BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047447
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 58 MFKSLTSLEIID--CQNFKILPYE-LGNLKALETLIVDGTLIREVPE-SLGQLSSLKILV 113
+F SLT L + + LP L +L+ L + ++ VPE + +L+ LK L
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 114 LTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
L NN LKR+PE + + L LK L L +NP
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 98 EVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146
+ P+ +LS L+ + GL LP++ Q + L+ L L+ NPL+ LP
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALP 143
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 80 LGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVL 137
L L L LI+ G ++ +P +L++LK LVL N L+ LP+ ++L++L L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 138 SDNPLKILPK 147
+ N L+ LPK
Sbjct: 141 AHNQLQSLPK 150
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 83 LKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNP 141
L + L + G + ++ +L +L++L L+LT N L+ LP ++L++LK LVL +N
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 142 LKILP 146
L+ LP
Sbjct: 121 LQSLP 125
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 80 LGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVL 137
L L L LI+ G ++ +P +L++LK LVL N L+ LP+ ++L++L L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 138 SDNPLKILPK 147
N L+ LPK
Sbjct: 141 YHNQLQSLPK 150
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 83 LKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNP 141
L + L + G + ++ +L +L++L L+LT N L+ LP ++L++LK LVL +N
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 142 LKILP 146
L+ LP
Sbjct: 121 LQSLP 125
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 103 LGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILP 146
+L++L L L NN L+ LPE ++L+ LK+L L+DN LK +P
Sbjct: 153 FDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 65 LEIIDCQNFKILP--YELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRL 122
LE+I+ F LP +E+ KA L ++ PE+ L +L+ L+++N G+K L
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYIN-------PEAFQNLPNLQYLLISNTGIKHL 119
Query: 123 PESLNQLSSLKRLVLS 138
P+ ++++ SL++++L
Sbjct: 120 PD-VHKIHSLQKVLLD 134
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 65 LEIIDCQNFKILP--YELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRL 122
LE+I+ F LP +E+ KA L ++ PE+ L +L+ L+++N G+K L
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYIN-------PEAFQNLPNLQYLLISNTGIKHL 119
Query: 123 PESLNQLSSLKRLVLS 138
P+ ++++ SL++++L
Sbjct: 120 PD-VHKIHSLQKVLLD 134
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKAL---ETLIVDGTLIREVPESL-GQLSSLKILVLT 115
++L +L ++D ++ LG L+ L + L + G ++ +P L L+ L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 116 NNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
NN L LP L N L +L L+L +N L +PK
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKAL---ETLIVDGTLIREVPESL-GQLSSLKILVLT 115
++L +L ++D ++ LG L+ L + L + G ++ +P L L+ L L
Sbjct: 98 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 116 NNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
NN L LP L N L +L L+L +N L +PK
Sbjct: 158 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 190
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKAL---ETLIVDGTLIREVPESL-GQLSSLKILVLT 115
++L +L ++D ++ LG L+ L + L + G ++ +P L L+ L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 116 NNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
NN L LP L N L +L L+L +N L +PK
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKAL---ETLIVDGTLIREVPESL-GQLSSLKILVLT 115
++L +L ++D ++ LG L+ L + L + G ++ +P L L+ L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 116 NNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
NN L LP L N L +L L+L +N L +PK
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKAL---ETLIVDGTLIREVPESL-GQLSSLKILVLT 115
++L +L ++D ++ LG L+ L + L + G ++ +P L L+ L L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 116 NNGLKRLPESL-NQLSSLKRLVLSDNPLKILPK 147
NN L LP L N L +L L+L +N L +PK
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 67 IIDCQN--FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLP- 123
++ C N K+LP G + + L +DG VP+ L L ++ L+NN + L
Sbjct: 14 VVRCSNKGLKVLPK--GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN 71
Query: 124 ESLNQLSSLKRLVLSDNPLKILP 146
+S + ++ L L+LS N L+ +P
Sbjct: 72 QSFSNMTQLLTLILSYNRLRCIP 94
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 72 NFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSS 131
+ +LP EL + L+V G + +P L SL + N L RLPESL LSS
Sbjct: 235 SLPVLPSEL------KELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESLIHLSS 285
Query: 132 LKRLVLSDNPL 142
+ L NPL
Sbjct: 286 ETTVNLEGNPL 296
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 67 IIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLPES 125
+++CQN ++ G + L ++ I ++ P L +L+ L +N L +P
Sbjct: 16 LVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG 75
Query: 126 -LNQLSSLKRLVLSDNPLKILPK 147
++L+ L +L L+DN LK +P+
Sbjct: 76 VFDKLTQLTQLDLNDNHLKSIPR 98
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 75 ILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLK-RLPESLNQLSSL 132
+P E+G++ L L + I +P+ +G L L IL L++N L R+P++++ L+ L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 133 KRLVLSDNPLK 143
+ LS+N L
Sbjct: 704 TEIDLSNNNLS 714
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 76 LPYELGNLKALETLIVD-------------------------GTLIREVPESLGQLSSLK 110
+P EL +K LETLI+D L E+P+ +G+L +L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 111 ILVLTNNGLK-RLPESLNQLSSLKRLVLSDN 140
IL L+NN +P L SL L L+ N
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 75 ILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLK-RLPESLNQLSSL 132
+P E+G++ L L + I +P+ +G L L IL L++N L R+P++++ L+ L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 133 KRLVLSDNPLK 143
+ LS+N L
Sbjct: 707 TEIDLSNNNLS 717
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 26/91 (28%)
Query: 76 LPYELGNLKALETLIVD-------------------------GTLIREVPESLGQLSSLK 110
+P EL +K LETLI+D L E+P+ +G+L +L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 111 ILVLTNNGLK-RLPESLNQLSSLKRLVLSDN 140
IL L+NN +P L SL L L+ N
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
>pdb|2K4W|A Chain A, The Solution Structure Of The Monomeric Copper, Zinc
Superox Dismutase From Salmonella Enterica
Length = 154
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 94 TLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRL 135
T E PE G L L +LV+ N+G+ P + +L SL +
Sbjct: 79 TGKHEGPEGQGHLGDLPVLVVNNDGIATEPVTAPRLKSLDEV 120
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 64 SLEIIDCQNFKILPYELGNLKALETL-IVDGTLIREVPESLGQLSSLKILVLTNNGLKRL 122
S +DC + G + L + D + + P +L+ L L L NN L L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 123 PES-LNQLSSLKRLVLSDNPLKILPK 147
P ++L+ L +L L+DN LK +P+
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQLKSIPR 103
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 64 SLEIIDCQNFKILPYELGNLKALETL-IVDGTLIREVPESLGQLSSLKILVLTNNGLKRL 122
S +DC + G + L + D + + P +L+ L L L NN L L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 123 PES-LNQLSSLKRLVLSDNPLKILPK 147
P ++L+ L +L L+DN LK +P+
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPR 95
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 64 SLEIIDCQNFKILPYELGNLKALETL-IVDGTLIREVPESLGQLSSLKILVLTNNGLKRL 122
S +DC + G + L + D + + P +L+ L L L NN L L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 123 PES-LNQLSSLKRLVLSDNPLKILPK 147
P ++L+ L +L L+DN LK +P+
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPR 95
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 83 LKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDN 140
L +L+ L++ + V P + L L L L N L LP E+L L +L+ L L+DN
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Query: 141 PL 142
P
Sbjct: 235 PW 236
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 83 LKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDN 140
L +L+ L++ + V P + L L L L N L LP E+L L +L+ L L+DN
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Query: 141 PL 142
P
Sbjct: 236 PW 237
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 24/84 (28%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGL 119
++LT L++ CQ LE L P + LSSL++L + +N L
Sbjct: 470 RNLTFLDLSQCQ--------------LEQL---------SPTAFNSLSSLQVLNMASNQL 506
Query: 120 KRLPES-LNQLSSLKRLVLSDNPL 142
K +P+ ++L+SL+++ L NP
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPW 530
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
SL+ LT G LP +L L +L+ L LSDNPL
Sbjct: 87 SLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPL 121
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKAL-ETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118
+SL SL ++D N K L +L L E L V + ++PE L S LKI+ + NN
Sbjct: 111 QSLKSL-LVDNNNLKAL----SDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS 164
Query: 119 LKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150
LK+LP+ SL+ + +N L+ LP++ N
Sbjct: 165 LKKLPD---LPPSLEFIAAGNNQLEELPELQN 193
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 85 ALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKI 144
+LE+++ ++ E+PE L L L + NN LK LP+ SL+ L + DN L
Sbjct: 216 SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD 271
Query: 145 LPKI 148
LP++
Sbjct: 272 LPEL 275
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
Query: 65 LEIIDCQN--FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRL 122
L+IID N K LP +L +LE + + E+PE L L L + NN LK+L
Sbjct: 155 LKIIDVDNNSLKKLP-DLP--PSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKL 210
Query: 123 PE-SLNQLSSLKRLVLSDNPLKILPKILN 150
P+ L SL+ +V +N L+ LP++ N
Sbjct: 211 PDLPL----SLESIVAGNNILEELPELQN 235
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 57 CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN 116
C + TS+ L E +LK+L + D +L+SL L L
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD------------ELTSLTQLYLGG 61
Query: 117 NGLKRLPES-LNQLSSLKRLVLSDNPLKILP 146
N L+ LP N+L+SL L LS N L+ LP
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 106 LSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI 148
S L+ L LT L LP L LS+LK+LVLS N + L +I
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 64 SLEIIDCQN---FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLK 120
S+E I+ Q F I L+ L + T + E+P L LS+LK LVL+ N +
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Query: 121 RLPE-SLNQLSSLKRLVLSDN 140
L + S + SL L + N
Sbjct: 315 NLCQISASNFPSLTHLSIKGN 335
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 60 KSLTSLEIIDCQNFKILPYELGNLKALETL----IVDGTLIREVPESLGQLSSLKILVLT 115
++LT L I + Q+ + L EL +L+ L L IV L P++ L L L+
Sbjct: 31 ENLTELYIENQQHLQHL--ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 116 NNGLKRLPESLNQLSSLKRLVLSDNPLK 143
N L+ L Q SL+ LVLS NPL
Sbjct: 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142
SL+ LT G LP L LS+L+ L L+DNP+
Sbjct: 87 SLQNCGLTEAGCGILPGMLRSLSTLRELHLNDNPM 121
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 100 PESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKIL 149
P + L+ + L+NN + L P++ L SL LVL N + LPK L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 100 PESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKIL 149
P + L+ + L+NN + L P++ L SL LVL N + LPK L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|1ORD|A Chain A, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
pdb|1ORD|B Chain B, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
Length = 730
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK-ILPKI 148
+PE L+S+ L+ ++ + QL L+RL+ D PLK +LP I
Sbjct: 530 IPEK-SDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEEDAPLKQVLPSI 579
>pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr)
Length = 730
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK-ILPKI 148
+PE L+S+ L+ ++ + QL L+RL+ D PLK +LP I
Sbjct: 530 IPEK-SDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEEDAPLKQVLPSI 579
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 99 VPESLGQLSSLKILVLTNNGLK 120
VP+++GQL+ L++L L ++G K
Sbjct: 97 VPDAIGQLTELEVLALGSHGEK 118
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 109 LKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPL 142
L+ LVLT+NG+ + E S + L SL+ L LS N L
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,513,593
Number of Sequences: 62578
Number of extensions: 107516
Number of successful extensions: 323
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 70
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)