~~pD~vI----~D~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
.+.+.++..++.- .+|-+| +|-..++.+..|-++++|.|++...+
T Consensus 96 liA~~iE~~~~a~-~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGp 144 (552)
T PRK00911 96 VIADSIETVVNAH-WFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGP 144 (552)
T ss_pred HHHHHHHHHhhCC-CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 3443566666666 889888 67888888899999999999887654
No 457
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=27.69 E-value=68 Score=29.89 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCCCHHH--------HHHHHHHHHhcCCCeEEEEEcCC
Q 047445 9 SRPHVAVLASPGLGHVVP--------LLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 9 ~~~~il~~~~p~~GH~~P--------~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+..+|++++-....|..+ ...||++|++. |.+|++++.+.
T Consensus 39 ~~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~l-G~~~~ivtd~~ 86 (291)
T PF14336_consen 39 HAKSVLIVTGFPVPPAPPPETDGPPGAAALARALQAL-GKEVVIVTDER 86 (291)
T ss_pred CCCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHc-CCeEEEEECHH
Confidence 345666666332233322 57899999998 99999999887
No 458
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=27.67 E-value=1e+02 Score=26.14 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHHhcCCCcEEEEcCCcch-HHHHHHHcCCCeEEEec
Q 047445 106 VLIELCNPRALVIDLFCTQ-AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 106 ll~~~~~pD~vI~D~~~~~-~~~~A~~~giP~v~~~~ 141 (436)
.|.++ +||+||....... ...--++.|+|++.+..
T Consensus 55 ~l~~l-~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 55 KIVAL-KPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred HHhcc-CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 45566 9999998653332 23455778999877643
No 459
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.59 E-value=68 Score=29.78 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcC
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVIT 48 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~ 48 (436)
|+|.++-.+..| ..+|..|.+. ||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCeEEEEECC
Confidence 467787777666 5678889998 9999999873
No 460
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=27.58 E-value=4.1e+02 Score=25.04 Aligned_cols=51 Identities=6% Similarity=-0.047 Sum_probs=37.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH------hcCCCeEEEEEcCCCCchhHHHHHhhcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLV------INHGVHVRFLVITTNEASAAQEKLLRSLP 64 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~------~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~ 64 (436)
+.++-.|+.|-..-++.+|-.-+ .. |..|.|+.++..+...+..+.++.++
T Consensus 99 teI~G~~GsGKTql~lqla~~~~~~~~~gg~-~~~vvYIdtE~~f~~eRi~~~a~~~g 155 (313)
T TIGR02238 99 TEVFGEFRCGKTQLSHTLCVTAQLPREMGGG-NGKVAYIDTEGTFRPDRIRAIAERFG 155 (313)
T ss_pred EEEECCCCCCcCHHHHHHHHHHhcchhhcCC-CCeEEEEEcCCCCCHHHHHHHHHHcC
Confidence 44566789999999998885332 23 56999999998666666777776655
No 461
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=27.46 E-value=1.1e+02 Score=29.75 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCCEEEEEcC--CCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 047445 9 SRPHVAVLAS--PGLGHVVPLLEFAKRLVINHGVHVRFLV 46 (436)
Q Consensus 9 ~~~~il~~~~--p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~ 46 (436)
++++|+-+.. +|-|-..-.+.||..|+.+ |++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~-G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQ-GHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 4456655554 6999999999999999998 99999986
No 462
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=27.45 E-value=50 Score=31.30 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=31.1
Q ss_pred hhcCccCceeeeeccCcccHHHHHH---cCCcEeeccccccc
Q 047445 357 EILRHSSTGGFLSHCGWNSSLESIC---HGVPMIAWPLYAEQ 395 (436)
Q Consensus 357 ~lL~~~~v~~~I~HGG~~s~~eal~---~GvP~l~~P~~~DQ 395 (436)
+-|..-++.++|.=||-+|+..|.. .|+|+|++|...|-
T Consensus 88 ~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTIDN 129 (324)
T TIGR02483 88 ANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTIDN 129 (324)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccCC
Confidence 3455566668999999999987755 59999999987764
No 463
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.35 E-value=4.4e+02 Score=23.38 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVIT 48 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~ 48 (436)
+.++++..+.| -=..+|+.|.++ |++|.+....
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~-G~~v~~~~r~ 41 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQA-GADVALFDLR 41 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHC-CCEEEEEeCC
Confidence 46666655543 457889999998 9999988754
No 464
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=27.27 E-value=1.3e+02 Score=25.16 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=32.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
++++..++.|-......+|..|.++ |.+|.++....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCC
Confidence 5677789999999999999999998 99999999776
No 465
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=27.24 E-value=1.1e+02 Score=26.81 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=28.3
Q ss_pred HhhhHHHHHHHHhcC-CCcEEEEcCCcc-------hHHHHHHHcCCCeEEEec
Q 047445 97 ESLKSSLKAVLIELC-NPRALVIDLFCT-------QAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 97 ~~~~~~l~~ll~~~~-~pD~vI~D~~~~-------~~~~~A~~~giP~v~~~~ 141 (436)
+..+ .+.+++++++ +||+|++|-+-. .|..++-.+++|.|.+.=
T Consensus 74 RE~P-~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK 125 (206)
T PF04493_consen 74 RELP-CILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAK 125 (206)
T ss_dssp GTHH-HHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEES
T ss_pred hhHH-HHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeC
Confidence 3456 6667888887 899999995322 244677788999987643
No 466
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.19 E-value=1e+02 Score=31.02 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..||++...++.+ .+-...|++.|+++ ||+|.++.++.
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~-G~~V~VvmT~s 107 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKER-GAHVRCVLTKA 107 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhC-cCEEEEEECcC
Confidence 4678888777664 56899999999998 99999999998
No 467
>PRK07478 short chain dehydrogenase; Provisional
Probab=27.13 E-value=3.6e+02 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+.++++-.+ |.+ =..+|+.|.++ |++|.+++...
T Consensus 7 k~~lItGas-~gi--G~~ia~~l~~~-G~~v~~~~r~~ 40 (254)
T PRK07478 7 KVAIITGAS-SGI--GRAAAKLFARE-GAKVVVGARRQ 40 (254)
T ss_pred CEEEEeCCC-ChH--HHHHHHHHHHC-CCEEEEEeCCH
Confidence 355555443 322 25688999998 99998887543
No 468
>PRK12937 short chain dehydrogenase; Provisional
Probab=27.07 E-value=3.4e+02 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCeEEEEEcCC
Q 047445 28 LEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 28 l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
..+|+.|.++ |++|++.....
T Consensus 19 ~~la~~l~~~-g~~v~~~~~~~ 39 (245)
T PRK12937 19 AAIARRLAAD-GFAVAVNYAGS 39 (245)
T ss_pred HHHHHHHHHC-CCEEEEecCCC
Confidence 5788999999 99998776443
No 469
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=26.97 E-value=3.8e+02 Score=26.30 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=50.7
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHH
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITR 90 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (436)
|+|+++-.+..+| .|++++++. |+.+++++.+. ......... ..+..++ ..
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~-~~~~~~~~~~~------~~~~~~~~~--~~~~~~~--------~~------- 51 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQS-PLVKYVYVAPG------NAGTARLAK--NKNVAIS--------IT------- 51 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhC-CCccEEEEECC------CHHHhhhcc--cccccCC--------CC-------
Confidence 5788887777744 678888887 88777776655 111111100 1111111 00
Q ss_pred HHHHHHHhhhHHHHHHHHhcCCCcEEEEcCCcc---hHHHHHHHcCCCeEE
Q 047445 91 LHAIVDESLKSSLKAVLIELCNPRALVIDLFCT---QAFEICSQLSIPTYS 138 (436)
Q Consensus 91 ~~~~~~~~~~~~l~~ll~~~~~pD~vI~D~~~~---~~~~~A~~~giP~v~ 138 (436)
... .+.++.++. ++|+++...-.. ......+.+|+|++.
T Consensus 52 -------d~~-~l~~~~~~~-~id~vi~~~e~~l~~~~~~~l~~~gi~~~g 93 (423)
T TIGR00877 52 -------DIE-ALVEFAKKK-KIDLAVIGPEAPLVLGLVDALEEAGIPVFG 93 (423)
T ss_pred -------CHH-HHHHHHHHh-CCCEEEECCchHHHHHHHHHHHHCCCeEEC
Confidence 122 455677777 999998664322 223566778988653
No 470
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.85 E-value=4.1e+02 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVIT 48 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~ 48 (436)
++++++-.+. .--..+|+.|.++ |++|+.+...
T Consensus 3 k~vlItG~sg---~iG~~la~~L~~~-g~~vi~~~r~ 35 (256)
T PRK12745 3 PVALVTGGRR---GIGLGIARALAAA-GFDLAINDRP 35 (256)
T ss_pred cEEEEeCCCc---hHHHHHHHHHHHC-CCEEEEEecC
Confidence 3455554322 3446789999999 9999887643
No 471
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=26.76 E-value=1.2e+02 Score=27.22 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhc-CCCeEEEEEcCC
Q 047445 13 VAVLASPGLGHVVPLLEFAKRLVIN-HGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~p~~GH~~P~l~LA~~L~~r-~Gh~Vt~~~~~~ 49 (436)
|++--.++.+=+.-...|.+.|+++ +||+|.++.++.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 4444444444447999999999874 279999999998
No 472
>PRK13057 putative lipid kinase; Reviewed
Probab=26.74 E-value=1.3e+02 Score=27.80 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=24.4
Q ss_pred CccCceeeeeccCcccHHHHH----HcCCcEeeccc
Q 047445 360 RHSSTGGFLSHCGWNSSLESI----CHGVPMIAWPL 391 (436)
Q Consensus 360 ~~~~v~~~I~HGG~~s~~eal----~~GvP~l~~P~ 391 (436)
...| .+|.-||=||+.|++ ..++|+-++|.
T Consensus 49 ~~~d--~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVD--LVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCC--EEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 4556 599999999999886 34789999996
No 473
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=26.71 E-value=38 Score=34.76 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.0
Q ss_pred eeeeccC------cccHHHHHHcCCcEeecc
Q 047445 366 GFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 366 ~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
++++|.| .+++.||...++|||++-
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 66 VCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred EEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 5777777 458899999999999995
No 474
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=26.69 E-value=4.4e+02 Score=23.14 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.+=|+|=-.-|.|-..-.-.|++.|.++ |.+|++.-.|.
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~-g~~v~~trEP~ 41 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEER-GIKVVLTREPG 41 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 3445566667999999999999999999 99999988887
No 475
>PRK13054 lipid kinase; Reviewed
Probab=26.64 E-value=2.3e+02 Score=26.34 Aligned_cols=79 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhHHHhcCCCcEEecccC
Q 047445 274 VIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGFLQRTHGMGMVVPSWA 353 (436)
Q Consensus 274 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~ 353 (436)
.+.++ |... ....+..++..|+..+..+.+....... -..-+
T Consensus 7 ~~i~N-~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~~~-----------------------------------~a~~~ 48 (300)
T PRK13054 7 LLILN-GKSA--GNEELREAVGLLREEGHTLHVRVTWEKG-----------------------------------DAARY 48 (300)
T ss_pred EEEEC-CCcc--chHHHHHHHHHHHHcCCEEEEEEecCCC-----------------------------------cHHHH
Q ss_pred ChhhhcCccCceeeeeccCcccHHHHHHc--------CCcEeecccc
Q 047445 354 PQVEILRHSSTGGFLSHCGWNSSLESICH--------GVPMIAWPLY 392 (436)
Q Consensus 354 pq~~lL~~~~v~~~I~HGG~~s~~eal~~--------GvP~l~~P~~ 392 (436)
-+.......+ ++|..||=||++|++.. .+|+-++|..
T Consensus 49 a~~~~~~~~d--~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 49 VEEALALGVA--TVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHcCCC--EEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
No 476
>PRK13059 putative lipid kinase; Reviewed
Probab=26.53 E-value=2.2e+02 Score=26.46 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=23.2
Q ss_pred ccCceeeeeccCcccHHHHH---H---cCCcEeeccc
Q 047445 361 HSSTGGFLSHCGWNSSLESI---C---HGVPMIAWPL 391 (436)
Q Consensus 361 ~~~v~~~I~HGG~~s~~eal---~---~GvP~l~~P~ 391 (436)
..+ .+|.-||=||+.|++ . .++|+-++|.
T Consensus 56 ~~d--~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYK--YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCC--EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 445 599999999988875 2 3589999996
No 477
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=26.47 E-value=1.1e+02 Score=26.83 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 8 SSRPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 8 ~~~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
.++.||++...++. -.+-...|.+.|+ + ||+|.++.++.
T Consensus 17 ~~~k~IllgVtGSI-AAyk~~~lvr~L~-~-g~~V~VvmT~~ 55 (209)
T PLN02496 17 PRKPRILLAASGSV-AAIKFGNLCHCFS-E-WAEVRAVVTKA 55 (209)
T ss_pred CCCCEEEEEEeCHH-HHHHHHHHHHHhc-C-CCeEEEEEChh
Confidence 34568888877765 4566677999997 6 99999999998
No 478
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=26.45 E-value=2.1e+02 Score=26.54 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCCcEEEE
Q 047445 102 SLKAVLIELCNPRALVI 118 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~ 118 (436)
.+.++|+++ +||+||+
T Consensus 114 ~l~~~Ir~~-~PdvViT 129 (284)
T TIGR03445 114 ALVAVIREV-RPHVVVT 129 (284)
T ss_pred HHHHHHHHh-CCcEEEe
Confidence 677788999 9999996
No 479
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=26.40 E-value=1.9e+02 Score=27.17 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=75.8
Q ss_pred hhHHhhhhcCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCcccccccCCCCCCCccCcCchhH
Q 047445 259 DEECLAWLGKQPSDSVIFVAPGSGGTLTAEQVIEMAWGLEQSKQRFIWVVRMPSDASASATFFNVGSDVNDPQAYLPEGF 338 (436)
Q Consensus 259 ~~~l~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 338 (436)
.+++.++++.-....+-.-++||.+. -.|+++-+..|-+-+.+...... ......|-.
T Consensus 4 r~~ileil~~Y~~~~i~Iat~gSHSa------L~Il~GAK~EGF~Ti~v~~~gr~---------------~~Y~~f~~a- 61 (361)
T COG1759 4 RKEILEILENYDLEDITIATIGSHSA------LQILDGAKEEGFRTIAVCQRGRE---------------KPYEKFPVA- 61 (361)
T ss_pred HHHHHHHHHhccccceEEEEeecchH------HHHhhhHHhcCCcEEEEEecCcc---------------chHHhhchh-
Confidence 35677777776444466677777642 45677777777777666553321 111112110
Q ss_pred HHhcCCCcEEecccCC------hhhhcCccCceeeeeccCcccHH--H--HHHcCCcEeeccc---cc-cchhHHHHHHh
Q 047445 339 LQRTHGMGMVVPSWAP------QVEILRHSSTGGFLSHCGWNSSL--E--SICHGVPMIAWPL---YA-EQKMNAAMLTE 404 (436)
Q Consensus 339 ~~~~~~~nv~v~~~~p------q~~lL~~~~v~~~I~HGG~~s~~--e--al~~GvP~l~~P~---~~-DQ~~nA~~v~~ 404 (436)
.+.+++.+|-+ |..++..-. .||-||-..... + .-.+-|||..-=. |. ||...-..+++
T Consensus 62 -----~e~i~v~~f~dil~~~iqe~L~~~n~--I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lLek 134 (361)
T COG1759 62 -----DEVIIVDKFSDILNEEIQEELRELNA--IFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLLEK 134 (361)
T ss_pred -----heEEEechhHHHhhHHHHHHHHHcCe--EEecCCceEEEecchhhhhcccCcccccHhHhhhhcchhhHHHHHHH
Confidence 02455555543 233444433 366666542111 1 1223455554332 22 66666666654
Q ss_pred hhcceeeeccccccccccccccc
Q 047445 405 ETRGGRKASNRIGKESDRTGRDR 427 (436)
Q Consensus 405 ~~G~g~~~~~~~~~~~~~~~~~~ 427 (436)
+|+-+...--+|+++.+-+..-
T Consensus 135 -Agi~~P~~~~~PeeIdr~VIVK 156 (361)
T COG1759 135 -AGLRIPKKYKSPEEIDRPVIVK 156 (361)
T ss_pred -cCCCCCcccCChHHcCCceEEe
Confidence 8888888888899998876543
No 480
>PRK10037 cell division protein; Provisional
Probab=26.24 E-value=1e+02 Score=27.83 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=29.2
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 13 VAVLAS-PGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 13 il~~~~-p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
|.+... +|-|-..-...||..|+++ |++|.++=...
T Consensus 4 iav~n~KGGvGKTT~a~nLA~~La~~-G~rVLlID~D~ 40 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQML-GENVLVIDACP 40 (250)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHhc-CCcEEEEeCCh
Confidence 344444 6889999999999999999 99999995544
No 481
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=26.18 E-value=3.1e+02 Score=23.63 Aligned_cols=38 Identities=37% Similarity=0.509 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCchhHHHHHhhcCCCCceEEecC
Q 047445 25 VPLLEFAKRLVINHGVHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLP 73 (436)
Q Consensus 25 ~P~l~LA~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (436)
.-+..+|+.|.+. |+++ +++.. ..+++++.| +.+..+.
T Consensus 11 ~~l~~lAk~L~~l-Gf~I--~AT~G------TAk~L~e~G--I~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVEL-GVEI--LSTGG------TAKFLKEAG--IPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHC-CCEE--EEccH------HHHHHHHcC--CeEEEhh
Confidence 3478999999998 9887 35555 566777766 6555443
No 482
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=26.03 E-value=2e+02 Score=21.54 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHhC--CCcEEEEE
Q 047445 273 SVIFVAPGSGGTLTAEQVIEMAWGLEQS--KQRFIWVV 308 (436)
Q Consensus 273 ~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~ 308 (436)
.+|+++.||........+..+.+.+++. ...+-+.+
T Consensus 1 ~ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 38 (101)
T cd03416 1 ALLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAF 38 (101)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 3789999997544455677788888654 34555554
No 483
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=25.97 E-value=2.4e+02 Score=25.49 Aligned_cols=79 Identities=6% Similarity=0.044 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCchhHHHHHhhcCCCCceEEecCCCCCCCCCCCCchHHHHHHHHHHHhhhHHHHHHHHhcCCCcEEEEc
Q 047445 40 VHVRFLVITTNEASAAQEKLLRSLPDGLDVVDLPPVDVSAVTRDDMPVITRLHAIVDESLKSSLKAVLIELCNPRALVID 119 (436)
Q Consensus 40 h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~pD~vI~D 119 (436)
....+.+++. +..+.+.+| ++...+-... + +.+... +.+. .+.+.+++- +..+|+++
T Consensus 150 ~~~~v~~h~~------~~Y~~~~~g--l~~~~~~~~~-----~-~~~ps~-------~~l~-~l~~~ik~~-~v~~i~~e 206 (256)
T PF01297_consen 150 GRPVVVYHDA------FQYFAKRYG--LKVIGVIEIS-----P-GEEPSP-------KDLA-ELIKLIKEN-KVKCIFTE 206 (256)
T ss_dssp GGEEEEEEST------THHHHHHTT---EEEEEESSS-----S-SSSS-H-------HHHH-HHHHHHHHT-T-SEEEEE
T ss_pred CCeEEEEChH------HHHHHHhcC--Cceeeeeccc-----c-ccCCCH-------HHHH-HHHHHhhhc-CCcEEEec
Confidence 3566667777 777888887 7666544111 1 111111 1223 455677776 99999999
Q ss_pred CCcchH--HHHHHHcCCCeEEEec
Q 047445 120 LFCTQA--FEICSQLSIPTYSFVT 141 (436)
Q Consensus 120 ~~~~~~--~~~A~~~giP~v~~~~ 141 (436)
...... ..+|+..|+|.+.+.+
T Consensus 207 ~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 207 PQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp TTS-THHHHHHHHCCT-EEEESST
T ss_pred CCCChHHHHHHHHHcCCcEEEeCC
Confidence 766543 4699999999876543
No 484
>PRK14071 6-phosphofructokinase; Provisional
Probab=25.91 E-value=53 Score=31.69 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=31.7
Q ss_pred hhcCccCceeeeeccCcccHHHHHH----cCCcEeeccccccchh
Q 047445 357 EILRHSSTGGFLSHCGWNSSLESIC----HGVPMIAWPLYAEQKM 397 (436)
Q Consensus 357 ~lL~~~~v~~~I~HGG~~s~~eal~----~GvP~l~~P~~~DQ~~ 397 (436)
+.|..-++.++|.=||.+|+.-+.. .|+|+|++|-..|-..
T Consensus 101 ~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl 145 (360)
T PRK14071 101 DGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDV 145 (360)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCC
Confidence 4566667778999999999866643 4999999998877433
No 485
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=25.76 E-value=2.9e+02 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 10 RPHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 10 ~~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+++-++++..+.|= =..+|+.|+++ ||+|.++.=..
T Consensus 5 ~~~~~lITGASsGI---G~~~A~~lA~~-g~~liLvaR~~ 40 (265)
T COG0300 5 KGKTALITGASSGI---GAELAKQLARR-GYNLILVARRE 40 (265)
T ss_pred CCcEEEEECCCchH---HHHHHHHHHHC-CCEEEEEeCcH
Confidence 34455555554432 26899999999 99999998665
No 486
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=25.69 E-value=1.4e+02 Score=27.12 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 12 HVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 12 ~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
=+++...|+.|...-++.+|..+..++|+.|.|++.+.
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm 58 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM 58 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 46677789999999999999999987459999999987
No 487
>PRK09620 hypothetical protein; Provisional
Probab=25.68 E-value=1.2e+02 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=22.9
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 15 VLASPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 15 ~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
+++..+.|-+= ..||++|.++ |++|+++....
T Consensus 22 ~itN~SSGfiG--s~LA~~L~~~-Ga~V~li~g~~ 53 (229)
T PRK09620 22 GHTNMAKGTIG--RIIAEELISK-GAHVIYLHGYF 53 (229)
T ss_pred EecCCCcCHHH--HHHHHHHHHC-CCeEEEEeCCC
Confidence 33444445443 6789999999 99999998654
No 488
>PRK07890 short chain dehydrogenase; Provisional
Probab=25.67 E-value=3.7e+02 Score=23.81 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCeEEEEEcCC
Q 047445 27 LLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
=..+|+.|.++ |++|+++.-..
T Consensus 18 G~~la~~l~~~-G~~V~~~~r~~ 39 (258)
T PRK07890 18 GRTLAVRAARA-GADVVLAARTA 39 (258)
T ss_pred HHHHHHHHHHc-CCEEEEEeCCH
Confidence 36788899998 99998886543
No 489
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=25.62 E-value=62 Score=27.18 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.3
Q ss_pred eeeeeccC------cccHHHHHHcCCcEeecc
Q 047445 365 GGFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 365 ~~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
+++++|.| .+++.+|...++|||++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 35777777 458899999999999996
No 490
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.59 E-value=1.2e+02 Score=25.21 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 18 SPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 18 ~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-||.|-..-...||..|++. |++|.++-...
T Consensus 8 kgG~GKTt~a~~LA~~la~~-g~~vllvD~D~ 38 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKL-GYKVGLLDADI 38 (169)
T ss_pred CCcCChhHHHHHHHHHHHHc-CCcEEEEeCCC
Confidence 37899999999999999999 99999987654
No 491
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.52 E-value=1e+02 Score=26.74 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC-------CcEEEEcCCcchHHHHHHHcCCCeEEE
Q 047445 101 SSLKAVLIELCN-------PRALVIDLFCTQAFEICSQLSIPTYSF 139 (436)
Q Consensus 101 ~~l~~ll~~~~~-------pD~vI~D~~~~~~~~~A~~~giP~v~~ 139 (436)
.+++.+++.. + ..+||+|.-...++.-|++.|||.+.+
T Consensus 12 SNlqaiida~-~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~ 56 (200)
T COG0299 12 SNLQAIIDAI-KGGKLDAEIVAVISDKADAYALERAAKAGIPTVVL 56 (200)
T ss_pred ccHHHHHHHH-hcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEe
No 492
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=25.51 E-value=1e+02 Score=30.38 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHhcCCCeEEEEEc
Q 047445 11 PHVAVLASPGLGHVVPLLEFAKRLVINHGVHVRFLVI 47 (436)
Q Consensus 11 ~~il~~~~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~ 47 (436)
||||++-.++..| +|++.|++..|+.+.++.+
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~~ 32 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVAP 32 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEeC
Confidence 6899999997777 4999998863544555543
No 493
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=25.49 E-value=4.9e+02 Score=24.20 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCcEEEEcCCcchHHHHHHHcCCCeEEEec
Q 047445 103 LKAVLIELCNPRALVIDLFCTQAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 103 l~~ll~~~~~pD~vI~D~~~~~~~~~A~~~giP~v~~~~ 141 (436)
+..+++ +-|++|+- ..+...+|..+|+|.+.++.
T Consensus 248 l~ali~---~a~l~I~~--DSgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 248 VAALLA---GADAVVGV--DTGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred HHHHHH---cCCEEEeC--CChHHHHHHHcCCCEEEEEC
Confidence 344555 56888876 34566899999999998864
No 494
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.41 E-value=1.1e+02 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEEEcCC
Q 047445 18 SPGLGHVVPLLEFAKRLVINHGVHVRFLVITT 49 (436)
Q Consensus 18 ~p~~GH~~P~l~LA~~L~~r~Gh~Vt~~~~~~ 49 (436)
-+|-|-..-...||..|+++ |++|.++-...
T Consensus 7 kGG~GKTt~a~~la~~la~~-g~~VlliD~D~ 37 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARK-GKKVLLIDLDP 37 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TS-EEEEEEST
T ss_pred CCCccHHHHHHHHHhccccc-cccccccccCc
Confidence 47899999999999999998 99999999865
No 495
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=25.41 E-value=4e+02 Score=27.28 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.8
Q ss_pred HhhhHHHHHHHHhcCCCcEEE----EcCCcchHHHHHHHcCCCeEEEecch
Q 047445 97 ESLKSSLKAVLIELCNPRALV----IDLFCTQAFEICSQLSIPTYSFVTTS 143 (436)
Q Consensus 97 ~~~~~~l~~ll~~~~~pD~vI----~D~~~~~~~~~A~~~giP~v~~~~~~ 143 (436)
..+.+.++..++.. .+|.+| +|-..++.+..|.++++|.|++...+
T Consensus 75 elIAdsiE~~~~~~-~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 75 EIIADSVETMVNAH-RFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHHHHHhcC-CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 33443566666666 888887 68888888899999999999886654
No 496
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=25.34 E-value=2.2e+02 Score=24.22 Aligned_cols=59 Identities=8% Similarity=-0.090 Sum_probs=28.6
Q ss_pred eeeeccCcccHHHHHH--cCCcEeeccccccchhHHHHHHhhhcc-eeeecccccccccccccccc
Q 047445 366 GFLSHCGWNSSLESIC--HGVPMIAWPLYAEQKMNAAMLTEETRG-GRKASNRIGKESDRTGRDRE 428 (436)
Q Consensus 366 ~~I~HGG~~s~~eal~--~GvP~l~~P~~~DQ~~nA~~v~~~~G~-g~~~~~~~~~~~~~~~~~~~ 428 (436)
.++.++|++.+..-.. ++-.... ......++.+. +++.+|+ +.+..+ .+++.++++++.
T Consensus 100 vV~nN~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~-~a~a~G~~~~~v~~--~~el~~al~~a~ 161 (186)
T cd02015 100 VILNNGSLGMVRQWQELFYEGRYSH-TTLDSNPDFVK-LAEAYGIKGLRVEK--PEELEAALKEAL 161 (186)
T ss_pred EEEECCccHHHHHHHHHHcCCceee-ccCCCCCCHHH-HHHHCCCceEEeCC--HHHHHHHHHHHH
Confidence 5888888887654321 2111110 00111234444 4454555 344443 667777776654
No 497
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.29 E-value=3.8e+02 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCeEEEEEc
Q 047445 27 LLEFAKRLVINHGVHVRFLVI 47 (436)
Q Consensus 27 ~l~LA~~L~~r~Gh~Vt~~~~ 47 (436)
=..+++.|.++ |++|+++..
T Consensus 17 G~~~a~~l~~~-g~~v~~~~~ 36 (250)
T PRK08063 17 GKAIALRLAEE-GYDIAVNYA 36 (250)
T ss_pred HHHHHHHHHHC-CCEEEEEcC
Confidence 35689999998 999987543
No 498
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=25.22 E-value=5.4e+02 Score=23.63 Aligned_cols=39 Identities=5% Similarity=0.037 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCcEEEEcCCcch--HHHHHHHcCCCeEEEec
Q 047445 102 SLKAVLIELCNPRALVIDLFCTQ--AFEICSQLSIPTYSFVT 141 (436)
Q Consensus 102 ~l~~ll~~~~~pD~vI~D~~~~~--~~~~A~~~giP~v~~~~ 141 (436)
.+.+.+++- +..+|+++..... +-.+|+..|++.+.+.+
T Consensus 211 ~l~~~ik~~-~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 211 ELVEFVKKS-DVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHc-CCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 455566666 8999999986653 33699999999876543
No 499
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=25.21 E-value=1.7e+02 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=20.7
Q ss_pred eeeeccC------cccHHHHHHcCCcEeecc
Q 047445 366 GFLSHCG------WNSSLESICHGVPMIAWP 390 (436)
Q Consensus 366 ~~I~HGG------~~s~~eal~~GvP~l~~P 390 (436)
+++.|.| .+++.+|-..++|||++.
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 4666666 568999999999999995
No 500
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.19 E-value=1e+02 Score=27.96 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCcEEEEcCCcc-----hHHHHHHHcCCCeEEEec
Q 047445 103 LKAVLIELCNPRALVIDLFCT-----QAFEICSQLSIPTYSFVT 141 (436)
Q Consensus 103 l~~ll~~~~~pD~vI~D~~~~-----~~~~~A~~~giP~v~~~~ 141 (436)
-+.+++++ +.|+||+-..-- .=+.+|+.+|||+|.+--
T Consensus 188 n~all~q~-~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~R 230 (257)
T COG2099 188 NKALLEQY-RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIER 230 (257)
T ss_pred HHHHHHHh-CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEec
Confidence 45688888 999999875333 234799999999998643
Done!