Query 047447
Match_columns 150
No_of_seqs 132 out of 1344
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 11:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 1.5E-18 3.2E-23 138.3 9.8 146 2-147 92-254 (968)
2 PLN00113 leucine-rich repeat r 99.8 4E-18 8.6E-23 135.8 10.0 142 2-143 117-273 (968)
3 KOG0617 Ras suppressor protein 99.7 2.2E-20 4.8E-25 118.8 -4.0 147 2-150 32-193 (264)
4 KOG0444 Cytoskeletal regulator 99.7 5.6E-18 1.2E-22 126.0 -1.1 147 1-149 101-287 (1255)
5 KOG0444 Cytoskeletal regulator 99.6 2.3E-16 4.9E-21 117.6 -0.9 146 3-150 126-313 (1255)
6 KOG0472 Leucine-rich repeat pr 99.5 2.7E-16 5.8E-21 111.5 -2.1 109 39-150 186-295 (565)
7 KOG4194 Membrane glycoprotein 99.5 3.9E-15 8.4E-20 110.0 3.5 122 26-147 202-334 (873)
8 KOG4194 Membrane glycoprotein 99.5 9.9E-16 2.2E-20 113.0 -0.7 108 39-146 296-408 (873)
9 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.7E-20 97.3 -2.4 123 26-150 38-170 (264)
10 PLN03210 Resistant to P. syrin 99.5 5.7E-13 1.2E-17 108.1 11.2 105 39-147 781-887 (1153)
11 KOG0618 Serine/threonine phosp 99.4 2.2E-14 4.8E-19 110.2 -0.0 140 2-143 309-465 (1081)
12 KOG0472 Leucine-rich repeat pr 99.4 1.2E-14 2.6E-19 103.3 -2.4 141 4-148 363-545 (565)
13 PRK15387 E3 ubiquitin-protein 99.4 1.6E-12 3.5E-17 100.7 8.4 132 3-143 302-458 (788)
14 PRK15370 E3 ubiquitin-protein 99.4 6.7E-13 1.5E-17 102.9 6.0 79 61-146 326-404 (754)
15 PRK15370 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 101.5 6.5 138 3-149 220-386 (754)
16 PRK15387 E3 ubiquitin-protein 99.3 1.3E-11 2.8E-16 95.8 10.3 67 3-74 242-316 (788)
17 PLN03150 hypothetical protein; 99.3 1.9E-11 4E-16 93.8 8.9 104 39-142 421-527 (623)
18 PLN03210 Resistant to P. syrin 99.3 5.2E-11 1.1E-15 96.9 11.2 97 26-124 594-699 (1153)
19 PF14580 LRR_9: Leucine-rich r 99.2 2.1E-11 4.7E-16 79.1 4.9 83 59-143 41-126 (175)
20 KOG4237 Extracellular matrix p 99.2 5.6E-12 1.2E-16 89.6 2.1 37 2-38 90-133 (498)
21 KOG0532 Leucine-rich repeat (L 99.2 4.4E-13 9.6E-18 98.8 -3.6 121 26-149 126-253 (722)
22 PLN03150 hypothetical protein; 99.2 4.6E-11 9.9E-16 91.7 7.0 88 62-149 420-510 (623)
23 cd00116 LRR_RI Leucine-rich re 99.1 4.7E-11 1E-15 84.5 3.4 105 39-143 140-263 (319)
24 PF13855 LRR_8: Leucine rich r 99.1 1.6E-10 3.6E-15 62.4 4.1 56 86-141 3-60 (61)
25 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 75.5 3.9 97 39-137 45-147 (175)
26 KOG0532 Leucine-rich repeat (L 99.1 3.8E-12 8.3E-17 94.0 -3.6 137 9-149 56-230 (722)
27 PF13855 LRR_8: Leucine rich r 99.1 2.5E-10 5.5E-15 61.6 3.8 60 60-119 1-61 (61)
28 KOG0618 Serine/threonine phosp 99.0 3.2E-12 6.9E-17 98.6 -5.2 89 59-147 358-447 (1081)
29 KOG3207 Beta-tubulin folding c 99.0 4.9E-11 1.1E-15 85.7 -0.3 146 2-147 145-318 (505)
30 KOG1259 Nischarin, modulator o 99.0 1.5E-10 3.3E-15 80.2 1.0 118 26-147 289-416 (490)
31 cd00116 LRR_RI Leucine-rich re 99.0 3.5E-10 7.6E-15 80.0 2.5 105 39-143 111-234 (319)
32 KOG1259 Nischarin, modulator o 98.9 9.4E-11 2E-15 81.2 -0.5 104 39-146 287-390 (490)
33 KOG4237 Extracellular matrix p 98.9 7.4E-11 1.6E-15 84.0 -3.2 116 26-141 72-199 (498)
34 COG4886 Leucine-rich repeat (L 98.8 4.3E-09 9.2E-14 76.9 4.3 116 26-144 168-291 (394)
35 PF12799 LRR_4: Leucine Rich r 98.7 9.2E-09 2E-13 51.6 2.9 39 108-146 2-40 (44)
36 KOG1859 Leucine-rich repeat pr 98.7 3.4E-10 7.4E-15 86.2 -4.4 117 26-146 169-295 (1096)
37 KOG1909 Ran GTPase-activating 98.7 5.4E-09 1.2E-13 73.4 1.5 118 2-120 91-254 (382)
38 COG4886 Leucine-rich repeat (L 98.7 3.2E-08 6.9E-13 72.3 4.4 142 3-147 116-272 (394)
39 KOG3207 Beta-tubulin folding c 98.6 1.9E-08 4.2E-13 72.6 2.2 143 1-143 170-339 (505)
40 KOG4579 Leucine-rich repeat (L 98.6 3E-09 6.6E-14 65.8 -1.9 88 58-146 51-139 (177)
41 PF12799 LRR_4: Leucine Rich r 98.6 1.6E-07 3.4E-12 47.1 4.2 39 85-123 2-40 (44)
42 PRK15386 type III secretion pr 98.5 7.7E-07 1.7E-11 64.9 8.5 51 2-53 51-111 (426)
43 KOG4579 Leucine-rich repeat (L 98.5 1.1E-08 2.5E-13 63.3 -1.9 88 61-148 28-118 (177)
44 KOG1909 Ran GTPase-activating 98.4 1.8E-08 3.8E-13 70.9 -2.1 141 2-142 119-310 (382)
45 KOG4658 Apoptotic ATPase [Sign 98.4 2.5E-07 5.5E-12 73.6 3.1 102 39-140 548-652 (889)
46 KOG1644 U2-associated snRNP A' 98.3 3.7E-06 8.1E-11 55.4 6.0 99 39-139 45-149 (233)
47 COG5238 RNA1 Ran GTPase-activa 98.1 1.2E-06 2.6E-11 60.4 1.2 120 1-121 90-256 (388)
48 KOG4658 Apoptotic ATPase [Sign 98.0 5.9E-06 1.3E-10 66.0 3.6 85 58-142 543-630 (889)
49 PRK15386 type III secretion pr 97.8 7.8E-05 1.7E-09 54.7 6.8 105 26-140 57-187 (426)
50 KOG1859 Leucine-rich repeat pr 97.8 5.9E-07 1.3E-11 69.2 -4.4 101 40-145 168-269 (1096)
51 KOG0531 Protein phosphatase 1, 97.7 1.2E-05 2.6E-10 59.4 0.4 85 56-143 114-199 (414)
52 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.2E-09 48.8 4.5 83 60-144 42-127 (233)
53 KOG2120 SCF ubiquitin ligase, 97.6 1.8E-06 3.9E-11 60.3 -4.1 102 39-140 237-373 (419)
54 KOG3665 ZYG-1-like serine/thre 97.5 6.1E-05 1.3E-09 59.0 2.4 77 39-116 125-204 (699)
55 KOG0531 Protein phosphatase 1, 97.5 5.2E-05 1.1E-09 56.0 1.9 90 55-147 90-179 (414)
56 KOG3665 ZYG-1-like serine/thre 97.4 0.00012 2.6E-09 57.4 2.4 103 39-143 151-263 (699)
57 KOG2982 Uncharacterized conser 97.2 0.00028 6E-09 49.6 2.3 60 84-143 199-262 (418)
58 PF00560 LRR_1: Leucine Rich R 97.0 0.00017 3.8E-09 30.3 0.2 18 132-149 2-19 (22)
59 KOG2739 Leucine-rich acidic nu 97.0 0.00074 1.6E-08 46.3 2.8 96 40-137 47-150 (260)
60 KOG2739 Leucine-rich acidic nu 97.0 0.00048 1.1E-08 47.2 1.9 85 57-143 40-129 (260)
61 KOG2982 Uncharacterized conser 96.8 0.0003 6.5E-09 49.5 0.0 61 58-118 95-157 (418)
62 PF13504 LRR_7: Leucine rich r 96.8 0.00097 2.1E-08 26.1 1.3 16 131-146 2-17 (17)
63 PF00560 LRR_1: Leucine Rich R 96.7 0.0006 1.3E-08 28.6 0.6 17 109-125 2-18 (22)
64 COG5238 RNA1 Ran GTPase-activa 96.5 0.0042 9E-08 43.4 3.9 88 56-143 88-198 (388)
65 KOG2120 SCF ubiquitin ligase, 96.5 0.00059 1.3E-08 48.1 -0.2 79 39-117 289-373 (419)
66 KOG2123 Uncharacterized conser 96.5 9.6E-05 2.1E-09 51.4 -4.2 78 57-136 38-123 (388)
67 smart00369 LRR_TYP Leucine-ric 96.3 0.0033 7.1E-08 27.3 1.7 19 130-148 2-20 (26)
68 smart00370 LRR Leucine-rich re 96.3 0.0033 7.1E-08 27.3 1.7 19 130-148 2-20 (26)
69 PF13306 LRR_5: Leucine rich r 96.2 0.018 3.8E-07 35.2 5.1 82 54-139 29-112 (129)
70 KOG2123 Uncharacterized conser 95.6 0.0014 3E-08 45.9 -1.9 81 59-142 18-100 (388)
71 PF13306 LRR_5: Leucine rich r 95.4 0.074 1.6E-06 32.4 5.6 87 40-132 39-128 (129)
72 KOG0473 Leucine-rich repeat pr 94.4 0.00074 1.6E-08 46.0 -5.6 87 55-142 37-123 (326)
73 KOG3864 Uncharacterized conser 94.1 0.0082 1.8E-07 40.0 -1.1 75 63-137 104-183 (221)
74 smart00364 LRR_BAC Leucine-ric 93.9 0.046 9.9E-07 23.8 1.4 17 131-147 3-19 (26)
75 KOG1947 Leucine rich repeat pr 93.7 0.038 8.3E-07 41.3 1.6 102 39-140 191-305 (482)
76 PF13516 LRR_6: Leucine Rich r 92.8 0.042 9.1E-07 23.2 0.4 17 2-18 1-17 (24)
77 smart00367 LRR_CC Leucine-rich 92.5 0.11 2.3E-06 22.5 1.5 17 2-18 1-17 (26)
78 KOG1947 Leucine rich repeat pr 92.4 0.033 7.1E-07 41.6 -0.3 81 57-137 240-328 (482)
79 KOG4341 F-box protein containi 91.2 0.16 3.4E-06 37.8 2.0 98 39-136 349-458 (483)
80 smart00365 LRR_SD22 Leucine-ri 90.4 0.26 5.7E-06 21.4 1.7 16 130-145 2-17 (26)
81 KOG3864 Uncharacterized conser 89.5 0.044 9.6E-07 36.6 -1.7 80 39-118 104-187 (221)
82 KOG4341 F-box protein containi 87.4 0.42 9.1E-06 35.6 1.9 103 39-141 297-412 (483)
83 smart00368 LRR_RI Leucine rich 87.3 0.45 9.8E-06 20.9 1.3 14 3-16 2-15 (28)
84 KOG0473 Leucine-rich repeat pr 82.3 0.014 3.1E-07 40.0 -6.9 71 80-150 38-108 (326)
85 KOG3763 mRNA export factor TAP 51.4 11 0.00024 29.5 1.8 64 58-121 216-284 (585)
86 KOG3763 mRNA export factor TAP 49.1 13 0.00027 29.1 1.8 13 105-117 242-254 (585)
87 KOG4308 LRR-containing protein 45.6 0.79 1.7E-05 35.0 -4.9 84 59-142 203-302 (478)
88 TIGR00864 PCC polycystin catio 43.4 21 0.00046 33.5 2.5 32 66-97 1-32 (2740)
89 TIGR00864 PCC polycystin catio 38.9 26 0.00056 33.0 2.3 31 42-72 1-31 (2740)
90 smart00446 LRRcap occurring C- 26.4 36 0.00078 14.7 0.7 11 2-12 12-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=1.5e-18 Score=138.26 Aligned_cols=146 Identities=26% Similarity=0.319 Sum_probs=88.9
Q ss_pred CCCCcEEecccCCCccccccCCcc-------ccCCCcCccc-ccc------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIER-LAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~-l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
++.|++|+|++|.+.+.+|...+. +++++|.+.. +|. ++|++++|.+.+..|..++.+++|++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 677888888887777666665431 6666666642 222 56666666555566666666666666666
Q ss_pred ecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC-C
Q 047447 68 IDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK-I 144 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~-~ 144 (150)
++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+++++++|.+.+ +|..++.+++|++|++++|.+. .
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 666666666666666666666666666554 445555566666666666666554 5555555556666666555554 4
Q ss_pred CCC
Q 047447 145 LPK 147 (150)
Q Consensus 145 ~p~ 147 (150)
+|.
T Consensus 252 ~p~ 254 (968)
T PLN00113 252 IPS 254 (968)
T ss_pred cCh
Confidence 443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=4e-18 Score=135.85 Aligned_cols=142 Identities=27% Similarity=0.304 Sum_probs=88.6
Q ss_pred CCCCcEEecccCCCccccccCCcc----ccCCCcCcc-cccc--------cceecccccCCCcCcccccCCCCccEEEee
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC----NIDGGIGIE-RLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~-~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 68 (150)
+++|++|++++|.+.+.+|..... +++++|.+. .+|. ++|++++|...+.+|..+..+++|++|+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 567788888877776666643222 666666665 2332 666676666666666666666666666666
Q ss_pred cCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447 69 DCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
+|.+.+.+|..+..+++|+.+++++|.+. .+|..++.+++|++|++++|.+.+ +|..++.+++|+.|++++|.+.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 66666666666666666666666666655 455556666666666666666554 5555555556666666555554
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.2e-20 Score=118.80 Aligned_cols=147 Identities=24% Similarity=0.323 Sum_probs=126.4
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
+..++.|.||.|. +..+|..+.. +++.+|+++.+|. +.|.++. +.+..+|.+|+.++.|+.||+
T Consensus 32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 3456677778765 4456666554 7888888888777 6677777 456788999999999999999
Q ss_pred ecCcccC-CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 68 IDCQNFK-ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 68 ~~~~~~~-~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
.+|++.. ..|..|..+.+|+.+++++|.+..+|+.+++++.||.+.+.+|.+-.+|.+++.++.|+.+++.+|++..+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 9999865 478888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 047447 147 KILN 150 (150)
Q Consensus 147 ~~~~ 150 (150)
++++
T Consensus 190 pel~ 193 (264)
T KOG0617|consen 190 PELA 193 (264)
T ss_pred hhhh
Confidence 8764
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=5.6e-18 Score=126.04 Aligned_cols=147 Identities=24% Similarity=0.296 Sum_probs=99.6
Q ss_pred CCCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEE
Q 047447 1 MLKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSL 65 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L 65 (150)
++..|+.||||.|+ ++++|..+.. +++++|.|.++|. -.||+++| .+..+|+.+..+.+|+.|
T Consensus 101 ~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhh
Confidence 35677888888876 5566776654 7778888887777 55677773 456666666667777777
Q ss_pred EeecCccc-------------------------CCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCc
Q 047447 66 EIIDCQNF-------------------------KILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLK 120 (150)
Q Consensus 66 ~l~~~~~~-------------------------~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~ 120 (150)
++++|.+. ..+|..+..+.+|..++++.|.+..+|+.+.++.+|+.|++++|.|+
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 77666532 12455566666777777777777777777777777777777777777
Q ss_pred ccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447 121 RLPESLNQLSSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 121 ~lp~~~~~~~~L~~l~l~~n~l~~~p~~~ 149 (150)
.+....+.+.+|++|+++.|++..+|+++
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhccchHHH
Confidence 66555555556666666666666666544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=2.3e-16 Score=117.62 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=96.4
Q ss_pred CCCcEEecccCCCccccccCCcc-------ccCCCcCcccccc--------cce------------------------ec
Q 047447 3 KSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS--------CKL------------------------VL 43 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~--------~~L------------------------~l 43 (150)
+.+-+||||+|+ +..+|...+. +++++|++..+|. ++| .+
T Consensus 126 Kn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 356678888876 4456776655 7788888887776 333 33
Q ss_pred ccccC-CCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCccc
Q 047447 44 EKCLS-LQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRL 122 (150)
Q Consensus 44 ~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~l 122 (150)
++.+. ...+|.++.++.+|..+|++.|++. .+|+.+-.+++|..|++++|.++++....+.+.++..|+++.|+++.+
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence 33221 1245666677777777777765543 356666677777777777777776655555666677777777777777
Q ss_pred CccccCCCCCCEEEccCCCCC--CCCCCCC
Q 047447 123 PESLNQLSSLKRLVLSDNPLK--ILPKILN 150 (150)
Q Consensus 123 p~~~~~~~~L~~l~l~~n~l~--~~p~~~~ 150 (150)
|+++..++.|+.|++.+|++. -+|+.+|
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 777777777777777776654 6666654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.54 E-value=2.7e-16 Score=111.50 Aligned_cols=109 Identities=32% Similarity=0.380 Sum_probs=90.8
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n 117 (150)
+.+|..+ +.++.+|+.++.+.+|..|++.+|++... | .|.++..|..+++..|.+..+|.+. ..++++..+++.+|
T Consensus 186 ~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 186 KHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred Hhcccch-hhhhcCChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence 4555555 46777888888888888888888776654 3 5788888888888888888888765 58999999999999
Q ss_pred cCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447 118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150 (150)
Q Consensus 118 ~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~ 150 (150)
+++..|+++..+++|..+|+++|.|+.+|..+|
T Consensus 263 klke~Pde~clLrsL~rLDlSNN~is~Lp~sLg 295 (565)
T KOG0472|consen 263 KLKEVPDEICLLRSLERLDLSNNDISSLPYSLG 295 (565)
T ss_pred ccccCchHHHHhhhhhhhcccCCccccCCcccc
Confidence 999999999999999999999999999998875
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.54 E-value=3.9e-15 Score=109.99 Aligned_cols=122 Identities=24% Similarity=0.146 Sum_probs=74.9
Q ss_pred ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCC
Q 047447 26 NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLI 96 (150)
Q Consensus 26 l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l 96 (150)
+.++.|+++.+|. +.|++..|.+-..-.-.|.++++|+.|.+.+|.+....-..|..+.+++++++..|.+
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 4445555554444 4455555322111123345555555555555555555545566667777777777777
Q ss_pred Cccch-hhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCCCCCC
Q 047447 97 REVPE-SLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 97 ~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
..+-+ ++.++++|++|+++.|.|.. -++.|..+.+|+.|+++.|+|+.+|+
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 66654 55677777778888777777 45667777778888888888777765
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.52 E-value=9.9e-16 Score=113.04 Aligned_cols=108 Identities=27% Similarity=0.290 Sum_probs=48.4
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
+.|+++.|.+....++.+....+|++|++++|+++...++.|..+..|+.|+++.|.++.+.+ .+..+.+|+.|++.+|
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 444555544444444445555555555555555555444444444444444444444443333 2333444444444444
Q ss_pred cCcc-cCc---cccCCCCCCEEEccCCCCCCCC
Q 047447 118 GLKR-LPE---SLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 118 ~i~~-lp~---~~~~~~~L~~l~l~~n~l~~~p 146 (150)
.+.+ +.+ .+..+++|+.|.+.+|+++++|
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 4333 211 1333444444444444444433
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-15 Score=97.33 Aligned_cols=123 Identities=26% Similarity=0.342 Sum_probs=108.1
Q ss_pred ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447 26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR 97 (150)
Q Consensus 26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 97 (150)
+.++.|.++.+|. +.|.+.+ ++.+.+|..+.+++.|+.|+++.|++. ..|.+|+.++.|+.+|+..|.+.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccc
Confidence 7888999998887 6777877 578899999999999999999986644 46788999999999999999887
Q ss_pred --ccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447 98 --EVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150 (150)
Q Consensus 98 --~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~ 150 (150)
.+|..+..++.|+-+++++|-++-+|..++.+++|+.+.++.|.+-++|.++|
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig 170 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIG 170 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHH
Confidence 67888878888999999999999999999999999999999999999998765
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.47 E-value=5.7e-13 Score=108.09 Aligned_cols=105 Identities=31% Similarity=0.496 Sum_probs=60.3
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCC-CCccchhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTL-IREVPESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~~~L~~l~l~~n 117 (150)
+.|++++|.....+|..++.+++|+.|++++|...+.+|... .+++|+.+++++|. +..+|.. ..+++.|++++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 345566666666677777777778888877776666565443 45556666665542 2233321 234555555555
Q ss_pred cCcccCccccCCCCCCEEEccC-CCCCCCCC
Q 047447 118 GLKRLPESLNQLSSLKRLVLSD-NPLKILPK 147 (150)
Q Consensus 118 ~i~~lp~~~~~~~~L~~l~l~~-n~l~~~p~ 147 (150)
.++.+|.++..+++|+.+++++ +.+..+|.
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 5555665556666666666655 34444443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=2.2e-14 Score=110.19 Aligned_cols=140 Identities=27% Similarity=0.290 Sum_probs=104.4
Q ss_pred CCCCcEEecccCCCccccccCCcc--------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC--------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTS 64 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~--------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~ 64 (150)
+++|+.|+|..|. +.++|+.+.. +..+.|.+..+|. +.|.+.+|.+....-+.+.+..+|+.
T Consensus 309 ~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred cceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 5678888888765 5566775544 4555666666665 66777787666665566778888999
Q ss_pred EEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 65 LEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 65 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
|++++|++.......+.++..|+.|++++|.++.+|..+.++..|+.|...+|++..+| ++..++.|+.+|++.|.++
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 99998777665556678888888889998888888877777777888777777777777 6677777777777777765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.40 E-value=1.2e-14 Score=103.28 Aligned_cols=141 Identities=26% Similarity=0.352 Sum_probs=95.6
Q ss_pred CCcEEecccCCCccccccCCcc---------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEE
Q 047447 4 SLQSIEISNCSILKRFLEIPSC---------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSL 65 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p~~~~~---------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L 65 (150)
..+.|++++-+ .+.+|+..+. .+++.|++..+|. +.+.++. ++...+|..+..++++..|
T Consensus 363 ~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn-n~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 363 TTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN-NKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc-CccccchHHHHhhhcceee
Confidence 34566666643 4456665544 6677777777777 3344444 4555666666666666666
Q ss_pred EeecCcccCCCchhhcCcCcCceEEecCC-----------------------CCCccch-hhcCCCCCCEEEccCCcCcc
Q 047447 66 EIIDCQNFKILPYELGNLKALETLIVDGT-----------------------LIREVPE-SLGQLSSLKILVLTNNGLKR 121 (150)
Q Consensus 66 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-----------------------~l~~l~~-~~~~~~~L~~l~l~~n~i~~ 121 (150)
++++ ++...+|..++.+..|+.++++.| +++.+++ .++++..|..+++.+|.+..
T Consensus 441 ~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~ 519 (565)
T KOG0472|consen 441 DLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ 519 (565)
T ss_pred eccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh
Confidence 6664 344445555566666666666655 4444444 36788889999999999999
Q ss_pred cCccccCCCCCCEEEccCCCCCCCCCC
Q 047447 122 LPESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 122 lp~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
+|..++++++|+++++++|+++ .|+.
T Consensus 520 IPp~LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred CChhhccccceeEEEecCCccC-CCHH
Confidence 9999999999999999999988 5653
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.6e-12 Score=100.73 Aligned_cols=132 Identities=27% Similarity=0.264 Sum_probs=80.4
Q ss_pred CCCcEEecccCCCcccccc---CCccccCCCcCcccccc-----cceecccccCCCcCcccccC----------------
Q 047447 3 KSLQSIEISNCSILKRFLE---IPSCNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCM---------------- 58 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~---~~~~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~---------------- 58 (150)
+.|++|++++|.+.+ +|. .+..+++++|.++.+|. ++|++++|++. .+|.....
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcc
Confidence 457777777765543 333 22235566666665554 56666664432 33321110
Q ss_pred -CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447 59 -FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL 137 (150)
Q Consensus 59 -l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l 137 (150)
..+|+.|++++|.+.+ +|. ..++|+.|++++|.++.+|... ..|+.+++++|+++.+|..+..+++|+.+++
T Consensus 380 l~~~L~~LdLs~N~Lt~-LP~---l~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 380 LPSGLKELIVSGNRLTS-LPV---LPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred cccccceEEecCCcccC-CCC---cccCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence 1245566666655543 332 1245677777777777666432 3567788888888888888888889999999
Q ss_pred cCCCCC
Q 047447 138 SDNPLK 143 (150)
Q Consensus 138 ~~n~l~ 143 (150)
++|+++
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 999887
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=6.7e-13 Score=102.87 Aligned_cols=79 Identities=33% Similarity=0.421 Sum_probs=35.5
Q ss_pred CccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCC
Q 047447 61 SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 61 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n 140 (150)
+|+.|++++|.+.+ +|..+ .++|+.|++++|.+..+|..+. +.|+.|++++|.++.+|..+. .+|+.+++++|
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred cceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC
Confidence 44444454444333 23222 1345555555555554444331 345555555555555444332 13444445555
Q ss_pred CCCCCC
Q 047447 141 PLKILP 146 (150)
Q Consensus 141 ~l~~~p 146 (150)
.+..+|
T Consensus 399 ~L~~LP 404 (754)
T PRK15370 399 NLVRLP 404 (754)
T ss_pred CcccCc
Confidence 544444
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.2e-12 Score=101.50 Aligned_cols=138 Identities=23% Similarity=0.250 Sum_probs=93.2
Q ss_pred CCCcEEecccCCCccccccCC----ccccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447 3 KSLQSIEISNCSILKRFLEIP----SCNIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN 72 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~----~~l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 72 (150)
++|++|++++|.+. .+|..+ ..+++++|.+..+|. +.|++++|++ ..+|..+. .+|+.|++++|++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCcc-CccccccC--CCCcEEECCCCcc
Confidence 47888999888654 455433 337888888887775 6778887544 45665443 4677788877766
Q ss_pred cCCCchhhc-------------------CcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCC
Q 047447 73 FKILPYELG-------------------NLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLK 133 (150)
Q Consensus 73 ~~~~~~~~~-------------------~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~ 133 (150)
.+. |..+. ..++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|..+. ++|+
T Consensus 296 t~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~ 370 (754)
T PRK15370 296 RTL-PAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTIT 370 (754)
T ss_pred ccC-cccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcC
Confidence 542 21110 12456777777777776665543 578888888888887776553 5788
Q ss_pred EEEccCCCCCCCCCCC
Q 047447 134 RLVLSDNPLKILPKIL 149 (150)
Q Consensus 134 ~l~l~~n~l~~~p~~~ 149 (150)
.|++++|.+..+|..+
T Consensus 371 ~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 371 TLDVSRNALTNLPENL 386 (754)
T ss_pred EEECCCCcCCCCCHhH
Confidence 9999999888888643
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=1.3e-11 Score=95.80 Aligned_cols=67 Identities=24% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCCcEEecccCCCccccccCC---ccccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccC
Q 047447 3 KSLQSIEISNCSILKRFLEIP---SCNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK 74 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~---~~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 74 (150)
++|++|++++|++. .+|... ..+++.+|.++.+|. +.|++++|. +..+|. ..++|+.|++++|.+.+
T Consensus 242 ~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 242 PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred CCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCc-cccccc---cccccceeECCCCcccc
Confidence 46677777766543 334322 224445554444433 344444432 223332 12445555555554443
No 17
>PLN03150 hypothetical protein; Provisional
Probab=99.29 E-value=1.9e-11 Score=93.82 Aligned_cols=104 Identities=28% Similarity=0.360 Sum_probs=89.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n 117 (150)
+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|+.++.+++|+.|++++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 46788888888888988999999999999999999999988999999999999999888 77888899999999999999
Q ss_pred cCcc-cCccccCC-CCCCEEEccCCCC
Q 047447 118 GLKR-LPESLNQL-SSLKRLVLSDNPL 142 (150)
Q Consensus 118 ~i~~-lp~~~~~~-~~L~~l~l~~n~l 142 (150)
.+++ +|..++.. .++..+++.+|..
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cccccCChHHhhccccCceEEecCCcc
Confidence 9887 88877653 4667888888753
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=5.2e-11 Score=96.89 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=49.8
Q ss_pred ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCC-CCC
Q 047447 26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGT-LIR 97 (150)
Q Consensus 26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~ 97 (150)
+.+..+.++.+|. ++|++.+++ +..++..+..+++|+.++++++...+.+|. +..+++|+.|++.+| .+.
T Consensus 594 L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 594 LRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV 671 (1153)
T ss_pred EEecCCCCCCCCCcCCccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc
Confidence 5555555555554 455555533 334444455555555555555544444442 444555555555554 233
Q ss_pred ccchhhcCCCCCCEEEccCCc-CcccCc
Q 047447 98 EVPESLGQLSSLKILVLTNNG-LKRLPE 124 (150)
Q Consensus 98 ~l~~~~~~~~~L~~l~l~~n~-i~~lp~ 124 (150)
.+|..++.+++|+.+++++|. ++.+|.
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 555555555555555555543 444443
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=2.1e-11 Score=79.08 Aligned_cols=83 Identities=33% Similarity=0.435 Sum_probs=23.2
Q ss_pred CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCCcCcccC--ccccCCCCCCEE
Q 047447 59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNGLKRLP--ESLNQLSSLKRL 135 (150)
Q Consensus 59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n~i~~lp--~~~~~~~~L~~l 135 (150)
+.+++.|++++|.+.... .+..++.|+.|++++|.++++.+.+ ..+++|++|++++|.|.++. ..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 444555555554444331 2344455555555555555443333 23455555555555554432 123444555555
Q ss_pred EccCCCCC
Q 047447 136 VLSDNPLK 143 (150)
Q Consensus 136 ~l~~n~l~ 143 (150)
++.+|++.
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 55555543
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=5.6e-12 Score=89.56 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=27.6
Q ss_pred CCCCcEEecccCCCccccccCCcc-------ccCCCcCcccccc
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS 38 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~ 38 (150)
+++|+.||||.|++...-|+.+.. ++.++|+|+.+|+
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 578999999999877766665544 5566688887776
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.4e-13 Score=98.80 Aligned_cols=121 Identities=25% Similarity=0.368 Sum_probs=103.7
Q ss_pred ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447 26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE 98 (150)
Q Consensus 26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 98 (150)
++++.|++..+|. +.|-+++ +.++.+|..++.+..|..||.+.|.+... |..++++.+|+.+.+.+|.+..
T Consensus 126 l~ls~NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 126 LDLSSNQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred hhhccchhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhh
Confidence 7788888888777 5566666 67889999999889999999999877664 5567899999999999999999
Q ss_pred cchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447 99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 99 l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~ 149 (150)
+|+.+. .-.|..|++++|++..+|-.|.+|+.|+++-+.+|++++=|..+
T Consensus 204 lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 204 LPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred CCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 999887 45688999999999999999999999999999999998877644
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=4.6e-11 Score=91.71 Aligned_cols=88 Identities=34% Similarity=0.580 Sum_probs=81.9
Q ss_pred ccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccC
Q 047447 62 LTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSD 139 (150)
Q Consensus 62 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~ 139 (150)
++.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+++ +|+.++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678999999999999999999999999999999998 788889999999999999999997 899999999999999999
Q ss_pred CCCC-CCCCCC
Q 047447 140 NPLK-ILPKIL 149 (150)
Q Consensus 140 n~l~-~~p~~~ 149 (150)
|.++ .+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 9998 888754
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=4.7e-11 Score=84.47 Aligned_cols=105 Identities=28% Similarity=0.252 Sum_probs=51.3
Q ss_pred cceecccccCCC----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcC
Q 047447 39 CKLVLEKCLSLQ----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQ 105 (150)
Q Consensus 39 ~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~ 105 (150)
+.|++++|.+.. .++..+..++++++|++++|.+.+. ++..+...++|+.+++++|.++. +...+..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 455566555442 2223344455566666666555432 22223344566666666665541 2223445
Q ss_pred CCCCCEEEccCCcCcc-cCccc-c----CCCCCCEEEccCCCCC
Q 047447 106 LSSLKILVLTNNGLKR-LPESL-N----QLSSLKRLVLSDNPLK 143 (150)
Q Consensus 106 ~~~L~~l~l~~n~i~~-lp~~~-~----~~~~L~~l~l~~n~l~ 143 (150)
+++|+++++++|.+++ -...+ . ..+.|+++++++|.+.
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 5566666666666554 11111 1 1245666666666553
No 24
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.09 E-value=1.6e-10 Score=62.36 Aligned_cols=56 Identities=36% Similarity=0.601 Sum_probs=27.0
Q ss_pred CceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCCC
Q 047447 86 LETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNP 141 (150)
Q Consensus 86 L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n~ 141 (150)
|+++++++|.++.+++ .+..+++|+++++++|.++.++ ..+.++++|+++++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444455444444443 3344455555555555554432 234555555555555554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.3e-10 Score=75.46 Aligned_cols=97 Identities=25% Similarity=0.213 Sum_probs=48.2
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~ 116 (150)
+.|++++|.+. .+. .+..++.|+.|++++|.+....+.....+++|+.|++++|.+..+. ..+..++.|+.+++.+
T Consensus 45 ~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 45 EVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp -EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred CEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 57899996544 443 4678999999999999888754322246899999999999988553 3567899999999999
Q ss_pred CcCcccCc----cccCCCCCCEEEc
Q 047447 117 NGLKRLPE----SLNQLSSLKRLVL 137 (150)
Q Consensus 117 n~i~~lp~----~~~~~~~L~~l~l 137 (150)
|+++..+. .+..+|+|+.||-
T Consensus 123 NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 123 NPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcccchhhHHHHHHHHcChhheeCC
Confidence 99987543 3577889998864
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=3.8e-12 Score=93.98 Aligned_cols=137 Identities=29% Similarity=0.412 Sum_probs=71.1
Q ss_pred ecccCCCccccccCCcc--------ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447 9 EISNCSILKRFLEIPSC--------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN 72 (150)
Q Consensus 9 ~l~~~~~~~~~p~~~~~--------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 72 (150)
.|++ ...+++|-...+ .+++.|++..+|. +.+.+++| -...+|..+..+..|++++++.|.+
T Consensus 56 ~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 56 LLSG-RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred cccc-chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchh
Confidence 3443 344555554444 5566666666666 33334442 2344555555566666666655443
Q ss_pred cCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCC---------------------
Q 047447 73 FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSS--------------------- 131 (150)
Q Consensus 73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~--------------------- 131 (150)
+. .|..+..++ |+.+.+++|+++.+|+.++..+.|.+++.+.|++..+|..++.+.+
T Consensus 134 S~-lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L 211 (722)
T KOG0532|consen 134 SH-LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL 211 (722)
T ss_pred hc-CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC
Confidence 33 233344444 4555555555555555555555555555555555544443333333
Q ss_pred -CCEEEccCCCCCCCCCCC
Q 047447 132 -LKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 132 -L~~l~l~~n~l~~~p~~~ 149 (150)
|..||+++|++..+|.+|
T Consensus 212 pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred ceeeeecccCceeecchhh
Confidence 566677777776666554
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=2.5e-10 Score=61.62 Aligned_cols=60 Identities=32% Similarity=0.476 Sum_probs=54.6
Q ss_pred CCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcC
Q 047447 60 KSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGL 119 (150)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i 119 (150)
++|++|++++|++....+..|..+++|+++++++|.++.+++ .+..+++|+++++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578999999998888777899999999999999999998876 779999999999999875
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.04 E-value=3.2e-12 Score=98.65 Aligned_cols=89 Identities=26% Similarity=0.318 Sum_probs=79.4
Q ss_pred CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447 59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL 137 (150)
Q Consensus 59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l 137 (150)
.+.|+.|++.+|.+....-+.+.++.+|+.|++++|.+..+|. .+.++..|++|++++|.++.+|..+..++.|++|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 5567888899888887766678899999999999999999987 568999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 047447 138 SDNPLKILPK 147 (150)
Q Consensus 138 ~~n~l~~~p~ 147 (150)
.+|++..+|+
T Consensus 438 hsN~l~~fPe 447 (1081)
T KOG0618|consen 438 HSNQLLSFPE 447 (1081)
T ss_pred cCCceeechh
Confidence 9999999985
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.9e-11 Score=85.65 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=94.8
Q ss_pred CCCCcEEecccCCCccccc--------cCCccccCCCcCcccccc----------cceecccccCCC-cCcccccCCCCc
Q 047447 2 LKSLQSIEISNCSILKRFL--------EIPSCNIDGGIGIERLAS----------CKLVLEKCLSLQ-SLPSSLCMFKSL 62 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p--------~~~~~l~l~~~~l~~l~~----------~~L~l~~~~~~~-~~~~~~~~l~~L 62 (150)
|+.++.||||.|-+..-.| +.+..++++.|++...-+ +.|.++.|.+.. .+-.....+|++
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 5667777777664333111 112226777777664333 667777776653 222334567888
Q ss_pred cEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcc--cCcc-----ccCCCCCC
Q 047447 63 TSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKR--LPES-----LNQLSSLK 133 (150)
Q Consensus 63 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~--lp~~-----~~~~~~L~ 133 (150)
..|++..|...........-+..|+.|++++|.+-..+ ...+.++.|..++++.+.+.+ +|+. ...+++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 88888887533332222334567888899888777555 356788888888888888887 4443 34577899
Q ss_pred EEEccCCCCCCCCC
Q 047447 134 RLVLSDNPLKILPK 147 (150)
Q Consensus 134 ~l~l~~n~l~~~p~ 147 (150)
+|++..|++.++++
T Consensus 305 ~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 305 YLNISENNIRDWRS 318 (505)
T ss_pred eeecccCccccccc
Confidence 99999999877664
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.5e-10 Score=80.22 Aligned_cols=118 Identities=22% Similarity=0.197 Sum_probs=67.3
Q ss_pred ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447 26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR 97 (150)
Q Consensus 26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 97 (150)
+++++|.|+.+.. +.|++++|.+.. +. .+..+++|+.||+++|.+.... .+-.++.+++.|.+++|.+.
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhh-hhHhhhcCEeeeehhhhhHh
Confidence 4555555544333 455555543322 21 1455566666666665444332 22334555666666666555
Q ss_pred ccchhhcCCCCCCEEEccCCcCccc--CccccCCCCCCEEEccCCCCCCCCC
Q 047447 98 EVPESLGQLSSLKILVLTNNGLKRL--PESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 98 ~l~~~~~~~~~L~~l~l~~n~i~~l--p~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
.+. .++.+-+|..|++.+|+|+.+ ...+++++.|+++.+.+|++..+|.
T Consensus 366 ~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 366 TLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 432 345566677777777777764 3457788888888888888876653
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=3.5e-10 Score=80.03 Aligned_cols=105 Identities=30% Similarity=0.278 Sum_probs=63.3
Q ss_pred cceecccccCCC----cCcccccCC-CCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhc
Q 047447 39 CKLVLEKCLSLQ----SLPSSLCMF-KSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLG 104 (150)
Q Consensus 39 ~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~ 104 (150)
++|++++|.... .+...+..+ ++|+.|++++|.+.+. ++..+..+++++.+++++|.++. ++..+.
T Consensus 111 ~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~ 190 (319)
T cd00116 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190 (319)
T ss_pred cEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH
Confidence 456666655432 222334445 6677777777766632 23344555677777777776651 233445
Q ss_pred CCCCCCEEEccCCcCcc-----cCccccCCCCCCEEEccCCCCC
Q 047447 105 QLSSLKILVLTNNGLKR-----LPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 105 ~~~~L~~l~l~~n~i~~-----lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
..+.|+++++++|.+++ +...+..+++|+++++++|.+.
T Consensus 191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 55677788887777663 2334556677888888887765
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=9.4e-11 Score=81.23 Aligned_cols=104 Identities=26% Similarity=0.285 Sum_probs=88.7
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 118 (150)
+++|+++| .++.+..+..-+|.++.|++++|.+..... +..+++|+.||+++|.++++-.+-..+.+++.|.++.|.
T Consensus 287 telDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 287 TELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhcccccc-chhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 78999994 667777777788999999999999877643 778999999999999999887777788899999999999
Q ss_pred CcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 119 LKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 119 i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
|..+ .++..+-+|..||+++|+|+.+.
T Consensus 364 iE~L-SGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 364 IETL-SGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred Hhhh-hhhHhhhhheeccccccchhhHH
Confidence 9886 35678889999999999987553
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.87 E-value=7.4e-11 Score=83.98 Aligned_cols=116 Identities=23% Similarity=0.289 Sum_probs=58.1
Q ss_pred ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeec-CcccCCCchhhcCcCcCceEEecCCC
Q 047447 26 NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID-CQNFKILPYELGNLKALETLIVDGTL 95 (150)
Q Consensus 26 l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~ 95 (150)
+.+..|.|+.+|. +.||+++|++...-|+.|.++.++..|-+.+ |+++......|.++..++.|.+.-|.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 5555555555554 4455555544444455555555544433333 33333333445555555555554444
Q ss_pred CCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCC
Q 047447 96 IREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNP 141 (150)
Q Consensus 96 l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~ 141 (150)
+..++. .+..++++..|.+.+|.+..+++ .+..+.+++++++..|+
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 443332 44555555555555555555554 35555555555555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=4.3e-09 Score=76.88 Aligned_cols=116 Identities=28% Similarity=0.393 Sum_probs=69.7
Q ss_pred ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447 26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR 97 (150)
Q Consensus 26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 97 (150)
+++++|.+..+|. +.|++++| ....+|........|+++.+++|..... +..+..+..+..+.+.+|++.
T Consensus 168 L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred cccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceee
Confidence 5555555555544 34555553 3444444333444466666665542222 223445555666666666666
Q ss_pred ccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCC
Q 047447 98 EVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKI 144 (150)
Q Consensus 98 ~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~ 144 (150)
.++..++.+++++.+++++|.++.++. ++...+++.+++++|.+..
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred eccchhccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 556666777777788888888777665 6777778888887777653
No 35
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.75 E-value=9.2e-09 Score=51.59 Aligned_cols=39 Identities=38% Similarity=0.601 Sum_probs=21.5
Q ss_pred CCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 108 ~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
+|++|++++|+|+++|..+.++++|+.+++++|+++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455556666666655555556666666666666655543
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.71 E-value=3.4e-10 Score=86.20 Aligned_cols=117 Identities=23% Similarity=0.146 Sum_probs=81.7
Q ss_pred ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447 26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR 97 (150)
Q Consensus 26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 97 (150)
.+.++|++..+.. +.|++++|++.. +. .+..+++|++||+++|.+....--...++. |+.|.+.+|.++
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT 245 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence 4445565554433 788899965543 32 567888999999999776554221223344 888999998887
Q ss_pred ccchhhcCCCCCCEEEccCCcCcccCc--cccCCCCCCEEEccCCCCCCCC
Q 047447 98 EVPESLGQLSSLKILVLTNNGLKRLPE--SLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 98 ~l~~~~~~~~~L~~l~l~~n~i~~lp~--~~~~~~~L~~l~l~~n~l~~~p 146 (150)
++. .+.++.+|+.|+++.|-+.+..+ .++.+..|+.|++.||++..-|
T Consensus 246 tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 246 TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 664 45688889999999998887432 3566778899999999886544
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=5.4e-09 Score=73.42 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=62.6
Q ss_pred CCCCcEEecccCCCccccccCCcc----------ccCCCcCcccccc----------------------cceecccccCC
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC----------NIDGGIGIERLAS----------------------CKLVLEKCLSL 49 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~----------l~l~~~~l~~l~~----------------------~~L~l~~~~~~ 49 (150)
+|+|++||||+|.+....+..+.. +++.++.+..... +++....| .+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cc
Confidence 578999999999877655544433 6666666553221 33333332 22
Q ss_pred C-----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhcCCCCCCEEEcc
Q 047447 50 Q-----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLGQLSSLKILVLT 115 (150)
Q Consensus 50 ~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l~ 115 (150)
+ .+...+...+.++.+.++.|.+... ....|.++++|+.||+.+|.++ .+...+..+++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 2 1222344455555555555544321 2234555666666666666554 123344555556666666
Q ss_pred CCcCc
Q 047447 116 NNGLK 120 (150)
Q Consensus 116 ~n~i~ 120 (150)
+|.+.
T Consensus 250 dcll~ 254 (382)
T KOG1909|consen 250 DCLLE 254 (382)
T ss_pred ccccc
Confidence 66554
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=3.2e-08 Score=72.32 Aligned_cols=142 Identities=32% Similarity=0.353 Sum_probs=84.6
Q ss_pred CCCcEEecccCCCcccccc-------CCccccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 3 KSLQSIEISNCSILKRFLE-------IPSCNIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~-------~~~~l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
+.++.|++.++.+.. +|. .+..+++++|.+..+|. +.|++++| .+..+|...+.++.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCccccc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence 345666666655443 222 12225666666665532 55666664 33444444345666666666
Q ss_pred ecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 68 IDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
++|.+... |........|+.+.+++|.....+..+..+..+..+.+.+|++..++..++.+++++.+++++|.++.++.
T Consensus 194 s~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 194 SGNKISDL-PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred cCCccccC-chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 66554443 22223344466666666654455555556666666666777766666777888889999999999887765
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.9e-08 Score=72.65 Aligned_cols=143 Identities=21% Similarity=0.278 Sum_probs=99.4
Q ss_pred CCCCCcEEecccCCCcccccc-------CCccccCCCcCcc---------cccc-cceecccccCCCcCcccccCCCCcc
Q 047447 1 MLKSLQSIEISNCSILKRFLE-------IPSCNIDGGIGIE---------RLAS-CKLVLEKCLSLQSLPSSLCMFKSLT 63 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p~-------~~~~l~l~~~~l~---------~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~ 63 (150)
.+|+|+.|+|+.|.+..-... ....+.++++.++ .+|. +.|++++|...........-+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 378999999999876532111 1111666666665 3444 7788998754443333445577899
Q ss_pred EEEeecCcccCCC-chhhcCcCcCceEEecCCCCCcc--chh-----hcCCCCCCEEEccCCcCcccCc--cccCCCCCC
Q 047447 64 SLEIIDCQNFKIL-PYELGNLKALETLIVDGTLIREV--PES-----LGQLSSLKILVLTNNGLKRLPE--SLNQLSSLK 133 (150)
Q Consensus 64 ~L~l~~~~~~~~~-~~~~~~l~~L~~l~l~~n~l~~l--~~~-----~~~~~~L~~l~l~~n~i~~lp~--~~~~~~~L~ 133 (150)
.|++++|++.... ....+.++.|..++++.+++.++ |+. .-..++|++|++..|+|.+++. .+..+++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 9999999877653 23467888999999999998854 332 2468899999999999987653 355567778
Q ss_pred EEEccCCCCC
Q 047447 134 RLVLSDNPLK 143 (150)
Q Consensus 134 ~l~l~~n~l~ 143 (150)
++.+..|.+.
T Consensus 330 ~l~~~~n~ln 339 (505)
T KOG3207|consen 330 HLRITLNYLN 339 (505)
T ss_pred hhhccccccc
Confidence 7777777664
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.59 E-value=3e-09 Score=65.82 Aligned_cols=88 Identities=25% Similarity=0.267 Sum_probs=54.1
Q ss_pred CCCCccEEEeecCcccCCCchhh-cCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEE
Q 047447 58 MFKSLTSLEIIDCQNFKILPYEL-GNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLV 136 (150)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~ 136 (150)
...+|+..++++|.+.. +|+.| ...+..+.+++.+|.+.++|..+..+++|+.++++.|.+...|..+..+.++..|+
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 34455566666654433 33333 34456666777777777777666667777777777777766666655566666666
Q ss_pred ccCCCCCCCC
Q 047447 137 LSDNPLKILP 146 (150)
Q Consensus 137 l~~n~l~~~p 146 (150)
..+|.+..+|
T Consensus 130 s~~na~~eid 139 (177)
T KOG4579|consen 130 SPENARAEID 139 (177)
T ss_pred CCCCccccCc
Confidence 6666665554
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.57 E-value=1.6e-07 Score=47.11 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=26.2
Q ss_pred cCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccC
Q 047447 85 ALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLP 123 (150)
Q Consensus 85 ~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp 123 (150)
+|+.|++++|.++.+|+.+.+++.|+.+++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 567777777777777666677777777777777776643
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=7.7e-07 Score=64.90 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=25.7
Q ss_pred CCCCcEEecccCCCccccccC---CccccCCC-cCcccccc------cceecccccCCCcCc
Q 047447 2 LKSLQSIEISNCSILKRFLEI---PSCNIDGG-IGIERLAS------CKLVLEKCLSLQSLP 53 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~---~~~l~l~~-~~l~~l~~------~~L~l~~~~~~~~~~ 53 (150)
++.++.|++++|. +..+|.. +..+.+++ +.++.+|. +.|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~-L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCC-CcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc
Confidence 4678888888874 4444532 22244433 33343332 555555554344343
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.46 E-value=1.1e-08 Score=63.30 Aligned_cols=88 Identities=26% Similarity=0.435 Sum_probs=70.5
Q ss_pred CccEEEeecCcccCC--CchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCCcCcccCccccCCCCCCEEEc
Q 047447 61 SLTSLEIIDCQNFKI--LPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVL 137 (150)
Q Consensus 61 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l 137 (150)
.+..++++.|.+-.. .+..+..-..|..+++++|.+..+|+.+ ...+.++.+++++|.|.++|.++..++.|+.+++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 455677777765432 2233445556888999999999999877 5667899999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q 047447 138 SDNPLKILPKI 148 (150)
Q Consensus 138 ~~n~l~~~p~~ 148 (150)
+.|++...|+-
T Consensus 108 ~~N~l~~~p~v 118 (177)
T KOG4579|consen 108 RFNPLNAEPRV 118 (177)
T ss_pred ccCccccchHH
Confidence 99999887753
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=1.8e-08 Score=70.89 Aligned_cols=141 Identities=21% Similarity=0.236 Sum_probs=101.0
Q ss_pred CCCCcEEecccCCCcccc-------------------ccCCccccCCCcCcccccc-------------cceecccccCC
Q 047447 2 LKSLQSIEISNCSILKRF-------------------LEIPSCNIDGGIGIERLAS-------------CKLVLEKCLSL 49 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~-------------------p~~~~~l~l~~~~l~~l~~-------------~~L~l~~~~~~ 49 (150)
+..|+.|+|.+|.+...- |..+.-++.+.|++..-+. +.+.++.|.+.
T Consensus 119 ~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 119 CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc
Confidence 567889999998765321 1111227778888876554 44555554432
Q ss_pred C----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCC-----ccchhh-cCCCCCCEEEcc
Q 047447 50 Q----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESL-GQLSSLKILVLT 115 (150)
Q Consensus 50 ~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~-~~~~~L~~l~l~ 115 (150)
. .+...+..+++|+.||+.+|.++.. +...+..+++|+.+++++|.+. .+...+ ...++|+.+.+.
T Consensus 199 ~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 199 PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 2 2335578899999999999987654 4456778899999999999876 233444 457899999999
Q ss_pred CCcCcc-----cCccccCCCCCCEEEccCCCC
Q 047447 116 NNGLKR-----LPESLNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 116 ~n~i~~-----lp~~~~~~~~L~~l~l~~n~l 142 (150)
+|.|+. +...+...+.|..|++++|++
T Consensus 279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 279 GNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999885 233456678999999999998
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.37 E-value=2.5e-07 Score=73.58 Aligned_cols=102 Identities=27% Similarity=0.363 Sum_probs=74.9
Q ss_pred cceecccccC-CCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLS-LQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~ 116 (150)
++|-+.++.. ...++ ..|..++.|+.||+++|.-.+.+|..++.+-+|+.|++++..+..+|..++++..|.+|++..
T Consensus 548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 4556666431 33333 336678888888888888888888888888888888888888888888888888888888877
Q ss_pred CcCcc-cCccccCCCCCCEEEccCC
Q 047447 117 NGLKR-LPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 117 n~i~~-lp~~~~~~~~L~~l~l~~n 140 (150)
+.... +|.....+.+|++|.+...
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccchhhhcccccEEEeecc
Confidence 66433 4455556788888877654
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.25 E-value=3.7e-06 Score=55.42 Aligned_cols=99 Identities=24% Similarity=0.231 Sum_probs=75.4
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~ 116 (150)
..+|+++|.+.. ++ .|..++.|..|.+++|++....|.--..++.++.|.+.+|.+.++-+ .+..++.|++|.+-+
T Consensus 45 d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 567888865433 22 35678899999999999888877655567889999999998875533 456788999999999
Q ss_pred CcCcccCc----cccCCCCCCEEEccC
Q 047447 117 NGLKRLPE----SLNQLSSLKRLVLSD 139 (150)
Q Consensus 117 n~i~~lp~----~~~~~~~L~~l~l~~ 139 (150)
|+++..+. .+..+++|+.||..+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhh
Confidence 99887432 367788999998764
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=1.2e-06 Score=60.35 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=78.2
Q ss_pred CCCCCcEEecccCCCccccccCCcc----------ccCCCcCcccccc----------------------cceecccccC
Q 047447 1 MLKSLQSIEISNCSILKRFLEIPSC----------NIDGGIGIERLAS----------------------CKLVLEKCLS 48 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p~~~~~----------l~l~~~~l~~l~~----------------------~~L~l~~~~~ 48 (150)
+||+|+.++||+|.+...+|..+.. +.+++|.+..+.. ++..+..|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR- 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR- 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-
Confidence 6899999999999999888887765 6677777775544 333333322
Q ss_pred CCcCc-----ccccCCCCccEEEeecCcccCC-----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEE
Q 047447 49 LQSLP-----SSLCMFKSLTSLEIIDCQNFKI-----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILV 113 (150)
Q Consensus 49 ~~~~~-----~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~ 113 (150)
...-+ ..+.+...++.+.+.+|.+... .-..+.++.+|+.|++.+|.++. +..++..++.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 22211 2234445677777777765432 22344567788888888887662 233556677788888
Q ss_pred ccCCcCcc
Q 047447 114 LTNNGLKR 121 (150)
Q Consensus 114 l~~n~i~~ 121 (150)
+.+|.++.
T Consensus 249 lnDClls~ 256 (388)
T COG5238 249 LNDCLLSN 256 (388)
T ss_pred ccchhhcc
Confidence 88887664
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.99 E-value=5.9e-06 Score=66.03 Aligned_cols=85 Identities=26% Similarity=0.339 Sum_probs=71.8
Q ss_pred CCCCccEEEeecCc--ccCCCchhhcCcCcCceEEecCC-CCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCE
Q 047447 58 MFKSLTSLEIIDCQ--NFKILPYELGNLKALETLIVDGT-LIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKR 134 (150)
Q Consensus 58 ~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~ 134 (150)
..+.++.|-+.+|. +.....+.|..++.|..||+++| .+..+|..++.+-+||+|++++..+..+|..++.+..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 34578888888876 33333455888999999999988 5679999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 047447 135 LVLSDNPL 142 (150)
Q Consensus 135 l~l~~n~l 142 (150)
|++..+.-
T Consensus 623 Lnl~~~~~ 630 (889)
T KOG4658|consen 623 LNLEVTGR 630 (889)
T ss_pred eccccccc
Confidence 99987653
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=7.8e-05 Score=54.69 Aligned_cols=105 Identities=31% Similarity=0.465 Sum_probs=62.5
Q ss_pred ccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCC---CC
Q 047447 26 NIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTL---IR 97 (150)
Q Consensus 26 l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~---l~ 97 (150)
++++++.++.+|. +.|.+++|..++.+|..+ ..+|++|++++|.....+|. +|+.|++..+. +.
T Consensus 57 L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~ 128 (426)
T PRK15386 57 LYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIK 128 (426)
T ss_pred EEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccc
Confidence 6777777776665 778888877777777544 35788888888754444443 35555555543 33
Q ss_pred ccchhhcCC------------------CCCCEEEccCCcCcccCccccCCCCCCEEEccCC
Q 047447 98 EVPESLGQL------------------SSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 98 ~l~~~~~~~------------------~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n 140 (150)
.+|+.+..+ ++|++|++++|....+|.. -..+|+.|+++.+
T Consensus 129 ~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 129 NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK--LPESLQSITLHIE 187 (426)
T ss_pred cCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccc--ccccCcEEEeccc
Confidence 455443222 2566666666664444421 2246777777655
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=5.9e-07 Score=69.18 Aligned_cols=101 Identities=30% Similarity=0.304 Sum_probs=78.5
Q ss_pred ceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCc
Q 047447 40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNG 118 (150)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~ 118 (150)
+.+.+. +.+..+...+.-++.++.|++++|++..+. .+..+++|++||++.|.++.+|. ....+. |+.|.+.+|.
T Consensus 168 ~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 168 TASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 345555 344555666777889999999999988875 57789999999999999988776 333444 8999999999
Q ss_pred CcccCccccCCCCCCEEEccCCCCCCC
Q 047447 119 LKRLPESLNQLSSLKRLVLSDNPLKIL 145 (150)
Q Consensus 119 i~~lp~~~~~~~~L~~l~l~~n~l~~~ 145 (150)
++.+. .+.++.+|+.||++.|-|...
T Consensus 244 l~tL~-gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 244 LTTLR-GIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred HHhhh-hHHhhhhhhccchhHhhhhcc
Confidence 88863 467888999999999987643
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=1.2e-05 Score=59.37 Aligned_cols=85 Identities=31% Similarity=0.426 Sum_probs=39.0
Q ss_pred ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCE
Q 047447 56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKR 134 (150)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~ 134 (150)
+..+++|++|++++|.+...-+ +..++.|+.|++.+|.+..+. .+..+..|+.+++++|.+..+... ...+.+++.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence 3445555555555555444322 234444555555555554332 122244555555555555544331 234444444
Q ss_pred EEccCCCCC
Q 047447 135 LVLSDNPLK 143 (150)
Q Consensus 135 l~l~~n~l~ 143 (150)
+++.+|.+.
T Consensus 191 l~l~~n~i~ 199 (414)
T KOG0531|consen 191 LDLGGNSIR 199 (414)
T ss_pred HhccCCchh
Confidence 455554443
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=0.0001 Score=48.81 Aligned_cols=83 Identities=29% Similarity=0.447 Sum_probs=66.8
Q ss_pred CCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccCCcCcccCc--cccCCCCCCEEE
Q 047447 60 KSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTNNGLKRLPE--SLNQLSSLKRLV 136 (150)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~n~i~~lp~--~~~~~~~L~~l~ 136 (150)
.+...+|+++|.+... +.|..++.|.+|.+.+|.++.+.+.+ ..++.++.|.+.+|.|..+.+ .+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566789998876554 24668899999999999999887766 466779999999999988643 467889999999
Q ss_pred ccCCCCCC
Q 047447 137 LSDNPLKI 144 (150)
Q Consensus 137 l~~n~l~~ 144 (150)
+-+|+++.
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 99998764
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=1.8e-06 Score=60.27 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=54.2
Q ss_pred cceecccccCCCcCc--ccccCCCCccEEEeecCcccCCCchh-----------------------------hcCcCcCc
Q 047447 39 CKLVLEKCLSLQSLP--SSLCMFKSLTSLEIIDCQNFKILPYE-----------------------------LGNLKALE 87 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------------~~~l~~L~ 87 (150)
+.+++++|+..++.. --+.+++.|..|+++||......-.. ...++.+.
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 677888877655332 33567788888888888654321111 12345555
Q ss_pred eEEecCC-CCC-ccchhhcCCCCCCEEEccCCc-Ccc-cCccccCCCCCCEEEccCC
Q 047447 88 TLIVDGT-LIR-EVPESLGQLSSLKILVLTNNG-LKR-LPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 88 ~l~l~~n-~l~-~l~~~~~~~~~L~~l~l~~n~-i~~-lp~~~~~~~~L~~l~l~~n 140 (150)
.||+++| .++ .+..++-+++.|+++.++.|. |.. ---.+...++|.+|++.+.
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5555554 223 223344455555666555554 211 1113455666777766553
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=6.1e-05 Score=58.97 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=32.2
Q ss_pred cceecccccC-CCcCccccc-CCCCccEEEeecCcccC-CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEcc
Q 047447 39 CKLVLEKCLS-LQSLPSSLC-MFKSLTSLEIIDCQNFK-ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLT 115 (150)
Q Consensus 39 ~~L~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~ 115 (150)
++|+++|... ...++..++ -+|+|+.|.+.+-.+.. .+...+..+++|..||+++..++.+ .++..+++|+.|.+.
T Consensus 125 ~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 125 QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence 4455555321 223333333 24555555554422211 1222333455555555555554433 233344444444433
Q ss_pred C
Q 047447 116 N 116 (150)
Q Consensus 116 ~ 116 (150)
+
T Consensus 204 n 204 (699)
T KOG3665|consen 204 N 204 (699)
T ss_pred C
Confidence 3
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=5.2e-05 Score=56.05 Aligned_cols=90 Identities=32% Similarity=0.320 Sum_probs=66.4
Q ss_pred cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCE
Q 047447 55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKR 134 (150)
Q Consensus 55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~ 134 (150)
.+..+.+++.+++.+|.+.+... .+..+++|+++++++|.++.+. .+..++.|+.|++.+|.|..+.. +..++.|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 35677888888888887766533 1457888999999999888664 23455568888999999888643 455788888
Q ss_pred EEccCCCCCCCCC
Q 047447 135 LVLSDNPLKILPK 147 (150)
Q Consensus 135 l~l~~n~l~~~p~ 147 (150)
+++++|++..+..
T Consensus 167 l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 167 LDLSYNRIVDIEN 179 (414)
T ss_pred ccCCcchhhhhhh
Confidence 8899888876543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=0.00012 Score=57.38 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=67.4
Q ss_pred cceecccccCCC-cCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEcc
Q 047447 39 CKLVLEKCLSLQ-SLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLKILVLT 115 (150)
Q Consensus 39 ~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~ 115 (150)
+.|.+.+..... ....-..++++|..||+++.++... .++..+.+|+.|.+.+=.+... -..+.+++.|+.||++
T Consensus 151 ~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 151 RSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred ceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecc
Confidence 567777743322 2233445788888889988777665 4567888888887766555532 2355678888888888
Q ss_pred CCcCcccC-------ccccCCCCCCEEEccCCCCC
Q 047447 116 NNGLKRLP-------ESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 116 ~n~i~~lp-------~~~~~~~~L~~l~l~~n~l~ 143 (150)
......-+ +.-..++.|+.||.+++.+.
T Consensus 229 ~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 229 RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 76643322 12234788888888887653
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00028 Score=49.64 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=31.6
Q ss_pred CcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccC--ccccCCCCCCEEEccCCCCC
Q 047447 84 KALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLP--ESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 84 ~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp--~~~~~~~~L~~l~l~~n~l~ 143 (150)
+++..+.+.+|.+.... +.....+.+..|.++.++|.++. +++.++++|+.+.+.++++.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 44444555555554322 13344555555666666665532 34566666666666666554
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.02 E-value=0.00017 Score=30.29 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=11.1
Q ss_pred CCEEEccCCCCCCCCCCC
Q 047447 132 LKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 132 L~~l~l~~n~l~~~p~~~ 149 (150)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 566666666666666554
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00074 Score=46.30 Aligned_cols=96 Identities=24% Similarity=0.178 Sum_probs=60.6
Q ss_pred ceecccccCCCcCcccccCCCCccEEEeecC--cccCCCchhhcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEcc
Q 047447 40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC--QNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLKILVLT 115 (150)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~ 115 (150)
.+++.++.+++. ..+-.+++|++|.++.| .+.+.++-....+++|+++++++|+++.+ .+.+..+.+|..|++.
T Consensus 47 ~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 47 LLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred hhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 445555433222 23456788889999888 55555554455668899999999988743 1234566667777887
Q ss_pred CCcCcccC----ccccCCCCCCEEEc
Q 047447 116 NNGLKRLP----ESLNQLSSLKRLVL 137 (150)
Q Consensus 116 ~n~i~~lp----~~~~~~~~L~~l~l 137 (150)
.|..+.+- ..+.-+++|++++-
T Consensus 125 n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 125 NCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cCCccccccHHHHHHHHhhhhccccc
Confidence 77765532 22455677777654
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00048 Score=47.17 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=51.9
Q ss_pred cCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCC--CCC-ccchhhcCCCCCCEEEccCCcCcccC--ccccCCCC
Q 047447 57 CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGT--LIR-EVPESLGQLSSLKILVLTNNGLKRLP--ESLNQLSS 131 (150)
Q Consensus 57 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n--~l~-~l~~~~~~~~~L~~l~l~~n~i~~lp--~~~~~~~~ 131 (150)
.....++.+.+.++.++... .|..+++|++|.++.| .+. .++.....+++|++++++.|.|+.+. .....+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34455555555555444432 3457778888888888 333 44444455688888888888877632 22455566
Q ss_pred CCEEEccCCCCC
Q 047447 132 LKRLVLSDNPLK 143 (150)
Q Consensus 132 L~~l~l~~n~l~ 143 (150)
|..|++..|...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 777777766543
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.0003 Score=49.49 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC--ccchhhcCCCCCCEEEccCCc
Q 047447 58 MFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR--EVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~l~~n~ 118 (150)
.+|.++.|+++.|.+...+...-....+|+.+.+.+..+. .....+..++.++.+.++.|.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 4445555555544443332111012334444444444333 112223344444444444443
No 62
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.75 E-value=0.00097 Score=26.10 Aligned_cols=16 Identities=50% Similarity=0.702 Sum_probs=7.0
Q ss_pred CCCEEEccCCCCCCCC
Q 047447 131 SLKRLVLSDNPLKILP 146 (150)
Q Consensus 131 ~L~~l~l~~n~l~~~p 146 (150)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666655554
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.71 E-value=0.0006 Score=28.59 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=7.9
Q ss_pred CCEEEccCCcCcccCcc
Q 047447 109 LKILVLTNNGLKRLPES 125 (150)
Q Consensus 109 L~~l~l~~n~i~~lp~~ 125 (150)
|+++++++|+++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.52 E-value=0.0042 Score=43.44 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=44.7
Q ss_pred ccCCCCccEEEeecCcccCCCchhh----cCcCcCceEEecCCCCCccch-h-------------hcCCCCCCEEEccCC
Q 047447 56 LCMFKSLTSLEIIDCQNFKILPYEL----GNLKALETLIVDGTLIREVPE-S-------------LGQLSSLKILVLTNN 117 (150)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~l~l~~n~l~~l~~-~-------------~~~~~~L~~l~l~~n 117 (150)
+..+++++.+++++|.+....|+.+ .+...+.+|.+++|++..+.. - ...-+.|+...+..|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4456666666666666655554432 334556666666666553321 0 123445555555555
Q ss_pred cCcccCccccC--C---CCCCEEEccCCCCC
Q 047447 118 GLKRLPESLNQ--L---SSLKRLVLSDNPLK 143 (150)
Q Consensus 118 ~i~~lp~~~~~--~---~~L~~l~l~~n~l~ 143 (150)
.+...+..... + ..|+.+.+..|.|.
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 55554433221 1 24555555555543
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00059 Score=48.09 Aligned_cols=79 Identities=20% Similarity=0.105 Sum_probs=54.2
Q ss_pred cceecccccCCCc---CcccccCCCCccEEEeecCcccCC-CchhhcCcCcCceEEecCCC-CC-ccchhhcCCCCCCEE
Q 047447 39 CKLVLEKCLSLQS---LPSSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTL-IR-EVPESLGQLSSLKIL 112 (150)
Q Consensus 39 ~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~-l~-~l~~~~~~~~~L~~l 112 (150)
..|+++|+...-. +..-...++++.+||+++|..... ....|.+++.|+++.+++|. +. +.--.+...++|.+|
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 5678888753321 122235789999999999876544 34567789999999999984 32 111245788899999
Q ss_pred EccCC
Q 047447 113 VLTNN 117 (150)
Q Consensus 113 ~l~~n 117 (150)
++-++
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 87554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=9.6e-05 Score=51.42 Aligned_cols=78 Identities=26% Similarity=0.241 Sum_probs=52.4
Q ss_pred cCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcc-cCc-----cccC
Q 047447 57 CMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKR-LPE-----SLNQ 128 (150)
Q Consensus 57 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~-lp~-----~~~~ 128 (150)
..++.|+.|.++-|+++..-| +..+..|+.+++..|.+.++.+ -+.++++|+.|.+..|+-.+ -+. .+..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 457778888888877777654 5677788888888887776655 34678888888887777444 221 1334
Q ss_pred CCCCCEEE
Q 047447 129 LSSLKRLV 136 (150)
Q Consensus 129 ~~~L~~l~ 136 (150)
+++|++||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 56666654
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.29 E-value=0.0033 Score=27.35 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=13.7
Q ss_pred CCCCEEEccCCCCCCCCCC
Q 047447 130 SSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 130 ~~L~~l~l~~n~l~~~p~~ 148 (150)
++|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677777777777777764
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.29 E-value=0.0033 Score=27.35 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=13.7
Q ss_pred CCCCEEEccCCCCCCCCCC
Q 047447 130 SSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 130 ~~L~~l~l~~n~l~~~p~~ 148 (150)
++|+.|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677777777777777764
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.17 E-value=0.018 Score=35.18 Aligned_cols=82 Identities=17% Similarity=0.298 Sum_probs=45.9
Q ss_pred ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCC
Q 047447 54 SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSS 131 (150)
Q Consensus 54 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~ 131 (150)
..|..+.+++.+.+.. .+.......|..+.+++.+.+.+ .+..++. .+..++.++.+.+..+ +..++. .+.++ .
T Consensus 29 ~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPN-NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESS-TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhcccccccccccccc-cccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 4466777888888876 34444445677777788888865 4444444 5567888888888664 555433 35665 7
Q ss_pred CCEEEccC
Q 047447 132 LKRLVLSD 139 (150)
Q Consensus 132 L~~l~l~~ 139 (150)
++.+.+..
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 88777664
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0014 Score=45.85 Aligned_cols=81 Identities=28% Similarity=0.364 Sum_probs=44.5
Q ss_pred CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc--ccCCCCCCEEE
Q 047447 59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES--LNQLSSLKRLV 136 (150)
Q Consensus 59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~--~~~~~~L~~l~ 136 (150)
+.+.++|++.+|.+... .....++.|+.|.++-|.++.+. .+..|+.|+++++..|.|.++-+- +.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 44455555555554433 12345666666666666665543 234566666666666666654332 45566666666
Q ss_pred ccCCCC
Q 047447 137 LSDNPL 142 (150)
Q Consensus 137 l~~n~l 142 (150)
+..|+.
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 666554
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.40 E-value=0.074 Score=32.39 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=40.1
Q ss_pred ceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 40 KLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 40 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
.+.+.+ + ...++ ..|.++.+++.+.+.. .........|..++.++.+.+..+ +..++. .+.++ .++.+.+..
T Consensus 39 ~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~- 112 (129)
T PF13306_consen 39 SINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS- 112 (129)
T ss_dssp EEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-
T ss_pred cccccc-c-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-
Confidence 555555 2 33333 4466676788888864 433333456667888888888664 555554 45565 777777654
Q ss_pred cCcccCc-cccCCCCC
Q 047447 118 GLKRLPE-SLNQLSSL 132 (150)
Q Consensus 118 ~i~~lp~-~~~~~~~L 132 (150)
.+..++. .+.++++|
T Consensus 113 ~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 113 NITKIEENAFKNCTKL 128 (129)
T ss_dssp B-SS----GGG-----
T ss_pred CccEECCccccccccC
Confidence 4444433 35555554
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.36 E-value=0.00074 Score=45.99 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=61.1
Q ss_pred cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCE
Q 047447 55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKR 134 (150)
Q Consensus 55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~ 134 (150)
.+......+.||++.|+.... ...|..+..+..++++.|.+..+|+.++....+..++...|+.+..|..++..+.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 345566677777777654433 2335556667777888888877777777777777777777777778888888888887
Q ss_pred EEccCCCC
Q 047447 135 LVLSDNPL 142 (150)
Q Consensus 135 l~l~~n~l 142 (150)
++.-+|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 77777664
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.0082 Score=39.98 Aligned_cols=75 Identities=23% Similarity=0.211 Sum_probs=31.6
Q ss_pred cEEEeecCcccCCCchhhcCcCcCceEEecCCC-CC-ccchhh-cCCCCCCEEEccCCc-Ccc-cCccccCCCCCCEEEc
Q 047447 63 TSLEIIDCQNFKILPYELGNLKALETLIVDGTL-IR-EVPESL-GQLSSLKILVLTNNG-LKR-LPESLNQLSSLKRLVL 137 (150)
Q Consensus 63 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~-~l~~~~-~~~~~L~~l~l~~n~-i~~-lp~~~~~~~~L~~l~l 137 (150)
+.++.++..+...--+.+..++.++.+.+.+|. +. ...+-+ +-.++|+.|+++.|. |++ --..+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 344444444433322334444555555555442 22 111111 234455555555554 554 1223444444444443
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=93.89 E-value=0.046 Score=23.82 Aligned_cols=17 Identities=53% Similarity=0.716 Sum_probs=12.9
Q ss_pred CCCEEEccCCCCCCCCC
Q 047447 131 SLKRLVLSDNPLKILPK 147 (150)
Q Consensus 131 ~L~~l~l~~n~l~~~p~ 147 (150)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777788888877776
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.66 E-value=0.038 Score=41.28 Aligned_cols=102 Identities=24% Similarity=0.340 Sum_probs=48.7
Q ss_pred cceecccccCCCc--CcccccCCCCccEEEeecC-cccCCCc----hhhcCcCcCceEEecCCC-CCcc-chhh-cCCCC
Q 047447 39 CKLVLEKCLSLQS--LPSSLCMFKSLTSLEIIDC-QNFKILP----YELGNLKALETLIVDGTL-IREV-PESL-GQLSS 108 (150)
Q Consensus 39 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~l~l~~n~-l~~l-~~~~-~~~~~ 108 (150)
+.+.+.++..... +-......++|+.|+++++ ......+ .....+..++.++++++. +++. -..+ ..++.
T Consensus 191 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~ 270 (482)
T KOG1947|consen 191 KRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPN 270 (482)
T ss_pred hHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCC
Confidence 3445555544333 2233345666666666652 2211111 122334556666666665 4422 1222 33666
Q ss_pred CCEEEccCCc-Ccc--cCccccCCCCCCEEEccCC
Q 047447 109 LKILVLTNNG-LKR--LPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 109 L~~l~l~~n~-i~~--lp~~~~~~~~L~~l~l~~n 140 (150)
|+.+.+..|. +++ +......++.|++++++.+
T Consensus 271 L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 271 LETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 6666655555 444 3333445566666666644
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.82 E-value=0.042 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=11.1
Q ss_pred CCCCcEEecccCCCccc
Q 047447 2 LKSLQSIEISNCSILKR 18 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~ 18 (150)
+++|++|+|++|.+.+.
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 57899999999986543
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.47 E-value=0.11 Score=22.48 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=13.8
Q ss_pred CCCCcEEecccCCCccc
Q 047447 2 LKSLQSIEISNCSILKR 18 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~ 18 (150)
++.|++|+|++|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 68899999999976553
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.40 E-value=0.033 Score=41.65 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=48.9
Q ss_pred cCCCCccEEEeecCc-ccCCCchhhc-CcCcCceEEecCCC-CC--ccchhhcCCCCCCEEEccCCc-Ccc--cCccccC
Q 047447 57 CMFKSLTSLEIIDCQ-NFKILPYELG-NLKALETLIVDGTL-IR--EVPESLGQLSSLKILVLTNNG-LKR--LPESLNQ 128 (150)
Q Consensus 57 ~~l~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~l~l~~n~-l~--~l~~~~~~~~~L~~l~l~~n~-i~~--lp~~~~~ 128 (150)
..+.+++.++++++. ++...-..+. .++.|+.+.+.+|. ++ .+......++.|++++++.|. +++ +......
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 346778888888877 3333222222 36788888877775 55 333445678888888888777 333 3333344
Q ss_pred CCCCCEEEc
Q 047447 129 LSSLKRLVL 137 (150)
Q Consensus 129 ~~~L~~l~l 137 (150)
+++++.+.+
T Consensus 320 c~~l~~l~~ 328 (482)
T KOG1947|consen 320 CPNLRELKL 328 (482)
T ss_pred Ccchhhhhh
Confidence 555555443
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.23 E-value=0.16 Score=37.77 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=53.0
Q ss_pred cceecccccCCCc--CcccccCCCCccEEEeecCcccCCC-----chhhcCcCcCceEEecCCCCC--ccchhhcCCCCC
Q 047447 39 CKLVLEKCLSLQS--LPSSLCMFKSLTSLEIIDCQNFKIL-----PYELGNLKALETLIVDGTLIR--EVPESLGQLSSL 109 (150)
Q Consensus 39 ~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~l~l~~n~l~--~l~~~~~~~~~L 109 (150)
+.+++.+|..... +-.--.+.+.++++.+++|...... ...-..+..+..+.++++... ...+.+..++.|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 4566666543322 2222235677777777777554332 122234566777777777554 233455677777
Q ss_pred CEEEccCCc-Ccc--cCccccCCCCCCEEE
Q 047447 110 KILVLTNNG-LKR--LPESLNQLSSLKRLV 136 (150)
Q Consensus 110 ~~l~l~~n~-i~~--lp~~~~~~~~L~~l~ 136 (150)
+..++.+++ ++. +...-.+++++++..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 777776665 443 322334455555443
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.42 E-value=0.26 Score=21.43 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=11.0
Q ss_pred CCCCEEEccCCCCCCC
Q 047447 130 SSLKRLVLSDNPLKIL 145 (150)
Q Consensus 130 ~~L~~l~l~~n~l~~~ 145 (150)
++|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4577777777777644
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=0.044 Score=36.62 Aligned_cols=80 Identities=21% Similarity=0.195 Sum_probs=53.6
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCc-hhhc-CcCcCceEEecCC-CCCcc-chhhcCCCCCCEEEc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILP-YELG-NLKALETLIVDGT-LIREV-PESLGQLSSLKILVL 114 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~-~l~~L~~l~l~~n-~l~~l-~~~~~~~~~L~~l~l 114 (150)
+.++.+++.+...--+.+..+++++.|.+.+|.-.+.-- +.++ -.++|+.|++++| .|++- ...+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 667777766555444556778888888888876544311 1222 4578999999988 57643 446778888888877
Q ss_pred cCCc
Q 047447 115 TNNG 118 (150)
Q Consensus 115 ~~n~ 118 (150)
.+-.
T Consensus 184 ~~l~ 187 (221)
T KOG3864|consen 184 YDLP 187 (221)
T ss_pred cCch
Confidence 6543
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.45 E-value=0.42 Score=35.60 Aligned_cols=103 Identities=21% Similarity=0.218 Sum_probs=59.9
Q ss_pred cceecccccCCCcCc-ccc-cCCCCccEEEeecCcccCCCc-h-hhcCcCcCceEEecCCCCC---ccchhhcCCCCCCE
Q 047447 39 CKLVLEKCLSLQSLP-SSL-CMFKSLTSLEIIDCQNFKILP-Y-ELGNLKALETLIVDGTLIR---EVPESLGQLSSLKI 111 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~~~-~-~~~~l~~L~~l~l~~n~l~---~l~~~~~~~~~L~~ 111 (150)
++++.++|...+..+ ..+ .+..+|+.+.+..|...+... . .-..++.|+.+++.++... ++.....+++.||.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 455666665443222 112 345778888888876543321 1 1135677888888887554 24444468888999
Q ss_pred EEccCCc-Cccc-----CccccCCCCCCEEEccCCC
Q 047447 112 LVLTNNG-LKRL-----PESLNQLSSLKRLVLSDNP 141 (150)
Q Consensus 112 l~l~~n~-i~~l-----p~~~~~~~~L~~l~l~~n~ 141 (150)
+.+++|. |++- ...-..+..+..+.+++++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 8888887 5542 1222334556666666654
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.32 E-value=0.45 Score=20.92 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=11.5
Q ss_pred CCCcEEecccCCCc
Q 047447 3 KSLQSIEISNCSIL 16 (150)
Q Consensus 3 ~~L~~L~l~~~~~~ 16 (150)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57899999998764
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.27 E-value=0.014 Score=39.99 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=56.8
Q ss_pred hcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447 80 LGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150 (150)
Q Consensus 80 ~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~ 150 (150)
+......+.+|++.|.+..+-..+..++.+..++++.|.+.-+|+.++....+++++...|..+..|.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 44556678889998877766556666677788899999999999999998889999999998888887653
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.35 E-value=11 Score=29.46 Aligned_cols=64 Identities=22% Similarity=0.116 Sum_probs=34.1
Q ss_pred CCCCccEEEeecCcccCCC--chhhcCcCcCceEEecCC--CCCccchh-hcCCCCCCEEEccCCcCcc
Q 047447 58 MFKSLTSLEIIDCQNFKIL--PYELGNLKALETLIVDGT--LIREVPES-LGQLSSLKILVLTNNGLKR 121 (150)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~l~l~~n--~l~~l~~~-~~~~~~L~~l~l~~n~i~~ 121 (150)
+.+.+..+.+++|++.... ..-....+++..|+|++| .+...++. -.....|+++-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3455666677776654432 122235566777777777 33322221 1133346667777777554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.11 E-value=13 Score=29.14 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=6.4
Q ss_pred CCCCCCEEEccCC
Q 047447 105 QLSSLKILVLTNN 117 (150)
Q Consensus 105 ~~~~L~~l~l~~n 117 (150)
..+.|..|++++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 4444455555554
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=45.58 E-value=0.79 Score=35.00 Aligned_cols=84 Identities=27% Similarity=0.386 Sum_probs=40.1
Q ss_pred CCCccEEEeecCcccCCC----chhhcCcCc-CceEEecCCCCCc-----cchhhcCC-CCCCEEEccCCcCcc-----c
Q 047447 59 FKSLTSLEIIDCQNFKIL----PYELGNLKA-LETLIVDGTLIRE-----VPESLGQL-SSLKILVLTNNGLKR-----L 122 (150)
Q Consensus 59 l~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~l~l~~n~l~~-----l~~~~~~~-~~L~~l~l~~n~i~~-----l 122 (150)
..+++.|.+.+|.++... -..+...++ +..+++..|.+.+ +.+.+..+ ..+++++++.|.|++ +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 445566666665554321 111222233 4445666665542 12233333 445666666666554 2
Q ss_pred CccccCCCCCCEEEccCCCC
Q 047447 123 PESLNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 123 p~~~~~~~~L~~l~l~~n~l 142 (150)
...+..++.++.+.++.|.+
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhhhHHHHHhhcccCcc
Confidence 23344455566666666554
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.41 E-value=21 Score=33.49 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=27.7
Q ss_pred EeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447 66 EIIDCQNFKILPYELGNLKALETLIVDGTLIR 97 (150)
Q Consensus 66 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 97 (150)
||++|++....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47788888877788999999999999999876
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.89 E-value=26 Score=32.99 Aligned_cols=31 Identities=3% Similarity=-0.097 Sum_probs=22.2
Q ss_pred ecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447 42 VLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN 72 (150)
Q Consensus 42 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 72 (150)
||++|++...-+..|..+++|+.|+|++|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 4666554444446677899999999999764
No 90
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=26.38 E-value=36 Score=14.74 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=7.9
Q ss_pred CCCCcEEeccc
Q 047447 2 LKSLQSIEISN 12 (150)
Q Consensus 2 l~~L~~L~l~~ 12 (150)
+|+|++||...
T Consensus 12 LPqL~~LD~~~ 22 (26)
T smart00446 12 LPQLRKLDXXX 22 (26)
T ss_pred CCccceecccc
Confidence 67888887653
Done!